Questions

This is a list of all the questions and their associated study carrel identifiers. One can learn a lot of the "aboutness" of a text simply by reading the questions.

identifier question
10_1101-2020_09_02_279521What Have We Learned from Expedition III and EPOCH Trials?
10_1101-2020_11_17_386649Big data: astronomical or genomical?
10_1101-2021_02_01_429246In particular, most research concentrates on the average case: what is the lowest expected density given a long random input sequence?
10_1101-2021_02_08_430280( 2013) TRNA modifications: Necessary for correct tRNA- derived fragments during the recovery from stress?
10_1101-2021_02_09_430363How Does Your Cortex Grow?
10_1101-2021_02_11_430806How do intrinsically disordered protein regions encode a driving force for liquid- liquid phase separation?
10_1101-2021_02_11_430847Groves IJ, Coleman N. Human papillomavirus genome integration in squamous carcinogenesis: what have next- generation sequencing studies taught us?
10_1101-2021_02_11_430871How significant is a protein structure similarity with TM- score= 0.5?.
10_1101-2021_02_08_428881Ribeiro, M., Singh, S., and Guestrin, C."why should i trust you?
10_1101-2021_02_12_430989Why weight?
10_1101-2021_02_12_430979Is it time to change the reference genome?
10_1101-2021_02_10_430623How many biological replicates are needed in an RNA- seq experiment and which differential expression tool should you use?
10_1101-2021_02_10_430623RNA- seq differential expression studies: more sequence or more replication?
10_1101-2021_02_12_430830Without such capability, the answer to the question “ Is it the mutation rate or the death rate? ” would always be “ mutation rate ”.
10_1101-2021_02_12_430830[ 3] Tomlinson I, Sasieni P and Bodmer W. How Many Mutations in a Cancer?
10_1101-2021_02_08_430343Model Accuracy GO results?
10_1101-2021_02_08_430343Model Accuracy GO results?
10_1101-698605So why did we embark on another comparative study?
10_1101-698605Why is this happening?
10_1101-2021_02_11_4307627612/5 669/288 990/197 103016/29968 all 1-sequence tests?
10_1101-2021_02_11_4307627617/103 957/41 1187/396 132984/2268 expected span?
10_1101-2021_02_11_430695But why do log- ratios form the basis of CoDa methodology?
10_1101-2021_02_11_430695What can go wrong at the data normalization step for identification of biomarkers?
10_1101-2021_02_11_430789Are Ab- stracts Enough for Hypothesis Generation?.
10_1101-2021_02_11_430789Can Melatonin Be a Potential “ Silver Bullet ” in Treating COVID-19 Patients?
10_1101-2021_02_11_430789Is there an underlying link between COVID-19, ACE2, oxytocin and vitamin D?
10_1101-2021_02_11_430789Why is COVID-19 less severe in children?
10_1101-2020_01_28_923532Arnedos, M., Vielh, P., Soria, J.C.& Andre, F. The genetic complexity of common cancers and the promise of personalized medicine: is there any hope?
10_1101-2020_01_28_923532First, how many targeted treatments are needed to selectively kill most tumor cells while sparing most of the non- tumor cells in a given patient?
10_1101-2021_02_10_430563Are some subjects missing data?
10_1101-2021_02_10_430563E.g., first open file X and then look at file Y. o What additional details do they need to know?
10_1101-2021_02_10_430563Some information that should be included are: o How would a user use the files that are provided?
10_1101-2021_02_10_430563e.g., did you provide a GitHub repository or are there additional papers beyond what was provided in the metadata form?
10_1101-2021_02_10_430563o Are there appropriate/ inappropriate uses for this data?
10_1101-2021_02_10_430563o Are there other places that users can go for more information?
10_1101-2021_02_10_430563o Are there warnings about how to use the data or code?
10_1101-2021_02_10_430563sub??-task1-run??
10_1101-2021_02_10_430563sub??-task1-run??
10_1101-2020_10_08_327718Are any annotations, arrows or labels clearly explained for all images in the paper?
10_1101-2020_10_08_327718Are colors in images explained either on the image or within the legend?
10_1101-2020_10_08_327718Did a change in Nature journals ’ editorial policy for life sciences research improve reporting?
10_1101-2020_10_08_327718Did the paper contain appropriately labeled scale bars for all images?
10_1101-2020_10_08_327718If the paper contains colored labels, are these labels visible to someone with the most common form of color blindness( deuteranopia)?
10_1101-2020_10_08_327718Is the species and tissue, object, or cell line name clearly specified in the figure or legend for all images in the paper?
10_1101-2020_10_08_327718Were all insets clearly and accurately marked?
10_1101-2020_10_08_327718Were all insets clearly explained in the legend?
10_1101-2020_10_08_327718fluorescence microscopy), are key features of the images visible to someone with the most common form of colorblindness( deuteranopia)?