quadgram

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quadgram	frequency
the copyright holder for	1027
is the author funder	1027
not certified by peer	1020
certified by peer review	1020
which was not certified	962
was not certified by	955
copyright holder for this	890
a license to display	860
who has granted biorxiv	860
granted biorxiv a license	860
to display the preprint	860
has granted biorxiv a	860
display the preprint in	860
license to display the	860
biorxiv a license to	860
holder for this preprintthis	818
preprintthis version posted february	818
this preprintthis version posted	818
for this preprintthis version	818
the preprint in perpetuity	723
made the copyright holder	651
it is made the	651
is made the copyright	651
international licenseavailable under a	651
com b tes g	217
it is made available	209
made available under a	145
is made available under	144
in the copyright holder	137
thisthis version posted february	137
copyright holder for thisthis	137
available under a preprint	137
preprint in the copyright	137
holder for thisthis version	137
for thisthis version posted	137
the preprint in the	137
reuse allowed without permission	93
no reuse allowed without	93
ue ofupuwd jhxsou edit	89
d hkqd b gmabgnhrduyigpd	89
com document d hkqd	89
document d hkqd b	89
ofupuwd jhxsou edit smartreference	89
this article is a	74
subject to copyright under	74
for use under a	74
is not subject to	74
a us government work	74
under usc the copyright	74
is also made available	74
article is a us	74
under a cc license	74
not subject to copyright	74
made available for use	74
use under a cc	74
usc the copyright holder	74
to copyright under usc	74
and is also made	74
available for use under	74
it is not subject	74
is a us government	74
copyright under usc the	74
also made available for	74
holder for this preprint	72
licenseunder a not certified	65
wasthis version posted february	65
a not certified by	65
international licenseunder a not	65
made available the copyright	65
which wasthis version posted	65
available the copyright holder	65
is made available the	65
com c tes g	59
ar m on y	52
h ar m on	52
the era of high	39
in the era of	39
for each of the	38
of cancer mutations in	37
approach for quality control	37
a fully automated approach	37
mutations in the era	37
for quality control of	37
control of cancer mutations	37
resolution whole genome sequencing	37
fully automated approach for	37
automated approach for quality	37
quality control of cancer	37
cancer mutations in the	37
in hi bi tio	32
hi bi tio n	32
drc in presence of	32
can be used to	30
as well as the	30
the total number of	29
the size of the	29
no no no no	28
h h h h	28
on the other hand	27
best ae for each	24
each of the tested	24
e ig en ge	24
ig en ge ne	24
ae for each of	24
the best ae for	24
remdesivir drc in presence	24
by the best ae	23
of the tested dimension	23
driver and passenger mutations	23
g m m m	22
m m m d	22
journal and volume and	21
in the context of	21
in proceedings of the	19
is the number of	19
of the national academy	19
the national academy of	19
national academy of sciences	19
chr chr chr chr	18
proceedings of the national	18
achieved by the best	18
the distribution of the	18
a wide range of	17
we found that the	17
in presence of raloxifene	16
the genes selected by	16
can be found in	16
targeted gene profiling data	16
in the case of	16
the parental genome sequences	16
national institutes of health	16
of raloxifene log c	16
presence of raloxifene log	16
by the different strategies	15
significant structural variant method	15
and volume and issue	15
a small number of	15
achieved by the different	15
the length of the	14
cell rna sequencing data	14
the performance of the	14
the rest of the	14
we were able to	14
the glm egs method	14
u m a p	13
t s n e	13
the abide data set	13
an overview of the	13
the significant structural variant	13
yes no no no	13
gmmmd followed by harmony	13
umap u m a	13
with respect to the	13
a large number of	12
one of the most	12
more likely to be	12
the precision and recall	12
the quality of the	12
v a lu e	12
at the end of	12
as a function of	12
ccf and read counts	12
at the same time	12
the scc and pcc	12
gwas summary statistics datasets	12
the d structure of	12
and read counts distribution	12
b k n n	12
lower bound on the	12
re p rin t	12
b b k n	12
p re p rin	12
in neural information processing	11
s ie m e	11
the best results for	11
ra te ns e	11
of the reference sequence	11
ha lia na t	11
p ra te ns	11
are more likely to	11
a ur ea a	11
peripheral blood mononuclear cells	11
in addition to the	11
axis denotes the scc	11
og en a to	11
in the reference sequence	11
neural information processing systems	11
ie m e n	11
itr og en a	11
was supported by the	11
for nanopore methylation detection	11
n itr og en	11
best results for the	11
for differential expression analysis	11
m e n s	11
in international conference on	11
a mean ari of	11
as shown in figure	11
generated by particlechromo d	11
the full set of	11
t ha lia na	11
is based on the	11
advances in neural information	11
a to m s	11
the number of genes	11
en a to m	11
not s ti not	11
pca followed by bbknn	11
global confidence at local	10
to the number of	10
peak analysis and ccf	10
head and neck cancer	10
confidence at local confidence	10
the nb loss function	10
the mean of the	10
journal and issue and	10
of the number of	10
this work was supported	10
and issue and volume	10
used in this study	10
work was supported by	10
ccf computation for the	10
in the polar set	10
have been developed to	10
as part of the	10
by global confidence at	10
m d a e	10
analysis and ccf computation	10
computation for the sample	10
we observed that the	10
m m d a	10
the nitrogen content of	10
and ccf computation for	10
a function of the	9
b tes g x	9
of the same gene	9
k k k k	9
mmdvae followed by harmony	9
niagads gwas summary statistics	9
b tes g p	9
score in the range	9
department of computer science	9
markov chain monte carlo	9
set for patient set	9
pca followed by harmony	9
ssu and lsu rrna	9
sample set for patient	9
the total link energy	9
d en si ty	9
it is possible that	9
region sample set for	9
no no no yes	9
the tcga breast cancer	9
the ssnp totalsnp ratio	9
structures generated by particlechromo	9
the difference between the	9
the probability that the	9
the allele frequency method	9
the results of the	9
mmdae followed by harmony	9
tsne t s n	9
cell gene expression data	9
competing interests the authors	9
a lower bound on	9
a mean value of	9
nelfinavir drc in presence	8
jhxsou edit smartreference ruyzz	8
a plot of the	8
no yes no no	8
in presence of thioguanosine	8
to each of the	8
using the svm model	8
between driver and passenger	8
of anisomycin log c	8
across a wide range	8
file detailing the full	8
england journal of medicine	8
is shown in figure	8
a set of k	8
of the annotation matrix	8
the sparc curation team	8
in the form of	8
only the bulk genome	8
journal of the american	8
the cancer genome atlas	8
b rqvmzs j j	8
a set of genes	8
b io r xiv	8
attention feed forwad attention	8
of thioguanosine log c	8
the dimension of the	8
full set of information	8
the tet profile of	8
supported by the national	8
presence of thioguanosine log	8
m s pe r	8
is available at https	8
set of information presented	8
ranked genes based on	8
using only the bulk	8
the bulk genome sequences	8
presence of anisomycin log	8
with cell library sizes	8
of layered polar sets	8
of information presented in	8
b tes g h	8
in the training set	8
of levothyroxine and eptifibatide	8
to m s pe	8
of the expression of	8
braak e ig en	8
is defined as the	8
edit smartreference ruyzz p	8
information presented in the	8
ns e n itr	8
in presence of anisomycin	8
differential expression analysis of	8
smartreference ruyzz p https	8
be found in the	8
n d e r	8
is one of the	8
cerad e ig en	8
by comparing the particlechromo	8
the confidence interval of	8
excel file detailing the	8
new england journal of	8
the probability that a	8
o b se rv	8
for the gm datasets	8
in any of the	8
interests the authors declare	8
for the development of	8
comparing the particlechromo d	8
of driver and passenger	8
in the original paper	8
we would like to	8
ti not s ti	8
sum of squared errors	8
it is clear that	8
for the analysis of	8
detailing the full set	8
b se rv ed	8
obtained by comparing the	8
e n itr og	8
te ns e n	8
tes g is ix	8
in the field of	8
cdr e ig en	8
correspondence should be addressed	8
can be used for	8
com b rqvmzs j	8
for targeted gene profiling	8
the mb and kb	7
and pca followed by	7
the authors declare no	7
certified bythis version posted	7
the site frequency spectrum	7
validation of the top	7
particle swarm optimization algorithm	7
com b rqvmzs mqr	7
the majority of the	7
detection and quantification of	7
b rqvmzs wpg http	7
would like to thank	7
tes g yrf j	7
feed forwad attention feed	7
wgs filter not mrna	7
version of the inter	7
their association with ad	7
the presence of a	7
t im t r	7
site effects in the	7
com b rqvmzs up	7
a subset of the	7
of the polar set	7
a comparison of the	7
com b rqvmzs fjzp	7
scc and pcc value	7
label label label label	7
b rqvmzs fjzp http	7
com b rqvmzs chqb	7
com b rqvmzs p	7
associated with the trait	7
the original annotation matrix	7
gene set gs for	7
the expected hitting time	7
b rqvmzs ug x	7
rqvmzs ji a http	7
genes selected by triku	7
not refseq filter not	7
in the development of	7
we calculated the precision	7
be considered as a	7
com b rqvmzs ydma	7
in the presence of	7
b rqvmzs glz http	7
the hierarchical bayesian models	7
com b rqvmzs tqet	7
high weight genes in	7
a the copyright holder	7
national center for biotechnology	7
it is important to	7
by the number of	7
jhxsou edit smartreference s	7
b rqvmzs ueke http	7
and the number of	7
rqvmzs j j http	7
using a threshold of	7
b rqvmzs ncpj http	7
available under a the	7
not srcdb pdb prop	7
b rqvmzs tqet http	7
tes g ap gd	7
number of selected k	7
the poisson loss function	7
b rqvmzs er s	7
with the number of	7
com b rqvmzs ueke	7
com b rqvmzs ug	7
n s t im	7
b rqvmzs mwfz http	7
rqvmzs rl f http	7
com b rqvmzs er	7
not wgs filter not	7
null distribution of p	7
s t im t	7
pcc value is better	7
forwad attention feed forwad	7
were found to be	7
united states of america	7
the null distribution of	7
on the number of	7
b rqvmzs mqr http	7
com b rqvmzs ji	7
proc natl acad sci	7
map of the human	7
com b rqvmzs mwfz	7
and pcc value is	7
the species and tissue	7
of both the parents	7
b rqvmzs tcb http	7
not certified bythis version	7
in our previous work	7
is a set of	7
under a the copyright	7
b rqvmzs cimd http	7
com b rqvmzs rl	7
of booeshaghi and pachter	7
b rqvmzs p yv	7
ti not srcdb pdb	7
chinese academy of sciences	7
most common form of	7
the default parameter settings	7
higher scc and pcc	7
that there is a	7
true and predicted values	7
tens of thousands of	7
b rqvmzs ydma http	7
as the number of	7
on a random sequence	7
rqvmzs ug x http	7
set gs for subject	7
filter not mrna filter	7
w w w w	7
manifold approximation and projection	7
are shown in figure	7
b rqvmzs rl f	7
the weight matrix of	7
was not certified bythis	7
genes selected by each	7
between true and predicted	7
the ssnp totalsnp ratios	7
com b rqvmzs ncpj	7
the most common form	7
com b rqvmzs tcb	7
b rqvmzs up http	7
can be considered as	7
a higher scc and	7
bythis version posted february	7
the authors declare that	7
to the fact that	7
im t r io	7
the number of false	7
uniform manifold approximation and	7
informative genes selected by	7
b rqvmzs chqb http	7
to be associated with	7
in the latent space	7
number of nitrogen atoms	7
com b rqvmzs glz	7
b rqvmzs ji a	7
the peak memory usage	7
com b rqvmzs wpg	7
if and only if	7
the link energy of	7
in the number of	7
e n s t	7
com b rqvmzs cimd	7
rqvmzs p yv http	7
both the parents and	7
calculated the precision and	7
is the size of	7
mitochondrial and ribosomal genes	7
used to build the	7
is based on a	7
rqvmzs er s http	7
the number of isoforms	6
c om b at	6
the driver and passenger	6
for d structure reconstruction	6
n p c a	6
the number of times	6
ribotyper and rrna sensor	6
is important to note	6
the vast majority of	6
b rqvmzs cxxa http	6
important to note that	6
with the help of	6
tes g p kbb	6
a universal hitting set	6
cs achieved by the	6
m m d v	6
denotes the scc and	6
that they have no	6
mutation rate and the	6
human and hpv genomes	6
the end of the	6
of the fs methods	6
g b kallisto alevin	6
the number of mutations	6
showing the ari values	6
can be found at	6
the plot it is	6
an excel file detailing	6
are likely to be	6
com plger diffutr paper	6
n n p c	6
between omeprazole and clopidogrel	6
on date month year	6
followed by harmony with	6
b tes g zgbvl	6
in the supplementary material	6
amii achieved by the	6
in supplementary section s	6
center for biotechnology information	6
gs for subject k	6
an adult gbm sample	6
by harmony with dimension	6
c a c om	6
totalsnp ratio and the	6
small subunit ribosomal rna	6
administration of atorvastatin and	6
it is possible to	6
b rqvmzs ix r	6
and the imputed data	6
the national institutes of	6
with ddis involving atorvastatin	6
the modified combat model	6
kjin h p a	6
of the mutation rate	6
p c a p	6
start and end positions	6
of atorvastatin and a	6
ssnp totalsnp ratio and	6
in an adult gbm	6
in the ribovore documentation	6
american journal of physiology	6
proceedings of the th	6
simple bayesian linear model	6
subunit ribosomal rna ti	6
not mitochondrial ti not	6
com b rqvmzs tmou	6
allows the user to	6
were calculated using the	6
to impute dropout events	6
the and is also	6
or cell related information	6
availability of data and	6
si ty fa ct	6
c gp o c	6
d chromosome and genome	6
b rqvmzs tmou http	6
com c rqvmzs ic	6
see supplementary information for	6
com b rqvmzs bhgv	6
set of genes that	6
ti or s ti	6
com b rqvmzs a	6
aid of the parental	6
parents and the bulks	6
ratio and the g	6
b rqvmzs zohm http	6
the independent test set	6
tes g td vb	6
predicted genes with ad	6
authors declare that they	6
mutation and turnover rates	6
of the parental genome	6
of each of the	6
rqvmzs ix r http	6
of the most important	6
imaging and clinical data	6
the genome sequences of	6
ti m e m	6
the refined bert model	6
sequences of both the	6
gp o c gp	6
w bases away from	6
tes g qaj q	6
en si ty fa	6
of cells in the	6
m e m in	6
com b rqvmzs vqgd	6
b rqvmzs a vg	6
ti not refseq filter	6
not chloroplast filter not	6
no yes yes yes	6
of omeprazole and clopidogrel	6
com c kjin cdsll	6
of the human genome	6
b rqvmzs bd o	6
is associated with the	6
the false discovery rate	6
in the same way	6
the reference variation graph	6
targeted gene profiling dataset	6
tes g sc c	6
tes g p pxd	6
ptn ip rk ts	6
results show that the	6
b rqvmzs vqgd http	6
genes based on their	6
ieee international conference on	6
o c gp o	6
ti or internal ti	6
the aid of the	6
the expressions of all	6
s ti or s	6
the particlechromo d algorithm	6
head and neck squamous	6
c c a c	6
model for predicting ad	6
a c om b	6
tes g xbz p	6
fms achieved by the	6
and neurons for the	6
the sum of squared	6
dimensional embeddings of the	6
com b rqvmzs yagn	6
the genes in the	6
com b rqvmzs ix	6
kb gm cell hi	6
international conference on machine	6
the national institute of	6
from the plot it	6
com b rqvmzs bd	6
b rqvmzs sxxl http	6
c rqvmzs ic y	6
standard deviation of the	6
hs achieved by the	6
that the number of	6
is due to the	6
or s ti or	6
number of informative genes	6
a high degree of	6
ty fa ct or	6
the ari values achieved	6
x x x x	6
of machine learning research	6
on the cell surface	6
obtained the best results	6
regressing out site effects	6
without the aid of	6
for individual i at	6
the residual permutation approach	6
have the same scale	6
m d v a	6
the human and hpv	6
no no yes no	6
from the training set	6
we show that the	6
plot it is clear	6
the cells in the	6
com oluwadarelab particlechromo d	6
c a p c	6
the proportion of detected	6
not included in the	6
com b rqvmzs sxxl	6
structure produced using a	6
the mutation rate and	6
for subject k in	6
journal of machine learning	6
selected weight matrix ws	6
c kjin cdsll https	6
m em or y	6
from the polar set	6
training and test sets	6
they have no competing	6
com c rqvmzs cxxa	6
the human reference genome	6
by the fact that	6
to compute empirical p	6
tes g x omi	6
is the total number	6
a p c a	6
associated with the co	6
in the supplementary materials	6
of the training set	6
s ti or internal	6
the time and memory	6
g is ix http	6
nitrogen content of the	6
the area under the	6
represents the structure produced	6
no no yes yes	6
com b rqvmzs uxwc	6
as described in the	6
with the aid of	6
conference on machine learning	6
d v a e	6
b rqvmzs df v	6
tes g x njd	6
results for the dimensions	6
due to the fact	6
com b rqvmzs zohm	6
vm achieved by the	6
associated with ddis involving	6
on the order of	6
com b rqvmzs df	6
tes g f wh	6
is similar to the	6
the variation in the	6
k n n p	6
declare that they have	6
whom correspondence should be	6
genome sequences of both	6
b tes g is	6
absent from the reference	6
or y g b	6
rqvmzs df v http	6
the de bruijn graph	6
from sequenced cancer genomes	6
the imputed data by	6
em or y g	6
braak and cdr scores	6
b rqvmzs yagn http	6
by booeshaghi and pachter	6
area under the receiver	6
mb and kb resolution	6
ari values achieved by	6
modal imaging and clinical	6
dimension of the input	6
the maximum activation value	6
for the purpose of	6
using the nb loss	6
are available at https	6
of computer science and	6
boxplot showing the ari	6
not mrna filter not	6
the parents and the	6
and the identification of	6
rqvmzs bd o http	6
across a range of	6
com b rqvmzs cxxa	6
resolution for the gm	6
the structure produced using	6
gene or cell related	6
in gyra and parc	6
b rqvmzs uxwc http	6
have been implicated in	6
yes r m drop	5
to account for the	5
b tes g iigur	5
site as a predictor	5
with age and sex	5
g x njd http	5
a minimizer compatible with	5
b tes g ksjuz	5
the number of selected	5
and neck squamous cell	5
upper bound on the	5
gene selection for targeted	5
and a concomitant drug	5
versions of the inter	5
the number of reads	5
data used in this	5
digital transcriptional profiling of	5
in the first layer	5
is shown in this	5
an r package for	5
correlations with cell library	5
com b rqvmzs ic	5
the peak on chromosome	5
the standard deviation of	5
edit smartreference jbvdrwuod wd	5
shown in this figure	5
associated lung adenocarcinoma transcript	5
are selected with the	5
the system should be	5
parameter settings proposed in	5
activation value of the	5
human peripheral blood mononuclear	5
to the best of	5
passed ribotyper and failed	5
the number of coexpressed	5
ensg ense ankrd c	5
s ti or large	5
b tes g yrf	5
of a random minimizer	5
ethnic study of atherosclerosis	5
b rqvmzs ic y	5
the expected number of	5
of the tcga breast	5
adaptations to low nitrogen	5
y g b kallisto	5
features are selected with	5
in the following sections	5
w bases apart in	5
comprehensive integration of single	5
b tes g xjiz	5
the max activation value	5
is available at the	5
jhxsou edit smartreference jbvdrwuod	5
g sc c http	5
brain imaging data structure	5
only sequences that pass	5
spatial and dihedral labels	5
filter not plastid filter	5
nb loss function and	5
with at least one	5
and neck cancer data	5
the performance of our	5
the functional impact of	5
tp and pik ca	5
the polar set condition	5
k in cohort k	5
mixenrich version of the	5
we have shown that	5
proportion of subjects with	5
b tes g ap	5
both real and simulated	5
g p pxd http	5
medical research council cambridge	5
number of shared mirnas	5
the number of copies	5
not present in the	5
using the default parameter	5
all images have the	5
associated genes in ppi	5
p hi li ps	5
the quantile empirical p	5
of data and materials	5
artificial and benchmarking datasets	5
species and tissue or	5
is the length of	5
the number of shared	5
peak memory usage of	5
by taking into account	5
rqvmzs ic y http	5
imputed data by bfimpute	5
number of coexpressed gene	5
yes yes no no	5
the receptive field size	5
and tissue or object	5
tes g jngul http	5
s ti not s	5
tes g iigur http	5
the number of k	5
cell library sizes in	5
with the addition of	5
loci a and b	5
additive and multiplicative site	5
the best of our	5
precision and recall of	5
g yrf j http	5
yes no yes no	5
at loci a and	5
atorvastatin and a concomitant	5
the number of cells	5
pathways and various gene	5
genes are associated with	5
of coexpressed gene pairs	5
b tes g gkvg	5
subject k in cohort	5
taking into account the	5
from bulk sequencing data	5
a gyra s l	5
the user can also	5
tes g gkvg http	5
variable coverage of the	5
rqvmzs pf t http	5
the three cell types	5
other five imputation methods	5
the identification of significant	5
b tes g sc	5
yes yes yes yes	5
the brain imaging data	5
the particle swarm optimization	5
tes g nr r	5
pseudo targeted gene profiling	5
g xbz p http	5
by different fs methods	5
the conformation of the	5
the significance of the	5
and various gene networks	5
results are shown in	5
compared to the other	5
no yes no yes	5
in the selected bases	5
to the polar set	5
selection for targeted gene	5
a window size of	5
can also be used	5
button on the toolbar	5
the number of clusters	5
be used as a	5
index nmi purity adjusted	5
we will refer to	5
b tes g istvg	5
ms a ms a	5
mean standardized log loss	5
with variable coverage of	5
nmi purity adjusted rand	5
the two versions of	5
of the genes selected	5
an overall accuracy of	5
axis denotes the chromosome	5
see methods for details	5
are not included in	5
compared to the previous	5
to low nitrogen availability	5
the number of features	5
is supported by the	5
effects in the data	5
the number of patients	5
in terms of their	5
downstream analysis of scrna	5
the number of cell	5
genes selected by the	5
the features are selected	5
research council cambridge stem	5
of single administrations of	5
images have the same	5
of the types of	5
training and test set	5
at the gene level	5
for a variety of	5
the specific density of	5
dt acr aal q	5
ribosomal and mitochondrial genes	5
ankrd c antisense rna	5
we have developed a	5
have no competing interests	5
declare no competing interests	5
where n is the	5
the database can be	5
structure with the simulated	5
metric score in the	5
data for the sample	5
metastasis associated lung adenocarcinoma	5
it is not clear	5
of significant differential expressions	5
the number of unique	5
number of copies of	5
the decile enrichment test	5
tes g so k	5
b tes g ovhrz	5
mixture of synonymous motifs	5
the selected weight matrix	5
com b kjin y	5
not tls ti not	5
simulated experiment with variable	5
is then used to	5
produced using a threshold	5
form of color blindness	5
b rqvmzs pf t	5
chromosome d structure reconstruction	5
has been used to	5
on the human reference	5
each fragment identified in	5
profiling of single cells	5
experiment with variable coverage	5
the structures generated by	5
the large number of	5
c o u n	5
in order to assess	5
cambridge stem cell institute	5
can be seen as	5
smartreference dt acr aal	5
council cambridge stem cell	5
tes g yaa p	5
plastid filter not chloroplast	5
in fig a and	5
cell type annotation on	5
the ncbi sra database	5
the association of the	5
with any of the	5
at least one of	5
the downstream analysis of	5
tes g h jgr	5
is available on github	5
based consensus assembly and	5
the head and neck	5
driver and passenger neighborhoods	5
are provided in supplementary	5
presence or absence of	5
s ssu rrna database	5
tes g zgbvl http	5
single cell rna sequencing	5
representation of the data	5
a significant number of	5
of genes selected by	5
b tes g jngul	5
administration of levothyroxine and	5
tes g ksjuz http	5
for each simulated experiment	5
selected by different fs	5
each simulated experiment with	5
the position of the	5
values under the null	5
has been shown to	5
represents the number of	5
filter not tls ti	5
purity adjusted rand index	5
pcc by global confidence	5
a plot of pcc	5
the user can download	5
jaccard index nmi purity	5
default parameter settings proposed	5
the presence or absence	5
the relative abundances of	5
g ap gd http	5
output structure with the	5
and multiplicative site effects	5
b tes g xbz	5
the absence of a	5
each node of the	5
com b rqvmzs rmmc	5
and cell type identification	5
peak on chromosome was	5
b tes g uybhs	5
in the cancer genome	5
the link energy is	5
real and simulated data	5
and end positions of	5
from the ncbi sra	5
acr aal q https	5
with the sparc group	5
we observe that the	5
in the back pocket	5
bases apart in s	5
not plastid filter not	5
link energy of the	5
com dcgerard ldsep https	5
ti or large subunit	5
supported in part by	5
genes selected by different	5
smartreference jbvdrwuod wd https	5
the multiple mapped reads	5
in the realistic data	5
scale bar with dimensions	5
a domain specific language	5
in the analysis of	5
downloaded from the ncbi	5
identification of significant differential	5
of a drug pair	5
b rqvmzs bhgv http	5
the number of sequences	5
e m in kallistoalevin	5
the same number of	5
t t t t	5
b rqvmzs lh http	5
area under the precision	5
as a result of	5
of gene expression data	5
as shown in fig	5
filter not chloroplast filter	5
human junction gapdh hpv	5
the set of genes	5
authors declare no competing	5
tes g istvg http	5
parallel digital transcriptional profiling	5
a polar set a	5
the american statistical association	5
of the american statistical	5
journal of computational biology	5
c antisense rna hgnc	5
mutation effect prediction algorithms	5
com b rqvmzs pf	5
minimizer compatible with a	5
in the downstream analysis	5
com dcgerard ldfast sims	5
scc by global confidence	5
see supplementary table s	5
to a set of	5
as well as other	5
mutations from sequenced cancer	5
using the posterior mean	5
show that particlechromo d	5
jhxsou edit smartreference dt	5
targeted gene profiling experiments	5
in this section we	5
com b rqvmzs lh	5
it can be used	5
transcriptional profiling of single	5
new targeted gene profiling	5
on the proportion of	5
that can be used	5
tes g ovhrz http	5
edit smartreference dt acr	5
using the leiden algorithm	5
cell journal and volume	5
in terms of the	5
rqvmzs a vg http	5
and the turnover rate	4
g td vb http	4
the top predicted genes	4
specify that sequences with	4
drug repurposing screening experiments	4
the niagads genome browser	4
oryza sativa info index	4
b tes g nr	4
of the data sets	4
are available on github	4
distribution in the latent	4
structure reconstruction from hi	4
our results show that	4
account the multiple mapped	4
the conditional probability for	4
uc le ot id	4
package for differential expression	4
or american journal of	4
with relative position representation	4
tes g trkjf http	4
y p e e	4
the ratio of the	4
and recall of the	4
for variants of concern	4
tes g oxebr http	4
be associated with ad	4
achieving an overall accuracy	4
of gene expression in	4
yrig h t h	4
scc and pcc metric	4
of author information is	4
is in line with	4
based on problems observed	4
a hierarchical bayesian model	4
rn a tio n	4
full list of author	4
in head and neck	4
ense malat metastasis associated	4
r xiv a lice	4
malat metastasis associated lung	4
massively parallel digital transcriptional	4
tes g dtjl http	4
from the notion of	4
n a n a	4
se santai rm expected	4
notes in computer science	4
helsinki university analyzer for	4
and the compiled ad	4
ti not chloroplast ti	4
fraction of tumor cells	4
using the genome sequences	4
of somatic mutations in	4
language and environment for	4
com b kjin o	4
with the simulated dataset	4
length of the reference	4
in te rn a	4
is known to be	4
the shape of the	4
or kraken for each	4
training set test set	4
data obtained from the	4
of digital gene expression	4
le ot id e	4
it should be noted	4
co p yrig h	4
of intervention time and	4
used to derive the	4
the same cell type	4
china national center for	4
bayesian probabilistic matrix factorization	4
foundation for statistical computing	4
pbmc k v human	4
fli quantification for rna	4
a polar set with	4
best results are shown	4
training set of mutations	4
the sparc data structure	4
genetic evidence for ad	4
set test set hblm	4
the global confidence values	4
in the gene expression	4
uptake in frontal cortex	4
national center for bioinformation	4
the cohort target set	4
this study was supported	4
national genomics data center	4
at mb resolution for	4
academy of sciences of	4
the foreground distribution is	4
e rp e tu	4
va ila b le	4
difference between the two	4
provided in the supplementary	4
rate t ru e	4
is uploaded to protocols	4
o ld e r	4
which can be used	4
an estimate of the	4
equal to the number	4
and the colored plot	4
a subset of top	4
likeajumprope bayesian normative models	4
at m m d	4
was obtained from the	4
of sciences of the	4
and cell type metadata	4
of the structures generated	4
the s ssu rrna	4
io r xiv p	4
for the identification of	4
tissue or object shown	4
or may not be	4
or if unknown fill	4
r re vie w	4
e e r re	4
the svm model when	4
of imaging and clinical	4
the posterior distribution of	4
if the last k	4
m v a e	4
drug pair and were	4
b tes g so	4
b tes g f	4
a sample size of	4
for the treatment of	4
per site per cell	4
between very small cohorts	4
smartreference glf ij qkb	4
e p o si	4
on the independent test	4
eukaryotic s ssu rrna	4
e co p yrig	4
in order to identify	4
the expression of individual	4
seq data analysis using	4
relative abundances expected and	4
score vectors and cell	4
protocol is uploaded to	4
om b at m	4
at the university of	4
it is m a	4
a s g ra	4
g ra n te	4
prr of single administrations	4
tested whether the top	4
be explained by the	4
their data according to	4
and jingyi jessica li	4
gene expression data analysis	4
jhxsou edit smartreference glf	4
on a curve means	4
and auprc based on	4
b le u n	4
b tes g kvv	4
is m a d	4
in addition to these	4
can activate the an	4
the structure of the	4
the de bruijn sequence	4
for each method the	4
the results suggest that	4
org oryza sativa info	4
projective nonnegative matrix factorization	4
hi li ps a	4
io r xiv a	4
d structure of vp	4
to instead identify a	4
not plastid ti not	4
administration of omeprazole and	4
on the fraction of	4
within its host gene	4
perelman school of medicine	4
number of expressed isoforms	4
in the hierarchical bayesian	4
com c kjin pwvxf	4
fair cohort target set	4
bioconductor package for differential	4
tes g ffndp http	4
are consistent with the	4
that allows users to	4
the average prr of	4
of the confidence interval	4
g p kbb http	4
tes g kwodd http	4
as one of the	4
scaespy can be used	4
of age and sex	4
a bioconductor package for	4
m was enriched in	4
is worth noting that	4
smartreference y ixemnm tac	4
sparse and mutually exclusive	4
orders of magnitude faster	4
jhxsou edit smartreference y	4
one of the two	4
in the table and	4
v e ra te	4
tes g ctvjs http	4
a u th o	4
g yaa p http	4
not chloroplast ti not	4
human embryonic stem cell	4
the colored plot denotes	4
of a gene is	4
the drug pair and	4
to be involved in	4
models for nanopore methylation	4
n se to d	4
ps a ch ie	4
mb and kb resolutions	4
at the time of	4
quality of reporting and	4
c kjin ujyyq https	4
rest of the fs	4
in the previous section	4
th o r fu	4
s ssu rrna sequences	4
numerical value space unit	4
at the gene set	4
h o h a	4
g f wh http	4
ce rtifie d b	4
moderated estimation of fold	4
for layered polar sets	4
single administrations of atorvastatin	4
sequences that do not	4
mean of the training	4
be found in fig	4
the crucial role of	4
and ligand type labels	4
u th o r	4
e n si ty	4
b tes g td	4
results on empirical data	4
d b io r	4
g h jgr http	4
number of unique inhibitors	4
standard error of the	4
a fragment within its	4
tes g jzsbx http	4
g nr r http	4
analysis of whole genomes	4
selected by triku and	4
mitochondrial ti not refseq	4
in figure panel i	4
common residue numbering scheme	4
both simulated and real	4
it is worth noting	4
simpson hsapiens cg sssi	4
a subset of cells	4
of the data is	4
and as a result	4
a large proportion of	4
the estimate of the	4
based on the raw	4
te d b io	4
xiv a lice n	4
smartreference mtxpwbv o fn	4
e b ru a	4
from left to right	4
by applying the glay	4
the pbmc k v	4
s pe r n	4
were obtained using the	4
g so k http	4
in gene expression data	4
of the training data	4
h ich w a	4
columns of the annotation	4
sample size of subjects	4
of the national institutes	4
o r fu n	4
of each fs method	4
in the protein sequence	4
xiv p re p	4
the best metric was	4
the content of the	4
to the research community	4
m in kallistoalevin m	4
kraken for each simulated	4
auroc and auprc results	4
si ty f a	4
administered the drug pair	4
may or may not	4
obscured in other methods	4
from the cancer genome	4
improvement of clinical endpoints	4
a lice n se	4
expected and computed by	4
the mean expression of	4
group group group group	4
association of the top	4
and global confidence values	4
to deal with site	4
as compared to passengers	4
weight genes in each	4
class cancer classification and	4
in single cell rna	4
and relevant gene identification	4
in the main text	4
contacts in the back	4
s g ra n	4
ty f a c	4
minimizers on a random	4
fig a and b	4
were able to identify	4
blob e e bf	4
w h o h	4
b tes g oxebr	4
used to generate the	4
from the raw data	4
w h ich w	4
com likeajumprope bayesian normative	4
as much peak memory	4
tes g otjgl http	4
research in computational molecular	4
funding this work was	4
b tes g wed	4
of the sliding windows	4
department of biomedical engineering	4
tes g inhk http	4
by each fs method	4
rtifie d b y	4
chromvar activity score for	4
estimation of fold change	4
edit smartreference glf ij	4
genome sequence and annotation	4
per cell division mutation	4
version of the model	4
problems observed by reviewers	4
the absolute value of	4
it more difficult to	4
available at the end	4
yes yes no yes	4
y th e p	4
by entering sra ids	4
atp binding region and	4
tes g egnuo http	4
the differences in the	4
yes no yes yes	4
close to each other	4
international conference on learning	4
code gsea bar full	4
denotes the global confidence	4
tp vs pik ca	4
of chinese academy of	4
associated genes and their	4
proportion of subjects within	4
in the active state	4
fa dbbebd c dd	4
structures per chromosome at	4
tes g llbfv http	4
b tes g ffndp	4
computed by strainflair or	4
end of the article	4
ddis between omeprazole and	4
we used the following	4
sparc material sharing policy	4
e r re vie	4
b tes g otjgl	4
conference on research in	4
a l lice n	4
b kjin ppxjz http	4
that it can be	4
ti not mitochondrial ti	4
the cell linage tree	4
number of sibling isoforms	4
b at m m	4
dbbebd c dd analysis	4
b tes g trkjf	4
a tio n a	4
in part by the	4
was found to be	4
the targeted gene profiling	4
rows of the annotation	4
alternative measurements of efficiency	4
the local confidence values	4
tes g wed http	4
b tes g qaj	4
of mitochondrial and ribosomal	4
ti v e ra	4
in the genome of	4
deal with site effects	4
size of subjects per	4
as the most highly	4
the svm model upon	4
of more than one	4
a va ila b	4
each of the three	4
y ixemnm tac https	4
the accuracy of the	4
natl acad sci usa	4
it is difficult to	4
in the tumor microenvironment	4
b ru a ry	4
of fold change and	4
of drug repurposing candidates	4
are known to be	4
e a u th	4
the primary data folder	4
the case of the	4
t ce rtifie d	4
cancer analysis of whole	4
the nodes of the	4
used to calculate the	4
for a wide range	4
in optimal solutions for	4
of cnvs inferred by	4
the expected proportion of	4
particlechromo d on the	4
tcga breast cancer dataset	4
th e a u	4
the probability of the	4
tes g qrfns http	4
manually annotated in the	4
between the two tissues	4
list of author information	4
auprc based on cross	4
u n d e	4
dec ec h h	4
the effect of the	4
features for our analysis	4
is th e a	4
o h a s	4
m a d e	4
mutations in gyra and	4
bound fixed interval sampling	4
ru e p o	4
from uitdewilligen et al	4
tes g kvv o	4
methods in terms of	4
b tes g afsz	4
o si ti v	4
lower bound fixed interval	4
reactions associated with drug	4
ve rsio n p	4
are highly correlated with	4
c rqvmzs p yv	4
with the most common	4
and computed by strainflair	4
h t h o	4
plastid ti not chloroplast	4
vector for sample i	4
fo r th is	4
p yrig h t	4
e p re p	4
fold change and dispersion	4
b tes g ctvjs	4
s in supplementary materials	4
expression analysis of rna	4
l lice n se	4
human embryonic stem cells	4
of fli quantification for	4
pachterlab bp blob e	4
length original research articles	4
r foundation for statistical	4
threshold for correlations between	4
these authors contributed equally	4
as lipe antisense rna	4
tes g xjiz http	4
chromosome at kb resolution	4
stoiber ecoli cg sssi	4
belonging to the same	4
on problems observed by	4
through the use of	4
reported for the adr	4
axis denotes the global	4
foreground and background distributions	4
stan carpenter et al	4
to readers with deuteranopia	4
peaks in the vaf	4
jhxsou edit smartreference mtxpwbv	4
median precision and recall	4
com c rqvmzs p	4
bdca g s in	4
nar genomics and bioinformatics	4
the model inference speed	4
in computational molecular biology	4
root mean squared error	4
tes g efyse http	4
applying the glay algorithm	4
if unknown fill in	4
r fu n d	4
tes g vadrs http	4
can be used as	4
combat fortin et al	4
ace is able to	4
of the same size	4
pe r n uc	4
does not depend on	4
lecture notes in computer	4
th e p re	4
the prr of their	4
in the abide data	4
the seven types of	4
unknown fill in with	4
g x omi http	4
d structure of the	4
author information is available	4
error of the mean	4
tes g afsz http	4
and the rest of	4
journal or american journal	4
the layered polar sets	4
in relation to the	4
ensg ense malat metastasis	4
to specify that sequences	4
identified as the most	4
the relative nitrogen content	4
lineage assignment for sars	4
chemical structures of drugs	4
the parameters of the	4
reached a mean ari	4
edit smartreference mtxpwbv o	4
snp dataset was processed	4
false positive rate t	4
of the research subjects	4
s prokaryotic ssu rrna	4
de bruijn sequence of	4
n a l lice	4
ste d f e	4
the p site of	4
genes that are not	4
followed by harmony was	4
for the prediction of	4
from the tet profile	4
this is due to	4
and support vector machine	4
large subunit ribosomal rna	4
ssnp totalsnp ratio of	4
tes g rmqgg http	4
e r fo r	4
tes g h tce	4
library sizes in scpnmf	4
ssnps and total snps	4
r xiv p re	4
a summary of the	4
correlations between score vectors	4
b tes g qtdx	4
p o si ti	4
directly by the user	4
expression of the gene	4
the layered polar set	4
was represented as a	4
t h o ld	4
pseudotime for each lineage	4
the relevance of the	4
administrations of atorvastatin and	4
we only need to	4
a ch ie va	4
chloroplast ti not mitochondrial	4
bioinformatic analysis of liquid	4
noted in this field	4
the gene expression data	4
d e r a	4
fragment within its host	4
the normative modeling framework	4
were extracted from the	4
positive rate t ru	4
from y to n	4
n uc le ot	4
and dispersion for rna	4
prr of their co	4
bins of the same	4
no conflict of interest	4
of the ssnp totalsnp	4
r n uc le	4
at the level of	4
h h hff npc	4
ich w a s	4
digital gene expression data	4
were obtained by comparing	4
are provided in the	4
the number of samples	4
mean ari equal to	4
a s n o	4
abundances expected and computed	4
b tes g yaa	4
top high weight genes	4
by strainflair or kraken	4
b tes g ndijk	4
f e b ru	4
colored de bruijn graphs	4
to deal with the	4
and lineage assignment for	4
achieved the best results	4
the viral life cycle	4
energy of the polar	4
of squared errors between	4
analysis of digital gene	4
dd analysis scripts code	4
n p o ste	4
tes g uybhs http	4
di martino et al	4
rqvmzs ic y https	4
an important role in	4
analyzer for variants of	4
to other existing tools	4
sciences of the united	4
t gyra d n	4
related pathways and various	4
international conference on research	4
ec h h hff	4
la y th e	4
under the null hypothesis	4
number of genes in	4
genes were more likely	4
h a s g	4
we also found that	4
plot of the scc	4
as long as the	4
ld e r fo	4
ra n te d	4
the goal is to	4
with ad based on	4
a mean ari equal	4
are located at the	4
the output of the	4
association with ad traits	4
created based on problems	4
two versions of the	4
t h e co	4
cell division mutation rate	4
of interest in the	4
and randomly selected genes	4
tes g ndijk http	4
model simulation process in	4
rp e tu ity	4
environment for statistical computing	4
cells from the tumor	4
and environment for statistical	4
oxyhemoglobin saturation during sleep	4
ila b le u	4
function of the q	4
in this study we	4
of subjects per arm	4
the training data set	4
the assumption that the	4
confidence interval of the	4
may not be a	4
b tes g efyse	4
the set of k	4
are then used to	4
the average number of	4
tes g ew ix	4
classification and biomarker identification	4
th is ve rsio	4
tio n a l	4
in the unselected bases	4
for the majority of	4
for correlations between score	4
study was supported by	4
conformation of the protein	4
the mixture of synonymous	4
the problem of finding	4
the activation value of	4
expression analysis of digital	4
in order to compare	4
ribotyper and failed rnammer	4
of detected specific genes	4
genes and the compiled	4
on the browse page	4
c dd analysis scripts	4
si ti v e	4
fragment identified in the	4
number of false positives	4
outside of the confidence	4
auroc and auprc based	4
and head and neck	4
t ru e p	4
settings proposed in scanpy	4
and only if the	4
g ew ix http	4
k v human mouse	4
users with no computational	4
ranked genes and the	4
n o t ce	4
of the phe side	4
of informative gene selection	4
for the modified combat	4
the density of a	4
com c kjin tegbs	4
te rn a tio	4
mc and ma datasets	4
results for the dimension	4
a parc s i	4
of optimal polar set	4
away from the notion	4
gene set enrichment analysis	4
b tes g jzsbx	4
f a c to	4
of targeted gene profiling	4
the average of the	4
s n o t	4
van rooij et al	4
cells umap u m	4
common form of colorblindness	4
predicted using the svm	4
to one of the	4
the table and then	4
the hierarchical bayesian approach	4
b tes g vadrs	4
in the absence of	4
figure a and figure	4
com c kjin ujyyq	4
at the strain level	4
while followed by harmony	4
denotes the local confidence	4
the history of the	4
an unexpected distribution of	4
in scpnmf step ii	4
average prr of single	4
the ncbi taxonomy tree	4
atorvastatin and concomitant drugs	4
are shown in bold	4
assembly and lineage assignment	4
tes g qtdx http	4
sparse and functionally interpretable	4
genes based on the	4
at kb resolution for	4
followed by harmony had	4
the values of the	4
the number of edges	4
that can be targeted	4
the vp protein was	4
microscope images show d	4
the sliding window algorithm	4
into account the multiple	4
associated ild involving atorvastatin	4
p e e r	4
from variants where gene	4
precuneus and parietal cortex	4
found that the top	4
random minimizers lower bound	4
for the pic datasets	4
a generalized linear model	4
read alignment with burrows	4
of cell biology papers	4
top of the page	4
b tes g kwodd	4
and archaeal ssu rrna	4
positions of a fragment	4
are available in the	4
the start and end	4
datasets in order to	4
berlin institute of health	4
tes g cxcxs http	4
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within the tumor microenvironment	4
simulation process in stan	4
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drug reactions associated with	4
with no computational background	4
with the advent of	4
proportion of detected specific	4
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bert models for nanopore	4
lipe antisense rna hgnc	4
this can be done	4
p rin t https	4
significant differential expressions among	4
the highest expressed isoform	4
in the second stage	4
acknowledgements we would like	4
the phe side chain	4
plot denotes the local	4
and then clicking the	4
r fo r th	4
the effect of intervention	4
download an excel file	4
fu n d e	4
vectors and cell library	4
between score vectors and	4
end positions of a	4
national institute on aging	4
the analysis of the	4
of mutations from the	4
b tes g qcquj	4
analysis scripts code gsea	4
mtxpwbv o fn https	4
any gene or cell	4
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gene expression data with	4
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sizes in scpnmf step	4
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results obtained on the	4
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memory usage of kallisto	4
a linear combination of	4
as part of a	4
expected proportion of subjects	4
site per cell division	4
knowledge discovery and data	4
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filter not plastid ti	4
b rqvmzs rmmc http	4
the interaction network between	4
is the probability of	4
max activation value is	4
b tes g dtjl	4
in the human genome	4
com b kjin ppxjz	4
the parental snp dataset	4
likely associated with ad	4
b tes g qrfns	4
and cell library sizes	4
s ribosomal rna gene	4
studies have shown that	4
were downloaded from the	4
to d isp la	4
information is available at	4
g m v a	4
strainflair or kraken for	4
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b tes g inhk	4
radboud university medical centre	4
the kernel density estimation	4
be used as an	4
d b y p	4
benchmarking of fli quantification	4
b tes g llbfv	4
g h tce http	4
the fact that the	4
zero mean and unit	4
u ag to dr	4
between structures per chromosome	4
minimizers lower bound fixed	4
plger diffutr paper https	4
it is desirable to	4
density of a minimizer	4
the informative genes selected	4
be found at https	4
lice n se to	4
a c to r	4
e bf d fa	4
mean and unit variance	4
the adjusted rand index	4
consensus assembly and lineage	4
genome sequences and annotations	4
on research in computational	4
on a subset of	4
window sizes between and	4
we hypothesized that the	4
and can be run	4
the national center for	4
rate and the turnover	4
p o ste d	4
very small human cohorts	4
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and passenger mutations from	4
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h o ld e	4
scores in bases and	4
an essential step in	4
a new generation of	4
visible to someone with	4
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so that it can	4
of differentially weighted edges	4
in supplemental information file	4
different types of cancer	4
position o b se	4
the neuralized clustering model	4
a amyloid lowering intervention	4
p rin t in	4
the identification of the	4
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a language and environment	4
be included in the	4
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glf ij qkb https	4
are associated with ad	4
the university of melbourne	4
of the united states	4
errors do not trigger	4
b tes g egnuo	4
in at least two	4
on knowledge discovery and	4
change and dispersion for	4
each snp in the	4
b tes g cxcxs	4
b y p e	4
d e n si	4
in the test set	4
by particlechromo d at	4
is the same for	4
using the poisson loss	4
the results show that	4
the united states of	4
bp blob e e	4
braak and cdr score	4
in kallistoalevin m em	4
b tes g ew	4
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uploaded directly by the	4
glm egs and inter	4
d f e b	4
the top of the	4
for each pair of	4
b tes g rmqgg	4
as the proportion of	4
the effects of the	4
the variance of the	4
ranked genes with ad	4
from the training data	4
linear version of the	4
can be explained by	4
n te d b	4
of one of the	4
the prr changes for	4
the pseudo targeted gene	4
that are used to	4
take into account the	4
genes in the unselected	4
the quality of reporting	4
sakai se santai rm	4
journal of antimicrobial chemotherapy	4
cells in the dataset	4
the machine learning model	4
university analyzer for variants	4
com pachterlab bp blob	4
bl change bl change	4
encyclopedia of dna elements	4
of a fragment within	4
history of the disease	4
informative gene selection and	4
of cell types and	4
the sequencing error rate	4
adverse drug reactions associated	4
both ribotyper and rrna	4
scripts code gsea bar	4
h hff npc tb	4
table and then clicking	4
in gene set gs	4
on the msbb dataset	4
lung adenocarcinoma transcript hgnc	4
design and analysis of	4
effect of intervention time	4
best of our knowledge	4
colored plot denotes the	4
prrs for various adrs	4
n si ty f	4
is ve rsio n	4
to someone with deuteranopia	4
colored by via pseudotime	4
an upper bound on	4
bf d fa dbbebd	4
an elevated mutation rate	3
highly invasive breast cancer	3
generate hypothetical scenarios of	3
the image data resource	3
corresponding by the best	3
of patients who were	3
yarza set and m	3
by combining the predictions	3
the negative genes were	3
described by mortazavi et	3
and shows the calculated	3
rna sequencing data analysis	3
r e fe re	3
in the reference genome	3
the expression level of	3
polar sets and link	3
within the normative modeling	3
of normalization methods for	3
there is not a	3
accurate integration of single	3
top most variable peaks	3
calculated using the svm	3
predicting the effects of	3
of the previous layer	3
rrna sensor and ribotyper	3
for publication not applicable	3
quantify the crucial role	3
linear regression and using	3
for local confidence values	3
by the best ari	3
in a normative model	3
detected by scatac or	3
number alteration profiles for	3
all overlapping mutations with	3
ji a er s	3
the mean and the	3
parental genome sequences were	3
jhxsou edit smartreference hpu	3
for the classification of	3
correlation between posterior means	3
university of delaware newark	3
with the leiden algorithm	3
subseries lecture notes in	3
shown in figure a	3
the leiden algorithm using	3
the ribodbmaker program is	3
and genome structure reconstruction	3
figure boxplot showing the	3
silico structural and molecular	3
ssnp totalsnp ratios and	3
simple linear regression with	3
is about x faster	3
than w bases apart	3
performance and statistical evaluation	3
all authors read and	3
articles examined by journal	3
a given window size	3
the case of a	3
the raw data and	3
bioinformatics and computational biology	3
of recent robust methods	3
design and implementation of	3
evaluate the quality of	3
inhibitors which bind to	3
or pathways with the	3
recognized by an an	3
values of the calculated	3
with turnover rate t	3
was used for this	3
to the query string	3
from the twosides v	3
biological variations of interest	3
for each gene and	3
b enrichment of the	3
number of articles examined	3
or more contacts in	3
reached the best results	3
genes in ppi networks	3
a proton pump inhibitor	3
be represented as a	3
an excel file containing	3
the fair cohort target	3
in the expression table	3
brain eqtl and atac	3
for translational medicine and	3
of the reliability ratios	3
intelligence and lecture notes	3
and clinical data from	3
as a tab separated	3
snvs in diploid tumour	3
gene networks in terms	3
network contains the top	3
the encyclopedia of dna	3
the notion of a	3
faster and uses less	3
for each found resolution	3
the mean abundance computed	3
ranked genes are associated	3
other types of ncrnas	3
carolina at chapel hill	3
ce c o u	3
smartreference pwzzqt v https	3
c al if or	3
proceedings of the conference	3
level profiling of metagenomic	3
the use of a	3
rows of an example	3
for the gene sets	3
data using data diffusion	3
single administrations of levothyroxine	3
the original and the	3
chromatin accessibility at binding	3
gains detected in adult	3
and provide a theoretical	3
discovery and data mining	3
fa ct or value	3
format for this field	3
cells in pale blue	3
two tfs associated with	3
pairs of fs methods	3
integrate any gene or	3
the simulated data true	3
drugs in the pre	3
is plotted as a	3
that may or may	3
partial cds ti not	3
the sliding window contained	3
the number of threads	3
tls ti not partial	3
passed rnammer and failed	3
the estimated turnover rate	3
node of the graph	3
in single cell resolution	3
the top high weight	3
to address this problem	3
the method can be	3
graph mining and transformer	3
com b kjin dmkfh	3
embryonic stem cell differentiation	3
metrics and used method	3
does not allow for	3
the us brain initiative	3
variance stabilization of single	3
edit smartreference onqq xmlfrf	3
a review of the	3
and prr predictions upon	3
receiver operating characteristic curve	3
a case where strainflair	3
ecosystem of metastatic melanoma	3
for a window size	3
the two classes of	3
physiology journal and volume	3
n se a va	3
are derived from the	3
provided in supplementary table	3
refined bert model achieves	3
to the requirements of	3
tcga breast cancer data	3
a b c d	3
the bottom of the	3
and biomarker identification using	3
rqvmzs j j https	3
trigger a genbank error	3
ranked genes were functionally	3
com b kjin h	3
the ldsep r package	3
trajectory analysis of agbm	3
the top right of	3
and predicting the effects	3
com b kjin ms	3
mouse organogenesis cell atlas	3
and applications of recent	3
there are currently no	3
reached a mean value	3
function and neurons for	3
label vector for sample	3
the same manner as	3
of a variety of	3
the expression levels of	3
from the original study	3
best ari achieved by	3
profiles for tumour and	3
simulated data true structure	3
raw no no yes	3
ribovore has been used	3
method for stochastic optimization	3
north carolina at chapel	3
this means that the	3
random train test splits	3
plot for motif z	3
the log of the	3
distribution in yellow indicate	3
ensemble model consisting of	3
number of genes selected	3
seq highlights intratumoral heterogeneity	3
gene panels that are	3
a ms a e	3
efficiently recovers cell populations	3
neighbourhood clustering results from	3
adrs associated with the	3
in this work we	3
alveolar type ii cells	3
the number of motifs	3
to the lack of	3
cancer data set has	3
than the mean of	3
in a is the	3
short read alignment with	3
tet profiles of drugs	3
of subjects within cohorts	3
and john c marioni	3
a gaussian process term	3
when using only the	3
of thousands of cells	3
on simulated and real	3
strainflair and kraken give	3
triku efficiently recovers cell	3
cdr on the msbb	3
most recent and promising	3
at binding motifs for	3
a different set of	3
site of marv vp	3
of predicted genes with	3
of hpv integration in	3
on y a r	3
automatically downloaded to the	3
figure results obtained on	3
seurat articles v changes	3
to generate hypothetical scenarios	3
size of the vocabulary	3
x dataset of human	3
for the downstream analysis	3
administrations of levothyroxine and	3
upon alteration of the	3
at mb and kb	3
not be able to	3
the cell lineage tree	3
the receiver operating characteristic	3
top predicted genes with	3
the major and minor	3
calculated by using the	3
the log count matrix	3
most of the existing	3
used to produce the	3
pseudotime trajectory analysis of	3
kjin kb e http	3
of the tet profile	3
kb resolution for the	3
the distance between two	3
estimates the null distribution	3
models built from different	3
selected by fs methods	3
the human and mouse	3
the sparc dataset structure	3
c rqvmzs wpg tqet	3
plotted as a function	3
variance and zero mean	3
prediction of protein secondary	3
relative abundances of the	3
defined as the proportion	3
to build the model	3
neck squamous cell carcinoma	3
auto cov pipeline havoc	3
axis denotes the swarm	3
kyoto encyclopedia of genes	3
and kraken give similar	3
the four ribovore programs	3
number of mutations is	3
between age and cortical	3
concept of polar sets	3
in the ldsep r	3
more specific to the	3
com c rqvmzs vqgd	3
s in the supplementary	3
disjoint subsets of the	3
polar set can be	3
visualization and cell type	3
the expected vaf for	3
in line with a	3
a theoretical justification for	3
the first principal component	3
the cells in that	3
in the range of	3
a web resource for	3
visualizing data using t	3
samples identified using both	3
a machine learning model	3
summary statistics datasets in	3
fe re n ce	3
in order to obtain	3
regulation of cell death	3
small number of covariates	3
correlate with quinolone resistance	3
approval and consent to	3
the evaluation of the	3
association for computational linguistics	3
to a latent space	3
a significant difference in	3
between posterior mean genotypes	3
human protein kinase domains	3
data using regularized negative	3
based on any column	3
genes according to the	3
schema for identifying each	3
obtained from the ncbi	3
centre for youth mental	3
for a better identification	3
the empirical null distribution	3
least one anchor vertex	3
ti not partial cds	3
cannot be explained by	3
com b kjin cdsll	3
the cancer gene census	3
friendly resources that offer	3
with the aim to	3
distribution of chromvar motif	3
feature selection for scrnaseq	3
quality assembled genome sequences	3
for genome data submission	3
to take into account	3
times as much peak	3
a snp is likely	3
of niagads gwas summary	3
due to the lack	3
reference strains relative abundances	3
pathways with the decile	3
was greater than the	3
total link energy is	3
to zero mean and	3
count matrices were downloaded	3
pe r b as	3
used in conjunction with	3
chromvar motif scores in	3
mutant reads out of	3
best metric was the	3
is compared to the	3
length isoform quantification from	3
was used to derive	3
used to compute the	3
by melsted et al	3
m to the polar	3
simulated and real data	3
the lower bound on	3
to trnas that are	3
jhxsou edit smartreference onqq	3
both the ssnp totalsnp	3
tes g ups l	3
cell biology papers and	3
the genome of drosophila	3
level gains detected in	3
encyclopedia of genes and	3
a convolutional neural network	3
of cells composing the	3
a mean value equal	3
used to determine the	3
boxplot showing the values	3
tumor cells killed and	3
among the discovered clusters	3
latent gene and cell	3
number of patients who	3
the entropy of the	3
totalsnp ratios and the	3
the metrics calculated for	3
a genbank error if	3
regression with an additive	3
provides an overview of	3
not work as well	3
and accurate integration of	3
novel computational approach to	3
mer from the polar	3
shown in figure b	3
to be enriched in	3
of a variation graph	3
to unit variance and	3
ct or value of	3
used to identify the	3
some of the major	3
each of the targets	3
of each snp in	3
the development of the	3
n ce c o	3
that the last k	3
with precomputed hmm profiles	3
achieved a mean ari	3
wellcome trust genome campus	3
are compatible with the	3
in the parental lines	3
yes mixture of human	3
cells using nanoliter droplets	3
us to obtain distinct	3
the host response subgraph	3
severe acute respiratory syndrome	3
with the decile enrichment	3
theory and applications of	3
by a subset of	3
is represented by a	3
the effects of single	3
represented in these networks	3
the context of a	3
were identified by applying	3
the rrna sensor program	3
the component will check	3
model inference speed is	3
genes in the training	3
for feature matrix construction	3
heterogeneity in primary glioblastoma	3
details the ensembl gene	3
on the yarza set	3
bfimpute scimpute saver viper	3
method can be used	3
were used for feature	3
then used to build	3
age and sex as	3
the group of interest	3