This is a table of type bigram and their frequencies. Use it to search & browse the list to learn more about your study carrel.
bigram | frequency |
---|---|
et al | 1443 |
biorxiv preprint | 1028 |
posted february | 1027 |
copyright holder | 1027 |
version posted | 1027 |
author funder | 1027 |
peer review | 1021 |
preprint https | 981 |
org licenses | 871 |
granted biorxiv | 860 |
preprintthis version | 818 |
org google | 675 |
international licenseavailable | 651 |
hsltkm https | 571 |
made available | 289 |
gene expression | 204 |
seq data | 194 |
international licenseperpetuity | 137 |
thisthis version | 137 |
cell rna | 131 |
vtwe pe | 129 |
io view | 129 |
view corchea | 128 |
pe https | 127 |
associated genes | 126 |
nucleic acids | 111 |
cell types | 107 |
sequencing data | 106 |
ssu rrna | 96 |
data set | 95 |
allowed without | 93 |
reuse allowed | 93 |
rights reserved | 93 |
without permission | 93 |
data sets | 92 |
polar set | 92 |
com document | 90 |
edit smartreference | 89 |
ofupuwd jhxsou | 89 |
jhxsou edit | 89 |
ue ofupuwd | 89 |
acids res | 88 |
ranked genes | 86 |
breast cancer | 85 |
tumor cells | 84 |
polar sets | 84 |
cell type | 80 |
machine learning | 79 |
also made | 74 |
cc license | 74 |
government work | 74 |
us government | 74 |
gene set | 71 |
deep learning | 70 |
supplementary fig | 66 |
wasthis version | 65 |
international licenseunder | 65 |
quality control | 64 |
differential expression | 60 |
fs methods | 59 |
expression data | 58 |
simulated data | 57 |
site effects | 56 |
training set | 56 |
genome sequences | 55 |
data analysis | 55 |
gene selection | 54 |
test set | 54 |
seq datasets | 52 |
link energy | 52 |
supplementary table | 52 |
gene sets | 51 |
genome biology | 51 |
rna sequencing | 51 |
genome sequencing | 51 |
cell data | 51 |
targeted gene | 50 |
rrna sequences | 50 |
gene profiling | 49 |
rrna sensor | 49 |
whole genome | 48 |
supplementary materials | 47 |
drug repurposing | 47 |
cancer cells | 46 |
supplementary figure | 45 |
lsu rrna | 45 |
seq dataset | 44 |
single cell | 44 |
hierarchical bayesian | 44 |
weight matrix | 44 |
amino acid | 43 |
cancer mutations | 42 |
universal hitting | 42 |
turnover rate | 42 |
summary statistics | 42 |
driver mutations | 41 |
reference genome | 40 |
fully automated | 40 |
mutation rate | 40 |
de bruijn | 40 |
swarm size | 40 |
least one | 39 |
resolution whole | 39 |
latent space | 39 |
wide association | 39 |
informative genes | 39 |
genes selected | 39 |
cortical thickness | 38 |
linear model | 38 |
glm egs | 38 |
integration sites | 37 |
ribosomal rna | 37 |
preprint arxiv | 37 |
automated approach | 37 |
small rna | 37 |
arxiv preprint | 37 |
expression analysis | 36 |
target set | 36 |
read counts | 36 |
total number | 35 |
real data | 35 |
cancer cell | 35 |
househam et | 35 |
sample size | 35 |
data using | 35 |
dropout events | 34 |
reference sequence | 34 |
linear regression | 33 |
dimensionality reduction | 33 |
layered polar | 33 |
specific minimizers | 32 |
differentially expressed | 32 |
yes yes | 32 |
axis denotes | 32 |
normative models | 32 |
international conference | 32 |
hitting set | 32 |
tet profile | 32 |
bi tio | 32 |
hi bi | 32 |
go terms | 32 |
preprint http | 31 |
copy number | 31 |
activation value | 31 |
hitting sets | 31 |
nitrogen content | 31 |
neural networks | 31 |
variation graph | 31 |
protein kinase | 30 |
bmc bioinformatics | 30 |
annotation matrix | 30 |
throughput sequencing | 29 |
passenger mutations | 29 |
loss function | 29 |
lower bound | 29 |
see supplementary | 29 |
ssnp totalsnp | 29 |
dimensional space | 29 |
cancer data | 29 |
computer science | 28 |
gene ontology | 28 |
acids research | 28 |
see methods | 28 |
error rate | 28 |
hpv integration | 28 |
ensg ense | 28 |
feature selection | 28 |
cell biology | 28 |
matrix factorization | 27 |
disease progression | 27 |
tangherloni et | 27 |
selected genes | 27 |
plos one | 27 |
competing interests | 27 |
single cells | 26 |
cancer genome | 26 |
realistic data | 26 |
randomly selected | 26 |
based methods | 26 |
raw data | 26 |
based approach | 26 |
human genome | 26 |
predicted genes | 26 |
compositional data | 26 |
seq hom | 26 |
optimal solutions | 26 |
nature methods | 26 |
sparc data | 26 |
de analysis | 25 |
computational biology | 25 |
publicly available | 25 |
full length | 25 |
refined bert | 25 |
synonymous motifs | 25 |
reliability ratios | 25 |
chromatin accessibility | 25 |
best ae | 25 |
neural network | 25 |
en ge | 24 |
false positive | 24 |
seq analysis | 24 |
window size | 24 |
remdesivir drc | 24 |
data structure | 24 |
imputation methods | 24 |
ig en | 24 |
local confidence | 24 |
genome biol | 24 |
ge ne | 24 |
downstream analysis | 24 |
turnover rates | 24 |
mapped reads | 24 |
running time | 24 |
generalized linear | 23 |
scale bars | 23 |
parental genome | 23 |
cancer types | 23 |
genes based | 23 |
global confidence | 23 |
peak memory | 23 |
tested dimension | 23 |
type ii | 23 |
precision medicine | 23 |
amyloid lowering | 23 |
linear models | 23 |
curation team | 22 |
informative gene | 22 |
random minimizer | 22 |
expression matrix | 22 |
chr chr | 22 |
cell communication | 22 |
drug discovery | 22 |
upper bound | 22 |
best results | 22 |
isoform quantification | 22 |
selection methods | 22 |
principal component | 21 |
learning models | 21 |
nature reviews | 21 |
target genes | 21 |
data curation | 21 |
pik ca | 21 |
specific density | 21 |
two different | 21 |
cell surface | 21 |
null distribution | 21 |
large number | 21 |
across different | 21 |
fs method | 21 |
bulk data | 21 |
pearson correlation | 21 |
figure shows | 21 |
pca followed | 21 |
false discovery | 21 |
association studies | 21 |
associated adrs | 20 |
benchmarking datasets | 20 |
different types | 20 |
gwas summary | 20 |
small number | 20 |
new data | 20 |
cna segments | 20 |
normative modeling | 20 |
random sequence | 20 |
latent variables | 20 |
sliding window | 20 |
commonly used | 20 |
methylation detection | 20 |
escherichia coli | 20 |
svm model | 20 |
sample sizes | 20 |
window sizes | 20 |
standard deviation | 20 |
enrichment analysis | 20 |
com eqnedit | 20 |
neuroimaging data | 20 |
bruijn graph | 20 |
drug interactions | 19 |
structural variant | 19 |
based figures | 19 |
nucleotide sequences | 19 |
mean ari | 19 |
genome assembly | 19 |
microscope images | 19 |
relative abundances | 19 |
downstream analyses | 19 |
cell fates | 19 |
random forest | 19 |
nat methods | 19 |
gene modules | 19 |
amino acids | 19 |
national academy | 19 |
count matrix | 19 |
excel file | 19 |
van der | 19 |
structure reconstruction | 19 |
sequencing errors | 19 |
molecular biology | 18 |
different cell | 18 |
confidence values | 18 |
transcription factor | 18 |
linkage disequilibrium | 18 |
kinase family | 18 |
allele frequency | 18 |
imaging data | 18 |
receptive field | 18 |
different strategies | 18 |
drug pair | 18 |
existing methods | 18 |
colored path | 18 |
see section | 18 |
results show | 18 |
activation values | 18 |
phase separation | 18 |
training data | 18 |
nature communications | 18 |
org https | 18 |
ground truth | 18 |
nanopore methylation | 18 |
significant structural | 18 |
relative position | 18 |
secondary structure | 17 |
tumor growth | 17 |
cell lines | 17 |
case study | 17 |
molecular docking | 17 |
classification models | 17 |
glucose metabolism | 17 |
stem cell | 17 |
gene level | 17 |
drug pairs | 17 |
profiling data | 17 |
terminal states | 17 |
fortin et | 17 |
driver genes | 17 |
input data | 17 |
cell death | 17 |
tet profiles | 17 |
dimensional representation | 17 |
specific genes | 17 |
cell populations | 17 |
false positives | 17 |
statistical analysis | 17 |
obtained using | 17 |
library sizes | 17 |
edge weights | 17 |
intervention time | 17 |
cell division | 17 |
adult gbm | 17 |
generation sequencing | 17 |
transcriptional regulatory | 17 |
wide range | 17 |
scale information | 17 |
cell cycle | 17 |
active site | 17 |
inhibitor non | 17 |
cg sssi | 16 |
gene networks | 16 |
results obtained | 16 |
genome atlas | 16 |
discovery rate | 16 |
hypothesis generation | 16 |
raloxifene log | 16 |
kia et | 16 |
new york | 16 |
clinical trials | 16 |
subject studies | 16 |
egs method | 16 |
nat biotechnol | 16 |
gene expressions | 16 |
targeted capture | 16 |
variant method | 16 |
bert model | 16 |
cancer genomes | 16 |
genome sequence | 16 |
cell library | 16 |
stem cells | 16 |
utr usage | 16 |
embryonic stem | 16 |
read mapping | 16 |
data science | 16 |
statistics datasets | 16 |
national institutes | 16 |
cell gene | 16 |
epithelial cells | 16 |
cohort sizes | 16 |
statistic value | 16 |
predicted values | 16 |
basis selection | 16 |
abide data | 16 |
calculated using | 16 |
different datasets | 16 |
rand index | 16 |
tumor types | 16 |
expression levels | 16 |
human papillomavirus | 16 |
mixture model | 16 |
kinase families | 16 |
biological processes | 16 |
gaussian process | 15 |
expression level | 15 |
convolutional layer | 15 |
nearest neighbors | 15 |
evaluation metrics | 15 |
jaccard index | 15 |
zhang et | 15 |
component analysis | 15 |
supplementary material | 15 |
feature extraction | 15 |
sparse log | 15 |
genome browser | 15 |
ra te | 15 |
reference genomes | 15 |
functional genomics | 15 |
residual permutation | 15 |
siamese network | 15 |
particle swarm | 15 |
sequence similarity | 15 |
gm cell | 15 |
batch effects | 15 |
support vector | 15 |
memory usage | 15 |
cell line | 15 |
sequence alignment | 15 |
specific gene | 14 |
gmmmd followed | 14 |
see fig | 14 |
data structures | 14 |
thickness measures | 14 |
adjusted rand | 14 |
blastn databases | 14 |
significantly higher | 14 |
correlation coefficient | 14 |
somatic mutations | 14 |
consensus sequence | 14 |
rrna sequence | 14 |
association study | 14 |
modified combat | 14 |
mutual information | 14 |
bruijn graphs | 14 |
bases away | 14 |
learning sparse | 14 |
input sequence | 14 |
label prediction | 14 |
scale bar | 14 |
kernel density | 14 |
chemical structures | 14 |
random walk | 14 |
authors declare | 14 |
totalsnp ratio | 14 |
negative binomial | 14 |
swarm optimization | 14 |
brain imaging | 14 |
original research | 14 |
regulatory network | 14 |
tumor microenvironment | 14 |
standard errors | 14 |
fastq files | 14 |
united states | 14 |
cohort target | 14 |
coding rna | 14 |
tcga breast | 14 |
plant science | 14 |
ligand type | 14 |
fold change | 14 |
interaction network | 14 |
bayesian models | 14 |
idealized data | 14 |
validation experiments | 14 |
refseq records | 14 |
missense mutations | 14 |
image data | 14 |
sequencing depth | 14 |
nature biotechnology | 14 |
even though | 14 |
integration events | 14 |
manually annotated | 13 |
functional prediction | 13 |
patient set | 13 |
siamese embedding | 13 |
sample evaluation | 13 |
drug combinations | 13 |
hierarchical clustering | 13 |
see figure | 13 |
dcnn model | 13 |
cancer mutation | 13 |
brain cancer | 13 |
protein sequence | 13 |
random variable | 13 |
hts data | 13 |
related phenotypes | 13 |
length isoform | 13 |
structures generated | 13 |
bert models | 13 |
genetic subclones | 13 |
statistic values | 13 |
adversarial clustering | 13 |
nature genetics | 13 |
per cell | 13 |
means clustering | 13 |
mutation effect | 13 |
general purpose | 13 |
fixed interval | 13 |
ovarian cancer | 13 |
si ty | 13 |
ari values | 13 |
com dcgerard | 13 |
objective function | 13 |
genomic region | 13 |
compiled ad | 13 |
relative abundance | 13 |
large datasets | 13 |
protein interaction | 13 |
functional annotation | 13 |
metadata files | 13 |
niagads genomicsdb | 13 |
chromosome arm | 13 |
systems biology | 13 |
use case | 13 |
data used | 13 |
total link | 13 |
squamous cell | 13 |
density estimation | 13 |
permit list | 13 |
analysis using | 13 |
silhouette coefficient | 13 |
generated using | 13 |
dna sequencing | 13 |
comparison models | 13 |
supplementary information | 13 |
highly expressed | 13 |
reference sequences | 13 |
performed using | 13 |
coding rnas | 13 |
malekian et | 13 |
cell migration | 13 |
reliability ratio | 13 |
monte carlo | 13 |
protein sequences | 13 |
high confidence | 13 |
latent variable | 13 |
protein kinases | 13 |
set gs | 13 |
parameter settings | 13 |
human reference | 13 |
type labels | 13 |
multiple sequence | 13 |
rna profile | 13 |
cts size | 13 |
immune response | 13 |
uniform coverage | 13 |
clustering explanation | 13 |
data projection | 12 |
mean expression | 12 |
information processing | 12 |
cell groups | 12 |
simulation study | 12 |
disease severity | 12 |
null hypothesis | 12 |
cancer res | 12 |
kb resolution | 12 |
counts distribution | 12 |
fold cross | 12 |
permutation approach | 12 |
ccf computation | 12 |
similar results | 12 |
see table | 12 |
highly similar | 12 |
peak analysis | 12 |
single nucleotide | 12 |
rrna gene | 12 |
basset model | 12 |
american journal | 12 |
peripheral blood | 12 |
combinatorial optimization | 12 |
wellcome trust | 12 |
sci rep | 12 |
original annotation | 12 |
random minimizers | 12 |
sequencing error | 12 |
feature representation | 12 |
feed forwad | 12 |
convolutional neural | 12 |
genbank indexers | 12 |
genome data | 12 |
color blindness | 12 |
expression values | 12 |
genomics data | 12 |
effect size | 12 |
different methods | 12 |
clustering methods | 12 |
software package | 12 |
ncbi taxonomy | 12 |
wide cna | 12 |
sample set | 12 |
sequence analysis | 12 |
rqvmzs cxxa | 12 |
user interface | 12 |
quinn et | 12 |
mimicking peptides | 12 |
density factor | 12 |
mononuclear cells | 12 |
pbmc datasets | 12 |
long non | 12 |
tumor stage | 12 |
zero counts | 12 |
allows us | 12 |
housekeeping genes | 12 |
processing systems | 12 |
transcript length | 12 |
negative matrix | 12 |
regulatory networks | 12 |
expressed genes | 12 |
deep neural | 12 |
known ad | 12 |
national center | 12 |
ad values | 12 |
scatac data | 12 |
snp dataset | 12 |
marburg virus | 12 |
atp binding | 12 |
learning model | 12 |
genomic data | 12 |
plant sciences | 12 |
differential utr | 12 |
mean value | 12 |
trait associations | 12 |
wolfers et | 12 |
marquand et | 12 |
data points | 12 |
poisson loss | 12 |
normative model | 12 |
expressed isoforms | 12 |
dna sequence | 12 |
previous layer | 12 |
back pocket | 12 |
capture sequencing | 12 |
first layer | 12 |
higher scc | 12 |
simulated dataset | 12 |
genome res | 12 |
effect sizes | 12 |
supplementary figures | 12 |
error rates | 12 |
big data | 12 |
cell transcriptomics | 12 |
involving atorvastatin | 12 |
interval sampling | 12 |
neighbourhood graph | 11 |
pooling layer | 11 |
corresponding author | 11 |
og en | 11 |
motif sequences | 11 |
individual cells | 11 |
mutation taster | 11 |
bert refined | 11 |
cell level | 11 |
learning algorithms | 11 |
coding dna | 11 |
reference data | 11 |
gene number | 11 |
cancer patients | 11 |
cell differentiation | 11 |
nat rev | 11 |
blood mononuclear | 11 |
mmdae followed | 11 |
path length | 11 |
computational time | 11 |
time points | 11 |
mutation data | 11 |
kinase phylogenetic | 11 |
itr og | 11 |
combination therapy | 11 |
totalsnp ratios | 11 |
author contributions | 11 |
lia na | 11 |
genes proteins | 11 |
cells killed | 11 |
independent test | 11 |
bert basic | 11 |
hot encoded | 11 |
full set | 11 |
real datasets | 11 |
biological process | 11 |
drug metab | 11 |
copy states | 11 |
exact test | 11 |
nitrogen atoms | 11 |
supplementary section | 11 |
cohort size | 11 |
pinto et | 11 |
true structure | 11 |
cell sequencing | 11 |
maximum likelihood | 11 |
ur ea | 11 |
figure legends | 11 |
fold changes | 11 |
input variables | 11 |
de novo | 11 |
expression profiles | 11 |
expression across | 11 |
clinical groups | 11 |
repeated cross | 11 |
accession number | 11 |
posterior means | 11 |
nb loss | 11 |
physiology journal | 11 |
cell hi | 11 |
quinolone resistance | 11 |
hitting time | 11 |
cell fate | 11 |
compression complexity | 11 |
colorblind safe | 11 |
posterior mean | 11 |
gov pubmed | 11 |
confidence interval | 11 |
gene identification | 11 |
hidden units | 11 |
development team | 11 |
per arm | 11 |
much lower | 11 |
time complexity | 11 |
scientific community | 11 |
intervention strategies | 11 |
markov chain | 11 |
many different | 11 |
sequence data | 11 |
rqvmzs ic | 11 |
effect prediction | 11 |
true counts | 11 |
enriched go | 11 |
amplified cells | 11 |
figure panel | 11 |
sparc dataset | 11 |
ingroup analysis | 11 |
first two | 11 |
vcf files | 11 |
data model | 11 |
rna fragments | 11 |
three different | 11 |
ld estimates | 11 |
clustering results | 11 |
decoupled motifs | 11 |
confidence coefficient | 11 |
source code | 11 |
phylogenetic group | 11 |
te ns | 11 |
neural information | 11 |
scpnmf step | 11 |
genome research | 11 |
per million | 11 |
js distance | 11 |
somatic mutation | 11 |
van den | 11 |
energy surplus | 11 |
three models | 11 |
allele frequencies | 11 |
research articles | 11 |
cell lineage | 11 |
preprint mailto | 11 |
kinase structures | 11 |
adverse drug | 11 |
leiden algorithm | 11 |
small molecules | 11 |
cell interactions | 11 |
conversion factor | 11 |
chromosome conformation | 11 |
gbm samples | 11 |
cell divisions | 11 |
ha lia | 11 |
maximum activation | 11 |
average expression | 11 |
related genes | 11 |
two types | 11 |
sparc curation | 11 |
log fc | 10 |
carnivorous plant | 10 |
profile hmm | 10 |
based approaches | 10 |
interaction networks | 10 |
reduced features | 10 |
antibiotic resistance | 10 |
prr changes | 10 |
optimization problem | 10 |
cell transcriptomic | 10 |
functional gene | 10 |
different fs | 10 |
bayesian model | 10 |
pass fail | 10 |
dna sequences | 10 |
pooling size | 10 |
transcriptome analysis | 10 |
max activation | 10 |
statistic method | 10 |
biomedical research | 10 |
stan development | 10 |
supplemental figure | 10 |
optimal cts | 10 |
attention feed | 10 |
surface receptors | 10 |
two cohorts | 10 |
three main | 10 |
predicting ad | 10 |
freely available | 10 |
transcriptomic data | 10 |
model inference | 10 |
bulk rna | 10 |
optimal polar | 10 |
genetic variation | 10 |
novel candidate | 10 |
cancer institute | 10 |
ix http | 10 |
based feature | 10 |
predictive accuracy | 10 |
web server | 10 |
empirical bayes | 10 |
rna hgnc | 10 |
two main | 10 |
binding energy | 10 |
fry pipeline | 10 |
subunit ribosomal | 10 |
drug reactions | 10 |
bmc genomics | 10 |
neck cancer | 10 |
association analysis | 10 |
positive genes | 10 |
bulk genome | 10 |
set bits | 10 |
weight genes | 10 |
natural language | 10 |
raw dataset | 10 |
cell transcriptome | 10 |
pymol sessions | 10 |
liquid phase | 10 |
composite score | 10 |
conformation capture | 10 |
default parameters | 10 |
frequency spectrum | 10 |
variation graphs | 10 |
national institute | 10 |
statistical power | 10 |
phosphorylation events | 10 |
top right | 10 |
methods section | 10 |
ddis involving | 10 |
lsu sequences | 10 |
malignant cells | 10 |
closely related | 10 |
effect removal | 10 |
bulk sequencing | 10 |
associated gene | 10 |
sparc datasets | 10 |
images show | 10 |
hong kong | 10 |
teleporting random | 10 |
supplementary note | 10 |
additional information | 10 |
expressed isoform | 10 |
lung adenocarcinoma | 10 |
reference standard | 10 |
data repository | 10 |
search results | 10 |
normal cells | 10 |
experimental data | 10 |
nalidixic acid | 10 |
human brain | 10 |
bayesian framework | 10 |
codon usage | 10 |
biomarker identification | 10 |
gene interactions | 10 |
html https | 10 |
high weight | 10 |
graph representation | 10 |
bayesian linear | 10 |
graph construction | 10 |
better performance | 10 |
clinical outcomes | 10 |
kirchoff et | 10 |
dimensional embeddings | 10 |
cell carcinoma | 10 |
kernel size | 10 |
based analysis | 10 |
previous work | 10 |
set problem | 10 |
seq studies | 10 |
tumour purity | 10 |
prediction accuracy | 10 |
rqvmzs wpg | 10 |
first step | 10 |
also provide | 10 |
broad institute | 10 |
cell growth | 10 |
analysis results | 10 |
isoform level | 10 |
lecture notes | 10 |
human embryonic | 9 |
data files | 9 |
experimental design | 9 |
recently published | 9 |
endothelial cells | 9 |
genomic features | 9 |
cell group | 9 |
chain monte | 9 |
quantification accuracy | 9 |
feature map | 9 |
data integration | 9 |
highly variable | 9 |
optimization algorithm | 9 |
edge weight | 9 |
dimension reduction | 9 |
field size | 9 |
derived rna | 9 |
imputed data | 9 |
zero mean | 9 |
normal tissue | 9 |
consensus sequences | 9 |
rare diseases | 9 |
exon count | 9 |
seq expressions | 9 |
file detailing | 9 |
normal tissues | 9 |
fail sequences | 9 |
bacterial species | 9 |
cancer research | 9 |
combat model | 9 |
candidate genes | 9 |
sequence length | 9 |
total energy | 9 |
arm level | 9 |
forwad attention | 9 |
dimensional embedding | 9 |
definition lines | 9 |
repurposing screening | 9 |
statistically significant | 9 |
command line | 9 |
knowledge graph | 9 |
model performance | 9 |
selection method | 9 |
derived fragments | 9 |
genetic evidence | 9 |
fusion points | 9 |
gene regulation | 9 |
differentially weighted | 9 |
dr af | 9 |
best hit | 9 |
web resource | 9 |
mmdvae followed | 9 |
region sample | 9 |
open source | 9 |
modeling site | 9 |
associated mirnas | 9 |
hidden layer | 9 |
lowly expressed | 9 |
lineage tree | 9 |
electron microscope | 9 |
data types | 9 |
biofilm dispersal | 9 |
colorectal cancer | 9 |
count data | 9 |
data processing | 9 |
wilcoxon test | 9 |
additional file | 9 |
boxplot showing | 9 |
subjects per | 9 |
like compounds | 9 |
plos comput | 9 |
kjin cdsll | 9 |
genes using | 9 |
factor binding | 9 |
artificial datasets | 9 |
done using | 9 |
across datasets | 9 |
pic datasets | 9 |
substrate multi | 9 |
computed using | 9 |
compatible minimizer | 9 |
com pachterlab | 9 |
niagads gwas | 9 |
unexpected features | 9 |
data submission | 9 |
tumor sample | 9 |
learning methods | 9 |
snp indel | 9 |
international journal | 9 |
bioinformatics btz | 9 |
identified using | 9 |
performance measures | 9 |
quantile empirical | 9 |
pairwise log | 9 |
simulated datasets | 9 |
bustools pipeline | 9 |
primary data | 9 |
binding region | 9 |
vcf file | 9 |
ti methods | 9 |
multiple testing | 9 |
original paper | 9 |
genetic variants | 9 |
li et | 9 |
causal genes | 9 |
neighborhood features | 9 |
convolutional layers | 9 |
feature maps | 9 |
human protein | 9 |
input sequences | 9 |
antisense rna | 9 |
linked blocks | 9 |
four different | 9 |
mutually exclusive | 9 |
average cortical | 9 |
host gene | 9 |
quinn erb | 9 |
performance metrics | 9 |
target gene | 9 |
bases apart | 9 |
real dataset | 9 |
phylogenetic groups | 9 |
computational approach | 9 |
dataset contains | 9 |
larger datasets | 9 |
probability distributions | 9 |
currently available | 9 |
type prediction | 9 |
query string | 9 |
rqvmzs chqb | 9 |
label label | 9 |
rqvmzs vqgd | 9 |
set enrichment | 9 |
jaccard distance | 9 |
clinical data | 9 |
natl acad | 9 |
data point | 9 |
total snps | 9 |
gene sequences | 9 |
repurposing drugs | 9 |
variant calling | 9 |
snp calling | 9 |
public health | 9 |
brain fgn | 9 |
sequencing technology | 9 |
mapping reads | 9 |
randomly sampled | 9 |
motif syntax | 9 |
vector contamination | 9 |
two methods | 9 |
cancer genes | 9 |
basic bert | 9 |
data sharing | 9 |
knowledge graphs | 9 |
expression omnibus | 9 |
hidden markov | 9 |
pachterlab bp | 9 |
human cancer | 9 |
tumor cell | 9 |
quantification methods | 9 |
nine data | 9 |
logistic regression | 9 |
results suggest | 9 |
pubmed https | 9 |
ad traits | 9 |
usa department | 9 |
rqvmzs fjzp | 9 |
anchor vertices | 9 |
prokaryotic ssu | 9 |
protvec embedding | 9 |
biomedical informatics | 9 |
hippocampus samples | 9 |
en si | 9 |
rnaseq data | 9 |
features selected | 9 |
frequency method | 9 |
average prr | 8 |
github repository | 8 |
tumour genome | 8 |
ravlt forgetting | 8 |
wgs filter | 8 |
peak detection | 8 |
edu https | 8 |
full list | 8 |
feature representations | 8 |
rob patro | 8 |
set condition | 8 |
statistical computing | 8 |
construction time | 8 |
rqvmzs tcb | 8 |
analysis tools | 8 |
rv ed | 8 |
allows users | 8 |
minimizer compatible | 8 |
anchor assignment | 8 |
jain et | 8 |
genomic distributions | 8 |
mrna filter | 8 |
synonymous mutations | 8 |
cell population | 8 |
superior performance | 8 |
cluster labels | 8 |
vp protein | 8 |
host response | 8 |
colored paths | 8 |
remaining genes | 8 |
human cancers | 8 |
subjects within | 8 |
expected vaf | 8 |
prostate cancer | 8 |
activation loop | 8 |
research council | 8 |
cancer detection | 8 |
birth rate | 8 |
better results | 8 |
research community | 8 |
important role | 8 |
tls ti | 8 |
surface receptor | 8 |
molecular unit | 8 |
hg systems | 8 |
case studies | 8 |
desktop application | 8 |
thioguanosine log | 8 |
exon usage | 8 |
cancer genomics | 8 |
expression profiling | 8 |
de transcripts | 8 |
may include | 8 |
main text | 8 |
count vectorizer | 8 |
six liver | 8 |
genomic dna | 8 |
compatible minimizers | 8 |
marv vp | 8 |
cancer classification | 8 |
human cohorts | 8 |
feature matrix | 8 |
rqvmzs tmou | 8 |
also provides | 8 |
human genes | 8 |
small human | 8 |
information retrieval | 8 |
zheng et | 8 |
genes whose | 8 |
line options | 8 |
different cancer | 8 |
rqvmzs uxwc | 8 |
estimated turnover | 8 |
neuroimaging initiative | 8 |
genome annotation | 8 |
differential analysis | 8 |
cell atlas | 8 |
results showed | 8 |
progenitor cells | 8 |
proton pump | 8 |
rqvmzs ueke | 8 |
low nitrogen | 8 |
type specific | 8 |
plot shows | 8 |
metagenomic samples | 8 |
future work | 8 |
semantic graph | 8 |
different time | 8 |
psi values | 8 |
pooling operation | 8 |
new england | 8 |
variant reports | 8 |
per sequence | 8 |
org abs | 8 |
functional evidence | 8 |
noncoding rnas | 8 |
ligand types | 8 |
accurately predict | 8 |
disease neuroimaging | 8 |
transcription factors | 8 |
intron signal | 8 |
rqvmzs mwfz | 8 |
rqvmzs ix | 8 |
science foundation | 8 |
kallisto alevin | 8 |
functionally related | 8 |
kinase conformations | 8 |
birnn model | 8 |
cdr score | 8 |
data availability | 8 |
reference graph | 8 |
rqvmzs bhgv | 8 |
high throughput | 8 |
size reduction | 8 |
site frequency | 8 |
selected weight | 8 |
output structure | 8 |
bulk parent | 8 |
size values | 8 |
dcgerard ldsep | 8 |
lowering intervention | 8 |
phage genomes | 8 |
mcmc simulations | 8 |
mca datasets | 8 |
methods like | 8 |
data mining | 8 |
charged contexts | 8 |
england journal | 8 |
euclidean distance | 8 |
immune cells | 8 |
level abundances | 8 |
seq reveals | 8 |
also found | 8 |
next generation | 8 |
similar cells | 8 |
mutant reads | 8 |
wild type | 8 |
uniform manifold | 8 |
clinical endpoints | 8 |
eukaryotic ssu | 8 |
project administration | 8 |
test sets | 8 |
average ari | 8 |
mbf biosciences | 8 |
analysis scripts | 8 |
liver samples | 8 |
viral integration | 8 |
read count | 8 |
los angeles | 8 |
energy deficit | 8 |
across cells | 8 |
mean abundance | 8 |
motif mixture | 8 |
new view | 8 |
fusion point | 8 |
gm datasets | 8 |
smartreference ruyzz | 8 |
significant difference | 8 |
bayesian approach | 8 |
comput biol | 8 |
small sample | 8 |
validation set | 8 |
nelfinavir drc | 8 |
anisomycin log | 8 |
different conformations | 8 |
bfimpute improves | 8 |
lung cancer | 8 |
prediction algorithms | 8 |
parameter values | 8 |
massively parallel | 8 |
target group | 8 |
default parameter | 8 |
group group | 8 |
focal amplifications | 8 |
differential exon | 8 |
random walks | 8 |
agbm sample | 8 |
semantic type | 8 |
cell technologies | 8 |
standard deviations | 8 |
individual target | 8 |
viral infection | 8 |
squared errors | 8 |
expression matrices | 8 |
density estimates | 8 |
omics data | 8 |
dataset description | 8 |
expression analyses | 8 |
research institute | 8 |
scc value | 8 |
hierarchical model | 8 |
gene pairs | 8 |
required metadata | 8 |
step ii | 8 |
neighborhood sequences | 8 |
microscope image | 8 |
absolute value | 8 |
disease maps | 8 |
com https | 8 |
se rv | 8 |
widely used | 8 |
seq pre | 8 |
coding genes | 8 |
positive rate | 8 |
artificial intelligence | 8 |
imaging flow | 8 |
refseq filter | 8 |
hpv genome | 8 |
rna ti | 8 |
relevant gene | 8 |
weighted edges | 8 |
rqvmzs df | 8 |
relevant genes | 8 |
true values | 8 |
samples using | 8 |
concomitant drug | 8 |
sampled sequences | 8 |
manifold approximation | 8 |
single administrations | 8 |
true positive | 8 |
using hierarchical | 8 |
biological variations | 8 |
models trained | 8 |
determined using | 8 |
log loss | 8 |
representation size | 8 |
short reads | 8 |
related work | 8 |
using different | 8 |
profile hmms | 8 |
cancer type | 8 |
biological function | 8 |
drug design | 8 |
tested whether | 8 |
raw nucleotide | 8 |
national cancer | 8 |
cycle genes | 8 |
one another | 8 |
residue numbering | 8 |
ad adrd | 8 |
numbering scheme | 8 |
gene lists | 8 |
repurposing screenings | 8 |
motif sequence | 8 |
vector machine | 8 |
drug targets | 8 |
three methods | 8 |
shortest path | 8 |
ad genes | 8 |
information presented | 8 |
human junction | 8 |
gene gene | 8 |
cell resolution | 8 |
immune cell | 8 |
population structure | 8 |
vanilla pca | 8 |
baseline methods | 8 |
sparc consortium | 8 |
sparc investigators | 8 |
least two | 7 |
functional enrichment | 7 |
reconstruction methods | 7 |
ann arbor | 7 |
window lists | 7 |
formal analysis | 7 |
rqvmzs pf | 7 |
srcdb pdb | 7 |
expressions among | 7 |
cell subpopulations | 7 |
differential gene | 7 |
ncbi sra | 7 |
classification performances | 7 |
kjin ujyyq | 7 |
selected based | 7 |
clinical scores | 7 |
core team | 7 |
expression counts | 7 |
gut microbiota | 7 |
human tissues | 7 |
drug safety | 7 |
rqvmzs ji | 7 |
license cc | 7 |
gsea bar | 7 |
panel ii | 7 |
tcb http | 7 |
gene annotation | 7 |
original draft | 7 |
cervical cancer | 7 |
interstitial lung | 7 |
van rooij | 7 |
rqvmzs ug | 7 |
set heuristics | 7 |
gene symbol | 7 |
ravlt learning | 7 |
personalized medicine | 7 |
family dissimilarity | 7 |
reference variation | 7 |
liquid biopsy | 7 |
ydma http | 7 |
org seurat | 7 |
niagads alzheimer | 7 |
transcript counts | 7 |
xist regulator | 7 |
high turnover | 7 |
sequencing studies | 7 |
annotated cell | 7 |
gene targets | 7 |
response variable | 7 |
unique rows | 7 |
used two | 7 |
rqvmzs bd | 7 |
matrix ws | 7 |
bayesian inference | 7 |
semantic predicates | 7 |
curation process | 7 |
recall curve | 7 |
ueke http | 7 |
transcript level | 7 |
type annotation | 7 |
proposed methods | 7 |
umi resolution | 7 |
previously proposed | 7 |
end positions | 7 |
posterior moments | 7 |
high quality | 7 |
proc natl | 7 |
gradient descent | 7 |
using normative | 7 |
related pathways | 7 |
missing data | 7 |
target interaction | 7 |
multiple mapped | 7 |
rahul satija | 7 |
sliding windows | 7 |
structure prediction | 7 |
taxonomic groups | 7 |
pcc value | 7 |
vice versa | 7 |
cancer diagnosis | 7 |
two versions | 7 |
differential splicing | 7 |
previous studies | 7 |
immune system | 7 |
cortical regions | 7 |
hard motif | 7 |
different combinations | 7 |
mqr http | 7 |
tissue type | 7 |
regulator hgnc | 7 |
eddy sr | 7 |
pediatric gbm | 7 |
log fcs | 7 |
much higher | 7 |
yv http | 7 |
will help | 7 |
mutation rates | 7 |
single path | 7 |
islet cells | 7 |
described previously | 7 |
yarza set | 7 |
alternative splicing | 7 |
bar full | 7 |
standalone program | 7 |
variable genes | 7 |
rqvmzs tqet | 7 |
nat genet | 7 |
input file | 7 |
extra trees | 7 |
kinase domain | 7 |
fungal ssu | 7 |
suffix array | 7 |
cell journal | 7 |
vql query | 7 |
nucleotide variants | 7 |
prediction performance | 7 |
every window | 7 |
glz http | 7 |
cell linage | 7 |
harmonization techniques | 7 |
different models | 7 |
short article | 7 |
perfect minimizer | 7 |
rowdiff paths | 7 |
computational approaches | 7 |
data standards | 7 |
data visualization | 7 |
using rna | 7 |
position representation | 7 |
expression patterns | 7 |
radboud university | 7 |
across multiple | 7 |
statistical association | 7 |
ftx transcript | 7 |
death rate | 7 |
certified bythis | 7 |
van loo | 7 |
rqvmzs glz | 7 |
cell epigenomic | 7 |
trajectory inference | 7 |
three fields | 7 |
binary matrix | 7 |
life sciences | 7 |
clin pharmacol | 7 |
copy state | 7 |
caravagna et | 7 |
human mouse | 7 |
umap space | 7 |
rna fragment | 7 |
cognitive impairment | 7 |
related information | 7 |
common form | 7 |
ap gd | 7 |
rna sequence | 7 |
data pre | 7 |
gains detected | 7 |
acad sci | 7 |
mutational burden | 7 |
cells using | 7 |
existing tools | 7 |
research center | 7 |
drug development | 7 |
network analysis | 7 |
functional characterization | 7 |
avi srivastava | 7 |
table shows | 7 |
healthy individuals | 7 |
may also | 7 |
rqvmzs ncpj | 7 |
phe side | 7 |
gbm sample | 7 |
conformational labels | 7 |
associated ild | 7 |
large scale | 7 |
motif phosphorylation | 7 |
reviews genetics | 7 |
rqvmzs er | 7 |
distance metric | 7 |
negative genes | 7 |
complete results | 7 |
structure files | 7 |
rqvmzs mqr | 7 |
accession numbers | 7 |
coordinate files | 7 |
oryza sativa | 7 |
unit variance | 7 |
data center | 7 |
fjzp http | 7 |
vg toolkit | 7 |
data portal | 7 |
rqvmzs cimd | 7 |
real hi | 7 |
allowed us | 7 |
expected number | 7 |
liu et | 7 |
posterior distribution | 7 |
bythis version | 7 |
rqvmzs ydma | 7 |
second stage | 7 |
models using | 7 |
sequenced cancer | 7 |
noise level | 7 |
cimd http | 7 |
rrna mitochondria | 7 |
median js | 7 |
fasta file | 7 |
using deep | 7 |
negative samples | 7 |
gray matter | 7 |
health research | 7 |
root mean | 7 |
active state | 7 |
age range | 7 |
log fold | 7 |
ncpj http | 7 |
reference databases | 7 |
first principal | 7 |
month year | 7 |
random forests | 7 |
communication networks | 7 |
polya sites | 7 |
umap visualisation | 7 |
computation time | 7 |
scatac datasets | 7 |
functional impact | 7 |
file containing | 7 |
article title | 7 |
empirical data | 7 |
internationalpeer review | 7 |
coexpression network | 7 |
susin et | 7 |
expression table | 7 |
zheng dataset | 7 |
false negatives | 7 |
segregant analysis | 7 |
wheeler transform | 7 |
second step | 7 |
tyrosine phosphatase | 7 |
sample cgy | 7 |
chqb https | 7 |
simple bayesian | 7 |
different samples | 7 |
site variation | 7 |
two cell | 7 |
squared test | 7 |
nat commun | 7 |
coli genomes | 7 |
rrna mito | 7 |
seq files | 7 |
life cycle | 7 |
protein structure | 7 |
exposure phenotypes | 7 |
plasma cells | 7 |
neighbourhood graphs | 7 |
ncrna fragment | 7 |
genome analysis | 7 |
data collection | 7 |
chinese academy | 7 |
hot encoding | 7 |
bone marrow | 7 |
vp marv | 7 |
ribosomal genes | 7 |
expected hitting | 7 |
functional annotations | 7 |
three cell | 7 |
true positives | 7 |
blastn database | 7 |
fungal lsu | 7 |
cts sizes | 7 |
dihedral label | 7 |
energy saver | 7 |
hub genes | 7 |
rk ts | 7 |
cancer gene | 7 |
motif scores | 7 |
arabidopsis thaliana | 7 |
cell analysis | 7 |
input parameters | 7 |
normalized mutual | 7 |
mwfz http | 7 |
whole genomes | 7 |
fitting procedure | 7 |
tqet http | 7 |
idf vectorizer | 7 |
chqb http | 7 |
genome assemblies | 7 |
cdsll https | 7 |
supplemental material | 7 |
embedding space | 7 |
cell omics | 7 |
second layer | 7 |
test whether | 7 |
zero values | 7 |
large subunit | 7 |
count matrices | 7 |
dynamical relationships | 7 |
rqvmzs rl | 7 |
associated variants | 7 |
lung disease | 7 |
human lung | 7 |
wpg http | 7 |
among different | 7 |
per site | 7 |
nucleotide polymorphisms | 7 |
browse page | 7 |
cell rep | 7 |
using linear | 7 |
pdb prop | 7 |
specific manner | 7 |
ense ftx | 7 |
zakeri et | 7 |
genome structure | 7 |
crispr spacers | 7 |
org abide | 7 |
high degree | 7 |
genetic algorithm | 6 |
genetic data | 6 |
web applications | 6 |
fungal refseq | 6 |
three ad | 6 |
nonnegative matrix | 6 |
ew ix | 6 |
positional signal | 6 |
like small | 6 |
lu et | 6 |
cell related | 6 |
ambiguous nucleotides | 6 |
johnson et | 6 |
pfi stad | 6 |
posterior probability | 6 |
level de | 6 |
expected proportion | 6 |
mean standardized | 6 |
screening experiments | 6 |
bioinformatics bty | 6 |
database issue | 6 |
vector machines | 6 |
cancer analysis | 6 |
trna synthetase | 6 |
dependent genes | 6 |
bits per | 6 |
transfer learning | 6 |
features associated | 6 |
using either | 6 |
clinical dementia | 6 |
embedding layer | 6 |
zohm http | 6 |
fragments excised | 6 |
kinase genes | 6 |
two classes | 6 |
exome sequencing | 6 |
biotechnology information | 6 |
data available | 6 |
transcript lncrna | 6 |
make use | 6 |
related gene | 6 |
cell trajectories | 6 |
will also | 6 |
call cnvs | 6 |
colorblind readers | 6 |
enrichment test | 6 |
linage tree | 6 |
rare variants | 6 |
high accuracy | 6 |
novel computational | 6 |
usage bias | 6 |
nitrogen usage | 6 |
prior distribution | 6 |
biologically relevant | 6 |
new cells | 6 |
marker genes | 6 |
overall accuracy | 6 |
query time | 6 |
interaction frequency | 6 |
will fail | 6 |
generation systems | 6 |
vecscreen plus | 6 |
predictive distribution | 6 |
mapping score | 6 |
parental lines | 6 |
mackay et | 6 |
second best | 6 |
yagn http | 6 |
one edge | 6 |
sample correlation | 6 |
research questions | 6 |
alexmascension triku | 6 |
concomitant drugs | 6 |
dihedral labels | 6 |
range predicted | 6 |
mean rank | 6 |
various adrs | 6 |
state university | 6 |
classification performance | 6 |
results indicated | 6 |
fgfr fgfr | 6 |
group dissimilarity | 6 |
plger diffutr | 6 |
deep generative | 6 |
mayo clinic | 6 |
also allows | 6 |
nk cells | 6 |
bulked segregant | 6 |
van dijk | 6 |
using empirical | 6 |
nawrocki ep | 6 |
sequencing reads | 6 |
molecular plant | 6 |
target binding | 6 |
gwas model | 6 |
kjin pwvxf | 6 |
data sources | 6 |
td vb | 6 |
mass cytometry | 6 |
cxxa http | 6 |
read coverage | 6 |
average case | 6 |
previous layers | 6 |
synthetic dataset | 6 |
molecular profiling | 6 |
selected bases | 6 |
particle two | 6 |
estrogen receptor | 6 |
scripts code | 6 |
missing values | 6 |
vqgd http | 6 |
com oluwadarelab | 6 |
test data | 6 |
translational medicine | 6 |
reduction factor | 6 |
ptn ip | 6 |
first row | 6 |
death process | 6 |
tissue expression | 6 |
coli cg | 6 |
intergenic regions | 6 |
scientific publications | 6 |
transcript annotation | 6 |
hard motifs | 6 |
efficient minimizers | 6 |
reference scrna | 6 |
ding datasets | 6 |
hs achieved | 6 |
kjin tegbs | 6 |
predicted ad | 6 |
loss functions | 6 |
motif grammar | 6 |
database using | 6 |
removal tools | 6 |
nar gky | 6 |
types across | 6 |
profiling dataset | 6 |
low expression | 6 |
learning approaches | 6 |
oluwadarelab particlechromo | 6 |
hotspot mutations | 6 |
internal ti | 6 |
strain level | 6 |
selected small | 6 |
cs achieved | 6 |
evaluation based | 6 |
mer set | 6 |
der waals | 6 |
metabolizing enzymes | 6 |
cpu hours | 6 |
cell turnover | 6 |
multinomial distribution | 6 |
center position | 6 |
kjin fde | 6 |
jaspar database | 6 |
computational resources | 6 |
tsne tsne | 6 |
usage analysis | 6 |
significantly better | 6 |
directed graph | 6 |
kb gm | 6 |
random sampling | 6 |
cancer dataset | 6 |
standard error | 6 |
computational methods | 6 |
ensemble model | 6 |
genlisea aurea | 6 |
uxwc http | 6 |
also available | 6 |
less likely | 6 |
ip rk | 6 |
best practices | 6 |
rna gene | 6 |
local splicing | 6 |
given gene | 6 |
cdr scores | 6 |
hyperparameter tuning | 6 |
various types | 6 |
spectral clustering | 6 |
rev genet | 6 |
transcriptional regulation | 6 |
feasible solutions | 6 |
genomic position | 6 |
complete genomes | 6 |
diffutr paper | 6 |
based consensus | 6 |
read alignment | 6 |
design decisions | 6 |
ieee international | 6 |
synonymous motif | 6 |
justin sybrandt | 6 |
autism spectrum | 6 |
mapping vector | 6 |
zero expression | 6 |
cluster graph | 6 |
hirak sarkar | 6 |
th percentile | 6 |
yuen et | 6 |
approximately half | 6 |
markov model | 6 |
umap embedding | 6 |
rqvmzs sxxl | 6 |
shared mirnas | 6 |
rrna database | 6 |
figure legend | 6 |
biological systems | 6 |
specified species | 6 |
three clustering | 6 |
relative nitrogen | 6 |
date month | 6 |
learning research | 6 |
transcript expression | 6 |
worth noting | 6 |
specific language | 6 |
different gene | 6 |
binding proteins | 6 |
dataset structure | 6 |
rqvmzs zohm | 6 |
ty fa | 6 |
motif discovery | 6 |
report page | 6 |
previously developed | 6 |
analysis pipeline | 6 |
constructed using | 6 |
vast majority | 6 |
comparative study | 6 |
make predictions | 6 |
performs better | 6 |
class cancer | 6 |
assembly data | 6 |
bacterial genomes | 6 |
knowledge discovery | 6 |
acid sequence | 6 |
simulated experiment | 6 |
passed ribotyper | 6 |
bfimpute scimpute | 6 |
prohibitively slow | 6 |
human genetics | 6 |
type error | 6 |
low density | 6 |
cell genomics | 6 |
small cohorts | 6 |
total runtime | 6 |
binomial mixture | 6 |
genomic regions | 6 |
omic data | 6 |
lightweight single | 6 |
likelihood function | 6 |
nanopore sequencing | 6 |
reference transcriptomes | 6 |
percent identity | 6 |
also show | 6 |
different genes | 6 |
full connection | 6 |
novel transcript | 6 |
across subjects | 6 |
ad swapping | 6 |
data quality | 6 |
gwas catalog | 6 |
abstract background | 6 |
genomic evidence | 6 |
terminal state | 6 |
cid cid | 6 |
nearest neighbor | 6 |
true negatives | 6 |
research data | 6 |
datasets used | 6 |
software packages | 6 |
quantified values | 6 |
bioinformatic tools | 6 |
ontology terms | 6 |
com plger | 6 |
mutant types | 6 |
protein tyrosine | 6 |
type identification | 6 |
accurate prediction | 6 |
thyroid hormone | 6 |
tumor suppressor | 6 |
vm achieved | 6 |
neoplastic cells | 6 |
china national | 6 |
covariance matrix | 6 |
human breast | 6 |
given cell | 6 |
mutated position | 6 |
kjin kb | 6 |
accessed feb | 6 |
input hi | 6 |
metadata fields | 6 |
two distinct | 6 |
produced using | 6 |
kinase inhibitors | 6 |
gaussian mixture | 6 |
biology papers | 6 |
biological networks | 6 |
coding sequences | 6 |
genbank error | 6 |
average number | 6 |
functional roles | 6 |
highly correlated | 6 |
polya site | 6 |
values achieved | 6 |
new targeted | 6 |
unexpressed isoforms | 6 |
gene prediction | 6 |
calculated metrics | 6 |
latent representation | 6 |
biological datasets | 6 |
across human | 6 |
will refer | 6 |
protein coding | 6 |
tumor samples | 6 |
baseline settings | 6 |
pancreatic cancer | 6 |
precision recall | 6 |
contain information | 6 |
gse brain | 6 |
de genes | 6 |
see also | 6 |
mutation census | 6 |
plastid filter | 6 |
wide expression | 6 |
decile enrichment | 6 |
cell clusters | 6 |
amii achieved | 6 |
dcnn structure | 6 |
aryl hydrocarbon | 6 |
likely associated | 6 |
different conditions | 6 |
new moment | 6 |
analysis showed | 6 |
bioconductor package | 6 |
predictive power | 6 |
sxxl http | 6 |
squared error | 6 |
recovering gene | 6 |
data abstraction | 6 |
sequences using | 6 |
correctly identified | 6 |
rna sequences | 6 |
characteristic curve | 6 |
end joining | 6 |
chapel hill | 6 |
whose expression | 6 |
alzheimers dis | 6 |
jaspar motif | 6 |
diverse scrna | 6 |
semantic types | 6 |
source group | 6 |
circulating tumor | 6 |
chemical fingerprints | 6 |
transcriptional profiling | 6 |
variant allele | 6 |
novel method | 6 |
types based | 6 |
magnetic resonance | 6 |
ieee transactions | 6 |
cts solutions | 6 |
modal imaging | 6 |
significantly different | 6 |
university medical | 6 |
small subunit | 6 |
threshold value | 6 |
per chromosome | 6 |
random variables | 6 |
seq expression | 6 |
standardized log | 6 |
signaling pathway | 6 |
modeling approach | 6 |
domain specific | 6 |
relatively low | 6 |
axis represents | 6 |
sequence read | 6 |
inference speed | 6 |
top genes | 6 |
sequence reads | 6 |
binding site | 6 |
sequencing datasets | 6 |
database table | 6 |
transcript sequence | 6 |
small set | 6 |
ding et | 6 |
com alexmascension | 6 |
compute empirical | 6 |
seven different | 6 |
along branch | 6 |
short sequences | 6 |
conditional probability | 6 |
ravlt immediate | 6 |
fragment expressions | 6 |
systematic review | 6 |
also used | 6 |
ribovore documentation | 6 |
gaussian distributions | 6 |
colored de | 6 |
com shobistassen | 6 |
fms achieved | 6 |
benchmarking study | 6 |
mitochondrial ti | 6 |
probabilistic matrix | 6 |
repurposing candidates | 6 |
geometric mean | 6 |
biomedical engineering | 6 |
variational inference | 6 |
simulated reads | 6 |
across many | 6 |
cell atac | 6 |
hpv genomes | 6 |
chloroplast filter | 6 |
four ad | 6 |
observational studies | 6 |
created based | 6 |
mouse genome | 6 |
sequence compression | 6 |
selected lncrna | 6 |
predicted using | 6 |
adref adalt | 6 |
among datasets | 6 |
experimentally validated | 6 |
junction sites | 6 |
fa ct | 6 |
plus taxonomy | 6 |
structure produced | 6 |
graph embedding | 6 |
deep sequencing | 6 |
annotation size | 6 |
percentile plots | 6 |
drosophila melanogaster | 6 |
positive predictions | 6 |
plant cell | 6 |
differences among | 6 |
linear combination | 6 |
continuous exposures | 6 |
neck squamous | 6 |
data across | 6 |
cell heterogeneity | 6 |
structural variants | 6 |
represents one | 6 |
previously published | 6 |
alternative polyadenylation | 6 |
web interface | 6 |
multiple datasets | 6 |
impute dropout | 6 |
small non | 6 |
snp rs | 6 |
two ways | 6 |
pancreatic beta | 6 |
changepoint analysis | 6 |
side chain | 6 |
deep convolutional | 6 |
tmou http | 6 |
multiple lines | 6 |
gapdh hpv | 6 |
rqvmzs yagn | 6 |
introduction methods | 6 |
end reads | 6 |
absent strains | 6 |
shobistassen via | 6 |
gene numbers | 6 |
art methods | 6 |
two genes | 6 |
normal samples | 6 |
continuous relaxation | 6 |
dna repair | 6 |
viral protein | 5 |
using simulated | 5 |
computational cost | 5 |
vg http | 5 |
clustering method | 5 |
also tested | 5 |
image acquisition | 5 |
top predicted | 5 |
two synonymous | 5 |
many genes | 5 |
dihedral angles | 5 |
given transcript | 5 |
utr analysis | 5 |
key features | 5 |
bioinformatic analysis | 5 |
similar pattern | 5 |
ebi gwas | 5 |
se santai | 5 |
profiling experiments | 5 |
mitochondrial genes | 5 |
ovhrz http | 5 |
hg system | 5 |
binding network | 5 |
unique mapped | 5 |
different research | 5 |
rowdiff successor | 5 |
transcriptional cis | 5 |
also includes | 5 |
connection layer | 5 |
small molecule | 5 |
motif regions | 5 |
number alteration | 5 |
multiple samples | 5 |
bl change | 5 |
mutation multiplicity | 5 |
rrna genes | 5 |
main steps | 5 |
ma datasets | 5 |
adenocarcinoma transcript | 5 |
ild involving | 5 |
hypothesis testing | 5 |
evaluation metric | 5 |
binding affinity | 5 |
perfect minimizers | 5 |
best result | 5 |
mock dataset | 5 |
bp terms | 5 |
smartreference dt | 5 |
current address | 5 |
analysis pipelines | 5 |
contingency table | 5 |
protein expression | 5 |
cell carcinomas | 5 |
deu methods | 5 |
significantly enriched | 5 |
clean dataset | 5 |
hom lowsimilarity | 5 |
quality standards | 5 |
parameters estimation | 5 |
results indicate | 5 |
subsequently used | 5 |
synthetic data | 5 |
linear version | 5 |
overlapping genes | 5 |
minimum number | 5 |
per kinase | 5 |
bayesian factorization | 5 |
see details | 5 |
go enrichment | 5 |
hypothetical scenarios | 5 |
mouse organogenesis | 5 |
two conditions | 5 |
binding sites | 5 |
sequencing experiments | 5 |
state examination | 5 |
local alignment | 5 |
example images | 5 |
computational molecular | 5 |
reports provide | 5 |
salt bridge | 5 |
suppressor genes | 5 |
south african | 5 |
relationships across | 5 |
mle approach | 5 |
activation function | 5 |
scale data | 5 |
cell count | 5 |
connected layers | 5 |
mol biol | 5 |
dcgerard ldfast | 5 |
js distances | 5 |
sra database | 5 |
zgbvl http | 5 |
saliency map | 5 |
acid substitutions | 5 |
trained using | 5 |
anchor vertex | 5 |
prior knowledge | 5 |
carpenter et | 5 |
coexpressed gene | 5 |
prediction tools | 5 |
read proportioning | 5 |
forest classifier | 5 |
population genetics | 5 |
information theory | 5 |
cell identity | 5 |
integer linear | 5 |
cell multi | 5 |
specific expression | 5 |
good performance | 5 |
multiplicative site | 5 |
mild cognitive | 5 |
njd http | 5 |
gene reports | 5 |
data management | 5 |
ld coefficient | 5 |
distinct clusters | 5 |
producing cells | 5 |
first decile | 5 |
recently developed | 5 |
molecular interaction | 5 |
martino et | 5 |
solutions obtained | 5 |
genotype uncertainty | 5 |
modifying drugs | 5 |
genes detected | 5 |
evidence suggests | 5 |
reference dataset | 5 |
wgs data | 5 |
two models | 5 |
five imputation | 5 |
ldsep https | 5 |
consensus assembly | 5 |
ethnic study | 5 |
table provides | 5 |
comparative analysis | 5 |
expected abundances | 5 |
context window | 5 |
programming language | 5 |
cell systems | 5 |
mutations present | 5 |
rqvmzs lh | 5 |
cell cnv | 5 |
ref allele | 5 |
stage stad | 5 |
gene interaction | 5 |
information gain | 5 |
human chromosome | 5 |
biological data | 5 |
rrna chloroplast | 5 |
open science | 5 |
lncrna expression | 5 |
lncrna exons | 5 |
dendritic cells | 5 |
memory requirements | 5 |
new tools | 5 |
learning algorithm | 5 |
spatial group | 5 |
taxonomy tree | 5 |
temporal dynamics | 5 |
constant time | 5 |
roc auc | 5 |
mereu et | 5 |
two groups | 5 |
graph annotations | 5 |
individual gene | 5 |
difficult task | 5 |
task force | 5 |
sensitivity specificity | 5 |
cancer biomarkers | 5 |
highest expressed | 5 |
associated lung | 5 |
trna sequences | 5 |
empirical null | 5 |
optimal target | 5 |
clinical phenotypes | 5 |
amyloid treatments | 5 |
values across | 5 |
research question | 5 |
bioinformatics btaa | 5 |
training dataset | 5 |
image analysis | 5 |
computational background | 5 |
disjoint subsets | 5 |
american statistical | 5 |
stage read | 5 |
distinguish cell | 5 |
jngul http | 5 |
different levels | 5 |
data preprocessing | 5 |
generate simulated | 5 |
different approaches | 5 |
passenger neighborhoods | 5 |
every cell | 5 |
six hippocampus | 5 |
computational tool | 5 |
traversal stops | 5 |
type material | 5 |
extracted features | 5 |
false detections | 5 |
north carolina | 5 |
realistic simulated | 5 |
encoding cell | 5 |
different platforms | 5 |
correlation distance | 5 |
kb duplication | 5 |
relative positions | 5 |
binding motifs | 5 |
cell transcriptomes | 5 |
mb resolution | 5 |
predicate extraction | 5 |
sleep phenotypes | 5 |
information extraction | 5 |
idf scores | 5 |
embargo period | 5 |
mouse pancreatic | 5 |
nonlinear embedding | 5 |
de la | 5 |
related regulatory | 5 |
site per | 5 |
human preimplantation | 5 |
significant variants | 5 |
analysis via | 5 |
virtual screening | 5 |
cell institute | 5 |
review editing | 5 |
minimal information | 5 |
snp alleles | 5 |
communication network | 5 |
benchmarking data | 5 |
level quantification | 5 |
mean genotypes | 5 |
digital transcriptional | 5 |
based features | 5 |
analysis notebooks | 5 |
ense ankrd | 5 |
created using | 5 |
integrated network | 5 |
pearson correlations | 5 |
pathway enrichment | 5 |
potential regulatory | 5 |
lncrna expressions | 5 |
data onto | 5 |
model accuracy | 5 |
expression profile | 5 |
genomics datasets | 5 |
stage coad | 5 |
required fields | 5 |
foreground distribution | 5 |
pseudotime computation | 5 |
kinase domains | 5 |
individual datasets | 5 |
time consuming | 5 |
manually curated | 5 |
gibbs sampling | 5 |
vaf distribution | 5 |
unique inhibitors | 5 |
two datasets | 5 |
value distribution | 5 |
kelley et | 5 |
hi li | 5 |
different motifs | 5 |
btz http | 5 |
negative values | 5 |
first one | 5 |
multiple genomes | 5 |
cognitive decline | 5 |
data bank | 5 |
phosphorylation sites | 5 |
highly significant | 5 |
output file | 5 |
gene name | 5 |
simple linear | 5 |
stage skcm | 5 |
genes encoding | 5 |
variable coverage | 5 |
lahens nf | 5 |
pseudo targeted | 5 |
set sizes | 5 |
real scrna | 5 |
gut microbiome | 5 |
submitted genome | 5 |
projection matrix | 5 |
genome fusion | 5 |
acr aal | 5 |
smartreference jbvdrwuod | 5 |
motif grammars | 5 |
maccs keys | 5 |
ldfast sims | 5 |
better understanding | 5 |
distinct cell | 5 |
level analyses | 5 |
di martino | 5 |
gene clustering | 5 |
different single | 5 |
sample purity | 5 |
lh http | 5 |
least squares | 5 |
outstanding performance | 5 |
complex dataset | 5 |
different functional | 5 |
seq experiments | 5 |
genes associated | 5 |
median values | 5 |
cellular trajectories | 5 |
original protvec | 5 |
threshold levels | 5 |
risk factors | 5 |
expression ratio | 5 |
various gene | 5 |
expressions data | 5 |
uses less | 5 |
reference strains | 5 |
go term | 5 |
four gene | 5 |
expressions across | 5 |
active development | 5 |
positive detections | 5 |
via consistently | 5 |
explained variance | 5 |
rrna databases | 5 |
computational expertise | 5 |
synonymous latent | 5 |
operating characteristic | 5 |
accessible chromatin | 5 |
small cohort | 5 |
cold spring | 5 |
cell latent | 5 |
disordered breathing | 5 |
brain barrier | 5 |
significantly correlated | 5 |
wen et | 5 |
special case | 5 |
sncrna fragment | 5 |
classification problems | 5 |
user provides | 5 |
experiments using | 5 |
code used | 5 |
pseudotime analysis | 5 |
tumour cells | 5 |
ccf values | 5 |
language processing | 5 |
genome function | 5 |
biological replicates | 5 |
gwas analysis | 5 |
multiple myeloma | 5 |
method based | 5 |
bam uk | 5 |
also identified | 5 |
human gut | 5 |
human pbmcs | 5 |
long noncoding | 5 |
publically available | 5 |
recent years | 5 |
submission checking | 5 |
noise ratio | 5 |
log transformation | 5 |
recurrent neural | 5 |
data obtained | 5 |
number variation | 5 |
scatter plots | 5 |
decoupling algorithm | 5 |
external resources | 5 |
results also | 5 |
coupled receptor | 5 |
seven methods | 5 |
best et | 5 |
method outperforms | 5 |
cell labels | 5 |
multiple times | 5 |
spectrum disorder | 5 |
approach using | 5 |
pfi skcm | 5 |
bmc syst | 5 |
ksjuz http | 5 |
cluster patterns | 5 |
values using | 5 |
current signals | 5 |
sncrna fragments | 5 |
supplemental information | 5 |
funding acquisition | 5 |
utr bins | 5 |
losses detected | 5 |
lowering interventions | 5 |
molecular subtypes | 5 |
linear time | 5 |
coordinated degs | 5 |
rowdiff path | 5 |
intrinsically disordered | 5 |
pfi esca | 5 |
data will | 5 |