bigram

This is a table of type bigram and their frequencies. Use it to search & browse the list to learn more about your study carrel.

bigram	frequency
et al	1443
biorxiv preprint	1028
posted february	1027
copyright holder	1027
version posted	1027
author funder	1027
peer review	1021
preprint https	981
org licenses	871
granted biorxiv	860
preprintthis version	818
org google	675
international licenseavailable	651
hsltkm https	571
made available	289
gene expression	204
seq data	194
international licenseperpetuity	137
thisthis version	137
cell rna	131
vtwe pe	129
io view	129
view corchea	128
pe https	127
associated genes	126
nucleic acids	111
cell types	107
sequencing data	106
ssu rrna	96
data set	95
allowed without	93
reuse allowed	93
rights reserved	93
without permission	93
data sets	92
polar set	92
com document	90
edit smartreference	89
ofupuwd jhxsou	89
jhxsou edit	89
ue ofupuwd	89
acids res	88
ranked genes	86
breast cancer	85
tumor cells	84
polar sets	84
cell type	80
machine learning	79
also made	74
cc license	74
government work	74
us government	74
gene set	71
deep learning	70
supplementary fig	66
wasthis version	65
international licenseunder	65
quality control	64
differential expression	60
fs methods	59
expression data	58
simulated data	57
site effects	56
training set	56
genome sequences	55
data analysis	55
gene selection	54
test set	54
seq datasets	52
link energy	52
supplementary table	52
gene sets	51
genome biology	51
rna sequencing	51
genome sequencing	51
cell data	51
targeted gene	50
rrna sequences	50
gene profiling	49
rrna sensor	49
whole genome	48
supplementary materials	47
drug repurposing	47
cancer cells	46
supplementary figure	45
lsu rrna	45
seq dataset	44
single cell	44
hierarchical bayesian	44
weight matrix	44
amino acid	43
cancer mutations	42
universal hitting	42
turnover rate	42
summary statistics	42
driver mutations	41
reference genome	40
fully automated	40
mutation rate	40
de bruijn	40
swarm size	40
least one	39
resolution whole	39
latent space	39
wide association	39
informative genes	39
genes selected	39
cortical thickness	38
linear model	38
glm egs	38
integration sites	37
ribosomal rna	37
preprint arxiv	37
automated approach	37
small rna	37
arxiv preprint	37
expression analysis	36
target set	36
read counts	36
total number	35
real data	35
cancer cell	35
househam et	35
sample size	35
data using	35
dropout events	34
reference sequence	34
linear regression	33
dimensionality reduction	33
layered polar	33
specific minimizers	32
differentially expressed	32
yes yes	32
axis denotes	32
normative models	32
international conference	32
hitting set	32
tet profile	32
bi tio	32
hi bi	32
go terms	32
preprint http	31
copy number	31
activation value	31
hitting sets	31
nitrogen content	31
neural networks	31
variation graph	31
protein kinase	30
bmc bioinformatics	30
annotation matrix	30
throughput sequencing	29
passenger mutations	29
loss function	29
lower bound	29
see supplementary	29
ssnp totalsnp	29
dimensional space	29
cancer data	29
computer science	28
gene ontology	28
acids research	28
see methods	28
error rate	28
hpv integration	28
ensg ense	28
feature selection	28
cell biology	28
matrix factorization	27
disease progression	27
tangherloni et	27
selected genes	27
plos one	27
competing interests	27
single cells	26
cancer genome	26
realistic data	26
randomly selected	26
based methods	26
raw data	26
based approach	26
human genome	26
predicted genes	26
compositional data	26
seq hom	26
optimal solutions	26
nature methods	26
sparc data	26
de analysis	25
computational biology	25
publicly available	25
full length	25
refined bert	25
synonymous motifs	25
reliability ratios	25
chromatin accessibility	25
best ae	25
neural network	25
en ge	24
false positive	24
seq analysis	24
window size	24
remdesivir drc	24
data structure	24
imputation methods	24
ig en	24
local confidence	24
genome biol	24
ge ne	24
downstream analysis	24
turnover rates	24
mapped reads	24
running time	24
generalized linear	23
scale bars	23
parental genome	23
cancer types	23
genes based	23
global confidence	23
peak memory	23
tested dimension	23
type ii	23
precision medicine	23
amyloid lowering	23
linear models	23
curation team	22
informative gene	22
random minimizer	22
expression matrix	22
chr chr	22
cell communication	22
drug discovery	22
upper bound	22
best results	22
isoform quantification	22
selection methods	22
principal component	21
learning models	21
nature reviews	21
target genes	21
data curation	21
pik ca	21
specific density	21
two different	21
cell surface	21
null distribution	21
large number	21
across different	21
fs method	21
bulk data	21
pearson correlation	21
figure shows	21
pca followed	21
false discovery	21
association studies	21
associated adrs	20
benchmarking datasets	20
different types	20
gwas summary	20
small number	20
new data	20
cna segments	20
normative modeling	20
random sequence	20
latent variables	20
sliding window	20
commonly used	20
methylation detection	20
escherichia coli	20
svm model	20
sample sizes	20
window sizes	20
standard deviation	20
enrichment analysis	20
com eqnedit	20
neuroimaging data	20
bruijn graph	20
drug interactions	19
structural variant	19
based figures	19
nucleotide sequences	19
mean ari	19
genome assembly	19
microscope images	19
relative abundances	19
downstream analyses	19
cell fates	19
random forest	19
nat methods	19
gene modules	19
amino acids	19
national academy	19
count matrix	19
excel file	19
van der	19
structure reconstruction	19
sequencing errors	19
molecular biology	18
different cell	18
confidence values	18
transcription factor	18
linkage disequilibrium	18
kinase family	18
allele frequency	18
imaging data	18
receptive field	18
different strategies	18
drug pair	18
existing methods	18
colored path	18
see section	18
results show	18
activation values	18
phase separation	18
training data	18
nature communications	18
org https	18
ground truth	18
nanopore methylation	18
significant structural	18
relative position	18
secondary structure	17
tumor growth	17
cell lines	17
case study	17
molecular docking	17
classification models	17
glucose metabolism	17
stem cell	17
gene level	17
drug pairs	17
profiling data	17
terminal states	17
fortin et	17
driver genes	17
input data	17
cell death	17
tet profiles	17
dimensional representation	17
specific genes	17
cell populations	17
false positives	17
statistical analysis	17
obtained using	17
library sizes	17
edge weights	17
intervention time	17
cell division	17
adult gbm	17
generation sequencing	17
transcriptional regulatory	17
wide range	17
scale information	17
cell cycle	17
active site	17
inhibitor non	17
cg sssi	16
gene networks	16
results obtained	16
genome atlas	16
discovery rate	16
hypothesis generation	16
raloxifene log	16
kia et	16
new york	16
clinical trials	16
subject studies	16
egs method	16
nat biotechnol	16
gene expressions	16
targeted capture	16
variant method	16
bert model	16
cancer genomes	16
genome sequence	16
cell library	16
stem cells	16
utr usage	16
embryonic stem	16
read mapping	16
data science	16
statistics datasets	16
national institutes	16
cell gene	16
epithelial cells	16
cohort sizes	16
statistic value	16
predicted values	16
basis selection	16
abide data	16
calculated using	16
different datasets	16
rand index	16
tumor types	16
expression levels	16
human papillomavirus	16
mixture model	16
kinase families	16
biological processes	16
gaussian process	15
expression level	15
convolutional layer	15
nearest neighbors	15
evaluation metrics	15
jaccard index	15
zhang et	15
component analysis	15
supplementary material	15
feature extraction	15
sparse log	15
genome browser	15
ra te	15
reference genomes	15
functional genomics	15
residual permutation	15
siamese network	15
particle swarm	15
sequence similarity	15
gm cell	15
batch effects	15
support vector	15
memory usage	15
cell line	15
sequence alignment	15
specific gene	14
gmmmd followed	14
see fig	14
data structures	14
thickness measures	14
adjusted rand	14
blastn databases	14
significantly higher	14
correlation coefficient	14
somatic mutations	14
consensus sequence	14
rrna sequence	14
association study	14
modified combat	14
mutual information	14
bruijn graphs	14
bases away	14
learning sparse	14
input sequence	14
label prediction	14
scale bar	14
kernel density	14
chemical structures	14
random walk	14
authors declare	14
totalsnp ratio	14
negative binomial	14
swarm optimization	14
brain imaging	14
original research	14
regulatory network	14
tumor microenvironment	14
standard errors	14
fastq files	14
united states	14
cohort target	14
coding rna	14
tcga breast	14
plant science	14
ligand type	14
fold change	14
interaction network	14
bayesian models	14
idealized data	14
validation experiments	14
refseq records	14
missense mutations	14
image data	14
sequencing depth	14
nature biotechnology	14
even though	14
integration events	14
manually annotated	13
functional prediction	13
patient set	13
siamese embedding	13
sample evaluation	13
drug combinations	13
hierarchical clustering	13
see figure	13
dcnn model	13
cancer mutation	13
brain cancer	13
protein sequence	13
random variable	13
hts data	13
related phenotypes	13
length isoform	13
structures generated	13
bert models	13
genetic subclones	13
statistic values	13
adversarial clustering	13
nature genetics	13
per cell	13
means clustering	13
mutation effect	13
general purpose	13
fixed interval	13
ovarian cancer	13
si ty	13
ari values	13
com dcgerard	13
objective function	13
genomic region	13
compiled ad	13
relative abundance	13
large datasets	13
protein interaction	13
functional annotation	13
metadata files	13
niagads genomicsdb	13
chromosome arm	13
systems biology	13
use case	13
data used	13
total link	13
squamous cell	13
density estimation	13
permit list	13
analysis using	13
silhouette coefficient	13
generated using	13
dna sequencing	13
comparison models	13
supplementary information	13
highly expressed	13
reference sequences	13
performed using	13
coding rnas	13
malekian et	13
cell migration	13
reliability ratio	13
monte carlo	13
protein sequences	13
high confidence	13
latent variable	13
protein kinases	13
set gs	13
parameter settings	13
human reference	13
type labels	13
multiple sequence	13
rna profile	13
cts size	13
immune response	13
uniform coverage	13
clustering explanation	13
data projection	12
mean expression	12
information processing	12
cell groups	12
simulation study	12
disease severity	12
null hypothesis	12
cancer res	12
kb resolution	12
counts distribution	12
fold cross	12
permutation approach	12
ccf computation	12
similar results	12
see table	12
highly similar	12
peak analysis	12
single nucleotide	12
rrna gene	12
basset model	12
american journal	12
peripheral blood	12
combinatorial optimization	12
wellcome trust	12
sci rep	12
original annotation	12
random minimizers	12
sequencing error	12
feature representation	12
feed forwad	12
convolutional neural	12
genbank indexers	12
genome data	12
color blindness	12
expression values	12
genomics data	12
effect size	12
different methods	12
clustering methods	12
software package	12
ncbi taxonomy	12
wide cna	12
sample set	12
sequence analysis	12
rqvmzs cxxa	12
user interface	12
quinn et	12
mimicking peptides	12
density factor	12
mononuclear cells	12
pbmc datasets	12
long non	12
tumor stage	12
zero counts	12
allows us	12
housekeeping genes	12
processing systems	12
transcript length	12
negative matrix	12
regulatory networks	12
expressed genes	12
deep neural	12
known ad	12
national center	12
ad values	12
scatac data	12
snp dataset	12
marburg virus	12
atp binding	12
learning model	12
genomic data	12
plant sciences	12
differential utr	12
mean value	12
trait associations	12
wolfers et	12
marquand et	12
data points	12
poisson loss	12
normative model	12
expressed isoforms	12
dna sequence	12
previous layer	12
back pocket	12
capture sequencing	12
first layer	12
higher scc	12
simulated dataset	12
genome res	12
effect sizes	12
supplementary figures	12
error rates	12
big data	12
cell transcriptomics	12
involving atorvastatin	12
interval sampling	12
neighbourhood graph	11
pooling layer	11
corresponding author	11
og en	11
motif sequences	11
individual cells	11
mutation taster	11
bert refined	11
cell level	11
learning algorithms	11
coding dna	11
reference data	11
gene number	11
cancer patients	11
cell differentiation	11
nat rev	11
blood mononuclear	11
mmdae followed	11
path length	11
computational time	11
time points	11
mutation data	11
kinase phylogenetic	11
itr og	11
combination therapy	11
totalsnp ratios	11
author contributions	11
lia na	11
genes proteins	11
cells killed	11
independent test	11
bert basic	11
hot encoded	11
full set	11
real datasets	11
biological process	11
drug metab	11
copy states	11
exact test	11
nitrogen atoms	11
supplementary section	11
cohort size	11
pinto et	11
true structure	11
cell sequencing	11
maximum likelihood	11
ur ea	11
figure legends	11
fold changes	11
input variables	11
de novo	11
expression profiles	11
expression across	11
clinical groups	11
repeated cross	11
accession number	11
posterior means	11
nb loss	11
physiology journal	11
cell hi	11
quinolone resistance	11
hitting time	11
cell fate	11
compression complexity	11
colorblind safe	11
posterior mean	11
gov pubmed	11
confidence interval	11
gene identification	11
hidden units	11
development team	11
per arm	11
much lower	11
time complexity	11
scientific community	11
intervention strategies	11
markov chain	11
many different	11
sequence data	11
rqvmzs ic	11
effect prediction	11
true counts	11
enriched go	11
amplified cells	11
figure panel	11
sparc dataset	11
ingroup analysis	11
first two	11
vcf files	11
data model	11
rna fragments	11
three different	11
ld estimates	11
clustering results	11
decoupled motifs	11
confidence coefficient	11
source code	11
phylogenetic group	11
te ns	11
neural information	11
scpnmf step	11
genome research	11
per million	11
js distance	11
somatic mutation	11
van den	11
energy surplus	11
three models	11
allele frequencies	11
research articles	11
cell lineage	11
preprint mailto	11
kinase structures	11
adverse drug	11
leiden algorithm	11
small molecules	11
cell interactions	11
conversion factor	11
chromosome conformation	11
gbm samples	11
cell divisions	11
ha lia	11
maximum activation	11
average expression	11
related genes	11
two types	11
sparc curation	11
log fc	10
carnivorous plant	10
profile hmm	10
based approaches	10
interaction networks	10
reduced features	10
antibiotic resistance	10
prr changes	10
optimization problem	10
cell transcriptomic	10
functional gene	10
different fs	10
bayesian model	10
pass fail	10
dna sequences	10
pooling size	10
transcriptome analysis	10
max activation	10
statistic method	10
biomedical research	10
stan development	10
supplemental figure	10
optimal cts	10
attention feed	10
surface receptors	10
two cohorts	10
three main	10
predicting ad	10
freely available	10
transcriptomic data	10
model inference	10
bulk rna	10
optimal polar	10
genetic variation	10
novel candidate	10
cancer institute	10
ix http	10
based feature	10
predictive accuracy	10
web server	10
empirical bayes	10
rna hgnc	10
two main	10
binding energy	10
fry pipeline	10
subunit ribosomal	10
drug reactions	10
bmc genomics	10
neck cancer	10
association analysis	10
positive genes	10
bulk genome	10
set bits	10
weight genes	10
natural language	10
raw dataset	10
cell transcriptome	10
pymol sessions	10
liquid phase	10
composite score	10
conformation capture	10
default parameters	10
frequency spectrum	10
variation graphs	10
national institute	10
statistical power	10
phosphorylation events	10
top right	10
methods section	10
ddis involving	10
lsu sequences	10
malignant cells	10
closely related	10
effect removal	10
bulk sequencing	10
associated gene	10
sparc datasets	10
images show	10
hong kong	10
teleporting random	10
supplementary note	10
additional information	10
expressed isoform	10
lung adenocarcinoma	10
reference standard	10
data repository	10
search results	10
normal cells	10
experimental data	10
nalidixic acid	10
human brain	10
bayesian framework	10
codon usage	10
biomarker identification	10
gene interactions	10
html https	10
high weight	10
graph representation	10
bayesian linear	10
graph construction	10
better performance	10
clinical outcomes	10
kirchoff et	10
dimensional embeddings	10
cell carcinoma	10
kernel size	10
based analysis	10
previous work	10
set problem	10
seq studies	10
tumour purity	10
prediction accuracy	10
rqvmzs wpg	10
first step	10
also provide	10
broad institute	10
cell growth	10
analysis results	10
isoform level	10
lecture notes	10
human embryonic	9
data files	9
experimental design	9
recently published	9
endothelial cells	9
genomic features	9
cell group	9
chain monte	9
quantification accuracy	9
feature map	9
data integration	9
highly variable	9
optimization algorithm	9
edge weight	9
dimension reduction	9
field size	9
derived rna	9
imputed data	9
zero mean	9
normal tissue	9
consensus sequences	9
rare diseases	9
exon count	9
seq expressions	9
file detailing	9
normal tissues	9
fail sequences	9
bacterial species	9
cancer research	9
combat model	9
candidate genes	9
sequence length	9
total energy	9
arm level	9
forwad attention	9
dimensional embedding	9
definition lines	9
repurposing screening	9
statistically significant	9
command line	9
knowledge graph	9
model performance	9
selection method	9
derived fragments	9
genetic evidence	9
fusion points	9
gene regulation	9
differentially weighted	9
dr af	9
best hit	9
web resource	9
mmdvae followed	9
region sample	9
open source	9
modeling site	9
associated mirnas	9
hidden layer	9
lowly expressed	9
lineage tree	9
electron microscope	9
data types	9
biofilm dispersal	9
colorectal cancer	9
count data	9
data processing	9
wilcoxon test	9
additional file	9
boxplot showing	9
subjects per	9
like compounds	9
plos comput	9
kjin cdsll	9
genes using	9
factor binding	9
artificial datasets	9
done using	9
across datasets	9
pic datasets	9
substrate multi	9
computed using	9
compatible minimizer	9
com pachterlab	9
niagads gwas	9
unexpected features	9
data submission	9
tumor sample	9
learning methods	9
snp indel	9
international journal	9
bioinformatics btz	9
identified using	9
performance measures	9
quantile empirical	9
pairwise log	9
simulated datasets	9
bustools pipeline	9
primary data	9
binding region	9
vcf file	9
ti methods	9
multiple testing	9
original paper	9
genetic variants	9
li et	9
causal genes	9
neighborhood features	9
convolutional layers	9
feature maps	9
human protein	9
input sequences	9
antisense rna	9
linked blocks	9
four different	9
mutually exclusive	9
average cortical	9
host gene	9
quinn erb	9
performance metrics	9
target gene	9
bases apart	9
real dataset	9
phylogenetic groups	9
computational approach	9
dataset contains	9
larger datasets	9
probability distributions	9
currently available	9
type prediction	9
query string	9
rqvmzs chqb	9
label label	9
rqvmzs vqgd	9
set enrichment	9
jaccard distance	9
clinical data	9
natl acad	9
data point	9
total snps	9
gene sequences	9
repurposing drugs	9
variant calling	9
snp calling	9
public health	9
brain fgn	9
sequencing technology	9
mapping reads	9
randomly sampled	9
motif syntax	9
vector contamination	9
two methods	9
cancer genes	9
basic bert	9
data sharing	9
knowledge graphs	9
expression omnibus	9
hidden markov	9
pachterlab bp	9
human cancer	9
tumor cell	9
quantification methods	9
nine data	9
logistic regression	9
results suggest	9
pubmed https	9
ad traits	9
usa department	9
rqvmzs fjzp	9
anchor vertices	9
prokaryotic ssu	9
protvec embedding	9
biomedical informatics	9
hippocampus samples	9
en si	9
rnaseq data	9
features selected	9
frequency method	9
average prr	8
github repository	8
tumour genome	8
ravlt forgetting	8
wgs filter	8
peak detection	8
edu https	8
full list	8
feature representations	8
rob patro	8
set condition	8
statistical computing	8
construction time	8
rqvmzs tcb	8
analysis tools	8
rv ed	8
allows users	8
minimizer compatible	8
anchor assignment	8
jain et	8
genomic distributions	8
mrna filter	8
synonymous mutations	8
cell population	8
superior performance	8
cluster labels	8
vp protein	8
host response	8
colored paths	8
remaining genes	8
human cancers	8
subjects within	8
expected vaf	8
prostate cancer	8
activation loop	8
research council	8
cancer detection	8
birth rate	8
better results	8
research community	8
important role	8
tls ti	8
surface receptor	8
molecular unit	8
hg systems	8
case studies	8
desktop application	8
thioguanosine log	8
exon usage	8
cancer genomics	8
expression profiling	8
de transcripts	8
may include	8
main text	8
count vectorizer	8
six liver	8
genomic dna	8
compatible minimizers	8
marv vp	8
cancer classification	8
human cohorts	8
feature matrix	8
rqvmzs tmou	8
also provides	8
human genes	8
small human	8
information retrieval	8
zheng et	8
genes whose	8
line options	8
different cancer	8
rqvmzs uxwc	8
estimated turnover	8
neuroimaging initiative	8
genome annotation	8
differential analysis	8
cell atlas	8
results showed	8
progenitor cells	8
proton pump	8
rqvmzs ueke	8
low nitrogen	8
type specific	8
plot shows	8
metagenomic samples	8
future work	8
semantic graph	8
different time	8
psi values	8
pooling operation	8
new england	8
variant reports	8
per sequence	8
org abs	8
functional evidence	8
noncoding rnas	8
ligand types	8
accurately predict	8
disease neuroimaging	8
transcription factors	8
intron signal	8
rqvmzs mwfz	8
rqvmzs ix	8
science foundation	8
kallisto alevin	8
functionally related	8
kinase conformations	8
birnn model	8
cdr score	8
data availability	8
reference graph	8
rqvmzs bhgv	8
high throughput	8
size reduction	8
site frequency	8
selected weight	8
output structure	8
bulk parent	8
size values	8
dcgerard ldsep	8
lowering intervention	8
phage genomes	8
mcmc simulations	8
mca datasets	8
methods like	8
data mining	8
charged contexts	8
england journal	8
euclidean distance	8
immune cells	8
level abundances	8
seq reveals	8
also found	8
next generation	8
similar cells	8
mutant reads	8
wild type	8
uniform manifold	8
clinical endpoints	8
eukaryotic ssu	8
project administration	8
test sets	8
average ari	8
mbf biosciences	8
analysis scripts	8
liver samples	8
viral integration	8
read count	8
los angeles	8
energy deficit	8
across cells	8
mean abundance	8
motif mixture	8
new view	8
fusion point	8
gm datasets	8
smartreference ruyzz	8
significant difference	8
bayesian approach	8
comput biol	8
small sample	8
validation set	8
nelfinavir drc	8
anisomycin log	8
different conformations	8
bfimpute improves	8
lung cancer	8
prediction algorithms	8
parameter values	8
massively parallel	8
target group	8
default parameter	8
group group	8
focal amplifications	8
differential exon	8
random walks	8
agbm sample	8
semantic type	8
cell technologies	8
standard deviations	8
individual target	8
viral infection	8
squared errors	8
expression matrices	8
density estimates	8
omics data	8
dataset description	8
expression analyses	8
research institute	8
scc value	8
hierarchical model	8
gene pairs	8
required metadata	8
step ii	8
neighborhood sequences	8
microscope image	8
absolute value	8
disease maps	8
com https	8
se rv	8
widely used	8
seq pre	8
coding genes	8
positive rate	8
artificial intelligence	8
imaging flow	8
refseq filter	8
hpv genome	8
rna ti	8
relevant gene	8
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rqvmzs df	8
relevant genes	8
true values	8
samples using	8
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manifold approximation	8
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true positive	8
using hierarchical	8
biological variations	8
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determined using	8
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short reads	8
related work	8
using different	8
profile hmms	8
cancer type	8
biological function	8
drug design	8
tested whether	8
raw nucleotide	8
national cancer	8
cycle genes	8
one another	8
residue numbering	8
ad adrd	8
numbering scheme	8
gene lists	8
repurposing screenings	8
motif sequence	8
vector machine	8
drug targets	8
three methods	8
shortest path	8
ad genes	8
information presented	8
human junction	8
gene gene	8
cell resolution	8
immune cell	8
population structure	8
vanilla pca	8
baseline methods	8
sparc consortium	8
sparc investigators	8
least two	7
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ann arbor	7
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formal analysis	7
rqvmzs pf	7
srcdb pdb	7
expressions among	7
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ncbi sra	7
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kjin ujyyq	7
selected based	7
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gut microbiota	7
human tissues	7
drug safety	7
rqvmzs ji	7
license cc	7
gsea bar	7
panel ii	7
tcb http	7
gene annotation	7
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cervical cancer	7
interstitial lung	7
van rooij	7
rqvmzs ug	7
set heuristics	7
gene symbol	7
ravlt learning	7
personalized medicine	7
family dissimilarity	7
reference variation	7
liquid biopsy	7
ydma http	7
org seurat	7
niagads alzheimer	7
transcript counts	7
xist regulator	7
high turnover	7
sequencing studies	7
annotated cell	7
gene targets	7
response variable	7
unique rows	7
used two	7
rqvmzs bd	7
matrix ws	7
bayesian inference	7
semantic predicates	7
curation process	7
recall curve	7
ueke http	7
transcript level	7
type annotation	7
proposed methods	7
umi resolution	7
previously proposed	7
end positions	7
posterior moments	7
high quality	7
proc natl	7
gradient descent	7
using normative	7
related pathways	7
missing data	7
target interaction	7
multiple mapped	7
rahul satija	7
sliding windows	7
structure prediction	7
taxonomic groups	7
pcc value	7
vice versa	7
cancer diagnosis	7
two versions	7
differential splicing	7
previous studies	7
immune system	7
cortical regions	7
hard motif	7
different combinations	7
mqr http	7
tissue type	7
regulator hgnc	7
eddy sr	7
pediatric gbm	7
log fcs	7
much higher	7
yv http	7
will help	7
mutation rates	7
single path	7
islet cells	7
described previously	7
yarza set	7
alternative splicing	7
bar full	7
standalone program	7
variable genes	7
rqvmzs tqet	7
nat genet	7
input file	7
extra trees	7
kinase domain	7
fungal ssu	7
suffix array	7
cell journal	7
vql query	7
nucleotide variants	7
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every window	7
glz http	7
cell linage	7
harmonization techniques	7
different models	7
short article	7
perfect minimizer	7
rowdiff paths	7
computational approaches	7
data standards	7
data visualization	7
using rna	7
position representation	7
expression patterns	7
radboud university	7
across multiple	7
statistical association	7
ftx transcript	7
death rate	7
certified bythis	7
van loo	7
rqvmzs glz	7
cell epigenomic	7
trajectory inference	7
three fields	7
binary matrix	7
life sciences	7
clin pharmacol	7
copy state	7
caravagna et	7
human mouse	7
umap space	7
rna fragment	7
cognitive impairment	7
related information	7
common form	7
ap gd	7
rna sequence	7
data pre	7
gains detected	7
acad sci	7
mutational burden	7
cells using	7
existing tools	7
research center	7
drug development	7
network analysis	7
functional characterization	7
avi srivastava	7
table shows	7
healthy individuals	7
may also	7
rqvmzs ncpj	7
phe side	7
gbm sample	7
conformational labels	7
associated ild	7
large scale	7
motif phosphorylation	7
reviews genetics	7
rqvmzs er	7
distance metric	7
negative genes	7
complete results	7
structure files	7
rqvmzs mqr	7
accession numbers	7
coordinate files	7
oryza sativa	7
unit variance	7
data center	7
fjzp http	7
vg toolkit	7
data portal	7
rqvmzs cimd	7
real hi	7
allowed us	7
expected number	7
liu et	7
posterior distribution	7
bythis version	7
rqvmzs ydma	7
second stage	7
models using	7
sequenced cancer	7
noise level	7
cimd http	7
rrna mitochondria	7
median js	7
fasta file	7
using deep	7
negative samples	7
gray matter	7
health research	7
root mean	7
active state	7
age range	7
log fold	7
ncpj http	7
reference databases	7
first principal	7
month year	7
random forests	7
communication networks	7
polya sites	7
umap visualisation	7
computation time	7
scatac datasets	7
functional impact	7
file containing	7
article title	7
empirical data	7
internationalpeer review	7
coexpression network	7
susin et	7
expression table	7
zheng dataset	7
false negatives	7
segregant analysis	7
wheeler transform	7
second step	7
tyrosine phosphatase	7
sample cgy	7
chqb https	7
simple bayesian	7
different samples	7
site variation	7
two cell	7
squared test	7
nat commun	7
coli genomes	7
rrna mito	7
seq files	7
life cycle	7
protein structure	7
exposure phenotypes	7
plasma cells	7
neighbourhood graphs	7
ncrna fragment	7
genome analysis	7
data collection	7
chinese academy	7
hot encoding	7
bone marrow	7
vp marv	7
ribosomal genes	7
expected hitting	7
functional annotations	7
three cell	7
true positives	7
blastn database	7
fungal lsu	7
cts sizes	7
dihedral label	7
energy saver	7
hub genes	7
rk ts	7
cancer gene	7
motif scores	7
arabidopsis thaliana	7
cell analysis	7
input parameters	7
normalized mutual	7
mwfz http	7
whole genomes	7
fitting procedure	7
tqet http	7
idf vectorizer	7
chqb http	7
genome assemblies	7
cdsll https	7
supplemental material	7
embedding space	7
cell omics	7
second layer	7
test whether	7
zero values	7
large subunit	7
count matrices	7
dynamical relationships	7
rqvmzs rl	7
associated variants	7
lung disease	7
human lung	7
wpg http	7
among different	7
per site	7
nucleotide polymorphisms	7
browse page	7
cell rep	7
using linear	7
pdb prop	7
specific manner	7
ense ftx	7
zakeri et	7
genome structure	7
crispr spacers	7
org abide	7
high degree	7
genetic algorithm	6
genetic data	6
web applications	6
fungal refseq	6
three ad	6
nonnegative matrix	6
ew ix	6
positional signal	6
like small	6
lu et	6
cell related	6
ambiguous nucleotides	6
johnson et	6
pfi stad	6
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trna synthetase	6
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bits per	6
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features associated	6
using either	6
clinical dementia	6
embedding layer	6
zohm http	6
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transcript lncrna	6
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cell trajectories	6
will also	6
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colorblind readers	6
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plger diffutr	6
deep generative	6
mayo clinic	6
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nk cells	6
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van dijk	6
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kjin pwvxf	6
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td vb	6
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vqgd http	6
com oluwadarelab	6
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ding datasets	6
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kjin tegbs	6
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nar gky	6
types across	6
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oluwadarelab particlechromo	6
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ip rk	6
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rev genet	6
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ieee international	6
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justin sybrandt	6
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hirak sarkar	6
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yuen et	6
approximately half	6
markov model	6
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rqvmzs sxxl	6
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three clustering	6
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worth noting	6
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ty fa	6
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lightweight single	6
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nanopore sequencing	6
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percent identity	6
also show	6
different genes	6
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ad swapping	6
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genomic evidence	6
terminal state	6
cid cid	6
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true negatives	6
research data	6
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quantified values	6
bioinformatic tools	6
ontology terms	6
com plger	6
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protein tyrosine	6
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vm achieved	6
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china national	6
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kjin kb	6
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mutation census	6
plastid filter	6
wide expression	6
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end joining	6
chapel hill	6
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alzheimers dis	6
jaspar motif	6
diverse scrna	6
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types based	6
magnetic resonance	6
ieee transactions	6
cts solutions	6
modal imaging	6
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transcript sequence	6
small set	6
ding et	6
com alexmascension	6
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seven different	6
along branch	6
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ravlt immediate	6
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hpv genomes	6
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mouse genome	6
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fa ct	6
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plant cell	6
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neck squamous	6
data across	6
cell heterogeneity	6
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alternative polyadenylation	6
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two ways	6
pancreatic beta	6
changepoint analysis	6
side chain	6
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tmou http	6
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rqvmzs yagn	6
introduction methods	6
end reads	6
absent strains	6
shobistassen via	6
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two genes	6
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continuous relaxation	6
dna repair	6
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vg http	5
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image acquisition	5
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ebi gwas	5
se santai	5
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ovhrz http	5
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connection layer	5
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rrna genes	5
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ma datasets	5
adenocarcinoma transcript	5
ild involving	5
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mock dataset	5
bp terms	5
smartreference dt	5
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protein expression	5
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clean dataset	5
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south african	5
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mol biol	5
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js distances	5
sra database	5
zgbvl http	5
saliency map	5
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cell cnv	5
ref allele	5
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human chromosome	5
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temporal dynamics	5
constant time	5
roc auc	5
mereu et	5
two groups	5
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north carolina	5
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mouse pancreatic	5
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hi li	5
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acr aal	5
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multiple myeloma	5
method based	5
bam uk	5
also identified	5
human gut	5
human pbmcs	5
long noncoding	5
publically available	5
recent years	5
submission checking	5
noise ratio	5
log transformation	5
recurrent neural	5
data obtained	5
number variation	5
scatter plots	5
decoupling algorithm	5
external resources	5
results also	5
coupled receptor	5
seven methods	5
best et	5
method outperforms	5
cell labels	5
multiple times	5
spectrum disorder	5
approach using	5
pfi skcm	5
bmc syst	5
ksjuz http	5
cluster patterns	5
values using	5
current signals	5
sncrna fragments	5
supplemental information	5
funding acquisition	5
utr bins	5
losses detected	5
lowering interventions	5
molecular subtypes	5
linear time	5
coordinated degs	5
rowdiff path	5
intrinsically disordered	5
pfi esca	5
data will	5