This is a table of type quadgram and their frequencies. Use it to search & browse the list to learn more about your study carrel.
quadgram | frequency |
---|---|
in the presence of | 250 |
in the case of | 127 |
as well as the | 123 |
the structure of the | 122 |
can be used to | 118 |
on the other hand | 106 |
is one of the | 101 |
one of the most | 93 |
the crystal structure of | 82 |
on the basis of | 81 |
a wide range of | 78 |
in the absence of | 77 |
as a function of | 77 |
an important role in | 77 |
it is possible to | 70 |
for the development of | 69 |
has been shown to | 67 |
a large number of | 66 |
the role of the | 66 |
on the surface of | 64 |
the aim of this | 62 |
for the treatment of | 60 |
was found to be | 59 |
severe acute respiratory syndrome | 55 |
we were able to | 55 |
the protein data bank | 55 |
in the present study | 54 |
in this study we | 54 |
in vitro and in | 53 |
the presence of a | 52 |
a key role in | 52 |
the presence of the | 52 |
crystal structure of the | 52 |
as a result of | 51 |
work was supported by | 51 |
the size of the | 51 |
is based on the | 50 |
the effect of the | 49 |
in this work we | 49 |
solid phase peptide synthesis | 49 |
for the design of | 49 |
vitro and in vivo | 49 |
this work was supported | 49 |
it was found that | 48 |
the nature of the | 48 |
to the formation of | 47 |
play an important role | 47 |
for the synthesis of | 46 |
in the development of | 45 |
the formation of a | 44 |
with respect to the | 44 |
in addition to the | 43 |
for the first time | 43 |
it was shown that | 42 |
the interaction of the | 42 |
to be involved in | 41 |
at the end of | 41 |
the active site of | 41 |
been shown to be | 41 |
of this study was | 40 |
the formation of the | 40 |
were found to be | 40 |
the surface of the | 40 |
has been used to | 39 |
as well as in | 39 |
it has been shown | 39 |
the length of the | 39 |
can be used for | 38 |
the end of the | 38 |
of the amino acid | 38 |
we found that the | 38 |
in the regulation of | 38 |
the stability of the | 38 |
aim of this study | 37 |
this study was to | 37 |
the secondary structure of | 37 |
in the present work | 37 |
for the study of | 37 |
we have shown that | 37 |
have been used to | 36 |
similar to that of | 36 |
in the formation of | 36 |
in the context of | 36 |
plays an important role | 35 |
the analysis of the | 35 |
has been shown that | 35 |
have shown that the | 35 |
we have developed a | 34 |
at the same time | 34 |
by the presence of | 34 |
our results show that | 33 |
vp vp vp vp | 33 |
structure and function of | 33 |
it is important to | 33 |
we show that the | 33 |
was shown to be | 33 |
the development of new | 32 |
these results suggest that | 32 |
can be used as | 32 |
have been shown to | 32 |
to that of the | 31 |
the central nervous system | 31 |
to the presence of | 31 |
in contrast to the | 31 |
results show that the | 31 |
the conformation of the | 31 |
in the range of | 31 |
the mechanism of action | 30 |
the results show that | 30 |
the d structure of | 30 |
a member of the | 30 |
the function of the | 30 |
molecular dynamics simulations of | 30 |
the results of the | 30 |
was used as a | 30 |
crystal structure of a | 30 |
the amino acid sequence | 29 |
that can be used | 29 |
it is known that | 29 |
we have investigated the | 29 |
in a variety of | 28 |
used to determine the | 28 |
mechanism of action of | 28 |
the basis of the | 28 |
of rna secondary structures | 28 |
the influence of the | 28 |
in the field of | 27 |
plays a key role | 27 |
the accuracy of the | 27 |
the development of a | 27 |
a wide variety of | 27 |
the biological activity of | 27 |
we have found that | 27 |
in the treatment of | 27 |
the mechanism of the | 27 |
the importance of the | 27 |
structure and dynamics of | 27 |
the free energy of | 26 |
d structure of the | 26 |
the ability of the | 26 |
the determination of the | 26 |
the structure of a | 26 |
in order to obtain | 26 |
the interaction between the | 26 |
a crucial role in | 25 |
is known to be | 25 |
as well as to | 25 |
a better understanding of | 25 |
better understanding of the | 25 |
the binding of the | 25 |
the use of the | 25 |
of the active site | 25 |
the rest of the | 25 |
for the discovery of | 25 |
can be considered as | 25 |
at the molecular level | 25 |
a new class of | 25 |
it has been suggested | 24 |
using a combination of | 24 |
in order to study | 24 |
is shown in fig | 24 |
in the active site | 24 |
the molecular mechanism of | 24 |
were shown to be | 24 |
the study of the | 24 |
of the target protein | 24 |
to the development of | 23 |
are known to be | 23 |
play a role in | 23 |
the synthesis of the | 23 |
the use of a | 23 |
that there is a | 23 |
in the plasma membrane | 23 |
in order to understand | 23 |
of the secondary structure | 23 |
here we present a | 23 |
aim of this work | 23 |
on the use of | 23 |
as compared to the | 22 |
for the preparation of | 22 |
as well as their | 22 |
crystal structures of the | 22 |
in the number of | 22 |
the position of the | 22 |
a powerful tool for | 22 |
the properties of the | 22 |
our understanding of the | 22 |
of the binding site | 22 |
it is possible that | 22 |
for the detection of | 22 |
of amino acid residues | 22 |
of a series of | 22 |
in order to investigate | 22 |
for the prediction of | 21 |
the side chain of | 21 |
the molecular basis of | 21 |
of the plasma membrane | 21 |
of this study is | 21 |
the majority of the | 21 |
with the aim of | 21 |
the synthesis of a | 21 |
was supported by the | 21 |
can be found in | 21 |
has been suggested that | 21 |
a function of the | 21 |
in order to determine | 21 |
as a model system | 21 |
in the form of | 21 |
can be used in | 21 |
be used as a | 21 |
studies have shown that | 21 |
results suggest that the | 21 |
we have studied the | 21 |
in the identification of | 20 |
in the design of | 20 |
on the structure of | 20 |
little is known about | 20 |
of the most common | 20 |
is due to the | 20 |
in the course of | 20 |
be involved in the | 20 |
the case of the | 20 |
and molecular dynamics simulations | 20 |
with the help of | 20 |
in the central nervous | 20 |
results indicate that the | 20 |
for the formation of | 20 |
the aim of the | 20 |
secondary and tertiary structure | 20 |
of this work is | 19 |
the existence of a | 19 |
our results suggest that | 19 |
design and synthesis of | 19 |
in the process of | 19 |
the crystal structures of | 19 |
the fact that the | 19 |
in the protein data | 19 |
acute respiratory syndrome coronavirus | 19 |
here we report the | 19 |
it is necessary to | 19 |
of the structure of | 19 |
secondary structure of the | 19 |
the structure and dynamics | 19 |
the plasma membrane of | 19 |
for the identification of | 19 |
the changes in the | 19 |
the effects of the | 19 |
structure of the protein | 19 |
the quality of the | 19 |
is a member of | 19 |
in an effort to | 19 |
one of the main | 19 |
the design of new | 19 |
of a number of | 19 |
amino acid sequence of | 19 |
proteins and nucleic acids | 18 |
of the lipid bilayer | 18 |
active site of the | 18 |
the purpose of this | 18 |
used to study the | 18 |
by the formation of | 18 |
a change in the | 18 |
the development of the | 18 |
in the structure of | 18 |
a major role in | 18 |
for the binding of | 18 |
is consistent with the | 18 |
study was to investigate | 18 |
the structures of the | 18 |
in the vicinity of | 18 |
a high degree of | 18 |
with the use of | 17 |
confocal laser scanning microscopy | 17 |
on the analysis of | 17 |
we are able to | 17 |
have been found to | 17 |
at the level of | 17 |
order to understand the | 17 |
the sequence of the | 17 |
de novo design of | 17 |
the regulation of the | 17 |
in the crystal structure | 17 |
play a key role | 17 |
of intrinsic disorder in | 17 |
to the active site | 17 |
the presence of an | 17 |
is responsible for the | 17 |
plays a role in | 17 |
the interactions between the | 17 |
deposited in the pdb | 17 |
to the synthesis of | 17 |
amino acid residues in | 17 |
a role in the | 17 |
it is well known | 17 |
of the crystal structure | 17 |
is crucial for the | 17 |
are involved in the | 17 |
the dynamics of the | 17 |
due to the presence | 17 |
the interaction with the | 17 |
the structure and function | 17 |
have been found in | 17 |
as well as a | 17 |
for their ability to | 17 |
one of the major | 16 |
in a number of | 16 |
of the amino acids | 16 |
to the identification of | 16 |
is well known that | 16 |
a small number of | 16 |
of this work was | 16 |
it was suggested that | 16 |
in agreement with the | 16 |
for the production of | 16 |
by a combination of | 16 |
in order to identify | 16 |
for the determination of | 16 |
the complexity of the | 16 |
has been studied by | 16 |
we are interested in | 16 |
as a basis for | 16 |
the side chains of | 16 |
structural basis for the | 16 |
this work is to | 16 |
to be responsible for | 16 |
to the fact that | 16 |
in an attempt to | 16 |
was found that the | 16 |
in order to find | 16 |
and the number of | 16 |
the results indicate that | 16 |
based on the analysis | 16 |
a critical role in | 16 |
that the presence of | 16 |
the understanding of the | 16 |
for the investigation of | 16 |
can be applied to | 16 |
amino acids in the | 16 |
are responsible for the | 16 |
by means of the | 16 |
and the structure of | 16 |
of the compounds were | 16 |
this study is to | 16 |
in terms of the | 16 |
these results indicate that | 16 |
can be divided into | 16 |
the severe acute respiratory | 15 |
this work was to | 15 |
an essential role in | 15 |
our aim is to | 15 |
binding site of the | 15 |
play a crucial role | 15 |
should be noted that | 15 |
in order to improve | 15 |
for the analysis of | 15 |
study the effect of | 15 |
is believed to be | 15 |
peptides were synthesized by | 15 |
of the most important | 15 |
be considered as a | 15 |
it is shown that | 15 |
rna secondary structure prediction | 15 |
an increase in the | 15 |
was carried out by | 15 |
is related to the | 15 |
be responsible for the | 15 |
and biological activity of | 15 |
the results showed that | 15 |
the molecular mechanisms of | 15 |
was to investigate the | 15 |
the present work we | 15 |
the activity of the | 15 |
was shown that the | 15 |
is thought to be | 15 |
it should be noted | 15 |
key role in the | 15 |
to interact with the | 15 |
on the structure and | 15 |
on the nature of | 15 |
of the mechanism of | 15 |
the formation of an | 15 |
a broad range of | 15 |
the structural and functional | 15 |
the shape of the | 15 |
of the free energy | 15 |
the binding site of | 15 |
be used for the | 15 |
the evaluation of the | 15 |
in vivo and in | 15 |
the discovery of new | 14 |
be related to the | 14 |
our aim was to | 14 |
the drug discovery process | 14 |
of severe acute respiratory | 14 |
as shown in fig | 14 |
able to interact with | 14 |
mode of action of | 14 |
the core of the | 14 |
of a protein is | 14 |
it was observed that | 14 |
in the synthesis of | 14 |
the mechanical properties of | 14 |
than that of the | 14 |
as well as for | 14 |
study was supported by | 14 |
of reactive oxygen species | 14 |
of the human genome | 14 |
the infl uence of | 14 |
of the protein structure | 14 |
understand the role of | 14 |
in the study of | 14 |
influence of crystal packing | 14 |
region of the protein | 14 |
biological activity of the | 14 |
be important for the | 14 |
the identification of a | 14 |
is involved in the | 14 |
of the wild type | 14 |
italian institute of technology | 14 |
it has been proposed | 14 |
to better understand the | 14 |
the morphology of the | 14 |
structure of the complex | 14 |
which can be used | 14 |
to be the most | 14 |
in complex with the | 14 |
the development of novel | 14 |
the resolution of the | 14 |
have the ability to | 14 |
of intrinsically disordered proteins | 14 |
it is believed that | 14 |
during the course of | 14 |
to investigate the effect | 14 |
a new method for | 14 |
is dependent on the | 14 |
have been identified in | 14 |
comparable to that of | 14 |
of a variety of | 14 |
human immunodeficiency virus type | 14 |
the rational design of | 13 |
is likely to be | 13 |
is important for the | 13 |
the vast majority of | 13 |
by nuclear magnetic resonance | 13 |
and structural characterization of | 13 |
by the use of | 13 |
from the venom of | 13 |
the calculation of the | 13 |
in the secondary structure | 13 |
to be able to | 13 |
with a kagome lattice | 13 |
amino acid side chains | 13 |
and the stability of | 13 |
it is likely that | 13 |
in the binding site | 13 |
a homology model of | 13 |
the basis for the | 13 |
it has been concluded | 13 |
in such a way | 13 |
of the protein and | 13 |
the solution structure of | 13 |
this is due to | 13 |
by dynamic light scattering | 13 |
has proven to be | 13 |
is considered to be | 13 |
has been developed for | 13 |
with the active site | 13 |
shown to be a | 13 |
here we present the | 13 |
studied the effect of | 13 |
the location of the | 13 |
be due to the | 13 |
dynamics simulations of the | 13 |
investigate the effect of | 13 |
to be associated with | 13 |
as one of the | 13 |
we have used a | 13 |
the geometry of the | 13 |
to determine whether the | 13 |
in comparison with the | 13 |
that are involved in | 13 |
and nuclear magnetic resonance | 13 |
the organization of the | 13 |
and dynamics of the | 13 |
is shown in figure | 13 |
em structure of the | 13 |
the identification of the | 13 |
it was possible to | 13 |
are characterized by a | 13 |
of peptides and proteins | 13 |
order to investigate the | 13 |
and the use of | 13 |
purpose of this study | 13 |
the results of this | 13 |
is determined by the | 13 |
a model of the | 13 |
we showed that the | 13 |
as well as its | 13 |
a broad spectrum of | 13 |
and can be used | 13 |
investigated the effect of | 13 |
fluorescence resonance energy transfer | 13 |
is required for the | 13 |
and atomic force microscopy | 13 |
the orientation of the | 13 |
of the protein is | 13 |
the application of the | 13 |
of the interaction of | 13 |
of the formation of | 13 |
has emerged as a | 12 |
is the use of | 12 |
as a consequence of | 12 |
a limited number of | 12 |
comparative protein structure modeling | 12 |
and the ability to | 12 |
structure of the peptide | 12 |
we report the synthesis | 12 |
an understanding of the | 12 |
the context of the | 12 |
to be important for | 12 |
has been proposed that | 12 |
this is the first | 12 |
we find that the | 12 |
amino acid sequences of | 12 |
was used as the | 12 |
taking into account the | 12 |
as a starting point | 12 |
its interaction with the | 12 |
the present study we | 12 |
by means of a | 12 |
on the level of | 12 |
has been concluded that | 12 |
is based on a | 12 |
resulted in the identification | 12 |
we have synthesized a | 12 |
order to determine the | 12 |
and the development of | 12 |
the identifi cation of | 12 |
the difference in the | 12 |
to the design of | 12 |
in order to be | 12 |
the details of the | 12 |
the characterization of the | 12 |
the present study was | 12 |
are shown in figure | 12 |
it is difficult to | 12 |
the tertiary structure of | 12 |
has been found to | 12 |
of a set of | 12 |
a kagome lattice structure | 12 |
a new family of | 12 |
for each of the | 12 |
in a way that | 12 |
identification and characterization of | 12 |
a c p c | 12 |
for the purpose of | 12 |
is associated with the | 12 |
used to identify the | 12 |
the amino acid residues | 12 |
were tested for their | 12 |
of the number of | 12 |
our data suggest that | 12 |
structure of the rna | 12 |
was carried out using | 12 |
of the partition coefficient | 12 |
acid residues in the | 12 |
our results indicate that | 12 |
the aim of our | 12 |
to the discovery of | 12 |
vivo and in vitro | 12 |
the assembly of the | 12 |
on the number of | 12 |
the binding affinity of | 12 |
been developed for the | 12 |
have been able to | 12 |
in the pathogenesis of | 12 |
of human immunodeficiency virus | 12 |
in order to develop | 12 |
the binding pocket of | 12 |
in the search for | 12 |
a function of temperature | 12 |
secondary and tertiary structures | 12 |
could be used for | 12 |
the early stages of | 12 |
can also be used | 12 |
at the active site | 12 |
of the presence of | 12 |
a powerful tool to | 12 |
logarithm of the partition | 11 |
to be essential for | 11 |
graphene with a kagome | 11 |
the minor groove of | 11 |
a variety of biological | 11 |
a crystal structure of | 11 |
the number of structures | 11 |
on the type of | 11 |
understanding of the molecular | 11 |
of the effect of | 11 |
and transmission electron microscopy | 11 |
be attributed to the | 11 |
has been widely used | 11 |
have not yet been | 11 |
crucial role in the | 11 |
that the number of | 11 |
have been developed to | 11 |
to the cell surface | 11 |
and characterization of a | 11 |
was used to determine | 11 |
on the mechanism of | 11 |
have been developed for | 11 |
is supported by the | 11 |
seq x and seq | 11 |
plays a crucial role | 11 |
it has been demonstrated | 11 |
presence or absence of | 11 |
are one of the | 11 |
at the plasma membrane | 11 |
by solid phase peptide | 11 |
the viral life cycle | 11 |
performed in order to | 11 |
is a powerful tool | 11 |
are considered to be | 11 |
x and seq y | 11 |
used as a model | 11 |
method is based on | 11 |
sequences seq x and | 11 |
a starting point for | 11 |
the temperature dependence of | 11 |
we report on the | 11 |
it was proposed that | 11 |
based on the use | 11 |
results showed that the | 11 |
have also been used | 11 |
based on these observations | 11 |
a comparison of the | 11 |
the region of the | 11 |
plays a major role | 11 |
on the cell surface | 11 |
an increasing number of | 11 |
in the presence and | 11 |
both in vitro and | 11 |
protein structure and function | 11 |
new insights into the | 11 |
has been applied to | 11 |
understand the mechanism of | 11 |
the course of the | 11 |
the influence of crystal | 11 |
shed light on the | 11 |
that it is possible | 11 |
of a protein structure | 11 |
leads to the formation | 11 |
is similar to that | 11 |
investigate the role of | 11 |
have been used for | 11 |
the plasma membrane and | 11 |
here we show that | 11 |
base pair similarity score | 11 |
could be used to | 11 |
can be related to | 11 |
to study the effect | 11 |
on the secondary structure | 11 |
conformational changes of the | 11 |
is expected to be | 11 |
to the lack of | 11 |
the binding mode of | 11 |
proteins involved in the | 11 |
of the protein in | 11 |
the structural features of | 11 |
the vicinity of the | 11 |
may be used to | 11 |
in order to elucidate | 11 |
on the order of | 11 |
for a long time | 11 |
in good agreement with | 11 |
peptides derived from the | 11 |
has been implicated in | 11 |
in the lipid bilayer | 11 |
vascular endothelial growth factor | 11 |
are based on the | 11 |
and the presence of | 11 |
the difference between the | 11 |
van der waals interactions | 11 |
to understand the role | 11 |
is known about the | 11 |
the presence of two | 10 |
design of amino acid | 10 |
of proteins and nucleic | 10 |
the absence of the | 10 |
of some of these | 10 |
is present in the | 10 |
homology model of the | 10 |
in relation to the | 10 |
which is known to | 10 |
the conformational properties of | 10 |
of the present study | 10 |
structure of the n | 10 |
involved in the formation | 10 |
structure of a human | 10 |
into the active site | 10 |
high affinity for the | 10 |
of rna secondary structure | 10 |
be one of the | 10 |
prepared by solid phase | 10 |
will allow us to | 10 |
fluorescence recovery after photobleaching | 10 |
was supported by grant | 10 |
we have been able | 10 |
is mediated by the | 10 |
for the regulation of | 10 |
organic and biomolecular chemistry | 10 |
that the structure of | 10 |
synthesized a series of | 10 |
be used in the | 10 |
into the mechanism of | 10 |
at the atomic level | 10 |
strongly depends on the | 10 |
the partition coefficient in | 10 |
it has been found | 10 |
play important roles in | 10 |
can be explained by | 10 |
with the aim to | 10 |
we present a new | 10 |
the elucidation of the | 10 |
development of a new | 10 |
and dynamic light scattering | 10 |
structural features of the | 10 |
the spatial distribution of | 10 |
will be discussed in | 10 |
due to the lack | 10 |
been shown that the | 10 |
number of base pairs | 10 |
important role in the | 10 |
the knowledge of the | 10 |
we designed and synthesized | 10 |
the similarity of the | 10 |
be used to determine | 10 |
the surface of a | 10 |
order to study the | 10 |
to investigate the role | 10 |
of the severe acute | 10 |
affi nity for the | 10 |
play an essential role | 10 |
the affinity of the | 10 |
was found in the | 10 |
the kinetics of the | 10 |
when compared to the | 10 |
in the middle of | 10 |
a new approach to | 10 |
we have previously shown | 10 |
report the synthesis of | 10 |
a molecular mass of | 10 |
the low micromolar range | 10 |
and the effect of | 10 |
are a number of | 10 |
of the viral genome | 10 |
the scanning electron microscope | 10 |
as a part of | 10 |
the discovery of novel | 10 |
for the generation of | 10 |
in the binding pocket | 10 |
the presence or absence | 10 |
gives rise to a | 10 |
we have developed an | 10 |
root mean square deviation | 10 |
with the aid of | 10 |
an analysis of the | 10 |
the innate immune system | 10 |
and function of the | 10 |
with a variety of | 10 |
there are a number | 10 |
higher than that of | 10 |
for rna secondary structure | 10 |
is used as a | 10 |
revealed the presence of | 10 |
to bind to the | 10 |
it is also possible | 10 |
to show that the | 10 |
the stability of these | 10 |
to understand the mechanism | 10 |
we focus on the | 10 |
it is clear that | 10 |
can be obtained by | 10 |
the interior of the | 10 |
on the interaction of | 10 |
the mode of action | 10 |
in the activation of | 10 |
conformational changes in the | 10 |
we suggest that the | 10 |
dimensional structure of the | 10 |
in the same way | 10 |
with a number of | 10 |
regions of the protein | 10 |
to those of the | 10 |
the increase of the | 10 |
we will present the | 10 |
to determine the structure | 10 |
has been demonstrated that | 10 |
seems to be a | 10 |
that the use of | 10 |
a potent inhibitor of | 10 |
of the role of | 10 |
are listed in table | 10 |
the base of the | 10 |
to overcome this problem | 10 |
the redox pair dataset | 10 |
the prediction of the | 10 |
the relationship between the | 10 |
and their interactions with | 10 |
the lifetime of the | 10 |
as a template for | 10 |
leading to the formation | 10 |
through the formation of | 10 |
terminal region of the | 10 |
are located in the | 10 |
the increase in the | 10 |
structure of a protein | 10 |
the design of novel | 10 |
with the formation of | 10 |
the release of the | 10 |
for the presence of | 10 |
on the development of | 10 |
the catalytic domain of | 10 |
to the plasma membrane | 10 |
due to the high | 10 |
hungarian academy of sciences | 10 |
with respect to their | 10 |
in order to further | 9 |
play a major role | 9 |
in the control of | 9 |
the evolution of the | 9 |
studied the interaction of | 9 |
by surface plasmon resonance | 9 |
involved in the regulation | 9 |
rna secondary structures with | 9 |
a new approach for | 9 |
be divided into two | 9 |
pharmacology for drug discovery | 9 |
as well as with | 9 |
of the innate immune | 9 |
this suggests that the | 9 |
a web server for | 9 |
which is based on | 9 |
the primary structure of | 9 |
the thermal stability of | 9 |
of the polypeptide chain | 9 |
peptide corresponding to the | 9 |
structure and mechanism of | 9 |
the activation of the | 9 |
investigate the effects of | 9 |
in silico pharmacology for | 9 |
understanding the mechanism of | 9 |
been found to be | 9 |
on the conformation of | 9 |
in the low micromolar | 9 |
school of biological sciences | 9 |
binding site in the | 9 |
of the in vitro | 9 |
in order to test | 9 |
by the addition of | 9 |
a result of the | 9 |
with a series of | 9 |
acid sequence of the | 9 |
a key step in | 9 |
development and application of | 9 |
of a protein to | 9 |
they are involved in | 9 |
may be important for | 9 |
is to investigate the | 9 |
the physical properties of | 9 |
method for the synthesis | 9 |
used to assess the | 9 |
a central role in | 9 |
the binding of a | 9 |
may be related to | 9 |
also be used to | 9 |
are among the most | 9 |
that of the native | 9 |
we focused our attention | 9 |
in the template structure | 9 |
by the eudoc program | 9 |
the goal of this | 9 |
of science and technology | 9 |
to act as a | 9 |
these results show that | 9 |
in the near future | 9 |
the template and target | 9 |
a useful tool for | 9 |
in a range of | 9 |
to be due to | 9 |
the last few years | 9 |
it is unclear whether | 9 |
increase in the number | 9 |
these data suggest that | 9 |
are expected to be | 9 |
on the effect of | 9 |
the base pair similarity | 9 |
the selection of the | 9 |
nuclear magnetic resonance spectroscopy | 9 |
prediction of rna secondary | 9 |
and the role of | 9 |
the s b domain | 9 |
as part of the | 9 |
and in the presence | 9 |
the design and synthesis | 9 |
the presence of different | 9 |
has been found that | 9 |
it is not clear | 9 |
mechanical properties of the | 9 |
were carried out on | 9 |
similar to those of | 9 |
in the absence or | 9 |
from nt to nt | 9 |
one of the first | 9 |
in most of the | 9 |
in the current study | 9 |
used to analyze the | 9 |
of the catalytic domain | 9 |
a decrease in the | 9 |
we present a novel | 9 |
the value of the | 9 |
a large variety of | 9 |
have been characterized by | 9 |
it is based on | 9 |
and the active site | 9 |
methods have been developed | 9 |
in an in vitro | 9 |
the conformational behavior of | 9 |
such a way that | 9 |
this work we have | 9 |
a consequence of the | 9 |
due to the fact | 9 |
to the production of | 9 |
the active site and | 9 |
the concentration of the | 9 |
by the fact that | 9 |
silico pharmacology for drug | 9 |
peptides corresponding to the | 9 |
at different stages of | 9 |
is in agreement with | 9 |
have been proposed to | 9 |
found to be a | 9 |
the distance between the | 9 |
be taken into account | 9 |
we have determined the | 9 |
by atomic force microscopy | 9 |
as well as of | 9 |
the flexibility of the | 9 |
in the last decade | 9 |
were used for the | 9 |
of this type of | 9 |
solid phase synthesis of | 9 |
pseudo amino acid composition | 9 |
are shown in fig | 9 |
the presence of three | 9 |
the efficiency of the | 9 |
carried out using the | 9 |
were carried out using | 9 |
an example of a | 9 |
used in order to | 9 |
the conformation of a | 9 |
the free energy landscape | 9 |
in the viral life | 9 |
the distribution of the | 9 |
in a wide range | 9 |
of protein structure prediction | 9 |
be used to study | 9 |
from the analysis of | 9 |
of the structure and | 9 |
the center of the | 9 |
we focused on the | 9 |
it was concluded that | 9 |
the accessibility of the | 9 |
physical properties of the | 9 |
structures in the pdb | 9 |
is to understand the | 9 |
and its interaction with | 9 |
solved to atomic resolution | 9 |
the application of this | 9 |
we have designed and | 9 |
we conclude that the | 9 |
on the synthesis of | 9 |
the middle of the | 9 |
a model for the | 9 |
the pivot molecule rofecoxib | 9 |
the introduction of the | 9 |
is caused by the | 9 |
in the major groove | 9 |
of the use of | 9 |
the hypothesis that the | 9 |
for protein structure prediction | 9 |
sequence of amino acids | 9 |
were prepared by solid | 9 |
is also possible to | 9 |
the change in the | 9 |
it is essential to | 9 |
the lipid composition of | 9 |
the structural basis of | 9 |
part of the protein | 9 |
of one of the | 9 |
in addition to this | 9 |
focused our attention on | 9 |
is followed by a | 8 |
was carried out to | 8 |
it was demonstrated that | 8 |
with high affinity for | 8 |
russian academy of sciences | 8 |
the composition of the | 8 |
is a powerful technique | 8 |
may be responsible for | 8 |
appears to be a | 8 |
a detailed understanding of | 8 |
plays a critical role | 8 |
the presence of both | 8 |
of the central nervous | 8 |
have been widely used | 8 |
the effect of different | 8 |
of the effects of | 8 |
in order to increase | 8 |
of the peptide chain | 8 |
to the number of | 8 |
on the surfaces of | 8 |
conformational analysis of the | 8 |
in the training set | 8 |
of sequence and structure | 8 |
been applied to the | 8 |
and found that the | 8 |
from the protein data | 8 |
the reduction of the | 8 |
in order to explore | 8 |
by a number of | 8 |
was based on the | 8 |
can serve as a | 8 |
of these peptides to | 8 |
the protein of interest | 8 |
thermal stability of the | 8 |
compared to that of | 8 |
minimum energy conformations of | 8 |
it has also been | 8 |
have proven to be | 8 |
for the case of | 8 |
amino acids of the | 8 |
we have designed a | 8 |
the identity of the | 8 |
base pair similarity scores | 8 |
the prediction of protein | 8 |
the secondary structure and | 8 |
that there is an | 8 |
we describe the synthesis | 8 |
a novel approach to | 8 |
the plasma membrane is | 8 |
makes it possible to | 8 |
understanding of the structure | 8 |
the secondary structures of | 8 |
by solid phase synthesis | 8 |
the dynamics of a | 8 |
were used as a | 8 |
nmr structure of the | 8 |
for scanning electron microscopy | 8 |
it can be used | 8 |
this is the case | 8 |
are close to the | 8 |
a significant role in | 8 |
infl uence on the | 8 |
a large set of | 8 |
for the design and | 8 |
for the construction of | 8 |
the antimicrobial activity of | 8 |
of each amino acid | 8 |
of the binding pocket | 8 |
inhibitors of this enzyme | 8 |
rna secondary and tertiary | 8 |
and the effects of | 8 |
our goal is to | 8 |
structure of the enzyme | 8 |
we present the synthesis | 8 |
the sequence of a | 8 |
it has been reported | 8 |
is part of the | 8 |
have the potential to | 8 |
to the study of | 8 |
be used to predict | 8 |
the protein and the | 8 |
in the outer membrane | 8 |
of the peptide in | 8 |
as the number of | 8 |
which is responsible for | 8 |
and biological evaluation of | 8 |
in spite of the | 8 |
formation of amyloid fibrils | 8 |
used to measure the | 8 |
can be modulated by | 8 |
in the minor groove | 8 |
our results showed that | 8 |
there is evidence that | 8 |
by confocal laser scanning | 8 |
a part of the | 8 |
more than of the | 8 |
coupled folding and binding | 8 |
of proteins in the | 8 |
turned out to be | 8 |
in the concentration of | 8 |
data taken from the | 8 |
studied by means of | 8 |
for the role of | 8 |
good agreement with the | 8 |
may be involved in | 8 |
have been carried out | 8 |
and structural analysis of | 8 |
and differential scanning calorimetry | 8 |
the sum of the | 8 |
institute of physical chemistry | 8 |
a novel class of | 8 |
in the order of | 8 |
to the free energy | 8 |
the past few years | 8 |
the dependence of the | 8 |
order to identify the | 8 |
local structures and functions | 8 |
results of this study | 8 |
ray crystal structure of | 8 |
model of the protein | 8 |
by a variety of | 8 |
other members of the | 8 |
is the number of | 8 |
the guest and host | 8 |
been used to study | 8 |
nmr studies of the | 8 |
the conformational preferences of | 8 |
structure of the sars | 8 |
similar to that observed | 8 |
of a protein can | 8 |
has been determined by | 8 |
as an alternative to | 8 |
we have used the | 8 |
the comparison of the | 8 |
a multiple sequence alignment | 8 |
used to investigate the | 8 |
in our understanding of | 8 |
taking advantage of the | 8 |
the stabilization of the | 8 |
was used for the | 8 |
the mechanism by which | 8 |
drug discovery and development | 8 |
critical role in the | 8 |
with the experimental data | 8 |
we have demonstrated that | 8 |
this study we have | 8 |
method was used to | 8 |
due to its high | 8 |
of the interaction between | 8 |
order to obtain a | 8 |
have designed and synthesized | 8 |
is characterized by a | 8 |
as the sum of | 8 |
it may be possible | 8 |
have been made to | 8 |
in a large number | 8 |
is defined as the | 8 |
taken from the literature | 8 |
can be attributed to | 8 |
on the role of | 8 |
have found that the | 8 |
to be related to | 8 |
with the ability to | 8 |
has led to the | 8 |
showed the presence of | 8 |
of the peptide backbone | 8 |
aided design of amino | 8 |
the first step in | 8 |
we propose that the | 8 |
institute for biophysical chemistry | 8 |
by the lack of | 8 |
structures deposited in the | 8 |
we demonstrate that the | 8 |
have been implicated in | 8 |
aim of the present | 8 |
absence or presence of | 8 |
the results suggest that | 8 |
been solved to atomic | 8 |
in the early s | 8 |
which belongs to the | 8 |
on the formation of | 8 |
on the interaction between | 8 |
the production of a | 8 |
and tertiary structure motifs | 8 |
may be due to | 8 |
to be used as | 8 |
d xz and d | 8 |
of proteins and peptides | 8 |
of action of the | 8 |
play a critical role | 8 |
studies showed that the | 8 |
the binding properties of | 8 |
synthesis and biological activity | 8 |
to the analysis of | 8 |
to be used in | 8 |
the ability of a | 8 |
in the function of | 8 |
considered to be a | 8 |
work is supported by | 8 |
known to be a | 8 |
been used as a | 8 |
we studied the interaction | 8 |
of the local structures | 8 |
a new generation of | 8 |
we observed that the | 8 |
using surface plasmon resonance | 8 |
of the protein chain | 8 |
of a single protein | 8 |
as shown in figure | 8 |
goal of this study | 8 |
a great variety of | 8 |
may contribute to the | 8 |
in the area of | 8 |
the solubility of the | 8 |
close to each other | 8 |
the formation of amyloid | 8 |
that the active site | 8 |
and it has been | 8 |
an attractive target for | 8 |
from the active site | 8 |
on the membrane surface | 8 |
of a range of | 8 |
is a prerequisite for | 8 |
through a series of | 8 |
it is interesting to | 8 |
the observation that the | 8 |
side chains of the | 8 |
for the understanding of | 8 |
us to investigate the | 8 |
on the protein surface | 8 |
a wide spectrum of | 8 |
in the discovery of | 8 |
a new type of | 8 |
a series of peptides | 8 |
proven to be a | 8 |
of the quality of | 8 |
the minimum free energy | 8 |
of the genetic code | 8 |
in the framework of | 8 |
used to monitor the | 8 |
and the formation of | 8 |
have been applied to | 8 |
xz and d yz | 8 |
used to predict the | 8 |
of molecular dynamics simulations | 8 |
have a role in | 8 |
at the base of | 8 |
be explained by the | 8 |
have previously shown that | 8 |
the level of the | 8 |
role in the regulation | 8 |
a wide array of | 8 |
of sequences and structures | 8 |
terminal part of the | 8 |
on the solid support | 7 |
moloney murine leukemia virus | 7 |
are in good agreement | 7 |
for drug discovery s | 7 |
to play a role | 7 |
assumed to be the | 7 |
is limited by the | 7 |
key step in the | 7 |
and dynamics of a | 7 |
to the wild type | 7 |
we also found that | 7 |
the inhibitory effect of | 7 |
structure elements in the | 7 |
it has been recently | 7 |
we will show that | 7 |
with a set of | 7 |
the binding to the | 7 |
in the nucleus and | 7 |
used in combination with | 7 |
on the stability of | 7 |
to fold into a | 7 |
conformational change of the | 7 |
guest and host structures | 7 |
of low molecular weight | 7 |
the presence of this | 7 |
we developed a new | 7 |
the work was supported | 7 |
in the evolution of | 7 |
to play an important | 7 |
as a powerful tool | 7 |
the y e structure | 7 |
of hepatitis c virus | 7 |
of amino acids in | 7 |
is known that the | 7 |
of the enzyme and | 7 |
this indicates that the | 7 |
to the target protein | 7 |
a model system for | 7 |
review is given on | 7 |
the functional properties of | 7 |
make it possible to | 7 |
determine the effect of | 7 |
chemical properties of the | 7 |
of in silico methods | 7 |
docking and molecular dynamics | 7 |
structure and function in | 7 |
is diffi cult to | 7 |
fl uorescent amino acids | 7 |
the results from the | 7 |
of the fact that | 7 |
the molten globule state | 7 |
of in silico pharmacology | 7 |
data show that the | 7 |
based on these results | 7 |
assisted laser desorption ionization | 7 |
is not fully understood | 7 |
deeper understanding of the | 7 |
a potential target for | 7 |
as a target for | 7 |
for the mechanism of | 7 |
of the compounds with | 7 |
is essential for the | 7 |
in order to achieve | 7 |
conformational change in the | 7 |
starting point for the | 7 |
were designed and synthesized | 7 |
peptide was found to | 7 |
was added to the | 7 |
u r n a | 7 |
in the generation of | 7 |
institute for organic and | 7 |
were obtained from the | 7 |
we investigated the effect | 7 |
to the regulation of | 7 |
of the sars coronavirus | 7 |
our data show that | 7 |
tested for their ability | 7 |
and some of them | 7 |
to elucidate the molecular | 7 |
a protein can be | 7 |
that the majority of | 7 |
by molecular dynamics simulations | 7 |
major role in the | 7 |
the peptides were synthesized | 7 |
of the application of | 7 |
that are responsible for | 7 |
the top of the | 7 |
results have shown that | 7 |
an increase of the | 7 |
the structural properties of | 7 |
determine the structure of | 7 |
as well as other | 7 |
to the crystal structure | 7 |
can be represented as | 7 |
in the understanding of | 7 |
of the intrinsically disordered | 7 |
the treatment of the | 7 |
in peptides and proteins | 7 |
we report here the | 7 |
the limited number of | 7 |
of the present work | 7 |
have been identifi ed | 7 |
in this paper we | 7 |
the rna component of | 7 |
across the plasma membrane | 7 |
reported in the literature | 7 |
as well as by | 7 |
structural basis of the | 7 |
in the prediction of | 7 |
to the characterization of | 7 |
the integrity of the | 7 |
activity of the protein | 7 |
and the size of | 7 |
we would like to | 7 |
are taken into account | 7 |
the performance of the | 7 |
data in the literature | 7 |
even in the absence | 7 |
s ekins et al | 7 |
is the result of | 7 |
the green fluorescent protein | 7 |
of glutamic acid residues | 7 |
ray crystal structures of | 7 |
and is responsible for | 7 |
at a molecular level | 7 |
the most commonly used | 7 |
classification of proteins database | 7 |
the number of different | 7 |
the correlation between the | 7 |
when compared with the | 7 |
a l p r | 7 |
structure of the human | 7 |
the amino acid side | 7 |
the statistical significance of | 7 |
the significance of the | 7 |
is given on the | 7 |
the virus spike protein | 7 |
in order to evaluate | 7 |
to form amyloid fibrils | 7 |
state of the art | 7 |
for a set of | 7 |
defined in terms of | 7 |
but also in the | 7 |
been deposited in the | 7 |
essential role in the | 7 |
sequence identity between the | 7 |
the folding of the | 7 |
the recognition of the | 7 |
has been proposed to | 7 |
a new series of | 7 |
to study the interaction | 7 |
of interactions between the | 7 |
see table for references | 7 |
study the interaction of | 7 |
the secondary structure elements | 7 |
there is a growing | 7 |
used a combination of | 7 |
has been carried out | 7 |
r o o f | 7 |
a common feature of | 7 |
for formation of the | 7 |
amino acids at the | 7 |
discovery s ekins et | 7 |
to the existence of | 7 |
the ability to form | 7 |
one of the two | 7 |
to be crucial for | 7 |
have been deposited in | 7 |
central role in the | 7 |
of its interaction with | 7 |
j o u r | 7 |
a fraction of the | 7 |
it is suggested that | 7 |
were synthesized by the | 7 |
model was used to | 7 |
the hydrophobic core of | 7 |
the study of large | 7 |
are related to the | 7 |
the single molecule level | 7 |
to the understanding of | 7 |
to the use of | 7 |
the solid phase synthesis | 7 |
be found in the | 7 |
it is evident that | 7 |
we studied the effect | 7 |
the optimum source neutrons | 7 |
the specificity of the | 7 |
are similar to those | 7 |
than the number of | 7 |
isolated from the venom | 7 |
and is involved in | 7 |
approaches have been developed | 7 |
from the crystal structure | 7 |
if and only if | 7 |
by size exclusion chromatography | 7 |
was used to study | 7 |
in the absence and | 7 |
these findings suggest that | 7 |
for the use of | 7 |
rest of the protein | 7 |
was used to screen | 7 |
unpaired nucleotides in the | 7 |
can be obtained from | 7 |
ministry of science and | 7 |
as a model for | 7 |
is not limited to | 7 |
was supported by rfbr | 7 |
secondary structures with pseudoknots | 7 |
compared to the wild | 7 |
structural classification of proteins | 7 |
of the full length | 7 |
in the asymmetric unit | 7 |
each of the four | 7 |
at the cell surface | 7 |
the redox state of | 7 |
one of the best | 7 |
data suggest that the | 7 |
are a family of | 7 |
based on the crystal | 7 |
we present here a | 7 |
the possible role of | 7 |
max planck institute for | 7 |
o u r n | 7 |
for organic and biomolecular | 7 |
approach was used to | 7 |
be used as an | 7 |
for a variety of | 7 |
the differences between the | 7 |
in the endoplasmic reticulum | 7 |
is very similar to | 7 |
drug discovery s ekins | 7 |
in the cytoplasm and | 7 |
in order to control | 7 |
residues in a protein | 7 |
in order to gain | 7 |
the study of protein | 7 |
a function of time | 7 |
to investigate the effects | 7 |
the interactions of the | 7 |
is attached to the | 7 |
to the structure of | 7 |
were performed using the | 7 |
prior knowledge of the | 7 |
are consistent with the | 7 |
the solution conformation of | 7 |
to test this hypothesis | 7 |
that they can be | 7 |
an integral part of | 7 |
on the properties of | 7 |
through the use of | 7 |
has led to a | 7 |
on the presence of | 7 |
has recently been shown | 7 |
induces the formation of | 7 |
it is not known | 7 |
as the basis for | 7 |
the hydrophobicity of the | 7 |
present the synthesis of | 7 |
l p r e | 7 |
biological processes such as | 7 |
can be classified into | 7 |
the van der waals | 7 |
in silico screening of | 7 |
in our previous study | 7 |
the choice of the | 7 |
g u r e | 7 |
the two types of | 7 |
at the time of | 7 |
rna structure and dynamics | 7 |
in our work we | 7 |
the cell membrane and | 7 |
to be required for | 7 |
affi nity and selectivity | 7 |
lower than that of | 7 |
f i g u | 7 |
based drug design and | 7 |
by transmission electron microscopy | 7 |
takes into account the | 7 |
been proposed to be | 7 |
of the order of | 7 |
of secondary structure elements | 7 |
with the cell membrane | 7 |
is characterized by the | 7 |
copies of a single | 7 |
despite the fact that | 7 |
the binding site for | 7 |
experiments were carried out | 7 |
at the binding site | 7 |
that are able to | 7 |
the starting point for | 7 |
the absence or presence | 7 |
p r o o | 7 |
on the size of | 7 |
this work is supported | 7 |
the plane of the | 7 |
here we report a | 7 |
are found in the | 7 |
and its complex with | 7 |
by means of an | 7 |
as a set of | 7 |
hcv ns b polymerase | 7 |
a combination of the | 7 |
is not able to | 7 |
with a resolution of | 7 |
experimental and computational approaches | 7 |
and characterization of the | 7 |
and the characterization of | 7 |
the results of our | 7 |
have developed a novel | 7 |
using a variety of | 7 |
over a wide range | 7 |
of the target sequence | 7 |
has been used as | 7 |
conformation of the peptide | 7 |
of the transition state | 7 |
provide insight into the | 7 |
for the delivery of | 7 |
free energy of the | 7 |
nucleotides in the junction | 7 |
activity of the compounds | 7 |
of the protein that | 7 |
values of affinity energy | 7 |
state of the protein | 7 |
the investigation of the | 7 |
of the influence of | 7 |
we present a study | 7 |
with the exception of | 7 |
optimum source neutrons energy | 7 |
numbers of positional hits | 7 |
of the sars virus | 7 |
could be used as | 7 |
as a first step | 7 |
been used to determine | 7 |
be used to identify | 7 |
we also studied the | 7 |
phase peptide synthesis and | 7 |
k and na ions | 7 |
as a source of | 7 |
n a l p | 7 |
to a better understanding | 7 |
of the pivot molecule | 7 |
are in agreement with | 7 |
in view of the | 7 |
in the interaction with | 7 |
of a new class | 7 |
interesting to note that | 7 |
conformational changes associated with | 7 |
have been studied in | 7 |
to our understanding of | 7 |
a high level of | 7 |
the molecular details of | 7 |
the design of a | 7 |
in the last years | 7 |
molecular dynamics simulations in | 7 |
sequences that fold into | 7 |
has been developed to | 7 |
has shown that the | 7 |
was to determine the | 7 |
order to improve the | 7 |
led to the discovery | 7 |
was suggested that the | 7 |
supported in part by | 7 |
is very important for | 7 |
amino acid residues that | 7 |
the amino acid sequences | 7 |
the contribution of the | 7 |
i g u r | 7 |
the modulation of the | 7 |
a deeper understanding of | 7 |
site of the enzyme | 7 |
of the cell membrane | 7 |
regulation of gene expression | 7 |
the maintenance of the | 7 |
the goal is to | 7 |
institute of molecular biology | 7 |
absence and presence of | 7 |
a powerful technique for | 7 |
also been shown to | 7 |
by interacting with the | 7 |
infl uence of the | 7 |
hydrophobic core of the | 7 |
study of the interaction | 7 |
play a significant role | 7 |
we are studying the | 7 |
the structure of this | 7 |
on the sequence of | 7 |
the d structures of | 7 |
in the drug discovery | 7 |
r n a l | 7 |
over the past years | 6 |
in the redox pair | 6 |
of at least two | 6 |
the inhibition of the | 6 |
terminus of the protein | 6 |
is close to the | 6 |
that the interaction of | 6 |
are found to be | 6 |
of chemistry and biochemistry | 6 |
the number of base | 6 |
examined the effects of | 6 |
will be presented and | 6 |
is a target for | 6 |
the number of unique | 6 |
structure determination of the | 6 |
of each of the | 6 |
i and j are | 6 |
are of special interest | 6 |
a structural classification of | 6 |
this project is to | 6 |
isolation and characterization of | 6 |
a query sequence and | 6 |
as the size of | 6 |
in sequences seq x | 6 |
it is crucial to | 6 |
formation of the native | 6 |
the proteins in the | 6 |
the quality of a | 6 |
the result of a | 6 |
in part by the | 6 |
the loss of the | 6 |
results will be discussed | 6 |
methods can be used | 6 |
microwave assisted solid phase | 6 |
were calculated based on | 6 |
are likely to be | 6 |
to bridge the gap | 6 |
sequence seq x and | 6 |
in silico prediction of | 6 |
structural analysis of the | 6 |
fluorescence lifetime imaging microscopy | 6 |
were found to inhibit | 6 |
as shown by the | 6 |
to study the effects | 6 |
based on the sequence | 6 |
the lowest free energy | 6 |
and structure of the | 6 |
the small size of | 6 |
a review is given | 6 |
able to inhibit the | 6 |
at the beginning of | 6 |
of which are glutamic | 6 |
directly related to the | 6 |
was estimated to be | 6 |
which leads to the | 6 |
are more likely to | 6 |
can be defined as | 6 |
been shown to play | 6 |
as a tumor suppressor | 6 |
the tip of the | 6 |
due to the small | 6 |
represents one of the | 6 |
lipid composition of the | 6 |
interaction of the peptide | 6 |
the cambridge structural database | 6 |
by the interaction of | 6 |
the atomic resolution structure | 6 |
in the past years | 6 |
has been associated with | 6 |
for the elucidation of | 6 |
which is one of | 6 |
conformational preferences of the | 6 |
can be seen in | 6 |
be essential for the | 6 |
mainly due to the | 6 |
on the observation that | 6 |
p o a c | 6 |
the catalytic activity of | 6 |
study the role of | 6 |
to be critical for | 6 |
the prediction of rna | 6 |
the same way as | 6 |
sars cov main proteinase | 6 |
the activity of a | 6 |
expressed in escherichia coli | 6 |
the early stage of | 6 |
are currently in progress | 6 |
the de novo design | 6 |
features of local structures | 6 |
some of these peptides | 6 |
molecular dynamics simulations and | 6 |
database for the investigation | 6 |
the development of an | 6 |
is widely used for | 6 |
to the prediction of | 6 |
the cellular uptake of | 6 |
amino group of lysine | 6 |
compounds were calculated using | 6 |
optimal structure element alignment | 6 |
is widely accepted that | 6 |
investigated the influence of | 6 |
new light on the | 6 |
atomic structure of the | 6 |
it is easy to | 6 |
the free energies of | 6 |
the amber force field | 6 |
the compounds with the | 6 |
food and drug administration | 6 |
is shown that the | 6 |
the search of new | 6 |
to be important in | 6 |
more likely to be | 6 |
it is widely accepted | 6 |
for the interaction with | 6 |
with the target sequence | 6 |
of the side chains | 6 |
of g s in | 6 |
has been reported in | 6 |
of the large ribosomal | 6 |
to develop a new | 6 |
a large body of | 6 |
nmr and molecular modelling | 6 |
secondary structure in the | 6 |
designed and synthesized a | 6 |
keep in mind that | 6 |
it has recently been | 6 |
the in uence of | 6 |
the construction of a | 6 |
in the preparation of | 6 |
the ph of the | 6 |
the role of this | 6 |
the structural dynamics of | 6 |
in response to the | 6 |
be used to measure | 6 |
is used for the | 6 |
the same as in | 6 |
the protein in the | 6 |
assembled structures formed by | 6 |
we hypothesize that the | 6 |
the residues involved in | 6 |
to be included in | 6 |
of molecular biology and | 6 |
in the folding of | 6 |
which are able to | 6 |
the synthesis of peptides | 6 |
the enzymatic activity of | 6 |
a structural model for | 6 |
the state of the | 6 |
is an indication of | 6 |
have been associated with | 6 |
for a better understanding | 6 |
amino acids and peptides | 6 |
lead to a better | 6 |
of the importance of | 6 |
are of great interest | 6 |
the function of a | 6 |
our attention on the | 6 |
regions of secondary structure | 6 |
solution structure of the | 6 |
based on the structure | 6 |
is directly related to | 6 |
a binding site for | 6 |
characterization of a novel | 6 |
this is consistent with | 6 |
as long as the | 6 |
a novel approach for | 6 |
were observed in the | 6 |
the absence of any | 6 |
different parts of the | 6 |
and there is a | 6 |
steinem institute for organic | 6 |
the ebola virus glycoprotein | 6 |
in a study of | 6 |
protonation states of the | 6 |
in the sense that | 6 |
is the target of | 6 |
partial unfolding of the | 6 |
and the mechanism of | 6 |
by isothermal titration calorimetry | 6 |
led to the development | 6 |
by mass spectrometry and | 6 |
a high number of | 6 |
which is consistent with | 6 |
molecular dynamics simulation of | 6 |
were also found to | 6 |
is part of a | 6 |
water molecules in the | 6 |
presence and in the | 6 |
a protein structure into | 6 |
shown to be essential | 6 |
of the peptide sequence | 6 |
have been investigated by | 6 |
order to evaluate the | 6 |
with a view to | 6 |
with the increase of | 6 |
proteins database for the | 6 |
the activity of these | 6 |
into the role of | 6 |
as a model of | 6 |
also been used to | 6 |
a study of the | 6 |
by fl uorescence spectroscopy | 6 |
as well as some | 6 |
russian foundation for basic | 6 |
we propose a new | 6 |
for each of these | 6 |
has been suggested to | 6 |
ordered and disordered proteins | 6 |
in line with the | 6 |
at the surface of | 6 |
the first step of | 6 |
the purpose of the | 6 |
in the assembly of | 6 |
the number of structure | 6 |
to that of a | 6 |
department of biophysics and | 6 |
was carried out with | 6 |
into the host cell | 6 |
and the lack of | 6 |
a scaffold for the | 6 |
for the recognition of | 6 |
the conversion of the | 6 |
of this project is | 6 |
combined free energy and | 6 |
the formation of protein | 6 |
previous studies have shown | 6 |
with high affinity and | 6 |
insights into the mechanism | 6 |
we show here that | 6 |
biochemistry and molecular biology | 6 |
as an example of | 6 |
shown to play a | 6 |
in health and disease | 6 |
is the synthesis of | 6 |
the latent space of | 6 |
by the introduction of | 6 |
of a large number | 6 |
a unique feature of | 6 |
aim of our study | 6 |
the intensity of the | 6 |
pre to min post | 6 |
which is required for | 6 |
the large ribosomal subunit | 6 |
and isothermal titration calorimetry | 6 |
the solution structures of | 6 |
amino acid residues and | 6 |
were confi rmed by | 6 |
shows an example of | 6 |
the destabilization of the | 6 |
between local structures and | 6 |
of the proteins in | 6 |
changes in secondary structure | 6 |
of these two proteins | 6 |
is an example of | 6 |
in response to environmental | 6 |
in a previous study | 6 |
in the early stages | 6 |
in the light of | 6 |
structural and functional studies | 6 |
and stability of the | 6 |
there is still a | 6 |
in contrast to other | 6 |
has also been used | 6 |
and scanning electron microscopy | 6 |
ability to cross the | 6 |
in the second sequence | 6 |
there are glutamic acids | 6 |
the multimeric host system | 6 |
in order to better | 6 |
the outer membrane of | 6 |
to obtain information on | 6 |
first crystal structure of | 6 |
presence and absence of | 6 |
is very different from | 6 |
is formed by the | 6 |
a number of studies | 6 |
the design of the | 6 |
proteins that have been | 6 |
of biologically active peptides | 6 |
need to be considered | 6 |
in the transmembrane region | 6 |
on a set of | 6 |
a novel type of | 6 |
it seems to be | 6 |
to interfere with the | 6 |
in solid phase peptide | 6 |
the compounds were calculated | 6 |
to one of the | 6 |
crystal structure of human | 6 |
investigation of sequences and | 6 |
using molecular dynamics simulations | 6 |
for the characterization of | 6 |
on a molecular level | 6 |
an important step in | 6 |
a novel method for | 6 |
idprs are characterized by | 6 |
and a number of | 6 |
that the ability of | 6 |
of the binding sites | 6 |
allowed us to identify | 6 |
crystal structures of small | 6 |
withdrawing power of the | 6 |
tertiary structure of the | 6 |
amino acids can be | 6 |
it is proposed that | 6 |
due to the complexity | 6 |
and compared with the | 6 |
is illustrated in fig | 6 |
the first time that | 6 |
to investigate the structural | 6 |
one of the three | 6 |
will be used to | 6 |
on the set of | 6 |
as well as on | 6 |
active site and the | 6 |
investigated the effects of | 6 |
is a key step | 6 |
in the majority of | 6 |
a single amino acid | 6 |
to a set of | 6 |
studies were carried out | 6 |
on the cell membrane | 6 |
for the activation of | 6 |
the large number of | 6 |
the human genome project | 6 |
the presence and in | 6 |
are able to bind | 6 |
regression equations were calculated | 6 |
the mott cross section | 6 |
series of analogues of | 6 |
the absence and presence | 6 |
is a highly conserved | 6 |
presence of negatively charged | 6 |
a large amount of | 6 |
and small angle x | 6 |
by using a combination | 6 |
this region of the | 6 |
to the complexity of | 6 |
to the action of | 6 |
the elastic modulus of | 6 |
plays a central role | 6 |
of education and science | 6 |
of protein secondary structure | 6 |
slovak academy of sciences | 6 |
in order to verify | 6 |
are predicted to be | 6 |
at the site of | 6 |
structural biology in antiviral | 6 |
applied to study the | 6 |
of the ion channel | 6 |
the ways in which | 6 |
structure has been determined | 6 |
developed a method to | 6 |
single molecule force spectroscopy | 6 |
the origin of the | 6 |
types of amino acids | 6 |
in contact with the | 6 |
intrinsic fluorescence of the | 6 |
the active site residues | 6 |
the action of the | 6 |
here we describe the | 6 |
in antiviral drug discovery | 6 |
the effects of mutations | 6 |
the intermolecular interaction energy | 6 |
be applied to the | 6 |
is the fi rst | 6 |
to the loss of | 6 |
structure of an rna | 6 |
in the liver and | 6 |
proteins that are involved | 6 |
properties of the membrane | 6 |
there is a need | 6 |
organization and dynamics of | 6 |
the effects of different | 6 |
a component of the | 6 |
the dissociation of the | 6 |
an important class of | 6 |
the width of the | 6 |
linear and cyclic peptides | 6 |
anthology of intrinsic disorder | 6 |
there is an urgent | 6 |
and van der waals | 6 |
for a range of | 6 |
with that of the | 6 |
the active site is | 6 |
the basis of a | 6 |
of the selected compounds | 6 |
designed a series of | 6 |
to a large extent | 6 |
is supported by a | 6 |
to elucidate the role | 6 |
amino acid in the | 6 |
umbilical vein endothelial cells | 6 |
based on the observation | 6 |
lead to the formation | 6 |
studies have demonstrated that | 6 |
results in the formation | 6 |
which are known to | 6 |
to determine the effect | 6 |
carried out with the | 6 |
in the conformation of | 6 |
development of a novel | 6 |
as a model to | 6 |
amino acids that are | 6 |
the best of our | 6 |
in this study were | 6 |
insight into the molecular | 6 |
on the aggregation of | 6 |
is controlled by the | 6 |
amino acid composition of | 6 |
a representative set of | 6 |
the results of these | 6 |
binding mode of the | 6 |
in all of the | 6 |
as well as an | 6 |
the results demonstrate that | 6 |
of the folding process | 6 |
peptide synthesis in water | 6 |
the preparation of the | 6 |
best of our knowledge | 6 |
the lipid bilayer of | 6 |
out of the helix | 6 |
were calculated for the | 6 |
of the photosynthetic apparatus | 6 |
the replacement of the | 6 |
of water molecules in | 6 |
with a diameter of | 6 |
made it possible to | 6 |
are located within the | 6 |
drude polarizable force field | 6 |
a measure of the | 6 |
were synthesized and tested | 6 |
is composed of three | 6 |
comparative analysis of the | 6 |
dimensional structures of proteins | 6 |
is regulated by the | 6 |
is able to interact | 6 |
peptides were prepared by | 6 |
conformations of the compounds | 6 |
in comparison to the | 6 |
present study was to | 6 |
bridge the gap between | 6 |
requires the presence of | 6 |
can be studied by | 6 |
department of chemistry and | 6 |
synthesized by the solid | 6 |
the ability to bind | 6 |
for the separation of | 6 |
has allowed us to | 6 |
are believed to be | 6 |
the differences in the | 6 |
of amino acids with | 6 |
the lipid bilayer and | 6 |
and is associated with | 6 |
has also been suggested | 6 |
data were collected at | 6 |
has a number of | 6 |
analyzed in terms of | 6 |
increasing evidence suggests that | 6 |
plays an essential role | 6 |
of secondary structure in | 6 |
of these peptides in | 6 |
the removal of the | 6 |
the volume of the | 6 |
we have previously reported | 6 |
was applied to the | 6 |
the residues in the | 6 |
may be regarded as | 6 |
in the human genome | 6 |
small angle neutron scattering | 6 |
in terms of their | 6 |
signal to noise ratio | 6 |
to the family of | 6 |
without prior knowledge of | 6 |
some of them are | 6 |
atom molecular dynamics simulations | 6 |
on the ability of | 6 |
an extension of the | 6 |
approaches have been used | 6 |
we are investigating the | 6 |
and has been shown | 6 |
in the interior of | 6 |
nucleic acids in solution | 6 |
biology in antiviral drug | 6 |
and fluorescence correlation spectroscopy | 6 |
for the selection of | 6 |
of the simulation time | 6 |
and analysis of the | 6 |
from the fact that | 6 |
of amino acids that | 6 |
is an urgent need | 6 |
at the interface between | 6 |
as a tool for | 6 |
in the latent space | 6 |
agreement with experimental data | 6 |
activity as well as | 6 |
of one or more | 6 |
phase ii clinical trials | 6 |
on the rate of | 6 |
the role of these | 6 |
a and b are | 6 |
by fluorescence correlation spectroscopy | 6 |
inhibit the growth of | 6 |
the decrease of the | 6 |
have been synthesized and | 6 |
known to be involved | 6 |
the first crystal structure | 6 |
been widely used to | 6 |
was then used to | 6 |
a dynamic programming algorithm | 6 |
to that observed in | 6 |
to the best of | 6 |
functional anthology of intrinsic | 6 |
further our understanding of | 6 |
to be one of | 6 |
the magnitude of the | 6 |
different from that of | 6 |
binding sites in the | 6 |
the structural basis for | 6 |
to a resolution of | 6 |
have been recognized as | 6 |
is unclear whether the | 6 |
to its ability to | 6 |
of the membrane and | 6 |
which has been shown | 6 |
the dimensions of the | 6 |
web server for the | 6 |
for a series of | 6 |
is represented by a | 6 |
in the first sequence | 6 |
ministry of education and | 6 |
recent studies have shown | 6 |
has been observed in | 6 |
has the advantage of | 6 |
the human immunodeficiency virus | 6 |
from amino acid sequence | 6 |
the peptide backbone and | 6 |
size and distance cutoff | 6 |
of the nature of | 6 |
was attributed to the | 6 |
a fundamental role in | 6 |
in the past few | 6 |
protein misfolding and aggregation | 6 |
used for the treatment | 6 |
the potential use of | 6 |
and in the absence | 6 |
here we report on | 6 |
very similar to that | 6 |
been identified in the | 6 |
of this approach is | 6 |
is critical for the | 6 |
the wild type and | 6 |
was observed in the | 6 |
of this paper is | 6 |
the development of peptide | 6 |
it is not surprising | 6 |
of nucleic acid drugs | 6 |
molecular dynamics simulations were | 6 |
we have also observed | 6 |
that the position of | 6 |
the use of this | 6 |
the active sites of | 6 |
we have also performed | 6 |
these results provide a | 6 |
the interface between the | 6 |
in the first step | 6 |
binding sites of the | 6 |
the search for new | 6 |
in the solid state | 6 |
for transmission electron microscopy | 6 |
and selectivity of the | 6 |
at different spatial scales | 6 |
an important component of | 6 |
of the proteins were | 6 |
assisted solid phase peptide | 6 |
binding sites in proteins | 6 |
in the determination of | 6 |
studies revealed that the | 6 |
are used in the | 6 |
the ligand to the | 6 |
were consistent with the | 6 |
the effect of these | 6 |
of protein intrinsic disorder | 6 |
the number of possible | 6 |
ligand binding to the | 6 |
the investigation of sequences | 6 |
folding and stability of | 6 |
to the stability of | 6 |
of cell biology and | 6 |
of the viral rna | 6 |
as a tool to | 6 |
we have measured the | 6 |
comparative modeling and ligand | 6 |
play key roles in | 6 |
amino acids in positions | 6 |
the number of known | 6 |
human umbilical vein endothelial | 6 |
our results demonstrate that | 6 |
is the ability to | 6 |
the presence of mm | 6 |
human islet amyloid polypeptide | 6 |
may play a role | 6 |
the main goal of | 6 |
well as in the | 6 |
the introduction of a | 6 |
to the surface of | 6 |
that the binding of | 6 |
free energy and similarity | 6 |
basis for design of | 6 |
the generation of a | 6 |
order to elucidate the | 6 |
we believe that the | 6 |
intrinsically disordered proteins in | 6 |
in terms of sensitivity | 6 |
be included in the | 6 |
is of particular interest | 6 |
to investigate the structure | 6 |
in the previous section | 6 |
is composed of a | 6 |
have been successfully used | 6 |
in supplementary table s | 6 |
and the structures of | 6 |
and d yz orbitals | 6 |
the protonation states of | 6 |
the presence of ca | 6 |
are important for the | 6 |
referred to as the | 6 |
we have recently shown | 6 |
described in the literature | 6 |
may be possible to | 6 |
believed to play a | 6 |
high performance liquid chromatography | 6 |
of proteins database for | 6 |
the standard energy model | 6 |
ph and ionic strength | 6 |
power of the substituent | 5 |
the biophysical properties of | 5 |
using a set of | 5 |
this work we report | 5 |
of the interactions between | 5 |
be used to detect | 5 |
drug design using catalyst | 5 |
confocal laser scanning microscope | 5 |
the catalytic mechanism of | 5 |
between a query sequence | 5 |
the sensitivity of the | 5 |
involved in regulation of | 5 |
of the backbone atoms | 5 |
the structure can be | 5 |
has been identified as | 5 |
a key regulator of | 5 |
at an early stage | 5 |
to be a key | 5 |
the role played by | 5 |
of the extracellular matrix | 5 |
the cyp c crystallographic | 5 |
order to obtain the | 5 |
site of the protein | 5 |
it is also known | 5 |
rna polymerase of poliovirus | 5 |
an example of this | 5 |
glutamic and aspartic acids | 5 |
to the pivot compound | 5 |
we believe that these | 5 |
in this poster we | 5 |
a correlation between the | 5 |
at a rate of | 5 |
will be able to | 5 |
the intrinsic fluorescence of | 5 |
we have developed new | 5 |
the single molecular level | 5 |
second part of the | 5 |
phase peptide synthesis method | 5 |
template and target proteins | 5 |
of protein structure by | 5 |
acid residue in position | 5 |
lipid bilayer of the | 5 |
experiments have shown that | 5 |
in the amino acid | 5 |
the enzyme active site | 5 |
study we investigated the | 5 |
studies were performed with | 5 |
a significant fraction of | 5 |
and surface plasmon resonance | 5 |
using transmission electron microscopy | 5 |
role in stabilizing the | 5 |
and optimisation of new | 5 |
found to be the | 5 |
also known as the | 5 |
the metabolic stability of | 5 |
results will be presented | 5 |
and biological properties of | 5 |
as the presence of | 5 |
we have recently developed | 5 |
and lmqc structures are | 5 |
the importance of a | 5 |
small molecule inhibitors of | 5 |
can be done by | 5 |
structural changes in the | 5 |
spatial and temporal resolution | 5 |
the functioning of the | 5 |
were synthesized by fmoc | 5 |
three domains of life | 5 |
region of the spectrum | 5 |
were performed in order | 5 |
idps idprs are characterized | 5 |
in the brain and | 5 |
can be described as | 5 |
it is responsible for | 5 |
but little is known | 5 |
for its ability to | 5 |
according to the following | 5 |
both in the presence | 5 |
the objective of the | 5 |
can be determined by | 5 |
in regulation of the | 5 |
been successfully used to | 5 |
residues in this region | 5 |
parallel to the membrane | 5 |
which are found in | 5 |
the tree width of | 5 |
the global optimal threading | 5 |
stability of a protein | 5 |
in addition to their | 5 |
will be used in | 5 |
the time evolution of | 5 |
is used in the | 5 |
been suggested to be | 5 |
used to calculate the | 5 |
found to be active | 5 |
are involved in a | 5 |
when it comes to | 5 |
the molecular mechanisms underlying | 5 |
similar to those reported | 5 |
very different from the | 5 |
a variety of cellular | 5 |
the same amino acid | 5 |
they are able to | 5 |
of the most effective | 5 |
all over the world | 5 |
of the s b | 5 |
to the binding site | 5 |
there is currently no | 5 |
in order to characterize | 5 |
as the starting point | 5 |
take place in the | 5 |
by their ability to | 5 |
as a measure of | 5 |
virtual screening of chemical | 5 |
analysis of the crystal | 5 |
less than sequence identity | 5 |
of isothermal titration calorimetry | 5 |
this study we present | 5 |
is the design of | 5 |
and the nature of | 5 |
simulations in order to | 5 |
one of the four | 5 |
in the electron microscope | 5 |
that the degree of | 5 |
electrostatic interactions between the | 5 |
of the double helix | 5 |
to distinguish between the | 5 |
in a loss of | 5 |
hydrogen bonding and stacking | 5 |
was observed for the | 5 |
reproduce crystal structures of | 5 |
as shown in table | 5 |
the beginning of the | 5 |
of this protein in | 5 |
drug discovery bassetto et | 5 |
with those of the | 5 |
the stiffness of the | 5 |
aim of our work | 5 |
activity of the peptides | 5 |
to the g protein | 5 |
peptides are able to | 5 |
from the structure of | 5 |
of unique structural folds | 5 |
for the detection and | 5 |
for most of the | 5 |
supported by the russian | 5 |
and is required for | 5 |
are used for the | 5 |
an indication of the | 5 |
the synthesis and the | 5 |
with the viral rna | 5 |
spatial distribution of the | 5 |
is located at the | 5 |
are known to have | 5 |
we designed a series | 5 |
must be able to | 5 |
one of which is | 5 |
investigate the influence of | 5 |
the total number of | 5 |
could be considered as | 5 |
of the binding partners | 5 |
energy and similarity score | 5 |
comparison of rna secondary | 5 |
is the presence of | 5 |
only a small number | 5 |
of these peptides are | 5 |
order to better understand | 5 |
the best results were | 5 |
using atomic force microscopy | 5 |
the entire sequence space | 5 |
function of the protein | 5 |
have been developed in | 5 |
we report the results | 5 |
in the last decades | 5 |
to a variety of | 5 |
ochratoxin a and b | 5 |
has been identified in | 5 |
studies have revealed that | 5 |
to understand the molecular | 5 |
the application of a | 5 |
because of their high | 5 |
crystal structure of sars | 5 |
a major challenge in | 5 |
to the membrane surface | 5 |
of the structure can | 5 |
to a range of | 5 |
for a large number | 5 |
the structure of griffithsin | 5 |
the structure analysis component | 5 |
the case of a | 5 |
a set of different | 5 |
their ability to inhibit | 5 |
em structure of human | 5 |
to be much more | 5 |
study revealed that the | 5 |
also been implicated in | 5 |
the biological activity and | 5 |
screened rutherford cross section | 5 |
the discovery of a | 5 |
is more stable than | 5 |
searching for drug design | 5 |
to further understand the | 5 |
for the interaction of | 5 |
the superposition of the | 5 |
target for the development | 5 |
the main components of | 5 |
there is an increasing | 5 |
a major limitation of | 5 |
and the design of | 5 |
of the interactions of | 5 |
powerful tool for the | 5 |
at different ph values | 5 |
each of the three | 5 |
present work we have | 5 |
of a lipid bilayer | 5 |
beyond the diffraction limit | 5 |
that the eudoc program | 5 |
and the determination of | 5 |
the catalytic cycle of | 5 |
the cyclic cystine knot | 5 |
their mechanism of action | 5 |