trigram

This is a table of type trigram and their frequencies. Use it to search & browse the list to learn more about your study carrel.

trigram frequency
porcine epidemic diarrhea145
epidemic diarrhea virus116
of porcine epidemic89
in this study87
based on the63
of canine parvovirus60
infectious bronchitis virus57
porcine epidemic diarrhoea56
the united states51
the presence of47
the s gene46
respiratory syndrome coronavirus44
of the disease44
article is protected42
is protected by42
this article is42
protected by copyright42
epidemic diarrhoea virus41
transbound emerg dis40
emerg dis doi40
all rights reserved40
middle east respiratory38
according to the38
of the virus38
in the united37
east respiratory syndrome37
phylogenetic analysis of37
of porcine deltacoronavirus37
as well as36
of a novel36
of the s36
a total of32
emergence of the32
in the s31
severe acute respiratory29
was used to29
acute respiratory syndrome28
was detected in27
diarrhea virus in27
the number of27
the spread of27
one of the27
due to the27
analysis of the26
wang et al26
at room temperature26
the end of26
transmissible gastroenteritis virus25
swine fever virus25
classical swine fever24
detected in the24
ihr core capacities24
the detection of24
bovine respiratory disease24
the positive control23
the s protein23
found to be23
were collected from23
the role of22
for min at22
the emergence of22
in our study22
genome sequence of21
of infectious bronchitis21
genetic characterization of20
rna was extracted20
in the same20
sequences of the20
end of the20
disease in belgium20
in south korea19
emergence in belgium19
observed in the19
porcine circovirus type19
reproductive and respiratory19
closely related to19
and characterization of19
and phylogenetic analysis19
bovine viral diarrhea19
associated with the19
a panel of18
canine parvovirus type18
in the usa18
in order to18
and respiratory syndrome18
analysis of porcine18
effect on the18
score score negligible18
compared with the18
the disease in18
porcine reproductive and18
as previously described18
the pathogen disease17
avian infectious bronchitis17
of pedv hljby17
woo et al17
and relative humidity17
shown in figure17
for the detection17
in the field17
porcine deltacoronavirus in17
s gene of17
as described previously17
molecular characterization of17
the phylogenetic tree17
indirect contact pigs17
the electronic microarray17
and avian coronaviruses16
gene source of16
to determine the16
as the gene16
li et al16
the spike protein16
was carried out16
viral diarrhea virus16
the development of16
influence on the16
on the pathogen16
b l e16
coronaviruses as the16
region of the16
the gene source16
genbank accession no16
for detection of16
no conflict of15
been reported in15
f i g15
legal imports of15
temperature and relative15
the s subunit15
bat coronavirus hku15
g u r15
complete genome sequence15
limit of detection15
and genetic characterization15
the absence of15
of this virus15
to investigate the15
as shown in15
u r e15
direct contact pigs15
the indel strain15
amino acid changes15
respiratory syndrome virus15
sensitivity of the15
the prevalence of15
all of the15
i g u15
of this study15
inactivated pdcov vaccine15
used in this14
n gene rrt14
were found to14
conflict of interest14
characterization of porcine14
evolutionary genetics analysis14
lee et al14
respiratory syncytial virus14
emerging infectious diseases14
compared to the14
the authors declare14
african swine fever14
piglets born to14
of porcine circovirus14
were observed in14
colostrum and milk14
characterization of a14
molecular evolutionary genetics14
respiratory disease in14
polymerase chain reaction14
the limit of13
for the non13
amino acid sequence13
song et al13
as a driver13
in saudi arabia13
rna was detected13
have been reported13
the amino acid13
the g b13
analysis of canine13
in southern china13
was extracted from13
to detect the13
of the covid13
porcine respiratory coronavirus13
pdcov strain nh13
were detected in13
was performed using13
born to immunized13
eu member states13
this study was13
the risk of12
the newly identified12
isolation and characterization12
for the disease12
in addition to12
of the complete12
of classical swine12
at the end12
the disease to12
this study are12
found in the12
of bovine respiratory12
was found to12
in tibetan pigs12
of the spike12
indicated that the12
was associated with12
and stored at12
results suggest that12
to immunized sows12
virus in the12
showed that the12
the porcine epidemic12
sequence identity was12
viral rna was12
inoculated with the11
of infectious disease11
room temperature and11
chen et al11
world health organization11
s genes of11
until the end11
due to a11
these results suggest11
samples that were11
of avian paramyxovirus11
samples were collected11
the first case11
shown to be11
analysis based on11
from third countries11
han et al11
of avian infectious11
the current study11
and evolution of11
associated with brd11
bovine respiratory syncytial11
a novel coronavirus11
the vp gene11
as described above11
the serum of11
regions of the11
the complete s11
were obtained from11
located in the11
related to the11
were used for10
imports of non10
the pedv strains10
responsible for the10
pcr assay for10
in the genus10
emergence of a10
newcastle disease virus10
were used to10
products such as10
there is a10
of animal subproducts10
such as skin10
of viral rna10
genetic diversity of10
evolution of canine10
animal subproducts such10
positive control group10
subproducts such as10
the incidence of10
coronavirus hku strain10
such as tires10
to be the10
the n gene10
headley et al10
imports of animal10
for s and10
changes in the10
is the first10
meat and edible10
analytical sensitivity of10
sequence of a10
prior to inoculation10
genes of porcine10
contribute to the10
the detection and10
of pedv strains10
this study were10
from eu member10
and edible products10
an outbreak of10
animal products such10
spread of the10
edible products from10
is associated with10
infectious disease agents10
zhou et al10
of the vp10
epidemic diarrhea viruses10
since the first10
amino acid sequences10
ma et al9
of the viral9
in china and9
approved by the9
molecular epidemiology of9
results showed that9
for the indel9
the negative control9
needs to be9
pedv hljby strain9
tree based on9
of pdcov in9
and control of9
transmission of sars9
of the porcine9
the importance of9
the disease has9
in the spike9
international health regulations9
characterization of canine9
in the positive9
diarrhea virus and9
followed by cycles9
canine parvovirus in9
pigs inoculated with9
of field samples9
were tested for9
emerge in belgium9
in the serum9
length genome sequence9
was added to9
isolated from a9
the use of9
influenza d virus9
collected from the9
to evaluate the9
because of the9
nucleic acid extraction9
epidemic diarrhea in9
zhang et al9
newly identified ibv9
of middle east9
the present study9
a and b9
faecal samples were9
to contain the9
g b strains9
in feedlot cattle9
of asian origin9
increase in the9
shown in table9
swabs were collected9
detection and phylogenetic9
on jeju island9
that can be9
the pedv s9
we did not9
the first week9
and amino acid9
detection of the9
of the strains9
of novel coronavirus9
nucleotide and amino9
decaro et al9
complete genome sequences9
ta b l9
of live animals9
the samples were9
characterization of the9
sequence of the9
carried out using9
agents associated with9
belongs to the9
the complete genome9
been shown to9
in the uk9
of the newly9
parvovirus type c8
the inactivated pdcov8
for animal health8
supports bat coronaviruses8
porcine deltacoronavirus strain8
the findings of8
in the vp8
for the presence8
this study and8
experimental infection of8
and betacoronavirus and8
alphacoronavirus and betacoronavirus8
genome sequences of8
on plastic surface8
of alphacoronavirus and8
the duration of8
in the faeces8
revealed that the8
it has been8
diagnostic ibv real8
in belgium score8
deltacoronavirus supports bat8
the spike gene8
betacoronavirus and avian8
information may be8
duan et al8
of the isolated8
validation of a8
additional supporting information8
avian coronaviruses as8
bat coronaviruses as8
discovery of seven8
mammalian and avian8
the analytical sensitivity8
summarized in table8
viruses associated with8
vp gene sequence8
accepted article this8
at dpi and8
were positive by8
serum samples from8
of vibrio vulnificus8
states have a8
countries have a8
gene sequences of8
third countries have8
to ll of8
and pathogenicity of8
that the virus8
three of the8
the occurrence of8
nucleotide sequences of8
source of gammacoronavirus8
the international health8
has a low8
acid sequence identity8
positive for pedv8
of gammacoronavirus and8
in another study8
signs of early8
of the experiment8
mouse hepatitis virus8
gammacoronavirus and deltacoronavirus8
multiple sequence alignment8
in vero cells8
presence of pedv8
case of covid8
this is the8
supporting information may8
source of alphacoronavirus8
strain of porcine8
detection of classical8
diarrhea virus strains8
most of the8
sequence analysis of8
seven novel mammalian8
with respect to8
emergence of porcine8
bacterial and viral8
in dairy calves8
temperature and humidity8
part of the8
identification of a8
some of the8
in the absence8
to identify the8
used in the8
tree was constructed8
may be found8
were performed using8
and transmissible gastroenteritis8
authors declare that8
canine distemper virus8
of seven novel8
in terms of8
were carried out8
samples collected from8
of the world8
world organisation for8
detection and genetic8
organisation for animal8
of the pedv8
in belgium is8
diarrhea virus infection8
cavanagh et al8
faecal samples from8
article this article8
porcine deltacoronavirus from8
nucleotide sequence identity8
in which the8
a driver for8
avian coronaviruses in8
member states have8
reported to be8
prevalence of pdcov8
hku strain hku8
strains of ibv8
world health organisation8
virus isolation and8
of early containment8
prevention and control8
human and animal8
novel mammalian and8
piglets in the8
of the sars7
primers and probes7
the diagnostic ibv7
pretto et al7
was found in7
currently circulating in7
the genus deltacoronavirus7
obtained from the7
authors declare no7
virus and porcine7
identical aa variant7
the supporting information7
strain of ibv7
virus infection in7
like bat covs7
at days post7
spread of covid7
of cpv strains7
zhuang et al7
a set of7
dong et al7
phylogenetic tree was7
was supported by7
ll of the7
in the eu7
of the three7
complete s genes7
the amount of7
new south wales7
were collected and7
united states of7
in cell culture7
the nucleotide and7
in the current7
the persistence of7
has been shown7
states of america7
identified ibv strains7
d virus in7
the relationship between7
this work was7
the middle east7
pcr and real7
data not shown7
identified in the7
from to dpi7
was extracted using7
and indirect contact7
of pulmonary disease7
in the following7
with diarrhoea in7
vp gene sequences7
clinical signs of7
in pigs in7
in mainland china7
coronaviruses in the7
carried out on7
in dairy cattle7
and the results7
and s genes7
international committee on7
were associated with7
first case of7
and the united7
has not been7
and phylogenetic analyses7
t a b7
the entire genome7
clinical signs were7
in europe and7
s gene sequences7
stevenson et al7
evolution of pedv7
at and dpi7
virus with a7
postcode of residence7
the s and7
the faeces of7
each of the7
the four target7
from the sdpp7
of the four7
were subjected to7
detection of a7
can be used7
of the positive7
samples from pigs7
in southern italy7
feline infectious peritonitis7
serum of piglets7
with diarrhea in7
bat cov b7
the causative agent7
included in the7
by virus isolation7
a b l7
associated with diarrhoea7
the indirect contact7
the diagnosis of7
respiratory tract of7
on taxonomy of7
committee on taxonomy7
viral and bacterial7
performed using the7
in the present7
taxonomy of viruses7
bronchitis virus in7
report of the7
the sequence of7
positive samples were7
and the amino7
a variety of7
to control the7
the possibility of7
used for the7
none of the7
mediated isothermal amplification7
the nucleotide sequence7
phylogenetic analysis based7
in swine in7
total rna was7
driver on the7
in suckling piglets7
of a new7
has a moderate7
sensitive and specific7
the level of7
the infectivity of7
of the two7
direct and indirect7
be linked to7
the international committee7
is one of7
retained its infectivity7
complete genome analysis7
was used for7
in the supporting7
pedv rna was7
and ll of7
the need for7
genetic analysis of7
the inoculated and7
of transmissible gastroenteritis6
per million population6
as a result6
associated with a6
of the infection6
phylogenetic tree based6
reserved this article6
saudi arabia and6
s gene rt6
characteristics of the6
transboundary and emerging6
for use in6
have a low6
be associated with6
s and n6
in korean swine6
for days and6
with an inactivated6
dairy calves in6
supported by the6
the onset of6
probes targeting the6
and porcine epidemic6
the results showed6
from the first6
at least one6
reported in the6
caused by a6
chang et al6
of the non6
r e phylogenetic6
species of animals6
spread of sars6
g for min6
horses in saudi6
detection of porcine6
genus deltacoronavirus supports6
incidence of cross6
hemagglutinating encephalomyelitis virus6
and detection of6
the genbank database6
to explore the6
an inactivated pdcov6
and in the6
the production of6
respiratory disease complex6
rights reserved this6
states porcine deltacoronavirus6
are known to6
in our experimental6
viral genomic sequences6
suggest that the6
in dairy cows6
farm in the6
of a disease6
sequence alignment editor6
s gene and6
contact piglets introduced6
with porcine epidemic6
negative for pedv6
economic losses to6
known to be6
pedv strains were6
in this work6
and emerging diseases6
of the first6
of the total6
as compared to6
ibv strains were6
demonstrated to be6
is present in6
the united kingdom6
and pathogenesis of6
protein genes of6
showed clinical signs6
european turkey coronavirus6
the molecular epidemiology6
acute diarrhoea syndrome6
specificity of the6
by cycles of6
of ihr core6
and antigenic characterization6
positive and negative6
pathogenic avian influenza6
the most frequent6
evolution of the6
to understand the6
role in the6
in the he6
using the same6
we found that6
of canine distemper6
were positive for6
of transmission of6
been detected in6
as a potential6
samples were positive6
detection of csfv6
genome characterization of6
vlasova et al6
negative control group6
online in the6
the evolution of6
are shown in6
sequencing of the6
there was a6
on the electronic6
number of criteria6
n and m6
genbank accession number6
the swine industry6
to be a6
arabia and oman6
is important to6
gene of pedv6
the orf ab6
vehicles of live6
genome analysis complete6
novel avian paramyxovirus6
diarrhea in swine6
the results of6
were selected for6
antigenic characterization of6
of min at6
the strain of6
humidity on the6
swine acute diarrhoea6
canine parvovirus strains6
t and t6
transport vehicles of6
genetics analysis version6
of the samples6
the internal control6
analysis complete genome6
united states porcine6
pedv n gene6
the nucleocapsid protein6
pan et al6
may be a6
the type of6
indicating that the6
which may be6
a moderate effect6
were negative for6
with the other6
the he gene6
examined at dpi6
confirmed cases and6
molecular epidemiology and6
complete genomes of6
to amplify the6
machine learning models6
the index case6
early signs of6
for min and6
acid changes in6
simultaneous detection of6
analysis of a6
confirmed case of6
influenza a virus6
and s gene6
humblet et al6
the indel and6
mutation in the6
indicate that the6
in the south6
the sequence data6
identification of the6
of the pdcov6
the direct contact6
were identified as6
the zero case6
n and s6
the first report6
for at least6
our experimental conditions6
would like to6
the virus in6
from pigs inoculated6
strains of asian6
swine in china6
the whole genome6
the novel coronavirus6
the gii genogroup6
samples were tested6
study of the6
parts of the6
phylogenetic tree of6
genome sequence analysis6
findings of this6
were asked to6
results indicated that6
were determined by6
different species of6
grecco et al6
pigs infected with6
are summarized in6
moderate effect on6
determined to be6
strain hku hk6
with the indel6
sequence of porcine6
of the most6
with bovine respiratory6
be found online6
s protein and6
korean swine farms6
found that the6
outbreak of porcine6
in group a6
and viral genomic6
of the trial6
nucleic acid analyzer6
were similar to6
old spf turkeys6
there is no6
of ibv present6
diarrhoea in swine6
used as a6
found online in6
an internal control6
gong et al6
was determined to6
except for the6
detection of canine6
used as the6
using the neighbour6
considered to be6
oral and nasal6
global health security6
animals in the6
has a high6
serum samples were6
a review of6
well as the5
gershwin et al5
a driver on5
has been found5
relative humidity was5
characterization of deltacoronavirus5
acid sequences of5
isolation of a5
the clinical signs5
assay for the5
by reverse transcription5
the aim of5
well as a5
a member of5
found to have5
electronic microarray assay5
variants of porcine5
the usa and5
amplification of the5
to be distributed5
to the family5
first report of5
more sensitive than5
were analysed using5
of s at5
and sequenced in5
samples from the5
high levels of5
a highly contagious5
the data that5
week after inoculation5
coronavirus spike protein5
of the tree5
added to the5
members of the5
reference laboratory for5
of molecular epidemiology5
isolated in the5
highly sensitive and5
simultaneous detection and5
for a disease5
the results obtained5
was confirmed by5
resources allocated to5
open reading frame5
increased imports of5
of biosecurity measures5
of the contact5
upper respiratory tract5
the family coronaviridae5
and identification of5
a high influence5
are available on5
development and validation5
sequences of pedv5
positive immunoreactivity to5
the efficacy of5
martino et al5
avian paramyxovirus type5
in the environment5
similar to the5
has also been5
and centrifuged at5
close to the5
the objective of5
isolates were determined5
s subunit of5
in a single5
protective efficacy of5
park et al5
close contact with5
has been suggested5
in the laboratory5
variant of porcine5
outbreaks in south5
the state of5
sequences were assembled5
in adult dairy5
chin et al5
a phylogenetic tree5
of porcine deltacoronaviruses5
clinical diarrhoeal disease5
sequenced in both5
also detected in5
across the world5
of lockdown days5
the houhai acupoint5
most closely related5
products from eu5
to better understand5
of the united5
mai et al5
lin et al5
furniture from eu5
in table s5
the effect of5
the implementation of5
furniture from third5
of the piglets5
was included in5
of infectious diseases5
the significance of5
for multiple sequence5
at least six5
antibodies were detected5
intermediate hosts of5
department of agriculture5
in the us5
associated with diarrhea5
g b and5
thomas et al5
positive control and5
maurel et al5
animal care and5
newly emerged porcine5
analysis revealed that5
belonged to the5
aerosol transmission of5
the sequences of5
genetic diversity and5
tm nucleic acid5
bcov s genes5
the sdpp group5
a value of5
be used for5
virus isolates from5
in hubei province5
of ibv strains5
transmission of the5
the prevalence and5
data analysis and5
using the diagnostic5
tortorelli et al5
feed as a5
to assess the5
sequence alignments and5
horizontal transmission of5
in the sdpp5
as early as5
a disease to5
coronavirus spike proteins5
in new south5
and a final5
associated with prdc5
stability of sars5
products from third5
pockit tm nucleic5
has been reported5
epidemiological investigation of5
available in the5
a final extension5
a number of5
calves in china5
similar to those5
in the study5
is a newly5
of these viruses5
the colostrum and5
an identical aa5
of porcine kobuvirus5
for up to5
used to detect5
virus isolation was5
forward and reverse5
chan et al5
the stability of5
and differentiation of5
any of the5
the complete genomes5
sequences in this5
overlapping cdna fragments5
of the food5
novel coronavirus in5
the rna was5
the nodes of5
pedv reference strain5
decayed completely after5
coronavirus infection in5
ranging from to5
between the two5
pathogenicity of porcine5
sl and sl5
van den brand5
in hong kong5
the positive samples5
the vp protein5
the entire s5
study was to5
duration of the5
bande et al5
porcine hemagglutinating encephalomyelitis5
and na responses5
persistence of sars5
occurred in the5
phylogenetic trees were5
at dpi from5
swine enteric coronavirus5
circulating in the5
first reported in5
of the sequence5
have also been5
with previous studies5
pedv and tgev5
is consistent with5
new variants of5
porcine deltacoronavirus associated5
pigs showed clinical5
of the assay5
of the study5
cite this article5
old neonatal piglets5
agents of brd5
and analysis of5
the pathogenicity of5
of the real5
allocated to the5
support the findings5
human coronavirus e5
deltacoronavirus in pigs5
strains in this5
in field samples5
to the implementation5
doremalen et al5
in the genbank5
to cite this5
the tour group5
how to cite5
appears to be5
to be negative5
the tree was5
caused by the5
the gi genogroup5
pcr for the5
virus in cattle5
have shown that5
the fact that5
infection was determined5
assay for detection5
idte in the5
most likely influence5
and wild animals5
a newly discovered5
the lamina propria5
losses in the5
viral rna copies5
the highest nucleotide5
s protein of5
detection and differentiation5
from guangdong province5
prevalence and full5
significant role in5
diarrhea virus strain5
spike gene of5
human coronavirus oc5
geng et al5
del in the5
c t of5
contain the infection5
incubated for min5
cases of covid5
be due to5
the disease pathogen5
understanding of the5
swine influenza virus5
complete genome of5
serial dilutions of5
entire s gene5
spike protein genes5
the ability of5
virus isolation in5
chinese academy of5
other pedv strains5
results indicate that5
were submitted to5
health care infrastructure5
of deltacoronavirus in5
threat to marine5
virus in china5
associated with porcine5
pedv s protein5
have been identified5
in china date5
of brd in5
of severe acute5
patterns of pulmonary5
investigation of the5
data that support5
confirmed by sequencing5
large number of5
shang et al5
gene of canine5
epidemiology of pedv5
from other countries5
conducted in the5
in south america5
b porcine epidemic5
nodes of the5
first detected in5
low effect on5
isolated from wild5
with the exception5
for antibodies to5
in figure a5
days since the5
it was first5
sequences using the5
to confirm the5
that support the5
a prevalence of5
centrifuged for min5
likely influence of5
and public health5
vibrio vulnificus in5
tested for the5
from january to5
of igg antibodies5
sequence data generated5
the exception of5
of detection of5
influenza a viruses5
aim of this5
insulated isothermal pcr5
and the other5
signs of containment5
and validation of5
determination of the5
of the coronavirus5
and the spread5
compared with other5
the nucleic acid5
to obtain results5
during this investigation5
of the phylogeny5
in both the5
a low effect5
rna was then5
of a real5
in a pig5
by the institutional5
wild birds in5
di martino et5
linked to the5
deltacoronavirus associated with5
from south korea5
of coronaviruses in5
may be more5
the sensitivity of5
conflicts of interest5
contributed to the5
based on a5
there are no5
for the s5
emerged porcine deltacoronavirus5
were most closely5
the dependent variable5
implementation of biosecurity5
of the ihr5
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current understanding about4
diarrhea viruses isolated4
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the basis of4
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the genetic characterization4
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on the pedv3
biosecurity measures has3
studies on the3
and three of3
panel of strains3
in european countries3
severe and often3
and respiratory diseases3
correlated with the3
fast and effective3
virus detection of3
common risk factor3
hljby strain and3
genes of sads3
of a recent3
migrating wild birds3
has rapidly spread3
type and type3
was determined by3
known to cause3
from a single3
the mortality rate3
were collected at3
used to test3
pair of primers3
values were found3
level of viral3
other chinese bcov3
amino acid levels3
cases have been3
and compared with3