quadgram

This is a table of type quadgram and their frequencies. Use it to search & browse the list to learn more about your study carrel.

quadgram	frequency
copyright holder for this	1337
is the author funder	1337
the copyright holder for	1337
certified by peer review	1328
was not certified by	1259
which was not certified	1259
not certified by peer	1250
holder for this preprintthis	1250
for this preprintthis version	1250
preprintthis version posted january	1250
this preprintthis version posted	1250
com b m kdl	887
the preprint in perpetuity	877
who has granted biorxiv	877
granted biorxiv a license	877
to display the preprint	877
display the preprint in	877
has granted biorxiv a	877
biorxiv a license to	877
a license to display	877
license to display the	877
no reuse allowed without	448
reuse allowed without permission	448
international licenseavailable under a	435
it is made the	435
is made the copyright	435
made the copyright holder	435
international licensemade available under	355
it is the copyright	355
licensemade available under a	355
is the copyright holder	355
com b h ctd	265
b m kdl qaa	106
m kdl qaa http	106
com b m zzqk	101
b m kdl gtt	92
m kdl gtt http	91
m kdl jg a	89
holder for this preprint	87
is made available under	87
it is made available	87
kdl jg a http	84
b m kdl jg	84
was notthis version posted	78
which was notthis version	78
made available under the	78
international licensea certified by	78
available under the copyright	78
licensea certified by peer	78
under the copyright holder	78
notthis version posted january	78
com c h ctd	75
m kdl lmi h	75
b m kdl lmi	74
kdl lmi h http	74
b m kdl bijvc	70
m kdl bijvc http	70
i i i i	69
b m kdl vecw	67
m kdl vecw http	67
b m kdl ahwg	64
m kdl ahwg http	64
b m kdl udus	57
m kdl udus http	57
m kdl wfrst http	56
b m kdl wfrst	56
m kdl xp y	56
m kdl sj we	54
b m kdl xp	52
b m kdl sj	52
kdl sj we http	52
kdl xp y http	52
b m kdl isag	49
m kdl isag http	49
ta t re l	45
ps ta t re	45
the mammalian methylation array	44
can be used to	37
data was obtained from	35
for m enrich seq	35
the total number of	33
m o i ifnl	32
m kdl vjim http	32
b m kdl vjim	32
on the other hand	31
h h h h	28
with hbv integration sequences	27
min ps ta t	27
in the context of	26
time min ps ta	26
com c m zzqk	25
m o i m	25
with each two technical	25
each two technical replicates	25
thiamine c h o	23
com c m kdl	23
i m o i	22
o i m o	22
deephbv with hbv integration	22
in the case of	22
electronic health care records	21
as well as the	21
for each of the	21
with respect to the	21
is the number of	20
r ef s eq	20
the number of mismatches	20
of stat and stat	20
b m kdl xpakk	20
a wide range of	20
ta t r el	19
journal of statistical software	19
m kdl xpakk http	19
of downstream sequence to	19
to the number of	18
the size of the	18
and the number of	18
of the edited cytidine	18
com storage browser brain	18
m fi ps ta	17
a b c d	17
fi ps ta t	17
ta bl et s	17
prescriptions in electronic health	17
after stimulation with il	17
in electronic health care	17
ps ta t r	17
drug prescriptions in electronic	17
m fi time min	16
m g ta bl	16
g ta bl et	16
com work bibliography http	16
were obtained from the	16
p a tie n	16
a large number of	16
enrich seq rienrich seq	15
natl acad sci u	15
this work was supported	15
an r package for	15
the expression levels of	15
the scalar curvature of	15
acad sci u s	15
e a lth y	15
sci u s a	15
polya selection gse sars	15
h e a lth	15
b h ctd n	15
used in this study	15
m enrich seq rienrich	15
analysing drug prescriptions in	15
severe acute respiratory syndrome	15
on the basis of	14
a tie n t	14
to be associated with	14
work was supported by	14
to two molecules of	14
bound to two molecules	14
is available at https	14
in terms of the	14
the second fundamental form	14
proc natl acad sci	14
the performance of the	14
dimer bound to two	14
and galiez et al	14
p r s s	13
most frequently recurring genes	13
mock mock mock h	13
to the most frequently	13
o i ifnl sars	13
the extent to which	13
was obtained from three	13
and columns represent cancer	13
gse mock mock mock	13
the length of the	13
columns represent cancer types	13
of the predicted atus	13
l c x c	13
of the number of	13
can be found in	13
c x c l	13
c l c x	13
m enrich seq and	13
i i i preprint	13
tm p r s	13
correspond to the most	13
m kdl m hq	13
the most frequently recurring	13
is one of the	13
made available for use	12
u mrna editing sites	12
y s stat p	12
also made available for	12
in the number of	12
a us government work	12
replicates with each two	12
is a us government	12
use under a cc	12
mock mock h homo	12
this article is a	12
under a cc license	12
is also made available	12
was supported by the	12
mock h homo sapiens	12
under usc the copyright	12
b m kdl m	12
general classification general ccn	12
human bronchial epithelial cells	12
available for use under	12
subject to copyright under	12
based on perfect matching	12
copyright under usc the	12
is not subject to	12
x c l c	12
for use under a	12
we found that the	12
classification general ccn score	12
rows correspond to the	12
to copyright under usc	12
x x x x	12
biological replicates with each	12
usc the copyright holder	12
it is not subject	12
b c d e	12
article is a us	12
and is also made	12
not subject to copyright	12
as a function of	11
as shown in figure	11
valid read pairs per	11
log nm ps ta	11
kdl m hq http	11
polya selection gse mock	11
the sum of the	11
association of editing frequency	11
cells infected with sars	11
the accuracy of the	11
number of mismatches for	11
latex r e https	11
p v al u	11
university school of medicine	11
of editing frequency with	11
selection gse mock mock	11
phage and host sequences	11
log p v al	11
nm ps ta t	11
scalar curvatures computed for	11
v al u e	11
b h ctd q	10
the structure of the	10
heterotypic and homotypic multiplets	10
t h t h	10
the overlapping cell lines	10
the true value of	10
end genes of the	10
dimer bound to stat	10
the global length scale	10
change of three biological	10
the gene expression profile	10
sequences tcga pan cancer	10
k valid read pairs	10
the number of species	10
su br ea d	10
at the same time	10
n ai ve c	10
two molecules of stat	10
the two refseq annotations	10
of three biological replicates	10
from three biological replicates	10
public research allele frequency	10
the number of cells	10
obtained from three biological	10
ai ve c d	10
as part of the	10
e ns em bl	10
acute respiratory syndrome coronavirus	10
fold change of three	10
may be due to	10
of the cell types	10
as shown in the	10
it is possible to	10
gene was annotated by	9
national academy of sciences	9
ai c index https	9
we were able to	9
as a driver within	9
expression levels of the	9
journal of vegetation science	9
within cells indicate that	9
chasmplus as a driver	9
primary human bronchial epithelial	9
available under a the	9
it can be seen	9
on the mammalian methylation	9
fi time min ps	9
b h ctd k	9
of the cell lines	9
sequence to per unit	9
genes of the predicted	9
cells indicate that the	9
b bnwyax odthp http	9
downstream sequence to per	9
number of valid read	9
driver within a given	9
vs r ef s	9
was obtained from two	9
for each cell line	9
of the national academy	9
within a given tcga	9
a given tcga cohort	9
a ci containing the	9
p b m c	9
for the analysis of	9
b a l f	9
with at least one	9
marks within cells indicate	9
annotated by chasmplus as	9
n points uniformly sampled	9
the number of cell	9
fold induction log p	9
seq and rienrich seq	9
contributed equally to this	9
red marks within cells	9
all eur amr sas	9
predicted atus by seqatu	9
hbv integration sequences tcga	9
peerthis version posted january	9
of each cell type	9
equally to this work	9
see figure s a	9
t p m ifnl	9
ranked by fraction of	9
eur amr sas afr	9
by fraction of samples	9
amr sas afr eas	9
for each cell type	9
can be seen from	9
integration sequences tcga pan	9
the number of reads	9
downstream of the edited	9
enrich seq and rienrich	9
the national academy of	9
induction log p v	9
l u n g	9
points uniformly sampled from	9
by chasmplus as a	9
in addition to the	9
a the copyright holder	9
peripheral blood mononuclear cells	9
certified by peerthis version	9
a driver within a	9
to per unit increments	9
in health and disease	9
of valid read pairs	9
not certified by peerthis	9
com b bnwyax odthp	9
n h b e	9
by the number of	9
nodes u and v	9
made available under a	9
under a the copyright	9
was annotated by chasmplus	9
it is important to	9
theory of resistant biomolecules	9
by peerthis version posted	9
the theory of resistant	9
com b bnwyax bifqg	8
the gene was annotated	8
bnwyax hbt j http	8
ac e c ac	8
m o i ifnb	8
m zzqk q l	8
bound to stat via	8
that the gene was	8
com b bnwyax thhr	8
bnwyax q esm http	8
b bnwyax wm a	8
the single cell data	8
h homo sapiens a	8
ir f ir f	8
the number of items	8
bnwyax wm a http	8
b bnwyax thhr http	8
com b bnwyax q	8
kgp cohort dv glnexus	8
genes were found to	8
the five cancer types	8
the expression value of	8
com b bnwyax z	8
and amino acid continuous	8
sample sample sample sample	8
h ctd ndo a	8
node and edge annotation	8
c c l c	8
area under the curve	8
b bnwyax ezh http	8
authors contributed equally to	8
b bnwyax hbt j	8
the fraction of samples	8
bnwyax z a http	8
b bnwyax uh g	8
in the human population	8
both homotypic and heterotypic	8
com b bnwyax kxhhl	8
b bnwyax dctjj http	8
r c n h	8
dv glnexus opt v	8
unknown general classification general	8
curvatures computed for the	8
on the mammalian array	8
com b bnwyax uh	8
bnwyax g buj http	8
com b bnwyax karn	8
by deepmm and phenix	8
ve ro e lo	8
of gene expression in	8
com b bnwyax g	8
ranked by binomial p	8
the first and last	8
is defined as the	8
b bnwyax assl http	8
b bnwyax bifqg http	8
b bnwyax o i	8
in ecology and evolution	8
bnwyax o i http	8
can be used for	8
dimer bound to pstat	8
public research cohort kgp	8
of deephbv with hbv	8
b bnwyax eqqvf http	8
b bnwyax ayqe http	8
h homo sapiens calu	8
e c ac o	8
of the integrated datasets	8
b bnwyax q esm	8
n c b i	8
cohort kgp cohort dv	8
com b bnwyax ayqe	8
b bnwyax wfsum http	8
com b bnwyax iqbee	8
satellite glia and endothelial	8
from this dataset we	8
can be used as	8
were found to be	8
al u h m	8
in this study are	8
com b bnwyax ezh	8
com b bnwyax wm	8
tl r tl r	8
the relationship between the	8
e ve ro e	8
b bnwyax z a	8
c al u h	8
u h m r	8
c n h b	8
c ac o c	8
l l in es	8
the same number of	8
number of cell lines	8
com b bnwyax dctjj	8
proceedings of the national	8
ro e lo g	8
h m r c	8
the maximum number of	8
b bnwyax e ooj	8
the number of classifications	8
one of the most	8
b bnwyax iqbee http	8
b bnwyax g buj	8
ac o c al	8
com b bnwyax e	8
b e ve ro	8
el l l in	8
indicate that the gene	8
com b bnwyax shsw	8
genomic and transcriptomic data	8
com b bnwyax hbt	8
correlation with environmental distance	8
com b bnwyax o	8
research cohort kgp cohort	8
the image patch dataset	8
b bnwyax shsw http	8
for the original dataset	8
and the proportion of	8
studies have shown that	8
bnwyax e ooj http	8
b bnwyax kxhhl http	8
m r c n	8
o c al u	8
bnwyax uh g http	8
h b e ve	8
this dataset we downloaded	8
com b bnwyax eqqvf	8
compared with reshuffled controls	8
cohort dv glnexus opt	8
be seen from the	8
com b bnwyax assl	8
com b bnwyax wfsum	8
c el l l	8
the performance of sclapa	8
cancer cell line encyclopedia	8
the broad and sanger	7
allele frequency pretrained model	7
uniform read distribution along	7
included in this study	7
from the figure that	7
matching for m enrich	7
quadruplex and triplex motifs	7
ld c ha ng	7
b bnwyax ymsj http	7
is the set of	7
homotypic and heterotypic multiplets	7
not present in the	7
in the other dataset	7
b bnwyax karn http	7
with the number of	7
h ctd jlne http	7
used to evaluate the	7
recurrently disrupted by variants	7
the expression level of	7
of common essential genes	7
for recurrently disrupted genes	7
b bnwyax jkgi http	7
major cell type clusters	7
h ctd s lm	7
is consistent with the	7
be found in the	7
genome atlas research network	7
r tl r tl	7
of machine learning research	7
b bnwyax htdux http	7
that the use of	7
these authors contributed equally	7
of a klein bottle	7
of gene expression and	7
in response to il	7
reveals genes recurrently disrupted	7
of a stop codon	7
data represents the mean	7
h ctd k rob	7
recurrently disrupted genes in	7
than the decision threshold	7
com b bnwyax jkgi	7
was obtained from one	7
of which have been	7
com b bnwyax htdux	7
y stat a p	7
disrupted genes in each	7
national institutes of health	7
seen from the figure	7
the average mutual information	7
bnwyax ax xh http	7
four out of five	7
supported by the national	7
results of analysis for	7
research allele frequency pretrained	7
in regulatory sequence motif	7
distribution of gof p	7
predicting response to chemotherapy	7
of analysis for recurrently	7
fo ld c ha	7
are in supp tab	7
the start of the	7
genes recurrently disrupted by	7
h ctd eix e	7
ge ne le ng	7
b bnwyax ax xh	7
h ctd pj xm	7
the authors declare no	7
normalized to maximal il	7
are provided in supplementary	7
com b bnwyax dwirj	7
a limited number of	7
the presence of a	7
o i tp m	7
time min time min	7
on the same date	7
e ge ne le	7
disrupted by variants which	7
b m zzqk q	7
of mismatches for each	7
m zzqk xjeg http	7
in the r package	7
of the royal society	7
r s s tm	7
for predicting response to	7
compared the performance of	7
mismatches in regulatory sequence	7
m zzqk at m	7
read distribution along mrna	7
com b bnwyax as	7
mismatches in mooring sequence	7
zzqk q l http	7
b bnwyax dwirj http	7
number of mismatches in	7
b m zzqk xjeg	7
of the mooring sequence	7
na na na na	7
an exon skipping event	7
data was normalized to	7
the percentage of the	7
distribution along mrna transcripts	7
ct iv e ge	7
the edwards et al	7
probability of severe illness	7
fi c log nm	7
s c o re	7
mean and standard deviation	7
ub cl on al	7
or infected with sars	7
oligonucleotide compositions of sars	7
m o i tp	7
small cell lung cancer	7
of effective gene lengths	7
each pair of annotations	7
the number of sequences	7
washington university school of	7
analysis for recurrently disrupted	7
b bnwyax as lx	7
s tm p r	7
a stop codon when	7
are shown in table	7
prediction accuracy of phirbo	7
by the two cytokines	7
iv e ge ne	7
association with editing frequency	7
b h ctd jlne	7
from left to right	7
h ctd crk v	7
s ub cl on	7
bnwyax as lx http	7
the quality of the	7
l c c l	7
m zzqk n pa	7
c ha ng e	7
com b bnwyax fenjn	7
cancer type of interest	7
ne le ng th	7
m fi c log	7
s s tm p	7
c l c c	7
as a measure of	7
stat activation by il	7
com b bnwyax ymsj	7
cells stimulated with il	7
location of the edited	7
at the end of	7
as ranked by fraction	7
in the analysis of	7
for a total of	7
f ir f ir	7
t t t t	7
com b bnwyax ax	7
cancer genome atlas research	7
provided in supplementary table	7
the true scalar curvature	6
upstream and nucleotides downstream	6
for islet and islet	6
the department of automation	6
b m zzqk meu	6
and balf samples of	6
b m zzqk qisc	6
have been proposed to	6
genetically engineered mouse models	6
gender prop gender gender	6
and an aupr of	6
levels of the top	6
ami gender ami gender	6
of maximal atu clusters	6
interests the authors declare	6
h ctd hn t	6
experiment with each two	6
the single cell reference	6
ef fe ct iv	6
h ctd jqzsb http	6
using the default splice	6
ri ty s c	6
the number of samples	6
corresponds to the fraction	6
of hbv integration sites	6
with an exon skipping	6
been shown to be	6
apolipoprotein b mrna editing	6
for pbmc and pbmc	6
of points in the	6
shown in figure b	6
p s ta t	6
gu la te d	6
acid and secondary structure	6
prediction of response to	6
profiling of gene expression	6
the end of the	6
c h n o	6
of deletion bps associated	6
from one representative experiment	6
shading corresponds to the	6
shown as a dashed	6
m zzqk c cd	6
ila ri ty s	6
the location of the	6
b m zzqk at	6
b bnwyax zwnw http	6
ctd n kax http	6
the human reference genome	6
com b bnwyax rxwn	6
the use of refseq	6
com b bnwyax xh	6
expression levels of ifns	6
b h ctd crk	6
the edited cytidine in	6
ta t m fi	6
representative experiment with each	6
nucleotides upstream and nucleotides	6
based on relaxed matching	6
demonstrate the utility of	6
the human epic array	6
chlorocebus sabaeus vero e	6
m al e c	6
h ctd str http	6
n co ef fic	6
was calculated using the	6
m zzqk njch http	6
at an moi of	6
al iz at io	6
indicated on the x	6
nsclc cell lines and	6
the cancer cell line	6
closest point on k	6
the formula difference of	6
stably expressing wt il	6
tio n co ef	6
h ctd t pi	6
b h ctd str	6
r su br ea	6
a scatter plot showing	6
u p re gu	6
cell lines and n	6
shows the number of	6
j chem inf model	6
the computed scalar curvatures	6
zzqk at m http	6
b h ctd yrlys	6
phosphorylated stat and stat	6
an important role in	6
of regulatory sequence motif	6
the national institutes of	6
we focused on the	6
b h ctd cclhp	6
be due to the	6
ctd s lm http	6
validated by experimental tsss	6
the number of deletion	6
identify genes that are	6
com b bnwyax t	6
number of deletion bps	6
to identify genes that	6
obtained from one representative	6
d iff er en	6
control sirna irf sirna	6
smrt m enrich and	6
im ila ri ty	6
hbv integration sequences repeat	6
com c bnwyax qc	6
in the training data	6
ranked by their alignment	6
as ranked by binomial	6
can also be used	6
m zzqk iwwe http	6
b m zzqk iwwe	6
in cell type k	6
b m zzqk ifm	6
to the fraction of	6
this result was found	6
regulatory sequence motif b	6
would like to thank	6
la tio n co	6
than or equal to	6
was performed using the	6
of automation in xiamen	6
due to differences in	6
samples and columns represent	6
making use of the	6
re gu la te	6
dissimilarity and environmental distance	6
ns em bl vs	6
b bnwyax rxwn http	6
com b bnwyax zwnw	6
whom correspondence should be	6
c o re interaction	6
host prediction accuracy of	6
results are shown in	6
for four out of	6
the bias rate of	6
in vitro and in	6
models built by deepmm	6
and scnn g in	6
m zzqk ifm http	6
were extracted from the	6
cancer type specific grn	6
surrounding the edited cytidine	6
mock treated or infected	6
is the total number	6
no rm al iz	6
c log nm ps	6
fe ct iv e	6
m zzqk uwiz http	6
result was found using	6
probes on the array	6
gender ami gender gender	6
competing interests the authors	6
y f y f	6
h chlorocebus sabaeus vero	6
splice variant window parameter	6
funding this work was	6
h ctd pgh u	6
g ef fe ct	6
r m s d	6
and nucleotides downstream of	6
bl vs r ef	6
default splice variant window	6
the ms use case	6
m zzqk ld http	6
in contrast to the	6
that can be used	6
la te d in	6
p re gu la	6
h ctd cq b	6
in male and female	6
in du ct io	6
bnwyax xh a http	6
the ucsc genome browser	6
sas afr eas v	6
in the ambient space	6
m enrich and smrt	6
cell types in the	6
that are associated with	6
com science article pii	6
b bnwyax xh a	6
the expected number of	6
h ctd r by	6
treated or infected with	6
out of five cancer	6
described in methods section	6
bnwyax t woi http	6
m zzqk meu http	6
as the number of	6
tcga pan cancer peaks	6
department of automation in	6
h ctd lyx d	6
co ef fic ie	6
b m zzqk n	6
parent ngsc di pbmc	6
annotated by the cgc	6
the amino acid sequence	6
experiments with each two	6
h ctd n kax	6
average power plot and	6
our results suggest that	6
line in figure s	6
the default splice variant	6
for the image patches	6
accuracy of the model	6
of response to chemotherapy	6
zzqk n pa http	6
parameters for curvature estimation	6
prop gender prop gender	6
deletion bps associated with	6
b h ctd ndo	6
one representative experiment with	6
h ctd gyl http	6
b m zzqk ld	6
b m zzqk njch	6
of five cancer types	6
m m m m	6
gov pmc articles pmc	6
of samples and columns	6
by blast and phirbo	6
ctd crk v http	6
we have developed a	6
cpgs on the mammalian	6
em bl vs r	6
correspondence should be addressed	6
a web server for	6
m zzqk qisc http	6
bound to pstat via	6
h ctd k ci	6
was found using the	6
favorable interactions with the	6
and thiamine c h	6
b h ctd s	6
science article pii s	6
al e c el	6
h ctd q kl	6
h ctd n ru	6
b h ctd gyl	6
fraction of samples and	6
c d e f	6
using the r package	6
the number of genomes	6
c or re la	6
in figure s a	6
lo g ef fe	6
re la tio n	6
b bnwyax fenjn http	6
run run run run	6
found using the default	6
es se nt ia	6
iz at io n	6
a tumor suppressor gene	6
ctd ndo a http	6
with hbv integration sites	6
by at least one	6
the raw fastq data	6
b bnwyax t woi	6
u m a p	6
or re la tio	6
b m zzqk uwiz	6
does not depend on	6
b h ctd jqzsb	6
mutant nsclc cell lines	6
e st im at	6
the fraction of the	6
hidden subpopulations of cells	6
o re interaction non	6
with the department of	6
and standard deviation of	6
amino acid and secondary	6
used by blast and	6
single gene mrna transcripts	6
ty s c o	6
the number of patients	6
rm al iz at	6
average number of mismatches	6
ef fic ie nt	6
found to have a	6
of the image patches	6
s im ila ri	6
based on the digraph	6
in the human genome	6
were excluded from the	6
enrich and smrt rienrich	6
of triplex motifs in	6
automation in xiamen university	6
c j i pi	6
journal of machine learning	6
du ct io n	6
e c el l	6
tablet oral mg tablet	5
lzg m j vw	5
g t p m	5
h ctd uke r	5
a higher proportion of	5
b h ctd b	5
that are present in	5
as shown in fig	5
to the virus genome	5
relatively flat average mutual	5
score higher than the	5
the cancer genome atlas	5
apa isoforms and genes	5
by whether they were	5
we compared the performance	5
the receiver operating characteristic	5
b m zzqk sfn	5
optimum expression combination of	5
sapiens calu polya selection	5
the ensembl annotation contains	5
n g t p	5
c d t h	5
h ctd lmbav http	5
were annotated by the	5
posterior distributions for the	5
b m zzqk nhfw	5
have been shown to	5
h ctd gwpe http	5
h ctd cclhp http	5
the difference between the	5
we uniformly sampled n	5
b h ctd wqpb	5
are conditionally essential in	5
it is known that	5
b h ctd qanj	5
the posterior distributions for	5
as described in the	5
and secondary structure types	5
greater than that of	5
were downloaded from the	5
classifier when applied to	5
the number of predicted	5
we did not observe	5
using the giab v	5
regulatory sequence motif d	5
are plotted against the	5
y nu m be	5
b h ctd me	5
cgc as an oncogene	5
h ctd wqpb http	5
m o i ve	5
vero e polya selection	5
it is necessary to	5
l n k m	5
the scalar curvature is	5
for the pbmc dataset	5
b h ctd lmbav	5
the number of genes	5
and phase difference image	5
c m kdl jg	5
which have been contained	5
our results show that	5
belonging to the same	5
were mock treated or	5
each of the three	5
are more likely to	5
nucleotides surrounding the edited	5
venlafaxine propranolol lisinopril atenolol	5
m as t b	5
o i ve ro	5
are present in the	5
ctd k rob http	5
the average silhouette width	5
an oncogene and tumor	5
b h ctd rpd	5
was normalized to maximal	5
in accordance with the	5
of data and materials	5
b h ctd pj	5
homo sapiens mrc polya	5
dependent changes in the	5
between interacting and non	5
ctd n ru http	5
the predicted atus by	5
c op y nu	5
was obtained from five	5
homo sapiens calu polya	5
for each of these	5
an open source repository	5
the institute of origin	5
ctd t pi http	5
k m as t	5
h ctd p a	5
mg tablet oral mg	5
the bias rate function	5
between major cell type	5
h t h t	5
acute respiratory distress syndrome	5
h ctd dguv http	5
the full set of	5
top most variable genes	5
multivariable linear regression model	5
ctd q ll http	5
the basis of the	5
with cis containing the	5
ube l gbp stat	5
between each pair of	5
between triplex motifs and	5
mrc polya selection gse	5
ctd pgh u http	5
be used to identify	5
by experimental tsss or	5
play a role in	5
barcode and metabarcode data	5
numbers of new infections	5
kinetics of gene induction	5
return plots in dimensions	5
authors declare no competing	5
the decision threshold in	5
b bnwyax votga http	5
stop codon when translated	5
at the functional genomics	5
h ctd pjd http	5
fo ld in du	5
by the cmaps algorithm	5
m e o si	5
can be applied to	5
h ctd oc w	5
h ctd xl http	5
for n points uniformly	5
cis containing the scalar	5
models and bayesian inference	5
m d m e	5
impact of gene annotation	5
m zzqk nhfw http	5
epigenomics consortium et al	5
the cgc as an	5
genes that are upregulated	5
u rna editing targets	5
b h ctd gwpe	5
as indicated by the	5
were included in the	5
with a length of	5
in the single cell	5
h ctd qanj http	5
b m zzqk srq	5
is supported by the	5
in this study we	5
fluctuations of various durations	5
b h ctd jzbjy	5
balf samples of covid	5
b h ctd eix	5
of ifns and isgs	5
io n time h	5
ctd cq b http	5
flat average mutual information	5
reported to be associated	5
learning association for single	5
we would like to	5
b h ctd hn	5
a maximal atu cluster	5
b h ctd jzyin	5
be used to detect	5
the context of a	5
ctd pj xm http	5
umap u m a	5
and vero e cells	5
of cancer cell lines	5
c bnwyax e ooj	5
for a subset of	5
used to determine the	5
mathematical models and bayesian	5
n o p h	5
n k m as	5
ctd hn t http	5
ve c d t	5
h ctd jmtrf http	5
the average power plot	5
com b bnwyax czfn	5
this resulted in a	5
h ctd q ll	5
to that of the	5
tens of thousands of	5
stat phosphorylation by il	5
human and mouse genomes	5
ctd eix e http	5
ctd q kl http	5
d n ai ve	5
kdl jg a https	5
are clustered by whether	5
analyzed in this study	5
t b m d	5
com b bnwyax votga	5
average mutual information values	5
b h ctd haw	5
is calculated by summing	5
b bnwyax czfn http	5
the american college of	5
the single cell rna	5
h t h c	5
each cell line dpg	5
it is marked as	5
function in the r	5
the number of valid	5
the cancer type of	5
b h ctd pjd	5
b m d m	5
number of days between	5
grade serous ovarian cancer	5
ld in du ct	5
plot and phase difference	5
than that of no	5
associated with an exon	5
expression levels of ace	5
in the form of	5
the splice variant window	5
are shown in figure	5
ucsc genome browser database	5
h ctd gs http	5
none of which have	5
b h ctd t	5
in the edwards et	5
the functional genomics level	5
assess the impact of	5
as a response to	5
m zzqk ey c	5
in the integrated dataset	5
h homo sapiens mrc	5
h ctd jzbjy http	5
on the same strand	5
human blood virome dataset	5
for experimental em maps	5
distributions for the parameters	5
the magnitude of the	5
for the set of	5
com b bnwyax f	5
h ctd jel http	5
are highlighted in red	5
b h ctd xl	5
journal of biological chemistry	5
si n o p	5
b h ctd cq	5
is represented by a	5
according to bivariate wavelet	5
by the cgc as	5
a comparison of the	5
which were mock treated	5
power plot and phase	5
in the presence of	5
an effective means of	5
associated receptors and factors	5
e o si n	5
calu polya selection gse	5
the hbv integration sites	5
region bias rate vector	5
the number of barcode	5
b h ctd jmtrf	5
i ve ro e	5
c t l n	5
see figure s h	5
obtained from two biological	5
convolution and pooling module	5
to assess whether the	5
the oligonucleotide compositions of	5
com elakatos liquidcna data	5
global and regional strain	5
each of the cell	5
it is possible that	5
and the sum of	5
the relative contribution of	5
the closest point on	5
of circulating tumor dna	5
vitro and in silico	5
availability of data and	5
d m e o	5
stat and stat phosphorylation	5
envelope small membrane protein	5
latex kmc d https	5
min min min min	5
ctd b ifz http	5
com c bnwyax e	5
reported a ci containing	5
another type of cancer	5
b h ctd iybxb	5
whether they were annotated	5
were validated by experimental	5
to evaluate the performance	5
contour lines indicate significance	5
by their alignment scores	5
to each of the	5
m zzqk sfn http	5
is based on the	5
propranolol lisinopril atenolol amitriptyline	5
segmentation and motion estimation	5
ve c d n	5
gq and triplex motifs	5
scalar curvatures were computed	5
b h ctd dguv	5
nu m be r	5
roadmap epigenomics consortium et	5
ci containing the true	5
gradient boosted decision trees	5
as t b m	5
the th percentile of	5
in terms of a	5
be used as a	5
seq data of balf	5
oncogene and tumor suppressor	5
in the ace spike	5
after stimulation with hypil	5
of the five cancer	5
isotropic gaussian noise of	5
ccn score higher than	5
with the exception of	5
stat and stat activation	5
the same neighborhood sizes	5
ct io n time	5
of genes in the	5
times greater than that	5
the ensembl and refseq	5
the apolipoprotein b mrna	5
lower values correspond to	5
atus predicted by seqatu	5
retained in the final	5
end genes and no	5
the sum of all	5
on the gene expression	5
h ctd b ifz	5
the splice junction region	5
the pacific biosciences sequel	5
play an important role	5
of the novel junction	5
in relation to the	5
each cell type in	5
the utility of the	5
listed in supplementary table	5
m o i c	5
the concentration of the	5
u n g t	5
the set of n	5
clustered by whether they	5
to the presence of	5
of apa isoforms and	5
different types of cells	5
mismatches in regulatory motif	5
b h ctd pgh	5
see figure s d	5
scalar curvature of k	5
sequences flagged by coil	5
h ctd rpd http	5
moderate and severe covid	5
b h ctd gs	5
cell rna sequencing data	5
of the debar pipeline	5
h ctd yulf http	5
is the sum of	5
and tumor suppressor gene	5
the riemannian curvature tensor	5
b h ctd yulf	5
the ace spike interaction	5
op y nu m	5
h ctd haw http	5
h ctd yrlys http	5
between human and mouse	5
b h ctd qaf	5
lines more essential in	5
as a proxy for	5
oral mg tablet oral	5
could be used to	5
h ctd qaf http	5
c bnwyax qc https	5
h c t l	5
pacific symposium on biocomputing	5
sapiens mrc polya selection	5
d t h t	5
at the level of	5
s rbm b p	5
methods in ecology and	5
b h ctd jel	5
the same cell type	5
values correspond to better	5
bronchoalveolar lavage fluid from	5
b bnwyax f tt	5
cyclical fluctuations of various	5
o si n o	5
h ctd iybxb http	5
h ctd ymn z	5
pstat levels induced by	5
c h ctd rpd	5
based prediction of response	5
c d n ai	5
t h c t	5
t l n k	5
breast cancer cell lines	5
expression combination of all	5
journal of the american	5
on the one hand	5
they were annotated by	5
is the fraction of	5
from two biological replicates	5
genes are clustered by	5
the front of the	5
in the absence of	5
correlation coefficients for time	5
closest points on k	5
in the main text	5
e polya selection gse	5
of apolipoprotein b mrna	5
approval and consent to	5
based on the disease	5
the analysis of the	5
ethics approval and consent	5
similarity learning and cell	5
higher than the decision	5
o p h il	5
an accurate and robust	5
a table containing the	5
from the same cell	5
containing the scalar curvatures	5
in the final model	5
number of species in	5
different batch correction pipelines	5
and gordon k smyth	5
h ctd me http	5
cell lines more essential	5
total number of reads	5
gastrulation and brain datasets	5
to assess the performance	5
the protein data bank	5
to bivariate wavelet analysis	5
and consent to participate	5
their nominal tumor type	5
cell type clustering and	5
gene expression in the	5
e es se nt	5
of cells in the	5
along the environmental gradient	4
improve the model performance	4
the distribution of segment	4
detecting multiplets in snatac	4
broad and sanger institutes	4
showing genes that are	4
events greater than an	4
on the proportion of	4
of all of the	4
standard deviations above the	4
on their method and	4
of deephbv and deephint	4
basal classical primitive secretory	4
interests are bioinformatics and	4
between the first and	4
strains of the first	4
in the field of	4
heatmap of pascal p	4
gene expression profile alone	4
as well as in	4
b h ctd ymn	4
we compared sclapa with	4
h ctd xd http	4
the top scored models	4
showing spearman correlation between	4
is given by s	4
is positive if the	4
protracted periods of high	4
opt v missing ref	4
of protein ubiquitination sites	4
s ta t s	4
of the species in	4
the atus in the	4
table containing the data	4
impact on editing frequency	4
the median euclidean distance	4
opt v grch missing	4
capsules j in layer	4
was used for clustering	4
are ranked by their	4
at the cost of	4
variants which cause non	4
the species in which	4
n g p a	4
the analytical scalar curvature	4
table subtype classification profiles	4
were downloaded from ncbi	4
first and last month	4
shown in violin plots	4
ctd oc w http	4
at io p s	4
n and h n	4
a fully supervised approach	4
number of cells in	4
inverse correlation with mls	4
of the mammalian methylation	4
by variants which cause	4
approach to curvature estimation	4
a deep learning model	4
m zzqk iq http	4
lagged data were used	4
in univariate wavelet analysis	4
h ctd tdftw http	4
pbmc and islet samples	4
amygdala hypothalamus mammary root	4
tumor type are displayed	4
to remove rrnas before	4
as a result of	4
associations with editing frequency	4
median euclidean distance of	4
to the model under	4
wildtype shown in grey	4
associated with mtdna deletions	4
on the disease type	4
expression level of plau	4
their method and colored	4
h o and thiamine	4
followed after stimulation with	4
bnwyax f tt http	4
samples with ccn scores	4
c p a tie	4
we set out to	4
evaluated using the giab	4
across the enzymatic cleft	4
red dots on the	4
normal unknown general classification	4
see figure s b	4
amino acid continuous encoding	4
h ctd n qw	4
and stat followed after	4
e m g ta	4
attention intensive regions of	4
lo l m g	4
genetic and intergenic regions	4
apply only to the	4
io p s ta	4
com projects integrated crispr	4
factors independently associated with	4
a different shape depending	4
frequency pretrained model wgs	4
b model input features	4
combination of all of	4
probes on the mammalian	4
the reliability of the	4
to a file with	4
d e ns em	4
kinetics of stat and	4
reads mapped to the	4
of the tumor transcriptome	4
have been developed to	4
location of mooring sequence	4
file containing aligned rna	4
number of predicted atus	4
patterns results of analysis	4
is then used to	4
ace cells infected with	4
to test this hypothesis	4
l f p a	4
from the start of	4
that there is a	4
i tp m ifnl	4
the other two annotations	4
of the ambient space	4
are available at https	4
experimental tsss or tf	4
two molecules of pstat	4
filtering for lowly expressed	4
m fi time h	4
was greater than the	4
i c al u	4
a linear combination of	4
the maximal atu clusters	4
endometrioid serous normal unknown	4
inflexible groups such as	4
using the posterior distributions	4
we note that the	4
the relative probability of	4
a dashed red line	4
primitive secretory unknown general	4
ace polya selection gse	4
which resulted in a	4
in the mathematical models	4
in mooring sequence per	4
individual nucleotides surrounding the	4
third from the left	4
com c bnwyax g	4
dataset generated by the	4
wide profiling of gene	4
bnwyax g buj https	4
is based on a	4
seq data generated from	4
proportionmethylated m e a	4
b h ctd tdftw	4
and colored based on	4
containing the originally reported	4
o and thiamine c	4
preprocessed single cell rna	4
by flow cytometry for	4
normalized by the number	4
the vast majority of	4
the quantification of rna	4
that the fractional error	4
detecting low percent cells	4
a wide variety of	4
h n and h	4
at e b a	4
rate proportional to the	4
to u rna editing	4
ctd lyx d http	4
ctd p a http	4
lth y b a	4
sapiens a polya selection	4
base content of nucleotides	4
in at least one	4
materials and methods data	4
general ccn scores in	4
positive patients type b	4
general classification profiles of	4
ra no lo l	4
the formation of the	4
the similarity of the	4
periodicity in the distribution	4
large test set of	4
gene regulatory network inference	4
uniformly sampling n points	4
three biological replicates with	4
we did not include	4
the relations in methods	4
type i and type	4
glnexus opt v missing	4
ngsc di pbmc https	4
that the mammalian methylation	4
b m zzqk iq	4
of each of the	4
of patients with a	4
expected number of clusters	4
the use of the	4
au content of regulatory	4
from a range of	4
supplementary table general classification	4
on the mbrave platform	4
its closest point on	4
and neck squamous cell	4
the expression of the	4
multiplets detected by atac	4
op ra no lo	4
concentration of the species	4
not known to be	4
or m al iz	4
for each node u	4
maximal atu clusters with	4
gsea reactome pathway enrichment	4
yellow lines indicate co	4
the cytoplasmic domain of	4
by a factor of	4
on the average power	4
and formulae are direct	4
single gene mrna transcript	4
the cancer type with	4
using a deep learning	4
right side of the	4
ctd k ci http	4
was used to remove	4
the spread of covid	4
that are not well	4
cpgs that map to	4
was calculated by the	4
is known to be	4
b bnwyax fojka http	4
expression of these genes	4
of gene annotation choice	4
her research interests are	4
to compute the scalar	4
the innate immune responses	4
c h no s	4
simlr rafsil rafsil sclapa	4
language and environment for	4
belonging to different clades	4
conservation at the functional	4
m c p a	4
regularized gradient boosted decision	4
for similarity learning and	4
and credible intervals of	4
the attention intensive regions	4
general classification heatmap of	4
u rna editing in	4
ng e l og	4
represented as volcano plots	4
the sensitivity of the	4
as described in methods	4
on the human epic	4
to a new host	4
in the image patches	4
days after the first	4
snapshot of a single	4
of points reported a	4
a part of the	4
each of the integrated	4
with a different shape	4
ea d e ns	4
the same set of	4
c m kdl xp	4
points reported a ci	4
the third from the	4
the maximal atu cluster	4
of potentially adverse developments	4
st im at ed	4
the originally reported scalar	4
the precision and recall	4
characterization of cardiac mechanics	4
of a single nucleotide	4
library preparation method polya	4
highest proportion of correct	4
the royal society b	4
set the stage for	4
to one of the	4
bnwyax uh g https	4
hopkins university school of	4
we are able to	4
fi pstat time min	4
bl r ef s	4
ctd r by http	4
shown in figure a	4
m c t p	4
tsss or tf binding	4
em bl r ef	4
mooring sequence per unit	4
strength of environmental filtering	4
the law of mass	4
read pairs per nucleus	4
percent of pep trpm	4
gene expression levels of	4
important to note that	4
initial concentrations in the	4
splice variant window size	4
month of the analysis	4
in their nominal tumor	4
were used in the	4
head and neck squamous	4
supplementary table subtype classification	4
written to stdout in	4
of cells that are	4
somatic copy number alterations	4
with at least two	4
with structures were manually	4
proportions of each cell	4
estimates obtained by fitting	4
and last month of	4
were removed from the	4
which they are contained	4
corrections applied by debar	4
to determine the number	4
for the detection of	4
from each of the	4
proportion of correct and	4
a more sustained stat	4
are part of the	4
read pairs per cell	4
c bnwyax g buj	4
out from the whole	4
s s spen p	4
the sex of the	4
of classifications and the	4
of species in the	4
in a way that	4
the mean and standard	4
b h ctd akii	4
h il n ai	4
by carlsson et al	4
of gene expression profiles	4
and the fraction of	4
atus in the other	4
for lowly expressed genes	4
no lo l m	4
serous normal unknown general	4
levels of ifns in	4
the percentage of points	4
pstat time min ps	4
the mean number of	4
by deepmm and mainmast	4
stat followed after stimulation	4
the same ambient dimension	4
s ev er e	4
h ctd lgtuz http	4
rank in ordered dataset	4
are listed in table	4
is expected to have	4
figure b shows the	4
showed favorable interactions with	4
using the same neighborhood	4
q u e n	4
was implemented by the	4
that were classified as	4
as a dashed red	4
new infections is reflected	4
in order to identify	4
were found to have	4
sequence motif b per	4
in this study was	4
ta t s ta	4
subtype classification profiles of	4
uniformly sampled n points	4
for the maps at	4
from healthy negative control	4
if it if it	4
are direct output of	4
on either side of	4
in the present study	4
based deep learning model	4
in a number of	4
that are conditionally essential	4
to its closest point	4
and subclonal tumour cells	4
b m zzqk rjuf	4
be included in the	4
visualization of the novel	4
sabaeus vero e polya	4
both precision and recall	4
cell lines using the	4
species in which they	4
one of them phosphorylated	4
depending on their method	4
a broad range of	4
from the single cell	4
or tf binding sites	4
the rate at which	4
com b bnwyax dkgl	4
the host prediction accuracy	4
diagnosis and prognosis of	4
towards the front of	4
spread with each bar	4
b bnwyax ztmd http	4
the sensitivity and specificity	4
to account for the	4
to address these challenges	4
for each pair of	4
using the relations in	4
allow the user to	4
represents general ccn scores	4
on the test set	4
of the human genome	4
based on the gene	4
was performed on the	4
measured by flow cytometry	4
using the same ambient	4
more than half of	4
is shown as a	4
in the spike ace	4
the distribution of cross	4
in new infections is	4
buffer b for min	4
were classified as a	4
from the true proportions	4
f p a tie	4
y b a lf	4
was then used to	4
is considered to be	4
the value of the	4
and brain datasets respectively	4
is important to note	4
the box counting dimension	4
plot visualization of the	4
evaluated atus from smrt	4
precision and recall were	4
in pbmc and islet	4
pstat ps ta t	4
a step size of	4
alignment file containing aligned	4
a primary seed node	4
additional details of the	4
is closer to the	4
c t p m	4
cells which were mock	4
pr op ra no	4
only samples with ccn	4
ctd n qw http	4
the set of closest	4
x our new functions	4
was carried out using	4
sashimi plot visualization of	4
re gu lat ion	4
sequence per unit increments	4
m e a n	4
regulation of rna pol	4
the weighted sum of	4
zzqk c cd http	4
from edwards et al	4
the human blood virome	4
is reflected in a	4
the two series are	4
il n ai ve	4
all events greater than	4
kdl xp y https	4
to a reference genome	4
using the second fundamental	4
connection to a metabolite	4
bound to one molecule	4
two biological replicates with	4
mrc and vero e	4
of the gene expression	4
in the near future	4
were mapped to the	4
a c o o	4
of bronchoalveolar lavage fluid	4
was used as a	4
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standard deviation of the	4
c bnwyax uh g	4
a group of mono	4
an amplitude of shown	4
y stat b p	4
if a sample has	4
lung squamous cell carcinoma	4
m fi pstat time	4
from two experiments with	4
we also found that	4
re p rin t	4
patterns in return plots	4
the nature of the	4
neighborhood sizes determined for	4
the number of times	4
in the training set	4
ancestral and subclonal tumour	4
to one molecule of	4
nucleotides downstream of the	4
greater than an amplitude	4
method and colored based	4
the accuracy of rna	4
patients with a prescription	4
h ctd akii http	4
genes that are differentially	4
in different cell types	4
improve the accuracy of	4
in the cancer type	4
shape depending on their	4
remove rrnas before sequencing	4
ordered from the cancer	4
kinetics of stat activation	4
the spike ace interaction	4
expression and alternative polyadenylation	4
m od er at	4
k m o i	4
only to the model	4
b h ctd cjaux	4
oc k m o	4
overlaid onto umap coordinates	4
an adaptive learning approach	4
predict hbv integration sites	4
difference in the areas	4
the difference in the	4
differential motif usage between	4
more likely to be	4
the results of this	4
is associated with an	4
scalar curvatures reported by	4
the orientation of the	4
deviations above the mean	4
com b bnwyax fojka	4
unbound cytoplasmic phosphorylated stat	4
o i ifnl mers	4
of the first and	4
and cell type clustering	4
we also calculated the	4
b h ctd lyx	4
b bnwyax dkgl http	4
amplitude of shown in	4
dimensional hollow unit sphere	4
colored based on the	4
p re p rin	4
ctd ymn z http	4
the solid red dots	4
the preprint server for	4
sizes determined for the	4
augmented image patch dataset	4
due to the presence	4
ha ng e l	4
h ea lth y	4
values are shown in	4
r e d https	4
b h ctd lgtuz	4
derived from the same	4
genes that are conditionally	4
and secondary structure type	4
than an amplitude of	4
e a n m	4
t s ta t	4
b m zzqk ey	4
h ctd xhkpd http	4
f t p m	4
hbv integration sequences as	4
tumor types and subtypes	4
number of mismatches over	4
eas and afr populations	4
clinical practice research datalink	4
we next investigated whether	4
in the blast results	4
ovarian cancer cell lines	4
perfect matching for m	4
of mismatches over time	4
variant is associated with	4
more sustained stat phosphorylation	4
of severe acute respiratory	4
b m zzqk c	4
structures were manually added	4
longer periodicity in the	4
suggesting the outlines of	4
negative association with editing	4
for simulated em maps	4
in the distribution of	4
index of multiple deprivation	4
set to be the	4
between the three annotations	4
on perfect matching for	4
kinetics of irf protein	4
r at io p	4
the scalar curvatures reported	4
to be used to	4
the performance of ccn	4
zzqk ey c http	4
the highest ccn score	4
e b a lf	4
by uniformly sampling n	4
b m c p	4
phosphorylation kinetics of stat	4
com b bnwyax d	4
intergenic region bias rate	4
m a tc h	4
last month of the	4
by the sequencing quality	4
densely connected convolutional networks	4
stat and stat followed	4
to a quadratic over	4
the first two principal	4
that are upregulated in	4
of irf protein expression	4
we also compared the	4
are grouped as class	4
mismatches for each pcr	4
c to u rna	4
m al iz ed	4
are represented with a	4
the entire cardiac cycle	4
rates to the virus	4
science foundation of china	4
high grade serous ovarian	4
ns em bl r	4
can be seen in	4
between module score and	4
the selected time lags	4
curvature of image patch	4
the gene expression levels	4
a de bruijn graph	4
cells stably expressing wt	4
bnwyax e ooj https	4
com b bnwyax wjxm	4
sets from the abc	4
the riemannian curvature of	4
rpe cells stably expressing	4
the distribution of the	4
across different sizes of	4
b h ctd gdid	4
motifs compared with reshuffled	4
gaussian noise of magnitude	4
the sequencing quality control	4
a l f p	4
increasing the penalty parameter	4
homo sapiens a polya	4
h ctd gdid http	4
the model under hypothesis	4
with estimates obtained by	4
m zzqk rjuf http	4
patients with a first	4
the preprocessed single cell	4
b h ctd xd	4
polya selection gse mers	4
compute the scalar curvature	4
m oc k m	4
that the distribution of	4
in a subset of	4
c h o and	4
can be set using	4
genetic variants associated with	4
solid red dots on	4
canonical splicing patterns results	4
preparation method polya selection	4
u n g p	4
see figure s c	4
unbound cytoplasmic unphosphorylated stat	4
b h ctd r	4
after filtering for lowly	4
a specific prescription event	4
e m a tc	4
the set of candidate	4
and environment for statistical	4
data were used for	4
g p a tie	4
polya selection was used	4
a l f t	4
p h il n	4
an alignment file containing	4
correlation between module score	4
controls were generated by	4
a single nucleotide variant	4
m zzqk srq http	4
hair and nonhair cells	4
the first prescription event	4
from allen mouse brain	4
broad and sanger datasets	4
od er at e	4
phase difference in the	4
the augmented image patch	4
gene expression and alternative	4
b h ctd xhkpd	4
cyclical patterns in return	4
staying around levels of	4
obtained from two experiments	4
a success rate of	4
of average mutual information	4
secretory unknown general classification	4
subsites of the enzyme	4
phage and host genomes	4
the phase difference in	4
set of experimental maps	4
the top most variable	4
h ctd cjaux http	4
peptide fold change log	4
clinical events before prescription	4
for each cancer type	4
p a c o	4
the proportion of noise	4
two experiments with each	4
by the triplex package	4
v grch missing ref	4
cell type annotations for	4
are then used to	4
nominal tumor type are	4
heterotypic and homotypic multiplet	4
of mismatches in the	4
of rna pol ii	4
periods of high cross	4
at least one match	4
wa h homo sapiens	4
if n a if	4
classical primitive secretory unknown	4
than expected by chance	4
law of mass action	4
and cd t cells	4
the two distance matrices	4
b bnwyax d gc	4
curvature is given by	4
used in the analysis	4
n or m al	4
expression levels of genes	4
of gene i in	4
the th percentile method	4
were used for x	4
scalar curvature is given	4
set of closest points	4
l f t p	4
comprehensive integration of single	4
each of the four	4
on the epic array	4
h ctd jzyin http	4
validated by experimental ttss	4
genes that are common	4
we used the same	4
com c bnwyax uh	4
a significance threshold of	4
in equation is a	4
after the first prescription	4
er at e b	4
com acnash rdrugtrajectory https	4
robust to image artifacts	4
which can be used	4
with each bar color	4
a polya selection gse	4
table general classification profiles	4
a language and environment	4
allen mouse brain atlas	4
points in the downsampled	4
the selection of the	4
mapping rates to the	4
less than or equal	4
in any of the	4
motifs in their mtdna	4
the standard deviation of	4
the phage and host	4
the number of shared	4
has been used to	4
in the latest release	4
upswing in new infections	4
dots on the average	4
b h ctd oc	4
o i ifnb sars	4
annotation choice on the	4
b m c t	4
johns hopkins university school	4
o i c al	4
lis t m et	4
for presence absence data	4
processing methods and batch	4
the similarity of cancer	4
all of the to	4
gene annotation choice on	4
c h ctd k	4
n m e th	4
that the number of	4
gene mrna transcripts with	4
and oligonucleotide compositions of	4
research interests are bioinformatics	4
formulae are direct output	4
editing of apolipoprotein b	4
in the realistic simulation	4
assess the performance of	4
in the areas with	4
a n m e	4
boxes with structures were	4
lines indicate significance of	4
in which they are	4
a special case of	4
the rest of the	4
that the majority of	4
for learning association for	4
evaluated the performance of	4
of them phosphorylated on	4
levels of stat and	4
splicing patterns results of	4
b h ctd p	4
in each elapsed month	4
a small number of	4
distributed stochastic neighbor embedding	4
for a range of	4
between strains of the	4
is associated with the	4
the mls of mammals	4
ccn scores from scrna	4
is the most important	4
br ea d e	4
profile hidden markov models	4
lung bronchial epithelial cells	4
containing the true scalar	4
to those of the	4
single cell rna sequencing	4
but with estimates obtained	4
environment for statistical computing	4
are included in the	4
is consistent with a	4
uniformly sampled from s	4
number of triplex motifs	4
spearman correlation between module	4
and prognosis of covid	4
dimension and neighborhood sizes	4
range of gene expression	4
was zoned out from	4
and spatial transcriptomics data	4
ground truth in the	4
manifold dimension and neighborhood	4
this variant is associated	4
identified by regtools that	4
sampling n points from	4
o path to file	4
front of the cleft	4
or another type of	4
made use of the	4
increase in the number	4
regulatory sequence motif c	4
the r package coil	4
relations in methods sections	4
n a if n	4
first two principal components	4
latex r e d	4
different shape depending on	4
type b model input	4
number of classifications and	4
com b bnwyax ztmd	4
minutes of developmental time	4
igv snapshot of a	4
of epithelial sodium channels	4
glnexus opt v grch	4
zoned out from the	4
among the six clades	4
of the coi barcode	4
triplex motifs and mls	4
and initial concentrations in	4
modules are represented with	4
on the right side	4
represented with a different	4
was downloaded from the	4
let m be the	4
the majority of the	4
on the accuracy of	4
of science and technology	4
likely due to the	4
dimer bound to one	4
and tcga pan cancer	4
models are ranked by	4
start of the epidemic	4
bnwyax d gc http	4
of pstat and pstat	4
direct output of netid	4
ea lth y b	4
total number of mismatches	4
c o o rd	4
file containing the reference	3
we find that the	3
within an intron of	3
the image patches and	3
a cell membrane protein	3
different subsites of the	3
university of science and	3
the highest number of	3
the ability of seqatu	3
cysteine proteases such as	3
can be detected by	3
at each time point	3
the contribution of the	3
with highest proportion of	3
center for biomedical imaging	3
of a grid point	3
cell profiling of gene	3
are indicated on the	3
by the institute of	3
set of common essentials	3
patients and healthy controls	3
of the utility of	3
this study are available	3
the intersection of the	3
one match in the	3
the atus predicted by	3
was defined as the	3
scalar curvatures using the	3
the number of cpgs	3
atlases and computational models	3
of bayes factor gene	3
with all three annotations	3
the platform difference between	3
at en ol ol	3
in each tcga cohort	3
the edited cytidine with	3
least one match in	3
in human and mouse	3
the optimal parameter set	3
data generated by the	3
main content home about	3
correlation between gwas enrichment	3
drg single cell data	3
proportion of classification categories	3
is a part of	3
and lung samples of	3
rpe clones stably expressing	3
genes in the refseq	3
by one sample t	3
used to assess the	3
cytoplasmic domain of il	3
respiratory epithelial cell lines	3
cancer type of the	3
then used candi to	3
lines with ccn scores	3
points enclosed by the	3
and we also found	3
cell similarity learning and	3
cancer types that we	3
infection efficiency in cells	3
are shown on the	3
matched with each individual	3
a and node b	3
with editing frequency in	3
r an ke d	3
that the changes in	3
shown in a white	3
the coefficients of the	3
martinos center for biomedical	3
p m ifnl b	3
the level of receptor	3
computational models of the	3
entry routes and innate	3
protein structure determination from	3
was used to measure	3
d bcov s ctimes	3
atus that were validated	3
fi time min time	3
of cancer models to	3
all articles animal behavior	3
t times to generate	3
of particular canonical junctions	3
the true proportions for	3
normalized to to maximal	3
and methods data collection	3
general ccn scores from	3
in neural information processing	3
according to the predicted	3
each essentiality mutation pair	3
in the eas population	3
com b bnwyax zcfxr	3
confidence interval of the	3
the current version of	3
biology genetics genomics immunology	3
of the pqa score	3
subpopulations of cells that	3
the international committee on	3
with differential motif usage	3
atom differences and abiotic	3
was used as the	3
encoded in the same	3
compared sclapa with seven	3
the development of the	3
transduced with a vector	3
if they have a	3
any shade of blue	3
e ss en tia	3
a unique strategy to	3
fold change log p	3
open in one allele	3
gene i in a	3
cost of the possibility	3
in proceedings of the	3
significantly improve the model	3
are used as a	3
of the ms multi	3
d e general classification	3
synthetic biology systems biology	3
essential genes are shown	3
in comparison to the	3
the highest correlation with	3
number of clusters and	3
dominant tissue small intestine	3
advanced search subject areas	3
in one or more	3
half the intervals in	3
read and approved the	3
model sensitivity of the	3
each event identified by	3
is a linear combination	3
rna pol ii p	3
t p m ifnb	3
from the ambient space	3
s i and s	3
of cell division events	3
neighborhoods used in computing	3
v and candidate atom	3
under the column header	3
generated by the sequencing	3
encyclopedia of dna elements	3
iao and added in	3
match in the mtdna	3
was considered to be	3
project consortium et al	3
toolkit called sclapa for	3
colored region corresponds to	3
s at en ol	3
stronger effect in the	3
four different batch correction	3
return plots of increasing	3
integrated genomic characterization of	3
repeated the procedure t	3
and mixed correct classified	3
connections in the network	3
a global cancer data	3
from the python package	3
of genes that are	3
cell lines with ccn	3
are involved in the	3
evidence of stop codons	3
to right on each	3
source code is available	3
cn of each segment	3
from the cancer dependency	3
from the other study	3
data and materials the	3
group of cell lines	3
puerto rican hg amr	3
do not account for	3
of the same disease	3
of the optical flow	3
east respiratory syndrome coronavirus	3
in regulatory motif c	3
value computed for data	3
that the two series	3
e xp re ss	3
u and v respectively	3
five cancer types that	3
p m ifnb a	3
run run run total	3
when it comes to	3
dataset is available at	3
all capsules i in	3
po lr a s	3
all the four datasets	3
supervised approach for predicting	3
mammalian methylation array for	3
the number of occurrences	3
only one of the	3
this study was released	3
with the optimal parameter	3
agree with each other	3
cell line from the	3
number of species for	3
can only be found	3
response experiments for pstat	3
new insights into the	3
v missing ref https	3
the loss function of	3
to the expression levels	3
the gwas central database	3
count stop codon count	3
these results showed that	3
f y f y	3
and ordered from the	3
of a series of	3
seven similarity metrics and	3
growth in human cells	3
sample has ccn score	3
genes in each tcga	3
are shown in fig	3
method polya selection was	3
is the evaluation of	3
pathology pharmacology and toxicology	3
ev er e ifnl	3
the question of whether	3
institute and state university	3
content of regulatory sequence	3
see equation in methods	3
to adapt to a	3
motif d per unit	3
generate an empirical distribution	3
for quantifying human rna	3
class is the majority	3
is small compared to	3
of m for the	3
correlate with each other	3
of items in the	3
gene expression and differential	3
the prediction performance of	3
motifs and mtdna deletions	3
embryonic mice sacked at	3
to to maximal il	3
coronaviruses prevalent in humans	3
cprd gold full data	3
pearson correlation coefficient between	3
prescription event on record	3
standard deviation of this	3
represents a module of	3
the topology of a	3
sex of the cell	3
gene pairs frequently encoded	3
biology of the cell	3
added in the latest	3
polytechnic institute and state	3
on the all dataset	3
neck squamous cell carcinoma	3
means that it is	3
in the initial annotation	3
biology cell biology clinical	3
and stat to il	3
cell lines where they	3
grade serous ovarian carcinoma	3
the stability of the	3
cell umi count matrix	3