Distant Reader - keyword-ards-cord

Introduction

This is a Distant Reader "study carrel", a set of structured data intended to help the student, researcher, or scholar use & understand a corpus.

This study carrel was created on 2021-05-24 by Eric Morgan <emorgan@nd.edu>. The carrel was created using the Distant Reader cord process, and the input was the result of a query applied to a local mirror of CORD, a data set of scholarly articles on the topic of COVID-19. The actual query was: keywords:ards. The results of this query were saved in a cache and transformed into a set of plain text files. All of the analysis -- "reading" -- has been done against these plain text files. For example, a short narrative report has been created. This Web page is a more verbose version of that report.

All study carrels are self-contained -- no Internet connection is necessary to use them. Download this carrel for offline reading. The carrel is made up of many subdirectories and data files. The manifest describes each one in greater detail.

Size

There are 227 item(s) in this carrel, and this carrel is 2,162,509 words long. Each item in your study carrel is, on average, 9,526 words long. If you dig deeper, then you might want to save yourself some time by reading a shorter item. On the other hand, if your desire is for more detail, then you might consider reading a longer item. The following charts illustrate the overall size of the carrel.

Readability

On a scale from 0 to 100, where 0 is very difficult and 100 is very easy, the documents have an average readability score of 44. Consequently, if you want to read something more simplistic, then consider a document with a higher score. If you want something more specialized, then consider something with a lower score. The following charts illustrate the overall readability of the carrel.

Word Frequencies

By merely counting & tabulating the frequency of individual words or phrases, you can begin to get an understanding of the carrel's "aboutness". Excluding "stop words", some of the more frequent words include:

patients, ards, study, lung, respiratory, icu, acute, mortality, group, care, results, clinical, severe, associated, ventilation, injury, covid, may, syndrome, data, treatment, cells, blood, pulmonary, days, pressure, patient, hospital, analysis, high, sepsis, using, levels, disease, failure, also, methods, il, time, increased, used, i, day, infection, risk, two, distress, studies, one, therapy

Using the three most frequent words, the three files containing all of those words the most are 8th European Congress of Intensive Care Medicine Athens - Greece, October 18–22, 1995 Abstracts, ESICM 2010 WEDNESDAY SESSIONS 13 October 2010, and PS 0420-0716.

The most frequent two-word phrases (bigrams) include:

acute respiratory, respiratory distress, distress syndrome, intensive care, lung injury, mechanical ventilation, critically ill, septic shock, care unit, ill patients, respiratory failure, acute lung, ards patients, critical care, risk factors, patients admitted, severe acute, icu admission, severe ards, organ failure, mg kg, control group, icu patients, pao fio, hospital mortality, mechanically ventilated, mortality rate, cardiac arrest, ml kg, tidal volume, two groups, prone positioning, apache ii, inflammatory response, membrane oxygenation, icu stay, extracorporeal membrane, stem cells, significantly higher, mean age, respiratory syndrome, observational study, coronavirus disease, ventilated patients, airway pressure, critical illness, severe sepsis, sofa score, care units, nitric oxide

And the three file that use all of the three most frequent phrases are Acute Respiratory Distress Syndrome as an Organ Phenotype of Vascular Microthrombotic Disease: Based on Hemostatic Theory and Endothelial Molecular Pathogenesis Pharmacotherapy for Prevention and Treatment of Acute Respiratory Distress Syndrome: Current and Experimental Approaches, and Goal-Oriented Respiratory Management for Critically Ill Patients with Acute Respiratory Distress Syndrome.

While often deemed superficial or sophomoric, rudimentary frequencies and their associated "word clouds" can be quite insightful:

Keywords

Sets of keywords -- statistically significant words -- can be enumerated by comparing the relative frequency of words with the number of times the words appear in an entire corpus. Some of the most statistically significant keywords in the carrel include:

ards, patient, covid-19, icu, sars, study, ecmo, lung, acute, day, peep, group, ali, result, care, method, cell, respiratory, mortality, lps, hospital, intensive, vap, sofa, high, apache, aki, introduction, conclusion, pulmonary, rsv, niv, msc, level, increase, il-6, january, h1n1, blood, ventilation, university, trauma, tnf, surfactant, prone, patienten, mean, iqr, injury, hour

And now word clouds really begin to shine:

Topic Modeling

Topic modeling is another popular approach to connoting the aboutness of a corpus. If the study carrel could be summed up in a single word, then that word might be patients, and Treatment of acute respiratory distress syndrome with allogeneic adipose-derived mesenchymal stem cells: a randomized, placebo-controlled pilot study is most about that word.

If the study carrel could be summed up in three words ("topics") then those words and their significantly associated titles include:

If the study carrel could be summed up in five topics, and each topic were each denoted with three words, then those topics and their most significantly associated files would be:

patients, icu, study - 2nd World Congress on Pediatric Intensive Care 1996 Rotterdam, The Netherlands, 23–26 June 1996 Abstracts of Oral Presentations, Posters and Nursing Programme
lung, ards, patients - Acute Lung Injury: The Injured Lung Endothelium, Therapeutic Strategies for Barrier Protection, and Vascular Biomarkers
patients, ards, respiratory - Model-based PEEP titration versus standard practice in mechanical ventilation: a randomised controlled trial
cells, stem, mscs - The regulatory effect of microRNA-21a-3p on the promotion of telocyte angiogenesis mediated by PI3K (p110α)/AKT/mTOR in LPS induced mice ARDS
ecmo, extracorporeal, membrane - Spotted fever rickettsioses causing myocarditis and ARDS: a case from Sri Lanka

Moreover, the totality of the study carrel's aboutness, can be visualized with the following pie chart:

Noun & Verbs

Through an analysis of your study carrel's parts-of-speech, you are able to answer question beyonds aboutness. For example, a list of the most frequent nouns helps you answer what questions; "What is discussed in this collection?":

patients, study, lung, mortality, group, results, ventilation, injury, care, data, cells, syndrome, treatment, blood, days, pressure, analysis, levels, sepsis, failure, time, infection, disease, risk, methods, patient, studies, hospital, distress, therapy, cell, cases, day, admission, groups, rate, use, pneumonia, score, shock, outcome, age, years, response, effects, factors, ml, hours, system, effect

An enumeration of the verbs helps you learn what actions take place in a text or what the things in the text do. Very frequently, the most common lemmatized verbs are "be", "have", and "do"; the more interesting verbs usually occur further down the list of frequencies:

used, associated, increased, including, shows, compared, induced, following, performed, reduce, finding, received, require, improve, report, assessed, evaluate, treating, measured, based, decreased, suggests, admitted, identified, related, observed, developing, determined, leading, considered, died, causing, demonstrated, remained, studied, provide, according, presenting, obtained, defining, occur, described, ventilated, resulted, investigated, controlled, predicting, collect, needed, indicated

Proper Nouns

An extraction of proper nouns helps you determine the names of people and places in your study carrel.

ARDS, ICU, COVID-19, ECMO, SARS, LPS, II, Fig, Care, ALI, mg, TNF, IL-6, ±, CI, kg, CoV-2, C, Hospital, M., CT, Intensive, APACHE, A, AKI, T, VAP, L, J., S., der, Group, Table, NIV, MV, January, C., China, University, B, H1N1, E., D, IV, PEEP, CO, IQR, P., CMV, SP

An analysis of personal pronouns enables you to answer at least two questions: 1) "What, if any, is the overall gender of my study carrel?", and 2) "To what degree are the texts in my study carrel self-centered versus inclusive?"

we, our, it, their, its, they, i, them, he, his, us, she, itself, her, themselves, you, one, your, him, my, himself, me, s, peli2, em, rrt, ours, mrs, imagej, α1-ar, theirs, thee, pi-3-kinase, ourselves, oneself, mrnas, herself, cxcl10, , wi~, upar, upa, u2gm3kyh, tv/, tnf~, tnfrt, thei, ta, t, rad5

Below are words cloud of your study carrel's proper & personal pronouns.

Adjectives & Verbs

Learning about a corpus's adjectives and adverbs helps you answer how questions: "How are things described and how are things done?" An analysis of adjectives and adverbs also points to a corpus's overall sentiment. "In general, is my study carrel positive or negative?"

respiratory, acute, severe, clinical, pulmonary, high, significant, higher, mechanical, inflammatory, intensive, septic, cardiac, non, early, first, ill, different, low, mean, lower, positive, endothelial, critical, arterial, medical, human, vascular, immune, specific, therapeutic, normal, important, renal, common, major, systemic, prospective, new, patient, viral, median, similar, total, prone, alveolar, potential, anti, retrospective, present

also, however, significantly, critically, well, respectively, therefore, even, often, mechanically, still, especially, prior, recently, previously, statistically, frequently, less, furthermore, moreover, mainly, highly, finally, currently, clinically, later, particularly, potentially, first, directly, least, prospectively, independently, yet, usually, now, commonly, immediately, probably, alone, rapidly, early, together, rather, already, retrospectively, relatively, daily, additionally, subsequently

Next steps

There is much more to a study carrel than the things outlined above. Use this page's menubar to navigate and explore in more detail. There you will find additional features & functions including: ngrams, parts-of-speech, grammars, named entities, topic modeling, a simple search interface, etc.

Again, study carrels are self-contained. Download this carrel for offline viewing and use.

Thank you for using the Distant Reader.