quadgram

This is a table of type quadgram and their frequencies. Use it to search & browse the list to learn more about your study carrel.

quadgram	frequency
severe acute respiratory syndrome	85
of infectious bronchitis virus	59
r n a l	54
u r n a	54
o u r n	54
j o u r	54
n a l p	48
r o o f	48
p r o o	48
infect genet evol doi	48
a l p r	48
l p r e	48
acute respiratory syndrome coronavirus	43
avian infectious bronchitis virus	39
of avian infectious bronchitis	30
middle east respiratory syndrome	30
of the s gene	28
infectious bronchitis virus in	25
ck ch lhlj vii	24
of severe acute respiratory	23
article can be found	22
this article can be	22
codon usage pattern of	21
east respiratory syndrome coronavirus	21
in the present study	21
codon usage bias of	20
o o f journal	19
o f journal pre	19
nucleotide and amino acid	19
human respiratory syncytial virus	19
closely related to the	19
data to this article	18
can be found online	18
be found online at	18
di martino et al	18
supplementary data to this	18
to this article can	18
the genetic diversity of	18
synonymous codon usage in	17
of synonymous codon usage	16
rna was extracted from	16
s and n proteins	15
phylogenetic analysis of the	15
complete genome sequences of	15
of the reemerging korean	14
were closely related to	14
the codon usage pattern	14
the codon usage of	13
most closely related to	13
the synonymous codon usage	13
strain ck ch lhlj	13
of human respiratory syncytial	13
of hepatitis c virus	13
molecular evolutionary genetics analysis	13
analysis of codon usage	12
the s coding region	12
the reemerging korean pedv	12
a large number of	12
and molecular characterization of	12
this is the first	12
phylogenetic analysis based on	12
usage pattern of ev	12
of codon usage bias	12
isolation and characterization of	12
found online at https	11
in the s subunit	11
this work was supported	11
and characterization of a	11
the codon usage bias	11
viral rna was extracted	11
the s gene of	11
can be used to	10
on the other hand	10
analysis of the s	10
the gene source of	10
obtained in this study	10
analysis of synonymous codon	10
coronaviruses as the gene	10
was found to be	10
were obtained from the	10
ns b and ns	10
the complete genome sequences	10
as shown in fig	10
as the gene source	10
the complete genome of	10
characterization of a novel	10
the end of the	10
molecular characterization of a	10
was supported by the	10
strains ck ch lnm	9
the whole coding sequence	9
phylogenetic tree based on	9
human immunodeficiency virus type	9
porcine epidemic diarrhea virus	9
reemerging korean pedv strains	9
of the s protein	9
whole coding sequence of	9
as a result of	9
in the s gene	9
natural selection from host	9
for the development of	9
on the surface of	9
the s subunit gene	9
were identified in the	9
an important role in	9
the results of the	9
the s and n	9
group i coronavirus nsp	9
coronavirus infectious bronchitis virus	9
codon usage bias in	9
in this study were	9
the prevalence of the	8
national center for biotechnology	8
to better understand the	8
vp and vp genes	8
in the united states	8
lnm and ck ch	8
infectious bronchitis virus from	8
phylogenetic tree was constructed	8
and amino acid identities	8
for the first time	8
the international committee on	8
codon usage of the	8
i coronavirus nsp proteins	8
and a final extension	8
and n proteins of	8
analysis based on the	8
the overall codon usage	8
tree was constructed using	8
in this study are	8
international committee on taxonomy	8
on taxonomy of viruses	8
the first report of	8
ck ch lnm and	8
work was supported by	8
in the orf a	8
coding sequence of ev	8
the analysis of the	8
is one of the	8
were found to be	8
committee on taxonomy of	8
sequence analysis of the	8
the orf a b	8
of the phylogenetic tree	8
in the vp gene	8
the vp gene of	8
samples were collected from	8
deposited in genbank under	8
s and s subunits	8
play a role in	8
analysis of infectious bronchitis	8
and ck ch ldl	8
more closely related to	8
in the spike protein	8
ch lnm and ck	8
in the genbank database	8
nucleotide sequences of the	8
canine infectious respiratory disease	8
g p rotavirus strain	8
have been detected in	8
of the g protein	7
complete genome sequence of	7
sequences of the s	7
these results suggest that	7
of the s subunit	7
is shown in fig	7
characterization of a new	7
is the first report	7
generated in this study	7
the nucleotide and amino	7
the complete polyprotein gene	7
identified in this study	7
complete genome of the	7
coding sequences of ev	7
of the synonymous codon	7
tree based on the	7
a major role in	7
nsp proteins of group	7
of the virus in	7
of human influenza a	7
genome sequences of the	7
a member of the	7
shaping the codon usage	7
the maximum likelihood method	7
in the s and	7
may be related to	7
found online at http	7
phylogenetic tree of the	7
of the vp gene	7
the s rrna gene	7
the spike protein of	7
were included in the	7
synonymous codon usage pattern	7
evolutionary and ecological processes	7
and ck ch lhlj	7
foot and mouth disease	7
were deposited in genbank	7
was closely related to	7
the emergence of new	7
of polish ibv strains	7
in the phylogenetic tree	7
end of the genome	7
center for biotechnology information	7
one of the most	7
may be involved in	7
of the virus to	7
v i e r	6
of aliphatic amino acids	6
ibv ck sudan ar	6
parts of the world	6
m l o c	6
spike protein of sars	6
significant difference in the	6
studies are required to	6
infectious bronchitis virus isolates	6
in recent years in	6
in poultry and other	6
evolution j o u	6
the length of the	6
usage bias of the	6
used to amplify the	6
the origin of the	6
study was supported by	6
a l h o	6
it is necessary to	6
nsp proteins of hcov	6
the vp and vp	6
orf a b gene	6
the reemerging korean strains	6
have been reported in	6
the world health organization	6
p a g e	6
the nsp proteins of	6
genetics and evolution j	6
e m e e	6
using the maximum likelihood	6
markov chain monte carlo	6
n a l h	6
was isolated from a	6
results showed that the	6
in the case of	6
e e g i	6
are shown in table	6
this study was to	6
was used as a	6
of the orf gene	6
serotype of infectious bronchitis	6
m e e g	6
avian coronavirus infectious bronchitis	6
of this study was	6
used in this study	6
the orf gene of	6
o c a t	6
the national center for	6
mafft multiple sequence alignment	6
genetic diversity of ev	6
o m e p	6
l o c a	6
e l s e	6
c a t e	6
d g mutation in	6
a t e m	6
avian infectious bronchitis coronavirus	6
with severe acute respiratory	6
e p a g	6
a better understanding of	6
positive samples were identified	6
cambodia and lao pdr	6
the four ibv strains	6
s and gc s	6
in accordance with the	6
c o m l	6
the chinese fekov strain	6
the s and s	6
we found that the	6
of the n gene	6
analysis revealed that the	6
l h o m	6
the s protein of	6
and evolution j o	6
higher than that of	6
the complete genome sequence	6
codon usage patterns of	6
and the number of	6
a final extension at	6
m e p a	6
of the spike protein	6
codon usage pattern and	6
g p rva rabbit	6
evolutionary genetics analysis version	6
the sequences of the	6
h o m e	6
e g i d	6
the present study and	6
was obtained from the	6
the s subunit of	6
l s e v	6
s e v i	6
s rrna gene sequences	6
e v i e	6
presence and absence of	6
for the presence of	6
this study was supported	6
based on the complete	6
showed the presence of	6
of canine respiratory coronavirus	6
o m l o	6
phylogenetic trees were constructed	6
have been deposited in	6
a phylogenetic tree was	6
pcr products were purified	6
and genetic characterization of	6
proteins of group i	6
were analyzed using the	6
of middle east respiratory	6
of the genome of	6
most recent common ancestor	6
be related to the	6
the presence and absence	6
sequences were aligned using	6
t e m e	6
of coding sequences for	5
for peptide vaccine formulation	5
the result of a	5
important reservoir hosts of	5
a final concentration of	5
cats in northeast china	5
n proteins of sars	5
a and orf b	5
pneumonia outbreak associated with	5
with a new coronavirus	5
has been detected in	5
rna was extracted using	5
characterization of infectious bronchitis	5
phylogenetic analysis showed that	5
betacoronavirus and avian coronaviruses	5
of cd t cells	5
new coronavirus of probable	5
associated with a new	5
and ck ch cqkx	5
extent of codon usage	5
at the end of	5
like infectious bronchitis virus	5
higher than those of	5
in addition to the	5
the majority of the	5
a collection of fecal	5
products were purified using	5
the s genes of	5
the distribution of the	5
based on the s	5
of d g mutation	5
the same amino acid	5
hosts of emerging viruses	5
in genbank under the	5
in the evolution of	5
the basic reproduction ratio	5
mutations in the s	5
the most frequent in	5
identification of a novel	5
infectious bronchitis virus strain	5
of the sars coronavirus	5
in the s protein	5
gene source of alphacoronavirus	5
antagonize host innate immunity	5
the genetic characteristics of	5
was reported to be	5
declare that they have	5
were identified using the	5
based on the full	5
of seven novel mammalian	5
in order to find	5
tree of the s	5
during the course of	5
did not show any	5
urban and sylvatic genotypes	5
were more closely related	5
source of gammacoronavirus and	5
and avian coronaviruses in	5
de wit et al	5
of pathogenic leptospira spp	5
as compared to the	5
as well as the	5
fekov strains identified in	5
sequences obtained in this	5
the characteristics of the	5
c viseu prt and	5
the authors declare no	5
mammalian and avian coronaviruses	5
deltacoronavirus supports bat coronaviruses	5
obtained in the present	5
detection and molecular characterization	5
in codon usage pattern	5
alphacoronavirus and betacoronavirus and	5
in the atlantic forest	5
the extent of codon	5
full s coding region	5
of codon usage pattern	5
coronavirus avian infectious bronchitis	5
of the us strains	5
and pathogenicity of a	5
in the middle east	5
discovery of seven novel	5
the first time in	5
sequences generated in this	5
of the overall codon	5
of kobuvirus in cats	5
accession numbers are shown	5
the most recent common	5
that they have no	5
bat coronaviruses as the	5
avian coronaviruses as the	5
of chagas disease in	5
the bayesian skyline plot	5
the presence of nov	5
the phylogenetic analysis of	5
source of alphacoronavirus and	5
the genus deltacoronavirus supports	5
ns and ns proteins	5
a large fraction of	5
orf gene of fcv	5
coronaviruses in the genus	5
in the genus deltacoronavirus	5
recombination events in the	5
from uniprot protein information	5
in the emergence of	5
were aligned using the	5
orf a and orf	5
of borrelia burgdorferi sensu	5
were submitted to the	5
it is important to	5
s protein of sars	5
and betacoronavirus and avian	5
s coding region sequences	5
little is known about	5
based on the nucleotide	5
in vitro and in	5
end of the n	5
a pneumonia outbreak associated	5
s coding region of	5
for the detection of	5
the role of bats	5
the surface of the	5
respiratory syndrome coronavirus in	5
a role in the	5
nucleotide substitutions per site	5
poultry and other birds	5
a new coronavirus of	5
geographic and social factors	5
associated with severe acute	5
strand cdna synthesis kit	5
synonymous codon usage bias	5
genus deltacoronavirus supports bat	5
novel mammalian and avian	5
and severe acute respiratory	5
the time of the	5
phylogenetic tree was generated	5
the highest immunogenicity score	5
in ns protein the	5
end of the s	5
coronaviruses in poultry and	5
was first identified in	5
may be associated with	5
of the four ibv	5
the lack of a	5
the ifng t a	5
of diagnostics and vaccines	5
with the exception of	5
similar to that of	5
a wide range of	5
authors declare that they	5
the pcr products were	5
been shown to be	5
of alphacoronavirus and betacoronavirus	5
the generalized skyline plot	5
the fcv orf gene	5
supports bat coronaviruses as	5
in the distribution of	5
of infectious bronchitis viruses	5
the presence of the	5
may play a role	5
seven novel mammalian and	5
these results indicate that	5
reservoir hosts of emerging	5
of the murine coronavirus	5
outbreak associated with a	5
genetic diversity and evolution	5
the authors declare that	5
and antigenic characteristics of	5
with the chinese fekov	5
and amino acid sequences	5
of the novel coronavirus	5
were observed in the	5
and pathogenesis of coronaviruses	5
to those of the	5
and avian coronaviruses as	5
origin and evolution of	5
gene sequences of borrelia	5
uniprot protein information for	5
were found in the	5
and nsp genes of	5
isolation and identification of	5
avian coronaviruses in the	5
of the s and	5
different parts of the	5
it is possible that	5
of the codon usage	5
gene source of gammacoronavirus	5
of the fcv orf	5
the presence of a	5
development of diagnostics and	5
the tree was inferred	4
they were not detected	4
acute respiratory distress syndrome	4
to the fact that	4
a close relationship with	4
the host immune response	4
kobuvirus in cats in	4
in the phylogenetic analysis	4
referred to the web	4
branch of the phylogenetic	4
the s protein was	4
to trypanosoma cruzi infection	4
bootstrap values are shown	4
for the circulation of	4
to the web version	4
genetic characterization of feline	4
genbank from different countries	4
are shown after isolate	4
in order to identify	4
may represent a novel	4
the open reading frame	4
eliminated from the analysis	4
disease in a colombian	4
a simple method for	4
reflect bootstrap support from	4
in the n protein	4
order to identify the	4
data were eliminated from	4
it was found that	4
characteristics of the synonymous	4
shown at each branch	4
related to those of	4
maximum likelihood method with	4
borrelia species obtained in	4
in the natural course	4
h n influenza virus	4
in cats in northeast	4
aim of this study	4
that the reemerging korean	4
closely related to a	4
bats were collected from	4
mhc class i binding	4
at each branch point	4
chagas disease in a	4
strains were isolated from	4
the group i coronavirus	4
cell epitopes of jev	4
the phylogenetic tree and	4
found to possess the	4
sequences of the borrelia	4
of the borrelia spp	4
other birds coronavirus avian	4
cases of novel coronavirus	4
shown after isolate names	4
and the s subunit	4
the g protein gene	4
the natural course of	4
according to their geographical	4
single open reading frame	4
of borrelia species obtained	4
towards the end of	4
for interpretation of the	4
all sites of the	4
the similarity degree between	4
indicated by bold triangles	4
the influenza a virus	4
samples were identified in	4
and molecular epidemiology of	4
a small number of	4
data suggest that the	4
similar to each other	4
sequences of the reemerging	4
is yet to be	4
relative synonymous codon usage	4
infectious bronchitis virus variants	4
region of the s	4
to the host cell	4
within the s gene	4
ck ch scyb and	4
interaction between mutation pressure	4
the recombination detection program	4
no conflicts of interest	4
version of this article	4
canine respiratory coronavirus and	4
is known about the	4
of the alignment containing	4
is the similarity degree	4
n pairwise aa identity	4
of s and n	4
in south korea and	4
friendly biological sequence alignment	4
interpretation of the references	4
drug and vaccine design	4
the web version of	4
genetic diversity of sars	4
or missing data were	4
it was reported that	4
in cambodia and lao	4
may be infected by	4
study and those deposited	4
an in silico approach	4
bootstrap support from replications	4
the first molecular evidence	4
of the paramyxoviridae family	4
a new model for	4
of the references to	4
the nucleotide sequences of	4
this was not the	4
based on the different	4
under the accession numbers	4
be the result of	4
that strain ck ch	4
of the vp protein	4
numbers above the branch	4
ck ch ldl and	4
the severe acute respiratory	4
of the s coding	4
the alignment containing insertions	4
the course of the	4
the rscu value of	4
nsp and nsp genes	4
constructed using the maximum	4
and phylogenetic analysis of	4
are shown at each	4
usage pattern of the	4
r k g r	4
of avian influenza virus	4
the atlantic forest biome	4
our understanding of the	4
ck ch lhlj and	4
play an important role	4
of codon usage and	4
and ns of jev	4
of avian coronavirus infectious	4
characteristics of cases of	4
and the development of	4
in the g protein	4
the development of cardiomyopathy	4
was inferred using the	4
of these viruses in	4
reader is referred to	4
were located in the	4
o o f key	4
is referred to the	4
infectious bronchitis virus and	4
was calculated using the	4
of a new genotype	4
those deposited in genbank	4
and genomic characteristics of	4
susceptibility to chagas disease	4
epitopes were found to	4
ev and that of	4
has been used to	4
the innate immune system	4
the swedish national veterinary	4
basic local alignment search	4
in performance and usability	4
the major hexon variants	4
supplementary data associated with	4
and agg in the	4
old female balb c	4
analysis showed that the	4
the emergence of the	4
the full s coding	4
and the effects of	4
recent common ancestor of	4
a significant difference in	4
in the third site	4
plays an important role	4
of codon usage in	4
have been isolated in	4
flab fragments belonging to	4
of the whole coding	4
and evaluation of a	4
of respiratory syncytial virus	4
have been identified in	4
are indicated by bold	4
and other birds coronavirus	4
and maximum parsimony methods	4
in different host species	4
the s subunit was	4
pattern of ev is	4
in south east asia	4
numbers are shown after	4
this study are indicated	4
unique early polish variants	4
vitro and in vivo	4
basic reproduction ratio r	4
of the genome segments	4
and those deposited in	4
aku of s rrna	4
multiple sequence alignment software	4
epitope or a protein	4
nt in the s	4
the following accession numbers	4
in the context of	4
have been shown to	4
synonymous codon usage of	4
emergence of a novel	4
values are shown at	4
missing data were eliminated	4
in this figure legend	4
sequences are shown in	4
was constructed using the	4
of infectious bronchitis coronavirus	4
study are indicated by	4
pfu of b virus	4
sequence alignment software version	4
van dijk et al	4
was not the case	4
studies have shown that	4
of ev and that	4
a novel coronavirus from	4
sequenced in this study	4
strains of avian infectious	4
balb c mice were	4
the third site of	4
species obtained in the	4
g and p genotypes	4
and molecular characteristics of	4
strains based on the	4
infectious bronchitis viruses isolated	4
coronavirus of probable bat	4
the aim of this	4
of the rate of	4
the phylogenetic tree was	4
the ifng a t	4
of emerging infectious diseases	4
birds coronavirus avian infectious	4
influenza a h n	4
joining method of mega	4
ns and ns of	4
cause of severe acute	4
branch reflect bootstrap support	4
in humans and animals	4
with the help of	4
the genetic and antigenic	4
are likely to be	4
the feline nov strain	4
and aga in the	4
on the complete genome	4
in wild birds and	4
on the basis of	4
the genome of the	4
is closely related to	4
number of nucleotide substitutions	4
the relative genetic diversity	4
web version of this	4
it has been reported	4
deposited in genbank from	4
local alignment search tool	4
immunogenic vaccine peptide epitopes	4
of cases of novel	4
east region of india	4
epidemiological and clinical characteristics	4
with purified core protein	4
flab and s rrna	4
was found to possess	4
followed by cycles of	4
molecular characterization of infectious	4
the genomes of the	4
ongoing adaptation of sars	4
included in the analysis	4
as shown in table	4
infectious bronchitis virus infectious	4
of canine infectious respiratory	4
in the prefusion conformation	4
length vp amino acid	4
of gammacoronavirus and deltacoronavirus	4
third site of codon	4
from the present study	4
were detected in the	4
and natural selection from	4
with the canine strain	4
qiaquick gel extraction kit	4
sequences of borrelia species	4
borrelia burgdorferi sensu lato	4
amino acid substitutions were	4
ns protein the epitope	4
patients infected with hiv	4
in shaping the codon	4
were most closely related	4
of canine norovirus in	4
in the genome of	4
that can be used	4
in the g gene	4
genotypes of infectious bronchitis	4
the age of the	4
gene of infectious bronchitis	4
the sequence of the	4
the tree was constructed	4
the most commonly used	4
more than of the	4
the occurrence of recombination	4
may have originated from	4
at the time of	4
the start of the	4
of nucleotide substitutions per	4
ita and fd ita	4
tree was inferred using	4
h n influenza a	4
program for windows nt	4
the ck sudan ar	4
point mutations as substitution	4
characterization and pathogenicity of	4
bronchitis virus infectious bronchitis	4
of the hepatitis c	4
with this article can	4
the reader is referred	4
the relative synonymous codon	4
associated with this article	4
bronchitis virus isolates from	4
gene sequences obtained in	4
were eliminated from the	4
the number of cases	4
showed that of the	4
coronavirus pneumonia in wuhan	4
a detailed comparative analysis	4
in the online version	4
the clc genomics workbench	4
clinical characteristics of cases	4
recent years in china	4
which is consistent with	4
the same time scale	4
of novel coronavirus pneumonia	4
deletions or missing data	4
above the branch reflect	4
and clinical characteristics of	4
of probable bat origin	4
the interaction between mutation	4
data associated with this	4
class i binding epitopes	4
improvements in performance and	4
that strains ck ch	4
synonymous in the orf	4
were performed using the	4
analysis program for windows	4
total rna was extracted	4
infectious bronchitis coronavirus in	4
the branch reflect bootstrap	4
of the g gene	4
genome segments of rab	4
the development of diagnostics	4
molecular characterization of the	4
isolated from a dog	4
phylogenetic analysis was performed	4
the complete vp gene	4
the entire genome of	4
human influenza a virus	4
response in the host	4
sites of the alignment	4
the t mrca of	4
nucleotide sequences located at	4
swedish national veterinary institute	4
present study and those	4
based on the genetic	4
in the transmission of	4
rab was closely related	4
plays a major role	4
inferred using the neighbour	4
and analysis program for	4
of this virus in	4
sera titrated with purified	4
from bats to humans	4
was carried out using	4
in the united kingdom	4
female balb c mice	4
vp amino acid sequence	4
to be associated with	4
korean pedv strains are	4
of mutations in the	4
novel coronavirus pneumonia in	4
s gene of infectious	4
primer sequences are shown	4
we also found that	4
are shown in fig	4
for the whole coding	4
vp gene of rab	4
genome sequence analysis of	4
results suggest that the	4
in the innate immune	4
phylogenetic analysis revealed that	4
in genbank from different	4
effective number of codons	4
group is the similarity	4
the ratio of the	3
first intron of the	3
their unique mechanism of	3
occurrence of recombination events	3
genetic diversity of the	3
of orf of fcv	3
that is cleaved by	3
sequenced by the sanger	3
the first case of	3
in the duplicated region	3
of viral replication and	3
our selected peptides are	3
the antigenic relatedness between	3
the host cell receptor	3
sequence closest to the	3
observed in the s	3
of the ck sudan	3
have been observed in	3
were calculated using the	3
we speculate that the	3
like strain ck za	3
in guangdong province in	3
and serotype of infectious	3
with the highest hydrophilicity	3
mutagenesis studies from uniprot	3
can be used as	3
for the complete genome	3
coronavirus and other viruses	3
for a number of	3
sequences were submitted to	3
belonging to the fc	3
virus from the netherlands	3
we predicted the epitope	3
a high frequency of	3
molecular epidemiology of human	3
a target for vaccine	3
ends of the genome	3
inhibited by nsp proteins	3
of the ibv strains	3
the sequence closest to	3
of the complete genome	3
the genome of strain	3
biological sequence alignment editor	3
virus with a genome	3
pp a and pp	3
current situation and control	3
likelihood method based on	3
were considered to be	3
were assembled using seqman	3
the relationship between the	3
are needed to better	3
of japanese encephalitis virus	3
the probability of the	3
albeit with limited sequences	3
caption on next page	3
of individuals in each	3
associated with diarrhea in	3
the human immunodeficiency virus	3
new member of the	3
and ck sudan ar	3
a broad spectrum of	3
of influenza a virus	3
analysis of the capsid	3
the nucleotide sequence identities	3
overall codon usage of	3
maximum immunogenicity score of	3
ch lhlj vii was	3
the nucleotide sequences were	3
to a final concentration	3
in the lasergene software	3
codon adaptation of denv	3
in south korea in	3
subunit is responsible for	3
to colour in this	3
of the maximum likelihood	3
for virus origins and	3
the vp sequence was	3
genomes from subtype c	3
the objective of this	3
mutation points as substitution	3
the murine coronavirus spike	3
respiratory syncytial virus attachment	3
in sars coronavirus and	3
polymorphism analysis of infectious	3
the spike glycoprotein of	3
amplification refractory mutational system	3
methods to estimate maximum	3
collection of fecal samples	3
host immune and non	3
kb fragment at the	3
and to the canine	3
s subunit are very	3
the complete orf and	3
epidemiological dynamics of human	3
with human respiratory disease	3
in chinese horseshoe bats	3
ch lhlj vii and	3
is the most variable	3
were found to possess	3
a primer pair that	3
fraction of the total	3
and edited using the	3
the frequency of u	3
the d g mutation	3
region of infectious bronchitis	3
characterization and analysis of	3
isolated from a patient	3
more similar to bcov	3
that the distribution of	3
could be grouped into	3
proteins during the sars	3
from in vitro mutagenesis	3
likelihood phylogenetic tree was	3
infectious bronchitis virus genotypes	3
social factors may play	3
on ace and tmprss	3
introductions of the virus	3
in the feces of	3
to the emergence of	3
that the nsp proteins	3
the nsp gene was	3
the circulation of fekov	3
h strain of avian	3
in this study was	3
for vaccine and therapeutic	3
the references to colour	3
usage in sars coronavirus	3
to antagonize host innate	3
algorithms and methods to	3
mean age of the	3
amplicons of the expected	3
by a clinically proven	3
the human strain ecu	3
southwestern china in recent	3
the plots for strains	3
and s rrna genes	3
over a period of	3
of dengue virus type	3
no snps were detected	3
analysis was performed using	3
editor and analysis program	3
also observed in the	3
was used to predict	3
been deposited in genbank	3
ck ch lsc i	3
the coding sequences of	3
values for the whole	3
susceptibility to trypanosoma cruzi	3
miseq reagent kit v	3
in the development of	3
is an emerging genotype	3
from the national center	3
between urban and sylvatic	3
revealed the presence of	3
the one step rt	3
the porcine epidemic diarrhea	3
accession numbers for the	3
emergence and evolution of	3
i and sars coronaviruses	3
the existence of a	3
rab clustered in the	3
sequences were assembled using	3
de groot et al	3
for ser were chosen	3
to each other and	3
g mutation in sars	3
into s and s	3
that f protein is	3
tmprss and is blocked	3
it is important for	3
the swedish research council	3
d g in s	3
of a g p	3
with a prevalence rate	3
respiratory syncytial virus a	3
it should be noted	3
using the megalign program	3
in the following season	3
four major hexon variants	3
identified in five proteins	3
of the vp and	3
index and connectivity index	3
prevalence of the hrsv	3
detection and genetic characterization	3
have been identified as	3
of the coding sequences	3
that belong to the	3
is associated with the	3
the effect of the	3
be used as a	3
codon usage bias and	3
department of omics analysis	3
only one of the	3
the number of nucleotide	3
the number of mutations	3
constellation of this strain	3
detailed comparative analysis on	3
partial d gene and	3
china in recent years	3
such as ck ch	3
and the existence of	3
functional receptor for the	3
belonging to the same	3
of the coronavirus study	3
r k and g	3
difference in the distribution	3
the evolution of the	3
vp is the most	3
synthesized in the natural	3
synonymous codon usage patterns	3
of the viral genome	3
five proteins of jev	3
observed near the breakpoint	3
situation and control measures	3
detected in healthy dogs	3
sequence alignment editor and	3
those with chagasic cardiomyopathy	3
were found to have	3
usage bias in the	3
for the selection of	3
were collected from the	3
would like to acknowledge	3
molecular characterization and pathogenicity	3
novel coronavirus associated with	3
of the h strain	3
evolutionary genetics analysis using	3
by amplification refractory mutational	3
in pigs and humans	3
to the h vaccine	3
of this polymorphism on	3
were downloaded from the	3
alignment editor and analysis	3
strains available in the	3
is a member of	3
strains of infectious bronchitis	3
the genome segments of	3
profiles retrieved from the	3
of mice starting at	3
was most closely related	3
while they were not	3
report of the international	3
have designed functional sirnas	3
a genome size of	3
of amino acid changes	3
ecological processes and population	3
analysis of the full	3
usage of the orf	3
blocked by a clinically	3
respiratory coronavirus and canine	3
in the untranslated region	3
order to find the	3
of the amino acid	3
sequence analysis of a	3
were performed with the	3
fecal samples were collected	3
the complete genomes of	3
the genomic and epidemiological	3
amino acid composition and	3
viral entry to host	3
terminal third of the	3
to determine the complete	3
the fecal samples were	3
host exists in the	3
for min and then	3
of ev is a	3
ifng a t polymorphism	3
k and g r	3
and methods to estimate	3
in wild aquatic birds	3
was nt in length	3
strains were almost identical	3
spread of the virus	3
identity with those of	3
it has been observed	3
similarity degree between bstvs	3
near the breakpoint sites	3
new respiratory disease of	3
porcine epidemic diarrhoea virus	3
four ibv strains was	3
to possess the highest	3
the genomic diversity of	3
coronavirus from patients with	3
of rapidly evolving viruses	3
in this study and	3
the spread of jev	3
is a determinant of	3
development of cardiomyopathy is	3
on the same time	3
development and use of	3
scyb and ck ch	3
new algorithms and methods	3
selected peptides are highlighted	3
enc values for the	3
the size of the	3
with limited sequences support	3
to be further investigated	3
circulated in the field	3
genbank under the following	3
and then cycles of	3
of strain b was	3
genomic characterisation and epidemiology	3
as part of this	3
is described by the	3
studies have implicated cytokine	3
genomic sequences of the	3
s gene and orf	3
rotavirus strain detected in	3
em structure of the	3
one of the factors	3
polymorphism may be involved	3
genbank under accession numbers	3
nt deletion in the	3
has been shown to	3
in west nile virus	3
lao pdr and cambodia	3
a previous study reported	3
and the complete orf	3
virus codon usage bias	3
hepatitis c virus in	3
maximum likelihood method based	3
as well as a	3
and absence of homologs	3
within the s subunit	3
using reverse vaccinology approach	3
analysis of the hrsv	3
sars coronavirus and other	3
were first identified in	3
has been found in	3
to be able to	3
on the nucleotide sequences	3
and likely involves several	3
regulates replication fidelity and	3
and vp genes of	3
in presence of reference	3
a systematic review and	3
codon usage of orf	3
by ribosomal frame shift	3
in the fc cluster	3
we have designed functional	3
of origin of the	3
of the genetic diversity	3
type strain ck ch	3
virus infectious cdna clone	3
dogs and cats in	3
trypanosoma cruzi infection in	3
was shown to be	3
and insertion and snps	3
rscu value of each	3
the inferred age of	3
role of bats in	3
the most closely related	3
cell entry depends on	3
optimal codons with any	3
sequences in the genbank	3
emergence of new variants	3
isolates with the homoplasy	3
using the muscle algorithm	3
has been reported that	3
a novel coronavirus associated	3
nonsynonymous variants including loss	3
the first intron of	3
colour in this figure	3
that geographic and social	3
highly pathogenic avian influenza	3
the ck ch lhlj	3
are very tolerant of	3
to time and regions	3
the total number of	3
evidence of intersubtype recombination	3
transcriptional and translational levels	3
the h strain of	3
with those of the	3
has been shown in	3
of reference sequence from	3
the s glycoprotein of	3
in a frame shift	3
nested pcr based on	3
all pcr products were	3
of a new species	3
polyprotein that is cleaved	3
scores and total net	3
together with the canine	3
for estimating evolutionary rates	3
nucleotide substitutions site year	3
the nsp protein of	3
in influenza a virus	3
also detected in the	3
a partial gene sequence	3
a single amino acid	3
the cipres science gateway	3
vp gene of sccd	3
the netherlands as a	3
most closely with the	3
by the sanger method	3
that of host cell	3
to that of host	3
genotype of infectious bronchitis	3
of canine parvovirus type	3
of host immune and	3
of the genetic code	3
respiratory disease in china	3
at the same time	3
strains identified in south	3
m above sea level	3
method based on the	3
to find the mutation	3
s glycoprotein of sars	3
vaccine and therapeutic development	3
affecting the codon usage	3
as the major hexon	3
of the analyzed strains	3
with more natural habitats	3
analysis of recombination patterns	3
of the evolution of	3
a close evolutionary relationship	3
the seven hvrs of	3
are listed in table	3
virus origins and receptor	3
likely involves several genes	3
the ibv ck sudan	3
high frequency of recombination	3
of cardiomyopathy is complex	3
in lao pdr and	3
shown in table s	3
patients and those with	3
nsp proteins from hcov	3
and influencing factors in	3
from patients with pneumonia	3
synthesis of host immune	3
cruzi infection and the	3
the profiles retrieved from	3
in camels in china	3
closely related to those	3
immune response in the	3
indicating that villages were	3
may be due to	3
the translated proteins of	3
subgroups a and b	3
that the interaction between	3
with acute respiratory illness	3
to evade host innate	3
ibvs from southwestern china	3
a period of years	3
previous studies have implicated	3
the gc s values	3
ncov spike in the	3
cytokine and chemokine genes	3
use of the h	3
the pathogenic role of	3
which corresponds to the	3
assessed in wild birds	3
were carried out using	3
peptide epitopes from the	3
synonymous mutations involved neutral	3
it is believed that	3
evolution and emergence of	3
samples were positive for	3
between strains ck ch	3
titrated with purified core	3
that there are no	3
the corresponding amino acid	3
evidence of recombination in	3
at position of the	3
amino acids involved in	3
with evidence of intersubtype	3
the primer sequences are	3
from the democratic republic	3
of the presence of	3
characterisation and epidemiology of	3
replication fidelity and diversity	3
diversity of ev strains	3
and genomic characterization of	3
phylogenetic analysis of full	3
polish ibv strains showed	3
clinically proven protease inhibitor	3
proteins a and b	3
the first on genotype	3
was inhibited by nsp	3
gene and the complete	3
a novel bkov strain	3
other viruses in the	3
the bat origin of	3
our data suggest that	3
rna dependent rna polymerase	3
of evolutionary and ecological	3
in red in table	3
the performance of phyml	3
carrying large numbers of	3
infectious bronchitis virus are	3
to the sequences of	3
ninth report of the	3
ebola virus vp protein	3
trees were generated using	3
detection and analysis of	3
the remaining flab fragments	3
sequence analysis of infectious	3
be one of the	3
clustered most closely with	3
were very similar to	3
emergence of genomic diversity	3
suppresses host protein synthesis	3
been assessed in wild	3
infected cd t cells	3
on partial d gene	3
of unique aa mutations	3
a more important role	3
codon usage bias is	3
deletion and insertion and	3
without any net charge	3
spike in the prefusion	3
varied according to time	3
confirmed the presence of	3
human respiratory disease in	3
member of the genus	3
time evolution of the	3
the coronavirus study group	3
hexon variants of hadv	3
asymptomatic patients and those	3
and j o u	3
infection with b virus	3
pressure and natural selection	3
pcr based on the	3
s subunit is responsible	3
peptide vaccine against jev	3
third of the g	3
by the presence of	3
a and pp ab	3
within the genogroup gvi	3
characterization of a bovine	3
in the department of	3
pedv strains isolated in	3
infection and the development	3
patients and healthy controls	3
on mutagenesis studies from	3
of the total variation	3
p group a rotavirus	3
strains identified in this	3
to their geographical regions	3
multiple sequence alignment with	3
of fecal samples from	3
genotype and serotype of	3
method for the detection	3
were not detected in	3
the s gene revealed	3
molecular evidence for the	3
phylogeny and interspecies jumping	3
type genomes from subtype	3
the sars epidemic in	3
separate branch of the	3
bats are associated with	3
patients with pneumonia in	3
amoy gardens housing complex	3
loss of genetic diversity	3
part of this study	3
a close genetic relationship	3
dynamics of human influenza	3
of the capsid gene	3
nt sequence identity with	3
tolerant of amino acid	3
clustered according to their	3
by the international committee	3
it is likely that	3
that some of the	3
were used as references	3
starting at days post	3
and other viruses in	3
the case of the	3
from the netherlands as	3
is a mixture of	3
a review of the	3
limited understanding of the	3
the significance of the	3
the corresponding amino acids	3
might be related to	3
was determined by the	3
genetic diversity of a	3
highlight the potential of	3
a g p was	3
and ck ch scyb	3
based on mutagenesis studies	3
or directly from hunters	3
characterization of a canine	3
new species of kobuvirus	3
than c and g	3
from the presence and	3
and epidemiology of novel	3
depends on ace and	3
positive samples were detected	3
shown to be of	3
diagnostics and vaccines against	3
netherlands as a vaccine	3
type i ifn response	3
was constructed with the	3
patients with acute respiratory	3
aus cat g p	3
complete orf and orf	3
coronavirus associated with severe	3
classification of group a	3
the frequency of the	3
the extent of matching	3
natural selection plays a	3
was also found in	3
the relative frequencies of	3
from the profiles retrieved	3
absence of homolog proteins	3
the s protein gene	3
the human ifng gene	3
in the number of	3
and s subunits of	3
ten polish ibv strains	3
pcr products were sequenced	3
sequence identity with each	3
editing of the viral	3
initiative on sharing all	3
based peptide vaccine against	3
is believed that the	3
comparative genome analysis and	3
in shaping codon usage	3
absence of homologs of	3
was constructed using mega	3
the middle east respiratory	3
group i and sars	3
cruzi infection in mice	3
results indicate that rab	3
used in a gene	3
required to understand the	3
of the virus population	3
rrna gene sequences of	3
of ck ch lhlj	3
of evolution of ev	3
was shown in table	3
should be noted that	3
in genbank under accession	3
amino acid composition of	3
trna pools than bstvs	3
were included in this	3
downloaded from the national	3
host protein synthesis by	3
it is essential to	3
of the hexon gene	3
be explained by the	3
number of aliphatic amino	3
is responsible for the	3
entry into host cells	3
and the codon contents	3
national institute of health	3
role in shaping the	3
tc aus cat g	3
was not significantly different	3
dogs with signs of	3
the s subunit is	3
amino acid identities with	3
new coronavirus associated with	3
recurrent mutations in sars	3
fragments belonging to the	3
have been isolated from	3
with the presence of	3
indicates the number of	3
the beginning of the	3
natural course of hcv	3
than of the population	3
a new genotype and	3
identified in the present	3
antigenicity of the sars	3
fragmentation index and connectivity	3
tuning translation kinetics selection	3
on sharing all influenza	3
cases with respiratory failure	3
of the translated proteins	3
of the remaining non	3
the whole genome of	3
at the amino acid	3
according to time and	3
evidence for the circulation	3
in the pathogenesis of	3
represent a novel bkov	3
showed that all the	3
selection from host exists	3
the megalign program in	3
democratic republic of congo	3
and use of the	3
identical amino acid substitutions	3
the exception of the	3
a new member of	3
of a recombination event	3
global initiative on sharing	3
with a final extension	3
a new species of	3
the effects of selection	3
of the polymerase complex	3
considered to be antigenically	3
usage patterns in west	3
the molecular characteristics of	3
and chemokine genes in	3
objective of this study	3
on the negative side	3
necessary to continue with	3
sequences of polish ibv	3
the change in nucleotide	3
review of the history	3
the national veterinary institute	3
on the phylogenetic tree	3
the time evolution of	3
previous study reported that	3
belonging to genotype c	3
to direct sequencing using	3
the emergence and evolution	3
nt duplication in the	3
were higher than those	3
an epitope or a	3
the city of uppsala	3
binding domain of the	3
bronchitis virus genotypes in	3
and clinical features of	3
influencing the evolution of	3
a significant role in	3
cov may have originated	3
identification and characterization of	3
hydrophilicity scores and total	3
between strain ck ch	3
from a child with	3
circulation of fekov in	3
in domestic cats in	3
and absence of homolog	3
which were closely related	3
was performed by the	3
plays a significant role	3
patterns in west nile	3
comparative analysis on the	3
with those of other	3
used to construct the	3
acute respiratory syndrome coronaviruses	3
morbidity and mortality in	3
prevalence and genomic characteristics	3
influence of this polymorphism	3
identified in south korea	3
likelihood phylogenetic tree based	3
of the u residues	3
alignment of the sars	3
in ev coding sequence	3
of the sars epidemic	3
found to be more	3
in the prevalence of	3
on the positive side	3
subunit are very tolerant	3
of a novel parvovirus	3
discovery of a novel	3
our results showed that	3
phylogenetic trees were generated	3
of group i and	3
the estimated t mrca	3
ifng t a genetic	3
the topology of the	3
new genotype and serotype	3
infected seroconverters in india	3
studies from uniprot protein	3
out of unique aa	3
implications for virus origins	3
the maximum likelihood phylogeny	3
cai values for the	3
were separated by sds	3
by next generation sequencing	3
between asymptomatic patients and	3
genetics analysis using maximum	3
the respiratory syncytial virus	3
the results showed that	3
processes and population dynamics	3
was identified in the	3
of group i coronaviruses	3
and is blocked by	3
based on partial d	3
is blocked by a	3
in all of the	3
references to colour in	3
that jz and cc	3
taipei municipal hoping hospital	3
target for vaccine and	3
were constructed using the	3
in the form of	3
molecular epidemiology of enterovirus	3
commonly used vaccine strains	3
a novel vp genotype	3
epitopes for peptide vaccine	3
determined by using the	3
subjected to direct sequencing	3
and analysis of recombination	3
in dogs and cats	3
about the prevalence of	3
analysis was carried out	3
implicated cytokine and chemokine	3
to that of the	3
the first isolation of	3
sequencing was performed with	3
at nt in the	3
be involved in susceptibility	3
of norovirus genogroup iv	3
ace and tmprss and	3
patterns in virus genomes	3
a genetic polymorphism may	3
mice starting at days	3
trees were constructed using	3
with canine infectious respiratory	3
the on genotype was	3
including the partial rdrp	3
design and evaluation of	3
evade host innate immunity	3
from amino acid position	3
the highly pathogenic sars	3
recombination patterns in virus	3
based on s rrna	3
the democratic republic of	3
with pneumonia in china	3
aliphatic amino acids in	3
bar indicates the number	3
across the whole genome	3
epitope loaded peptide vaccine	3
cats and dogs may	3
the s gene sequence	3
the dynamics of the	3
the three reemerging korean	3
molecular evolution of the	3
of infectious bronchitis coronaviruses	3
virus type genomes from	3
jz and cc shared	3
included in this study	3
not significantly different between	3
can be found in	3
related to the canine	3
has been observed that	3
to other fekov strains	3
intron of the human	3
for the amplification of	3
was also detected in	3
sera of ck ch	3
apparently new respiratory disease	3
vaccine peptide epitopes from	3
of newcastle disease virus	3
of the on genotype	3
on the overall codon	3
infectious bronchitis virus the	3
rna virus and its	3
associated with human respiratory	3
have been discovered in	3
at the national veterinary	3
bronchitis virus in western	3
bronchitis virus from the	3
can be useful for	3
are one of the	3
bats are natural reservoirs	3
defective interfering rna replication	3
at the swedish national	3
of the number of	3
viruses in the nidovirales	3
sequences were more closely	3
information about the prevalence	3
pcr was performed using	3
of recombination patterns in	3
genetic polymorphism may be	3
further studies are required	3
coronavirus associated with human	3
the demographic history of	3
that the emergence of	3
it may be related	3
from host exists in	3
is necessary to continue	3
model of nucleotide substitution	3
for the same amino	3
a functional receptor for	3
a recombinant vaccinia virus	3
endemic korean pedv strains	3
on an independent branch	3
three open reading frames	3
further understanding of the	3
the vp gene was	3
developed from the profiles	3
host innate immunity and	3
genome sequence of the	3
supplemented with fetal bovine	3
and tmprss and is	3
the results of this	3
immunodeficiency virus type genomes	3
s subunit of the	3
cat g p rva	3
the spike gene of	3
the s subunit are	3
estimate the time of	3
of the international committee	3
of the human ifng	3
to the codon usage	3
entry depends on ace	3
of foot and mouth	3
the presence of antibodies	3
the mean age of	3
this study using the	3
virus in western africa	3
and antigenicity of the	3
ev strains based on	3
presence of reference sequence	3
genbank under the accession	3
to the generation of	3
forest fragmentation index and	3
codon usage in sars	3
with the host receptor	3
were incubated for h	3
reference sequence from ncbi	3
epitopes from the hexon	3
analyses were performed using	3
sequence identities of the	3
overall codon usage patterns	3
have implicated cytokine and	3
of patients infected with	3
full genomic analysis of	3
with fetal bovine serum	3
duplication in the g	3
suggest that the ifng	3
the relationship of the	3
immune sera of ck	3
are natural reservoirs of	3
role in the evolution	3
introduced into korea from	3
strains circulating in china	3
g p group a	3
and five or six	3
of borrelia burgdorferi in	3
ev is a mixture	3
most commonly used vaccine	3
be a result of	3
gene of rabies virus	3
previous endemic korean pedv	3
in the c gene	3
the first two axes	3
norwalk virus infectious cdna	3
natural reservoirs of sars	3
based on the partial	3
strain of avian infectious	3
transmission of the virus	3
length human immunodeficiency virus	3
and epidemiological dynamics of	3
of influenza a viruses	3
a final extension step	3
helvum in zambia have	3
was located on the	3
between mutation pressure from	3
to the ace receptor	3
to the sars coronavirus	3
a consensus sequence is	3
south korea and italy	3
portion of the genome	3
the key determinant of	3
identity with each other	3
human g p rotavirus	3
t mrca of hiv	3
to design functional sirnas	3
mutation pressure from virus	3
were the most frequent	3
bats middle east respiratory	3
from march to april	3
and the emergence of	3
mutation pressure and natural	3
this study aimed to	3
of homologs of ten	3
of human adenovirus type	3
of the complete polyprotein	3
and deduced amino acid	3
the amino acid level	3
a new coronavirus associated	3
analysis of the vp	3
nsp genes of rab	3
virus in wild birds	3
for a large number	3
be the key determinant	3
is a functional receptor	3
segments of rab were	3
with pfu of b	3
could be used in	3
and middle east respiratory	3
was located at nt	3
in contrast to the	3
the vaccine strain h	3
coding region sequences of	3
the s protein is	3
assessing the performance of	3
analysis using maximum likelihood	3
study showed that the	3
analysis on the overall	3
strains belonging to the	3
on the development of	3
origins and receptor binding	3
for the treatment of	3
was also observed in	3
in this study using	3
very tolerant of amino	3
retrieved from the presence	3
the same type of	3
the nsp and nsp	3
ch scyb and ck	3
one of the highest	3
epidemiology of novel coronavirus	3
and single nucleotide polymorphism	3
novel coronavirus from patients	3
serological evidence of bat	3
that of its host	3
hvr encoding regions of	3
and codon usage bias	3
sirnas from the conserved	3
between crcov and bcov	3
from the hexon protein	3
origin of the reemerging	3
single nucleotide polymorphism analysis	3
nj and pars trees	3
epidemiology of infectious bronchitis	3
sequence of ev and	3
the ha segment of	3
genetic characteristics of the	3
located at nt in	3
formed a separate branch	3
of the virus and	3
detection of norovirus in	3
a clinically proven protease	3
highlighted in red in	3
that the ifng t	3
was isolated from the	3
on the s coding	3
codon usage patterns in	3
of a strain of	3
nucleotide polymorphism analysis of	3
infectious bronchitis viruses with	3
bias of the fcv	3
t a genetic polymorphism	3
us to understand the	3
maximum likelihood phylogenetic tree	3
analyses performed on the	3
and genetic diversity of	3
plays a more important	3
other species of orthocoronavirinae	3
that the b strain	3
the h vaccine strain	3
genomic and single nucleotide	3
of the host population	3
and vaccines against sars	3
into the host cell	3
diversity and evolution of	3
infectious bronchitis virus strains	3
genomic and epidemiological dynamics	3
relationship of the translated	3
a major cause of	3
and those with chagasic	3
significantly higher than that	3
in the republic of	3
was higher than that	3
in the absence of	3
of group a rotaviruses	3
identity with that of	3
molecular characterization of avian	3
degree between bstvs and	3
with qx and qx	3
to the genus orthoreovirus	3
the rest of the	3
of open reading frame	3
is the lack of	3
that has been associated	2
produce several nonstructural proteins	2
located in the predicted	2
encephalitis virus japanese encephalitis	2
positively selected sites in	2
on the partial d	2
calicivirus isolated from a	2
the regulation of rna	2
multiple sequence alignment program	2
syncytial virus detected in	2
the feline strain cat	2
to suggest that the	2
of a novel vp	2
stranded rna viruses belonging	2
feces of cats with	2
we would like to	2
included the seven hvrs	2
the natural reservoirs of	2
than that of nstvs	2
pattern was observed with	2
fekov polyprotein genomes were	2
among the human scovs	2
performed with miseq reagent	2
permit was obtained from	2
like viruses in wild	2
with host ribosomal s	2
in malaysia isolation of	2
in specific pathogen free	2
to antigenic domains on	2
identify the origin of	2
identical to the us	2
in the progression of	2
characteristics of the virus	2
sizes and migration rates	2
under the following accession	2
and is a popular	2
rab clustered most closely	2
with the conserved position	2
codon usage in yeast	2
gii strains being the	2
with signs of disease	2
ibv strain ck ch	2
of the total epitope	2
region encompassing nucleotides to	2
novel severe acute respiratory	2
which associated with nosocomial	2
be used to estimate	2
instituto nacional de salud	2
bronchitis virus in the	2
insertion of amino acids	2
disease in this colombian	2
as a member of	2
the strains from the	2
that of human strain	2
the similarity index d	2
usage of the fcv	2
protein of human coronavirus	2
characterization of the first	2
coronavirus isolated from a	2
of generic primers used	2
to better understanding the	2
by grants from the	2
genotypes have been identified	2
differences in the expression	2
codon usage of a	2
human noroviruses molecular detection	2
has shown that the	2
infect a broad range	2
the highest nucleotide and	2
insertion which can result	2
proteins are the major	2
u was the most	2
samples were stored at	2
of viral virulence by	2
expression and stability of	2
in the recovery phase	2
is a popular location	2
information can be useful	2
abi xl dna analyzer	2
scmy and ck ch	2
very similar to each	2
to cover a wide	2
and recombination in canine	2
characteristics of the complete	2
most frequent in south	2
epitopes were identified to	2
broadly reactive reverse transcription	2
were screened using a	2
six genes and orfs	2
genotyped for functional single	2
and designated jz and	2
districts of west bengal	2
molecular diagnostics department at	2
season from may to	2
estimation of migration rates	2
influenza a virus infection	2
lineage share out of	2
the genome of a	2
infected with b virus	2
cai values for humans	2
codons are used equally	2
cycles of incubation at	2
was first detected in	2
was to describe the	2
vaccine formulation and development	2
matching to fit the	2
of the family coronaviridae	2
polymorphism and chagas disease	2
containing of the polymorphisms	2
tissue tropism and induction	2
conserved features of genome	2
to determine the potential	2
that of coding sequences	2
phylogenetic analyses of the	2
solid tumors and matched	2
shaped by human genomic	2
infect humans and animals	2
in the patients relative	2
the degree of similarity	2
diarrhoea virus and transmissible	2
have no known competing	2
number of mutations per	2
new perspective on the	2
s and r k	2
with default values were	2
with fekov reference strains	2
optimization of generic primers	2
were detected as bkov	2
the rate of molecular	2
the rate of poliovirus	2
of sequences with multiple	2
considered to be a	2
biospecimen collection source site	2
both transcriptional and translational	2
genomic characteristics of bovine	2
is responsible for binding	2
the notion that the	2
sequences carrying large numbers	2
patients infected with sars	2
the on os subgenotype	2
evolutionary analysis of the	2
a scale free contact	2
from a reassortment of	2
to the nsp gene	2
in the orf gene	2
samples have belonged to	2
region of polish ibv	2
the media briefing on	2
diversity of rna viruses	2
on infectious bronchitis virus	2
the evolution of ev	2
and n proteins were	2
a single gene sequence	2
interactions between humans and	2
was used to amplify	2
have also been detected	2
the phylogenetic trees were	2
in japan improved method	2
epidemiology of avian infectious	2
to the rest of	2
the pcr conditions were	2
chinese horseshoe bats as	2
virus classification and nomenclature	2
serotype and neutralization specific	2
and human coronavirus oc	2
infectious bronchitis virus is	2
with a genome backbone	2
the geographic origin of	2
factors in japanese encephalitis	2
the positive signal observed	2
as a negative control	2
like avian infectious bronchitis	2
strain has been directly	2
codon usage variation among	2
between patients and healthy	2
method with the jukes	2
are shown in bold	2
to a ca repeat	2
and inexpensive method for	2
fatality rate global spread	2
indicate that different coronaviruses	2
associated with nosocomial infection	2
factor used by the	2
to see the evolution	2
roles in the emergence	2
were collected from dairy	2
regions of polyprotein gene	2
ns protein contained a	2
position d were almost	2
population size of the	2
and induction of protective	2
in asia and worldwide	2
similar to sequences from	2
of the inevitable interaction	2
in the processes of	2
used in this work	2
a major public health	2
of each octapeptide b	2
described in wille et	2
study were clustered into	2
at nodes indicate bootstrap	2
screened using a broadly	2
from the coronavirus disease	2
might alter the interaction	2
ncov nonstructural protein b	2
ibv strains detected in	2
detected in a child	2
no evidence of recombination	2
the eight sequences and	2
middle of the s	2
h n influenza viruses	2
viral proteins of ev	2
the b strain is	2
in the alignment as	2
and genotypes between asymptomatic	2
n influenza a epidemic	2
frame relative to the	2
the immune epitope database	2
ba genotype of hrsv	2
we evaluated the samples	2
characteristics of rp patients	2
observed in and of	2
and lpv rtv in	2
of the most significant	2
be lower than that	2
the heat shock method	2
with diarrhea in south	2
of the present study	2
antigenic characteristics of ibvs	2
that most of the	2
on the complete polyprotein	2
subjected to blast search	2
and the debris were	2
the intestine of a	2
virus titer was determined	2
are closely related to	2
estimate large phylogenies by	2
of sars coronavirus spike	2
migrate up to km	2
are often used to	2
the peptide segments identified	2
healthy controls from a	2
the h n virus	2
and its evolutionary origin	2
the flab fragments belonging	2
from an infant in	2
of genetic diversity in	2
detected across the entire	2
bronchitis virus molecular analysis	2
been recently found in	2
using the online tool	2
declare that there are	2
fecal viral flora of	2
norovirus in dogs with	2
between bats and humans	2
resulted in missense mutations	2
rotavirus strains the result	2
to the stop codon	2
of scientific and technological	2
can result in an	2
and one in the	2
of cats with diarrhea	2
from a gastroenteritis outbreak	2
support the notion that	2
the mammalian order artiodactyla	2
vp protein norovirus recombination	2
strains of the gi	2
in wille et al	2
of rva in dogs	2
related to hiv infection	2
followed by ndv infection	2
of the most common	2
of viruses to human	2
for viral entry to	2
is based on the	2
make the tree clearer	2
genome of the reemerging	2
isolated from a young	2
and sequences from aksu	2
in accordance with their	2
severity of the disease	2
orfs a and b	2
the lack of cheap	2
a virus ns protein	2
the hiv aids pandemic	2
that villages were small	2
from this region is	2
of ebola virus disease	2
samples were detected in	2
respiratory syndrome coronavirus protein	2
reads were assembled using	2
the b cell epitope	2
this study did not	2
in enterovirus virus and	2
polymorphism in chagas disease	2
its relation to evolution	2
cytomegalovirus m and m	2
results of this study	2
are required to clarify	2
values for the sylvatic	2
other lineage b betacoronaviruses	2
of a novel coronavirus	2
memoir of severe acute	2
chain reaction survey of	2
and vp genes were	2
bronchitis virus in poultry	2
u test to compare	2
and recurrent mutations in	2
reassignment to the genus	2
the third index case	2
bronchitis viruses isolated during	2
orf encodes a polyprotein	2
genomic diversity of the	2
a novel group of	2
to the reference sequence	2
selection from its host	2
of the genus betacoronavirus	2
coronavirus from animals in	2
amplified pcr products were	2
the detection of b	2
on lyme disease in	2
coronavirus pathogenesis and the	2
a limited number of	2
rely on the orf	2
in different geographical regions	2
in the nidovirales the	2
analysis clearly differentiates highly	2
with that of the	2
gene indicates that the	2
are more similar to	2
human infection with a	2
a low complexity region	2
on the predicted b	2
three different positive sera	2
of cird in sweden	2
the canine nov strain	2
reported in this paper	2
viral capsid protein vp	2
into the prevention and	2
nucleotide and deduced amino	2
closely related to an	2
and fd ita were	2
for f in western	2
a potential source of	2
to bcov than to	2
acid differences in the	2
on the miseq instrument	2
covs from adjacent provinces	2
the dose of the	2
van niekert and venter	2
as ck ch scyb	2
characterization of a mammalian	2
urbanization is intensifying worldwide	2
from our study were	2
in the adaptation of	2
method of reed and	2
was performed using graphpad	2
causes endoplasmic reticulum stress	2
comparative studies of nucleotide	2
genome of each of	2
estimating fifty percent endpoints	2
the possibility of human	2
the different epidemic areas	2
and the supernatant was	2
primers used to amplify	2
epitope of the duplicated	2
a rotavirus isolated from	2
orf b strongly antagonizes	2
one of the major	2
of rapidly evolving infectious	2
cases around the globe	2
and trna pools than	2
reason is the lack	2
into a triangle named	2
detection of norovirus and	2
human aichi virus and	2
to human noroviruses molecular	2
highly divergent dengue virus	2
discrepancy of the synonymous	2
see the evolution of	2
infections caused by viruses	2
estimating evolutionary rates of	2
museum of natural history	2
in the previous section	2
of virus host shifts	2
based on the hypervariable	2
rna viruses in the	2
the recombination analysis showed	2
of cpe was stable	2
susceptibility of different vertebrate	2
acid composition and sequence	2
human p rotavirus strains	2
some synonymous codons in	2
sequences of the genome	2
shift in bat sarsr	2
natural history to ring	2
taxonomy and the international	2
the genome sequence of	2
sequences for viral proteins	2
of the data given	2
was performed by rt	2
lineages with a genome	2
the total age of	2
antigenic variation of the	2
in bstvs may involve	2
cluster with other similar	2
genetic sublineages of the	2
virus and the effects	2
are classified into four	2
is a highly prevalent	2
the n protein is	2
from the aa sequence	2
to determine the evolutionary	2
and is one of	2
plots as well as	2
alter the interaction of	2
most variable immune determinant	2
to enter the host	2
genome analysis and phylogenetic	2
virus to the homologous	2
origin of human sars	2
nucleotide contents of ev	2
conserved position d were	2
submitted to genbank under	2
both humans and animals	2
bioinformatic analysis revealed that	2
virus from sudan reveals	2
all the fecal samples	2
in an epitope or	2
shift from amino acid	2
encoded protease to produce	2
despite being detected in	2
between precise and functional	2
had a history of	2
cluster tree developed from	2
in samples collected from	2
the next epidemic wave	2
and total net charges	2
critical for attachment in	2
coronaviruses have similar structures	2
the epidemiological and evolutionary	2
orf overlap evidence for	2
host may be infected	2
the flagellin b gene	2
were considered for subsequent	2
protein of avian coronavirus	2
a web server for	2
to the rscu value	2
as well as snps	2
specific epitope within the	2
young dogs complete genomic	2
observed variants out of	2
is a major cause	2
norwalk virus binds to	2
of nipah virus using	2
a aa protein with	2
virus in great britain	2
below the specified threshold	2
of jev were identified	2
length of the branch	2
canine noroviruses interact with	2
immunopathogenesis of severe acute	2
genome of ten polish	2
proteins were separated by	2
was used to analyze	2
japanese encephalitis vaccines japanese	2
ldl and ck ch	2
was conducted in two	2
transmitted the virus to	2
af difference across populations	2
genetic diversity of bovine	2
a comparative analysis of	2
than that for the	2
genetics of virus host	2
a wide zone in	2
spike protein is a	2
separate branch on the	2
feline strain cat nov	2
infectious bronchitis virus circulating	2
in rabbits in the	2
within the s protein	2
contains strains of ln	2
the most frequent being	2
as this information can	2
immunodeficiency virus type vpr	2
relationships which may be	2
were also detected in	2
this study provides the	2
on chagas disease progression	2
in the cipres science	2
the apical beta barrel	2
included in the alignment	2
available in the online	2
cleaved by the virus	2
of the total synonymous	2
since this is the	2
and number of aliphatic	2
nucleotide identity of the	2
the evolution and development	2
g i model and	2
genome classification of group	2
the herd immune status	2
the first and third	2
by the heat shock	2
bronchitis virus replication and	2
the partial g gene	2
indicated that fekov strains	2
of f coding sequence	2
strains cluster with other	2
was collected from the	2
q n at mutated	2
experimental trypanosoma cruzi infection	2
function for the vp	2
or as a result	2
transmission of hepatitis c	2
and the positive rate	2
number of patients infected	2
with respect to the	2
alignment map format and	2
like coronaviruses in horseshoe	2
than that of h	2
using the gene runner	2
emergence of a new	2
and ck ch scls	2
of ev strains and	2
in animal and plant	2
calculated to implement a	2
the ifng genotype a	2
biocircos and bar plots	2
the crude mortality rate	2
sequence and phylogenetic analysis	2
fusion and entry into	2
conservation and public health	2
detection by reverse transcriptase	2
using the mafft algorithm	2
genjet pcr purification kit	2
model the interaction of	2
epidemiology and cause of	2
specific primer pair jv	2
h n pdm influenza	2
ygdd of the rna	2
a major pathogenicity factor	2
structure and function of	2
had a higher kobuvirus	2