key: cord-0983482-wqvoqf0a
authors: Hausfater, Pierre; Boutolleau, David; Lacombe, Karine; Beurton, Alexandra; Dumont, Margaux; Constantin, Jean-Michel; Ghosn, Jade; Combes, Alain; Cury, Nicolas; Guedj, Romain; Djibré, Michel; Bompard, Rudy; Mazerand, Sandie; Pourcher, Valérie; Gimeno, Linda; Marois, Clémence; Teyssou, Elisa; Marcelin, Anne-Geneviève; Hajage, David; Tubach, Florence
title: Cumulative incidence of SARS-CoV-2 infection and associated risk factors among frontline health care workers in Paris: the SEROCOV cohort study
date: 2022-05-04
journal: Sci Rep
DOI: 10.1038/s41598-022-10945-y
sha: e45e1ddce4a3817496ed4a00f7b1ae6256fc2374
doc_id: 983482
cord_uid: wqvoqf0a

With the COVID-19 pandemic, documenting whether health care workers (HCWs) are at increased risk of SARS-CoV-2 contamination and identifying risk factors is of major concern. In this multicenter prospective cohort study, HCWs from frontline departments were included in March and April 2020 and followed for 3 months. SARS-CoV-2 serology was performed at month 0 (M0), M1, and M3 and RT-PCR in case of symptoms. The primary outcome was laboratory-confirmed SARS-CoV-2 infection at M3. Risk factors of laboratory-confirmed SARS-CoV-2 infection at M3 were identified by multivariate logistic regression. Among 1062 HCWs (median [interquartile range] age, 33 [28–42] years; 758 [71.4%] women; 321 [30.2%] physicians), the cumulative incidence of SARS-CoV-2 infection at M3 was 14.6% (95% confidence interval [CI] [12.5; 16.9]). Risk factors were the working department specialty, with increased risk for intensive care units (odds ratio 1.80, 95% CI [0.38; 8.58]), emergency departments (3.91 [0.83; 18.43]) and infectious diseases departments (4.22 [0.92; 18.28]); current smoking was associated with reduced risk (0.36 [0.21; 0.63]). Age, sex, professional category, number of years of experience in the job or department, and public transportation use were not significantly associated with laboratory-confirmed SARS-CoV-2 infection at M3. The rate of SARS-CoV-2 infection in frontline HCWs was 14.6% at the end of the first COVID-19 wave in Paris and occurred mainly early. The study argues for an origin of professional in addition to private life contamination and therefore including HCWs in the first-line vaccination target population. It also highlights that smokers were at lower risk. Trial registration The study has been registered on ClinicalTrials.gov: NCT04304690 first registered on 11/03/2020.

Setting, design and participants. The SEROCOV multicenter prospective cohort study was conducted in 4 adult hospitals (Bichat, Pitié-Salpêtrière, Saint-Antoine, Tenon) and 1 pediatric hospital (Trousseau) of the Assistance Publique-Hôpitaux de Paris (AP-HP) network. Participants were included from March 16 to April 24 2020, with a 3-month follow-up. Bichat and Pitié-Salpêtrière hospitals are dedicated referent hospitals for emerging biological risk at AP-HP and primarily received all COVID-19 confirmed cases, from the epidemic onset in Paris until mid-March 2020, when all AP-HP hospitals were positioned to take care of COVID-19 patients.

The SEROCOV study was approved by the ethics committee (CPP Sud-Ouest et Outre-Mer I, approval no. 2-20-023 id7257) and all participants signed informed consent before inclusion. We also confirm that all experiments were performed in accordance with relevant guidelines and regulations.

All HCW staff (doctors-either senior physicians or residents-nurses, care assistants, laboratory technicians and other personals in contact with patients) who worked in COVID-19 frontline departments (emergency, infectious diseases, intensive care units and virology laboratory) of the selected hospitals were informed about the study and asked to participate. Staff who were not active during the inclusion period were not eligible. After signing informed consent, each participant underwent venous blood sampling for SARS-CoV-2 serology and was asked to complete a self-reported paper-based questionnaire on baseline characteristics and pre-inclusion symptoms suggestive of COVID-19. Thereafter and up to 3 months after inclusion, the HCW participants received a weekly reminder to repeat and fill the survey on symptoms and, in case of symptoms, asked for a nasopharyngeal swab for SARS-CoV-2 RT-PCR. The survey was collected on a paper form which was stored in each department and made available all along the follow-up period for the participants. At month 1 (M1) and M3 after inclusion, venous blood sampling was again systematically proposed for serology testing.

Anti-SARS-CoV-2 IgG assay for serology testing. Blood samples were sent immediately to the virology department of each participating hospital and centrifuged, and EDTA plasma was frozen at − 20 °C until tested by batch in the Pitié-Salpêtrière virology laboratory. Plasma samples were analyzed on the Abbott Architect platform with the Abbott SARS-CoV-2 IgG assay, targeting the viral nucleoprotein 8 . Results were interpreted as recommended by the manufacturer: an index value < 0.5 was considered negative, 0.5-1.4 weak positive, and ≥ 1.4 positive. When SARS-CoV-2 infection was suspected in an HCW during the study period, the COVID-19 diagnosis was established by RT-PCR on a nasopharyngeal swab with the Cobas SARS-CoV-2 kit (Roche Diagnostics) or RealStar SARS-CoV-2 RT-PCR kit (Altona), as previously reported 9 . At baseline and up to 3 months after inclusion, participants completed a self-reported questionnaire weekly on symptoms suggestive of COVID-19 and as appropriate, SARS-CoV-2 RT-PCR results, the diagnosis retained, and COVID-related sick days and/or hospitalization.

At M3, adherence to PPE recommendations during the study period was reported on a 5-point Likert scale (from "never" to "systematically").

Statistical analysis. The number of eligible HCWs in participating services was estimated at approximately 1,000 at the time this study was designed. This planned sample size allowed for estimating a cumulative incidence of laboratory-confirmed SARS-CoV-2 infection at M3 of 5% (95% confidence interval [CI] [3.7; 6.5]), a cumulative incidence of 10% (8.2; 12) , and a cumulative incidence of 20% (17.6; 22.6) .

Staff characteristics are reported as percentages for categorical variables and median (interquartile range [IQR]) for continuous variables.

Multiple imputation was used to replace missing serology testing at M0, M1 or M3. Briefly, 10 copies of the dataset were created with the missing values replaced by imputed values based on observed data including observed serology results and characteristics of participants (including age, sex, job-related data, smoking status, public transportation use, adherence to PPE recommendations and occurrence of ageusia and/or anosmia over the study period). Each dataset was then analyzed by using standard statistical methods, and the results from each dataset using the statistical methods described below were pooled into a final result by using Rubin's rule 10 .

For binomial proportions, confidence intervals were estimated by the Wilson method for multiple imputation 11 .

Risk factors of laboratory-confirmed SARS-CoV-2 infection at M3 were assessed in the whole cohort by univariate and multivariate logistic regression. Baseline variables included in the multivariate model were defined a priori (age, sex, job-related data, public transportation use and smoking status), and no variable selection was performed. A second logistic model was developed for the same outcome among high-risk HCWs only (i.e., excluding virology staff and jobs rated as "other") and accounting for adherence to PPE recommendations. Finally, risk factors of laboratory-confirmed SARS-CoV-2 infection at inclusion (M0) were evaluated by the same approach.

All the analyses were computed at a two-sided α level of 5% with R software, version 4.0.0.

Ethics approval. The 

From March 16 to April 24, 2020, 1,177 HCWs were included; 115 were excluded because they did not work in the participating departments, so 1062 HCWs remained for analysis. The participation rate was 77% for medical staff and 59.5% for nurses/care assistants. The main characteristics of the study population are in Table 1 Fig. 1 ). At M3, during the whole study period, 93.0% of HCWs reported that they wore a surgical mask, 77.8% wore an N95 mask when performing high-risk tasks (nasopharyngeal swab), and 98.5% washed hands and/or used hydro-alcoholic hand friction before and after each contact with a patient ( Table 1 ). The dates of inclusion and follow-up serologies according to the epidemic curve are in Fig. 2 .

At baseline, 154/1062 (15.4%) HCWs with available data reported having symptoms suggestive of COVID-19 before inclusion, mainly fever (n = 42), myalgia (n = 34), headache (n = 54), ageusia and/or anosmia (n = 24), cough (n = 55), respiratory signs (n = 69), and gastrointestinal signs (n = 27) ( Table 1) .

At inclusion, 61 (5.8%) HCWs had positive SARS-CoV-2 serology results: 23 (7.2%) physicians and 38 (5.1%) nurses/care assistants staff. Reports of previous symptoms suggestive of COVID-19 were more frequent for HCWs with positive than negative serology at inclusion (50% vs 13.3%; p < 0.0001), particularly symptoms very suggestive of COVID-19 such as ageusia/anosmia (48.3% vs 8%). Conversely, 50% of participants with positive serology at inclusion reported no previous symptoms.

Because Of the 147 participants with laboratory-confirmed SARS-CoV-2 infection at M3, only 88 (59.9%, 95% CI [51.47; 67.85]) reported symptoms suggestive of COVID-19 before or during the study period. Among the 416 participants with negative serology at M0 and reporting symptoms suggestive of COVID-19 during the study period, in those with and without documented SARS-CoV-2 infection, 58.7% vs 13.3% reported sick leave related to these symptoms (p < 0.0001). Among the 147 participants with laboratory-confirmed infection by SARS-CoV-2 at M3, 3 were hospitalized for COVID-19 and none died. Table 1 . Baseline characteristics of the study population according to SARS-CoV-2 serology at inclusion. Data are n (%) for qualitative variables and median [interquartile range] for quantitative variables. a HCWs with positive, negative or missing (n = 2) serology at inclusion, thus 2 more individuals than the sum of the 2 other columns. b Others include (but not limited to): secretaries, nurse's managers, social workers. c Collected at the end of the study on a 5-point Likert scale (0, never, to 5, systematically), reported as the proportion of HCWs rating 4 or 5; PPE: personal protective equipment. In the subgroup of high-risk HCWs (i.e., physicians, nurses and care assistants in clinical wards), adjustment on adherence to PPE recommendations did not change these results (Table 5 ).

We conducted this multicenter prospective cohort study among frontline HCWs to investigate SARS-CoV-2 infection in HCWs during the first COVID-19 epidemic wave in Paris, France. We report a 5.8% baseline (early phase) SARS-CoV-2 seroprevalence rate together with a 3-month 14.6% rate of laboratory-confirmed SARS-CoV-2 infection (end of first wave). Most infections occurred very early, that is, diagnosed at M1. Among the identified risk factors was the working department, infectious disease units being at highest risk at the very early phase, then emergency departments during the epidemic peak, with the same level of risk for both at the end of the wave and intensive care units with an intermediate risk, with the virology laboratory staff as reference. Current smokers were at reduced risk. Demographics, other job-related characteristics, adherence to PPE, and use of public transportation were not significantly associated with SARS-CoV-2 infection. To our knowledge, The seroprevalence in the general population estimated in the SAPRIS study 12 in the same geographical area (Greater Paris) in May 2020, corresponding to M1 in the SEROCOV study, was significantly lower than in the SEROCOV first-line HCWs: 6.4% in the 20-to 59-year-old population of the SAPRIS study (using a similar Table 3 . Risk factors of laboratory-confirmed SARS-CoV-2 infection at inclusion (after imputation of missing data; N = 1017). HCWs from virology department were excluded because none had a positive serology result at inclusion. Others include (but not limited to): secretaries, nurse's managers, social workers. OR odds ratio, CI confidence interval. 6, 7 . In the United States, in a Multistate Hospital Network, Self et al. reported 6.0% positive serology in front-line HCWs 5 . Among the 194 participants with positive results, 56 (29%) reported no symptoms in the previous weeks. In our study, this asymptomatic proportion was 50% among participants with positive serology at inclusion. Conversely, we confirm that anosmia and/or ageusia during the epidemic wave was a discriminative clinical sign, although with low sensitivity. This result confirms the Belgian monocentric study findings reporting of anosmia associated with an OR for positive serology of 7.78 ([95% CI [5.22; 11 .53]) 2 .

Most HCW contaminations occurred very early during the epidemic wave, almost half documented at baseline (positive serology: 5.9%, 95% CI [4.7; 7.5]) and 12.9% at M1 (corresponds to infections during the ascendant phase of the epidemic wave as shown in Fig. 2) . The kinetics of these infections probably reflects both infections in the private sphere, following the epidemic curve of the general population, but also the effectiveness of better adherence to protective measures in professional activity related to an enforcement of PPE and standard measures as the epidemic progressed. The family and friends or professional origin of HCW contamination is still debated 15 . In a single center study in Belgium of 3056 HCWs (tested with an IgG/IgM rapid lateral flow assay), the OR for positive serology was 3.15 (95% CI [2.33; 4.25] ) when reporting household contact with a suspected or confirmed COVID-19 case 2 . Conversely, a large study in Denmark of 17,971 hospital staff (based on the adjusted seroprevalence according to living and working places) found risk of SARS-CoV-2 positive serology associated with workplace rather than place of living 7 .

Recently, a large survey of HCWs in the United Kingdom reported anti-spike or anti-nucleocapsid IgG antibodies associated with substantially reduced risk of SARS-CoV-2 reinfection and highlighted that individual Table 5 . Risk factors of laboratory-confirmed SARS-CoV-2 infection at month 3 in high-risk healthcare workers, accounting for adherence to personal protective equipment recommendations (after imputation of missing data; N = 916)). Data are n (%) for qualitative variables; median [interquartile range] for quantitative variables; OR: odds ratio; CI: confidence interval. a Collected at the end of the study on a 5-point Likert scale (0 = never to 5 = systematically), reported as the proportion of HCW rating 4 or 5; PPE: personal protective equipment. www.nature.com/scientificreports/ HCWs middle-/long-term protection by post-COVID self-immunization is a major concern 16 . Our data support the persistence of SARS-CoV-2 antibodies at 3 months: only 11 (8%) participants with positive serology had later negative results. Controversial results were reported by Patel et al. for 249 HCWs with a positive serology rate decreasing from 7.6% at baseline to 3.2% at 60 days, whereas Gudbjartsson et al. showed no decline in anti-SARS-CoV-2 antibodies at 4 months after COVID-19 diagnosis 17, 18 . Workers in first-line clinical departments (infectious diseases, emergency, intensive care unit) were at higher risk of laboratory-confirmed SARS-CoV-2 infection as compared with virology laboratory staff (Table 3 ). In a large study in Denmark, Jespersen et al. reported the highest adjusted seroprevalence in emergency departments: 29.7% (95% CI [23.1; 37.6] ); departments with no or limited patient contact had the lowest seroprevalence: 1.79% (0.31; 3.90) 7 . From January to mid-March 2020, infectious disease departments and intensive care units directly admitted patients with suspected COVID-19 from home or the general practitioner's office, bypassing the emergency department, and were therefore initially more exposed to SARS-CoV-2 than emergency department workers. This situation may explain the association of SARS-CoV-2 positive serology at inclusion with working in intensive care units (OR 1.2 [95% CI (0.47; 3.51)]) and especially infectious diseases units (6.61, [2.64; 16 .54]) versus emergency departments (Table 3) . Virology laboratory staff, although handling numerous SARS-CoV-2-contaminated samples, are probably more concerned and stricter about PPE enforcement to prevent contamination and had no staff with positive serology at inclusion, together with the lowest seroprevalence rate at 3 months. Similarly, as compared with emergency department staff, intensive care unit staff were at intermediate risk, which could be explained by a more usual concern about the risk of pathogen transmission (particularly during highly resistant bacteria outbreaks).

At M0 and M3 and in the analysis restricted to high-risk HCWs and accounting for adherence to PPE measures, being a current smoker reduced the risk of laboratory-confirmed SARS-CoV-2 infection (OR 0.36, 95% CI [0.21; 0.63]). An increasing number of studies have reported this reduced risk of SARS-CoV-2 infection in current smokers in different contexts (cross-sectional studies in the general population; cross-sectional, case-control or control studies in different populations) [19] [20] [21] [22] [23] [24] . Our results from a large multicenter prospective study in a young population of HCWs with 26.9% current smokers support the role of use of tobacco substances as protective against SARS-CoV-2 infection, which may act through the nicotine pathway [25] [26] [27] [28] . This result should not encourage smoking to limit the risk of COVID-19; indeed, 78,000 deaths per year are due to smoking in France 29 . However, the nicotinic hypothesis is of interest, even in the era of an anti-SARS-CoV-2 vaccine, and is being investigating for prevention of COVID-19 (NCT04583410).

The professional category was not a risk factor for laboratory-confirmed SARS-CoV-2 infection, even if medical students exhibited high prevalence as compared with senior physicians (23.5%, 95% CI [20.8-26.4 ] vs 14.2% [12.2-16.5 ]) ( Table 2 ). This result may be explained by an insufficient practice or experience with PPE recommendations in medical students or confounded by age. Similarly, reporting high compliance with PPE was not protective (Table 4 and Supplementary Table 1 ). However, reported adherence to PPE was very good in the SEROCOV population. Regardless, several studies highlighted greater prevalence of SARS-CoV-2 positive serology in HCWs reporting not systematically wearing PPEs in general or covering the face during clinical encounters than in HCWs fully compliant (15.8% vs 4.3%, p = 0.07, and 9% vs 6% p = 0.012) 5, 6, 14 . The questionnaire on PPE compliance completed only at the end of follow-up in our study may explain in part this discrepancy due to a potential memory bias in addition to social desirability bias.

The strengths of the study are the prospective design, the recruitment in the early phase of the first epidemic wave; the multicenter, multi-department and multi-professional recruitment of the study; the large sample size; the 3-point serology testing; the centralization of serology assays; and the criteria retained for laboratoryconfirmed SARS-CoV-2 infection (rather than seroprevalence alone, which is exposed to negativation). As limitations, first, 11.7% HCWs were lost to follow-up at M3, but missing serology results were handled by multiple imputations. Second, national and center-driven recommandations concerning PPE may have evolved along the study period, while compliance with PPE and standard recommendations were queried only at the end of the study and not weekly, as for the clinical signs, with therefore a potential risk of memory bias and social desirability bias. Third, we did not adjust for clustering by site, which was not possible due to the limited number of centers. Fourth, we did not collect personal risk factors (social and environmental data) as we were focused on professional one's. This deliberate choice was important in the context of the first wave, to promote adhesion of HCW's to the study. Finally, the serology assay we used (targeting the viral nucleoprotein) is less sensitive than anti-spike assays 8, 12 . Therefore, the reported incidence rate of documented SARS-CoV-2 infection in the SEROCOV study may be slightly underestimated. However, we accounted for this issue in the comparison with seroprevalence data available in the general population.

In summary, in this study of frontline HCWs in Paris, France, we report a 14.6% SARS-CoV-2 cumulative incidence rate at the end of the first COVID-19 wave, with a seroprevalence in May 2020 significantly higher than in the general population. The study of risk factors for laboratory-confirmed SARS-CoV-2 infection argues for a significant part of professional (together with household) contaminations and highlights smoker status as an independent protective factor. At the era of anti-SARS-CoV2 vaccination, our results represent an argument to include HCWs in the first-line target population.

Data collected for the study, including individual participant data and a data dictionary defining each field in the set, will be made available to others under request. The study protocol and statistical analysis plan will be available on request on an URL of the URC Pitié Salpêtrière Charles Foix.

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We sincerely thank all the HCWs for their participation. We specifically thank for their exceptional involvement in data management and collection of blood samples: Ilaria Cherubini, Enfel Houas, Guillaume Payan, Sylvie Le Gac, Odile Fleurot, Elisabeth Bouvet, Christine Jestin, Justine Dorchies, Nathanelle Yeni, Olivia Da Conceicao, Lucie Touchar, Nicolas Mediamolle, Margot Dropy, Aida Zarhrate, Fatiha Bouchama, Marina Vaz, Mariem Ben Cheikh Souguir and Pr Vincent Calvez for virology laboratory staff management. We thank Laura Smales for English editing.

The authors declare no competing interests.

Supplementary Information The online version contains supplementary material available at https:// doi. org/ 10. 1038/ s41598-022-10945-y.Correspondence and requests for materials should be addressed to P.H.

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