key: cord-0982324-812st0np authors: Vandenberg, Olivier title: Development and potential usefulness of the COVID-19 Ag Respi-Strip diagnostic assay in a pandemic context. date: 2020-04-29 journal: nan DOI: 10.1101/2020.04.24.20077776 sha: bb1c1c4784b6b5aebb93b4769c0c102b11eb296d doc_id: 982324 cord_uid: 812st0np Introduction: COVID-19 Ag Respi-Strip, an immunochromatographic (ICT) assay for the rapid detection of SARS-CoV-2 antigen on nasopharyngeal specimen, has been developed to identify positive COVID-19 patients allowing prompt clinical and quarantine decisions. In this Original Research article, we describe the conception, the analytical and clinical performances as well as the risk management of implementing the COVID-19 Ag Respi-Strip in a diagnostic decision algorithm. Materials and Methods: Development of the COVID-19 Ag Respi-Strip resulted in a ready-to-use ICT assay based on a membrane technology with colloidal gold nanoparticles using monoclonal antibodies directed against the SARS-CoV and SARS-CoV-2 highly conserved nucleoprotein antigen. Four hundred observations were recorded for the analytical performance study and thirty tests were analysed for the cross-reactivity study. The clinical performance study was performed in a retrospective multi-centric evaluation on aliquots of 328 nasopharyngeal samples. COVID-19 Ag Respi-Strip results were compared with qRT-PCR as golden standard for COVID-19 diagnostics. Results: In the analytical performance study, the reproducibility showed a between-observer disagreement of 1.7%, a robustness of 98%, an overall satisfying user friendliness and no cross-reactivity with other virus-infected nasopharyngeal samples. In the clinical performance study performed in three different clinical laboratories we found an overall sensitivity and specificity of 57.6% and 99.5% respectively with an accuracy of 82.6%. The cut-off of the assay was found at Ct<22. User-friendliness analysis and risk management assessment through Ishikawa diagram demonstrate that COVID-19 Ag Respi-Strip may be implemented in clinical laboratories according to biosafety recommendations. Conclusion: The COVID-19 Ag Respi-Strip represents a promising rapid SARS-CoV-2 antigen assay for the first-line diagnosis of COVID-19 in 15 minutes. Its role in the proposed diagnostic algorithm is complementary to the currently-used molecular techniques. Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) represents a major health threat for humankind (1) . In the absence of vaccine and specific antiviral treatment, the containment of the pandemic relies mainly on rapid identification and isolation of COVID-19 patients (2) . In addition to chest computed tomography (CT), this strategy is based on the availability of real-time reverse transcription polymerase chain reaction (qRT-PCR) to be performed on any suspect patient presenting specific symptoms (3) . These symptoms being similar to seasonal flu, it's currently not possible to test all patients with flu-like symptoms due to the lack of resources and available diagnostic tests. As mentioned in the audio interview of the New England Journal of Medicine the 19 th of March 2020 (2) , the importance of establishing the correct diagnosis is central to give the appropriate care to COVID-19 patients. So far, several molecular-based tests have been developed and are being implemented in laboratories and reference centres with capabilities to perform such tests (see https://www.who.int/emergencies/diseases/novel-coronavirus-2019/technicalguidance/laboratory-guidance for details). However, the availability of molecular diagnostic tests is a concern, as we face worldwide shortage of the reagents. Although molecular diagnosis is the most sensitive and specific diagnostic method, the need for material, reagent and trained personnel limit the number of assays that can be performed and saturates the laboratories. Moreover, qRT-PCR still does not have a very rapid turnaround time (TAT). The development of rapid diagnostic assays allows faster confirmation of a clinical suspicion of COVID-19, leading to earlier isolation and appropriate clinical care for the patients with positive results. Several serological tests have been developed but serological antibodydetection assays do not fulfil the requirement of the detection early after infection as the average incubation period of 3-5 days is too short for the development of an immune response (4) . In this perspective, Coris BioConcept (a Belgian manufacturer) has developed an immunochromatographic assay (ICT) for the rapid detection of SARS-CoV-2 antigen on nasopharyngeal specimens in about 15 minutes. Thanks to the results from previous research work on SARS-CoV, the nucleoprotein was identified as the best target for a sensitive diagnostic sandwich assay using monoclonal antibodies (5, 6, 7) . The SARS-CoV-2 shares high similarity with bat coronaviruses and the known SARS-CoV of the 2002-2003 epidemic (8) provided the opportunity to use previously developed reagents for developing a rapid diagnostic All rights reserved. No reuse allowed without permission. (which was not certified by peer review) is the author/funder, who has granted medRxiv a license to display the preprint in perpetuity. The copyright holder for this preprint this version posted April 29, 2020 . . https://doi.org/10.1101 /2020 5 assay able to also detect the new SARS-CoV-2. The diagnostic technique, consisting of an anti-SARS-CoV capture antibody fixed onto nitrocellulose strip and a labelled anti-SARS-CoV antibody migrating with the buffer and the sample. Regarding the COVID-19 pandemic and the urgency of sharing relevant data, in this original research article we describe the analytical performance of COVID-19 Ag Respi-Strip, according to the requirements of the actual European Directive 98/79/EC (9), the future European Regulation 2017/746 on in vitro diagnostic (IVD) medical devices (10), the Scandinavian SKUP-protocol (11) used for validation of qualitative tests and the clinical performance obtained with a multi-centric retrospective study. In addition, we reflect on the risk management and the conditions to be fulfilled before implementation as a point-of-care test (POCT) outside the hospital. All rights reserved. No reuse allowed without permission. (which was not certified by peer review) is the author/funder, who has granted medRxiv a license to display the preprint in perpetuity. The copyright holder for this preprint this version posted April 29, 2020 . . https://doi.org/10.1101 /2020 6 Antibodies and antigen: Eleven antibodies (designed A to K) (12) were coated at various concentrations on nitrocellulose (Advanced microdevices, India) with antibodies A to J coupled to colloidal gold beads (NanoQ, Belgium). Recombinant SARS-CoV nucleoprotein (recNP) preparation was obtained as described previously (12) and was coated on a nitrocellulose membrane or conjugated on colloidal gold nanoparticles. Recombinant his-tagged SARS-CoV-2 NP (recNP-2) has been produced in insect cell and purified (2-step purification) ; final purity > 90% (Genscript, Leiden, NL). Ag Respi-Strip: the ICT strip consists of nitrocellulose laminated on a plastic backing, colloidal-gold conjugates being dried in a conjugate pad (Ahlstrom-Munksjö, France) overlapping the bottom of the nitrocellulose. For preliminary direct detection, SARS-CoV and SARS-CoV-2 NPs were coated at 100µg/ml and gold-labelled antibodies were deposited at 0.85µl/mm at 3 OD530nm. For the COVID-19 Ag Respi-Strip test, monoclonal antibodies directed against SARS-CoV and SARS-CoV-2 highly conserved nucleoprotein antigen are coated on the nitrocellulose. Another monoclonal antibody is conjugated to colloidal gold nanoparticles. The conjugate is immobilized on the conjugate pad. During the development, tests analysing the antibody reactivity and intensity were performed using serial dilutions of SARS-CoV-2 in a final volume of 300µl of buffer (data not shown here, cfr. Supplementary material). The results were determined after 15 min. The standard operating procedure for COVID-19 Ag Respi-Strip is as follows (Figure 1 ): Transfer 100 µL of nasopharyngeal sample (nasopharyngeal aspirates, nasopharyngeal washes or nasal/nasopharyngeal swabs) in the collection tube. Add 100 µL of the LY-S dilution buffer to reach a dilution ratio of 1/2. Cap the tube with the stopper. Stir thoroughly to homogenize the solution. Open the tube. Immerse the strip in the direction indicated and close the tube with the stopper. Allow to react 15 minutes and read the result. For the interpretation of results, with a negative test result, a reddish-purple line appears at the Control line (C) position (upper line). No other band is present. For a positive test result, in addition to a reddish-purple band at the Control line (C), a visible reddish-purple band appears at the Test line position (T). Intensity of the test line may vary according to the quantity of antigens found in the sample. Any reddish All rights reserved. No reuse allowed without permission. (which was not certified by peer review) is the author/funder, who has granted medRxiv a license to display the preprint in perpetuity. The copyright holder for this preprint this version posted April 29, 2020 . . https://doi.org/10.1101 /2020 purple line (T), even weak, should be considered as a positive result. An invalid test result is when the absence of a Control line indicates a failure in the test procedure. Repeat invalid tests with a new strip. Discard the closed tube according to Biohazard rules. ELISA: A 96-well microtiter plate was coated with 50 µL recNP and recombinant maltose binding protein (MBP, 1 µg/mL) and incubated overnight at 4 °C. The plate was washed with water and washing buffer (phosphate-buffered saline/0.5% Tween-20, PBS-T) and 200 µL blocking solution (PBS-T/5 % milk powder) was added for 20 minutes. Blocking solution was discarded and mAbs were added at 100 pg/ml in 50 µL blocking solution to recNP and MBP and incubated for 1 hour. The plate was washed again and 50 µL rabbit anti-mouse IgG/HRP (Dako) was added at 1:1000 dilution for another 1 hour incubation. The plate was washed and 50 microliter TMB substrate solution was added. All incubations took place at room temperature. The enzymatic reaction was stopped by addition of 50 µL 1 N H2SO4 and light absorption was measured with a photometer at 450 nm using 570 nm as reference wavelength. Measurements were done in duplicates. To obtain the final OD, the OD obtained with the control protein MBP was subtracted from the OD obtained with recNP. Virus: SARS-CoV-2 passage 3 (SARS-CoV-2-Iso_01-Human-2020-02-07-Swe, accession no/genebank no MT093571) was cultured on Vero E6 cells. The titre was determined using plaque assay as describe before with fixation of cells 72hpi. All experiments involving isolated SARS-CoV-2 were performed in Biosafety Level 3 Laboratory at Public Health Agency of Sweden (Folkhälsomyndigheten, Stockholm, Sweden). qRT-PCR: Sample was extracted using Direct-zol RNA MiniPrep kit (Zymo Research). qRT-PCR was run using E-gene SARS-CoV-2 primers/probe following World Health organization advises (13). During the development phase, analytical performance was first performed on serial dilution of cultured virus in parallel of tittering the same virus preparation on Vero E6 cells and testing by qRT-PCR. For the analytical sensitivity and specificity obtained in a clinical biology lab setting, 60 samples from UZ Leuven, the National Reference Centre for the diagnosis of COVID-19 in All rights reserved. No reuse allowed without permission. (which was not certified by peer review) is the author/funder, who has granted medRxiv a license to display the preprint in perpetuity. The copyright holder for this preprint this version posted April 29, 2020 . . https://doi.org/10.1101 /2020 Belgium were analysed in the laboratory LHUB-ULB (Laboratoire Hospitalier Universitaire Bruxelles -Universitair Laboratorium Brussel), Brussels. All samples were nasopharyngeal swabs in viral transport medium. The analysis protocol with the COVID-19 Ag Respi-Strip was as follows: of the 20 positive patient samples with Cycle threshold (Ct) below 25, ten of them were analysed in duplicate; of the 20 weakly positive samples with 25