key: cord-0929954-kjeb421i authors: Chattopadhyay, Amit K; Chattopadhyay, Subhagata title: VIRDOCD: a VIRtual DOCtor to Predict Dengue Fatality date: 2021-04-29 journal: Expert Systems DOI: 10.1111/exsy.12796 sha: f87eea9326e34fcbd322d3d8d4e21c7c0cbd7c9e doc_id: 929954 cord_uid: kjeb421i Clinicians make routine diagnosis by scrutinizing patients' medical signs and symptoms, a skill popularly referred to as"Clinical Eye". This skill evolves through trial-and-error and improves with time. The success of the therapeutic regime relies largely on the accuracy of interpretation of such sign-symptoms, analyzing which a clinician assesses the severity of the illness. The present study is an attempt to propose a complementary medical front by mathematically modeling the"Clinical Eye"of a VIRtual DOCtor, using Statistical and Machine Intelligence tools (SMI), to analyze Dengue epidemic infected patients (100 case studies with 11 weighted sign-symptoms). The SMI in VIRDOCD reads medical data and translates these into a vector comprising Multiple Linear Regression (MLR) coefficients to predict infection severity grades of dengue patients that clone the clinician's experience-based assessment. Risk managed through ANOVA, the dengue severity grade prediction accuracy from VIRDOCD is found higher (ca 75%) than conventional clinical practice (ca 71.4%, mean accuracy profile assessed by a team of 10 senior consultants). Free of human errors and capable of deciphering even minute differences from almost identical symptoms (to the Clinical Eye), VIRDOCD is uniquely individualized in its decision-making ability. The algorithm has been validated against Random Forest classification (RF, ca 63%), another regression-based classifier similar to MLR that can be trained through supervised learning. We find that MLR-based VIRDOCD is superior to RF in predicting the grade of Dengue morbidity. VIRDOCD can be further extended to analyze other epidemic infections, such as COVID-19. . Statistical modelling towards Machine Intelligence (SMI) is an evolving domain of Computer Science and Information Technology. It is popularly used for decision making by a Computer that is trained on domain rules to extract causality driven outcomes within the individualized (patient specific) constraints (Chattopadhyay S . , Neurofuzzy Models to Automate the Grading of Old-age Depression, 2014) . There are several reasons for the increasing dependence on such SMI assisted clinical decision making tools, some of which are the following: a) as an assistive tool for a second opinion; b) as a nursing aid, to preempt a medical condition before therapeutic intervention; c) as a critical complementary support system, particularly in developing countries, that suffer from acute shortage of medical professionals; d) as a telemedicine tool for beginning medical practitioners; e) as an omnipresent referencing guide, that is ubiquitous in nature. There may be other drivers too. SMI algorithms have already been successfully used in several healthcare domains, such as cardiology (Choi, Park, Ali, & Sungyoung, 2020; Xi he, 2020) , mental health (Ashish, Chattopadhyay, Gao, & Hui, 2019) , neurology (Dashti & Dashti, 2020) , radiology/medical imaging techniques (Jin, et al., 2020; Chattopadhyay, Ray, & Acton, 2005) amongst others. Specialized regression algorithms like pseudo Zernike moment and multinomial regression were successfully used in Alzheimer detection (Wang, et al, 2017) and impending hearing loss (Wang, et al, 2019) , including prediction of antimicrobial resistance in ICU-admitted patients (Hernàndez-Carnerero & Sànchez-Marrè, 2021) and (Hernàndez-Carnerero A. , Sànchez-Marrè, Mora Jiménez, Soguero Riuz, Martínez Agüero, & Álvarez Rodríguez, 2020) . The post 2010 era saw a fast emerging landscape of SMI assisted infection modeling (Agrebi & Larbi, 2020 ) (Silver, et al., 2017) . This relates to four key areas -(i) early detection, that can substantially curb morbidity and mortality/case fatality, (ii) early start of treatment typically at the symptomatic stage, (iii) prognostic evaluations, and critically (iv) as a supplement to traditional prognosis tools when they fail to associate events with future prediction of an epidemic due to (a) BIG data size, (b) data complexity, and/or (c) inherent clinical subjectivity (Chen & Asch, 2017) . In most cases related to epidemics and pandemics, early detection is of utmost importance in containing infection propagation, thereby reducing the case fatality rate. This is even more pertinent for resource thrifty developing nations, where SMI based tools can provide seamless and ubiquitous healthcare that is hitherto unavailable to the masses (Daneshgar & Chattopadhyay, 2011) . The starting phase of the infection modeling studies relied on conventional Machine Learning (ML) algorithms, typically consisting of k-Nearest Neighbors as part of a supervised learning algorithm (Watkins & Boggess, 2002) , followed by creation of memory kernels for detecting repeated disease threats (Cuevas, Osuna-Enciso, Zaldivar, Perez-Cisneros, & Sossa, 2012) . Support Vector Machine has also been used to accurately detect malarial parasites from RBC (Go, Kim, Byeon, & Lee, 2018 (Majumdar, Debnath, Sood, & Baishnab, 2018) , Ebola propagation severity/outcome (Colubri, Silver, Fradet, Retzepi, Fry, & Sabeti, 2016) . The latest addition in the lineage are the Multiple Regression classifiers, e.g. regression algorithm, linear regression model, gradient boosted regression tree algorithm, negative binomial regression model, and generalized additive model, that have shown promise in dengue forecasting in China. In the recent past, various aspects of Dengue, both epidemiological and clinical pathophysiological, have been studied. Patients' history, sign-symptoms, investigation results are considered as the independent variables, whereas various types of Dengue fevers represent the dependent variables to develop the classifiers. Decision Tree (DT) and Random Forest (RF) classifiers have been used by (Sarma, Hossain, Mittra, Bhuiya, Saha, & Chakma, 2020) to predict Dengue fever. The study concludes that, with 79% accuracy in prediction, DT-based classifier has outperformed RF-based classifier. Tiruveedhula et al (Tiruveedhula, Navya, Gayathri, & Reshma, 2018) applied Simple Classification and Regression Tree (CART), Multilayer Perceptron (MLP), and C4.5 algorithms to analyze the normal and abnormal cases of Dengue using clinical parameters. CART-based classifier performed best with nearly 100% accuracy. Other algorithms, like ML algorithms, Naïve Baye's, J48, RF, Reduces Error Pruning (REP) Tree, Sequential Minimal Optimization (SMO), Locally Weighted Learning (LWL), AdaboostM1, and ZeroR, have also been used in classifying Dengue data (Rajathi, Kanagaraj, Brahmanambika, & Manjubarkavi, 2018) . Another study targeting early prediction of Dengue incidence in a larger population concluded that the ML-based classifier could detect certain weeks of the year those were found to be vulnerable for dengue outbreak, which would assist the administration and the healthcare setup to get prepared for managing the ailments appropriately. In this study, humidity, wind speed, temperature and rainfall were taken as the independent variables and fed into an SVM classifier whose prediction accuracy, precision, sensitivity, and specificity were found to be 70%, 56%, 14%, and 95%, respectively (Salim, et al., 2021) . In another study with similar objective, i.e., predicting the dengue outbreak timing in an year, authors applied a battery of ML classifiers, e.g., SVM, K-Nearest Neighbor (k-NN), Artificial Neural Network (ANN), Naïve Baye's, DT, Logistic regressions, and LogitBoost ensemble classifier. LogitBoost ensemble classifier was able to predict the outbreak with 92% accuracy (Iqbal & Islam, 2019) . SMI tools have also been used in other areas of data modeling, such as Support Vector Machine (SVM) learning algorithm, Cross-validation (LOOCV) method, and Nested One-versus-one (OVO) SVM. The latter was used to analyze gene sequences from bacteria in preference to the high-resolution melt (HRM) method. The combination of SVM and HRM has been shown to identify bacterial colonies (Fraley, et al., 2016) with high accuracy (100%). SMI based epidemiological models are known to successfully complement error ridden laboratory procedures relating to sample collection, preservation, distribution, and laboratory testing, e.g. assessing fatality due to pulmonary Tuberculosis, the second most frequent cause of deaths (Saybani, et al., 2015) , especially of the multi-drug-resistant variety (Huddar, Svadzian, Nafade, Satyanarayana, & Pai, 2020) , or Cardiovascular (CVD) risk with lifestyle changes (Xi He, et al 2020) . A topic that is assuming critical importance during the present Covid onslaught is the SMI interpretation of herd immunity (O'Driscoll, et al., 2020) , especially in predicting its emergence (Chattopadhyay, et al 2021) . The state-of-the-art literature clearly points to three important knowledge gaps: None of the ML-based classifiers used in these analyzes integrate the rule-bases of the human clinicians with those from the model, thus making these studies less robust clinically. The earlier studies use MLR, RF and other classifiers to classify the data points through a form of unsupervised learning. VIRDOCD conceptualizes MLR and RF-based classifiers as 'learning tools', based on its coefficient values, entropies, as well as Gini index, to analyze data modeled outcomes through the lenses of seasoned clinicians. (iii) Many of these studies lack cross-validation against other classifiers, unlike in this study. Structured on these three research questions, the key deliverable of this study is a tool that can easily integrate with a medical setup that is usable both by clinicians and nurses, thereby, doubling up as a Virtual Doctor (VIRDOCD). The aim is not to substitute or even downplay the role of human intervention but rather to serve as a complementary diagnostic aid. A key technical novelty of this study is the reinvention of intelligent statistical modeling as an equally powerful diagnostic tool, substituting the more popular choice of deep learning algorithms that are more complex and hence difficult to maneuver. VIRDOCD can be a layman's tool, that is self-contained, and with attributes that can be sourced in individualized healthcare. Section II of the article outlines the Experimental design; section III illustrates the results obtained; section IV summarizes the conclusions from this virtual model and highlights on future extensions. The numerical experiment uses a 6-stage data modeling architecture that is divided into (A) Data collection from various sources taking proper ethical measures (Chattopadhyay S. , 2012) , (B) Data preprocessing and fidelity check (Goforth, 2015) , (C) Data mining -examining within group and between group variations of the collected data by 1-WAY ANOVA, (Anwla, 2020) (D) Development of predictive model using Multiple Linear Regressions (MLR) (Rao, 2020) , (E) Testing the model performance on a set of test cases where outputs are known, (F) Parametric study to observe how each of the individual input parameters influences the prediction, as well as their cross-correlated cumulative contribution towards the prediction performance of the model, and (G) Comparing MLR-based classifier's performance accuracy with a Random Forest (RF)-based classifier and then validating against human clinicians. Primary data (N=100) were enumerated from bed tickets and prescriptions. Data collection processes and activities are outlined in Table 1 below. Clinical 'input' parameters: A total of 11 "sign-symptom" (Sahak, 2020) , as follows, 1. Fever: This is the most common symptom in symptomatic dengue cases, sometimes exacerbated due to viral load in blood (viraemia). 2. Sore throat: Due to involvement of the upper respiratory tract. 3. Headache: Due to the associated sinusitis as the consequence of upper respiratory tract infection. 4. Nausea: Due to viraemia. 5. Vomiting: Due to viraemia 6. Stomach ache: Due to bleeding in the rectus muscle sheath. 7. Myalgia: Due to diffused viral invasion in muscles causing inflammation. 8. Rashes: Due to capillary dilatation under the skin. 9. Diarrhea: Due to excessive fluid generation inside bowel. 10. Joint pain: Due to inflammation of the joint. 11. Bleeding gum: Due to lowering of platelet count. Sore throat: Patient reported, clinically tested; cumulative weights w [0, 1] ascribed on a 3-point scale -Mild (w ≤ 0.33), Moderate (w ≤ 0.66) and Severe (w > 0.66). The remaining parameters are similarly assessed over a 3-point mMS scale. Severe (S) (O>0.66): patients had to be shifted to ICU/ITU amounting to increased recovery time or fatality. In this study, patients with O 0.66 became critically ill, but none expired. Together, this 3-point classification of severity calibration is defined as 'mMS'. Note that the cut-off values used (0.33 and 0.66) relate to one-third and two-thirds number density of cases; different cut-off markers could also be subjectively implemented. The statistical modeling and predictive ML algorithm in this study were implemented through Python, set within the panda, matplotlib, scipy, numpy, math and sklearn environments (data and code to be released through open access repositories). Input data, presented as csv spreadsheet, comprise clinical parameters recorded from inputs by attending clinicians. The result was expressed as a 3-dimensional (N X P x K) asymmetric matrix, where 'N' (=100) denotes the number of cases/patients, 'P'(=11) the clinical parameters and 'K' (=3) refers to the corresponding 3-point outcome possibilities (mild, moderate, severe). The operator matrix is thus represented as follows Data "x" thus collected were (column) normalized between [0,1] using 'Max-Min normalization' method (McCaffrey, 2020) , leading to a min-shifted data set normalized within the maximum-minimum values: where 'min' is the minimum cell value and 'max' is the maximum cell value correspond to parameters 'P' and 'K', as defined in Eq (1). This technique linearly maps the variable 'x' to 'y' in a continuous number space varying between 0 and 1 without any data loss, which is a significant advantage. Note, our choice of 'min' value is one that is close to the baseline '0' but not exactly at '0' while 'max' approaches '1' but is not exactly at '1'. The uncertainty windows around the two limiting values account for subjectivity in diagnosis that are known to fluctuate both with patients and clinicians alike. Parameters 'P i ' (i = 1, 2 …, 11) and outcomes 'K j ' (j = 1, 2, 3) follow the same 3-point mMS scale as before -'mild' (m<0.33), 'moderate' (0.340.05, the sign-symptoms profile follow a non-Gaussian probability density function (Figure 3) . Table 4 provides prediction for a given (first) dengue case conducted to test the fidelity of the code and the mathematical formula using Eq. (5). R 2 calibrating the proportion of variance of the fatality prediction that is predictable from the independent sign-symptoms, showing the goodness of model fit, is shown in Figure 4 . The R 2 from our data scores at 97% indicating that 97% of the data are distributed close to mean. The result confirms the stability of the VIRDOCD model that is suggestive as the number of data points (100) was not exactly statistically large. From ANOVA, it was also clear that sign-symptoms were largely independent of each other leading to a good statistical fit (R 2 = 97%) for the VIRDOCD model. 1. The database comprised of 100 dengue cases involving 11 input parameters and one output parameter, each with three grades (mild, moderate, and severe). Input parameters were essentially the sign-symptoms of dengue, while the output parameter represents the grade or degree of case fatality. 2. All 11 input and output parameters were assigned weights [0,1] by ten experienced clinicians. Based on their domain knowledge, each case could be represented as an IF-THEN rule and hence, we could consider it not just as a mere database, but rather as a 'rule base' of 100 cases. This 'rule base' is nothing but the domain knowledge or "Clinical eye" of the doctors. 3. From ANOVA it was clear that sign-symptoms jointly and individually influence the grade/severity of case fatality. Each sign-symptom was independent of the other and followed non-Gaussian distributions, as expected. The model showed a good statistical fit (R 2 = 97%) and hence, could be used to train the VIRDOCD model. Coefficient constants, predictors (i.e., sign-symptoms) as in Table 5 : Figures 5a and 5b represent a sample prediction done by testing VIRDOCD and RF (trained on 75% data) on 25% test cases using 10-fold cross-validation, including error estimation. As discussed, the target of this study is to deliver a Virtual "Clinical Eye", which is nothing but the product of the coefficient values of the weighted sign-symptoms and the added 'bias' value, obtained from equation 5. The coefficient values are the numerical representations of individual 'perception' based judgement. Since no human judgement is completely bias-free, to make VIRDOCD's clinical judgement close to humanjudgment, the bias value obtained from equation 5 has been added to the score line. The cumulative scores (Y) for each test case is hence the product of coefficient values (B) and weighted sign-symptoms (X), added with bias (B0). Table 5 tabulates the Coefficient values for each sign-symptom (B0 = 0) as outlined in Eqn. (5). VIRDOCD output, designated as Calc_Out in Table 6 (column 2), is evaluated by combining the parameters from where 'Calc_Out' (2 nd column) and 'Target_Out' (3 rd column) for the 1 st test case (1 st row, denoted by 0) matches real data. Detailed parametric study is an important step to examine the 'individuality' in decision making by VIRDOCD. The study was done in two stages (i) Single factor influence: analyzing system response by individually varying the weights of one of the 11 factors (sign-symptoms) while keeping the other 10 unchanged over a 3-point mMS span: 0.1 (mild), 0.5 (moderate), and 0.9 (severe), and (ii) All factor influence: analyzing multidimensional system response by varying all 11 factors simultaneously over a wider 5-point span: 0.05 (very mild), 0.1 (mild), 0.5 (moderate), 0.9 (severe), 0.95 (very severe). Single factor influence ( Table 6) : 'Nausea (N)' is a specific case in hand. If the other 10 sign-symptoms are restricted to the 'mild' (=0.1) category, the individual N-response (=0.541) records as 'moderate', that is of a higher category. On the other hand, if the other 10 factors are constrained at the 'moderate' level (=0.5), the individual N-response (=0.6355) records as 'severe', that is of the highest category. This is a highly encouraging result as VIRDOCD can be seen to show judgmental independence in analyzing the dengue CFG, akin to that of a team of experienced clinicians. It does not over or under weigh its prediction depending on the initial choice of the mMS category. Multi-factor influence ( Table 7) : Table 7 shows how a dengue case is predicted by VIRDOCD when sign-symptom weights are valued at 0.05 (very mild), 0.1 (mild), 0.5 (moderate), 0.9 (severe), 0.95 (very severe). We see that despite all symptoms being weighted as very mild, or mild or severe or very severe, VIRDOCD has retained its own opinion as to the definition of the real 'moderate' throughout, despite varying weights from the clinicians over a much wider range, which again confirms independence in the VIRDOCD prediction profile, as expected with conventional clinicians. Summary of the performance of VIRDOCD:  MLR algorithm has worked well to build the VIRDOCD (Virtual doctor) predictive model.  Diagnostic accuracy (RMS) -approximately 75%.  Robust, i.e., not so hypersensitive to the learnt rule base and is able to preserve its individuality. Performance of VIRDOCD has been validated by (i) comparing with another regression-based classifier, such as an RF-based classifier, which has been developed in this study and (ii) comparing with the human clinicians' diagnostic accuracy. Experimental results show that RF-based classifier shows lesser accuracy (63%), compared to VIRDOCD (75%) (refer to Table 8 and Figures 5a and 5b) , based on the RMS value. While comparing the diagnostic accuracy with human (doctor), study has shown that their overall clinical diagnostic accuracy is about 71.4% (Richens, Lee, & Johri, 2020) . Hence, VIRDOCD, for this dataset performs the best. Both as a diagnostic tool and also as a medical aid, digital healthcare is under the radar. The last two decades have seen increasing implementation of Statistical Machine Learning (SMI) tools to assist clinical practices in screening, diagnosing and grading an illness. However, no study has utilized clinicians' rulebased 'learning' while arriving at a prediction by analyzing the weighted sign-symptoms to conclude on the probability of a disease, or its severity grade. In other words, no work has been reported that has attempted to quantify and then translate the 'clinical eye' of a human physician into data-validated diagnosis. The analytics within the proposed tool (VIRDOCD) is based on experience-based weighing of the sign-symptoms, then combining them towards a cumulative outcome as a probabilistic conclusion, that we call as the 'medical diagnosis' (Chattopadhay, 2013) . The follow-up therapeutic routine is based on the correctness of the diagnosis. For more complicated cases involving a team of clinicians in a medical board, the specialists first independently analyze the sign-symptoms and then take an arithmetic mean across the board to converge to a unified opinion. Bulk of the relevant literature analyze patient data based on their arbitrary choice of classifiers without attempting to causally link their algorithms with deductive reasoning from the human clinicians. There is also the curse of subjectivity. Classifiers failing with a certain dataset are not necessarily crippled against all datasets, and vice versa. These limitations has traditionally coerced against realistic implementation of computational diagnostics in a real medical setup. The present study is an attempt to develop an SMI-based tool (VIRDOCD) that applies the rule base of the human clinicians (weighted sign-symptoms and possible grade of the illness) and hence can better serve as a diagnostic aid to clinicians in screening and grading Dengue cases. VIRDOCD is structured on recursive MLR that requires training the algorithm with weighted patient data (assigned by a group of doctors), and then combining the individual diagnostics to identify a human error-free diagnostic decision. Table 1 shows the sign-symptoms of a cluster of 100 dengue infected (at various levels) patients that are initially trained on 80% data, then performance tested against human judgments. Robustness in the decision making process is a key target that we measure by examining whether the final outcome from VIRDOCD suffers from judgmental bias introduced by the training rules, or are genuinely neutral. The agreement with predictions from a specialist medical board (10 senior clinicians) confirms that the algorithm works and is actually more accurate. Its performance is further validated against another regression-based classifier, developed using RF algorithm, and found to be superior to it, as well as against the overall predicting accuracy of human clinicians. Although MLR is apparently a (computationally) 'hard' technique, yet, the coefficient values (refer to equation 5 and Table 5 ) vary across the weighted datasets that are influenced by the statistical properties of the data, such as its distribution, pattern, interconnectedness amongst the attributes (ANOVA, refer to Table 4 ), and statistical significance (p-values with CI 95%). It is important to note that the MLR algorithm in VIRDOCD has been developed relying on the inherent malleability of the coefficient values. Therefore, the algorithmic 'hardness' has been effectively reduced. Coefficient values derived from VIRDOCD, therefore, can clone human-like perception rather than mechanized numbers. Finally, VIRDOCD's robustness has been tested through parametric studies, where some parameters weights were kept constant varying others. To our satisfaction, VIRDOCD was able to retain its judgmental individuality (refer to Table 7 & 8) . Statistical methods such as ANOVA and MLR are useful techniques to develop a predictive epidemic model. ANOVA provides insights into the data structure by analyzing the 'intra' and 'inter'-group variations, data distribution, and effect of each predictor (sign-symptoms) on disease outcome (fatality grade/severity). On the other hand, MLR-based predictive modeling throws light on how 'fit' the model is, and how each predictor influences outcome prediction. VIRDOCD (virtual doctor) is an MLR-based predictive model (a new doctor) that is able to learn through the rule base (Clinical eyes) of human doctors, develop its own 'understanding' (by the Coefficient values obtained through MLR process). and finally develop its own Clinical eye (product of its understanding and the rule base given by the human doctors). Thus it combines the best of both worlds. Comparing the diagnostic accuracy of VIRDOCD (ca 75%) with another regression-based classifier (RF, ca 63%) and human clinical diagnoses at 71.4% (Richens, Lee, & Johri, 2020) , the measure seems well balanced and trained for accurate prediction. Another important feature of VIRDOCD is its ability to retain its non-biased attribute in decision making, unlike human doctors who are likely to show subjective fluctuations in their patient evaluation. Work is ongoing to introduce a chromatic RGB-styled sign-symptom grading, which can vary continuously between 0 and 1 to make medical predictions objectively subjective. We are in the process of introducing 'stochastic assessment kernels' before and after VIRDOCD data training that could then distribute numbers within these intermediate regimes generalizing the 3-point scale to a higher dimensional construct. None DATA AVAILABILITY STATEMENT: The data used in this work have been collected and curated by a team of clinicians, including Dr S Chattopadhyay. These are real human data and hence confidential that cannot be shared even anonymously due to hospital data embargo. All codes used in this work have been personally written by Dr S Chattopadhyay using Python 3.8.3 and Spyder editor version 4.1.5 in Windows 10 Pro 64 bits OS, Processor -Intel (R) Core (TM) i5 3360M CPU@ 2.80GHz, 8GB RAM. Data presented in plots may be personally shared on request. 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