key: cord-0915056-mtfrib9q authors: Andrejko, Kristin L; Pry, Jake; Myers, Jennifer F; Openshaw, John; Watt, James; Birkett, Nozomi; DeGuzman, Jennifer L; Barbaduomo, Camilla M; Dong, Zheng N; Fang, Anna T; Frost, Paulina M; Ho, Timothy; Javadi, Mahsa H; Li, Sophia S; Tran, Vivian H; Wan, Christine; Jain, Seema; Lewnard, Joseph A title: Predictors of Severe Acute Respiratory Syndrome Coronavirus 2 Infection Following High-Risk Exposure date: 2021-12-21 journal: Clin Infect Dis DOI: 10.1093/cid/ciab1040 sha: 8d9566429a0a298642c212159f6244adf1f43161 doc_id: 915056 cord_uid: mtfrib9q BACKGROUND: Non-pharmaceutical interventions (NPIs) are recommended for COVID-19 prevention. However, the effectiveness of NPIs in preventing SARS-CoV-2 transmission remains poorly quantified. METHODS: We conducted a test-negative design case-control study enrolling cases (testing positive for SARS-CoV-2) and controls (testing negative) with molecular SARS-CoV-2 diagnostic test results reported to California Department of Public Health between 24 February–12 November, 2021. We used conditional logistic regression to estimate adjusted odds ratios (aORs) of case status among participants who reported contact with an individual known or suspected to have been infected with SARS-CoV-2 (“high-risk exposure”) ≤14 days before testing. RESULTS: 751 of 1448 cases (52%) and 255 of 1443 controls (18%) reported high-risk exposures ≤14 days before testing. Adjusted odds of case status were 3.02-fold (95% confidence interval: 1.75–5.22) higher when high-risk exposures occurred with household members (vs. other contacts), 2.10-fold (1.05–4.21) higher when exposures occurred indoors (vs. outdoors only), and 2.15-fold (1.27–3.67) higher when exposures lasted ≥3 hours (vs. shorter durations) among unvaccinated and partially-vaccinated individuals; excess risk associated with such exposures was mitigated among fully-vaccinated individuals. Cases were less likely than controls to report mask usage during high-risk exposures (aOR = 0.50 [0.29–0.85]). The adjusted odds of case status was lower for fully-vaccinated (aOR = 0.25 [0.15–0.43]) participants compared to unvaccinated participants. Benefits of mask usage were greatest among unvaccinated and partially-vaccinated participants, and in interactions involving non-household contacts or interactions occurring without physical contact. CONCLUSIONS: NPIs reduced the likelihood of SARS-CoV-2 infection following high-risk exposure. Vaccine effectiveness was substantial for partially and fully vaccinated persons. Strategies aimed at preventing severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) transmission during contact between infectious and susceptible individuals have been critical to the mitigation of the coronavirus disease 2019 (COVID- 19) pandemic. While vaccines effectively reduce individual risk of infection and severe disease [1] [2] [3] , nonpharmaceutical interventions (NPIs) continue to be recommended in various circumstances. These include within populations ineligible for vaccination, in settings where vaccines remain inaccessible or underutilized, and in response to emergence of SARS-CoV-2 variants with increased transmissibility. Efforts to prevent transmission include social distancing and avoiding direct physical contact with nonhousehold members [4] ; interacting with nonhousehold members outdoors [5] ; and use of face coverings to filter virus-containing droplets and aerosols [6, 7] . However, evidence demonstrating the effectiveness of various NPIs in mitigating transmission risk remains limited [8, 9] . Understanding of exposures mediating SARS-CoV-2 transmission stems largely from anecdotal reports with unknown generalizability [10] . Additionally, many assessments of the effectiveness of NPIs have been ecological studies comparing COVID-19 incidence before and after implementation of multiple interventions [11] [12] [13] , making it difficult to distinguish independent effects of each strategy [14] . While numerous studies demonstrate that face masks limit the quantity of virus shed into the environment by infectious individuals [15, 16] , few have assessed real-world effectiveness of face masks in preventing SARS-CoV-2 infection [6] . Improved understanding of aspects of social contact that exacerbate or reduce risk of SARS-CoV-2 transmission are needed to guide intervention prioritization [17, 18] . To mitigate transmission of SARS-CoV-2, California mandated social distancing and wearing of facial coverings in spring 2020 and implemented a tiered system for closure and reopening of public places based on community-level measures of SARS-CoV-2 transmission and hospital utilization [19] . Statewide social distancing and mask mandates among vaccinated people in most public places and the tiered system were relaxed on 15 June 2021, when roughly 57% of eligible Californians were considered fully vaccinated [19, 20] . However, amid rising incidence of COVID-19 and increases in hospitalizations following emergence of the Delta (B.1.617.2) variant [21, 22] , measures encouraging or requiring face masks in certain indoor settings regardless of vaccination status were reinstated on 17 July 2021 [23] . We initiated a retrospective, test-negative design case-control study to understand risk factors for SARS-CoV-2 infection in California and inform public health strategies [1] . Here, we address predictors of SARS-CoV-2 infection among participants who reported high-risk exposures, defined as social contact with an individual known or suspected to have been infected with SARS-CoV-2, within 2 weeks preceding participants' SARS-CoV-2 tests. California residents with confirmatory, molecular SARS-CoV-2 diagnostic test results reported to the California Department of Public Health between 24 February 2021 and 12 November 2021 with a recorded phone number were eligible for inclusion. Each day, trained interviewers called potential participants selected at random from all individuals with test results reported in the preceding 48 hours. Cases were persons with a positive molecular SARS-CoV-2 test result, and controls were persons with a negative result. We enrolled cases equally across 9 regions of the state (Supplementary Table 1 ). For each enrolled case, interviewers attempted to enroll 1 control matched to the case by age group, sex, region, and week of SARS-CoV-2 test from a list of ≥30 randomly selected controls who met these criteria. Individuals were eligible to enroll if they provided informed consent in English or Spanish and had not received a previous diagnosis of COVID-19 or positive test result for SARS-CoV-2 infection (molecular, antigen, or serological test). Additional sampling and enrollment details have been described elsewhere [1] . The State of California Health and Human Services Agency Committee for the Protection of Human Subjects approved the study protocol as public health surveillance. Trained interviewers administered a standardized phonebased questionnaire to assess exposures (Supplementary Text 1, Survey). This analysis included participants who reported they were potentially exposed to SARS-CoV-2 <14 days prior to their test through social contact with an individual known or suspected by the participant to have been infected with SARS-CoV-2 at the time of their interaction ("high-risk exposure"). Participants were asked to specify if they were aware that 1 or more of these individuals had been a confirmed case, based on receipt of a positive diagnostic test result for SARS-CoV-2 infection. Among participants who reported exposure to a confirmed or suspected COVID-19 case during the 14 days prior to their test, interviewers systematically collected characteristics of the exposure including setting (any indoor exposure vs outdoor exposure only), duration (whether contact lasted ≥3 hours), whether the participant and the contact had any physical contact, whether the contact was a member of the participant's household, and use of face coverings by the participant and the contact during the interaction(s). Additionally, all study participants were asked to indicate their reasons for seeking SARS-CoV-2 testing, including any symptoms experienced in the 14 days preceding their test. Interviews also recorded participants' self-reported history of visiting other locations, including restaurants, bars, coffee shops, retail shops, public gyms, salons, movie theaters, or worship services; participating in social gatherings; and using ride share services, public transportation, or air travel. Interviewers recorded the COVID-19 vaccination status of participants, including the manufacturer and dates of all doses received, and asked participants to describe their level of concern about the COVID-19 pandemic in the 14 days prior to seeking SARS-CoV-2 testing. To convey descriptive features of the enrolled sample, we summarized demographic attributes and exposure characteristics among participants enrolled in the study using proportions. Our primary inferential objective was to identify characteristics of high-risk exposure events associated with SARS-CoV-2 infection. We fit conditional logistic regression models to estimate adjusted odds ratios (aORs) and accompanying 95% confidence intervals (CIs) of various exposure attributes, comparing cases with controls. These included exposure setting (any indoor exposure vs outdoor-only exposure), exposure duration (any exposure ≥3 hours vs <3 hours), whether the exposure involved a potentially infectious household member(s) (vs nonhousehold contact(s) only), the nature of exposure (any physical contact vs no physical contact), and mask usage by the participant or their contact during the entire interaction (vs mask usage by neither party). Models included interaction terms between each contact attribute and the vaccination history of the participant at the time of their test to assess effect modification. We considered participants tested >14 days after receipt of 2 doses of BNT162b2 (Pfizer/BioNTech) or mRNA-1273 (National Institutes of Health/Moderna) or 1 dose of JNJ-78436735 (Janssen Pharmaceutical Companies) to be fully vaccinated. Others reporting receipt of any COVID-19 vaccine doses before their test date were considered partially vaccinated. To correct for differences in infection prevalence over time and across regions, independent of the specific exposures being analyzed, regression strata (ie, matching sets) were defined by the reopening tier of participants' county of residence at the time of testing or, for the period after 15 June 2021 (when the tiered reopening system was retired), by participants' month of SARS-CoV-2 testing. We further controlled for potential confounders including demographic variables (age, sex, and region), participants' self-reported level of anxiety about the COVID-19 pandemic prior to seeking SARS-CoV-2 testing, and participants' self-reported attendance at community settings (as listed above) that may have been associated with risk of SARS-CoV-2 exposure. As a sensitivity analysis, we repeated these primary analyses within only the subset of participants who reported contact with a confirmed case. To further verify that findings did not owe to confounding between risk-mitigating behaviors and test-seeking, we repeated the analyses within the subset of participants who cited contact with a COVID-19 case as a primary motivation for their decision to receive a test. To identify determinants of the effectiveness or impact of mask usage in mitigating transmission, we also undertook secondary analyses estimating the aOR of mask usage among cases vs controls within subsets of participants who reported distinct types of high-risk exposures [24] . Consistent with our primary analyses, these included indoor and outdoor exposures, exposures lasting ≥3 hours and <3 hours, exposures to potentially infected individuals who were and were not members of participants' households, and exposures with and without physical contact. We further estimated the aOR of mask usage separately among fully vaccinated and partially vaccinated or unvaccinated participants. Conditional logistic regression models for these analyses followed the framework described above and included interaction terms between each exposure characteristic and mask usage by participants or their contacts. Last, we aimed to test the hypothesis that attributes of highrisk exposure including face mask usage predicted the severity of illness among SARS-CoV-2-infected individuals [25] [26] [27] . Here, we restricted our analytic sample to cases testing positive for SARS-CoV-2. As a measure of severity, we considered whether participants reported any type of consultation with a healthcare provider (eg, virtual or outpatient appointment, emergency room attendance, or hospitalization) in conjunction with testing. We estimated aORs of each exposure characteristic, comparing cases who received clinical care to those who did not, using conditional logistic regression models following the same framework described above. We conducted analyses in R software (version 3.6.1). Between 24 February 2021 and 12 November 2021, we enrolled 2891 participants, including 1448 cases and 1443 controls. In total, 1006 participants, including 751 cases (52% of 1448) and 255 controls (18% of 1443), reported high-risk exposure within 14 days before testing, including 833 (83% of 1006) with confirmed and 173 (17% of 1006) with suspected exposure (Table 1, Supplementary Tables 2 and 3 ). Most participants reported that their high-risk exposure occurred within their household (55% of 847) or workplace (14% of 847) (Supplementary Table 4 ). A majority of these participants (788 of 1006; 78%) listed high-risk exposure as a motivation for testing. In total, 600 (60% of 1006) indicated that they experienced symptoms, and 319 (32% of 1006) cited symptoms as a primary motivation for testing (Supplementary Table 5 ). Among 1006 participants reporting high-risk exposure, 880 (87%) reported contact occurring indoors, 728 (72%) reported contact lasting ≥3 consecutive hours, 594 (59%) reported physical contact with the individual known or suspected to have been infected, and 559 (56%) indicated their contact was a household member. Participants who reported interactions occurring indoors, lasting ≥3 hours, or involving physical contact were generally more likely to have been enrolled after 15 June or to have resided in counties within less-restrictive reopening tiers at the time of their test than those who reported outdoor, shorter, or nonphysical contact ( Table 2) . The majority (816 of 1006; 81%) of participants reporting high-risk exposure indicated that both they and their contact did not wear a mask during the interaction (Table 3) . Mask usage did not differ substantially among participants by age, region, income strata, or in association with vaccination status. However, a higher proportion of individuals who reported unmasked interactions were non-Hispanic Whites (382/816; 47%) in comparison with participants reporting masked interactions (59 of 188; 31%). Most enrolled participants were unvaccinated (649 of 1006; 65%) at the time of testing; 8% (83 of 1006) and 22% (217 of 1006) were partially or fully vaccinated, respectively. Vaccination coverage varied over the study period, reflecting the continuous rollout of vaccination over time. Among unvaccinated or partially vaccinated participants, cases were more likely to report high-risk exposures involving a potentially infected household member, occurring indoors, lasting ≥3 hours, or where either they or their contact did not wear a face mask ( Figure 1 , Supplementary Table 6 ). Adjusted odds of contact having occurred indoors, having lasted ≥3 hours, In contrast, we did not identify an association between case status and whether participants reported physical contact with the individual known or suspected to being infected. The association of each of these exposures with case status was mitigated among fully vaccinated participants, as indicated by lower point estimates of the aOR for each exposure among fully vaccinated participants compared with other participants. Estimated aORs were similar in models restricted to participants who specified that their contact was confirmed to have been infected with SARS-CoV-2 at the time of their interaction and among individuals who indicated this exposure was a primary motivation for testing (Supplementary Tables 7 and 8 , Supplementary Figure 1 ). Among study participants, 14% of cases (101 of 749) and 34% of controls (87 of 255) reported mask usage during the high-risk interaction (aOR = 0.50; 95% CI, .29-.85; Figure 2 ). Estimated effect size estimates did not differ appreciably according to whether masks were worn exclusively by participants or their contacts, although analyses were underpowered to demonstrate significant effects within each of these strata or to make comparisons across them (Supplementary Figure 2) . However, mask usage was protective when both parties reported mask usage during the interaction (aOR = 0.50; 95% CI, .26-.96). Adjusted odds of cases status were lower for both partially (aOR = 0.30; 95% CI, .16-.60) and fully vaccinated (aOR = 0.25; 95% CI, .15-.43) participants relative to unvaccinated participants. Protective effects of mask usage by either participants or their contacts differed according to several characteristics of exposure events. Mask usage was protective among participants reporting exposures to infected individuals outside their household (aOR = 0.39; 95% CI, .22-.70), exposures that occurred without physical contact (aOR = 0.37; 95% CI, .20-.69), and indoor exposures (aOR = 0.51; 95% CI, .28-.93; Figure 3 ). In contrast, we did not identify significant protective effects of mask usage when exposure involved an infected household member, involved physical contact, or occurred outdoors. Among unvaccinated or partially vaccinated participants; 13% of cases (80 of 600) and 36% of controls (47 of 130) reported mask usage during the interaction; and adjusted odds of mask usage were 0.47-fold (95% CI, .26-.86) as high among cases compared with controls. Among fully vaccinated participants, 12% of cases (15 of 123) and 32% of controls (30 of 94) reported mask usage during the interaction, and adjusted odds of mask usage were 0.60-fold (95% CI, .24-1.50) as high among cases compared with controls. Among 751 cases testing positive for SARS-CoV-2 who reported high-risk exposures, 187 (25%) indicated receiving healthcare beyond testing alone ( Table 4 ). The aOR for mask usage during high-risk interactions was 0.69 (0.36-1.34) for cases who sought care with a medical provider compared with cases who did not. The proportion of cases experiencing symptoms likewise did not vary according to whether high-risk exposures involved a household member, involved physical contact, occurred indoors or outdoors, or lasted <3 hours or ≥3 hours. Similarly, neither the likelihood of experiencing symptoms nor the number of symptoms that participants reported experiencing differed according to these exposure attributes ( Supplementary Tables 9-11 ). Among participants in our study who reported recent highrisk exposures, use of face masks was associated with reduced Recent high-risk exposure is defined as reported contact with an individual known or suspected to have been infected with severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) at any time within the 14 days before participants were tested. Covariates with significant associations at a 2-sided P < .05 type 1 error rate include age (P = .01), income (P = .004), county reopening tier (P < .001), vaccination status (P < .001), and symptoms (P < .001), based on the χ 2 test. Percentages presented in the table should be interpreted to represent the proportion of cases or controls with each characteristic and not their prevalence within the general population. Among fully vaccinated participants, excess infection risk associated with exposure characteristics including unmasked contact, indoor contact, physical contact, and contact with a household member was mitigated. While associations between risk-reducing behaviors and test-seeking may be of concern in test-negative design studies of SARS-CoV-2 infection, our analyses controlled for participants' self-reported levels of concern about the COVID-19 pandemic, and our findings held in sensitivity analyses restricted to individuals who reported that concerns about their high-risk exposure were a primary reason for test-seeking. These findings may inform the use of NPIs in populations with limited vaccine access or those ineligible to be vaccinated, as well as in response to changing epidemiologic conditions such as emergence of variants associated with enhanced infectiousness. Table 4 . Counts for cases and controls differ from those listed in Table 1 because some participants indicated that they did not know these details about their known or suspected contact and because of missing data on vaccination status among cases (N = 8) and controls (N = 18). Abbreviations: aOR, adjusted odds ratio; CI, confidence interval. Protective effects of mask-wearing in differing high-risk exposure contexts. aORs computed using conditional logistic regression models adjusting for vaccination status of respondent, community exposures (listed in main text), characteristics of the high-risk contact, level of coronavirus disease 2019 anxiety prior to testing, and participants' age, sex, and region of residence. An interaction term was included between mask usage and the contact attribute in 5 separate models. Regression strata were defined for county reopening tiers and week of severe acute respiratory syndrome coronavirus 2 test. The aOR represents the aOR for case status comparing mask usage within each category (with respect to relationship, physical/nonphysical nature of contact, indoor/outdoor exposure, duration, and participant vaccination status). Abbreviations: aOR, adjusted odds ratio; CI, confidence interval. Adjusted odds ratio (aOR) computed using logistic regression models restricted to cases who reported high-risk contact. Differences between total values (N) in the top row and sums of participants according to each exposure characteristic reflect missing data. Models adjusted for vaccination status of respondent, community exposures (listed in main text), characteristics of the high-risk exposure (as listed in Figure 1 ), and participants' age, sex, and region of residence. The aOR represents the aOR for healthcare receipt among cases, according to the indicated attributes of high-risk exposure events reported by participants. We present the mean number of symptoms experienced among cases stratified by mask usage in Supplementary Table 9 during the high-risk exposure. Supplementary Table 10 indicates the presence of symptoms and mean number of symptoms, respectively, according to other attributes of the high-risk exposure. Supplementary Table 11 presents aORs for symptoms as an alternative measure of severity. Percentages presented in the table should be interpreted to represent the proportion of cases or controls with each characteristic and not their prevalence within the general population. Whereas mask usage was protective in interactions where participants reported no physical contact with a potentially infectious individual, we did not identify protection in interactions where physical contact was made. Mask usage was also less clearly protective when participants were exposed to a potentially infected member of their own household. This finding may reflect the difficulty of adhering to stringent masking over periods of extended or repeated exposure, as may occur among household members [28, 29] . Our analysis provided the strongest evidence of benefits of masking for unvaccinated participants, although we also estimated 40% lower odds of infection associated with mask wearing among fully vaccinated participants. While this estimate did not exclude the possibility of no effect, analyses within the fully vaccinated stratum were underpowered due to the low numbers of participants experiencing post-vaccination infections. Contrary to prevailing hypotheses [24] , we did not identify strong evidence of associations between measures of infection severity and the likelihood for cases to report unmasked, indoor, long-lasting, or physical interactions with their potentially infected contacts. While bias may have occurred if individuals' decision to wear masks was associated with their likelihood of seeking testing when asymptomatic or minimally symptomatic, receipt of care in a clinical setting provides a more objective indication of infection severity. Direct measurement of SARS-CoV-2 exposure intensity and clinical status was not possible under this design. However, based on our observations, realworld effects of masking and other nonpharmaceutical mitigation measures may have greater impact on individuals' risk of infection than their likelihood of experiencing symptoms, once infected. Studies in animal models have likewise provided inconsistent support for the hypothesis that reducing SARS-CoV-2 exposure dose may lower the risk of severe disease, given infection [26] . While the test-negative design that we used in this analysis has historically been used primarily for studies of pathogen-specific interventions such as vaccines [30, 31] , several features of our study design make this design applicable for NPIs, despite their potential for effects on multiple respiratory pathogens. Restricting our analytic sample to individuals who came into contact with COVID-19 cases during the 14 days before testing supports our effort to assess how features of known or suspected SARS-CoV-2 exposure events affect transmission of SARS-CoV-2 specifically. Furthermore, because transmission of respiratory pathogens other than SARS-CoV-2 has remained at historically low levels in California and much of the United States throughout the COVID-19 pandemic [32, 33] , the likelihood for other infections to cause test-seeking within our study population is low. Additional factors that may have modified the likelihood of transmission during high-risk exposure could include the vaccination status of infected contacts [34] , the type of masks or face coverings used [35] , the physical distance individuals maintained while interacting, and ventilation of indoor spaces where interactions occurred. Obtaining reliable information on these details of each interaction was not feasible through retrospective interviews with participants. While our sample size was not powered to distinguish between protection associated with masking by participants, their contacts, or both parties, confounding may also arise if the decision to wear masks was influenced by factors we did not measure, including contacts' vaccination status. This may bias effect size estimates from our study toward the null, along with several other factors including exposure misclassification resulting from our reliance on selfreported behaviors, imperfect knowledge of contacts' infection status, and the possibility that participants were infected through interactions other than the high-risk exposure events analyzed. Our findings provide real-world evidence that NPIs including mask usage reduce risk of SARS-CoV-2 transmission when infectious and susceptible individuals come into contact. We also demonstrate substantial vaccine effectiveness against SARS-CoV-2 in the context of high-risk interactions, suggesting such exposures are not associated with heightened risk of vaccine failure. Study participants were mainly enrolled prior to the Delta variant becoming the predominant SARS-CoV-2 lineage in California. Nonetheless, multiple observational studies have confirmed persistence of vaccine protection against SARS-CoV-2 infection despite the emergence and circulation of new variants [36] and high vaccine effectiveness against severe outcomes including hospitalization and death when post-vaccination infections occur [37] . Amid efforts to increase vaccine uptake as a primary public health strategy, our findings indicate NPIs can protect unvaccinated persons and may also be valuable for vaccinated persons as measures to reduce SARS-CoV-2 transmission. Supplementary materials are available at Clinical Infectious Diseases online. 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Conflicts that the editors consider relevant to the content of the manuscript have been disclosed.