key: cord-0869394-m5nio5ns
authors: Zahedi, Amir; Seif, Faezeh; Golshan, Masoumeh; Khammar, Alireza; Rezaei Kahkha, Mohammad Reza
title: Air Surveillance for Viral Contamination with SARS-CoV-2 RNA at a Healthcare Facility
date: 2022-05-24
journal: Food Environ Virol
DOI: 10.1007/s12560-022-09524-1
sha: 0797234407035b0181febc400be4c89861c11b3f
doc_id: 869394
cord_uid: m5nio5ns

The transmission pathway of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2 also called COVID-19 disease) in indoor environments are the main area of contention between health systems and scientists. In this context, little has been investigated about the collection of airborne viral shedding. Here, we collected air samples from 24 locations inside the sole COVID-19 patient care center in Zabol, Iran, for screening SARS-CoV-2 RNA from March to May 2021. Locations included the ICU, COVID-19 wards (CWs) rooms, corridors, nearby nurses’ stations, and toilets. We identified the SARS-CoV-2 RNA in breathing zone of CW, in room air, with the positivity rate of 2.5% at a concentration of 17 × 10(3) virus genome copies/m(3) air. It also investigates the relationship between local climate conditions [i.e., temperature and relative humidity] and COVID-19 transmission with the evolution of daily official data on the number of new cases, hospitalizations, and deaths. Current data explained that the difference of temperature and humidity may affect the behavior of virus along with other factors, i.e., population density, individual viral shedding, and infectious dose of SARS-CoV-2 (both indoor and outdoor). Our data support the potential SARS-CoV-2 airborne transmission indoors suggesting the specific safety assessment of building to improve ventilation solutions besides proper using face masks and extensive public health interventions.

Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) revealed in the late 2019 in Wuhan, China, has been the greatest challenges faced by the healthcare system today. The disease called COVID-19 tends to increase the incidence as it overwhelms all attempts at containment and dedicates around, at the time of writing, 182,041,196 infected cases with over 3,698,158 deaths across the world (https:// hgis. uw. edu/ virus/). Despite repeated infection spread events with different mutations, country after country, the major transmission pathways of SARS-CoV-2 still need to be potentially clarified to better improve infection prevention and control (IPC) policies for healthcare workers (HCWs) and the general public, especially in super-spreading events (Hadei et al., 2020; Lewis, 2020; Noorimotlagh et al., 2021; Ong et al., 2020) .

Recent works had been shown that this virus could be transmissible through air and was capable of causing infection for long periods Liu et al., 2020; Morawska & Cao, 2020a; Tang et al., 2020) . However, there is still no sufficient evidence to compel airborne precautions. In a study by Santarpia et al. (2020) , 63.2% of air samples in rooms and 58.3% in hallways of hospital wards treating COVID-19 patients were positive by reverse transcription polymerase chain reaction (RT-PCR) which was more supported by the evidences of virus culture from the hallway sample. The authors concluded that risk of infection was extensive in the vicinity of the patients, none of whom had cough. By using a VIVAS air samplers based on water vapor condensation method, Lednicky et al. (2020a) reaffirmed the occurrence of viable airborne SARS-CoV-2 virus, both at 2 and 4.8 m from patients with viable virus count range between 6 and 74 TCID 50 units per liter of air. More importantly, the model of spread of viable SARS-CoV-2 corresponding to a mildly ill with COVID-19 during driving a car with closed windows and air conditioner ON suggested the airborne transmission in vehicles excluding air recirculation in such situations (Lednicky et al., 2021) . Therefore, on November 5, 2020, the US CDC accepted the plausibility of airborne particles in propagation of COVID-19 (CDC, 2020) . Accordingly, to minimize the airborne transmission of virus, Morawska and Milton (2020b) recommended the measures include (1) providing fresh outdoor air indoors with much higher exchange rates, if possible, and reducing use of air recirculation, (2) infection risk reducing in ventilation systems using germicidal ultraviolet lights and air filtration (HEPA filters), and (3) complete inhibition of crowding in public places. With the supply of entirely negative pressure ventilation and using personal protective equipment (PPE) in COVID-19 ward (CW) locations, lower air sample positivity for SARS-CoV-2 RNA (6%) was observed as opposed to nursing station in the non-COVID-19 ward (17%) where overcrowded by staffs, indicating the congregation of personnel as an important factor in the airborne transmission of the virus in wards not necessarily reserved for COVID-19 patients and inadequately ventilated. The authors stated that there is a lack of data yet on the effectiveness of control approaches of airborne SARS-CoV-2 in prevention of COVID-19 in hospitals (Stern et al., 2021b) . Collectively, these studies indicated that the virus can be transmitted as small airborne aerosol particles (< 5 µm) formed during coughing, sneezing, breathing, or talking of an infected and/or susceptible individual with COVID-19, thus enabling its longer travel distance and deep deposition in lungs. Consequently, environmental air sampling gives us substantial evidences to better recognize the airborne transmission and even reemergence risk of virus allowing to stem the chain of future transmission.

In Iran, the study in the largest hospital in March 2020 did not confirm the presence of SARS-CoV-2 RNA in any of the ten air samples taken from various wards of the intensive care units (ICUs) at approximately 2-5 m away from the bed of hospitalized COVID-19 patients (Faridi et al., 2020) . They highlighted this knowledge gap whether the transmission of airborne virus is important for the spread of COVID-19. To tackle this question, strong evidence and field experience are needed. Here, we investigated the environmental contamination of air by SARS-CoV-2 in respiratory hospital wards in Zabol, southeastern of Iran.

Sina Hospital is the sole COVID-19 patients care center situated in a separate building inside of Amir-al-Momenin Hospital campus in Zabol city, Sistan and Baluchestan province, Iran (31° 2′ N 61° 39′ E). For advanced diagnosis of the disease, firstly patients with involvement in computed tomography (CT) scans were hospitalized to Sina Hospital and then immediately were tested for SARS-CoV-2 RT-PCR assay by the hospital. As the number of hospitalized patients on May 10, 2021, increased, two additional wards: back-up CW1 (BCW1) and back-up CW2 (BCW2), were opened to reduce the density of patients.

Air samples in the ICU, CWs rooms, corridors, nearby nurses' stations, and toilets ( Fig. 1S ) were collected as of March 8th through May 12th, 2021. Sampling was performed with midget impingers (SKC Inc., US) which are the most widely used air samplers for collecting aerosolized viable viruses (Pan et al., 2019) . For each sample collection, pre-autoclaved impinge was located at 1.5-1.8 m above the ground to represent the breathing zone in the wards and approximately 2-5 m from the patients' beds within 2 h. As a consequence, a total volume of 180 lit of air was collected using a vacuum pump model (224-PCMTX8, DELUXE, SKC Inc., US) at a flow rate of 1.5 L/min into 5 ml viral transport medium (VTM) per sample. After the 2-h collection time, the remaining volume of the viral medium was about 2 ml due to evaporation which was aseptically transferred to a sterile microtube, sealed with parafilm, and stored at 4 °C prior to immediately transfer to the laboratory (less than 30 min), where samples were immediately stored at − 20 °C for the subsequent analyses. A total of 39 air samples were collected. Each sampling event was started before routine cleaning and disinfection of the areas around 7:30 AM. Indoor air relative humidity (RH, %) and temperature (°C) were measured during sampling by Temperature and Humidity meter GM1361.

In this study, viral RNA was extracted using the Roje Technologies kit (Pishgam, Iran), according to the manufacturer's instructions. Purified RNA eluted from the RNA-binding silica column in a volume of 60 µl. Realtime quantitative RT-PCR (RT-qPCR) assay was performed using Pishtaz Nucleic Acid Diagnostic kit (Pishtaz Teb, Zaman, Iran) for the nucleocapsid N and RdRp genes of SARS-CoV-2, according to the manufacturer's protocol. 20 µl (final volume) reaction was prepared with 5 µl of purified RNA and 15 µl One-Step RT-qPCR master mix containing a mixture of primers and TaqMan probes for detecting the SARS-CoV-2N and RdRp genes. Amplifications and subsequent analyses were performed by Applied Biosystems Step One plus RT-PCR System. The cycling conditions were reverse transcribed at 50 °C for 20 min, an initial denaturation at 95 °C for 3 min, followed by 45 cycles of 94 °C for 10 s, and 55 °C for 40 s. A sample with cycle threshold (Ct) value of below 40 was regarded as positive. For the Ct values between 40 and 45 cycles, the PCR was repeated. The negative control runs were performed during each experiment, while a positive control template was used for each assay to evaluate the RNA extraction method that had been worked appropriately with 24 and 28 Ct values for RdRp and N genes, respectively. The use of positive control template is essential to confirm the SARS-CoV-2 testing via RT-PCR assay for detecting the adequate performance of nucleic acid extraction, the presence of contamination, and inhibition of the reverse transcription and amplification reactions. Moreover, 2019-nCoV Positive Control (nCoVPC) containing in vitro transcribed RNA was utilized to evaluate the performance of RT-qPCR process in each detection run with 18 and 20 Ct values for RdRp and N genes, respectively. PCR efficiency (E) is reported to be 95% by the respective manufacturer. The limit of detection using this COVID qPCR kit is about 200 copies/ml.

In order to attain the air viral RNA concentration (the number of viral gene copies per m 3 air) from the measured Ct values, a 6-log standard curve was used by tenfold dilutions of DNA template of the SARS-CoV-2N and RdRp genes that had been obtained from Pishtaz kit manufacturer. The data were fit using the equation (Eq. 1):

where y = Ct value, GC is genome copies, and (a) and (b) are the slope and the intercept of the regression line, respectively. According to the standard curve, (a) and (b) levels were obtained as follows: The gene copy concentration was then obtained from the following steps:

(1) 60 μl of total sample RNA purified from 140 μl sample (a 140-µl aliquot was initially taken for nucleic acid extraction) was divided by 5 μl of the purified RNA used in each RT-qPCR to attain the number of gene copies equivalents per 140 μl.

(1) GC = 2 (y−b)∕a

(2) Then, the number of gene copies obtained from Eq. (1) based on the measured Ct levels was multiplied by (60/5) to attain the number of gene copies and finally that number divided by 180 L (the volume of air sampled in 2 h) to attain the number of gene copies per liter of sampled air to report as copies/m 3 air.

Multiple linear regression analysis was employed to assess the effect of regional meteorological parameters on the risk of COVID-19 cases during the fourth wave of COVID-19 pandemic in Zabol, with the number of cases as a dependent variable and temperature and relative humidity as independent variables (Luo et al., 2020; Oliveiros et al., 2020; Sajadi et al., 2020 

In the present study, we detected SARS-CoV-2 in air samples (1 of 39, 2.5%) collected from COVID-19 in-patient wards in Zabol (Tables 1, 2) . Positive sample was observed on May 11 in the CW Room 15 (a two-bed room housing one patient in bed 16) at a concentration of 17 × 10 3 copies/m 3 air (Fig. S1a ). The remaining locations at corridors, patient's rooms, nursing stations, and toilets in CW, BCW1, BCW2, and ICU did not confirm positive samples. The bed 16 was associated with a patient aged 34 years without cough and was ready to discharge at the time of air sampling collection, indicating the air contamination with SARS-CoV-2 RNA inside patients' room from a mild COVID-19 patient emanating high viral loads in a poor ventilation conditions. Positive room air samples related to SARS-CoV-2 RNA have been reported in CWs Kenarkoohi et al., 2020; Liu et al., 2020; Santarpia et al., 2020; Stern et al., 2021a) . This result contradicts the study from Hong Kong where all air samples were tested negative for SARS-CoV-2, despite the samplers were placed inside a shelter covered around COVID-19 patients at the distance of 10 cm from patients' chin in order to increase the collection efficiency of exhaled virus and avoid from the effect of environmental air flow (Cheng et al., 2020) . Similarly, study in Wuhan No. 7 Hospital also did not report positivity for viral RNA in air samples (Wu et al., 2020) .

Finding concentration in air samples may be due to the production mechanisms of smaller viral particles (2.5-10 μm) through speaking instead of coughing or desiccation of respiratory droplets (Stern et al., 2021b) , which could remain as an airborne infection for 16 h (Fears et al., 2020) and could be carried for long distances. We observed that the patient often was talking on her cell phone during sampling, supporting the hypothesis that SARS-CoV-2 could be shed from a patient via exhaled breath particles which might cause increased environmental risk of airborne transmission (Ma et al., 2021) . A great deal of variability in emission rates Buonanno et al. (2020) showed more than 100 quanta emission rates released from an asymptomatic infector in walking mode to fewer than one quanta emission rate from a symptomatic infector in resting mode. The necessity of using a surgical mask by the hospitalized patients is then approved (Cheng et al., 2020) .

The SARS-CoV-2 concentration in CW (17 × 10 3 copies/ m 3 ) was close to the maximum concentration reported by Lednicky et al., 2020a; Ma et al., 2021; Santarpia et al., 2020) , but much higher than compared to Stern et al., 2021a Stern et al., , 2021b , (< 100 copies/m 3 ) regardless of procedure and volume of air collected (Table 3 ). The reasons for the discrepancy may in fact be the differences between hospitals. Moreover, as mentioned above due to variability of individual viral shedding, the rate and performance of the ventilation can influence the virus concentration in the air to a low or zero . Despite observing high concentration, the positivity rate in our study was lower (2.5%) compared to those in Wuhan (62.8% or 22/35 air samples) , Kuwait (8.7% or 13/150 air samples) (Stern et al., 2021a) , and USA (66.7 or 4/6 air samples) (Lednicky et al., 2020a) . It might be because of lower COVID-19 prevalence during sampling event in Zabol between March 8 and May 12, 2021 (before the fourth wave of COVID-19 pandemic) (Fig. 1) and opening the additional CWs (as of May 10, 2021, at the beginning of the fourth wave) to decrease the density of patients. Stern et al. (2021b) concluded that the air positive detected samples correlated positively with the increasing new COVID-19 cases in the community. These results show the early detection of virus in the public can avoid massive infection by identifying pre-symptomatic and asymptomatic individuals through executing the actions such as easily available of testing and quarantine. Also, we did not investigate SARS-CoV-2 spread in other hospital areas (non-CWs) but the existence of SARS-CoV-2 was proved in the air environment where a crowd congregated such as outside the hospital entrances (2 copies m −3 ) (Stern et al., 2021a) , hallway of non-CW (Santarpia et al., 2020) , the nurse's station of non-CWs (about 47 copies m −3 ) (Stern et al., 2021b) , department stores inside of the hospital (11 copies m −3 ) , or inside of a car (3.14 × 10 4 copies m −3 ) (Lednicky et al., 2021) , inside of the Heating, Ventilation, and (Sousan et al., 2021) , the public places and transportation facilities (Hadei et al., 2021) , and at homes of infected individuals (de Man et al., 2021) .

None of ICU, BCW1, and BCW2 samples were positive due to the open windows and large amount of dilution by high wind speed (Figs. S1b, S1c and S1d), which highlights the critical role of fresh airflow in removing exhaled virusbearing air (Ma et al., 2021; Qian et al., 2021) . In contrast, work by Guo et al. (2020) explained the different distribution of virus in open cubicles air in the ICU substantiating the abundant presence of SARS-CoV-2 surrounding near-floor exhaust, making it difficult to interpret airborne aerosols. Natural ventilation appeared to be effective at containing airborne SARS-CoV-2 contamination Wu et al., 2020) and windows opening are the only way to improve air exchange rates and establishment of cross flows through the building (REHVA, 2020). It was observed that the ventilation conditions in Sina Hospital include negative pressure corridors and toilets through vents installed on the ceiling, while in rooms there was central ceiling-type air conditioning with no exhaust vents in any rooms. Unlike the other wards, more poorly ventilated condition with always all windows closed in CW (for security problems), worst of all in room 15 which had no window, and was weak in ventilation airflow and receiving natural sunlight (Table 1 and Fig. S1a ) resulted in a long-range airborne transmission in this room creating increased infection exposure to HCWs contributing to further propagation of the disease. Epidemiologic investigations of super-spreading events indicated that poor ventilation environments led to high number of secondary infections from one super-spreader during the COVID-19 epidemic (Nishiura et al., 2020) , especially the super-spreading event in Guangzhou restaurant, in China, was because of airborne transmission where windows could not be opened and ventilation was only performed by available air conditioning systems, with almost the outdoor air ventilation rate of 0.75-1 L/s/person .

Researchers found that the number of COVID-19 cases correlated with temperature and humidity conditions (Bukhari & Jameel, 2020) . Experimental SARS-CoV-2 aerosols are known to remain infectious for 90 min under different environmental conditions, i.e., temperature between 19 and 22 °C and 40-60% of RH (Smither et al., 2020) which is representative of typical closed environments. As shown in Table 1 , the SARS-CoV-2 positive sample occurred at the room with condition of RH 41.5% and temperature 24 °C, while at lower RH (11.3-20.2%), samples were all negative. This observation is consistent with previous studies, which have demonstrated that the SARS-CoV-2 virus presence and concentration in air is related to air-affecting factors (Aganovic et al., 2021; Ahlawat et al., 2020; Dabisch et al., 2021) and reported the presence of SARS-CoV-2 at RH condition of 40-50% and temperature of about 20-25 °C (Table 4 ). Lin and Marr (2019) found that at low RH (≤ 43%), the evaporation rate was high; therefore, viral droplets became excessively dry and formed into smaller particles suspending during long times and migrating farther distances based on ventilation conditions. In contrast, at high RH, the deposition rate was a major factor due to the hygroscopic growth phenomenon causing the droplets to became big and heavy that can be removed from the airflow direction according to their mass. Toward this end, ventilation improvement solutions to best airborne infection control and The single positive sample in our study was not sufficient for statistical analysis; therefore, we evaluated the relationship between regional relative humidity (in the range of 9-62%), temperature (in the range of 5.7-41.2 °C), and new COVID-19 cases, hospitalizations, and deaths in Zabol city to associate environmental factors and increased risk of COVID-19 using six months of daily data (as of February 20 to August 23, 2021). Over the association analyses, temperature steadily increased such that an increase of temperature of 1.9 ˚C caused an increase of 0.28 in the risk of new daily cases in Zabol (P < 0.001) (Table 5) . Conversely, 0.3 reduction in RH led to 0.2 increase in the risk of COVID-19 cases; however, this association was not statistically significant (P = 0.14). The highest hospitalized cases were related to higher temperature (P < 0.001) ( Table 5 ). These results are in agreement with other studies that concluded that the infection risk (SARS-CoV-2 cases) correlated inversely with humidity (Ahmadi et al., 2020; Gupta et al., 2020; Luo et al., 2020; Ravelli & Martinez, 2021; Sajadi et al., 2020) . Similarly, Oliveiros et al., (2020) reported that temperature was correlated positively while humidity was correlated inversely with doubling time of the number of COVID-19 cases in China using linear regression analysis. On the other hand, researchers have demonstrated an inverse relationship between air temperature and number of COVID-19 cases (Kulkarni et al., 2021) , suggesting that one standard deviation increase in air temperature would result in a 0.08 lower COVID-19 transmissibility. However, the effect of humidity on the increase of SARS-CoV-2 virus in the outdoor is inconsistent with indoor, this indicates that it may be because of the large contamination attained in the population. On the other words, it is the peak that matters and needs the execution of extensive public health interventions. We also observed the same pattern for the death cases, i.e., higher temperature increased the death cases (P < 0.001), but RH had a negative correlation with deaths (P = 0.047) ( Table 6 ). Current data explained that 

Unfortunately, we did not determine the replicability (viability) of the virus identified in the air due to budget limitations and for that reason, the level of inhalation of airborne SARS-CoV-2 to cause infection (infectious dose; TCID 50 ml −1 ) was unclear. Viability should be characterized by tissue culture. Lednicky et al. (2020a) isolated SARS-CoV-2 in room air samples in concentration of 94 × 10 3 copies m −3 with higher infectious dose of 2.68 × 10 5 TCID 50 ml −1 , which estimated 74 viruses require to cause infection in one liter of air. The authors also isolated the viable virus in the smallest particles (0.25-0.5 µm) from inside a car with COVID-19 driver (Lednicky et al., 2021) . Moreover, in our study, we were unable to obtain data on air exchanges rates during sampling, and therefore, it was not clear whether the WHO minimum requirements of ventilation rate were met (160 L/s/patient or 12 air changes per hour (ACH) for aerosol generation procedure areas and 60 L/s/patient or 6 ACH for others) (WHO, 2021) . In addition, the effect of airflow distribution and direction associated with air exchanges in different regions of the building on air viral load in positive samples as well should be carefully considered. Future studies of identification of wrong airflow direction resulting from poor construction quality would benefit the viral RNA persistence in the respiratory care settings.

The discovery of airborne SARS-CoV-2 expelled into the air of a patient room was further clarified the needs for environmental and engineering monitoring of the respiratory care settings. Our results highlighted the importance of poorly ventilated but not necessarily crowded spaces as a risk factor in persisting SARS-CoV-2 RNA generated by the patients. This may explain the role of indoor air condition as a major risk factor in transmission of SARS-CoV-2. 

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The authors would like to thank the staff of Sina Hospital and also Imam Khomeini Hospital for their assistance in sampling period. We gratefully acknowledge the Health Deputy of Zabol University of Medical Sciences and Meteorological Organization for providing daily COVID-19 cases' reports and meteorology data. This work was financially supported by Zabol University of Medical Sciences.