key: cord-0837513-ocxc0r2d authors: Carter, Oliver W. L.; Xu, Yingjian; Sadler, Peter J. title: Minerals in biology and medicine date: 2021-01-06 journal: RSC advances DOI: 10.1039/d0ra09992a sha: 8d78284f4c8af85402d10fbbb8375da963262d47 doc_id: 837513 cord_uid: ocxc0r2d Natural minerals (‘stone drugs’) have been used in traditional Chinese medicines for over 2000 years, but there is potential for modern-day use of inorganic minerals to combat viral infections, antimicrobial resistance, and for other areas in need of new therapies and diagnostic aids. Metal and mineral surfaces on scales from milli-to nanometres, either natural or synthetic, are patterned or can be modified with hydrophilic/hydrophobic and ionic/covalent target-recognition sites. They introduce new strategies for medical applications. Such surfaces have novel properties compared to single metal centres. Moreover, 3D mineral particles (including hybrid organo-minerals) can have reactive cavities, and some minerals have dynamic movement of metal ions, anions, and other molecules within their structures. Minerals have a unique ability to interact with viruses, microbes and macro-biomolecules through multipoint ionic and/or non-covalent contacts, with potential for novel applications in therapy and biotechnology. Investigations of mineral deposits in biology, with their often inherent heterogeneity and tendency to become chemically-modified on isolation, are highly challenging, but new methods for their study, including in intact tissues, hold promise for future advances. Until recently, it was commonly believed that the chemistry of life is organic chemistry, and that inorganic chemistry (mineral chemistry) is conned to the inanimate world. Nowadays it is clear that although the chemistry of carbon is of course crucial, at least 18 other elements are essential for mammalian life. 1 For several metals, the genetic codes for proteins which control their absorption, transport, distribution and excretion from the body are becoming well understood. Remarkably, 10% of the expressed genes in the human genome code for zinc proteins, with zinc playing a key role in transcription factors and a wide range of proteins and enzymes. Other essential trace d-block metals with vital roles in enzymes include Mn, Fe, Co, Cu and Mo, along with the more mobile bulk alkali and alkaline earth metals Na, K, Mg and Ca. The latter have key roles in the transmission of nervous impulses, membrane potentials, muscle contraction, energy metabolism, protein synthesis, cell replication, skeletal structures, and many other biochemical pathways. Whether it will be possible to recognise genetic codes for all the essential elements is an intriguing question. Probably it will not, bearing in mind that proteins are never totally selective for particular metal ions. Here we focus on the roles of minerals in biology and medicine. We use selected examples to highlight both the natural roles of minerals (e.g. in bones, teeth, balance organ in the inner ear), their use in medicine (e.g. phosphate binding, ion exchange), in biotechnology (e.g. extraction and purication of DNA), as well as the potential for the discovery of new medicines based on novel target recognition mechanisms. Within the concept of multi-site recognition of targets, we also discuss oligomeric metal complexes and metallopolymers. Knowledge of natural biomineralisation processes has led to laboratory procedures using organic templates to fashion nanominerals. The mechanisms of inorganic morphosynthesis have been summarised by Mann and Ozin: deposition on patterned materials (preorganised organic architectures and templates), co-assembly of inorganic precursors, organic molecules and aggregates (e.g. micelles), metamorphic reconstruction, and microphase separation. 2 Such mineral engineering has much potential for the design of novel materials for a variety of uses. 3 This article was written during lockdown phases of COVID19, a period during which the urgent need to discover new medicines, especially for treatment of viral infections, became even more evident. 4 2. Natural Chinese mineral medicines -'stone drugs' Although the potential for the use of minerals in drug design has yet to be widely explored in modern pharmacology, the medicinal value of minerals and other 'stone drugs' has been recognised in China for >2000 years. 5 Indeed, the use of minerals and other natural substances is central to Traditional Chinese Medicine (TCM). The Chinese scientist Tu Youyou, winner of the 2015 Nobel Prize for Physiology or Medicine for her discovery of the antimalarial artemisinin isolated from a herb, is a Professor at the China Academy of Traditional Chinese Medicine. Chinese universities with programs in TCM oen house extensive collections of mineral drugs. A few examples from Guizhou University of Traditional Chinese Medicine are shown in Fig. 1 . Concha Hallotidis (abalone shell) consists of predominantly microscopic calcium carbonate (usually calcite and aragonite) tiles stacked like bricks interwoven with a small amount ( À12 and number of addenda atoms #22) the activity correlates with the total net charge. 91 POMs exhibiting the highest activity towards Helicobacter pylori are mostly Keggin-type POTs, polyoxovanadotungstates and large highly negatively-charged POMs, whereas in the case of Streptococcus pneumoniae, the most active POMs were ascribed to be polyoxovanadates, especially decavanadate, which was also very active against other bacteria. Applications of inorganic POMs in medicine are currently limited by their toxicity and the lack of detailed knowledge about their mode of action. Many POMs are thermodynamically and kinetically unstable in physiological media and degrade into a mixture of products. Cation-uptake and exchange in POM and POM-based compounds have been categorized as: (i) POMs as inorganic crown ethers and cryptands, (ii) POM-based ionic solids as cation-exchangers, and (iii) reduction-induced cation-uptake in POM-based ionic solids, based on redox-activity and multi-electron transfer occurring reversibly in multiple steps. 92 This speciation problem is a challenge for future investigations. Not only the intact POM, but each constituent of a POM may play a role in its activity. Aluminium adjuvants have been added to billions of doses of vaccines for over 90 years, and are administered to millions of people annually. 93 However, the mechanism by which they boost the effectiveness of vaccines is very poorly understood. 94 It has been suggested that aluminium adjuvants enhance the delivery of the co-adsorbed antigens to dendritic cells, as well as increasing antigen presentation. 95 The importance of this application is highlighted by the current (2020) urgency of developing an effective vaccine against the pandemic caused by SARS-CoV-2. Aquated (Fig. 15 ) is a g-Al 13 Keggin cluster formed during hydrolysis and by aggregation of natural and synthetic Al-oxyhydroxides, and is very well characterized. 97 Moreover, ligand exchange reactions are relatively slow on Al(III), 98 with aging of polymeric species and formation of larger polynuclear complexes taking place on timescales of hours to days. 99 Typical insoluble adjuvants are Al(O)OH (e.g. Alhydrogel®) and Al(OH) x (PO 4 ) y (e.g. Adju-Phos®), aggregates of 10-50 nmsized particles. The surface adsorption properties of these nanoparticles towards antigens and protein components of the vaccines are probably key to their adjuvant activity. 93 The interactions of living cells and biomolecules with mineral surfaces can be of several types: non-covalent binding, e.g. electrostatic (ionic), hydrophobic/van der Waals, H-bonds, and covalent, e.g. coordination bonding. Interactions between cells and minerals are likely to be multipoint because of the repeating nature of the mineral structure. Some cells, e.g. bacteria, utilise excreted reducing or oxidizing agents so as to erode the surface and utilise mineral components for energy and as nutrients. They may also excrete a metal chelating agent, such as a siderophore which binds to iron and delivers it into the cell. Some microorganisms are involved in the weathering of minerals in rocks, soils and sediments, and can also mediate the formation of biominerals. 100 There is structural evidence for the interaction between hydroxo/oxo minerals and the serum protein transferrin (Tf), which transports iron to cells, and its bacterial analogue ferric ion binding protein (Fbp), which transports iron across the periplasm of Gram-negative bacteria. 101 Fbp is a virulence factor in microorganisms such as Neisseria gonorrhoeae. 102 The involvement of transferrin in the transport of a range of metal ions is potentially important for understanding the transport of metallodrugs, diagnostic agents, radioisotopes, and toxic metal ions. 101 Iron-loaded Fe(III) 2 -Tf is recognised by a specic receptor on cells and transported into cells in endosomes, where the Fe(III) is released at ca. pH 5.6, and the receptor is recycled. The 679-amino acid, 80 kDa glycoprotein Tf, present in serum at ca. 30 mM, binds Fe(III) much more tightly than Fe(II) in a cle in each of its 2 lobes, which are connected by a short peptide linker. The Fe(III) ligands are 2 Tyr, 1 Asp and 1 His, as well as an important so-called 'synergistic anion', which in native Tf is carbonate. The open cle closes once the carbonate is bound. Binding of Tf to a mineral surface can change the shape of the protein. On a freshly cleaved mica (KAl 2 (AlSi 3 -O 10 )(OH) 2 ) surface, Tf contracts from its average 'native' (X-ray crystal structure) of ca. 8 nm to ca. 2.5 nm. 103 Fbp (34 kDa, 309 amino acids) has a structure similar to one of the two lobes of serum transferrin. Fbp also uses 2 Tyr (tyrosinate) ligands to bind Fe(III), and one His, but now also Glu and a synergistic anion such as phosphate. The protein effectively integrates metal-binding groups in the side-chains of amino acids into mineral structures as illustrated by the X-ray crystal structures of Fbp containing fragments of the hafnium(IV) mineral HfO 2 and (oxy/hydroxy)iron minerals. Fbp can be crystallized with tri-and pentanuclear oxo-Hf 3 and oxo-Hf 5 clusters which resemble fragments of the mineral HfO 2 , in an open binding cle. 104 These clusters are anchored by binding to tyrosinate oxygens (Fig. 16) , which can also be capped by phosphate. Similarly, bound trinuclear Fe 3 O 4 (Fe 3 O 13 ) oxo-Fe(III) clusters can be characterized in X-ray structures. 105 Both serum and bacterial transferrins can bind a range of other 3+ and 4+ multinuclear complexes strongly, such as Zr(IV) and Ti(IV). 106 There is a wide variety of metals in the brain, including weakly binding and fast-moving Na + and K + ions. Brain neurons transmit signals using a ow of Na + and K + ions through metal-specic ion channels, producing an electrical spike (action potential). The channels include a Na + /K + pump which uses the energy of one ATP to exchange 3 intracellular Na + ions for 2 extracellular K + ions. 107 Mg 2+ and Ca 2+ also have specic membrane pumps, but are less mobile and involved in stronger protein and enzyme binding. 108 Notably, Mg 2+ at millimolar concentrations also binds to DNA and ATP, and has a major function in blocking the Ca 2+ channel in the (N-methyl-daspartate) NMDA receptor. 109 NMDA is an agonist for glutamate, the neurotransmitter which normally acts at that receptor. Manganese, iron, cobalt, copper, zinc and molybdenum also play important roles in the brain. Manganese enzymes include superoxide dismutase and glutamine synthetase, and Cu(I) and Zn(II) form clusters in brain metallothionein MT3. 110 Metallothioneins are small cysteine-rich proteins (typically one third Cys from a total of ca. 60 amino acids) which are ubiquitous in cells and contain clusters of Zn(II), Cd(II) and Cu(I) bridged by thiolate sulfurs (Fig. 17) . 111 Multi-iron centres are ubiquitous in the brain and elsewhere in the body. Iron-sulfur clusters, with sulde and cysteine thiolate coordination e.g. Fe 4 S 4 cubane structures consisting of four Fe(II)/Fe(III) ions bridged by suldes and further coordinated to cysteine thiolate sulfurs to give 4-coordinate Fe (Fig. 17) , serve as redox centres in many proteins and biochemical pathways. 112 Nearly 30 years ago, strongly magnetic particles of magnetite (Fe 3 O 4 ) were detected in the human brain, 5 million singledomain crystals per gram in most tissues. 113, 114 Some of these particles have been described as pollutant magnetite particles <$200 nm in diameter, which can enter the brain directly via the olfactory bulb. Iron accumulation and oxidative stress appear to be early events in the development of Alzheimer's disease. Analysis of brain tissue by Scanning Transmission Xray Microscopy (STXM) reveals mixed oxidation states of neuronal iron deposits associated with neuromelanin clusters in Parkinson's disease substantia nigra. 115 Iron is stored in cells as the mineral ferrihydrite, Fe(III)(O) OH, with some incorporation of phosphate. Storage of ca. 4500 Fe(III) ions occurs inside the shell of the protein ferritin, which consists of 24 ca. 20 kDa subunits, a diameter of ca. 10 nm (Fig. 16 ). 116 Fe(II) is taken up through channels between the subunits and is oxidised to Fe(III) before it enters the mineral core. The co-aggregation of peptide b-amyloid (Ab) and ferritin resulting in the conversion of ferritin's inert ferric core into more reactive low-oxidation-state iron phases may play a role in Alzheimer's disease. 117 X-ray spectromicroscopy and X-ray magnetic circular dichroism studies have revealed that amyloid plaque cores (APC) are associated with diffuse iron, and dense iron deposits incorporating ferrous iron, as well as the mixed-valence iron oxide magnetite (Fe 3 O 4 ). Intriguingly, evidence consistent with the presence of zero-oxidation state iron has been reported. 118 Moreover, calcium deposits were also observed within APC, including evidence for mineralizationplaque calcication and calcium carbonate deposition. 118 Inorganic chemistry (mineral chemistry) was once widely considered to be relevant only to non-living organisms, in contrast to the chemistry of carbon, organic chemistry. However, we now know that life would not exist without inorganic chemistry and the essentiality of at least 18 elements in addition to carbon. Here we have highlighted the need to widen the exploration of the biological and medicinal chemistry of minerals because they offer potential for the discovery of the causes of disease and scope for the design of novel therapies, as well as applications in biotechnology. However, the chemistry and biochemistry of minerals is dynamic and very diverse. They have inherently heterogeneous structures, relating to both their surfaces and their bulk composition. Their compositions can change with time by metal cation and anion exchange, on wide timescales. Even polymorphs having the same chemical composition, but different packing arrangements, can have different biological properties (e.g. calcium carbonate crystals in the inner ear, Fig. 6 ). Although the study of minerals presents signicant challenges, recent advances in technology promise to open up new understanding of their formation, reactions, and properties, including studies in native biological environments. These include synchrotron X-ray methods (e.g. nano-focussed X-ray uorescence), laser-ablation-ICP-MS, electron microscopy (e.g. atomic resolution TEM), mass spectrometry (e.g. nano-SIMS), and radio-tracing/imaging using beta-and gamma-emitting radioisotopes. Some minerals have very high lattice energies and are relatively inert in terms of their overall frameworks. Examples include clinically-approved lanthanum carbonate for the lowering of phosphate levels in the body, which act by carbonate-phosphate exchange, and zirconium cyclosilicate for controlling potassium levels by cation exchange in pores. There is much scope for the design of other such therapeutic minerals. In contrast, some minerals are highly toxic, including the silicate asbestos, and nickel subsulde. The reasons for their toxicity are not fully understood, but may be related to both their surface properties and exchange/release of the bulk components. The release of redox-active transition metals, such as iron and copper, from minerals can be a source of toxicity, especially iron release from asbestos (chrysotile). 119 The calcium phosphate mineral hydroxyapatite plays vital roles in bones and teeth, but also its surface properties can be controlled to provide widely used chromatographic supports for separation of DNA and RNA oligomers, proteins, and viruses via multipoint recognition. Design of such mineral particles for therapy should be further explored. We have discussed an example of a molecular mechanism for the recognition of minerals by proteins, oxo/hydroxo-metal complexes in the iron binding cle of the iron transport proteins serum transferrin and bacterial ferric ion-binding protein. Such binding has been demonstrated for higher oxidation state (acidic) metal ions such as Ti(IV), Zr(IV) and Hf(IV), as well as Fe(III). Deprotonated phenolates from protein tyrosines can anchor mineral fragments by forming coordination bonds. Investigations are now needed as to whether such interactions can occur in intact biological systems, and if so, what are the consequences? Understanding the roles of metals in the brain promises to shed new light on a range of poorly understood conditions such as senile dementia, Parkinson's, and Alzheimer's diseases. Particularly intriguing is the discovery of nanomineralization in the brain, and even deposits of low oxidation state iron, metallic Fe(0). It will be challenging to elucidate the chemistry and biochemistry of such species, especially in intact brain tissue. Traditional Chinese Medicine (TCM) has long led the way in exploring the potential for use of minerals in medicine. Now modern molecular pharmacology can use all the techniques and methods currently available, including genomics and proteomics (metallomics) and state-of-the-art metal speciation and imaging to reveal new roles for metal minerals in disease and therapy, which is exciting for future research. There are no conicts to declare. Arsenic: Chemistry, Occurrence, and Exposure in Handbook of Arsenic Toxicology Element-tracing of mineral matters in Dendrobium officinale using ICP-MS and multivariate analysis Pharmaceutical composition containing selected lanthanum carbonate hydrates Zirconium compound deoderant and antiperspirant, US Pat.US2498514A, United States Pat. Off Public Health Image Library (PHIL), accessed 22 Polyoxometalates active against tumors, viruses, and bacteria Vaccine Adjuvants: Methods and Protocols Biology of the NMDA Receptor We thank the EPSRC (grant no. EP/P030572/1, EP/N033191/1 and PhD CASE Award for OWLC) and GoldenKeys High-Tech Materials Co., Ltd. (Jin Zhi Jian Gao Ke Ji Cai Liao You Xian Gong Si), for their support of a PhD CASE award for OWLC. We are also very grateful to Guizhou University of Traditional Chinese Medicine for hosting Peter Sadler's visit and tour of their excellent exhibition museum of traditional Chinese medicines in October 2018. We also thank ChimeraX, CCDC, The Materials Project, Wikipedia, Claudia Blindauer, Allen Elster and Chris Schaller for help with and access to materials for gures.