key: cord-0706279-wlx3rwsz
authors: Schneider, Uffe Vest; Holm, Mona Katrine Alberthe; Bang, Didi; Petersen, Randi Føns; Mortensen, Shila; Trebbien, Ramona; Lisby, Jan Gorm
title: Point-of-care tests for influenza A and B viruses and RSV in emergency departments – indications, impact on patient management and possible gains by syndromic respiratory testing, Capital Region, Denmark, 2018
date: 2020-11-05
journal: Euro Surveill
DOI: 10.2807/1560-7917.es.2020.25.44.1900430
sha: 72098372b68523ecb7830fafcada10479124c780
doc_id: 706279
cord_uid: wlx3rwsz

BACKGROUND: Point-of-care tests (POCT) for influenza A and B viruses and respiratory syncytial virus (RSV) were implemented in emergency departments of all hospitals in the Capital Region of Denmark in 2018. AIM: To establish whether POC testing for influenza viruses or RSV is based on a valid respiratory symptom indication, whether changes in patient management based on a positive result are safe and whether syndromic POC testing may benefit patients with influenza or RSV. METHODS: Samples from 180 children (< 18 years) and 375 adults tested using POCT between February and July 2018 were retested for 26 respiratory pathogens. Diagnosis, indication for POC testing, hospitalisation time, antimicrobial therapy and readmission or death within one month of testing were obtained from patient records. RESULTS: A valid indication for POC testing was established in 168 (93.3%) of children and 334 (89.1%) of adults. A positive POCT result significantly reduced antibiotic prescription and median hospitalisation time by 44.3 hours for adults and 14.2 hours for children, and significantly increased antiviral treatment in adults. Risk of readmission or death was not significantly altered by a positive result. Testing for 26 respiratory pathogens established that risk of coinfection is lower with increasing age and that POCT for adults should be restricted to the influenza and RSV season. CONCLUSION: Positive POCT resulted in changed patient management for both children and adults, and was deemed safe. POCT for additional pathogens may be beneficial in children below 5 years of age and outside the influenza and RSV season.

Over a dozen different platforms for target amplification-based point-of-care tests (POCT) are now available through several different companies [1] . Studies have evaluated the benefits of POC testing for respiratory pathogens on patient management [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] , but their conclusions are conflicting and the benefits for patient management are therefore not fully understood. Several studies found that POC testing may improve patient management by deferring hospital admission [3] , reducing hospitalisation time [4, 5] , improving targeted use of antiviral treatment [4, [6] [7] [8] [9] 12] , reducing prescription [10] and duration of antibiotic treatment [5] , reducing in-hospital isolation time [8] , improving use of side room isolation facilities [6] and decreasing overall costs of hospitalisation [3, 5, 12, 13] . In contrast, other studies reported that POC testing for respiratory pathogens does not significantly reduce prescription or duration of antibiotics [4, [7] [8] [9] 11] , do not reduce hospitalisation time or defer admissions [7] [8] [9] and do not reduce the risk of death or readmission [4, 7, 8] .

In January 2018, routine POC testing for influenza A and B viruses and human orthopneumovirus (formerly respiratory syncytial virus, RSV) was implemented at all hospital emergency departments in the Capital Region of Denmark. Quality assurance was established by retesting the POCT samples for 20 viral and six bacterial respiratory targets at the National World Health Organization (WHO) Influenza Laboratory, Department of Virus and Microbiological Special Diagnostics, Statens Serum Institut (SSI), Copenhagen, Denmark. Accuracy and error rates of the POCT were determined for bedside use by emergency department clinical personnel or laboratory technicians (under review). Several concerns were raised [14] in connection with the implementation of POC testing for influenza A and B viruses and RSV [14] . It has been suggested that indication for POCT would increase as clinicians got access to a fast and low-complexity bedside test, which could lead to unnecessary testing and added expense without any added clinical benefit. Questions have also been raised as to whether clinicians would act on a positive test result and change patient management, and whether such changes would be safe for patients [14] .

It is also unknown whether testing for additional respiratory pathogens using POCT would benefit patients and if so, which patients should be offered this testing. We aim to evaluate data for the first 6 months following the introduction of POCT in the Capital Region of Denmark to establish whether such testing is conducted based on a valid respiratory symptom indication. We also aim to examine whether clinicians safely use positive POCT results to change patient management by comparing treatment of POCT positive patients with POCT negative patients. Additionally, we identify which other viral and bacterial pathogens can be detected in the patient samples, and whether a positive syndromic test result for these pathogens could potentially influence patient management. Finally, we consider scenarios in which syndromic POCT may be of added benefit to POC testing for influenza A and B viruses and RSV in order to improve patient management.

This clinical impact study compared positive POCT results with negative POCT results. Consecutive patient samples (n = 555) tested for influenza A and B viruses and RSV using the cobas Liat system (Roche Diagnostics, Hvidovre, Denmark) between February and July 2018 were included in the study. The test period was restricted to the first 6 months after POCT implementation to ensure a fast assessment and allow necessary changes in instructions for clinical personnel to be implemented, and allow access to the cobas Liat instruments prior to the following influenza and RSV season from week 40 2018 to week 20 2019.

Patients were tested for influenza A and B viruses and RSV by POCT if the attending physician found the patient to be likely to have influenza A or B or RSV infection based on the clinical presentation of the patient.

Data regarding age at sampling, sex, sample date, time and date for admission to and discharge from hospital, initiation and type of antibacterial or antiviral treatment on admittance to hospital, readmission or death within 1 month of previous hospitalisation, lung X-ray within 24 hours of a POCT and clinical diagnosis were extracted from the patients' electronic record. Patients were considered children if they were under 18 years of age at time of sampling.

For some patients, clinical diagnosis was established retrospectively as no diagnosis had been registered in the electronic patient record. A clinical diagnosis was established by one of the medical doctors authoring this manuscript and verified by another medical doctor. This was done by accessing the POCT result and reviewing additional clinical results documented in the electronic patient record including: lung X-ray, lung stethoscopy, temperature, oxygenation, clinical respiratory symptoms, reported pain, leucocytosis and C-reactive protein level. Other diagnostic relevant information recorded for individuals > 18 years of age was the CURB-65 score (confusion, blood urea nitrogen, respiratory rate, blood pressure and age 65 or older). For one child, no clinical diagnosis had been reported and data in their electronic patient record were limited and indicated other or no infection. Their diagnosis was therefore registered as not available.

Clinical diagnosis was recorded either as: a viral respiratory tract infection (RTI); bacterial RTI; a RTI that could not be differentiated as either bacterial or viral; another infection not originating from a respiratory focus; or no infection at all based on the clinical diagnosis in the electronic patient record.

Indication for POC testing was considered valid if any respiratory symptoms were reported in the electronic patient record either as a patient-reported symptom or established as part of an objective examination e.g. by inspection of cavum oris or lung stethoscopy of the patient or by X-ray of the thorax.

Samples were collected and tested locally by emergency department clinical personnel or laboratory technicians at all four hospitals (three emergency departments and one paediatric emergency department), in the Capital Region of Denmark. After testing, the remaining sample material was sent to the Department of Clinical Microbiology at Hvidovre University Hospital and forwarded to the Danish National World Health Organization (WHO) Influenza Laboratory, Department of Virus and Microbiological Special Diagnostics, Statens Serum Institut (SSI), Copenhagen, Denmark.

At SSI, samples were tested in single real-time PCR , rhinovirus and RSV. Assays are laboratorydeveloped tests quality assured according to the quality programme provided by the WHO. Total nucleic acids were extracted from 200 µL of patient sample after the addition of PolyA (0.05 mg/mL) as a carrier (Roche Diagnostics) by a MagNa Pure 96 extraction robot using the MagNa Pure 96 DNA Viral NA small volume kit, the 'plasma small volume protocol', and an elution volume of 100 µL (Roche Diagnostics). Real-time PCR was performed using either an MX3005P (Stratagene, Agilent Technologies, Glostrup, Denmark) or an ABI 7500 (Applied Biosystems, ThermoFisher Scientific, Slangerup, Denmark) real-time system. For each assay, 5 µL of extracted nucleic acids was used in a total reaction volume of 25 µL.

Statistical analysis was performed using MS Excel, MedCalc online version (MedCalc software, Ostend, Belgium) and Social Science Statistics (socscistatistics. com). Descriptive data are reported as number and percentage of individuals. Age in years and hospitalisation time in hours are reported as median with interquartile range (IQR).

Comparison of proportions was performed by 'N-1' chi-squared test and comparison of medians was performed by two-tailed Mann-Whitney U test, with level of significance at p < 0.05.

Collection of patient data for quality assurance and development of treatment was granted according to Danish legislation by the board of directors at Hvidovre University Hospital (application WZ19001024-2019-30) and data were anonymised and used for statistical analysis according to the regulation. 

A positive POCT result for influenza A or B viruses or RSV was significantly associated with a viral or mixed viral/bacterial RTI diagnosis in both children and adults (p < 0.0001) ( Table 2) .

Significantly more adult patients with a positive POCT result were treated with oseltamir (p < 0.0001) and significantly fewer with antibiotics (p < 0.0001) than those adults with a negative POCT result ( Table 2 ). An added benefit was significantly reduced hospitalisation time for adults (p < 0.0001) and children (p < 0.017) with a positive POCT result compared to a negative POCT result (a median of 16.3 hours (IQR: 2.6-75.3) vs 60.6 hours (IQR: 11.3-142.2) for adults, respectively, and a median of 1 hour (IQR: 0.0-27.1) vs 15.2 hours (IQR: 1.4-42.2) for children, respectively). Risk of readmission or death within 1 month of discharge and the likelihood of having a lung X-ray performed within 24 hours of a POCT was almost equally distributed between POCT-positive and -negative patients ( Table 2 ).

When tested for the 20 viral and six bacterial pathogens included in Table 3 , 56.2% (312/555) of all POCT samples were positive for one or more pathogen.

In children below 2 years of age, 60.7% (74/122) were positive for one pathogen, whereas 23.0% (28/122) were positive for multiple pathogens (23 for two pathogens, four for three pathogens and one for four pathogens). The rate of coinfection of pathogens diminished with age. Among 2-5 year olds, two children were found to be positive for either three or four pathogens. From 6 years of age and older, all coinfections were caused by two pathogens (Table 3 ). In children below 2 years of age, the most prevalent findings were rhinovirus, RSV, human mastadenovirus A-G, enterovirus and human respirovirus 3, whereas influenza A virus and influenza B virus were only rarely detected in this age group (Table 3 ). Influenza B virus was predominately detected in adults and influenza A(H1N1)pdm09 virus was most prevalent in children aged 2-5 years, with a declining prevalence in the older age groups and among the children below 2 years. Influenza A(H3N2) virus predominated in children above 5 years of age and in adults (Table 3) . Seven influenza A virus-positive samples were non-typeable after amplification and sequencing at SSI. No further attempts were conducted to identify the influenza A virus subtype. The most prevalent pathogens detected between February and April were influenza B virus, influenza A virus, RSV and hMPV, all of which were not detected in May to July 2018 (Table 4) .

Rhinovirus, human respirovirus 3, human mastadenovirus A-G and enterovirus were detected most frequently in May to July indicating the season differences between different respiratory pathogens (Table 4 ).

Syndromic testing for 26 other respiratory pathogens was compared with POC testing for influenza A and B viruses and RSV and is presented in Table 5 . A significantly shorter hospitalisation time (1.0 vs 16.0 hours, p = 0.024) and significantly fewer antibiotics (3.8% vs 17.1%, p = 0.020) were observed for children with a positive POCT result for influenza A and B viruses and RSV compared to children positive for other respiratory viruses (Table 5) . A similar effect on hospitalisation time in adults was not observed, even though those with a positive POCT result for influenza A and B viruses and RSV received significantly fewer antibiotics (p < 0.0001) compared with adults positive for other viruses (Table 5 ).

The risk of excessive use of POCT for detecting respiratory pathogens is frequently mentioned as a concern when considering placing POCT for bedside use by It is therefore recommended to restrict the use of POCT for respiratory testing to relevant time periods based on the seasonal variation of the pathogens included in the assay used for the POCT [15] . It may also be beneficial to introduce an electronic prompt question for clinical signs of respiratory infection when ordering the POCT to increase the likelihood of a valid indication for POCT.

Previous studies agree that POCT for respiratory infections improve the targeted use of antiviral treatment [4, 6, 8, 9, 12] , which is also supported by the present study. In contrast, the effect on prescription and duration of antibiotic treatment and hospitalisation time is debatable [4, 5, [7] [8] [9] [10] [11] . Most studies support that prescription and duration of antibiotic treatment is not significantly reduced by POC testing [4, [7] [8] [9] , and three studies found no reduction in duration of hospitalisation [7] [8] [9] . These studies looked at the effect of a POCT intervention using the Biofire FilmArray PCR system (Biomerieux, Saint-Louis, US), which analyses samples in central laboratories [4, [7] [8] [9] . This method is in contrast to the present study, where POC testing was conducted bedside using the much faster cobas Liat influenza A and B viruses and RSV assay. In addition, the present study compared the effect of POCT on antibiotic prescription and duration of hospitalisation.

The present study showed that clinicians do take the POCT result into account when diagnosing the patient and deciding treatment strategy. Even though hospitalisation time was shortened and antibiotic use was decreased, we found no difference in readmission or mortality between POCT-positive and -negative patients, indicating that the use of a POCT for clinical decisions regarding hospital admission and initiation of antibiotic therapy is safe for the patient. Other studies have reported that a general introduction of syndromic POCT for multiple respiratory pathogens without taking the result of the POCT into account does not alter prescription and duration of antibiotic treatment or duration of hospitalisation [4, [7] [8] [9] 11] . One may speculate that a fast and positive result for other respiratory pathogens will also impact prescription of antibiotics and duration of hospitalisation, as is suggested by our data, as these lesser pathogenic viruses are often treated with antibiotics and patients are admitted even though they are diagnosed with viral or mixed viral and bacterial RTI.

Coinfections with several respiratory pathogens have frequently been found in younger children and have been shown to reduce with increasing age [15, 16] , which is in line with the present study. The use of syndromic POCT should therefore be considered in children below 5 years of age and may also be beneficial outside the appropriate season for targeted POCT for influenza A and B viruses and RSV. Further randomised controlled trials are needed to clarify whether positive syndromic POCT for respiratory viruses can significantly reduce antibiotic prescription and duration of hospitalisation compared to targeted testing for influenza A and B viruses and RSV. Such studies are relevant as 322 patients, or 58.0% of all patients tested by POCT in the present study, were positive for one or more of the 26 tested respiratory pathogens.

The present study has several limitations including that patients were only tested if the treating physician suspected the patient to be positive for influenza viruses or RSV based on clinical evaluation. The prevalence of respiratory viruses is therefore expected to be higher in our sample than in the general population. Samples were collected consecutively, but only from the middle of the RSV and influenza season, which may have influenced patient handling and the detection of other viral and bacterial pathogens. This study compares POCTpositive and -negative samples and cannot be used to evaluate whether patient management was changed by the introduction of POCT compared to centralised laboratory testing. In addition, we can only hypothesise whether syndromic POC testing may result in changed patient management compared with POC testing for influenza A and B viruses and RSV.

It is still unknown how the introduction of POCT will influence influenza and RSV surveillance in Denmark. As results are reported directly into the national microbiology database, it may impact surveillance data if testing frequency and indication for testing changes over time. As the present POC testing for influenza A and B viruses and RSV does not subtype influenza A virus-positive isolates, it may influence national surveillance as most centralised microbiology laboratories report influenza A virus subtypes. Most POCT samples will not be subtyped as only a fraction of samples will be subtyped by SSI in the future. Further studies are therefore needed to establish how POCT for influenza A and B viruses and RSV are changing our national surveillance data.

Comparison of six sample-to-answer influenza A/B and respiratory syncytial virus nucleic acid amplification assays using respiratory specimens from children

Systematic review of the impact of point-of-care testing for influenza on the outcomes of patients with acute respiratory tract infection

Clinical decision making in the emergency department setting using rapid PCR: Results of the CLADE study group

Routine molecular point-of-care testing for respiratory viruses in adults presenting to hospital with acute respiratory illness (ResPOC): a pragmatic, open-label, randomised controlled trial

Evaluation of a molecular point of care testing for viral and atypical pathogens on intravenous antibiotic duration in hospitalized adults with lower respiratory tract infection: A randomized clinical trial

Using a novel rapid viral test to improve triage of emergency department patients with acute respiratory illness during flu season

Multiplex PCR point of care testing versus routine, laboratory-based testing in the treatment of adults with respiratory tract infections: a quasi-randomised study assessing impact on length of stay and antimicrobial use

More targeted use of oseltamivir and in-hospital isolation facilities after implementation of a multifaceted strategy including a rapid molecular diagnostic panel for respiratory viruses in immunocompromised adult patients

Contribution of the FilmArray Respiratory Panel in the management of adult and pediatric patients attending the emergency room during 2015-2016 influenza epidemics: An interventional study

Evaluation of FilmArray respiratory panel multiplex polymerase chain reaction assay for detection of pathogens in adult outpatients with acute respiratory tract infection

Impact of nasopharyngeal FilmArray respiratory panel results on antimicrobial decisions in hospitalized patients

Impact of a multiplex PCR point-of-care test for influenza A/B and respiratory syncytial virus on an acute pediatric hospital ward

Impact of molecular point-of-care testing on clinical management and in-hospital costs of patients suspected of influenza or RSV infection: a modeling study

Anbefalinger vedrørende implementering og anvendelse af Point-of-Care teknologi til diagnostik af infektionssygdomme. [Recommendations regarding the implementation and use of point-of-care technology for diagnosis of infectious diseases

Odense: Dansk Selskab for Klinisk Mikrobiologi (DSKM)

Epidemiologic analysis of respiratory viral infections mainly in hospitalized children and adults in a Midwest university medical center after the implementation of a 14-virus multiplex nucleic acid amplification test

Age-related prevalence of common upper respiratory pathogens, based on the application of the FilmArray Respiratory panel in a tertiary hospital in Greece

License, supplementary material and copyright

Jan Gorm Lisby and Uffe Vest Schneider have both received honorarium for presenting papers at Roche Diagnostics sponsored events / conferences.

Uffe Vest Schneider, Didi Bang and Jan Gorm Lisby conceived the project. Uffe Vest Schneider and Jan Gorm Lisby initiated the collection of the clinical samples. Didi Bang, Randi Føns Petersen, Shila Mortensen and Ramona Trebbien oversaw the testing of samples at Statens Serum Institut. Uffe Vest Schneider, Mona Katrine Alberthe Holm and Jan Gorm Lisby received clearance to and collected the clinical data. Uffe Vest Schneider performed the data analysis and drafted the manuscript with input from all authors. All authors approved the final manuscript.

This is an open-access article distributed under the terms of the Creative Commons Attribution (CC BY 4.0) Licence. You may share and adapt the material, but must give appropriate credit to the source, provide a link to the licence and indicate if changes were made.Any supplementary material referenced in the article can be found in the online version.