key: cord-0698695-82n0d1dh
authors: Li, Zhijie; Liu, Dafei; Ran, Xuhua; Liu, Chunguo; Guo, Dongchun; Hu, Xiaoliang; Tian, Jin; Zhang, Xiaozhan; Shao, Yuhao; Liu, Shengwang; Qu, Liandong
title: Characterization and pathogenicity of a novel mammalian orthoreovirus from wild short-nosed fruit bats
date: 2016-05-31
journal: Infect Genet Evol
DOI: 10.1016/j.meegid.2016.05.039
sha: 8a569c06cd75f733386979cbd3e15c83a8816570
doc_id: 698695
cord_uid: 82n0d1dh

Mammalian orthoreoviruses (MRVs) have a wide range of geographic distribution and have been isolated from humans and various animals. This study describes the isolation, molecular characterization and analysis of pathogenicity of MRV variant B/03 from wild short-nosed fruit bats. Negative stain electron microscopy illustrated that the B/03 strain is a non-enveloped icosahedral virus with a diameter of 70 nm. Sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) migration patterns showed that the B/03 viral genome contains 10 segments in a 3:3:4 arrangement. The isolate belongs to MRV serotype 1 based on S1 gene nucleotide sequence data. BALB/c mice experimentally infected with B/03 virus by intranasal inoculation developed severe respiratory distress with tissue damage and inflammation. Lastly, B/03 virus has an increased transmission risk between bats and humans or animals.

Mammalian orthoreovirus (MRV) belongs to the genus Orthoreovirus, which includes non-enveloped double-stranded RNA viruses, each with a genome comprising 10 genetic segments divided into three size classes (Attoui et al., 2011) . Four major MRV serotypes have been characterized by neutralization assays, and all inhibit hemagglutination: type 1 Lang (T1L), type 2 Jones (T2J), type 3 Dearing (T3D) and type 4 Ndelle (T4N) (Kohl et al., 2012; Attoui et al., 2001a Attoui et al., , 2001b . MRV isolates were obtained from hosts with or without clinical signs of disease, and the virus can infect a broad range of mammals (Dermody et al., 2013) . MRVs are ubiquitous mammalian pathogens, infecting nearly all mammalian hosts, including humans and other animal species (Steyer et al., 2013; Decaro et al., 2005; Attoui et al., 2011) .

Infected bats are associated with an increasing number of emerging and re-emerging viruses, including the Hendra virus (HeV), Nipah virus (NiV), Ebola virus (EBOV) and SARS coronavirus. Infected bats threaten public health because they exist in large populations and travel across wide geographical distances (Wong et al., 2007; Calisher et al., 2006) . However, reports on the detection and isolation of orthoreovirus from bats are limited. In 1968, the first orthoreovirus in bats, Nelson Bay virus (NBV), was isolated from the blood of fruit bats in Australia. In 1999, the second bat-borne orthoreovirus, Pulau virus (PulV), was isolated from fruit bat urine collected on Tioman Island, Malaysia. Since then, bat-borne orthoreoviruses have received much attention. Additional orthoreoviruses (MelV, KamV, Xi-River, Broome viruses, Kampar, Sikamat, HK23629/07, RpMRV-YN2012, Cangyuan virus) have been isolated from or detected in bats and in humans who were likely in contact with bats (Chua et al., 2007; Chua et al., 2008; Du et al., 2010; Thalmann et al., 2010; Cheng et al., 2009; Chua et al., 2011; Wang et al., 2015; Hu et al., 2014) .

Recently, several groups have reported MRV infection in bats that resulted in visible pathology within tissues (Kohl et al., 2012; Lelli et al., 2013) . The authors speculated that bat-to-human interspecies transmission was possible, but no substantial evidence to support this hypothesis was provided. In this study, we report the characterization of a novel MRV strain (called "B/03") isolated from healthy, wild shortnosed fruit bats in Guangdong province, China. The whole genome sequence of strain B/03 was determined. Its evolution and evidence of genetic reassortment were analyzed by sequence comparison using phylogenetic analysis. Furthermore, we evaluated the pathogenicity of B/03 virus using four-week-old female BALB/c mice.

MRV strain MPC/04 was isolated from masked palm civets in Guangdong Province in southern China by our laboratory and caused a Infection, Genetics and Evolution 43 (2016) 

Infection, Genetics and Evolution j o u r n a l h o m e p a g e : w w w . e l s e v i e r . c o m / l o c a t e / m e e g i d potentially fatal infection of the inoculated host mouse . Vero E6 cells were obtained from the ATCC (ATCC® CRL-1586™) and grown at 37°C in 5% CO 2 in DMEM supplemented with 2 mM glutamine, 5% fetal calf serum and antibiotics. Four-week-old female BALB/c mice were obtained from the experimental animal center of Harbin Veterinary Research Institute (HVRI). All animals were housed in the animal facility at HVRI under standard conditions in accordance with institutional guidelines.

Thirty tissue samples from short-nosed fruit bats were collected from Shaoguan city of China's Guangdong province and homogenized. The homogenate was filtered through a 0.22 μm pore-size filter and used to inoculate confluent monolayers of Vero E6 cells. Blind passages were performed until a cytopathic effect (CPE) was observed. The infected cells were plaque purified, and the virus was propagated in Vero E6 cultures. Virus was collected from infected cells by three freeze-thaw cycles. Aliquots were stored at − 80°C. One aliquot was titrated on Vero E6 cells to estimate a titer by plaque assay. If CPE was not observed after 4 passages, the result of virus isolation was considered negative. The infected cells were prepared for negative stain and thin section examination by electron microscopy (EM).

In addition, an indirect immunofluorescence assay (IFA) was used to detect MRV proteins in infected cell cultures. Briefly, after washing with PBS, cells were fixed with 4% paraformaldehyde and incubated with 1% BSA for 1 h. Then, the cells were incubated with a mouse anti-MRV (T3D) antibody, followed by a goat anti-mouse IgG-FITC secondary antibody (SANTA CRUZ, USA). After washing, fluorescence was observed under an AMG EVOS F1 inverted microscope. Normal mouse sera, diluted 1:50, was used as a negative control.

Viral dsRNA was extracted from purified virus particles using TRIZOL Reagent according to the manufacturer's protocol. Double strand RNA (dsRNA) segments were separated by electrophoresis in 8% (w/v) polyacrylamide slab gels. Approximately 30 μl of each sample was loaded into the gels, and electrophoresis was performed at 120 V for 4 h at room temperature.

To further characterize the virus, primers were designed with Primer Premier 5.0 software based on published sequences. All information regarding the primers is provided in Table 1 . RT-PCR was performed using the One Step RT-PCR kit (Qiagen) as described in previous reports . The whole genome of B/03 was amplified and sequenced by the Sanger method; then, the sequence data were assembled using the Seqman program and manually edited. The sequence of B/03 was compared with other published MRV sequences. Phylogenetic analyses were performed using the Neighbor-Joining (NJ) method with the Kimura 2-parameter model in MEGA 5.

A total of 100 four-week-old female BALB/c mice were randomly divided into ten groups of 10. The animals in groups 1-8 were infected by intranasal (i.n.), intracranial (i.c.), intraperitoneal (i.p.) or intragastric (i.g.) inoculation with 10 6 and 10 7 PFU-purified B/03 virus diluted in PBS. Animals in group 9 received 10 7 PFU of MPC/04 (i.n.). Simultaneously, mice were inoculated with PBS (i.n.) as a control. For 30 days, all mice were monitored daily for clinical signs of disease. Tissues were harvested from mice euthanized by CO 2 narcosis for analysis of viral replication and pathology. A histopathological scoring system was used to characterize pathological lesions in detail. Standard histopathological procedures were used to record all observed lesions. Samples were fixed in buffered formalin and embedded in paraffin wax. Sections (4 μm) were stained with hematoxylin and eosin (H-E) for histopathological examination. A scoring system for gross pathology and histopathology was developed, and the severity of lesions ranged from 0 (no lesion) to 3 (severe lesion). Data from both scoring systems were analyzed using the Kruskal-Wallis non-parametric mean comparison test (Elliott and Hynan, 2011) , and differences were considered significant at P b 0.05.

Organs from duplicate animals were collected at each time point, suspended in 9 vol of PBS and disrupted by sonication for 4 min on ice. Titration was performed by virus plaque assay. Infectious titers were calculated per gram of tissue. The data were plotted as the mean values with variation shown as ±1 standard error.

The animal experiments were approved by the Animal Ethics Committee of HVRI of the Chinese Academy of Agricultural Sciences (CAAS) and performed in accordance with animal ethics guidelines and approved protocols. The Animal Ethics Committee approval number was SYXK (Hei) 2011-022. 

After four passages of the isolated virus on Vero E6 cells, a distinct CPE was observed in infected cells, characterized by granulating, shrinking, rounding, seining, and detaching, as determined by IFA using serum from mice immunized with T3D (Fig. 1A) . MRV particles in infected Vero cells were also examined by EM techniques. As shown in Fig. 1B , negative stain EM showed multiple virus-like particles with nonenveloped icosahedral formation in the homogenates. Ultra-thin sections of infected Vero cells showed typical electrondense virus particles organized in a paracrystalline pattern within the cytoplasm. Polyacrylamide gel electrophoresis (PAGE) migration patterns of the genome segments showed that B/03 virus contains 10 segments in a 3:3:4 arrangement, typical of reoviruses (Fig. 1C) .

The complete genome sequence of B/03 virus was generated, and comparative analysis with other MRV strains was performed. The complete sequences of 10 segments were submitted to a GenBank database under accession numbers KX263307-KX263316. The complete genome of B/03 virus is 22,875 bp, and sizes of segments 1 through 10 are as follows: L1, 3804 bp; L2, 3870 bp; L3, 3828 bp; M1, 2211 bp; M2, 2127 bp; M3, 2166 bp; S1, 1413 bp; S2, 1257 bp; S3, 1101 bp; and S4, 1098 bp. The inferred lengths of eight structural proteins and three nonstructural proteins are as follows: λ1 (1275 aa), λ2 (1289 aa), λ3 (1267 aa), μNS (721 aa), μ1 (708 aa), μ2 (736 aa), σ1 (470 aa), σ1s (119 aa), σ2 (418 aa), σNS (366 aa), and σ3 (365 aa). Pairwise nucleotide and inferred amino acid comparison between strain B/03 and other MRV strains were performed for all ten segments (Table 2) . Nucleotide sequence alignments indicated that the L1, M1, M2, M3, and S1 genes from B/03 virus were highly related to those of WIV2-4 virus (98.63, 98.19, 97.04, 98.29, and 98.80%, respectively). The L2, L3 and S4 genes had highest identities (97.54-99.03%) with pig strains 729 and SC-A. The S2 segment of strain B/03 was most similar to strain MPC/04 on both the nucleotide and inferred amino acid level. Segment S3 of strain B/03 was most similar to strains HB-C and HB-A (isolated from minks) on both nucleotide and amino acid levels. The MRV S1 gene encodes the viral attachment protein σ1, which is unique to each MRV prototype strain and determines the serotype. When compared to the S1 sequences available in GenBank, the B/03 strain shares higher identity with that of MRV-1 than with those of MRV-2, MRV-3 or MRV-4 (Fig. 2) . Phylogenetic analysis of the L1, L2, L3, M1, M2, M3, S2, S3 and S4 genome segments for the B/03 strain and most related whole-genome strains available in GenBank is shown in Supplementary 1.

To determine the potential route of infection, BALB/c mice were inoculated in four ways with different doses of purified virus B/03 (10 6 or 10 7 PFU). Mice infected by i.n. inoculation in groups 1 (10 6 PFU B03), 2 (10 7 PFU B03) and 9 (10 7 PFU MPC/04) exhibited clinical signs (noticeable respiratory distress and body weight loss), and the time of death and clinical manifestations of infection varied with dose. The highest dose of B/ 03 virus caused disease and resulted in death in 5 of 10 mice starting at 7 days post-infection (Fig. 3) . The same dose of MPC/04 virus also induced clinical symptoms and death in mice. Mice infected with 10 6 PFU of B03 virus also manifested respiratory crackling and death in 2 of 10 mice starting at 8 days post-infection. In contrast, all of the mice exposed to the same doses by either i.c. i.p. or i.g. inoculation did not exhibit any signs of respiratory distress or changes in body weight during the course of the experiment, and no histological changes were observed in their organs at any time point. The control mice remained healthy throughout the trial. These experiments showed that respiratory infection with B/03 virus induces disease in BALB/c mice.

To assess the gross pathological consequences of infection, the liver, lung, brain, intestine, and spleen were subjected to histopathological examination using standard procedures. All surviving animals were euthanized at 30 dpi for inclusion in this analysis. Samples were paraffinembedded, sectioned and stained with hematoxylin and eosin. Infection of the lung produced signs of inflammation associated with alveolar thickening and lymphocytic infiltration (Fig. 4A) . A composite analysis using the abovementioned histopathological scoring system was performed (Table 3 ). These data indicate that the B/03 strain induces histopathological changes associated with disease. No statistically significant differences were observed in mice inoculated by other routes or in control animals.

To analyze viral replication in different organs of infected mice, viral titers were quantified in tissues 7 days after infection with 10 6 and 10 7 PFU of B/03 virus. Animals inoculated with 10 7 PFU of B/03 virus had higher viral titers (up to 10 7 PFU/g) than those of mice inoculated with 10 6 PFU. Higher levels of viral RNA were detected in the lungs than in the brain, liver, intestine or spleen (Fig. 4B) . However, the inoculated tissue (i.c., i.p. and i.g.) with 10 7 PFU had 3-5 times less virus in each organ compared to those of i.n. inoculated mice (data not shown). No virus was detected in the control animals.

The most recent disease outbreaks have been associated with zoonotic transmission events, and newly emerging viruses have originated from wildlife (Moratelli and Calisher, 2015; O'Shea et al., 2014) . Thus, surveillance and evaluation of viruses prevalent in wildlife are of special interest. Bats are the natural host reservoir for a number of high-impact zoonotic viruses. More than 200 viruses belonging to 27 families were isolated from or detected in bats. A few of these viruses have been responsible for human disease, including Ebola virus (Leroy et al., 2005) , Middle East respiratory syndrome coronavirus (MERS-CoV) (Ithete et al., 2013) , Severe Acute Respiratory Syndrome coronaviruses (SARS-CoV) (Ge et al., 2013) , Nipah and Hendra viruses (Halpin et al., 2000; Marsh et al., 2012) . Several bat orthoreovirus isolates have been obtained from bats in recent years (Moratelli and Calisher, 2015; Chua et al., 2007; Pritchard et al., 2006; Du et al., 2010) . A novel bat reassortant MRV, RpMRV-YN2012, obtained from least horseshoe bats in China resulted from a reassortment of MRVs known to infect humans and animals . Six MRV strains were isolated from Hipposideros and Myotis and grouped into MRV serotypes 1, 2, or 3 based on the S1 gene sequence . Three novel MRVs were isolated from European bats, with rather mild or clinically unapparent infections in their hosts (Kohl et al., 2012) . Considering the diversity and wide distribution of bats and the potential for transmission of bat viruses to humans and other animals, continued surveillance of MRVs in all host species is urgently needed. In this study, one strain of MRV, B/03, was isolated by in vitro cell culture from thirty wild short-nosed fruit bat samples from Shaoguan city of China's Guangdong province. The isolate was serially propagated in cell culture and characterized by cell culture CPE, immunofluorescence staining, Electropherotype, EM and entire genome sequencing.

MRV genomes undergo multiple types of genomic alteration, including intragenic rearrangement and reassortment, in both laboratory and natural conditions (Dermody et al., 2013) . To molecularly characterize B/03 virus, we amplified and sequenced the three large (L1-L3), three medium (M1-M3), and four small (S1-S4) viral genes. Based on sequence comparison and phylogenetic analysis, we conclude that the B/03 isolate is a novel type 1 bat orthoreovirus, and it might have originated from gene segment mixing during infection with more than one MRV strain in nature. The potential function of these genes may be important for understanding pathogenic mechanisms and should be studied further.

MRVs were traditionally believed to be causative agents of mild respiratory and enteric diseases without significant clinical impact (Steyer et al., 2013) . However, several recent studies have suggested that MRV can cause serious illness and even death in humans and other mammals, characterized by upper respiratory tract infection, diarrhea and encephalitis (Tyler et al., 2004; Ouattara et al., 2011) . Indeed, the pathogenesis of reovirus infections has been most extensively studied using both suckling and adult mice, and infections lead to systemic viral replication, morbidity, and mortality (Dermody et al., 2013; Doyle et al., 2015; Organ and Rubin, 1998) . This study aimed to use BALB/c mice to study MRV B/03 pathogenesis. BALB/c mice were infected by intranasal (i.n.), intracranial (i.c.), intraperitoneal (i.p.) or intragastric (i.g.) inoculation with different doses of B/03 virus. We found that mice are susceptible to MRV B/03 infection by intranasal inoculation. The highest dose of B/03 virus (10 7 PFU) induced signs of disease on day 5 after infection and resulted in the death of 5 of 10 mice starting at 7 days post-infection. We observed approximately 50% mortality in mice that underwent i.n. inoculation with 10 7 PFU of B/03 virus. In a previous study, we showed that the MPC/04 strain (isolated from masked palm civets) is pathogenic to four-week-old female BALB/c mice with approximately 70% mortality and pronounced pathological changes in tissues of mice inoculated (i.n.) with 10 7 PFU . In this study, infection with B/03 virus caused obvious lesions in the lungs due to tissue damage and inflammation associated with alveolar thickening and lymphocytic infiltration, as well as accumulation of cellular debris and distended bronchioles and alveoli. Our study shows that the B/03 strain is pathogenic to BALB/c mice. Additional studies regarding viral replication, pathogenesis and host interactions are needed to better understand the pathogenesis of this virus. These findings parallel those found by others in rats (Gauvin et al., 2013; Morin et al., 1996) .

To characterize viral replication, we analyzed viral titers in the lung, brain, liver, intestine and spleen after i.n. infection with B/03 virus. Viral loads in the lung were higher (100-fold) than those in other tissues, and this observation was associated with the ability of the virus to cause acute respiratory distress. These data are consistent with pathological changes in the lung. Mice in the 10 7 PFU inoculation group displayed severe acute respiratory symptoms and died starting at day 7 dpi. Our results indicate that B/03 virus replicates to higher levels in the lung than in other organs, a finding that is in agreement with the induction of acute respiratory distress in infected mice. We also provide evidence that these novel MRV strains are pathogenic to mice, leading to lethal respiratory disease.

Considering B/03 may have resulted from a reassortment of bat, mink, and/or human MRV strains, which can cause severe disease in humans and animals, it is necessary to identify pathogenicity in animal hosts. Our data confirm that mice were infected with B/03 virus via the respiratory route, causing a potentially fatal respiratory infection. Further work is required to understand the full zoonotic potential and pathogenesis of B/03 virus.

Supplementary data to this article can be found online at http://dx. doi.org/10.1016/j.meegid.2016.05.039.

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This work was supported by funds from the National Natural Science Foundation of China (31402204), the State Key Laboratory of Veterinary Biotechnology (SKLVBP201421), and the Basic Scientific Research Operation Cost of State-leveled Public Welfare Scientific Research Courtyard (0302014011).