key: cord-0690932-8dj9caqp authors: Szabó, Gábor Tamás; Mahiny, Azita Josefine; Vlatkovic, Irena title: COVID-19 mRNA vaccines: platforms and current developments date: 2022-02-19 journal: Mol Ther DOI: 10.1016/j.ymthe.2022.02.016 sha: 1a47d27c0b74ae09c650f3b5415fdf1f8e4f6646 doc_id: 690932 cord_uid: 8dj9caqp Since the first successful application of messenger ribonucleic acid (mRNA) as a vaccine agent in a preclinical study nearly 30 years ago, numerous advances have been made in the field of mRNA therapeutic technologies. This research uncovered the unique favorable characteristics of mRNA vaccines, including their ability to give rise to non-toxic, potent immune responses and the potential to design and upscale them rapidly, making them an excellent vaccine candidate during the coronavirus disease 2019 (COVID-19) pandemic. Indeed, the first two vaccines against COVID-19 to receive accelerated regulatory authorization were nucleoside-modified mRNA vaccines, which showed more than 90% protective efficacy against symptomatic severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection alongside tolerable safety profiles in the pivotal phase III clinical trials. Real-world evidence following the deployment of global vaccination campaigns utilizing mRNA vaccines has bolstered clinical trial evidence and further illustrated that this technology can be used safely and effectively to combat COVID-19. This unprecedented success also emphasized the broader potential of this new drug class not only for other infectious diseases, but for other indications such as cancer and inherited diseases. This review presents a brief history and the current status of developments of four mRNA vaccine platforms: nucleoside-modified and unmodified mRNA, circular RNA, and self-amplifying RNA as well as an overview of the recent progress and status of COVID-19 mRNA vaccines. We also discuss the current and anticipated challenges of these technologies which may be important for future research endeavors and clinical applications. Since the first successful application of messenger ribonucleic acid (mRNA) as a vaccine agent 27 in a preclinical study nearly 30 years ago, numerous advances have been made in the field of 28 mRNA therapeutic technologies. This research uncovered the unique favorable characteristics 29 of mRNA vaccines, including their ability to give rise to non-toxic, potent immune responses 30 and the potential to design and upscale them rapidly, making them an excellent vaccine 31 candidate during the coronavirus disease 2019 (COVID-19) pandemic. Indeed, the first 32 two vaccines against COVID-19 to receive accelerated regulatory authorization 33 were nucleoside-modified mRNA vaccines, which showed more than 90% protective efficacy 34 against symptomatic severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection 35 alongside tolerable safety profiles in the pivotal phase III clinical trials. Real-world evidence 36 following the deployment of global vaccination campaigns utilizing mRNA vaccines has 37 bolstered clinical trial evidence and further illustrated that this technology can be used safely 38 and effectively to combat COVID-19. This unprecedented success also emphasized the broader 39 potential of this new drug class not only for other infectious diseases, but for other indications 40 such as cancer and inherited diseases. This review presents a brief history and the current 41 status of developments of four mRNA vaccine platforms: nucleoside-modified and unmodified Introduction 47 Vaccines are important tools to prevent, control, and/or eradicate infectious diseases 48 and are fundamental components of public health programs worldwide. 1 In this review, we summarize the preclinical and clinical data of the vaccine candidates 68 which fall under four mRNA vaccine platforms: non-replicating linear nucleoside-modified and 69 J o u r n a l P r e -p r o o f unmodified mRNA, circular RNA (circRNA), and self-amplifying RNA (saRNA). In addition, we 70 discuss potential challenges which may hinder future vaccine development programs. 71 The path to COVID-19 mRNA vaccine development 72 When compared to traditional vaccines, which are relatively slow and laborious to 73 develop 11,1,12 , mRNA-based vaccines have features which allow them to be rapidly designed 74 and upscaled while still being highly potent and low cost. 6 Although mRNA vaccines were 75 already being investigated in clinical trials for other diseases, e.g., cancer, their far-reaching 76 potential was not realized until the COVID-19 pandemic, where mRNA vaccine candidates 77 were one of the first to enter clinical trials and obtain accelerated regulatory approvals. 13 Another approach to reduce dose levels is the use of an mRNA platform which is able to self- cleaved by the host cell protease furin into subunits (S1 and S2), which support cellular entry. 64 173 Interestingly, the C terminal motif of the cleaved S1 subunit can bind to neuropillin-1 (NRP- however, its potential usage in mRNA-1273 vaccine production is currently not publicly 229 disclosed and can only be speculated. 230 The dosing of nucleoside-modified LNP-mRNAs against COVID-19 applied in clinical 231 trials ranged between 10 µg and 250 µg RNA (Table 1) (Table 270 2). (Table 3) . A guide to vaccinology: From basic principles to new developments Nucleoside-modified mRNA vaccines induce potent T follicular helper and 705 germinal center B cell responses The dawn of mRNA vaccines: The COVID-19 case Self-assembled mRNA vaccines mRNA-based therapeutics--developing a new class of drugs. Nat Rev 711 Drug Discov SARS-CoV-2 mRNA vaccines induce persistent human germinal centre responses SARS-CoV-2 Cell Entry Depends on ACE2 and TMPRSS2 and Is Blocked 717 by a Clinically Proven Protease Inhibitor A serological assay to detect SARS-CoV-2 721 seroconversion in humans Pre-fusion structure of a human coronavirus spike protein Immunogenicity and structures of a rationally designed prefusion MERS-CoV 727 spike antigen Cryo-730 EM structure of the 2019-nCoV spike in the prefusion conformation TMPRSS2 and furin are both essential for proteolytic activation of 734 SARS-CoV-2 in human airway cells Neuropilin-1 is a host factor for SARS-CoV-2 infection Neuropilin-1 is a T cell memory checkpoint limiting 743 long-term antitumor immunity Immunogenicity and efficacy of mRNA COVID-19 vaccine MRT5500 in preclinical 747 animal models Sequence-752 engineered mRNA Without Chemical Nucleoside Modifications Enables an Effective Protein 753 Therapy in Large Animals Moderna Announces First Participant Dosed in NIH-led Phase 1 Study of mRNA Vaccine 758 (mRNA-1273) Against Novel Coronavirus: Announcment of mRNA 1273 in Phase 1 mRNA vaccines for infectious diseases: Principles, 781 delivery and clinical translation Principles for designing an optimal mRNA lipid nanoparticle vaccine Improving mRNA-Based Therapeutic Gene Delivery by 786 Expression-Augmenting 3' UTRs Identified by Cellular Library Screening BNT162b2 vaccine induces neutralizing antibodies and poly-specific T cells in 790 humans COVID-19 vaccine BNT162b1 elicits human antibody and TH1 T cell responses 848 Safety and immunogenicity of SARS-CoV-2 variant mRNA vaccine boosters in healthy adults: An 849 interim analysis Evaluation of mRNA-1273 SARS-CoV-2 Vaccine in Adolescents Effectiveness of the BNT162b2 mRNA COVID-19 vaccine in 855 pregnancy Coronavirus disease 2019 vaccine response in pregnant and lactating women: A 858 cohort study Immunogenicity of COVID-19 mRNA Vaccines in Pregnant and 861 Lactating Women SARS-CoV-863 2-Specific Antibodies in Breast Milk After COVID-19 Vaccination of Breastfeeding Women Innate/Adaptive Immune Response Codon bias and heterologous protein expression Species-specific recognition of single-stranded RNA via toll-like receptor 7 and 8 mRNA vaccine CVnCoV protects non-human primates 880 from SARS-CoV-2 challenge infection CoV-2 vaccine candidate CVnCoV induces high levels of virus-neutralising antibodies and 884 mediates protection in rodents Safety and immunogenicity of an mRNA-lipid nanoparticle vaccine 890 candidate against SARS-CoV-2: A phase 1 randomized clinical trial Efficacy and Safety of the CVnCoV SARS-CoV-2 mRNA Vaccine 893 Candidate: Results from Herald, a Phase 2b/3, Randomised, Observer-Blinded Controlled Clinical Trial in Ten Countries in Europe and Latin America: Herald study preprint data RNA sensors of the innate immune system and 897 their detection of pathogens Type I Interferons Interfere with the Capacity of mRNA 902 Lipoplex Vaccines to Elicit Cytolytic T Cell Responses Type I IFN counteracts the induction of antigen-specific immune 906 responses by lipid-based delivery of mRNA vaccines Nucleoside 909 modifications in RNA limit activation of 2'-5'-oligoadenylate synthetase and increase resistance to 910 cleavage by RNase L Optimization of Non-Coding Regions for a Non-Modified mRNA COVID-19 an enhanced mRNA-based SARS-CoV-2 vaccine candidate, supports 915 higher protein expression and improved immunogenicity in rats CureVac to Shift Focus of COVID-19 Vaccine Development to 918 Second-Generation mRNA Technology: Second generation mRNA technology for COVID 19 919 vaccine A Thermostable mRNA Vaccine against COVID-19 Providence Therapeutics Reports PTX-COVID19-B, its mRNA 934 Vaccine for COVID-19, Neutralizes SARS-CoV-2 and Variants of Concern, Including Delta: Press 935 release Preclinical evaluation of a SARS-CoV-2 mRNA vaccine PTX-COVID19-B mRNA vaccination compared to infection elicits an IgG-predominant 944 response with greater SARS-CoV-2 specificity and similar decrease in variant spike recognition. 945 medRxiv Daichii. Development Progress of mRNA COVID19 Vaccine in Japan: Press Release 960 136. contractpharma. TriLink Extends EyeGene Partnership for COVID-19 Vaccine Development: 961 CleanCap technology to be used in the production of EG-COVID mRNA COVID-19 vaccine for 962 clinical trials 969 138. eTheRNA press release. eTheRNA launches an international consortium and starts 970 development of cross-strain protective CoV-2 mRNA vaccine for high risk populations A COVID-19 mRNA vaccine 974 encoding SARS-CoV-2 virus-like particles induces a strong antiviral-like immune response in mice The biogenesis, 977 biology and characterization of circular RNAs Circular RNA Vaccines against SARS-CoV-2 and Emerging Variants: Qu et al 980 CircRNA COVID-19 vaccine Induction of an IFN-Mediated Antiviral Response by a Self-986 Amplifying RNA Vaccine: Implications for Vaccine Design mRNA as a Transformative Technology for Vaccine 989 Development to Control Infectious Diseases Sensing of RNA viruses: A review of innate immune receptors involved 992 in recognizing RNA virus invasion Self-Amplifying RNA Vaccines Give Equivalent Protection against Influenza to mRNA 995 Vaccines but at Much Lower Doses Structural Components for Amplification of Positive and 998 Negative Strand VEEV Splitzicons A Trans-amplifying RNA Vaccine Strategy for Induction of Potent Protective 1001 Immunity Self-amplifying RNA SARS-CoV-2 lipid nanoparticle vaccine candidate induces high 1004 neutralizing antibody titers in mice Self-amplifying RNA SARS-CoV-2 lipid nanoparticle vaccine induces 1007 equivalent preclinical antibody titers and viral neutralization to recovered COVID-19 patients Safety and Immunogenicity of a Self-Amplifying RNA Vaccine Against 1010 COVID-19: COVAC1, a Phase I, Dose-Ranging Trial: COVAC1 Human Phase I study CoV-2, the Causative Agent of COVID-19 (COVAC-Uganda) Antibody Immune Response to the SARS-CoV-2 Omicron Variant from ARCT-154 and ARCT-165 Elixirgen Therapeutics Concludes pre-IND Meeting with FDA for its Vaccine Candidate EXG-5003: Press Release An Alphavirus-derived replicon RNA vaccine induces SARS-1026 156. businesswire. HDT Bio Corp and Gennova Complete Phase 1 Trial of COVID-19 RNA Vaccine Complete-Phase-1-Trial-of-COVID-19-RNA-Vaccine-in-India Heterologous vaccination regimens with self-amplifying 1034 RNA and adenoviral COVID vaccines induce robust immune responses in mice A self-amplifying mRNA COVID-19 vaccine drives potent and broad 1038 immune responses at low doses that protects non-human primates against SARS-CoV-2 Gritstone Announces Positive Clinical Results from First Cohort of a Phase 1 Study 1040 (CORAL-BOOST) Evaluating a T Cell-Enhanced Self-Amplifying mRNA (samRNA) Vaccine Against 1041 COVID-19: Press release Januar 4 SARS-CoV-2 vaccines in development 1055 164. Moderna. MODERNA ANNOUNCES FIRST PARTICIPANT DOSED IN PHASE 2 STUDY OF 1056 OMICRON-SPECIFIC BOOSTER CANDIDATE: Omicron booster Study Phase II Dolgin E. How COVID unlocked the power of RNA vaccines mRNA 1068 therapeutics in cancer immunotherapy The challenge and 1071 prospect of mRNA therapeutics landscape CDC research. Effectiveness of mRNA BNT162b2 Vaccine 6 Months after Vaccination among 1076 Patients in Large Health Maintenance Organization Considerable escape of SARS-CoV-2 Omicron to antibody 1080 neutralization Association of a Third Dose of BNT162b2 Vaccine With Incidence of SARS-CoV-2 1083 Infection Among Health Care Workers in Israel A noninflammatory mRNA vaccine for treatment of experimental 1086 autoimmune encephalomyelitis Personalized vaccines for cancer immunotherapy Immunological 1092 considerations for COVID-19 vaccine strategies Safe and effective aerosolization of in vitro transcribed mRNA to the 1096 respiratory tract epithelium of horses without a transfection agent Effective mRNA pulmonary delivery 1099 by dry powder formulation of PEGylated synthetic KL4 peptide Oral mRNA delivery using capsule-mediated gastrointestinal tissue injections The evaluation of novel oral vaccines based on self-1105 amplifying RNA lipid nanparticles (saRNA LNPs), saRNA transfected Lactobacillus plantarum LNPs, 1106 and saRNA transfected Lactobacillus plantarum to neutralize SARS-CoV-2 variants alpha and 1107 delta MCMV-based vaccine vectors expressing full-length viral proteins provide 1110 long-term humoral immune protection upon a single-shot vaccination Moderna Website. Moderna's mission is to deliver on the promise of mRNA science to create 1122 a new generation of transformative medicines for patients A Phase 3, Randomized, Stratified, Observer-Blind, Placebo-Controlled Study to 1131 Evaluate the Efficacy, Safety, and Immunogenicity of mRNA-1273 SARS-CoV-2 Vaccine in Adults 1132 Aged 18 Years and Older: ModernaTX, Inc. Protocol mRNA-1273-P301 1154 phase-2b-3-trial-of-first-generation-covid-19-vaccine-candidate-cvncov-demonstrates-protection-1155 in-age-group-of-18-to-60/. Updated Junius 30 1159 1160 degraded by proteasomes (pink circles) and presented on MHC class I (pink circles) leading to specific CD8 + 1173 cytotoxic T-cell response against SARS-CoV-2. Antigens can also be anchored to the membrane of the APC and 1174 directly recognized by BCRs leading to B cell responses; however, such a path and its contribution to antibody 1175 production is currently under debate. Finally, the antigen protein can be exported from the cell and endocytosed 1176 back to the same or another APC, degraded by endosomal proteases, and presented on MHC II structures 1177 resulting in CD4 + helper T-cell response. Immunization progresses with CD4 + helper T cells further helping in 1) 1178 activation of B cells that produce SARS-CoV-2 neutralizing antibodies and 2) activate CD8 + cytotoxic T cells that 1179 may specifically recognize and eliminate virus BCR: B-cell receptor; circRNA: circular ribonucleic acid; IRES: 1181 internal ribosome entry site; IVT: in vitro translation; LNP: lipid nanoparticle; MHC: major histocompatibility 1182 complex; mRNA: messenger ribonucleic acid; saRNA: self-amplifying ribonucleic acid; SARS-CoV-2: severe acute 1183 respiratory syndrome coronavirus 2; S protein: spike protein; TCR: T-cell receptor Figure 2. Widely used mRNA-based COVID-19 vaccines: Comparison of ingredients BioNTech/Pfizer) and mRNA-1273 (Moderna) are composed from 1-methylpseudouridine modified 1188 full-length spike with proline substitutions mRNA that is GC-rich, codon optimized and composed from standard 1189 mRNA components: cap, 5'UTR, coding sequence, 3'UTR, and a polyA tail. BNT162b2 is co-transcriptionally 1190 capped with ((m2 7,3′-O )Gppp(m 2′-O )ApG) cap1, has human α-globin 5'-UTR, AES and mtRNR1 3′-UTR motifs, two 1191 stop codons and polyA tail consisting of A30LA70. 84,82 mRNA-1273 is enzymatically capped, has undisclosed 5'UTR 1192 and on human β-globin gene-based 3'UTR, three stop codons and undisclosed length of the polyA tail Lipids are integrated into LNPs under specific molar ratios. 81,79,190,191 In 1197 addition to the mRNA and LNP component, the only ingredients are salts (PBS and Tris buffers for BNT162b2 and 1198 mRNA-1273, respectively) and 10% sucrose that is used as a cryoprotectant for both mRNA-vaccines AES: Amino-terminal enhancer of split; mtRNR1: mitochondrially encoded 12S rRNA SM-102: 9-Heptadecanyl 8-{ Figure 3: Manufacturing and scale-up of nucleoside-modified mRNA-vaccines The first step in nucleoside-modified mRNA vaccine production consists of an IVT reaction. This reaction, which 1208 is conducted under specific conditions, is based on mixing linearized plasmid template, phage RNA polymerase, 1209 nucleoside-triphosphates (including 1-methylpseudouridine (m1Ψ)) and Cap1 structure