key: cord-0689642-75zkskrr
authors: Dmitriev, S. E.; Vladimirov, D. O.; Lashkevich, K. A.
title: A Quick Guide to Small-Molecule Inhibitors of Eukaryotic Protein Synthesis
date: 2020-11-26
journal: Biochemistry (Mosc)
DOI: 10.1134/s0006297920110097
sha: 5ab13f5334b6c49cc6bb953f2ffc554c0b7eed48
doc_id: 689642
cord_uid: 75zkskrr

Eukaryotic ribosome and cap-dependent translation are attractive targets in the antitumor, antiviral, anti-inflammatory, and antiparasitic therapies. Currently, a broad array of small-molecule drugs is known that specifically inhibit protein synthesis in eukaryotic cells. Many of them are well-studied ribosome-targeting antibiotics that block translocation, the peptidyl transferase center or the polypeptide exit tunnel, modulate the binding of translation machinery components to the ribosome, and induce miscoding, premature termination or stop codon readthrough. Such inhibitors are widely used as anticancer, anthelmintic and antifungal agents in medicine, as well as fungicides in agriculture. Chemicals that affect the accuracy of stop codon recognition are promising drugs for the nonsense suppression therapy of hereditary diseases and restoration of tumor suppressor function in cancer cells. Other compounds inhibit aminoacyl-tRNA synthetases, translation factors, and components of translation-associated signaling pathways, including mTOR kinase. Some of them have antidepressant, immunosuppressive and geroprotective properties. Translation inhibitors are also used in research for gene expression analysis by ribosome profiling, as well as in cell culture techniques. In this article, we review well-studied and less known inhibitors of eukaryotic protein synthesis (with the exception of mitochondrial and plastid translation) classified by their targets and briefly describe the action mechanisms of these compounds. We also present a continuously updated database (http://eupsic.belozersky.msu.ru/) that currently contains information on 370 inhibitors of eukaryotic protein synthesis.

Eukaryotic translation machinery has several specif ic features, both in the structure of its components and mechanisms of translation cycle [1 3] . Despite conserva tion of the functional core, eukaryotic ribosome signifi cantly differs from the bacterial one in structural details, having much in common with the archaeal ribosome. It also contains a number of eukaryote specific elements, including additional rRNA segments, proteins, and pro tein regions [2, 3] . In the course of evolution, eukaryotes have developed unique features of translation initiation, termination, and ribosome recycling [1, 4 6] . The most prominent one is the cap dependent ribosomal scanning, which occurs during translation initiation and involves loading of the 40S ribosomal subunit near the 5′ end of mRNA (that usually contains the m 7 G cap) and its direc tional movement towards the 3′ end until the start codon [1, 5] .

The presence of both conserved and specific features explains the fact that compounds suppressing protein biosynthesis in eukaryotic cells include both universal ribosome targeting antibiotics (active in organisms from all kingdoms of life) and eukaryote specific inhibitors of ribosomes or other components of the translational appa ratus. These compounds interact with different function al sites: the peptidyl transferase center (PTC), the E site, the polypeptide exit tunnel (PET), or the GTPase acti vating center (GAC) of the 60S ribosomal subunit; the decoding center (DC) or other sites of the 40S subunit; BIOCHEMISTRY (Moscow) Vol. 85 No. 11 2020 the binding sites of translation factors or translation related proteins themselves, etc. [7 9 ].

Beside acting on specific targets and having different mechanisms of action, translation inhibitors may also dif fer in their effect on polysomes, which can be easily observed in direct experiments. Compounds that block ini tiation, but not elongation, usually disassemble polysomes. Elongation inhibitors can either disassemble or stabilize polysomes, depending on whether they are able to act on internal ribosomes in the polysome or only on the de novo initiating ribosomes (see below). The latter statement is not obvious and often causes confusion, so some com Eukaryotic translation cycle, selected regulatory pathways, and the most commonly used and well characterized inhibitors of protein synthe sis. The inhibitors are grouped according to the translation cycle stages, in which their targets are involved. Translation initiation: i.1, Met tRNA i binding to eIF2 and formation of the eIF2/Met tRNA i /GTP ternary complex (TC); i.2, eIF4A binging to eIF4G; i.3, eIF4E binging to eIF4G; i.4, eIF4E binging to the m 7 G capped mRNA 5′ end; i.5, eIF4A helicase activity during eIF4F binding to the mRNA and subse quent ribosome scanning; i.6, AUG codon recognition during scanning; i.7, eIF5B interaction with the 60S subunit; i.8, eIF6 interaction with the 60S subunit; i.9, 60S subunit recruitment to the 48S preinitiation complex (48S PIC) and formation of the 80S initiation complex (80S IC). Elongation and accompanying reactions: e.1, tRNA aminoacylation; e.2, eEF1A/GDP dissociation after delivery of aminoacyl tRNA (Aa tRNA); e.3, polypeptide progression in the ribosomal tunnel; e.4, tRNA accommodation/decoding; e.5, peptidyl transferase reaction (com bined with the preceding stages of Aa tRNA binding and accommodation); e.6, translocation; e.7, eEF2/GDP dissociation after transloca tion. Termination: t. 1 pounds acting at the elongation stage (for example, har ringtonine and lactimidomycin) are sometimes called ini tiation inhibitors in the literature. Termination inhibitors can increase the number of ribosomes in a polysome; how ever, compounds that cause the stop codon readthrough usually do not modify the polysome profile. The same is true for the compounds causing miscoding; they decrease the fidelity of protein synthesis, but generally do not affect the polysomes. Premature termination inducers (e.g., puromycin) disassembles polysomes. This issue is compli cated by the fact that some inhibitors exhibit the concen tration dependent effects or trigger the ribotoxic or other types of stress in living cells, which might change the pat tern of cell response to the inhibitor over time.

Here, we compiled a panel of small molecule inhibitors of eukaryotic translation and listed them in the tables with minimalistic comments. The most studied inhibitors are described in detail in the text of the article (see also figure) . The additional information can be found in a constantly updated database (http://eupsic.belozersky.msu.ru) at the Belozersky Institute of Physico Chemical Biology, Moscow State University. Due to the limited space, we did not discuss inhibitors of mitochondrial and plastid translation, since ribosomes of these organelles belong to the bacterial type. We also omitted protein and peptide inhibitors of translation (such as ricin or diphtheria toxin) despite their importance and widespread usage.

There are several types of ribosome inhibitors com mon to all kingdoms of life. Most of them target con served stages of the elongation cycle, such as ligand bind ing, transpeptidation, and translocation, and will be dis cussed in the first section of our review (Table 1) . Inhibitors active toward all ribosome types will be here after called universal inhibitors. Otherwise, we will use the terms "eukaryote specific" or "archaea and eukary ote (AE) specific". The specificity is usually determined by subtle differences in the structure of the binding site. Structural studies have shown that substitution of a single nucleotide in rRNA or a difference in one amino acid residue in a ribosomal protein might be sufficient to change ribosome configuration enough to preclude the binding of the inhibitor. Many of the inhibitors had been identified back in the 1960 70s due to the efforts of sever al groups of scientists, among which D. Vázquez, A. Jiménez, and S. Pestka should be specially recognized. In our review, we describe the results of studies conduct ed since the late 1960s, while earlier findings and the his tory of inhibitors that had been discovered more than half a century ago can be found in the classic reviews of the above mentioned authors [10 13] .

Ribosome targeting elongation inhibitors. The over whelming majority of currently known ribosome target ing inhibitors act at the polypeptide elongation stage. These compounds include inhibitors of peptidyl trans ferase reaction and translocation, peptide tunnel block ers, inducers of decoding errors (miscoding) and prema ture termination, as well as some other types of inhibitors with unique mechanisms of action.

Inhibitors of peptidyl transferase center. Due to its conservation, the PTC of the large ribosomal subunit is the most vulnerable spot of the "protein synthesizing machine". In both pro and eukaryotes, the largest num ber of inhibitors, although belonging to different chemi cal classes and interfering with the ribosome function in different ways, binds at this site (figure, e.5).

Some of these inhibitors interfere with the aminoa cyl tRNA entry or accommodation in the A site. They include, for example, the classic AE specific inhibitor anisomycin, which interacts with the A site and destabi lizes aminoacyl tRNA binding [14 17 ]. The same site is targeted by the eukaryote specific trichothecene myco toxins (T 2 toxin, deoxynivalenol, verrucarin A, and more than three dozen similar compounds with a com plex four membered heterocycle produced by parasitic fungi [14, 17 19] ). The tetraheterocyclic plant alkaloids narciclasine, lycorine, haemanthamine [14, 20] and, pre sumably, their numerous derivatives, such as isonarcicla sine, pseudolycorine, pretazettine [21, 22] , also bind at the A site. The same is true for harringtonine [23] , an inhibitor widely used in ribosome profiling technique [24] , and related homoharringtonine [14, 23, 25, 26] . Homoharringtonine in a form of a semisynthetic drug (omacetaxine mepesuccinate) is among few translation inhibitors approved by both the European Medicines Agency (EMA) and the American Food and Drug Administration (FDA) for the treatment of chronic myeloid leukemia [27] . It has also been considered as a promising drug for the antiviral therapy of COVID 19 [28] .

An interesting property of harringtonine and homo harringtonine is that they bind only to vacant 60S/80S particles or ribosome that have just assembled from the subunits and started elongation, so the inhibitors stop elongation immediately (or soon) after the start [23] . At the same time, previously initiated ribosomes continue translation, which results in only one 80S particle remaining on the mRNA at the beginning of the coding region [25, 29] . This makes harringtonine a useful tool for mapping start codons on a genome wide scale [24] .

It should be noted that the inability to bind to active ly translating polysomes is not uncommon among elonga tion inhibitors. When added to the cells, these com pounds cause the disassembly of polysomes rather than their stabilization; therefore, they are sometimes erro neously referred to as initiation inhibitors [25, 29] . Some of the above mentioned trichothecene mycotoxins pro duce a similar effect on polysomes as harringtonine. Thus, T 2 toxin, verrucarin A, nivalenol, and calonectrin Table 3 ) [19, 30, 31] . The differ ence in the action was explained by the particular side radicals in the certain positions of the scaffold [19, 30, 32] . In the case of some mycotoxins, the effect may also depend on the drug concentration. For example, diace toxyscirpenol and fusarenone X, which normally disas semble polysomes, stabilize them when used at a 100 times higher concentration [30, 33] . The ability to bind to the ribosomes with the vacant A site only and to disas semble polysomes is also typical for some translocation inhibitors, e.g., lactimidomycin [34] (the only case when a mechanism of this phenomenon has been explored, see the text below for the proposed explanation). The A site of the PTC is also targeted by other chemicals, whose structure is principally different from the structure of the above inhibitors. They are natural compounds nagilactone C [14, 35] and agelastatin A [36] , as well as bruceantin (a member of a wide class of quassi noids, which includes many potential anticancer drugs) [26, 37, 38] . Nagilactone E, which has been recently studied using the systems biology approach, also inhibits elongation, likely by the same mechanism [39] . The accommodation of aminoacyl tRNA in the A site is impeded by the universal antibiotic A201A, which has a nucleoside like region resembling the CCA end of tRNA [13, 40] .

Some compounds bind to the P site of the PTC. Among those are two universal inhibitors of the peptidyl transferase reaction -bactobolin A (isocoumarin deriva tive) [41, 42] and blasticidin S (nucleoside antibiotic) [14, 17, 43, 44] . Interestingly, in bacteria, blasticidin S prima rily inhibits translation termination rather than elonga tion [45] , but in eukaryotes, its effect on termination is negligible [46] . A number of insufficiently studied blasti cidin like nucleoside antibiotics, such as anthelmycin (hikizimycin), gougerotin, amicetin, bamicetin, and oth ers [47 49] , also weaken aminoacyl tRNA binding and prevent transpeptidation [43] .

Another nucleoside analog interacting with the PTC and affecting ligand binding and accommodation is spar somycin [17, 18] . The structure of its complex with the eukaryotic ribosome is not yet available, but its interac tion with the large ribosomal subunit of archaea has been studied [44] . Based on these structural data, it was sug gested that sparsomycin forms multiple contacts with the CCA end of tRNA in the P site, while simultaneously preventing the binding of aminoacyl tRNA to the A site.

It should be noted that because of the lack of struc tural and functional data, it is often impossible to unam biguously determine whether the mechanism of action of a particular PTC inhibitor is associated with impaired binding or accommodation of ligands or with conforma tional rearrangements of the PTC itself (resulting in inef fective catalysis). Therefore, it is uncommon to classify PTC inhibitors further based on a particular stage they block. The situation is further complicated by the recent ly discovered amino acid specificity of PTC inhibitors. For example, structural data suggest that harringtonine and its derivatives, as well as trichothecene mycotoxins, interfere with the aminoacyl tRNA entry or at least with the aminoacyl residue accommodation in the A site [14, 26] . However, the data of the toeprinting assay and ribosome profiling suggest [50 52 ] that these compounds allow a few elongation cycles to be successfully performed before the ribosome stops at a certain position, which is determined by the amino acid residue at the C terminus of the peptidyl moiety of the P site ligand. It remains unclear how the ribosome can synthesize a polypeptide fragment several amino acids long, while its PTC is occu pied by a large antibiotic molecule, and why some amino acids can be incorporated successfully, yet the synthesis is blocked on others. The amino acid specificity of PTC inhibitors was first documented in 2013 for harringtonine [50] ; it has been shown by the toeprinting technique that this drug arrests the translating ribosome only when the last amino acid attached to the P site tRNA is lysine, arginine, or tyrosine. Later, the tolerance to the incorpo ration of certain amino acids into the growing peptide and sensitivity to the others was revealed for many classic PTC inhibitors, including anisomycin, sparsomycin, blas ticidin S, and a number of trichothecene mycotoxins [51] . The same phenomenon was observed for some antibiotics blocking the PTC of the bacterial ribosome [53] . However, in the latter case, the specificity was deter mined by the amino acid residue preceding the one locat ed in the P site: translation was stopped mainly by ala nine (and to a lesser extent, by serine and threonine) in position 1 of the peptidyl tRNA. This phenomenon changes our understanding of the action mechanism of PTC inhibitors and requires further investigation [54] .

Inhibitors blocking the polypeptide exit tunnel. The selectivity for the sequence of the nascent peptide is espe cially pronounced in the case of inhibitors that bind in the ribosome PET. Such drugs are common among the com pounds targeting bacterial ribosomes (macrolide antibi otics being a classic example) [55, 56]. Interestingly, macrolides not only hinder progression of the nascent peptide, but also inhibit the PTC. When bound in the ribosomal tunnel, macrolides allosterically affect other regions of the ribosome, in particular, induce conforma tional rearrangements in the PTC [57]. Some anti bacte rial macrolides can bind to the large subunit of the archaeal ribosome (approximately to the same site as in the bacterial one [58 60]); however, none of them is cur rently known to interact in the same way with the eukary otic ribosome [56]. Thus, 13 deoxytedanolide, a non canonical macrolide targeting eukaryotic 60S subunit [61], binds at a completely different site (see below).

However, small molecule drugs blocking or altering the peptide tunnel of the eukaryotic ribosome have recently been found among other classes of chemical compounds (figure, e.3). Two recently discovered inhibitors should be mentioned: PF 06446846 and PF 06378503. These unusual drugs exhibit an unprecedent edly high selectivity toward the peptide sequence, so they only block the synthesis of a few proteins of the entire human proteome [62, 63]. A structural study revealed that PF 06446846 binds within the PET [64] and induces ribosome stalling in the intermediate state of transloca tion due to the altered path of the nascent peptide. Even more recently, another type of eukaryotic translation inhibitors blocking the peptide tunnel was discoveredaromatic polyketides. The binding of tetracenomycin X to the PET in the human ribosome was shown by structural methods and its activity was confirmed by experiments with reporter mRNAs both in vitro and in cultured cells [65] . Interactions of tetracyclines Col 3 and doxycycline with the tunnel were studied biochemically [66] . The activity of some other tetracyclines, e.g., tigecycline [67, 68] and minocycline [69, 70] , in eukaryotic systems has also been reported, although their binding sites remain unknown. Minocycline can be used for the treat ment of autoimmune disorders, neuropathies, and viral infections and has a geroprotective potential. At the same time, the classic antibiotic tetracycline (Tet), which is widely used in medicine as an antibacterial drug, does not block translation in the eukaryotic system and binds to the bacterial ribosome at a completely different site than tetracenomycin X, doxycycline, and Col 3 [7] .

Translocation inhibitors. Compounds blocking the ribosome at the translocation stage represent a significant portion of eukaryotic ribosome inhibitors (figure, e.6) and utilize various mechanisms of action. The classic eukary ote specific inhibitor cycloheximide (also known as actidione or naramycin A) occupies the E site of the 60S subunit and prevents translocation of deacylated tRNA from the P site [14, 17, 25, 71 75] , although alternative mechanisms of its action have also been proposed [34, 76] . Cycloheximide is widely used for the protein half life assay, stabilization of elongation complexes for the polysome profile analysis, and high throughput analysis of gene expression by ribosome profiling and translating ribosome affinity purification (TRAP) approaches [77] . It belongs to a group of chemicals called glutarimides, which also includes a number of less stud ied translation inhibitors (e.g., streptimidone, actiphenol, acetoxycycloheximide, streptovitacin, isomigrastatin, and others [78 80] ). Another glutarimide is lactimidomycin [34, 81] , which binds to the same place in the E site as cycloheximide, but has an additional lactone ring that hinders accommodation of its entire molecule [14] . Unlike cycloheximide, lactimidomycin cannot bind to the actively translating ribosomes, so its addition to the cells leads to the polysome disassembly [34] . This feature of lactimidomycin is exploited in the ribosome profiling assay to map initiation codons [82] (similarly to the pre viously described harringtonine). The inability of lactim idomycin to displace tRNA from the E site is related to the slow accommodation of its large side radical [14] . The explanation can probably be applied to all the above cases when elongation inhibitors are inactive toward the ribo somes that have already been engaged in translation in a polysome but successfully interact with tRNA free ribo somal complexes.

Lissoclimides (in particular, chlorolissoclimide and C45) isolated from sea molluscs bind to almost the same site on the 60S subunit as glutarimide antibiotics. There is also a small degree of structural similarity, so these two classes of antibiotics might have a similar mechanism of action [ 83 85] . The same site is also targeted by another translation inhibitor with a completely different chemical structure, phyllanthoside [14] . The exact mechanism of its action remains unclear [35] , but most likely, phyllan thoside inhibits translocation. The unique property of this drug is presumably formation of a covalent bond with the E site resulting in its irreversible damage.

It is possible that some polyketides also bind at the same site, e.g., pederins (pederin, theopederins, psym berin, onnamide A, mycalamides, etc.) produced by sym bionts of poisonous beetles and marine invertebrates [17, 86, 87] , although reliable structural data have been obtained only for one of them, mycalamide A [60]. All these compounds inhibit translocation [17, 87, 88] . Two polyketides of another group, macrolides tedanolide and 13 deoxytedanolide, also block translocation by binding to the same location in the E site as pederins [61, 89] . Surprisingly, structurally similar myriaporones [90] sup press elongation by phosphorylation of the elongation factor eEF2, rather than by direct binding to the ribo some [91, 92] .

Eukaryote specific inhibitors emetine and related cryptopleurine, as well as the universal antibiotics ami coumacin A and pactamycin, interact with the tRNA binding region in the E site, only on the small ribosomal subunit in this case [14, 93 97] . The elucidation of their action mechanism is complicated by the lack of structur al data on their complexes with the eukaryotic ribosome in the presence of ligands. The ability of emetine and cryptopleurine to inhibit translocation has been known since the 1970s [17, 25, 98] . Chemically related cephae line, tylophorine, tylocrebrine, tubulosin, DCB 3503, and YXM 110 also inhibit translocation and presumably bind to the same region of the 40S subunit [95 97, 99 101] . Emetine has been used in medicine for more than a century as an anthelmintic and antiprotozoal (in particu lar, antiamoebic and antimalarial) medication; recently it was added to the list of potential drugs for combating coronavirus infection caused by SARS CoV 2 [28] .

Amicoumacin A, which affects the same stage of the ribosomal cycle, is considered as a promising anticancer drug [93] . In bacteria, it interacts simultaneously with mRNA and rRNA [102] , preventing ribosome movement during the translocation. Since in eukaryotes the tran script is pulled through the ribosome not only during elongation, but also during scanning of the 5′ untranslat ed region, one would expect amicoumacin A to inhibit the translation initiation. However, functional tests showed that this is not the case: amicoumacin A is a typ ical elongation inhibitor in eukaryotes as well [93] . Pactamycin interacts with the same region on the eukary otic ribosome, but its mechanism of action is poorly understood [14, 18, 25] . For a long time, there had been unclear if this drug affects translation initiation or trans lation elongation (see discussion in [7, 103] ). Finally, it was shown that pactamycin inhibits translocation of the bacterial ribosome [104] , and our data suggest that it acts via a similar mechanism in eukaryotes [51] . Note that edeine, which is another antibiotic that binds to approxi mately the same region of the small subunit [14] , indeed inhibits initiation (see the corresponding section).

The atypical aminoglycoside hygromycin B blocks translocation by another mechanism. There are no struc tural data on its interaction with the eukaryotic ribosome. In bacteria, hygromycin B binds to the decoding center (DC) of the small ribosomal subunit, within the helix h44, and induces conformational changes that prevent the movement of mRNA and tRNA from the A site to the P site [103, 105] . In eukaryotes, its action mechanism is most likely the same [73, 106] . Other aminoglycosides have a different mechanism of action despite binding to the same site (see the text below); however, at high con centrations, some of them also block translocation. It has been well documented for bacterial ribosomes [107, 108] and can be associated with the anchoring of tRNA in the A site upon antibiotic interaction with the classic amino glycoside binding site in the helix h44 or its binding to alternative locations -the large subunit helix H69 or other sites [109, 110] . In a eukaryotic system, this translo cation block can be detected by the toeprinting assay only at very high concentrations of paromomycin and G418 [51] .

In this section, we did not mention the drugs (for example, sordarin) that block translocation by suppress ing the activity of the elongation factor eEF2. As these inhibitors do not affect the ribosome function directly, they will be discussed in a separate section.

Drugs inducing decoding errors. A separate class of inhibitors reduces translation fidelity by causing errors in the incorporation of amino acids by the ribosome (fig ure, e.4). A classic example of this type is the broad spec trum aminoglycoside antibiotics [111] . Their main bind ing site on the eukaryotic ribosome is the helix h44 in the DC of the small subunit [14, 110] . The binding stabilizes the DC conformation that is normally adopted only in the presence of the cognate aminoacyl tRNA in the A site [7] . This makes transpeptidation possible even when the A site ligand does match the codon, resulting in the incorporation of a wrong amino acid. Aminoglycosides also induce stop codon readthrough, which makes them promising agents in the therapy of diseases caused by nonsense mutations (see below).

The highest activity against eukaryotic ribosomes is demonstrated by aminoglycosides with the 4,6 or 4,5 disubstituted 2 deoxystreptamine (2 DOS) ring, such as geneticin (G418, widely used for genetic selection in eukaryotic cell cultures) and less active paromomycin, lividomycins, gentamicins, and amikacin [112 117] . Less toxic analogues of G418 and paromomycin (NB50, NB54, NB74, NB84, NB124, NB156, NB157 and oth ers) are also highly active (for details, see [118, 119] ), as well as the new promising compound TC007 [110, 120] . The similarities in the chemical structure of aminoglyco sides sometimes lead to confusion (as it happened with gentamicin B1 [121] ). However, most other known BIOCHEMISTRY (Moscow) Vol. 85 No. 11 2020 antibiotics of this type are presumably bacteriospecific due to the structural features of the helix h44 in the eukaryotic DC [14, 110, 122, 123] . However, this does not make them safe for eukaryotic cells, as they can sup press mitochondrial protein synthesis and cause severe side effects (primarily nephro and ototoxicity), which limits their use as antibacterial drugs [124, 125] . As men tioned above, some aminoglycosides also inhibit translo cation at elevated concentrations.

Other mechanisms of elongation failure. The universal inhibitor puromycin has a unique mechanism of action: it is a molecular mimetic of the aminoacylated CCA end of tRNA. After entering the A site, it causes a premature, factor free termination of polypeptide synthesis [7, 11] . The activity of puromycin is well studied; its fluorescent and biotin derivatives are widely used for the visualization and quantitative analysis of newly synthesized proteins by many modern techniques such as PUNCH P, SUnSET, Puro PLA, RiboLace, and RPM, as well as for mRNA display [126] . Treating the cells with puromycin in a com bination with cycloheximide leads to the accumulation of ribosomes exclusively on start codons, which facilitates their identification by ribosome profiling [127] . On the other hand, the combined effect of puromycin and other antibiotics depends on the ratio and concentrations of these compounds and cannot always be predicted, which may lead to artifacts [128, 129] . The activity of puromycin is unique; for example, structurally similar antibiotic A201A (see above) does not act as a peptide bond accep tor and only inhibits the peptidyl transferase reac tion [13, 40] .

Among the bacterial translation inhibitors, there is a group of antibiotics that interact with the GAC of the large ribosomal subunit -the binding site for translation al GTPases -and disrupt the functioning of these pro teins. This group includes orthosomycins and thiopep tides (evernimicin, thiostrepton, micrococcin and others) that impede accommodation of translation factors on the ribosome [7] . In eukaryotes, the only currently known inhibitor of this type is the antimalarial drug mefloquine (figure, e.2). It binds to the ribosomal protein uL13 and the ES13 region of the 28S rRNA in the vicinity of the GAC [130] . Although its binding site is somewhat differ ent from that of orthosomycins and thiopeptides, meflo quine most likely acts in a similar manner.

GAC is also targeted by plant, fungal and bacterial toxins called ribosome inactivating proteins and ribotox ins, which cause depurination or cleavage of 28S rRNA at a specific position in the sarcin ricin loop [131, 132] . However, since these are high molecular weight inhibitors, their description is beyond the scope of this review. Besides, the binding of translational GTPases to the GAC is affected by the compounds directly interacting with these factors (described in one of the next sections).

Ribosome targeting initiation inhibitors. The univer sal inhibitor edeine has an unusual mechanism of action (figure, i.6) [18] . It binds to the 40S subunit in the E site [14] ; however, unlike the above described pactamycin, emetine, and other translocation inhibitors, it interferes with the recognition of the start codon during scanning (see discussion in [133, 134] ). Most likely, edeine inter feres with the binding or accommodation of the initiator Met tRNA i in the P site, as has been shown for bacteria [7] . It is believed that at adequate concentrations, it does not interfere with the elongation and therefore can be used to analyze the mechanism of translation initiation, although this is sometimes questioned (see review in [135] ). The use of edeine in the studies of translation ini tiation is complicated by the fact that mammalian cells are usually impermeable to this drug (at least to its most common form, edeine A1) [136] .

2 (4 Methyl 1,6 dinitroanilino) N methylpropi onamide (MDMP) affects the final stage of translation initiation, 60S subunit joining (figure, i.9), without inter fering with other stages of the translation cycle [137 140] . It presumably targets the ribosome directly [141] , but the details of its binding and the mechanism of action are still a mystery. It is also possible that mefloquine (elongation inhibitor discussed in the previous section) may also act at the stage of subunit joining, as it binds to the ribosome in the region shared by the elongation factors and eIF5B, the initiation factor promoting this stage ( figure, i.7) . The same stage of translation initiation in bacteria is inhibited by the mefloquine functional analogs, thiopeptides, which prevent the binding of IF2 (eIF5B ortholog) [7, 8] .

More recently, targeted screening identified a group of compounds that interfere with the 60S subunit binding of initiation factor eIF6 (figure, i.8). These compounds are eIFsixty 1 (clofazimine), eIFsixty 4, and eIFsixty 6 (eIFsixty 4 exhibits the most pronounced effect on the translation and cell growth) [142] . eIF6 is involved most ly in the preparation of newly synthesized ribosomes for the first round of translation after their export from the nucleus, but it may also take part in the regular translation cycle [143] . Unfortunately, due to the lack of structural data, it is unknown whether these compounds target the 60S subunit or the factor itself.

Ribosome inhibitors affecting termination. Small molecule drugs affecting translation termination can be potentially used in the treatment of diseases associated with the nonsense mutations in clinically relevant genes. However, very few specific termination inhibitors with a well characterized mechanism of action are known (fig  ure, t.2) . Although reported to specifically block termina tion in bacteria [45] , blasticidin S primarily affects the elongation stage in eukaryotes [46] . Another antibiotic, apidaecin (insect antimicrobial peptide), interacts with the bacterial ribosome and arrests translation at the stop codon [144] ; however, there is no information on its activity in the eukaryotic systems. There is evidence that the anticancer agent girodazole (also known as giroline or RP 49532A) specifically inhibits termination by interact BIOCHEMISTRY (Moscow) Vol. 85 No. 11 2020 ing with the E site of the 60S subunit and blocking the release of the nascent peptide [89, 145, 146] . Unfortunately, its high toxicity prevents its clinical use [147] , so the investigations of this compound have been dropped.

There are many more chemicals that are known to affect the stage preceding the release of the polypeptide, i.e., recognition of the stop codon, thus causing the stop codon readthrough ( figure, t.1 ). Effective and non toxic readthrough inducers could be widely used in medicine, as more than 10% of hereditary diseases are associated with the nonsense mutations in functionally important genes, while premature stop codons in tumor suppressors are often observed in cancer [148, 149] . Nonsense sup pression therapy is aimed to increase the frequency of aberrant amino acid incorporation at the stop codon instead of hydrolysis of the peptidyl tRNA [150, 151] .

The best characterized inhibitors of this type are aminoglycosides (see above), in particular, G418, paro momycin, and gentamicin X2. A decrease in the decoding accuracy caused by these inhibitors leads to the impaired stop codon recognition [110, 111, 113, 115, 152] . Some aminoglycosides (such as G418), when taken at certain concentrations, can induce readthrough without a signif icant decrease in the overall fidelity of protein synthesis or dramatic effect on the gene expression [113, 115, 117] . Much efforts have been made to develop synthetic aminoglycoside derivatives that would increase the readthrough rate without exhibiting toxicity. An example of such compound is NB124 [114, 119] .

However, it is likely impossible to completely elimi nate the side effects of aminoglycoside therapy, as the long term use of these compounds is associated with the risk of nephro and ototoxicity [111, 153 155] . Therefore, great efforts are directed to finding non aminoglycoside readthrough inducing compounds. The best known result of this search is ataluren (PTC124), a promising candidate in the treatment of cystic fibrosis and other hereditary diseases caused by nonsense muta tions [156] . Unfortunately, its clinical trials have not yet been very successful [157, 158] . Moreover, its activity as a readthrough inducer has been called into question, since ataluren was found to affect the stability of a reporter pro tein [159] . Beside ataluren, a number of other natural and synthetic non aminoglycoside compounds were found to induce the stop codon readthrough by a still unknown mechanism: GJ071, GJ072, RTC13, RTC14, BZ16, amlexanox, and others identified in high throughput bio chemical screenings (for review, see [150, 160] ). A similar effect is likely to be caused by TCP 1109 [161, 162] , a derivative of the antibacterial dipeptide negamycin. The latter binds to the bacterial 30S subunit near the DC and causes decoding errors by interfering with the elongation and termination (see [163] and references therein). The nonsense suppression activity in the eukaryotic system was also shown for doxorubicin [152] .

Surprisingly, several compounds have been found recently that dramatically enhance the effect of amino glycosides on the translation termination. The phthalim ide derivative CDX5 1, as well as the already mentioned mefloquine (and a number of other quinine derivatives), increase the efficiency of the G418 induced stop codon readthrough by two orders of magnitude [164, 165] . Such combination therapy might allow the use of low concen trations of aminoglycoside to ensure formation of suffi cient amounts of full length proteins encoded by genes with nonsense mutations without accompanying side effects.

Ribosome recycling inhibitors. The last stage of the translation cycle is ribosome recycling, which involves ribosomes release after peptidyl tRNA hydrolysis at the stop codon [166] . Ribosome recycling factors and the underlying mechanisms differ between bacteria and eukaryotes [167] . No chemicals that selectively inhibit this stage have been found yet. However, ribosome recy cling in bacteria is affected by aminoglycosides [168] . The structural basis of this activity [109] implies that these compounds might also affect eukaryotic ribosomes. Indeed, paromomycin, neomycin, and hygromycin have been shown to inhibit the dissociation of yeast ribosomes after termination (figure, r.1) [169, 170] . Translocation inhibitors, such as cycloheximide and lactimidomycin, have a similar effect [169, 170] . In addition, compounds suppressing the working cycle of the eEF2 translocase (see the text below) can have some effect on the dissocia tion of ribosomal subunits in yeast [169, 171] . This is somewhat surprising, however, as it is commonly believed that the involvement of translocase is a specific feature of the bacterial, rather than eukaryotic, type of ribosome recycling [167] . Thus, it cannot be ruled out that some of these observations are associated with the experimental system used by the authors to study ribosome recycling in yeast [169] .

In this section, we describe inhibitors that bind to translation factors and affect their activity ( Table 2 ). The binding can occur both in solution and on the ribosome during the translation cycle. In the latter case, the drugs can contact both the translation factor and the ribosomal components, but we nevertheless decided to describe them in a separate section.

Inhibitors of elongation factors. A large group of chemically diverse substances, usually derived from marine organisms (both bacteria and eukaryotes), target the eEF1A elongation factor [172, 173] . They bind to a specific site on the protein surface and modulate protein conformational dynamics, which results in the inability of eEF1A to dissociate from the ribosome after GTP hydro Table 1. BIOCHEMISTRY (Moscow) Vol. 85 No. 11 2020 lysis (figure, e.2), thus blocking elongation. It is unclear why this particular stage is especially attractive for inhibi tion, but the same mechanism of action is shared by unre lated compounds, such as cyclic depsipeptides from the didemnin group [174] (didemnins A, B, C, and M [175, 176] , aplidine/plitidipsin [177] , tamandarins A and B [178] ), ansamycins (cytotrienin A [179] and similar trienomycins, trierixin, quinotrierixin and ansatrienins A and B, also called mycotrienins I and II [173, 180] ), and the cyclic peptide ternatin [173] . Nannocystin A is anoth er macrocyclic compound with a more complex struc ture, but the same mechanism of action [181] . All these drugs are, in fact, eukaryote specific functional analogs of the well known antibacterial inhibitor kirromycin, which stabilizes the EF1α complex with aminoacyl tRNA on the ribosome [7] . A distinct group of compounds uses a similar mech anism to inhibit another elongation factor, the eEF2 translocase (figure, e.7). The classic examples are the fungicide sordarin and its numerous derivatives (morinia fungin, GM193663, GR135402, azasordarins, etc.), which target eEF2 in some fungi, but are harmless for human cells [182 185] . Their binding to eEF2 [186, 187] prevents its dissociation from the ribosome and thus freezes the elongation complex in a post translocational state [188] . The action of sordarin resembles that of the well known antibacterial antibiotic fusidic acid, although there is a difference in the details of its interaction with the factor (discussed in [188] ). Fusidic acid itself is likely unable to specifically inhibit translocation in eukaryotic cells, although at high concentration it may have some effects [189] .

The inhibitory activity of sordarin requires diph thamide, an AE specific, uniquely modified amino acid only found in eEF2 [190] . Interestingly, diphthamide is a target for a large group of bacterial protein toxins (diph theria toxin and others) that inactivate eEF2 by ADP ribosylation of this residue. Yet, inhibitors of protein nature are beyond the scope of our review, so we refer interested readers to the publication [191] .

The question of whether there is a sordarin analogue that is active in mammalian cells is still open. Most like ly, similar mechanism of action can be attributed to the cyclic peptide bouvardin (anticancer drug) and its deriva tives (RA VII, SVC112, etc.) [192, 193] . It had been reported that purpuromycin may act in a similar way [194] , but later its activity was linked to the inhibition of aminoacylation (see below).

Recently, the antimalarial drug DDD107498, which is non toxic to human cells, has been discovered and shown to target eEF2 of the malaria parasite [195] . Interestingly, it contains the same quinoline heterocycle as the above mefloquine. It cannot be ruled out that all quinine like compounds used for malaria treatment dis rupt the interaction of elongation factors with the ribo some [130] . eIF5A is another elongation factor (formerly erro neously believed to be an initiation factor) that can also serve as a target for the inhibitors, more precisely, those that target the synthesis of hypusine, a uniquely modified amino acid residue required for the eIF5A activity [196] . Conversion of the conserved lysine residue to hypusine can be blocked at different stages by a number of com pounds, leading to the accumulation of inactive factor. Such inhibitors include GC7, semapimod (CNI1493), deoxyspergualin (gusperimus), DHSI15, ciclopirox, deferiprone, and mimosine (see review in [196] ). These compounds, however, are not highly specific. Some of them inactivate other enzymes involved in the metabolism and transport of polyamines and other molecules, while ciclopirox, deferiprone, and mimosine are iron chelators. Mimosine was previously shown to indirectly target another translation factor, eIF3, by specifically downreg ulating the production of the eIF3a subunit [197] .

Inhibitors of initiation factors. In contrast to relative ly conserved elongation factors, many eukaryotic compo nents of the translation initiation machinery have appeared in the evolution with the emergence of riboso mal scanning and, therefore, are eukaryote specific. This primarily refers to the eIF4 group of initiation factors, which facilitate mRNA binding to the ribosome and direct scanning [1] . The small cap binding protein eIF4E, a component of the heterotrimeric eIF4F com plex, anchors to the m 7 G capped 5′ end of mRNA, while its partner, the mRNA binding factor eIF4G, serves as a platform for the ATP dependent RNA helicase eIF4A and bridges mRNA with the factors bound to the riboso mal 43S preinitiation complex [1] .

Targeted high throughput screening [198] identified compound 4EGI 1 that binds to eIF4E and allosterically disrupts its association with eIF4G ( figure, i.3) , while simultaneously enhancing its interaction with the inhibitory protein 4E BP1 [199, 200] . Thus, 4EGI 1 sup presses cap dependent mRNA translation with no effect on the transcripts employing non canonical initiation mechanisms [e.g., viral mRNAs with internal ribosome entry sites (IRESs) or cellular mRNAs with cap inde pendent translation enhancers (CITEs)] [201] . Another screening identified two more compounds with a similar mechanism of action, 4E1RCat [202] and 4E2RCat [203] . The latter exhibited strong antiviral activity and was able to suppress the propagation of coronaviruses.

There is a hypothesis that some cardiac glycosides (e.g., ouabain) affect translation in a similar way [204] . Transcriptional changes induced by cardiac glycosides strongly resemble those caused by the classic elongation inhibitors (cycloheximide, anisomycin, emetine, etc.) [205] . Moreover, Perne et al. showed suppression of pro tein synthesis in the cells treated with these substances [206] . However, these effects are most likely secondary or temporary, since the similarity of transcription patterns, strongly pronounced at the 6th hour of exposure, disap BIOCHEMISTRY (Moscow) Vol. 85 No. 11 2020 peared by 24 h [205] . It is also possible that these drugs inhibit the PI3K/Akt/mTOR signaling pathway [207] (see the text below) or the initiation factor eIF4A [208] . However, in direct experiments in a mammalian cell free system, cardiac glycosides failed to noticeably inhibit translation of reporter mRNAs (Lashkevich and Dmitriev, personal communication) .

eIF4E interaction with the m 7 G cap at the mRNA 5′ end is also very important. Kentsis et al. stated [209] that this interaction can be disrupted by a competitive inhibitor (figure, i.4) -the antiviral drug ribavirin (and its triphosphorylated form), which structurally resembles the m 7 G cap. This statement was challenged by two separate groups [210, 211] , yet the authors of the original study remained unconvinced [212] . Later, ribavirin was shown to suppress the Akt signaling pathway [213] , which can explain its effects.

The J. Pelletier group has discovered a number of new inhibitors that target another component of the eIF4F complex -the RNA helicase eIF4A [214, 215] . Hippuristanol, a polyoxygenated steroid, binds and allosterically inhibits eIF4A (figure, i.5) [216] , while pateamine A prevents eIF4A interaction with eIF4G (fig ure, i.2) and increases its RNA binding activity [217, 218] . Rocaglates (including rocaglamide A, silvestrol, and other flavaglines) also suppress the activity of eIF4A, but their mechanism of action is less characterized (figure, i.5) [ 219 221] . Ribosome profiling revealed that eIF4A inhibition by some of these drugs causes a sequence specific arrest of the scanning ribosome at the 5′ untranslated region (see discussion in [221] ). In the latest study, rocaglates were found to act in a dual fashion: first, they disturb the landing of eIF4F and the initiator complex on the 5′ cap and then inhibit the ribosomal scanning [221] . Numerous derivatives of the eIF4A inhibitors have been obtained and characterized for the use in the anticancer therapy [221, 222] . Recent screen ing revealed two new, highly specific ATP competitive inhibitors of eIF4A -elisabatin A and allolaurinterol [223] . There are also a number of drugs (e.g., nucleoside analogs such as hypericin) that target translational RNA helicases (not only eIF4A, but also DDX3) in a less spe cific manner [214] .

Translation initiation is the primary target of aurin tricarboxylic acid (ATA) and similar triphenylmethane and xanthene dyes (pyrocatechol violet, gallin, and some others) that are universal inhibitors widely used in early in vitro studies of protein synthesis [18, 224, 225] . However, the specificity of their action is questioned, since at high er concentrations, they can also inhibit other translation steps (reviewed in [10] ). ATA and similar chemicals are likely to reduce both specific and nonspecific RNA pro tein interactions [226, 227] , thus inhibiting factor dependent and non enzymatic tRNA binding to the ribo some during initiation (figure, i.1) [228] . This relaxed specificity, as well as inability to enter intact mammalian cells [229] , have led to the loss of interest in their use for studying eukaryotic translation.

However, in 2004, while searching for new transla tion inhibitors, several similar xanthene based com pounds, such as gallein and fluorescein derivatives, were discovered that produced an interesting mRNA specific effect on the translation of reporter transcripts [230] . Their addition to a cell free system suppressed cap dependent translation, but had no effect on the protein synthesis directed by the IRES of the hepatitis C virus (HCV). Among other features, this IRES is known to provide the eIF2 independent translation initiation under certain conditions [231, 232] . A more detailed study of compounds NSC 119889 and NSC 119893 (the latter is cell permeable) showed that they prevent the binding of the initiator Met tRNA i to eIF2 (figure, i.1) and thereby block the formation of the 43S preinitiation complex [232] , an essential intermediate of the canonical translation initiation.

Several other translation factors (e.g., eIF1AX and eIF3 [197, 233] ) were also identified as targets for small molecule inhibitors, but these interactions have not yet been sufficiently studied. Furthermore, factor mediated functions can also be blocked by the non hydrolyzable analogs of ribonucleoside triphosphates. Thus, GTP analogs (GMPPNP and GMPPCP) inhibit initiation, elongation, and termination stages, while ATP analogs usually interfere with initiation, ribosome recycling and functioning of (ARSases). However, these inhibitors are obviously nonspecific and, in most cases, cell imperme able [229] .

Beside translation factors, small chemical com pounds can target other auxiliary components of the pro tein synthesis machinery. Unsurprisingly, inhibitors of ARSases specifically block protein synthesis (Table 2 and figure, e.1). Sulfonamides, hydroxamates, and other derivatives of amino acids and peptides, as well as esters and hydroxamates of aminoacyl adenylates, inhibit the synthesis of the corresponding aminoacyl tRNAs. For example, L methioninol, methionyl sulfamide, L methionyl hydroxamate, and methionyl adenylate deriv atives specifically inhibit the synthesis of Met tRNA [234, 235] , while the Trp antagonist 6 fluorotryptophan inhibits amino acid activation in the tryptophanyl adeny late synthesis [236] . There are numerous studies explor ing such amino acid derivatives [10] , and this field is growing rapidly due to the development of computer aided drug design [237 239 ]. In rare cases, amino acid analogs (e.g., ethionine, an S ethyl analogue of Met) not only inhibit ARSases, but can be also incorporated into proteins, leading to cell death [240] . BIOCHEMISTRY (Moscow) Vol. 85 No. 11 2020 Most of the above compounds are universal protein synthesis inhibitors and can freely pass into a living cell. However, due to the high similarity to amino acids, they can affect other cellular processes. In addition, their effective concentrations are usually in a relatively high (millimolar) range. However, there are several specific ARSase inhibitors produced by some pathogenic organ isms with a much higher affinity for their targets. For example, borrelidin, a product of marine bacteria, is a highly specific inhibitor of Thr tRNA synthetase [241] ; ochratoxin A from mold fungi targets Phe tRNA syn thetase [242] ; febrifugine and halofuginone inhibit Pro tRNA synthetase [243, 244] , while tavaborole inhibits Leu tRNA synthetase [245] . Ile tRNA synthetase is tar geted by spirofungin A [246] and reveromycin A [247, 248] , although the effects of the latter might be cell type specific [249] . Finally, the unusual inhibitor pur puromycin can bind any tRNA and prevent its aminoacy lation without affecting the binding of already aminoacy lated tRNAs to the elongation factors, ribosome, and other translational components [250] , which makes it somewhat special.

Many ARSase inhibitors are of great medical impor tance, as they have the immunosuppressive activity and are extensively used as antimicrobial, antitumor, and antiparasitic agents [239, 251] . Their effects on the living cell are usually mediated not only by the suppression of protein synthesis, but also by triggering a special type of stress response [252] caused by the accumulation of dea cylated tRNAs in the cytoplasm and collisions of translat ing ribosomes (see below).

Like any other complex process in the cell, almost every step of protein biosynthesis is precisely regulated at multiple levels. Eukaryotes have a number of signaling cascades ending in specialized enzymes that modify translational components [253, 254] . These regulatory pathways deserve a separate review, so we will not discuss all of them, but will focus on some components of these cascades serving as targets for protein synthesis inhibitors (Table 3 and figure, s.1 s.9).

Inhibitors of mTOR kinase and the PI3K/Akt/mTOR signaling cascade. A very important signaling pathway is the PI3K/Akt/mTOR regulatory cascade, which inte grates signals from insulin and a number of growth fac tors, as well as from the sensors of nutrient availability [255, 256] . One of the direct substrates of the mTOR kinase is the above mentioned inhibitor protein 4E BP1. When phosphorylated, it remains inactive and does not interfere with the functioning of the cap binding factor eIF4E [256] . But if mTOR is inhibited, 4E BP1 displaces eIF4G from its complex with eIF4E. This results in a moderate decline in total protein synthesis and a much more severe suppression of translation of a special class of mRNA transcripts with the 5′ terminal oligopyrimidine tract (5′ TOP) [201, 255] . 5′ TOP mRNAs mainly encode components of the translational apparatus (ribo somal proteins, translation factors, etc.) [257, 258] , the synthesis of which is especially important for actively pro liferating and metabolizing cells, including tumor and stem cells [259] . The activity of this pathway strongly decreases with age [260] and can affect the lifespan [261] . mTOR substrates also include S6 kinases 1/2, which phosphorylate the ribosomal protein eS6 (RPS6), transla tion initiation factor eIF4B, eIF4A inhibitory protein PDCD4, and, indirectly, eEF2 [253, 254] . All this makes mTOR an attractive target for clinically relevant drugs [259] . By now, many mTOR inhibitors have already been found (see Table 3 for the most commonly used ones). They can be divided into two types: direct ATP competi tive inhibitors that target the active site of the kinase (fig ure, s.6) and allosteric inhibitors that act indirectly through the FKBP12 protein, a component of the mTORC1 kinase complex (figure, s.7). mTORC1 is main ly responsible for the translation related branch of the mTOR pathway. Many commonly used drugs, such as torin 1, torin 2, INK128, AZD 8055, OSI 027, WYE 132, Ku0063794, and PP242 [255, 262] , are direct mTOR inhibitors, while allosteric inhibitors include the widely known natural macrolide rapamycin (sirolimus) and its synthetic analogs called rapalogs (everolimus, tem sirolimus, and ridaforolimus) [255, 259] . Rapalogs have long been successfully used in anticancer therapy and as immunosuppressants in organ transplantation. There is also a growing interest in mTOR inhibitors as geroprotec tors, since they have been shown to increase longevity in a number of animal models [261] .

Some compounds known to interfere with the cap dependent translation target the upstream components of the PI3K/Akt/mTOR cascade rather than mTOR itself (figure, s.5). As we move up the cascade, the effects of the inhibitors expand and increase, while the specificity decreases. Nevertheless, PI3K inhibitors (e.g., wortman nin and LY294002) are often used to suppress the cap dependent translation. It should be noted, however, that the kinase domains of PI3K and mTOR belong to the same family and thus share common inhibitors [263] . The top hits in a recent screening for the compounds sup pressing translation of 5′ TOP mRNAs [264] included inhibitors of each of the PI3K/Akt/mTOR cascade com ponents (and quite unexpectedly, the GCN2 kinase; see below). It is also possible that cardiac glycosides target the mTOR pathway with a certain degree of specificity [207] .

However, it should be kept in mind that mTOR has several dozen substrates, including those unrelated to translation. Therefore, the effect of its inhibitors on the protein synthesis is not highly specific. The same can be said about compounds targeting the MAPK cascades BIOCHEMISTRY (Moscow) Vol. 85 No. 11 2020 Table 1 (Ras/ERK/RSK and p38MAPK/Mnk1/2), which share some components with the PI3K/Akt/mTOR pathway [253, 254] . Although MAPK signaling regulates the activ ity of some general translation factors, such as eIF4E, eIF4B, and eEF2, its effects on the cell functions are too broad; besides, there is no full understanding of how these cascades affect protein synthesis in general.

Modulators of eIF2 phosphorylation. Protein kinases phosphorylating the initiation factor eIF2 are much more specific. Mammals have four such kinases: GCN2, HRI, PERK, and PKR [265, 266] . eIF2 delivers the initiator Met tRNA i to the P site of the 40S subunit and provides scanning and AUG selection [5] . It is a key factor neces sary for all eukaryotic mRNAs, except extremely rare cases when the start codon is positioned into the P site without scanning (discussed in [267] ). Phosphorylation of the eIF2 α subunit prevents protein dissociation from the inactive complex with eIF2B (guanine nucleotide exchange factor) and thus removes it form the active pool. Until recently, it had been believed that eIF2 is the only substrate for these four kinases; now we know that this is not entirely true [265, 268] . Nevertheless, there is no doubt that the main function of these kinases is regulation of protein synthesis. Therefore, in this section, we will discuss compounds modulating their activity.

BTdCPU and other N,N′ diaryl urea derivatives are specific HRI activators (figure, s.2), which are also con sidered as promising antitumor drugs [269] . CCT020312 and MK 28 are pharmacological activators of PERK (fig ure, s.1) and can be potentially used in the treatment of neuropathies [270, 271] . Specific activators of GCN2 kinase ( figure, s.3) have not yet been sufficiently studied; however, recent screening identified two candidatessmall molecules dabrafenib and MK1775 [264] . Interestingly, their addition to the human cells results in the suppression of the 5′ TOP mRNA translation, strong ly resembling the effect of mTOR inhibitors (see above). Although the underlying mechanism has not been eluci dated, earlier studies suggest a link between GCN2 and 5′ TOP mRNA, mediated by TIA 1/TIAR proteins [272] .

Another possibility to dramatically increase the level of eIF2 phosphorylation is inhibition of the eIF2 specif ic phosphatase complexes. Thus, salubrinal and its water soluble derivative Sal003 inhibit protein synthesis by inactivating stress inducible GADD34/PP1 and consti tutively active CReP/PP1 complexes (figure, p.4) [273, 274] . An increase in the eIF2 phosphorylation has also been reported when the cells were treated with okadaic acid, an inhibitor of PP2A phosphatase [275] ; however, it is unclear if this effect was specific, as eIF2α is most likely a substrate of PP1 rather than PP2A [276] . Nevertheless, both phosphatases play an important role in the translational control [277] and can be promising tar gets in the inhibition of protein synthesis.

Not only activators, but also many suppressors of the four kinases have been identified. They, however, have little or no effect on the protein synthesis level in living cell under normal conditions. At the same time, they prevent a decline in the translation under stress con ditions. Since the transient translational block is an important part of the stress response, its disruption may have detrimental consequences for the stressed cell. Although these specific effects are important in the antiviral therapy, treatment of neurological disorders, and for promoting the effects of tumor chemotherapeu tic drugs in oncology, they are beyond the scope of our review. Those interested in this topic can be referred to the review by Joshi et al. [268] .

Nevertheless, we would like to mention the small molecule trans ISRIB, which has a very unusual mecha nism of action [278] . It binds to eIF2B and, up to certain limits, maintains its GDP/GTP exchanging activity toward phosphorylated eIF2 (see details in [279] ). As protein synthesis in the brain is necessary for the short term memory consolidation into the long term memory, ISRIB can promote memory and enhance cognitive abil ities in animals [278] .

When discussing the inhibitory effect of eIF2 phos phorylation, we should also mention several chemicals that are often used by researchers for its indirect induc tion. These include tunicamycin (inhibitor of protein gly cosylation causing endoplasmic reticulum stress), thapsi gargin (inducer of Ca 2+ release from the intracellular stores), and dithiothreitol (a thiol reducing agent, which triggers unfolded protein response, or UPR). All of them indirectly activate PERK. Other widely used chemicals are sodium arsenite (selectively targets SH groups in some proteins and triggers HRI activation), nonspecific oxidants such as hydrogen peroxide (also probably induces HRI), long double stranded RNAs (PKR activa tors), some of the already mentioned amino acids analog, and ARSase inhibitors (indirectly activate GCN2). eIF2 phosphorylation is also induced by various blockers of the mitochondrial respiratory chain, ATP synthase, and gly colysis (e.g., myxothiazole, 2 deoxyglucose, oligomycin) and other inhibitors of cell energy metabolism. However, we will not discuss them in detail, since their action is nonspecific, while translation inhibition is only one of the components of the integrated stress response (ISR) that is triggered in cells by the action of stress factors [265, 266] .

Inducers of eEF2 phosphorylation. The eEF2 elonga tion factor is inhibited by phosphorylation. Its activity is controlled by several kinases, but the main one is the spe cialized kinase eEF2K. Being a substrate of S6K and mTOR, it is negatively regulated by the PI3K/Akt/mTOR cascade. When this cascade is suppressed, eEF2K is acti vated, while eEF2 is partially suppressed [253] . eEF2K inhibitors produce no noticeable effect on the cells under normal conditions (see [280] ), whereas eEF2K activators can significantly reduce the efficiency of translation (fig ure, s.8). For example, the polyketide myriaporone 3/4, which resembles the above described ribosome inhibitors BIOCHEMISTRY (Moscow) Vol. 85 No. 11 2020 tedanolide and 13 deoxytedanolide [90] , induces eEF2 phosphorylation [92] and thus negatively affects transla tion [91] . The antiviral drug nelfinavir [281] and com pound NH125 (previously mistakenly thought to be an eEF2K inhibitor) have the same effect, although in the latter case, its association with eEF2K is not obvious [269, 282] . Modulators of the eEF2K activity are gaining an increasing attention of researchers due to the emerging role of this kinase in the development of depression, epilepsy, and neurodegenerative disorders [283] .

AMPK is another kinase involved in the regulation of protein biosynthesis that should be mentioned in the con text of eEF2 phosphorylation. It is a sensor of cell energy status and, when activated, contributes to the reduction of the elongation rate by signaling to eEF2K and phos phorylation of eEF2 [253] . There are many small mole cules activating AMPK (figure, s.9) either indirectly via ATP depletion (e.g., 2 deoxyglucose, oligomycin, and the antidiabetic drug metformin) or directly. The latter include A 769622, benzimidazole derivative 991, and the most famous AMPK activator AICAR used by unscrupu lous athletes for doping [284] . All these compounds even tually induce eEF2 phosphorylation, thereby decreasing the translation efficiency (discussed in detail in [285] ). Needless to say, similar to the effects of inhibitors of the mTOR pathway (which shares some substrates with AMPK), the effects of AMPK activators on the cells are broad and not limited to the suppression of protein syn thesis [254] .

When studying the effects of translation inhibitors, one cannot ignore the response that occurs in cells upon partial or complete cessation of protein synthesis. Eukaryotes have several mechanisms that monitor the status of the general translational activity, including avail ability of amino acids, fidelity of the co translational folding, and correct addressing of protein products. They are also involved in the translation quality control of indi vidual transcripts by each ribosome [6, 286] . At the end of the last century, it was shown that mammalian cells exposed to anisomycin or some other elongation inhibitors activate a special program called the ribotoxic stress response [287] . Interestingly, despite the same level of translation suppression, some inhibitors (anisomycin, deoxynivalenol) trigger a significant activation of the JNK/p38MAPK signaling pathway, leading to the rRNA cleavage and cell death, while others (for example, pactamycin) completely lack this ability [287 290] . It was further revealed that even chemically similar substances with the same mechanism of action might differ funda mentally in the stress level they cause. For example, diacetylanisomycin, a close derivative of anisomycin, does not activate the stress response at all [288] . Trichothecene mycotoxins with different side radicals vary dramatically in the ability to induce the response [288, 291, 292] , although all of them inhibit the PTC. Theopederin, onnamide A, and 13 deoxytedanolide bind to different sites on the ribosome and inhibit transloca tion; however, they activate ribotoxic stress similarly to anisomycin [86, 293] . On the other hand, the transloca tion inhibitor cycloheximide is a relatively weak stress inducer [287, 294] , while lactimidomycin (another glu tarimide) strongly activates p38MAPK [294] . Cytotrienin A, while targeting eEF1A, also causes severe ribotoxic stress, [295] , as well as some aminoglycosides, the ototoxicity of which may be associated, in particular, with the induction of this type of stress [296] .

Until recently, the mechanism for the induction of the ribotoxic stress response had remained a mystery, although the intermediate components of the cascade -JNK and p38MAPK kinases -were identified in the very first study on this topic [287] . Later, PKR and HCK kinases were also named as candidates for the mediators or primary inducers [287 290 ]. Recently, it was found that some elongation inhibitors, normally inducing the ribotoxic stress response, fail to trigger it when used in higher concentrations [67] , suggesting that this phenom enon is based on the activation of certain signaling cas cades by the two or three colliding ribosomes. When elon gation is partially blocked by a drug, these collisions occur much more frequently, resulting in the induction of generalized cell response. However, if all ribosomes are arrested simultaneously, such collisions become impossi ble. This hypothesis was brilliantly confirmed in a recent study by the R. Green group [67] . The authors showed that the collided ribosomes orchestrate three different molecular pathways that have been previously considered independent. In the case of a single collision, the mecha nisms of ribosomal quality control (RQC) are induced [6, 286] , leading to the disassembly of the stalled elongation complex without triggering the general response. As the number of such events increases (for example, during amino acid starvation), the binding of GCN1 and GCN20 proteins and the MAP3K cascade kinase ZAK to the colliding ribosomes activates GCN2 kinase, which phosphorylates eIF2 (see above). If the number of colli sion sharply increases (e.g., upon antibiotic treatment or exposure to ultraviolet radiation), ribosome bound ZAK activates the JNK/p38MAPK signaling cascade and trig gers the ribotoxic stress response [67, 294] . Indeed, it has long been known that this type of stress can be partially suppressed by the small molecule inhibitors DHP 2, sorafenib, and nilotinib, which target ZAK [297 299 ]. These findings might also explain recent observation that the cell response to ARSase inhibitors (see above) is dis similar to that induced by regular amino acid starvation [252] . The response to deacylated tRNA and frequent ribosome collisions is based on the activation of GCN2 BIOCHEMISTRY (Moscow) Vol. 85 No. 11 2020 and/or MAPK stress kinases and occurs via different sce nario than the starvation response, which "senses" amino acids availability through a cascade of interactions involv ing mTOR kinase [300] .

Protein biosynthesis is one of the major metabolic processes that is crucial for maintaining all body func tions. In actively proliferating cells, it consumes a signif icant portion of their energy and resources. Disruption of protein biosynthesis leads to an inevitable arrest of cell division and death. It is not surprising that translation is the "Achilles heel" of tumor cells and actively propagat ing viruses [136, 203, 259, 301, 302] . The development of small molecule inhibitors for manipulating protein syn thesis is very important in the anticancer and immuno suppressive therapy, treatment of hereditary, viral and fungal diseases, neurology, parasitology and geriatrics, solving problems of lifespan extension, as well as agricul ture, veterinary, and other fields [8, 27, 132, 148, 151, 155, 214, 259, 261, 301, 302] . However, their clinical use is still limited due to the cytotoxicity related side effects. Rapid development of high throughput screening tech niques [303] , as well as machine learning [304] and com puter modeling, in combination with modern methods of structural analysis and chemical synthesis [84, 237 239] has given hope for rapid progress in the development of new drug derivatives with improved therapeutic proper ties. The impact of systems biology approaches on the search for and characterization of new inhibitors will also undoubtedly increase. For example, comparison of tran scription patterns helps to determine the mechanisms of action of newly discovered and previously known com pounds [39, 205] . In our opinion, another underestimat ed approach is the combination therapy with different types of inhibitors [164, 165] . Finally, due to the variety of action mechanisms, many of the described com pounds can be widely used not only in practice, but also in basic research to study the principles of protein syn thesis and translational control [4, 16, 24, 82, 127, 134, 267, 305] .

In this review, we attempted to describe the major classes of small molecule inhibitors of eukaryotic transla tion. However, the number of currently known drugs with this activity, even those with characterized mechanism of action, reaches several hundred, so it was impossible to review all of them in one article. Besides, this list is con stantly growing. Therefore, we have developed a con stantly updated Eukaryotic Protein Synthesis Inhibiting Compounds (EuPSIC) database that contains additional information that can be used to facilitate machine pro cessing, such as PubChem numbers and literature refer ences with PubMed IDs. The database can be found at http://eupsic.belozersky.msu.ru.

Funding. This work was supported by the Russian Science Foundation (project no. 18 14 00291) .

The organizing principles of eukaryotic ribosome recruitment

High resolution structure of the eukaryotic 80S ribosome

Extensions, extra factors, and extreme complexity: ribosomal structures provide insights into eukaryotic translation

Insights into the mechanisms of eukaryotic translation gained with ribo some profiling

Structural insights into the mechanism of scanning and start codon recognition in eukaryotic translation initiation

Roadblocks and res olutions in eukaryotic translation

The A Z of bacterial translation inhibitors

Ribosome targeting antibiotics: modes of action, mechanisms of resistance, and implica tions for drug design

Crystal structure of eukaryotic ribosome and its complexes with inhibitors

Inhibitors of protein biosynthesis

Inhibitors of ribosome functions

The use of inhibitors in studies on protein synthesis

Novel Inhibitors of Translation in Eukaryotic Systems

Structural basis for the inhibition of the eukaryotic ribo some

3H)anisomycin binding to eukaryotic ribosomes

High resolution ribosome profiling defines discrete ribosome elongation states and translational regulation during cellular stress

Inhibitors of polypeptide elongation on yeast polysomes

Initia tion of the polypeptide chain by reticulocyte cell free systems

Mechanism of inhibition of eukaryotic protein synthesis by trichothecene fungal toxins

The amaryllidaceae alkaloid hae manthamine binds the eukaryotic ribosome to repress can cer cell growth

Binding of [3H]narcicla sine to eukaryotic ribosomes. A study on a structure activi ty relationship

Inhibitors of protein synthesis in eukarytic cells. Comparative effects of some amaryllidaceae alkaloids

Inhibition of translation in eukaryotic systems by harring tonine

Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes

Inhibition of protein synthesis in intact HeLa cells

U2504 determines the species specificity of the A site cleft antibiotics: the structures of tiamulin, homoharringtonine, and bruceantin bound to the ribosome

A review of omac etaxine: a chronic myeloid leukemia treatment resurrected

Turning the tide: natural products and natural product inspired chemicals as poten tial counters to SARS CoV 2 infection

Harringtonine, an inhibitor of initia tion of protein biosynthesis

Structural require ments for the inhibitory action of 12,13 epoxytri chothecenes on protein synthesis in eukaryotes

Competition between trichodermin and several other sesquiterpene antibiotics for binding to their receptor site(s) on eukaryotic ribosomes

Protein synthesis inhi bition by 8 oxo 12,13 epoxytrichothecenes

Inhibition of eukary otic ribosomal function by the sesquiterpenoid antibiotic fusarenon X

Inhibition of eukaryotic translation elonga tion by cycloheximide and lactimidomycin

Eukaryotic protein synthesis inhibitors identified by comparison of cytotoxicity profiles

Inhibition of eukaryotic transla tion by the antitumor natural product agelastatin A

Antitumor activi ty of bruceantin: an old drug with new promise

Bruceantin, a novel inhibitor of peptide bond for mation

Identification of nagilactone E as a protein synthesis inhibitor with anticancer activity

Distinct tRNA accommoda tion intermediates observed on the ribosome with the antibiotics hygromycin A and A201A

A binds to a site on the 70S ribosome distinct from previ ously seen antibiotics

Biochemical studies on bactobolin in relation to actinobolin

The effect of the aminoacyl 4 aminohexosyl cytosine group of antibiotics on ribosomal peptidyl transferase

Structures of five antibiotics bound at the peptidyl trans ferase center of the large ribosomal subunit

Blasticidin S inhibits translation by trapping deformed tRNA on the ribosome

CTELS: a cell free system for the analysis of trans lation termination rate

Inhibition of translation in bacterial and eukaryotic systems by the antibiotic anthelmycin (hikizimycin)

Peptidyl transferase activity in wheat germ ribo somes. Effect of some antibiotics

A conserved secondary structural motif in 23S rRNA defines the site of interaction of amicetin, a universal inhibitor of peptide bond formation

The peculiar mode of trans lation elongation inhibition by antitumor drug harring tonin

Peptidyl trans ferase inhibitors arrest the ribosome at specific amino acid codons: insights from an integrated approach

Computational approach for calculating the probability of eukaryotic translation initiation from ribo seq data that takes into account leaky scanning

Context specific inhibition of translation by riboso mal antibiotics targeting the peptidyl transferase center

2020 inhibitory activity of the antibiotic tigecycline during pro tein synthesis

Translation attenuation by minocycline enhances longevity and proteostasis in old post stress responsive organisms, eLife

Minocycline: far beyond an antibiotic

The mechanism by which cycloheximide and related glutarimide antibiotics inhibit peptide synthesis on reticulocyte ribosomes

Crystal structure of the eukaryotic 60S ribosomal subunit in complex with initiation factor 6

Conversion of 48S transla tion preinitiation complexes into 80S initiation complexes as revealed by toeprinting

Structure and dynamics of the mam malian ribosomal pretranslocation complex

Structure function insights reveal the human ribosome as a cancer target for antibiotics

Translation elon gation after assembly of ribosomes on the Cricket paralysis virus internal ribosomal entry site without initiation factors or initiator tRNA

The growing toolbox for protein synthesis studies

Versatile synthetic route to cyclo heximide and analogues that potently inhibit translation elongation

Single copy gene for the chicken non histone chromosomal pro tein HMG 17

Bioactive streptoglutarimides A J from the marine derived Streptomyces sp. ZZ741

Lactimidomycin, a new glutarimide group antibiotic. Production, isolation, struc ture and biological activity

Global mapping of translation initiation sites in mammalian cells at single nucleotide resolution

Understanding the role of intermolecu lar interactions between lissoclimides and the eukaryotic ribosome

Synthesis facilitates an under standing of the structural basis for translation inhibition by the lissoclimides

Chlorolisso climides: new inhibitors of eukaryotic protein synthesis

Inhibition of pro tein synthesis and activation of stress activated protein kinases by onnamide A and theopederin B, antitumor marine natural products

Studies on the mechanism of action of pederine

Inhi bition of protein synthesis in reticulocytes by antibiotics. V. Mechanism of action of pederine, an inhibitor of initiation and elongation

The structures of antibiotics bound to the E site region of the 50 S ribosomal subunit of Haloarcula marismortui: 13 deoxytedanolide and girodazole

Tedanolide and the evolution of polyketide inhibitors of eukaryotic protein synthesis

Myriaporone 3/4 structureactivity relationship studies define a pharmacophore target ing eukaryotic protein synthesis

The marine polyketide myriaporone 3/4 stalls translation by targeting the elongation phase

Amicoumacin A induces cancer cell death by targeting the eukaryotic ribosome

Cryo EM structure of the Plasmodium falciparum 80S ribosome bound to the anti protozoan drug emetine

Construction and characterization of Chinese hamster cell EmtA EmtB dou ble mutants

Cryptopleurine resistance: genetic locus for a 40S riboso mal component in Saccharomyces cerevisiae

Mutants of CHO cells resistant to the protein synthesis inhibitors, crypto pleurine and tylocrebrine: genetic and biochemical evi dence for common site of action of emetine, crypto pleurine, tylocrebine, and tubulosine

Cryptopleurine-an inhibitor of translocation

Specific inhibition of translocation by tubulosine in eukaryotic polysomes

Crypto pleurine analogs with modification of e ring exhibit differ ent mechanism to rac cryptopleurine and tylo phorine

Inhibition of protein synthesis in Ehrlich ascites tumour cells by the phenanthrene alkaloids tylophorine, tylocrebrine and cryptopleurine

Amicoumacin a inhibits translation by stabilizing mRNA interaction with the ribosome

The structural basis for the action of the antibiotics tetracycline, pactamycin, and hygromycin B on the 30S ribosomal subunit

Dissecting the ribosomal inhibition mechanisms of edeine and pactamycin: the universally conserved residues G693 and C795 regulate P site RNA binding

Structural basis for hygromycin B inhibition of protein biosynthesis

Studies on the mode of action of hygromycin B, an inhibitor of translocation in eukaryotes

Interaction of kanamycin and related antibiotics with the large subunit of ribosomes and the inhibition of translocation

Inhibition of ribosomal translocation by aminoglycoside antibiotics

Structural basis for amino glycoside inhibition of bacterial ribosome recycling

Aminoglycoside inter actions and impacts on the eukaryotic ribosome

Aminoglycosides: an overview, Cold Spring Harb

Aminoglycoside antibiotics and eukaryotic protein synthe sis: structure-function relationships in the stimulation of misreading with a wheat embryo system

Aminoglycoside antibiotics restore CFTR function by overcoming premature stop mutations

Increased selectivity toward cytoplasmic versus mitochon drial ribosome confers improved efficiency of synthetic aminoglycosides in fixing damaged genes: a strategy for treatment of genetic diseases caused by nonsense muta tions

Stop codon context influences genome wide stimulation of termination codon readthrough by aminoglycosides, eLife

Frontotemporal dementia non sense mutation of progranulin rescued by aminoglycosides

Design of novel amino glycoside derivatives with enhanced suppression of dis eases causing nonsense mutations

When proteins start to make sense: fine tuning aminoglycosides for PTC suppres sion therapy

Characterization of new generation aminoglycoside promoting premature termination codon readthrough in cancer cells

Novel aminoglycosides increase SMN levels in spinal muscular atrophy fibroblasts

Gentamicin B1 is a minor gentamicin component with major nonsense mutation suppression activity

Eukaryotic ribosomal RNA determinants of aminoglycoside resistance

Basis for prokaryotic specificity of action of aminoglyco side antibiotics

Aminoglycoside induced nephrotoxicity

Genetic susceptibil ity to aminoglycoside ototoxicity

The science of puromycin: from studies of ribosome function to applications in biotechnology

Genome wide search for novel human uORFs and N terminal protein extensions using ribosomal footprinting

Elongation inhibitors do not prevent the release of puromycylated nascent polypeptide chains from ribosomes

Puromycin reactivity does not accurately localize translation at the subcellular level

Mefloquine targets the Plasmodium falciparum 80S ribosome to inhibit protein synthesis

Structures and ribosomal interaction of ribosome inactivating proteins

Fungal ribotoxins: a review of potential biotechnological applications

Migration of 40 S ribosomal subunits on messenger RNA in the presence of edeine

Unidirectional constant rate motion of the ribosomal scanning particle during eukaryotic translation initiation

Some thoughts about translational reg ulation: forward and backward glances

Selective inhibition of protein synthesis in virus infected mammalian cells

Effect of MDMP on protein syn thesis in wheat and bacteria

Uncoupling stress granule assembly and translation initiation inhibition

Specific inhibition of peptide chain initiation by 2 (4 methyl 2,6 dinitroanili no) N methylpropionamide

MDMP action: degradative effects on polyribosomes from wheat roots and the inhibition of protein initiation

Ribosome structure, maturation of ribosomal RNA and drug sensitivity in tem perature sensitive mutants of Saccharomyces cerevisiae

Discovery and preliminary characteriza tion of translational modulators that impair the binding of eIF6 to 60S ribosomal subunits

2015) eIF6 anti association activity is required for ribosome bio genesis, translational control and tumor progression

An antimicrobial peptide that inhibits transla tion by trapping release factors on the ribosome

Mode of action of the antitumor compound girodazole (RP 49532A, NSC 627434)

Antitumor activity and mechanism of action of the marine compound girodazole

Phase I study of RP 49532A, a new pro tein synthesis inhibitor, in patients with advanced refrac tory solid tumors

Cancer syndromes and therapy by stop codon readthrough

A meta analysis of nonsense mutations causing human genetic disease

Therapeutics based on stop codon readthrough

Pharmaceutical therapies to recode nonsense mutations in inherited dis eases

New in vitro assay measuring direct inter action of nonsense suppressors with the eukaryotic protein synthesis machinery

Readthrough of premature termination codons in the ade nomatous polyposis coli gene restores its biological activi ty in human cancer cells

Aminoglycoside use in cystic fibrosis: therapeutic strategies and toxicity

Aminoglycoside induced transla tional read through in disease: overcoming nonsense mutations by pharmacogenetic therapy

Toward a rationale for the PTC124 (Ataluren) promoted readthrough of premature stop codons: a com putational approach and GFP reporter cell based assay

Efficacy and safety of ataluren in patients with nonsense mutation cys tic fibrosis not receiving chronic inhaled aminoglycosides: the international, randomized, double blind, placebo controlled Ataluren Confirmatory Trial in Cystic Fibrosis (ACT CF)

Ataluren in cystic fibrosis: development, clinical studies and where are we now?

Mechanism of PTC124 activity in cell based luciferase assays of nonsense codon suppression

Chemical induced read through at premature ter mination codons determined by a rapid dual fluorescence system based on S. cerevisiae

New negamycin based potent readthrough derivative effective against TGA type non sense mutations

Negamycin restores dystrophin expression in skeletal and cardiac muscles of mdx mice

Negamycin induces translational stalling and miscoding by binding to the small subunit head domain of the Escherichia coli ribosome

Novel small molecules potentiate premature termination codon readthrough by aminoglycosides

Ribosome recycling in mRNA translation, quality control, and homeostasis

Ribosome pausing, arrest and rescue in bacteria and eukaryotes

Post termination complex disassembly by ribosome recy cling factor, a functional tRNA mimic

Possible steps of complete disassembly of post termination complex by yeast eEF3 deduced from inhibition by translocation inhibitors

Ribosome recycling step in yeast cytoplasmic protein synthesis is catalyzed by eEF3 and ATP

Mechanism of fusidic acid inhibition of RRF and EF G dependent splitting of the bacterial post termination ribo some

Structural rationale for the cross resistance of tumor cells bearing the A399V variant of elongation factor eEF1A1 to the structurally unrelated didemnin B, ter natin, nannocystin A and ansatrienin B

Ternatin and improved synthetic vari ants kill cancer cells by targeting the elongation factor 1A ternary complex

Didemnins, tamandarins and related natural prod ucts

Mechanism of protein synthesis inhibition by didemnin B in vitro

Decoding mammalian ribosome mRNA states by translational GTPase complexes

Translation elongation factor eEF1A2 is a novel anticancer target for the marine natural product plitidepsin

Total synthesis and biological evaluation of taman darin B analogues

Inhibition of trans lation by cytotrienin A-a member of the ansamycin fam ily

Mycotrienin II, a translation inhibitor that prevents ICAM 1 expression induced by pro inflam matory cytokines

Nannocystin A: an elongation factor 1 inhibitor from Myxobacteria with differential anti cancer properties

Elongation factor 2 as a novel target for selective inhibition of fungal protein syn thesis

Sordarins: a new class of antifungals with selective inhibi tion of the protein synthesis elongation cycle in yeasts

The discovery of moriniafungin, a novel sor darin derivative produced by Morinia pestalozzioides

Antifungal activ ities and cytotoxicity studies of six new azasordarins

Two crystal structures demonstrate large conformational changes in the eukaryotic ribosomal translocase

Sordarin derivatives induce a novel conformation of the yeast ribosome translocation factor eEF2

Domain movements of elongation factor eEF2 and the eukaryotic 80S ribosome facilitate tRNA translocation

Fusidic acid: inhibi tion of factor T2 in reticulocyte protein synthesis

A chemical genomic screen in Saccharomyces cerevisiae reveals a role for diphthami dation of translation elongation factor 2 in inhibition of protein synthesis by sordarin

Stealth and mimicry by deadly bacterial tox ins

Bouvardin is a radiation modulator with a novel mechanism of action

The mode of action of the antitumor drug bouvardin, an inhibitor of protein synthesis in eukaryotic cells

Effect of the antibi otic purpuromycin on cell free protein synthesizing systems

A novel multiple stage anti malarial agent that inhibits protein synthesis

Translation factor eIF5A, modifica tion with hypusine and role in regulation of gene expres sion. eIF5A as a target for pharmacological interventions

EIF3 p170, a mediator of mimosine effect on protein synthesis and cell cycle pro gression

Small molecule inhibition of the inter action between the translation initiation factors eIF4E and eIF4G

Molecular mechanism of the dual activity of 4EGI 1: dissociating eIF4G from eIF4E but stabilizing the binding of unphosphorylated 4E BP1

Structure of the eukaryotic translation initiation factor eIF4E in complex with 4EGI 1 reveals an allosteric mechanism for dissociating eIF4G

Transcriptome wide studies uncover the diversity of modes of mRNA recruitment to eukaryot ic ribosomes

Reversing chemoresistance by small molecule inhi bition of the translation initiation complex eIF4F

Blocking eIF4E eIF4G interaction as a strategy to impair coronavirus replication

Cap dependent translation initiation factor, eIF4E, is the target for Ouabain mediated inhibition of HIF 1alpha

A large scale gene expression intensity based similarity metric ford repositioning, iScience

Cardiac glyco sides induce cell death in human cells by inhibiting gener al protein synthesis

Cardiac glycoside cerberin exerts anticancer activity through PI3K/AKT/mTOR sig nal transduction inhibition

Identification of cardiac glycosides as novel inhibitors of eIF4A1 mediated translation in triple negative breast cancer cells

Ribavirin suppresses eIF4E mediat ed oncogenic transformation by physical mimicry of the 7 methyl guanosine mRNA cap

The antiviral drug ribavirin does not mimic the 7 methylguanosine moiety of the mRNA cap structure in vitro

Ribavirin is not a functional mimic of the 7 methyl guanosine mRNA cap

Further evidence that ribavirin interacts with eIF4E

Ribavirin targets eIF4E dependent Akt survival signaling

Targeting the eIF4A RNA helicase as an anti neoplastic approach

A comparative study of small molecules targeting eIF4A

Hippuristanol -a potent steroid inhibitor of eukaryotic initiation factor 4A, Translation, 4, e1137381

Stimulation of mammalian translation initiation factor eIF4A activity by a small mole cule inhibitor of eukaryotic translation

Inhibition of eukaryotic translation initiation by the marine natural product pateamine A

The Translation inhibitor rocaglamide targets a bimolecular cavity between eIF4A and polypurine RNA

Antitumor activity and mechanism of action of the cyclopenta[b]benzofuran, sil vestrol

Rocaglates induce gain of func tion alterations to eIF4A and eIF4F

Second generation derivatives of the eukaryotic transla tion initiation inhibitor pateamine A targeting eIF4A as potential anticancer agents

ATP competitive, marine derived natural products that target the DEAD box heli case, eIF4A

Aurintricarboxylic acid: inhibitor of initiation of protein synthesis

Pyrocatechol violet: an inhibitor of initiation of protein synthesis

Fractionation and structural elucidation of the active com ponents of aurintricarboxylic acid, a potent inhibitor of protein nucleic acid interactions

Triphenylmethane dyes as inhibitors of reverse transcriptase, ribonucleic acid polymerase, and protein synthesis. Structure activity rela tionships

Aurintricarboxylic acid inhibition of the binding of phenylalanyl tRNAa to rat liver ribosomal subunits

Inhibition, by selected antibiotics, of protein synthesis in

Inhibitors of protein synthesis identified by a high throughput multiplexed translation screen

Eukaryotic translation initiation machinery can operate in a bacterial like mode without eIF2

Initiation of protein synthesis by hepatitis C virus is refractory to reduced eIF2.GTP.Met tRNA(i)(Met) ternary complex availability

A harmine derived beta carboline displays anti cancer effects in vitro by tar geting protein synthesis

Methionyl adenylate ana logues as inhibitors of methionyl tRNA synthetase

Methionine analogues as inhibitors of methionyl tRNA synthetase

Fluorinated tryptophans as substrates and inhibitors of the ATP-(32P)PPi exchange reaction catalysed by trypto phanyl tRNA synthetase

In silico discovery of aminoacyl tRNA synthetase inhibitors

Targeting adenylate forming enzymes with designed sul fonyladenosine inhibitors

Progress and chal lenges in aminoacyl tRNA synthetase based therapeutics

Molecular aspects of the in vivo and in vitro effects of ethionine, an analog of methionine

Structural basis for full spectrum inhibition of translation al functions on a tRNA synthetase

Ochratoxin a: general overview and actual molecular status

Halofuginone and other febrifugine derivatives inhibit prolyl tRNA synthetase

Halofuginone inhibits TH17 cell differentiation by activating the amino acid star vation response

Characterization of benzoxaborole based antifungal resistance mutations demonstrates that editing depends on electrostatic stabilization of the leucyl tRNA synthetase editing cap

Spirofungin A: stereoselective synthesis and inhibition of isoleucyl tRNA synthetase

Chemical modification of reveromycin A and its biological activities

Identification of Saccharomyces cerevisiae isoleucyl tRNA synthetase as a target of the G1 specific inhibitor Reveromycin A

Reveromycin A, an agent for osteoporosis, inhibits bone resorption by inducing apoptosis specifically in osteo clasts

Purpuromycin: an antibiotic inhibiting tRNA aminoacylation

Aminoacyl tRNA synthetase inhibitors as potent and synergistic immunosuppressants

Aminoacyl tRNA synthetase inhibition activates a pathway that branches from the canonical amino acid response in mammalian cells

Phosphorylation and signal transduc tion pathways in translational control

Regulation of mRNA translation by signaling pathways

The molecular basis of mTORC1 regulated translation

Signalling to eIF4E in cancer

Translation control of mRNAs encoding mammalian translation initi ation factors

TOP mRNPs: molecular mechanisms and principles of regula tion

Targeting mTOR for cancer therapy

Multifaceted deregulation of gene expression and protein synthesis with age

Protein syn thesis and quality control in aging

ATP competitive inhibitors of mTOR: an update

Direct inhibition of the signaling functions of the mammalian tar get of rapamycin by the phosphoinositide 3 kinase inhibitors, wortmannin and LY294002

Targeted profiling of RNA translation reveals mTOR 4EBP1/2 independent translation regulation of mRNAs encoding ribosomal proteins

The eIF2alpha kinases: their structures and func tions

Role of eIF2alpha kinases in translation al control and adaptation to cellular stress

Four translation initi ation pathways employed by the leaderless mRNA in eukaryotes

Small mole cule modulators of eukaryotic initiation factor 2alpha kinases, the key regulators of protein synthesis

Chemical genetics identify eIF2alpha kinase heme regulated inhibitor as an anticancer target

A novel specific PERK activator reduces toxicity and extends survival in Huntington's dis ease models

Mechanism based screen for G1/S checkpoint activators identifies a selective activa tor of EIF2AK3/PERK signalling

Translational coregulation of 5′TOP mRNAs by TIA 1 and TIAR

) eIF2alpha phosphorylation bidi rectionally regulates the switch from short to long term synaptic plasticity and memory

A selective inhibitor of eIF2alpha dephosphorylation protects cells from ER stress

Activation of eukaryotic initiation factor 2 alpha kinases in okadaic acid treated neurons

The translation initi ation factor eIF2beta is an interactor of protein phos phatase 1

Serine threonine protein phos phatases: Lost in translation

Pharmacolog ical brake release of mRNA translation enhances cognitive memory

Small molecule ISRIB suppresses the integrated stress response within a defined window of activation

Benzyl 3 cetyl 2 methylimidazoli um iodide (NH125) induces phosphorylation of eukaryot ic elongation factor 2 (eEF2): a cautionary note on the anticancer mechanism of an eEF2 kinase inhibitor

Pharmacological eEF2K activation promotes cell death and inhibits cancer progression

Investigating the kinetic mechanism of inhibition of elongation factor 2 kinase by NH125: evidence of a common in vitro artifact

Eukaryotic elongation factor 2 kinase a pharmacological target to regulate protein translation dysfunction in neuro logical diseases

Activation of AMPK and its impact on exercise capacity

Direct and indirect activation of eukaryotic elongation factor 2 kinase by AMP activated protein kinase

Detection and degradation of stalled nascent chains via ribosome associ ated quality control

Ribotoxic stress response: activation of the stress activated protein kinase JNK1 by inhibitors of the peptidyl trans ferase reaction and by sequence specific RNA damage to the alpha sarcin/ricin loop in the 28S rRNA

Trichothecene mycotoxins trigger a ribotoxic stress response that activates c Jun N terminal kinase and p38 mitogen activated pro tein kinase and induces apoptosis

Targets and intracellular signaling mechanisms for deoxynivalenol induced ribosomal RNA cleavage

Mechanisms for ribotoxin induced ribosomal RNA cleavage

Apoptosis induction by the satratoxins and other trichothecene mycotoxins: relationship to ERK, p38 MAPK, and SAPK/JNK activation

Comparative induction of 28S ribosomal RNA cleavage by ricin and the tri chothecenes deoxynivalenol and T 2 toxin in the macrophage

Induction of a ribotoxic stress response that stimulates stress activated protein kinases by 13 deoxytedanolide, an antitumor marine macrolide

ZAKalpha recog nizes stalled ribosomes through partially redundant sensor domains

Cytotrienin A, a translation inhibitor that induces ectodomain shedding of TNF receptor 1 via activation of ERK and p38 MAP kinase

A novel role of cytosolic protein synthe sis inhibition in aminoglycoside ototoxicity

ZAK: a MAP3Kinase that transduces Shiga toxin and ricin induced proinflammatory cytokine expression

Complete inhibition of anisomycin and UV radia tion but not cytokine induced JNK and p38 activation by an aryl substituted dihydropyrrolopyrazole quinoline and mixed lineage kinase 7 small interfering RNA

ZAK is required for doxorubicin, a novel ribotoxic stressor, to induce SAPK activation and apopto sis in HaCaT cells

The dawn of the age of amino acid sensors for the mTORC1 pathway

Targeting the trans lation machinery in cancer

Targeting the human 80S ribosome in cancer: from structure to function and drug design for innovative adjuvant therapeutic strategies

Techniques for screening translation inhibitors

Identification of novel antibacterials using machine learning techniques

Probing translation with small molecule inhibitors

Acknowledgments. The authors are grateful to

Microbiol., 72, 185 207