key: cord-0332213-6z0jy0gr
authors: McNamara Manning, Katherine; Bahlai, Christie A.
title: Experimental calibration of trapping methods for addressing bias in arthropod biodiversity monitoring
date: 2021-12-07
journal: bioRxiv
DOI: 10.1101/2021.12.06.471448
sha: 252f58f753ec669ccfa2767cb1b4b70cbccb5b07
doc_id: 332213
cord_uid: 6z0jy0gr

All approaches to biodiversity monitoring have inherent biases in the taxa captured, yet, as environments, sampling goals, and conventions vary, it is not uncommon for sampling approaches to be customized to reflect the study objectives, optimizing findings to be locally relevant but at the cost of transferability. Here, we developed a calibration study to directly examine how researcher trap choice affects observations made in insect biodiversity sampling. Sampling efficiency of four types of traps: pitfalls, yellow ramp traps, a novel jar ramp trap, and yellow sticky cards, were compared with respect to an array of biodiversity metrics associated with the arthropods they captured. We found that trapping efficiency and functional groups of arthropods (flying versus ground-crawling) varied by trap type. Pitfalls and jar ramp traps performed similarly for all biodiversity metrics measured, suggesting that jar ramp traps provide a more comparable measurement of ground-crawling arthropod communities to pitfall sampling than the yellow ramp traps and should be considered when pitfall sampling cannot be used. This study illustrates the implications for biodiversity sampling of arthropods in environments with physical constraints on trapping, and the importance of directly comparing adapted methods to established sampling protocol. Future biodiversity monitoring schemes should conduct calibration experiments to provide important information on performance and potential limitations of sampling methodology.

Pitfall traps are commonly and widely used to sample ground-dwelling invertebrates [49, 50] . There is no standard material used across monitoring programs [51] , but plastic cups are most widely used to form a 'pit' placed in the ground that crawling arthropods fall into and cannot escape from [51, 52] . In a review of methodology used in arthropod abundance studies, it was found that pitfall traps were used in just under 30% of manuscripts surveyed, and was thus the single most common trap type, however most studies did not describe the specific details of the container used [51] . There is also no standard size of pitfall trap [51] , yet previous work has shown that trap circumference impacts the identity and frequency of insects captured, with smaller diameter traps collecting the most dominant taxa, with less bycatch and processing time than larger traps [53] . Typically, designs use a container that is dug into the ground so that the opening of it is flush with, or just below, the ground's surface, usually with a killing or preserving liquid in the container and sometimes with a roof over top to prevent rainfall from spilling the trap contents. In addition to trap structure affecting captures, trapping efficiency of pitfalls can be impacted by habitat around the trap, with more open habitat structure significantly increasing species richness and composition observed [54] . Pitfalls used in the present study were a 100 ml transparent plastic specimen container, 7.5 cm in height with a 4.5 cm diameter opening, filled with soapy water (Dawn Original Liquid Dish Soap) (using similar methodology to Cates et al., 2021; Sultaire et al., 2021; Wills et al., 2019 ). An orange marking flag was placed next to sampling stations so that traps could be located within the vegetation (Figure 1b) .

Yellow sticky cards, or glue traps, are a very commonly used methodology for sampling flying populations of insects, especially in agricultural ecology [58] [59] [60] [61] [62] [63] . However, this trapping method is biased by several factors affecting their trapping efficiency. For example, Musser et al. [64] found that yellow sticky cards were more attractive to certain predators of sweet corn, advising that they were unreliable to get an accurate estimate of Coccinellidae populations, and captured few of the smaller insects (i.e. Orius insidiosus) and larvae often captured by other methods. The wavelength of light reflected due to their colour may make them attractive to flying beneficial and pest insects, making them not truly a passive sampling method [65, 66] . Yellow sticky cards (IPM Corn Rootworm Traps, Great Lakes IPM Inc.) were used in our previous study in thin-soil environments and incorporated here to compare the three ground-crawling arthropod trapping methods to a flying trap. Yellow sticky cards (cut in half to limit disturbance by wind, 11x14 cm) were affixed to wire stands, positioning the top of the card approximately 30 cm off the ground (Figure 1d ).

Ramp traps are an alternative method to sample the ground community without disturbing the substrate as would be done with a pitfall trap [19, 42, 43] . Our previous study required their use as our sites had soil that could not be disturbed for conservation or structural reasons. In our companion study, we selected these traps because they were commercially available, which we reasoned would allow us to apply their use more consistently and provide more comparable results to other studies compared to those using homemade trapping methods. These commercial traps sold by ChemTica Internacional were advertised as "excellent for ground crawling insects". Most studies that used these traps focused on pest weevils and some employed a pheromone as bait (Oehlschlager et al., 2002; Reddy et al., 2008; Reddy et al., 2009 ). Yet, per our observations in our previous study, captures in these traps were dominated by flying arthropods and were missing characteristic ground arthropods (i.e. ground beetles). Their bright yellow colour may result in a similar attractiveness to flying insects as observed for yellow sticky cards [65, 66] . The yellow ramp traps are square yellow plastic containers (14 x 14 x 13 cm) with a roof and detachable ramps (30% slope) on four sides, placed on the ground's surface and filled with soapy water. We also added a small sandbag (sand inside quart zipper bag) on top to minimize movement of the trap in windy conditions (Figure 1a ). In field tests of these commercial ramp traps during a previous study, project personnel noted that these traps were lightweight but cumbersome: traps had to be secured to the substrate to limit disruption by wind, but also samples had to be placed into a separate container for transport back to the laboratory. Furthermore, our group noted a possible trapping bias: these traps were sampling a large number of flying arthropods, and fewer-than-expected ground dwelling arthropods.

To address the apparent failure of the commercial ramp traps to capture ground-dwelling taxa, we developed an alternative trapping approach. These novel "jar ramp traps" were designed to address the structural issues associated with the commercial trap while improving the sample handling experience. The "ramps" were constructed of fine mesh at a low sloping angle attached to the rim of an open, shallow clear glass jar (Ball, 236 ml, 7.5 cm diameter, 5 cm height) filled with soapy water, using rocks to blend the mesh in with the ground and secure it from blowing ( Figure 1c ). In contrast to the commercial ramp trap, the ramps on jar ramp traps were at a lower angle and made of an easily gripped material (fine mesh versus smooth plastic). Additionally, the trap's design improves handling in the field, utilizing a plastic lid to seal the jar until sampling processing, upon removal of the mesh ramp.

We selected mown horticultural grasslands for this study because in our previous study, our trapping focused on sites with low vegetation; they have also have abiotic attributes akin to the thin-soil sites from our previous study, exposed to solar radiation and wind, but with deeper soils to accommodate the use of pitfalls in the comparison. We located and obtained permissions for three sites in Northeast Ohio in the City of Kent, owned by Kent State University, and operated by the Kent State University Center for Ecology and Natural Resource Sustainability. At each site, we used pitfalls, yellow ramp traps, jar ramp traps, and yellow sticky cards for sampling arthropods. Two of each trap type were placed at each site for 48 hours during a period of warm, dry weather every other week during the months of July, August, and September 2020, amounting to seven sampling periods and 21 location-date replicates in total.

At the end of the 48-hour exposure traps were collected. Yellow sticky cards were placed directly into gallon plastic zipper bags, yellow ramp traps strained with a fine mesh and solid contents suspended in ethanol in bags, and jar ramp traps and pitfalls had plastic lids secured on the glass jar or plastic container, respectively. Samples were processed in the laboratory and specimens were identified with the aid of a dissecting microscope. For the duration of the study, yellow sticky cards were stored in the freezer and all other samples in vials with 70% ethanol.

Specimens were identified mostly to family or order following the Higher Taxon Approach, also known as taxonomic sufficiency [70, 71] . This lower resolution is taxonomically sufficient to describe and compare broader trends in community composition and biodiversity between sites under limited resource biodiversity monitoring schemes [70, 72] .

All statistical analyses were completed using R 4.1.0 [73]. To characterize the insect communities collected by each of the four trap types, we used non-metric multidimensional scaling (NMDS, with Bray-Curtis distance), computed using functions in the vegan 2.5-7 package [74] . A PERMANOVA was performed following the NMDS to assess differences between trap types. Accumulation curves for each trap type were created using the function BiodiversityR package [75] . To estimate sampling efficiency for each trap type we used nonparametric Jackknife order 1 and 2 estimators to compare observed and estimated richness. Linear mixed effects models were used to examine arthropod abundance, richness, diversity, and evenness between trap types, sampling dates, and sites using the lme4 [76] and lmerTest [77] packages. The global model took the form: Response variable ~ Trap + Date + (1|Site), then Akaike's Information Criterion was used to select the best model structure for each response variable. We also performed a functional group analysis in which specimens were classified into groups of ground-crawling, flying, or neither to assess differences in abundance and richness by trap type based on this functional classification using linear models with the form: Response variable ~ Trap. Pairwise comparisons were performed using the emmeans 1.6.2-1 package [78] for both the linear mixed effects and linear models.

Seven sampling periods at our three sites yielded 165 samples (accounting for three pitfalls lost to disturbance by mammal excavation), which contained a total of 13,663 arthropod specimens. Trapping efficiency varied by trap type: overall, yellow ramp traps caught the greatest number of individuals (7,771); followed by sticky cards (4, 199) ; then jar ramp traps (1108); with pitfalls catching the least (585). The capture of functional groups of arthropods (flying versus ground-crawling) and individual taxonomic groups varied by trap type.

Community composition varied by trap type (p = 0.001, Figure 2 ). Overall differences in richness, abundance, Shannon diversity, and evenness were observed between the trap types (p <0.0001), as well as variation by date for richness and abundance (p <0.0001) in linear mixed effect models (Figure 3 ). For all biodiversity metrics examined, pitfalls and jar ramp traps performed similarly. Pairwise comparisons indicated differences in richness and abundance between all trap types except for jar ramp traps and pitfalls. Similarly, differences in Shannon diversity between all trap comparisons except for jar ramp traps and pitfalls, and jar ramp traps and yellow sticky cards were observed. Finally, the evenness between trap types was different except for between jar ramp traps and pitfalls, jar ramp traps and yellow ramp traps, and yellow ramp traps and sticky cards.

When arthropod abundance and richness in each trap type was compared by guild (flying or groundcrawling) (Figure 4) , we observed differences in the abundance of flying arthropods caught between all trap types except for the jar ramp traps and the pitfalls. The richness of flying arthropods caught by trap types was different except for between jar ramp traps and pitfalls, and yellow ramp traps and sticky cards. The abundance of ground-crawling arthropods differed between all trap types except the jar ramp traps and pitfalls, and pitfalls and yellow sticky cards. The richness of ground-crawling arthropods was different between all trap combinations except the jar ramp traps and pitfalls.

The total richness in all traps was 49 unique taxa; jar ramp traps caught 32 taxa, pitfalls caught 27, yellow ramp traps caught 43, and yellow sticky cards caught 36 ( Figure 5 ). When compared with richness estimations from Jackknife (orders 1 and 2) jar ramp trap efficiency was 80% (1)/76% (2); pitfall trap efficiency was 82% (1 and 2); yellow ramp trap efficiency was 81% (1)/71% (2); and yellow sticky card efficiency was 84% (1)/77% (2) . Together all traps captured an estimated 88% (1)/85% (2) of taxonomic richness possible.

Many previous authors have noted that the biodiversity trends observed in a monitoring scheme are highly sensitive to sampling methodology [26, 40, [79] [80] [81] [82] [83] [84] . For example, in a European bumble bee survey the three methods used all produced different estimates of the population [79] . The results of the present study are no exception: even within methods designed to sample the same part of the same environment, communities captured by traps differ. Yet, even with limited overlap in community captured by each trap type, several biodiversity metrics were relatively similar across the trapping types. In our study, the jar ramp trap catch was nearly identical to the pitfall community. The yellow sticky cards had low community overlap with other trap types tested in this study, which was expected because they are designed to capture flying insects, but the yellow ramp trap captured a community somewhere intermediate of the pitfall and the yellow sticky card. The yellow ramp trap captured a higher abundance, richness, and Shannon diversity than the jar ramp trap or pitfall, but these numbers may be misleading, as the trap was designed to sample ground arthropods, and thus may not be an authentic measurement of function in ground-dwelling communities when it is catching the flying community as well. Traps capturing a higher number of non-target arthropods may obscure biodiversity trends associated with a study's goals. For instance, in a native bee survey in an agroecosystem in Pennsylvania, blue vane traps captured the greatest richness and abundance, however, they were trapping higher ratios of common bees to rare bees compared to the pan traps used in the study [26] .

We found no differences between jar ramp traps and pitfalls for any of the biodiversity metrics, suggesting these two traps had very similar performance when deployed in the environment. Taken with results of the community composition analysis, it would appear that jar ramp traps provide a more comparable measurement of ground-dwelling arthropod communities to pitfall sampling and should be considered when pitfall sampling cannot be used. However, our study also demonstrates that, more generally, if traps adapted for specific environments are indicated for a particular study, they should be examined relative to other traps is a more neutral environment to contextualize their trapping patterns. Despite being adapted for use on surfaces that could not be disturbed and targeting crawling arthropods, we found that the yellow ramp traps captured a community that was quite unlike that captured in pitfalls.

Our findings highlight the contextual dependence of insect sampling methodologies. Although the commercial yellow ramp traps were designed to collect ground-crawling arthropods, these traps were often used in conjunction with a chemical lure (most commonly to target large pest weevil species). This suggests that the biology and behaviour of target taxa were able to overcome the structural issues that these traps presented to other arthropods when used in the context of passive trapping. Despite its importance to environmental management, developing standards for biodiversity monitoring comes with many challenges. Between idiosyncratic biology of target taxa and habitat effects on trapping efficiency, and indeed, trap structure, it becomes essential to 'calibrate' modifications in trapping methodology against standards to ensure transferability of data.

In our study, all trap types had an estimated sampling efficiency of at least 80% under the conditions tested. All trapping methods combined caught an estimated 85% -88% of the taxa present in the community based on species accumulation curves. The observed sampling efficiency is similar to that found in other studies of this type: a ground beetle study in nearby Cleveland, Ohio found that their unbaited pitfall traps collected 69% of the estimated species richness in one year of study and 66% the next [85] . In a sandfly trapping comparison study in Mexico, Jackknife order 2 estimates predicted 85% of taxa were found between all trap types [86] .

Carabid beetles are a key focus of research performed in our group because they are important bioindicators, sensitive to habitat changes [45] [46] [47] and thus were a target taxon in our companion study of the functional dynamics of insects in thin soils. Yet, in a preliminary study using the yellow ramp traps as our primary means of collecting ground-dwelling arthropods, our group observed one individual, and had initially concluded that these indicators were rare at our sample sites, leading to conservation concern. The increase in Carabidae caught in the present study compared to our previous could be due to increasing sampling effort targeting ground-crawling arthropods, use of traps that were more effective for trapping these taxa, or the difference in habitat. Six specimens of Carabidae were collected during this experiment. We identified these to species (det. K.I. Perry, personal communication) to establish which species were collected by the different trap types and to gain insight into their particular characteristics, behaviours, or habitat preferences that potentially led to their trapping. Three species were collected in this experiment: Cinindelidia punctulata, Cratacanthus dubius, and Harpalus fanus. C. punctulata and H. fanus have macropterous (large/long) wings, associated with greater dispersal ability as it renders them capable of flight [44] . C. dubius is wingdimorphic, meaning they can be either macropterous or brachypterous (reduced wings, incapable of flight) [87] . Interestingly, each ground-crawling trapping method caught a different species: pitfall traps caught all three H. fanus; a yellow ramp trap caught the one C. dubius; and jar ramp traps caught the two C. punctulata.

This study illustrates the implications for biodiversity sampling of arthropods in environments with physical constraints on trapping, and the importance of directly comparing adapted methods to established sampling protocol. This study leverages a relatively uniform environment and accessible sites to demonstrate that such calibrations can be relatively small scale and be designed to be completed with limited labour: indeed, the experimental work for this study was completed on a university campus when travel and support labour was highly limited by the COVID-19 lockdown. However, we clearly demonstrate the importance of contextualizing studies designed for particular environments.

It is not uncommon for biodiversity monitoring to occur in sensitive habitats with unique constraints, requiring customized approaches to monitoring. However, these modifications to standardized trapping methods limit the comparability of study findings. In these cases, we recommend "calibration" approaches be taken, where novel designs or methods unfamiliar to a given system are tested in direct comparison with established methods. Conducting a calibration of those methods can provide important contextual information on how that method performs, and its potential limitations in monitoring protocol. Future biodiversity monitoring schemes, especially those occurring in sensitive or unusual habitats, should conduct calibration experiments to maximize the chances of capturing target taxa, while minimizing disturbance to their habitat and thus, activity patterns of taxa, as well as fostering future ecological synthesis. Alt text: Pictures of four insect traps in mowed grasslands. Clockwise from top left: yellow ramp trap, square yellow plastic container with yellow plastic ramps on four sides, Ziplock bag with sand sits on top; pitfall trap, small plastic container sits flush with grassy ground, orange marking flag sits next to it, off the ground; yellow sticky card, square yellow card with a green lined grid attached to a wire stand in the grassy ground; jar ramp trap, aerial view shows a shallow glass jar with mesh attached to the rim, tan-colored rocks sit on the border of the mesh and the grass. Alt text: On the left an orange ellipsoid represents the pitfall community, a green ellipsoid overlaps with the right side of the orange ellipsoid and represents the jar ramp trap community. To the right of that and overlapping some with the right sides of the orange and green ellipsoids, is a yellow ellipsoid representing the yellow ramp trap community, which sits just above a pink ellipsoid representing the yellow sticky card community. Select taxa is overlain in boxes. Flying guild taxa (Syrphidae, Chalcidoidea, and Ichneumonoidea) is displayed by white text on a black background and ground-crawling guild taxa (Staphylinidae, Collembola, Araneae, Formicidae, and Carabidae) is displayed by black text on a white background. Flying guild taxa are situated on the right, over the yellow and pink ellipsoids. Ground-crawling taxa are towards the middle-left, over the yellow, green and orange ellipsoids. Alt text: Four (4) box plots representing flying and ground-crawling arthropod abundance and richness by trap type. Top left shows flying abundance, top right shows ground-crawling abundance, bottom left shows flying richness, and bottom right shows ground-crawling richness. Left to right of each box plot: jar traps displayed in green, pitfall traps displayed in orange, yellow ramp traps displayed in yellow, and yellow sticky cards displayed in pink. Figure 5 : Taxon richness accumulation curves for each trap type. Total richness in all traps was 49 unique taxa; jar ramp traps -32, pitfalls -27, yellow ramp traps -43, yellow sticky cards -36. Alt text: Number of samples (0 to 40) on the x-axis, Richness (0 to 40) on the y-axis. Four curved lines increase in richness as the number of samples increase, until they begin to level off as an asymptote is approached. A line with green circles represents jar ramp traps; orange north-pointing filled in triangles represent pitfall traps; yellow squares represent yellow ramp traps; and pink non-filled south-pointing triangles represent yellow sticky cards.

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We have no competing interests.

KMM contributed to experimental conception and design, acquisition of data, sample processing, data analysis, and drafting the article. CB contributed to experimental conception and design, data analysis, and critical revisions of the article.