key: cord-0311952-33y7kg7h authors: Vignals, C.; Dick, D. W.; Thiebaut, R.; Wittkop, L.; Prague, M.; Heffernan, J. M. title: Barrier gesture relaxation during vaccination campaign in France: modelling impact of waning immunity date: 2021-08-30 journal: nan DOI: 10.1101/2021.08.29.21262788 sha: 2540f0b378ad453d1bd0a4b6e3cc8b5aa0997824 doc_id: 311952 cord_uid: 33y7kg7h Non-pharmaceutical interventions have been implemented intermittently for more than a year in most countries of the world to mitigate COVID-19 epidemic. In France, while the vaccination campaign is progressing, the French government has decided to remove many public health restrictions such as business closure, lockdowns and curfews. Nonetheless, social distancing, mask wearing, and hand washing (also called barrier gestures) are still recommended. We utilize an age-structured compartmental SEIR model that takes into account SARS-CoV-2 waning immunity, vaccination, and increased transmissibility from variants of concern, to estimate if barrier gestures can be relaxed without causing a resurgence of severe infections. This model assumes that susceptibility to infection is a function of immunity status, which depends on initial infection severity and vaccination status. It is calibrated on confirmed COVID-19 cases from the French surveillance database, and accounts for changes in contact behaviors due to implementation of nation-wide public health policies. We study partial and full relaxation of barrier gestures occurring from August to December 2021 under various immunity duration assumptions. Maintaining application of barrier gestures appears essential to avoid a resurgence of severe infections that would exceed health care capacities, while surmounting vaccine hesitancy represents the key to consider their relaxation. Immunity duration assumptions significantly influence the short-term dynamic of the epidemic which should be considered for further modelling. Causing more than 200 million infections and at least 4.4 million deaths worldwide, the COVID-19 epidemic is a global health, economic, and social crisis. The causative agent, SARS-CoV-2, emerged in China's Hubei province in December 2019. Various non-pharmaceutical measures, in particular lockdown and social distancing, have been implemented around the world to effectively control the spread of the virus 1 2 . Nevertheless, all of these measures have negative economic and social consequences, as well as repercussions on the mental health of populations. Considerable efforts in vaccine research have resulted in the development of several effective vaccines against COVID-19 in a few months. As of August 4 th , 2021, more than 3,8 billion doses of vaccine have been administered worldwide 3 . Numerous studies have used compartmental models to either estimate the parameters of the epidemic dynamics 4 5 , measure the impact of social distancing 6 7 8 or evaluate different vaccine strategies 9 . Many of these studies assumed that immunity acquired after an infection was definitive. Indeed, it has been shown that immunity acquired after a first infection protects against reinfection for at least 6 months 10 11 . Nevertheless, several immunological studies have shown that, following natural infection, the anti-SARS-CoV2 antibody titer declines over time 12 13 14 15 even though it remains detectable in more than 90% of cases at 7 months 14 . A study suggests that anti-SARS-CoV-2 CD4+ and CD8+ specific T cells decline with a half-life of 3 to 5 months 15 , while another study found that they were maintained 10 months post-infection 16 . With regard to other coronaviruses, reinfections are frequent in the year following a seasonal coronavirus infection (common cold) 17 , while immunity appears to be prolonged after infection with SARS-CoV or MERS 18 19 20 . Concerning vaccination, a significant trend of anti-SARS-CoV2 antibodies declining have been demonstrated with both BNT162b2 and ChAdOx1 nCoV-19 21 . The latest study endpoint of the BNT162b2 clinical trial suggests that vaccine efficacy against symptomatic infections may decline over time 22 . However, to date the exact duration of the protection anti-SARS-CoV-2 conferred by an infection or by vaccination remains unknown. As the epidemic has lasted for more than a year, it seems necessary to take this parameter into account to modelling the epidemic. Indeed, several studies have shown that the future evolution of the epidemic would depend on the duration of immunity, from extinction after a large epidemic wave to the transition to an endemic mode 23 24 25 26 . The French government, as many other, has successively implemented many restrictions in order to mitigate the epidemic, such as travel restrictions, lockdowns, curfews, obligation to work from home, closure of bars, restaurants, cinemas or schools. In addition to these measures, barrier gestures have been promoted. These barrier gestures include mask wearing, washing hands regularly, using a single-use disposable tissues, keeping a distance of at least 2 meters between individuals and avoiding gatherings of more than 6 peoples, with the aim to reducing human-to-human viral transmission. Four vaccines are currently licensed in France, two messenger RNA vaccines (BNT162b2 and mRNA-1273), and two viral vector vaccines (ChAdOx1 nCoV-19 and Ad26.COV2.S). The vaccination campaign began on January 2021, targeting first the elderly and the subpopulation with comorbidities at risk for severe COVID-19. The program was then progressively extended to entire adult population over a few months, and then to children over 12 years old. As of August 17 th , 2021, 69.5% of the French population have received at least one dose of vaccine and 59.3% have completed the vaccination schedule 27 . A French modelling study estimated that it would be necessary to vaccinate 90% of individuals over 65 years old and 89% of the 18-64 year old's before all social distancing measures could be relaxed 28 . This study assumes that immunity does not wane over time, which could lead to an underestimation of these thresholds. In addition, Europe is facing the breakthrough of the delta variant of concern, which has been estimated to be 1.97 times more transmissible than the historical strain, and is predicted to represent 90% of COVID-19 cases in August 2021 29 . However, the vaccine coverage reached at the end of the vaccination campaign is uncertain. A survey conducted among the French population estimates that 16% of adults do not want to be vaccinated and that only 74% of parents would agree to have their child under 17 vaccinated 30 . Finally, because immune responses following vaccination are lower in the elderly 31 , a booster campaign for this population is being considered by the authorities. While the vaccine rollout is progressing, the French government has removed public health restrictions, but the application of barrier gestures is recommended 32 . In this study, we aim to estimate the consequences of a barrier gesture relaxation on the evolution of the epidemic in France, taking into account vaccination, the emergence of variants of concern, in particular, the delta variant, and waning immunity. In addition, we aim to investigate in a preliminary analysis the impact of a booster vaccine campaign for the elderly. We used a compartmental age-structured model of COVID-19 infection previously developed by Childs et al. 33 which is adapted from a model of vaccination and waning immunity applied to pertussis 34 . A flow diagram of the model is shown in Figure 1 for a single age group. The model is based on a Susceptible-Exposed-Infected-Vaccinated-Susceptible model structure (SEIVS) with age structure (i.e., groups 0-4, 5-9, ..., 75+ years). As in Childs et al. 33 , we use Sim , E k jm , Ijm , and V l im to denote the number of susceptible, exposed, infectious and vaccinated individuals in each age group m (1 ≤ m ≤ 16), where i (1 ≤ i ≤ 4) denotes immune status, j (2 ≤ j ≤ 4) denotes symptom severity, k (1 ≤ k ≤ 3) represents stages in the exposed class, and l (1 ≤ l ≤ 2) denotes the number of vaccine doses that individuals have received. Figure 1 . Schematic of the age-structured SEIVS model for one age group, derived from Childs et al. 33 A full description of the model is available in Childs et al. 33 . Briefly, the base model consists of an immune continuum, distinguishing four states of susceptibility (fully susceptible (S1), somewhat immune (S2), moderately immune (S3), and fully resistant to infection (S4)), three infectious states with mild (I2), moderate (I3), and severe (I4) symptoms (i.e., infections requiring at least one medical consultation), and three infected but not-yet-infectious states (E k j, j= 2,3,4, k= 1,2,3). It is assumed that individuals of higher immune status are less susceptible to infection than those of lower status. Comorbidity statuses by age 35 determine the probability of mild, moderate, and severe symptoms for each age group. Immunity develops after infection. It is assumed that people with mild, moderate, and severe symptoms move to immune classes S2, S3 and S4, respectively, upon recovery (i.e., the severity of symptoms is proportional to neutralizing immunity development 14 36 37 38 ). Vaccination is implemented into the model using a two-dose structure, where compartments V 1 i and V 2 i denote those with one and two doses, respectively, where i is the level of susceptibility. It is assumed that two doses of vaccine, or one dose of vaccine administered to individuals in immune states S3 and S4, provide the same level of immunity or protection from infection as S4; i.e., fully resistance to infection. Additionally, it is assumed that one dose of vaccine given to individuals in S1 and S2 provides protection similar to states S2 and S3, respectively, where protective efficacies against infection and/or severe disease decrease with a lower level of immunity. Finally, it is assumed that immunity gained from infection or vaccination wanes over time ( Figure 1 , black lines). Detailed descriptions of the equations are provided in appendix A. Parameter values and references are provided in Table 1 . Susceptibility is assumed to decrease with increasing immunity, but does not depend on age. Thus, susceptibility α of an individual somewhat immune (S2) or moderately immune (S3) correspond respectively to 1/3 and 2/3 of that of an individual fully susceptible (S1). Infectivity (β) is assumed to vary by severity of disease and is chosen to produce a basic reproduction number, R0, equal to 2.9 using the Next Generation Matrix method 4 48 . By immunity status, we assume that the infectivity of individuals with mild (I2) or severe (I4) infections is 0.5 and 0.1 times the infectivity of moderate infections (I3). Indeed, people with milder symptoms are expected to have lower infectivity 39 . Simultaneously, more severe disease outcomes are expected to induce behavioural changes, such as limiting mobility, that lower infectivity. Infectivity is considered in the calculation of the infection force λ, which takes into account the average number of contacts between age classes and the proportion of the population infected and infectious (Appendix A -Model equations). Susceptible individuals Si, upon infection, move to the mild, moderate, and severe symptom classes with probabilities p j im for each age group m and each immune status. These probabilities are determined by the prevalence of zero, one, and two or more co-morbidities that increase the risk of severe COVID-19 disease within each age group, informed by 35 . p j 1m is directly derived from these prevalences, whereas p j 2m and p j 3m are modified in order to assume that people in the S2 and S3 compartments are, respectively, 70% protected and fully protected against moving to the severe disease class I4 (Table S2 ). The incubation period lasts on average 4.5 days, therefore, it is assumed that the progression rates through the pre-infectious period κ is equal to 1/1.5. The contagious period is estimated to last 7 to 8 days 41 49 50 and depends on symptom severity, with milder disease associated with shorter infectious periods 51 52 . Thus, we assumed that the recovery rate is respectively equal to 1/5, 1/10 and 1/15 for mild (I2), moderate (I3) and severe infections (I4). Given the short period considered, we assume the absence of natality, mortality and aging. Finally, we assume that immunity lasts on average 3 years between successive stages, which means that it takes 9 years to pass from a fully resistant to a fully susceptible compartment. For vaccinated classes, we assume that immunity in V 1 1 wanes to S1, that in V 1 2 wanes to S2, and that of all other vaccinated classes wanes to S3. Vaccination is implemented from 01/01/2021 and takes into account the different age groups that are successively eligible in France, starting from the elderly first (Table S3 ). In order to take into account vaccine hesitancy, we assume that 10% of the over-75s, 20% of the years old and 30% of the [10-19] years old will not be vaccinated 30 . We determine the first dose vaccination rate σ 1 i given the desired coverage at the end of each month of the vaccination program. From January to June 2021, the monthly coverage is derived from the VAC-SI (Système d'Informations pour le suivi de la VACcination) database (Table S4 ). From July, we assume that 15 million doses (including first and second doses) will be administrated each month, which corresponds to the average distribution in the previous 3 months. Monthly coverage is scaled to a daily rate accounting for the portion of the population in the current vaccine-eligible age groups in each eligible compartment (S1, S2, S3 and S4). Individuals receive a second dose 28 days after the first one and acquire immunity immediately. Vaccine efficacy against all infections is assumed to be 50% after 1 dose and 80% after 2 doses. Vaccine efficacy against severe infections is assumed to be 70% after 1 dose. Given the model architecture, the efficacy against severe infections after 2 doses is equal to the efficacy against all infections after 2 doses. In order to take into account the emergence of the variants of concern (alpha, beta, gamma and delta), we use the SI-DEP database (Système d'Informations de DEPistage), which provides information about the distribution of these variants among all confirmed COVID-19 cases over time ( Figures S1 and S2 ). For the delta variant, we assume that it will represent 90% of the reported cases at the end of August 2021 29 . We assume that alpha-beta-gamma variants and the delta variant are, respectively, 50% 53 54 and 97% 55 more transmissible than the historical strain. All rights reserved. No reuse allowed without permission. perpetuity. preprint (which was not certified by peer review) is the author/funder, who has granted medRxiv a license to display the preprint in Age-specific daily contacts for the French population are obtained from pre-pandemic estimations 40 . The model incorporates in the contact-rates, cma, the governmental measures taken to mitigate the epidemic, such as lockdowns, curfews, closing schools, business, bars and restaurants or work from home. The schedule of these governmental measures is available at https://www.gouvernement.fr/info-coronavirus/les-actions-du-gouvernement. Specific modifications to the contact matrices are provided in the Supplementary Material (Tables S5 to S8 ). The model is calibrated using daily reported COVID-19 cases from the SI-DEP database, from 13/05/2020 to 01/07/2021. SI-DEP is the French surveillance system that gathers all COVID-19 infections confirmed by Polymerase Chain Reaction or antigenic test at the national level. We assume that reported COVID-19 cases correspond to all severe cases (I4) and 3/5ths of the moderate cases (I3). The k-value is the only model parameter that is fit to COVID-19 data and reflects the population compliance to barrier gestures. Given that climatic conditions are not implemented in the model, the kvalue also captures part of the influence of the climate on the transmission 56 . This parameter lies between 0 and 1 (1 being pre-pandemic value; i.e., no barrier gesture application), and it linearly scales contact-rates from the contact matrices. Thus, the force of infection λim depends on the k-value (Appendix A). After August 1 st , 2021, we formulate different hypotheses for the relaxation of barrier gestures, based on the evolution of the k-value. The baseline scenario corresponds to no relaxation. For this scenario, we chose to set the k-value for July-August 2021 to those estimated during the same period in the previous year, assuming that barrier gestures will be applied at the same level. After August 2021, we maintain the k-value at this level, until it is modified to reflect a relaxation scenario. Different scenarios of barrier gesture relaxation are formulated according to the timing of the relaxation (August, September, October, November or December) and its magnitude (k-value raised to 0.7, 0.8, 0.9 or 1, i.e., the pre-pandemic level). For each relaxation scenario, the k-value set before the relaxation is identical to the no relaxation scenario. We chose to evaluate the impact of each relaxation scenario on the evolution of severe cases I4, i.e., infections requiring at least one medical consultation, and on the number of prevalent intensive care units' (ICU) hospitalizations. Because our model does not directly incorporate a hospitalized compartment, we extrapolated the predictive number of ICU hospitalizations by estimating the mean ratio between the past ICU hospitalizations from the SI-VIC database (Système d'Information pour le suivi des VICtimes d'attentats et de situations sanitaires exceptionnelles) and the past I4 cases. We successively explored a pessimistic immunity duration hypothesis, assuming that immunity wanes totally over 3 years instead of 9, and an optimistic hypothesis assuming that immunity does not wane. We also study one scenario without vaccine hesitancy, thus allowing vaccination of 100% of each eligible age class, and one analysis with a better vaccine efficacy ( Table 1) . The model was refit to estimate the retrospective k-value for all of these analyses except for the no vaccine hesitancy hypothesis. Finally, we implemented (crudely) a booster vaccination campaign for people over 75 in order to estimate the upper bound effect of this strategy. In this analysis, we assumed that, on September 1 st , 2021, a fraction of people over 75 moves from the S compartments to the corresponding V 2 compartments, ultimately returning all 75+ individuals that were previously protected by vaccination back to the V 2 protective classes. All rights reserved. No reuse allowed without permission. perpetuity. preprint (which was not certified by peer review) is the author/funder, who has granted medRxiv a license to display the preprint in The copyright holder for this this version posted August 30, 2021. ; Figures 2(a) and 3 show the k-value (reflecting the population compliance to barrier gestures) estimation and the model fit from May 13 th , 2020 to July 1 st , 2021 for the main analysis, respectively. Figures showing the k-value and the fit of the model to the data for the sensitivity analyses are shown in the supplementary material ( Figures S3, S4 and S5 ). In addition, Figure 2 (b) plots the reduction in the average number of contacts for the entire population over time, given the combined effect of the modifications in the contact matrices and the fitted k-value. We note qualitative similarities between this figure and the time-dependent transmission rate of COVID-19 in the French population 8 . perpetuity. preprint (which was not certified by peer review) is the author/funder, who has granted medRxiv a license to display the preprint in The copyright holder for this this version posted August 30, 2021. ; https://doi.org/10.1101/2021.08.29.21262788 doi: medRxiv preprint The predicted evolution of severe case I4 incidence for each relaxation scenario are presented in Figure 4 , from July 1 st 2021. Regardless of the timing, the complete relaxation of barrier gestures (setting k-value to 1, pink curve) is followed by an epidemic resurgence whose peak systematically exceeds that of the 2 nd and 3 rd epidemic waves in France. However, even in the optimistic scenario of no relaxation (defining as a barrier gesture applying at an equivalent level to that of the same period in 2020), we do observe a significant rebound (black curve). To focus on ICU hospitalizations, we estimated the ratio between ICU hospitalizations (from the SI-VIC database) and prevalent I4 cases in the past history of the pandemic ( Figure S7 ), which is on average 3.62%. Whatever the scenario (Figure 5) , the relaxation of barrier gestures leads to a predicted increase of prevalent ICU hospitalizations and the peak consistently exceeds French health care capacities (which is estimated at a maximum of about 5,000 ICU beds at the national level 57 ). All rights reserved. No reuse allowed without permission. perpetuity. preprint (which was not certified by peer review) is the author/funder, who has granted medRxiv a license to display the preprint in The copyright holder for this this version posted August 30, 2021. ; https://doi.org/10.1101/2021.08.29.21262788 doi: medRxiv preprint Figure 5 . Peak of Intensive Care Units' hospitalizations (ICU) predicted in France from July 2021 following each relaxation scenario, assuming that immunity wanes in 9 years. Relaxation scenarios: kvalue (barrier gesture compliance index) raised either to 0.7, 0.8, 0.9 or 1 in August, September, October, November or December. As expected, people over 75 years represent the major part of severe infections I4 ( Figure S8 ). While 90% of the 75+ have been vaccinated at least once by the end of June 2021 ( Figure S6 ), about 25% of them are fully susceptible in September 2021 ( Figure S9 ) due both to waning immunity and to the vaccine efficacy hypothesis. Nevertheless, in a sensitivity analysis assuming a 90% vaccine efficacy against infections after 2 doses, even though the predicted peak ICU hospitalizations following each relaxation scenario is on average 41.0% lower than in the main analysis, a complete relaxation of barrier gestures still overwhelms health care system (Table S10 and Figure S10 ). As shown in Figure 6 , our predictions are particularly sensitive to changes in our immunity duration assumptions. Assuming that immunity completely wanes over 3 years, we find that the ICU hospitalization peak is, on average, 86.1% higher than the same result when a 9-year immunity duration is assumed. In contrast, ICU hospitalizations peak at on average 46.1% lower when immunity is not allowed to wane (Table S11 ). (a) (b) Figure 6 . Peak of Intensive Care Units' hospitalizations (ICU) predicted in France from July 2021 following each relaxation scenario, assuming that immunity wanes in 3 years (a), or assuming that immunity does not wane (b). Relaxation scenarios: k-value (barrier gesture compliance index) raised either to 0.7, 0.8, 0.9 or 1 in August, September, October, November or December. In the absence of vaccine hesitancy, the vaccine coverage of at least one dose reaches 100% of the over 10-year-old population at the end of November 2021 ( Figure S11 and Table S12 ). Under this assumption, ICU hospitalizations peak at, on average, 47.7% lower than in the main analysis, which includes vaccine hesitancy. This effect is particularly strong for the November and December relaxation scenarios, for which assuming no vaccine hesitancy reduces the hospitalization peak by about 65% (Table S13 ). In that case, a complete relaxation of barrier gestures would be possible in November and December 2021 without exceeding the French ICU hospitalization capacities (Figure 7) . Figure 7 . Peak of Intensive Care Units' hospitalizations (ICU) predicted in France from July 2021 following each relaxation scenario assuming no vaccine hesitancy with a 9 years immunity duration. Relaxation scenarios: k-value (barrier gesture compliance index) raised either to 0.7, 0.8, 0.9 or 1 in August, September, October, November or December. Finally, we explored a crude implementation of a booster vaccination campaign for people over 75 years of age on the September 1 st , 2021. In this analysis, we find a 16.3% average reduction in ICU peak hospitalization following barrier gesture relaxation (Table S14 and Figure S12 ). Even though this analysis is optimistic, in that it assumes that all but the vaccine hesitant people over 75+ will receive their booster dose on this date, this crude implementation of a booster dose allows us to estimate the best expected benefit from a booster vaccination campaign among the elderly. We used an age-structured compartmental model of COVID-19 that takes into account waning and boosting of immunity from vaccination and infection 33 . We first showed that, considering the context of vaccine hesitancy in France and the delta variant breakthrough, maintaining application of barrier gestures appears essential to avoid a resurgence of severe infections that would exceed French health care capacities. Our study particularly highlighted the influence of immunity duration assumptions on the future short-term dynamic of the epidemic, which should not be neglected for further modelling. In addition, we reasserted the necessity to strengthen the vaccine rollout whereas current vaccines are effective (at least for severe disease) against the predominant delta variant 58 . Indeed, among our sensitivity analyses, the only scenario that would allow a complete barrier gesture relaxation without overwhelming ICU beds capacities, is relaxation occurring from November with a 100% vaccine coverage of the eligible population. Finally, according to our very preliminary analysis, the strategy consisting in the revaccination of people over 75, would not allow us to relax barrier gestures safely, in particular in the context of vaccine hesitancy. Nevertheless, further modelling is needed to evaluate more accurately this last statement. Our work is consistent with other French modelling having estimated that, given the current vaccine rollout and the progression of the delta variant, barrier gesture application will be necessary to maintain severe cases under health care capacities' limits 59 60 . Nevertheless, our predictions tend to be more pessimistic. One explication is that we took into account the greater transmissibility of the delta variant at the level of that it has been estimated by ECDC 29 , whereas these studies explored an inferior range of effective reproductive numbers. In addition, these studies assumed that immunity acquired after an infection or vaccination is definitive. Finally, our model, incorporating contact patterns, takes into account both school re-opening and recovery of on-site work, which leads to an increased transmission rates in September. Similar to our findings, a very high vaccination coverage has been estimated to be required to allow a complete relaxation of control measures 28 and a high vaccine hesitancy has been related to a prolonged need for non-pharmaceutical-interventions 61 . On the other hand, our work highlighted the influence of the immunity duration on the short-term dynamic of the epidemic. Few other studies chose to modelling the COVID-19 epidemic incorporating waning immunity 23 24 25 26 33 . Giannitsarou et al. estimated that, given the population turnover, the disease would become endemic in the long term with recurrent waves, which magnitude would depends on how fast immunity wanes 26 . Saad-Roy et al. showed that, the shorter immunity duration conferred by vaccination, the higher the vaccine coverage required to achieve herd immunity 25 . Measuring compliance of the population to barrier gestures is challenging. Our model is fit using a single parameter, the k-value. Because we incorporated the changes in contact patterns consequently to governmental measures directly in the contact matrices, this k-value reflects the population compliance to barrier gestures. Nevertheless, it also incorporates temporal variations in testing and variations in climatic conditions which influence transmission 8 . However, even though the detection rate increased significantly during the first months of the epidemic, it remained relatively stable during our calibration period 62 . Concerning climatic conditions, we estimated in another modelling study that transmission is increased in average by 10% during the winter period and decreased by 22% during the summer period 8 . Because we did not account for these variations, we expect our predictions to be somewhat overestimated in summer and underestimated in winter. Another limitation is that our model underestimates vaccine efficacy against severe infections after 2 doses, assuming that it is equal to vaccine efficacy against all infections (which is set to 80% in the main analysis). However, assuming an optimistic 90% vaccine efficacy after 2 doses against infections and severe cases, leads to similar conclusions with no possibility to fully relax barrier gestures safely. Moreover, we did not account for the increased risk of hospitalization related to the alpha variant compared to the historical strain 63 which could explain that our ICU hospitalizations/prevalent I4 ratio tends to increase over the calibration period. This could lead to an underestimation of the ICU hospitalizations rebound. Finally, we did not account for the age-related immune response heterogeneity to SARS-CoV2 infection and vaccine, which will have to be considered in the future to investigate more accurately the impact of a booster vaccination campaign among elderly. In conclusion, while the durability of immunity provided by an infection or by vaccination remains uncertain, we provide an insight on the predictable dynamic of the epidemic in France assuming that immunity wanes. To date, maintaining the application of barrier gestures seems unavoidable in the French context to not overwhelm health care capacities. While the possibility of a booster campaign among elderly is being considered, scientific evidences on its potential benefit are lacking. Variants of concern data for France are publicly available on: https://www.data.gouv.fr/fr/datasets/donnees-delaboratoires-pour-le-depistage-indicateurs-sur-les-variants/ Reported COVID-19 cases data for France are available on: https://www.data.gouv.fr/fr/datasets/donneesrelatives-aux-resultats-des-tests-virologiques-covid-19/ Prevalent intensive care unit's hospitalization data are for France are publicly available on: https://geodes.santepubliquefrance.fr/#c=indicator&f=0&i=covid_hospit.rea&s=2021-08-03&t=a01&view=map2 Conflicts of Interest: The authors declare no conflict of interest. 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Impact de l'accélération de la vaccination sur l'épidémie du variant Delta en France métropolitaine Epidemiology and Control of SARS-CoV-2 Epidemics in Partially Vaccinated Populations: A Modeling Study Applied to France Quantifying the Impact of Vaccine Hesitancy in Prolonging the Need for Non-Pharmaceutical Interventions to Control the COVID-19 Pandemic. Imperial College London, 2021 (to be submitted) Monitoring the Proportion of the Population Infected by SARS-CoV-2 Using Age-Stratified Hospitalisation and Serological Data: A Modelling Study Risk of Hospital Admission We thank Lauren Childs, Jing Li, Zhilan Feng, John Glasser and Gergely Rost for their discussions and input on this project. Our model tracks age, infection and immune status. Susceptible individuals of status i and age m are denoted by Sim. Infectious individuals of symptom severity j and age m are denoted by Ijm. Infected but not-yet-infectious individuals of symptom severity j, age m and stage k are denoted by E k jm.Vaccinated individuals of initial immune status i, age m and dose l are denoted by V l im. Parameter descriptions are found in Table 1 in the main test. The system of ODEs for age group m is given by the following set of equations:All rights reserved. No reuse allowed without permission.