key: cord-0076883-zfvc36oc
authors: Wen, Shu-Ran; Yang, Zheng-Hui; Dong, Tian-Xiang; Li, Yu-Ye; Cao, Ying-Kui; Kuang, Yi-Qun; Li, Hong-Bin
title: Deep Fungal Infections Among General Hospital Inpatients in Southwestern China: A 5-Year Retrospective Study
date: 2022-03-28
journal: Front Public Health
DOI: 10.3389/fpubh.2022.842434
sha: 84a5790ec29215f32324b13bdd0184ddafc8ec6c
doc_id: 76883
cord_uid: zfvc36oc

BACKGROUND: Deep fungal infection is a type of life-threatening opportunistic infection. Its incidence has been increasing in recent years. This infection can affect the prognosis of patients, prolong hospital stays and raise costs for patients and their families. OBJECTIVE: We aimed to understand the current situation of deep fungal infections in the First Affiliated Hospital of Kunming Medical University and to provide a basis for the clinical diagnosis and treatment of deep fungal infections. METHODS: This was a retrospective analysis of 528,743 cases in the hospital from 2015 to 2019, including the epidemiological characteristics, treatment and prognosis of deep fungal infections. RESULTS: A total of 274 cases (0.05%) with deep fungal infections were identified, accounting for 0.05% of the total number of hospitalizations. The incidence of deep fungal infections in the hospital showed an increasing trend from 2015 to 2019. The most commonly infected site was the respiratory tract (93.07%). Among patients with deep fungal infections, 266 specimens were positive for fungal culture, by which 161 cultured Candida albicans (C. albicans), accounting for 60.53%, the main pathogen causing deep fungal infection. From 2015 to 2019, the percentage of C. albicans cases showed a downward trend, while that of non-C. albicans showed an opposite trend. Antibiotics were the most common predisposing factor for deep fungal infections (97.45%). Among the underlying diseases of patients with deep fungal infections, infectious diseases (59.49%) were the most common. Those with underlying diseases such as renal insufficiency and neurological diseases had a worse prognosis. Indwelling catheters, nervous system disease and tumors were risk factors for a poor prognosis. CONCLUSIONS: We report for the first time the epidemiological data of deep fungal infections in a general hospital in southwestern China from 2015 to 2019. In the past 5 years, the number of patients with deep fungal infections in the First Affiliated Hospital of Kunming Medical University has been increasing. Although the clinical data are limited, these results can provide references for the diagnosis and treatment of deep fungal infections.

Results: A total of 274 cases (0.05%) with deep fungal infections were identified, accounting for 0.05% of the total number of hospitalizations. The incidence of deep fungal infections in the hospital showed an increasing trend from 2015 to 2019. The most commonly infected site was the respiratory tract (93.07%). Among patients with deep fungal infections, 266 specimens were positive for fungal culture, by which 161 cultured Candida albicans (C. albicans), accounting for 60.53%, the main pathogen causing deep fungal infection. From 2015 to 2019, the percentage of C. albicans cases showed a downward trend, while that of non-C. albicans showed an opposite trend. Antibiotics were the most common predisposing factor for deep fungal infections (97.45%). Among the underlying diseases of patients with deep fungal infections, infectious diseases (59.49%) were the most common. Those with underlying diseases such as renal insufficiency and neurological diseases had a worse prognosis. Indwelling catheters, nervous system disease and tumors were risk factors for a poor prognosis.

Conclusions: We report for the first time the epidemiological data of deep fungal infections in a general hospital in southwestern China from 2015 to 2019. In the past 5 years, the number of patients with deep fungal infections in the First Affiliated Hospital of Kunming Medical University has been increasing. Although the clinical data are limited, these results can provide references for the diagnosis and treatment of deep fungal infections.

Deep fungal infections can involve subcutaneous tissue, mucosa, and internal organs, including limited single-organ infections and systemic infections involving multiple organs. Deep fungal infection is a life-threatening opportunistic infection that commonly occurs in immunocompromised individuals, and its incidence has been increasing in recent years (1) . The occurrence of deep fungal infections is related to the widespread use of broad-spectrum antibacterial drugs, immunosuppressive agents, catheter technology, and organ transplantation, and the increase in patients with AIDS, malignant tumors, and the elderly (2) .

Epidemiological research reports showed that among patients who died of deep fungal infection in general hospitals, the mortality rate caused by candidiasis was 50-71% (1). Candida is the most common pathogen of deep fungal infections (3) . It is widely found in human skin and mucous membranes and is usually maintained as a benign colonization state.

At least 15 different Candida species have been identified to be associated with diseases in humans. More than 90% of invasive candidiasis cases are caused by the five most common pathogens: Candida albicans (C. albicans), Candida glabrata (C. glabrata), Candida tropicalis (C. tropicalis), Candida parapsilosis (C. parapsilosis), and Candida krusei (C. krusei) (4). Although C. albicans is still the most common species, the infection rate of non-C. albicans spp. has increased significantly in recent decades, especially in ICU patients (5) (6) (7) . According to an epidemiological study conducted in Europe, the mortality rate of patients with non-C.albicans infections is higher than that of patients with C. albicans infections (47.3 and 32.4%, respectively) (8, 9) . Bloodstream infections caused by non-C. albicans spp. are difficult to treat due to antifungal drug resistance and have a high mortality rate (10) (11) (12) (13) (14) .

The common pathogens of deep fungal infections are Aspergillus and Cryptococcus rank after Candida (3). In recent years, some rare filamentous fungi such as Mucor and Fusarium have been reported from time to time in patients with hematological malignancies and bone marrow transplantation (11) . In this study, we conducted a retrospective analysis of the status of deep fungal infections in the First Affiliated Hospital of Kunming Medical University from January 2015 to December 2019.

We screened inpatients from January 2015 to December 2019 from the medical record room of the First Affiliated Hospital of Kunming Medical University, and then screened out cases of fungal infection by their laboratory tests. Each hospitalization represented a case, and if the patient was hospitalized again and received another round of treatment, it was considered a new independent case. The same patient was considered to be a case if the same fungus was cultured multiple times from specimens from the same source during the same hospitalization period. Case exclusion criteria: cases with incomplete data on epidemiology, fungal microscopy, and culture examinations. 

Fungal identification was done by fungal direct microscopy and mycologic culture. The samples such as sputum, cerebrospinal fluid, blood, urine, exudates were inoculated on Sabouraud's dextrose agar with chloramphenicol at 35 • C for 5-7 days. Positive samples were sub-cultured on Sabouraud chloramphenicol agar or blood agar at 35 • C for 24-48 h. The yeasts were identified by API 20 C AUX, other filamentous fungi were identified by biochemical and morphological features.

Statistical analysis was performed using SPSS 25.0. This study is based on the count data described by the number of cases and the percentage. The test chi-square test was used for comparisons between groups of enumeration data. A two-tailed t-test was used to determine significant differences between the means in age and the length of stay. Binary logistic regression was used to compare multivariate associations. P < 0.05 indicates that the difference is statistically significant.

From January 2015 to December 2019, there were 528,743 inpatients in the First Affiliated Hospital of Kunming Medical University, including 86,551, 88,393, 105,890, 119,575 and 128,334, respectively. According to the above diagnostic criteria, 274 (0.05%) cases of deep fungal infections were diagnosed. The diagnosed deep fungal infection case numbers and the rates (the number of diagnosed cases of deep fungal infection/the total number of hospitalized cases in the year × 100%) were 13 (0.015%), 40 (0.045%), 43 (0.041%), 86 (0.072%), and 92 (0.072%) from 2015 to 2019, respectively. Retrospective analysis of 528,743 cases demonstrated that the incidence of deep fungal infections showed an increasing trend from January 2015 to December 2019, during which 2018 and 2019 had the highest incidences, whose highest values were the same (0.072%) ( Figure 1A ).

The sex statistics of patients diagnosed with deep fungal infections were 187 men, accounting for 68.25%, and 87 women, accounting for 31.75% ( Table 1 ). The age of the patients with deep fungal infections ranged from 4 years old to 93 years old, with an average age of 61.04 ± 16.89. Most of them were distributed in the three age groups of 51-60 years old (16.79%), 61-70 years old (25.91%), and 71-80 years old (19.71%). Patients over 60 years old accounted for 57.66% of the total number of deep fungal infections ( Figure 1B) .

The top three departments diagnosing patients with deep fungal infections were the respiratory department (94 cases, 34.31%), the transplantation department (34 cases, 12.41%), and the cardiology department (30 cases, 10.95%) ( Figure 1C) .

The main site of deep fungal infection was the respiratory system with 255 cases (93.07%), followed by central nervous system with 11 cases(4.01%), the abdominal cavity with 4 cases (1.46%) and the thoracic cavity and blood with 2 cases each (0.73%) ( Figure 1D ). 

Among the patients with deep fungal infections, 266 specimens were positive on fungal culture. The results were as follows: 161 cases (60.53%) of C. albicans, 56 cases (21.05%) of C. glabrata, 22 cases (8.27%) of C. krusei, 13 cases (4.89%) of C. tropicalis, 3 cases (1.13%) of other Candida, 8 cases (3.01%) of Aspergillus, 1 case (0.38%) each of Cryptococcus, Fusarium, and Geotrichum (Figure 2A) . From 2015 to 2019, the percentage of Candida albicans showed a downwards trend, while the percentage of non-C. albicans spp. showed an upwards trend.

Among the 274 patients diagnosed with deep fungal infections, 267 (97.45%) had history of using antibiotics, 116 (42.34%) had history of using indwelling catheters, 113 (41.24%) had history of using glucocorticoids, 31 (11.31%) had history of using immunosuppressive agents, 1 (0.36%) had history of using chemotherapy drugs, and 3 (1.09%) had no specific predisposing factors ( Table 2) . Indwelling catheters were a risk factor for a poor prognosis (OR = 3.525, 2.041-6.089). Figure 2B ). (Figure 3A) . Among the 220 patients with deep fungal infections who used antifungal drugs, 178 were single drugs, accounting for 75.74%, and 42 (17.87%) were used in combination, alternate use, or combined/alternative use. Among them, two antifungal drugs were used in 33 cases (14.04%), and three antifungal drugs-were used in 9 cases (3.83%) (Figure 3B) .

The prognosis of 153 (55.84%) patients among the 274 with deep fungal infections was good (cured + improved), including 28 cured (10.22%) and 125 improved (45.62%). A poor prognosis (unhealed + death) was observed for 121 (44.16%) of the deep fungal infections, including unhealed 100 cases (36.50%) and 21 died cases (7.66%) ( Figure 3C ).

There was no statistically significant difference in age, sex or length of hospital stay between patients with deep fungal infections with a good prognosis and those with a poor prognosis (P > 0.05). Among the basic diseases, patients with deep fungal infections with renal insufficiency, tumors, and neurological diseases had a poor prognosis (P < 0.05). A tumor was a risk factor for a poor prognosis (OR = 2.558, 1.127-5.804). A nervous system disease was also a risk factor for a poor prognosis (OR = 5.288, 1.620-17.265). See Table 3 for details.

As a life-threatening opportunistic infection, the incidence of deep fungal infection has increased in recent years (1, 14, 15) . Recent studies have shown that 1.5 million people die from fungal infections worldwide each year, which is similar to the number of deaths caused by tuberculosis each year (16) . The lack of specific symptoms makes the diagnosis of deep fungal infections more difficult. Once inpatients develop a deep fungal infection, it will increase the patient's hospital stay and economic costs. (17). Our research results are consistent with those reported in the previous literature. In recent years, the incidence of deep fungal infections has been increasing. In addition to the increased use of antibiotics, immunosuppressants, and indwelling catheters, this may also be related to the improvement of diagnostics. Improved fungal tests helps to identify patients with fungal infections earlier and enables timely intervention and treatment so that patients can obtain a better outcome (18) .

Many studies have shown that age is a risk factor for deep fungal infections (1). Most elderly patients have a variety of underlying diseases, low immune function, and long hospital stays, and they are prone to multisystem infections. At the same time, their defense ability of the skin and mucous membranes is reduced, so their risk of fungal infection is greatly increased. In Previous studies have demonstrated that fungal infections mainly occur in the respiratory system and urinary system (19) . The analysis of this study showed that patients with deep fungal infections mainly came from the respiratory department and transplantation department, accounting for 34.31 and 12.41% respectively. The main sites of infection were the respiratory system, central nervous system and abdominal cavity, which accounted for 93.07, 4.01, and 1.46% respectively. During clinical treatment, special attention should be given to patients in departments with a high incidence of respiratory fungal infections, especially respiratory and transplantation departments. The reason why deep fungal infections occurred more frequently in the respiratory department may be that patients in the respiratory department were hospitalized for a long time. Prolonged hospitalizations may increase the exposure of fungal pathogens. Fungal pathogens are very abundant in hospitals settings and difficult to eradicate (20) . In addition, most of the patients in the respiratory department were elderly patients with serious underlying diseases. Most of them needed to use broad-spectrum antibiotics. For elderly patients, the ability to clear cilia of respiratory tract mucosa is weak, and there is more hyperplasia and secretion by bronchial glands (21) , and reduced pathogen clearance ability. There are many normal microorganisms colonizing the respiratory tract. Only when the immune function of the body is weakened can these opportunistic pathogens cause infection in the corresponding site. In addition, the large number of patients with deep fungal infections in the respiratory department may be correlated with the importance attached to fungal infections by respiratory doctors in our hospital so that relevant examinations are performed in a timely fashion to confirm the diagnosis. At the same time, due to the development of transplantation technology in recent years, the increase in transplant patients, invasive surgery and the widespread use of antibiotics, hormones or immunosuppressive agents, there is an increased susceptibility to deep fungal diseases, so the transplantation department has become a high incidence department of deep fungal infections.

Candida infections are ranked first in the species distribution of deep fungal infections. Among them, C. albicans was the main pathogen causing deep fungal infections (60.53%), followed by C. glabrata (21.05%). This result is consistent with the distribution of fungal species reported in the literature (22) . The proportion of C. glabrata in Candida infections have been increasing in recent years. According to international reports, C. glabrata accounts for 17%-26% of patients with invasive fungal infections (23, 24) . Our results are consistent with this finding. C. glabrata is resistant to a variety of antifungal drugs, and its invasive infection has a fatality rate of up to 50%, which brings great difficulties to the treatment of patients with invasive fungal infections (25) . Most C. glabrata are naturally resistant to azole antifungal drugs (26) . The mortality rate of patients with C. glabrata candidaemia who used voriconazole was significantly higher than that of patients who used echinocandin (27) . The wrong choice of azole antifungal drugs by clinicians may lead to a further decrease in the patient's immunity, which means they are more likely to have multiple Candida infections. Other studies have suggested that invasive C. glabrata infection is likely to occur in patients with weakened immunity and neutropenia (25) , which may be the reason why patients with invasive C. glabrata infection are more likely to have multiple Candida infections. According to previous reports, in general hospitals in northeastern China, the most common pathogen of deep infections is C. parapsilosis (34.8%), followed by C. gillimonella (26.7%), C. albicans (18.5%), and C. glabrata (8.1%) (20) . This is different from the findings of this study, which may be due to differences in geographic regions, climate and temperature. The literature reports that 69.2% of aspergillosis occurs in the ICU (28) . Our research identified aspergillus as accounting for 3.01% of deep fungal infections. This relatively low incidence may be correlated with the relatively dry climate in this region.

The use of broad-spectrum antibiotics, glucocorticoids, immunosuppressants, indwelling catheters, and chemotherapy drugs are common predisposing factors for deep fungal infections. Our study found that the use of antibiotics was the most prominent predisposing factor for deep fungal infections (97.45%), which is consistent with previous report (29) . This was followed by indwelling catheters (42.34%)and the long-term use of glucocorticoids (41.24%). For the application of broadspectrum antibiotics, the wider the scope of the antibiotic, the stronger its antibacterial ability, and the greater the risk that it will cause fungal infections, especially carbapenems, thirdgeneration cephalosporins and fourth-generation quinolones. Furthermore, our study found that the most commonly used antifungal drugs in our hospital for the treatment of deep fungal infections were voriconazole, itraconazole, caspofungin, micafungin, fluconazole, amphotericin B, and posaconazole, among which the top two ranking drugs were fluconazole (38.32%) and voriconazole (35.40%) both of which are triazoles. Most of the deep fungal infections in our hospital were treated with single medications, which is consistent with the trend of previous research results. Clinically, patients with mild symptoms are mostly treated with a single medication, while severe deep fungal infections are often treated with combination medications.

Indwelling catheters can increase the risk of fungal infections. Candida is currently the leading cause of bloodstream infections with high mortality and high morbidity (30) . Candidemia is highly related to the formation of biofilms on a central venous catheter. Catheters can provide an attachment surface for Candida, allowing it to settle and form a biofilm, while enhancing its resistance to antifungal drugs, especially azoles and polyenes, thereby promoting the formation of infections (30, 31) . The biofilm formed by Candida is more resistant to antifungal drugs (31) . Therefore, the formation and development of biofilms on medical indwelling catheters is an ongoing problem during clinical treatment (32) . Clinically, patients with indwelling catheters should be alert to increased risk of fungal infections.

Infectious diseases (59.49%) and tumors (10.22%) are the most important underlying diseases in patients with deep fungal infections. Infections and tumors damage the local or overall immune function of the body so that the fungus can break through the immune defense of the body and cause deep tissue infection or fungal bacteremia. This study found that among the underlying diseases, renal insufficiency, tumors, and neurological diseases can influence the prognosis of deep fungal infections (P < 0.05). Due to the lack of specific clinical manifestations of deep fungal infection, infectious diseases such as HIV, tuberculosis, lung bacterial infection, bacteremia, etc. not only increase the difficulty of diagnosis of a deep fungal infection but also aggravate the patient's condition (33) .

Most patients with deep fungal infections had a good prognosis (55.84%), and their age did not affect their prognosis, while underlying diseases such as renal insufficiency, tumors, and neurological diseases affected the prognosis of deep fungal infection (P < 0.05). Therefore, for patients with underlying diseases, especially renal insufficiency, tumors, and neurological diseases, attention should be given to the possibility of deep fungal infections, and the use of antifungal drugs should be emphasized to improve their prognosis and avoid deterioration of their disease.

From 2015 to 2019, the deep fungal infection rate and Candida glabrata infections in the First Affiliated Hospital of Kunming Medical University both showed an upwards trend. Deep fungal infections mostly occurred in patients over 60 years old, affecting more men than women. The respiratory and transplantation department had higher incidences of deep fungal infections, and the most common sites were the respiratory and central nervous system. Candida is the main pathogen, with Candida albicans accounting for 60.53%, followed by Candida glabrata (21.05%). Patients with deep fungal infections with renal insufficiency and neurological diseases have a worse prognosis. These findings will provide references for the diagnosis and treatment of deep fungal infections.

The raw data supporting the conclusions of this article will be made available by the authors, without undue reservation.

S-RW, Y-KC, T-XD, and Y-YL collected and filtered the data. Z-HY and S-RW analyzed the data and wrote the initial draft of the article. Z-HY, S-RW, Y-QK, and H-BL interpreted the data. Y-QK and H-BL conceived and designed the study and critically revised the manuscript. All authors contributed to the article and approved the submitted version. 

A risk factor analysis of healthcare-associated fungal infections in an intensive care unit: a retrospective cohort study

Risk factors for early invasive fungal disease in critically ill patients

Candida and invasive mould diseases in non-neutropenic critically ill patients and patients with haematological cancer

Clinical Practice Guideline for the Management of Candidiasis: 2016 Update by the Infectious Diseases Society of America

Distribution of invasive fungal infections: Molecular epidemiology, etiology, clinical conditions, diagnosis and risk factors: a 3-year experience with 490 patients under intensive care

Incidence of pulmonary aspergillosis and correlation of conventional diagnostic methods with nested PCR and real-time PCR assay using BAL fluid in intensive care unit patients

First report of invasive Aspergillus rhinosinusitis in a critically ill COVID-19 patient affected by acute myeloid leukemia, northeastern Iran

Morbidity and mortality of candidaemia in Europe: an epidemiologic meta-analysis

Candidemia in intensive care unit: a nationwide prospective observational survey (GISIA-3 study) and review of the European literature from 2000 through 2013

Candida albicans versus non-albicans intensive care unit-acquired bloodstream infections: differences in risk factors and outcome

Emerging Invasive Fungal Infections in Critically Ill Patients: Incidence, Outcomes and Prognosis Factors, a Case-Control Study

Revision and Update of the Consensus Definitions of Invasive Fungal Disease From the European Organization for Research and Treatment of Cancer and the Mycoses Study Group Education and Research Consortium

Chinese Association Hematologists; Chinese Invasive Fungal Infection Working Group. The Chinese guidelines for the diagnosis and treatment of invasive fungal disease in patients with hematological disorders and cancers (the 6th revision)

Disseminated phaeohyphomycosis caused by Cyphellophora ludoviensis: A novel case report from Iran

Molecular Identification of Candida Species in Bronchoalveolar Lavage Specimens of Hospitalized Children with Pulmonary Disorders

Global and Multi-National Prevalence of Fungal Diseases-Estimate Precision

Mortality Trends in Risk Conditions and Invasive Mycotic Disease in the United States

Rapid detection of Candida species in bronchoalveolar lavage fluid from patients with pulmonary symptoms

Pulmonary fungal infections

A 5-Year Review of Invasive Fungal Infection at an Academic Medical Center

Strain Distribution and Drug Susceptibility of Invasive Fungal Infection in Clinical Patients With Systemic Internal Diseases

Invasive Fungal Infections in the Intensive Care Unit

Epidemiology and outcomes of candidemia in 2019 patients: data from the prospective antifungal therapy alliance registry

French Mycosis Study Group. Worrisome trends in incidence and mortality of candidemia in intensive care units

TRANSNET Investigators. The epidemiology and outcomes of invasive Candida infections among organ transplant recipients in the United States: results of the Transplant-Associated Infection Surveillance Network (TRANSNET)

Drug resistance mechanisms and their regulation in non-albicans Candida species

Fluconazole versus an echinocandin for Candida glabrata fungaemia: a retrospective cohort study

Putative invasive pulmonary aspergillosis within medical wards and intensive care units: a 4-year retrospective, observational, single-centre study

Retrospctive Analysis of Deep Fungus Infection of Inpatients in General Hospital

Association of different Candida species with catheter-related candidemia, and the potential antifungal treatments against their adhesion properties and biofilm-forming capabilities

Effects of fluconazole, amphotericin B, and caspofungin on Candida albicans biofilms under conditions of flow and on biofilm dispersion

Fungal biofilms in sinonasal polyposis: The role of fungal agents is notable?

Tuberculosis Status and Coinfection of Pulmonary Fungal Infections in Patients Referred to Reference Laboratory of Health Centers Ghaemshahr City during 2007-2017

Medical University, Yunnan, China (202001AY0700001-302), and the Key Plan Project of Science and Technology from the Department of Science and Technology of Yunnan Province (202101AY070001-022).

The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.Publisher's Note: All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.Copyright © 2022 Wen, Yang, Dong, Li, Cao, Kuang and Li. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.