key: cord-0064394-vpycpscy
authors: Niu, Kai; Li, Qifang; Liu, Yuan; Qiao, Yi; Li, Bingbing; Wei, Chao; Wang, Kunrui; Cui, Lu'an; Zheng, Canlei; Wang, Rong; Zhang, Li; Zhang, Honghua; Sun, Bing; Yu, Bin
title: Molecular Targets and Mechanisms of Scutellariae radix-Coptidis rhizoma Drug Pair for the Treatment of Ulcerative Colitis Based on Network Pharmacology and Molecular Docking
date: 2021-06-04
journal: Evid Based Complement Alternat Med
DOI: 10.1155/2021/9929093
sha: dfb982c73edc7ec782883ceca58cdd0383687222
doc_id: 64394
cord_uid: vpycpscy

This study aims to analyze the targets of the effective active ingredients of Scutellariae radix-Coptidis rhizoma drug pair (SCDP) in ulcerative colitis (UC) by network pharmacology and molecular docking and to explore the associated therapeutic mechanism. The effective active ingredients and targets of SCDP were determined from the TCMSP database, and the drug ingredient-target network was constructed using the Cytoscape software. The disease targets related to UC were searched in GeneCards, DisGeNET, OMIM, and DrugBank databases. Then, the drug ingredient and disease targets were intersected to construct a protein-protein interaction network through the STRING database. The Metascape database was used for the Gene Ontology and Kyoto Encyclopedia of Genes and Genomes pathway enrichment analyses of the predicted targets of SCDP for UC. The Autodock software was used for molecular docking between the main active ingredient and the core target to evaluate the binding ability. SCDP has 43 effective active ingredients and 134 intersection targets. Core targets included AKT1, TP53, IL-6, VEGFA, CASP3, JUN, TNF, MYC, EGFR, and PTGS2. GO functional enrichment analysis showed that biological process was mainly associated with a cytokine-mediated signaling pathway, response to an inorganic substance, response to a toxic substance, response to lipopolysaccharide, reactive oxygen species metabolic process, positive regulation of cell death, apoptotic signaling pathway, and response to wounding. KEGG enrichment analysis showed main pathway concentrations were related to pathways in cancer, AGE-RAGE signaling pathway in diabetic complications, bladder cancer, IL-17 signaling pathway, apoptosis, p53 signaling pathway, and PI3K-Akt signaling pathway. The drug active ingredient-core target-key pathway network contains 41 nodes and 108 edges, of which quercetin, wogonin, baicalein, acacetin, oroxylin A, and beta-sitosterol are important active ingredients; PTGS2, CASP3, TP53, IL-6, TNF, and AKT1 are important targets; and the pathways involved in UC treatment include pathways in cancer, PI3K-Akt signaling pathway, AGE-RAGE signaling pathway in diabetic, apoptosis, IL-17 signaling pathway and herpes simplex infection. The active ingredient has a good binding capacity to the core target. SCDP key active ingredients are mainly quercetin, wogonin, baicalein, acacetin, oroxylin A, and beta-sitosterol, which function mainly by regulating targets, such as PTGS2, CASP3, TP53, IL-6, TNF, and AKT1, and are associated with multiple signaling pathways as pathways in cancer, PI3K-Akt signaling pathway, apoptosis, IL-17 signaling pathways.

Ulcerative colitis (UC), a type of inflammatory bowel disease (IBD), is a chronic inflammatory disease of the intestine characterized by abnormal intestinal mucosal structure, changes in intestinal bacterial composition, and systemic biochemical dysfunction. It is an incurable disease with low mortality [1] . e incidence of this disease is 11.60 per 100,000 individuals and 24.5 per 100,000 individuals in China and Hong Kong, respectively, which is lower than the incidence in Western countries but shows an increasing annual trend [2] [3] [4] [5] .

e main clinical symptoms are abdominal pain, diarrhea, bloody purulent stools, and weight loss accompanied by numerous neutrophils, macrophages, and inflammatory factors infiltrating the intestinal mucosa. e pathogenesis of this disease is not clear, and studies suggest a complex interaction among host genetic factors, immunity, and microbial environmental exposure [6] . In addition to aminosalicylic acid preparations and corticosteroids, immunomodulators, Janus kinase inhibitors, and some biological agents, such as tumor necrosis factor-alpha (TNF-α), interleukin (IL)-17A, and IL-12/IL-23p40 antibodies, have been applied in the clinical treatment of UC [7] . However, more and more patients eventually become refractory or intolerant to the side effects or complications of drugs, and the persistence of chronic inflammatory conditions often becomes a risk factor for inducing colorectal cancer [8, 9] . Under the circumstance, traditional Chinese medicines (TCMs) play an important role in the treatment of UC and are regarded as complementary and alternative medicine treatment options. Also, much evidence has shown that TCM therapies, including Chinese herbal medicine, Chinese patent medicine, acupuncture, moxibustion, have potentially positive effects on UC [10, 11] .

Scutellariae radix-Coptidis rhizoma drug pair is the main ingredient herb for clearing away heat and dampness. eir compatibility is often used to treat damp-heat syndromes, dysentery, diarrhea, and other diseases [12] [13] [14] . Furthermore, they are the main ingredient drugs in the classical prescriptions as Gegen Qinlian decoction, Wumei pill, Banxia Xiexin decoction, and Shaoyao decoction, and others [15] [16] [17] [18] . e combination of Scutellaria baicalensis and Coptis chinensis is mainly responsible for clearing away heat and dampness and has an antidiarrheal and antidysentery efficacy. Furthermore, Hu et al. used a database to analyze the medication regularity of TCM compounds in the treatment of UC. Results showed that Scutellaria baicalensis and Coptis chinensis were among the top 26 drugs with the highest medication, of which and Coptis chinensis was the most frequently used drug [19] . Professor Jingri Xie advocated that Scutellaria baicalensis, Coptis chinensis, Phellodendron amurense, and Sophora flavescens can be used together and they are particularly suitable for patients with the damp-heat syndrome, such as abdominal bloat, bitter mouth, nausea, vomiting, and/or yellow tongue coating [20] . Previous work in our laboratory also confirmed that Scutellaria baicalensis and Coptis chinensis are the drugs which were used more frequently in the treatment of UC and are commonly paired drugs to treat damp-heat intrinsic syndrome [21, 22] .

One proposed mechanism of the Scutellariae radix-Coptidis rhizoma drug pair (SCDP) in the treatment of UC is that baicalein can reduce the number of apoptotic intestinal epithelial cells due to its ability to reduce the expression of the 78-kDa glucose-regulated protein (GRP78) and caspase-3 [23] . Researchers have found that berberine-nanostructured lipid carriers can block the nuclear translocation of nuclear factor-kappa B (NF-κB), reduce the expression of the proinflammatory cytokines IL-1β, IL-6, matrix metalloproteinase-9, chemokine motif receptor 1 (CX3CR1), cyclooxygenase-2 (COX-2), and telomerase reverse transcriptase, and increase the expression of the tight junction scaffolding protein zonula occludens-1, to play a therapeutic role in UC [24] . Gegen Qinlian decoction, comprising herbs Scutellariae radix and Coptidis rhizoma, exert therapeutic effects by inhibiting the expression of toll-like receptor 4 (TLR4)/NF-κB pathway and suppressing the inflammatory factors secretion as TNF-α, IL-6, IL-1β, and IL-4 in the colon of UC animal models [15] . In addition, a recent report has revealed that baicalin, which was the main ingredient of Coptidis rhizoma, can exert a therapeutic effect on UC through increasing glutathione peroxidase and superoxide dismutase contents and inhibiting oxidative stress response as well as apoptosis [10] .

Network pharmacology and molecular docking are new technologies based on systems biology and databased molecular correlation analysis in the exploration of new drugs and prediction of drug targets. Network pharmacology emphasizes multi-ingredient-multitargets-multipathway regulation of the signal pathway. Many studies have confirmed that network pharmacology is significant for determining the target of drugs and screening the active ingredients of drugs [25] [26] [27] . In this study, the mechanism of Scutellariae radix-Coptidis rhizoma drug pair in the treatment of UC was analyzed by network pharmacology technology and molecular docking approaches to help better guide clinical treatment and mechanism research.

e Traditional Chinese Medicine Systems Pharmacology (TCMSP) database and analysis platform (https://tcmspw. com/tcmsp.php) was used for the active ingredient screening. Oral bioavailability (OB) ≥30% and drug-likeness (DL) ≥0.18 were used as absorption, distribution, metabolism, and excretion parameters. Target genes were predicted using TCMSP and the Swiss Target Prediction database (http:// www.swisstargetprediction.ch/) after identifying the active ingredients. e names of the predicted target genes were standardized from the UniProt database (https://www. uniprot.org/). e SCDP ingredients and target gene network were drawn using the Cytoscape software, and the top 10 active ingredients were identified by their degree values.

(https://www.genecards.org/), DisGeNET (https://www.disgenet.org/), OMIM (http://www.omim. org/), and DrugBank (https://www.drugbank.ca/) were selected to obtain UC-related pathogenic genes. Both databases can be used to find the most cutting-edge diseaserelated genes. All the databases were used "ulcerative colitis" as the keyword.

Genes. PPI is particularly important for biological process analyses and is vital for understanding complex mechanisms in a living cell. PPI network mapping was performed on the obtained bioactive ingredients and disease targets using the Search Tool for the Retrieval of Interacting Genes (STRING) database (http://string-db.org/) with the species limited to "Homo sapiens" and a confidence score of >0.4. Next, the interaction files were downloaded and imported into Cytoscape to visualize the PPI network and analyze the topological value. en, based on the MCODE plug-in, the targets with a median value and a median value that was not less than the average value were recognized as the key targets of SCDP for the treatment of UC. And the top 10 ranked proteins were defined as hub targets based on the degree level.

e predicted targets were imported into the Metascape database (http:// metascape.org/) for GO and KEGG enrichment analyses by entering the list of intersection target gene names and selecting the species as "Homo sapiens" for customized analysis with a cutoff P value of <0.01. According to the results, a network visualization was constructed by the tools in the bioinformatics website (http://www.bioinformatics. com.cn).

Network.

e SCDP active ingredients predicted target genes, and the top 20 key pathways for enrichment analysis were imported into the Cytoscape software to construct the drug ingredient-target genes-pathway interaction network. Topological analysis was performed on the constructed network according to the values of degree centrality, betweenness centrality, and closeness centrality.

2.6. Molecular Docking. Molecular docking is used to interpret the binding area of small molecule ligands and macromolecular receptors through computer simulation and then calculates the physical and chemical parameters for predicting the affinity between the two. Receptor and ligand files were downloaded from PubChem (https://pubchem. ncbi.nlm.nih.gov/) and PDB (https://www.rcsb.org) databases.

And then, molecular docking was performed using the AutoDockTools software. e docking range between the protein and the active ingredient was set using AutoGrid, and molecular docking was performed by running the "Genetic Algorithm" using Docking settings, with binding energy less than 0 indicating a good potential for ligand binding to the receptor.

According to the two screening conditions of OB value and DL index, 50 active ingredients of SCDP, including 36 ingredients in Scutellariae radix and 14 ingredients in Coptidis rhizoma, were obtained from TCMSP. Eight ingredients were eliminated because they showed no predicted targets in either the TCMSP or Swiss Target Prediction databases. Finally, 43 ingredients, including 32 in Scutellariae radix, 11 in Coptidis rhizoma, and coptisine and epiberberine as two common ingredients, were obtained (Table 1) .

en the target genes of 43 active ingredients were collected for target genes prediction in TCMSP and Swiss Target Prediction. After merging the data and deleting duplicates, 223 target genes were finally distinguished.

Drug active ingredient-target gene interaction networks were obtained by importing the active ingredients and predicted genes into Cytoscape 3.8.0. ere are 266 nodes and 824 edges ( Figure 1 ). e edges represent the interrelationships between the drug and active ingredients and between the ingredients and targets. Meanwhile, the degree value represents the number of routers connected to each node in the network. e higher the degree value, the more likely the node plays a key role in the network. In this network, the same compound acted on multiple targets. Simultaneously, multiple compounds shared the same target. Furthermore, the top 10 key active ingredients and 19 core targets (degree ≥10) were screened according to the degree value as shown in Tables 2 and 3. e purple squares represent the drug Scutellariae radix and Coptidis rhizoma. e green octagons represent the ingredients in Scutellariae radix, while green hexagons represent the ingredients of Coptidis rhizoma. e red circle represents the common active ingredient of SCDP. e blue diamond represents the predicted target. e area and color transparency of the node represent its value. e darker the area and color, the more important the node. SCDP: Scutellariae radix-Coptidis rhizoma drug pair.

e disease genes related to UC were collected from GeneCards, Dis-GeNET, OMIM, and DrugBank, with "ulcerative colitis" as the keyword. Taking 1.795 and 4.51 as the median "Relevance score," 1111 relevant targets were screened in Gen-eCards. Meanwhile, 1458, 552, and 65 pathogenic genes were obtained from the DisGeNET, OMIM, and DrugBank databases, respectively. e UniProt database was used to standardize target names, and finally a total of 2386 UCrelated pathogenic target genes were obtained after collating and removing duplicates.

Screening. A total of 134 intersection targets were obtained by screening drug ingredient targets and disease targets Evidence-Based Complementary and Alternative Medicine using the Wayne diagram. e PPI network was construed by the STRING databases of the 134 targets, as shown in Figure 2 , with 134 nodes, 2612 edges, an average node degree of 39, and a PPI enrichment p < 1.0e − 16.

e obtained TSV format files of the PPI network were imported into the Cytoscape software for visualization analysis. As the interactions between proteins in the PPI networks are reciprocal, it is usually classified as an undirected graph. Some regions with high density were present in the PPI complex network, and they are called a community or module. e networks within modules are potential subnetworks of the PPI network, with a high density of connections in the subnetworks and few connections in other regions. erefore, modules are considered to be biologically significant sets. e sets have two meanings: (1) protein complex, (i.e., multiple proteins combine to form a complex, which then plays a biological role); (2) functional module (e.g., proteins located in the same pathway interact more closely). e MCODE plug-in was then applied to analyze the interactions using a molecular complex detection algorithm, and 3 module clusters were obtained ( Figure 3 ). According to the degree values, the top 10 core targets were identified as AKT1, TP53, IL-6, VEGFA, CASP3, JUN, TNF, MYC, EGFR, and PTGS2 ( Figure 3 ), whose full names are provided in Table 4 . Figure 4 shows that BPs were mainly related to cytokine-mediated signaling pathway, response to inorganic substances, response to toxic substances, response to lipopolysaccharides (LPS), reactive oxygen species (ROS) metabolic processes, positive regulation of cell death, apoptotic signaling pathway, and response to wounding. e CCs were mainly related to membrane raft and transcription factor complex. Moreover, the MFs were mainly related to protein kinase binding, transcription factor binding, cytokine receptor binding, and protein homodimerization activity ( Figure 4 ). KEGG pathway enrichment analysis screening resulted in 164 signaling pathways. Visual analysis of the top 20 pathways showed that the main signaling pathways of SCDP in the treatment of UC were concentrated in pathways in cancer, the advanced glycation end products and the receptor for AGEs (AGE-RAGE) signaling pathway in diabetic complications, bladder cancer, IL-17 signaling pathway, apoptosis, p53 signaling pathway, and phosphoinositide 3kinase (PI3K)-Akt signaling pathway ( Figure 5 ).

Construction.

e Cytoscape software was used to construct an active ingredient-core target-key pathway network, which contained 41 nodes and 108 edges ( Figure 6 ). According to the degree values (betweenness centralities and closeness centralities in the drug ingredient-target-pathway network), the main active ingredients of SCDP for UC treatment were determined to be quercetin, wogonin, baicalein, acacetin, oroxylin A, and beta-sitosterol, with the main targets being PTGS2, CASP3, TP53, IL-6, TNF, and AKT1 (Tables 5 and 6 ).

e molecular docking results indicate binding energies of less than −2 kcal/mol after docking, suggesting the formation of stable bonds between Evidence-Based Complementary and Alternative Medicine the active ingredients and predicted target proteins (Table 7) . e PyMOL software was used to visualize the docking results of key active ingredients and core targets, as shown in Figure 7 .

UC is a type of irritable bowel syndrome (IBS), and the main pathogenesis of UC is spleen deficiency as the original cause and damp-heat with stasis toxin as the superficial factors in TCM theory [28] [29] [30] . Based on the theory of TCM, UC consists of several types of syndromes, the most common of which (34.8%) being damp-heat accumulation syndrome [4, 31] . erefore, the main treatment approach is to enhance the spleen Qi and eliminate damp-heat toxin. Dampheat and stasis toxin are important factors in the recurrence of this disease [32] .

SCDP is a commonly used drug pair for eliminating damp-heat toxin. ese two herbs are also constituents of many classical formulas, such as decoctions Gegen Qinlian, Huangqin, Shaoyao, Baitouweng, Huanglian Jiedu, Banxia Xiexin, and WuMei pill, for the treatment of diarrhea as a symptom of UC, by TCMs [27] . e damp-heat insidious pathogen has been proposed as the mechanism responsible for UC recurrence, necessitating that damp-heat toxin is cleared for UC treatment. In turn, Cao et al. advocated the use of Scutellariae radix, Coptidis rhizoma, Cortex Phellodendri, Sophora flavescens, pulsatilla, ash bark, among others, in combination with dampnessdissipating drugs, such as Pogostemon cablin and eupatorium, while Y. Zhang et al. suggested the use of Coptidis rhizoma, Scutellariae radix, Cortex Phellodendri, Sophora flavescens, and pulsatilla as the main ingredients in the formulation [27, 33, 34] . To further clarify the internal mechanism of SCDP for UC treatment, we applied network pharmacology to analyze its active ingredients, targets, and pathways, thus providing ideas for future research and drug development. Figure 6 : Key ingredient-protein target-pathway network for SCDP in the treatment of ulcerative colitis. Green circles represent the Scutellariae radix as "HQ" and Coptidis rhizoma as "HL." Orange circle represents key active ingredients, while blue diamond represents key protein targets. e red V-shape represents key pathways from KEGG enrichment analysis. e area and color transparency of the node represent its degree; the darker the area and color, the more important the node. SCDP: Scutellariae radix-Coptidis rhizoma drug pair.

e results show that the key active ingredients are quercetin, wogonin, baicalein, acacetin, oroxylin A, and beta-sitosterol. Previous research discovered that quercetin inhibits the expression of LPS-induced inflammatory genes, mainly by reducing the levels of TNF-α and lipocalin-2 mRNA and enhancing the expression of the Slip protein to protect the UC mucosa [35] . It has been found that quercetin exerts a therapeutic effect in IBD by regulating the structure of the intestinal flora, inhibiting the expression of proinflammatory factors, such as IL-17, TNF-α, IL-6, and increasing the expression of IL-10 [36] .

Wogonin has strong anti-inflammatory, antitumor, antiviral and antiallergic properties. It can inhibit the activity of Treg cells, regulate the differentiation of 17 cells, and inhibit the transcription of the extracellular signal-regulated kinase (ERK), signal transducer and activator of transcription 3 (STAT3), and hypoxia-inducible factor-1α to regulate inflammatory responses [37] . One study found that 25-mg/mL wogonin can reduce the LPS-induced inflammatory response of the TLR4-MyD88-mediated NF-κB pathway in Caco-2 cells, suggesting its protective effect on the intestinal mucosal barrier [38] .

Baicalein is the main ingredient of Coptidis rhizoma. Studies have suggested its anti-inflammatory effect and discovered that it could improve the inflammatory state of UC and the control drugs [39] [40] [41] . e effect of baicalein is similar to that of the reference drug sulfasalazine and comparable to wogonin [42, 43] . In addition, baicalein reduces the levels of the inflammatory mediators IL-33 and NF-κB p65 and increases the level of IκBα to resists the pathological changes of dextran sulfate sodium (DSS)-induced UC [44] .

Acacetin (5,7-dihydroxy-4′-methoxyflavone) is an O-methylated flavone naturally present in plants like chrysanthemum and safflower, as well as in Calamintha and Linaria species. Acacetin possesses antiperoxidative, antiinflammatory, antiplasmodial, and anticancer activities. In addition, acacetin strongly inhibits the expression of proinflammatory cytokines, inducible nitric oxide synthase (iNOS), and COX-2 in LPS-induced RAW 264.7 cells [45] . Research has shown that acacetin treatment could inhibit sepsis-induced acute lung injury and reduced iNOS and COX-2 expression.

Oroxylin A and baicalein are produced as major metabolites of baicalin by the action of bacteria in the large intestine cavity. In addition, both baicalin and baicalein are converted into four new metabolites: wogonin, wogonoside, oroxylin A, and oroxin A [46] . Some studies have shown that oroxylin A is involved in the induction of autophagy and apoptosis, potentially via its regulation of p62-mediated caspase-8, which promotes the transcription of NF-κB downstream target genes and inhibits the transcription of downstream target genes of Nrf2 [47] [48] [49] .

Beta-sitosterol was found to markedly reduce weight loss, colonic length shortening, and microscopic changes in DSS-induced colitis and to reduce TNF-α, IL-6, and IL-1β levels in the intestinal tissues of experimental colitis mice in a concentration-dependent manner [50] . e core targets of SCDP in UC treatment are PTGS2 (COX2), CASP3, TP53, IL-6, TNF, and AKT1, which are associated with the TNF signaling pathway and NF-κB and oxidative stress pathways. An important target of anti-inflammatory drugs, especially nonsteroidal anti-inflammatory drugs, is prostaglandin endoperoxide synthase or COX.

ere are two subtypes of COX. COX1 is constitutively expressed and is responsible for regulating normal physiological processes. COX2 is induced under inflammatory conditions and mainly regulates the inflammatory process. It has been suggested that the expression of COX2 is induced in the colon of IBD patients but also in the inflamed tissues of IL-10-deficient IBD mouse models, and reduced COX2 is considered a major target for IBD treatment [46] .

A previous study in UC rats revealed that baicalin could up-regulate B-cell lymphoma 2 (Bcl-2) protein expression, lower Bax (also known as Bcl-2-like protein 4) protein expression, induce marked activation of the caspase-cascade system, and exhibit concentration-dependent down-regulation of Fas and Fas Ligand (FasL) protein expressions to exert therapeutic effects in UC [10] . AKT1 is a key mediator of the PI3K-Akt signaling pathway and is involved in cellular function regulation in various tumors, including gastric cancer, glioma, lung cancer, and esophageal squamous cell carcinoma [51, 52] . Berberine has been found to play a regulatory role in macrophage M1 polarization in DSS-induced colitis through the AKT1-suppressor of cytokine signaling-1 (SOCS1)-NF-κB signaling pathway [53] . IL-6 gene expression is strongly associated with IBD progression [54] . JUN is a proto-oncogene that plays a key role in inflammation, and can be activated by many inflammatory factors directly or indirectly.

e activation of JUN further modulates the expression and regulation of relevant inflammatory factors, which, in turn, participate in the regulation of the inflammatory response [55] . Being a proinflammatory regulator, TNF promotes the release of proinflammatory factors and plays an important role in the development and progression of UC. In addition, together with interferons, it alters the barrier function of intestinal epithelial cells, enhances the permeability of the intestinal mucosa and vascular wall, and disrupts the integrity of the intestinal mucosa, leading to ulcer formation [56, 57] .

GO analysis and KEGG enrichment results showed that the mechanism of SCDP in the treatment of UC was mainly related to the following pathways: pathways in cancer, PI3K-Akt signaling pathway, the AGE-RAGE signaling pathway in diabetic complications, apoptosis, IL-17 signaling pathway, and herpes simplex infection.

According to Rogler, up to 30% of the patients with chronic active UC or Crohn's disease (CD) are likely to get colorectal cancer after 35 years since the onset of the disease [58] . Chronic inflammation, the increased turnover of epithelial cells, and ROS production are thought to contribute to the development of dysplastic lesions, which may then transform into colorectal cancer [59] . Meanwhile, chronic UC status is also a major risk factor in the development of colitis-associated cancer [59] . IL-17, mainly secreted by 17 cells, is involved in inflammatory response, and its levels have been confirmed to correlate with the extent of UC disease. Acting as a proinflammatory factor, IL-23 promotes IL-17 production and forms the IL-23/17 axis to amplify the inflammatory response [60, 61] . IL-17A induces the aggregation of neutrophils on target cells, resulting in the secretion of inflammatory cytokines (IL-6, TNF-α, and IL-1B), chemokines (CXC), granulocyte colony-stimulating factor, and granulocyte-macrophage colony-stimulating factor. Meanwhile, IL-17A is also involved in the regulation of mucosal barrier function and amplification of the complete inflammatory response through the production of antimicrobial peptides, such as β-defensins, S100 β-defensins, and S100 proteins [62] . e strongest evidence comes from the genome-wide association studies that have identified IBD susceptibility single nucleotide polymorphisms in many genes involved in the IL-23/IL-17 axis [63, 64] . Other susceptibility genes in Crohn's disease and UC also appear to be involved in the IL-23/IL-17 axis. For example, STAT3, janus kinase 2 (JAK2) and tyrosine kinase 2 (TYK2) participate in IL-23 signaling, and IL-12B encodes the common subunit of IL-12 and IL-23 [61] . e mutation of the p53 gene is an important genetic alteration involved in the early stages of UC-associated colorectal cancer. e overexpression of p53 protein in the colorectal crypt of UC patients, usually in the absence of atypical hyperplasia observation of atypical hyperplasia, is used by pathologists to define the state between regenerative changes and intraepithelial neoplasia. It has been used as a biomarker in predicting the risk of progression into a malignant tumor. High-frequency mutations of p53 were reported in severe chronic UC patients with undiagnosed cancer [65] . e expression of p53 in UC patients showed a negative correlation with IL-6, which is mainly involved in the development of cancer-induced by chronic inflammation. IL-6 is the main activator of STAT3, and its stimulation products increase the transcription of target genes, as well as cell proliferation/survival. Downregulation of p53 expression is probably the most important step in the transformation of inflamed tissues and cells. Particularly, inflammatory cells that stimulate proliferation and inhibit apoptosis of cells, cytokines, chemokines, and growth factors produce ROS and reactive nitrogen species that cause oxidative DNA damage. e damage may not be adequately repaired because the p53 function is downregulated by IL-6 [66] .

In addition, TCMs may exert relevant apoptotic inhibitory effects through the upregulation of p53 and Bcl-2 expression, which is accompanied by the downregulation of TNF-α and IL-1 and the upregulation of IL-6 and IL-10. e PI3K-AKT signaling pathway is involved in the regulation and release of proinflammatory cytokines, including TNF-α and other cytokines closely related to the inflammatory response of UC [67] , and plays an important role in the development and progression of UC. TCMs inhibit transforming growth factor-β (TGF-β) expression and lead to a decrease in PI3K/AKT activation, thereby alleviating the symptoms of UC by regulating TGF-β expression [68] . AGE and RAGE are involved in and mediate various signaling pathways of oxidative stress, induce ROS production, and activate NF-κB, leading to inflammatory responses, cell apoptosis, and microvascular diseases [69] . RAGE polymorphisms and increased RAGE levels have been found in IBD patients, and the involvement of AGE/RAGE in inflammation correlates with its activation of NF-κB and its response to oxidative stress [70] . e results of molecular docking showed that quercetin, wogonin, baicalein, acacetin, oroxylin A, and beta-sitosterol, the main active ingredients of SCDP, had a good affinity to the core target genes PTGS2, CASP3, TP53, IL-6, TNF, and AKT1, suggesting that the key active ingredients of SCDP play a therapeutic role in UC by mainly intervening with the key signaling targets, such as the inflammatory response and oxidative stress. In summary, the potential biological mechanism of SCDP in the treatment of UC involves multiple ingredients, targets, and pathways, and the therapeutic effects occur through several pathways as pathways in cancer, PI3K-Akt signaling pathway, apoptosis, and IL-17 signaling pathway.

e presented study provides a scientific basis for the subsequent development and utilization of SCDP. Even so, network pharmacology has only analyzed the main active ingredients and targets of drugs, and further validation of their predicted target pathways is needed experimentally. e conclusions of this research also contribute to the research and development of drugs and further elaboration of mechanisms.

All data are fully available without restriction, and all relevant data are included within the paper. Disclosure e funders had no role in study design, in the collection, analysis, and interpretation of data, in the writing of the report, and in the decision to submit the article for publication.

e authors declare that there are no conflicts of interest regarding the publication of this article.

W., L. Z., B. S., and B. L. performed data analysis and interpretation. Y. Q. and B. Y. drafted, reviewed, and revised the manuscript. All authors read and approved the final manuscript.

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erapeutic potential of flavonoids in inflammatory bowel disease: a comprehensive review

Baicalein inhibits dextran sulfate sodium-induced mouse colitis

Baicalin may alleviate inflammatory infiltration in dextran sodium sulfate-induced chronic ulcerative colitis via inhibiting IL-33 expression

Acacetin suppressed LPS-induced up-expression of iNOS and COX-2 in murine macrophages and TPA-induced tumor promotion in mice

e comparative study of the therapeutic effects and mechanism of baicalin, baicalein, and their combination on ulcerative colitis rat

Triggering apoptosis by oroxylin A through caspase-8 activation and p62/SQSTM1 proteolysis

Molecular cross-talk between the NRF2/ KEAP1 signaling pathway, autophagy, and apoptosis

Protective effect of oroxylin A against lipopolysaccharide and/or D-galactosamine-induced acute liver injury in mice

β-Sitosterol improves experimental colitis in mice with a target against pathogenic bacteria

Decreased miRNA-637 is an unfavorable prognosis marker and promotes glioma cell growth, migration and invasion via direct targeting Akt1

Potential role of O-GlcNAcylation and involvement of PI3K/Akt1 pathway in the expression of oncogenic phenotypes of gastric cancer cellsin vitro

Berberine inhibits macrophage M1 polarization via AKT1/SOCS1/NF-κB signaling pathway to protect against DSS-induced colitis

Role of interleukin 6 in a murine model of Crohn's ileitis: are cytokine/anticytokine strategies the future for IBD therapies

Rosuvastatin suppresses the inflammatory responses through inhibition of c-Jun N-terminal kinase and nuclear factor-κb in endothelial cells

Inflammatory bowel disease: a survey of the epidemiology in Asia

Mucosal proinflammatory cytokine production correlates with endoscopic activity of ulcerative colitis

Chronic ulcerative colitis and colorectal cancer

Colonic mucosal transcriptomic changes in patients with long-duration ulcerative colitis revealed colitis-associated cancer pathways

Biological therapy targeting the IL-23/IL-17 axis in 14 Evidence-Based Complementary and Alternative Medicine inflammatory bowel disease

e IL-23/IL-17 pathway in inflammatory bowel disease

Interleukin-17 and its expanding biological functions

IL-23 in inflammatory bowel diseases and colon cancer

IL-23/IL-17 pathway in human chronic inflammatory diseases-new insight from genetics and targeted therapies

p53 expression as a diagnostic biomarker in ulcerative colitis-associated cancer

Changes in expression of p53 and inflammatory factors in patients with ulcerative colitis

PI3K/Akt signaling pathway is involved in the pathogenesis of ulcerative colitis

Costus root granules improve ulcerative colitis through regulation of TGF-β mediation of the PI3K/AKT signaling pathway

Role of AGEs-RAGE system in cardiovascular disease

e close interplay of nitro-oxidative stress, advanced glycation end products and inflammation in inflammatory bowel diseases