id sid tid token lemma pos t722h70577s 1 1 in in ADP t722h70577s 1 2 this this DET t722h70577s 1 3 doctoral doctoral ADJ t722h70577s 1 4 thesis thesis NOUN t722h70577s 1 5 , , PUNCT t722h70577s 1 6 i i PRON t722h70577s 1 7 overview overview VERB t722h70577s 1 8 the the DET t722h70577s 1 9 empirical empirical ADJ t722h70577s 1 10 and and CCONJ t722h70577s 1 11 theoretical theoretical ADJ t722h70577s 1 12 consequences consequence NOUN t722h70577s 1 13 of of ADP t722h70577s 1 14 evolution evolution NOUN t722h70577s 1 15 by by ADP t722h70577s 1 16 drift drift NOUN t722h70577s 1 17 and/or and/or CCONJ t722h70577s 1 18 natural natural ADJ t722h70577s 1 19 selection selection NOUN t722h70577s 1 20 , , PUNCT t722h70577s 1 21 as as SCONJ t722h70577s 1 22 it it PRON t722h70577s 1 23 acts act VERB t722h70577s 1 24 upon upon SCONJ t722h70577s 1 25 lineages lineage NOUN t722h70577s 1 26 during during ADP t722h70577s 1 27 ecological ecological ADJ t722h70577s 1 28 speciation speciation NOUN t722h70577s 1 29 . . PUNCT t722h70577s 2 1 then then ADV t722h70577s 2 2 , , PUNCT t722h70577s 2 3 i i PRON t722h70577s 2 4 outline outline VERB t722h70577s 2 5 the the DET t722h70577s 2 6 evolutionary evolutionary ADJ t722h70577s 2 7 divergence divergence NOUN t722h70577s 2 8 between between ADP t722h70577s 2 9 two two NUM t722h70577s 2 10 such such ADJ t722h70577s 2 11 lineages lineage NOUN t722h70577s 2 12 . . PUNCT t722h70577s 3 1 to to PART t722h70577s 3 2 address address VERB t722h70577s 3 3 my my PRON t722h70577s 3 4 questions question NOUN t722h70577s 3 5 empirically empirically ADV t722h70577s 3 6 , , PUNCT t722h70577s 3 7 i i PRON t722h70577s 3 8 utilize utilize VERB t722h70577s 3 9 genomic genomic ADJ t722h70577s 3 10 and and CCONJ t722h70577s 3 11 transcriptomic transcriptomic ADJ t722h70577s 3 12 data datum NOUN t722h70577s 3 13 applied apply VERB t722h70577s 3 14 to to ADP t722h70577s 3 15 a a DET t722h70577s 3 16 taxon taxon NOUN t722h70577s 3 17 ( ( PUNCT t722h70577s 3 18 daphnia daphnia NOUN t722h70577s 3 19 ; ; PUNCT t722h70577s 3 20 crustacea crustacea NOUN t722h70577s 3 21 : : PUNCT t722h70577s 3 22 cladocera cladocera NOUN t722h70577s 3 23 ) ) PUNCT t722h70577s 3 24 which which PRON t722h70577s 3 25 serves serve VERB t722h70577s 3 26 presently presently ADV t722h70577s 3 27 more more ADV t722h70577s 3 28 as as ADP t722h70577s 3 29 an an DET t722h70577s 3 30 ecological ecological ADJ t722h70577s 3 31 model model NOUN t722h70577s 3 32 than than ADP t722h70577s 3 33 a a DET t722h70577s 3 34 genetic genetic ADJ t722h70577s 3 35 one one NOUN t722h70577s 3 36 . . PUNCT t722h70577s 4 1 i i PRON t722h70577s 4 2 am be AUX t722h70577s 4 3 fortunate fortunate ADJ t722h70577s 4 4 to to PART t722h70577s 4 5 have have AUX t722h70577s 4 6 undertaken undertake VERB t722h70577s 4 7 the the DET t722h70577s 4 8 necessary necessary ADJ t722h70577s 4 9 research research NOUN t722h70577s 4 10 at at ADP t722h70577s 4 11 the the DET t722h70577s 4 12 present present ADJ t722h70577s 4 13 time time NOUN t722h70577s 4 14 and and CCONJ t722h70577s 4 15 place place NOUN t722h70577s 4 16 , , PUNCT t722h70577s 4 17 where where SCONJ t722h70577s 4 18 high high ADJ t722h70577s 4 19 throughput throughput NOUN t722h70577s 4 20 next next ADJ t722h70577s 4 21 - - PUNCT t722h70577s 4 22 generation generation NOUN t722h70577s 4 23 sequence sequence NOUN t722h70577s 4 24 data datum NOUN t722h70577s 4 25 could could AUX t722h70577s 4 26 be be AUX t722h70577s 4 27 generated generate VERB t722h70577s 4 28 for for ADP t722h70577s 4 29 and and CCONJ t722h70577s 4 30 meaningfully meaningfully ADV t722h70577s 4 31 applied apply VERB t722h70577s 4 32 by by ADP t722h70577s 4 33 a a DET t722h70577s 4 34 doctoral doctoral ADJ t722h70577s 4 35 student student NOUN t722h70577s 4 36 for for ADP t722h70577s 4 37 novel novel ADJ t722h70577s 4 38 purposes purpose NOUN t722h70577s 4 39 . . PUNCT t722h70577s 5 1 i i PRON t722h70577s 5 2 have have AUX t722h70577s 5 3 had have VERB t722h70577s 5 4 a a DET t722h70577s 5 5 lot lot NOUN t722h70577s 5 6 of of ADP t722h70577s 5 7 help help NOUN t722h70577s 5 8 . . PUNCT t722h70577s 6 1 what what PRON t722h70577s 6 2 follows follow VERB t722h70577s 6 3 in in ADP t722h70577s 6 4 this this DET t722h70577s 6 5 text text NOUN t722h70577s 6 6 are be AUX t722h70577s 6 7 an an DET t722h70577s 6 8 introductory introductory ADJ t722h70577s 6 9 chapter chapter NOUN t722h70577s 6 10 , , PUNCT t722h70577s 6 11 three three NUM t722h70577s 6 12 data datum NOUN t722h70577s 6 13 chapters chapter NOUN t722h70577s 6 14 , , PUNCT t722h70577s 6 15 and and CCONJ t722h70577s 6 16 a a DET t722h70577s 6 17 conclusion conclusion NOUN t722h70577s 6 18 , , PUNCT t722h70577s 6 19 concerning concern VERB t722h70577s 6 20 the the DET t722h70577s 6 21 diversity diversity NOUN t722h70577s 6 22 and and CCONJ t722h70577s 6 23 divergence divergence NOUN t722h70577s 6 24 among among ADP t722h70577s 6 25 north north PROPN t722h70577s 6 26 american american PROPN t722h70577s 6 27 daphnia daphnia PROPN t722h70577s 6 28 pulex pulex PROPN t722h70577s 6 29 and and CCONJ t722h70577s 6 30 daphnia daphnia PROPN t722h70577s 6 31 pulicaria pulicaria PROPN t722h70577s 6 32 . . PUNCT t722h70577s 7 1 in in ADP t722h70577s 7 2 the the DET t722h70577s 7 3 second second ADJ t722h70577s 7 4 chapter chapter NOUN t722h70577s 7 5 , , PUNCT t722h70577s 7 6 i i PRON t722h70577s 7 7 use use VERB t722h70577s 7 8 novel novel ADJ t722h70577s 7 9 data datum NOUN t722h70577s 7 10 to to PART t722h70577s 7 11 address address VERB t722h70577s 7 12 their their PRON t722h70577s 7 13 genomic genomic NOUN t722h70577s 7 14 divergence divergence NOUN t722h70577s 7 15 ; ; PUNCT t722h70577s 7 16 in in ADP t722h70577s 7 17 the the DET t722h70577s 7 18 third third ADJ t722h70577s 7 19 , , PUNCT t722h70577s 7 20 their their PRON t722h70577s 7 21 regulatory regulatory ADJ t722h70577s 7 22 divergence divergence NOUN t722h70577s 7 23 ; ; PUNCT t722h70577s 7 24 and and CCONJ t722h70577s 7 25 in in ADP t722h70577s 7 26 the the DET t722h70577s 7 27 fourth fourth ADJ t722h70577s 7 28 , , PUNCT t722h70577s 7 29 their their PRON t722h70577s 7 30 ongoing ongoing ADJ t722h70577s 7 31 hybridization hybridization NOUN t722h70577s 7 32 and and CCONJ t722h70577s 7 33 admixture admixture NOUN t722h70577s 7 34 . . PUNCT t722h70577s 8 1 each each DET t722h70577s 8 2 chapter chapter NOUN t722h70577s 8 3 is be AUX t722h70577s 8 4 written write VERB t722h70577s 8 5 to to PART t722h70577s 8 6 be be AUX t722h70577s 8 7 submitted submit VERB t722h70577s 8 8 as as ADP t722h70577s 8 9 a a DET t722h70577s 8 10 stand stand VERB t722h70577s 8 11 - - PUNCT t722h70577s 8 12 alone alone ADV t722h70577s 8 13 manuscript manuscript NOUN t722h70577s 8 14 for for ADP t722h70577s 8 15 publication publication NOUN t722h70577s 8 16 in in ADP t722h70577s 8 17 a a DET t722h70577s 8 18 peer peer NOUN t722h70577s 8 19 - - PUNCT t722h70577s 8 20 reviewed review VERB t722h70577s 8 21 scientific scientific ADJ t722h70577s 8 22 journal journal NOUN t722h70577s 8 23 . . PUNCT t722h70577s 9 1 herein herein ADV t722h70577s 9 2 , , PUNCT t722h70577s 9 3 their their PRON t722h70577s 9 4 content content NOUN t722h70577s 9 5 is be AUX t722h70577s 9 6 presented present VERB t722h70577s 9 7 as as ADP t722h70577s 9 8 a a DET t722h70577s 9 9 dissertation dissertation NOUN t722h70577s 9 10 for for ADP t722h70577s 9 11 the the DET t722h70577s 9 12 partial partial ADJ t722h70577s 9 13 fulfillment fulfillment NOUN t722h70577s 9 14 of of ADP t722h70577s 9 15 the the DET t722h70577s 9 16 requirements requirement NOUN t722h70577s 9 17 for for ADP t722h70577s 9 18 the the DET t722h70577s 9 19 degree degree NOUN t722h70577s 9 20 of of ADP t722h70577s 9 21 doctor doctor NOUN t722h70577s 9 22 of of ADP t722h70577s 9 23 philosophy philosophy NOUN t722h70577s 9 24 from from ADP t722h70577s 9 25 the the DET t722h70577s 9 26 university university PROPN t722h70577s 9 27 of of ADP t722h70577s 9 28 notre notre PROPN t722h70577s 9 29 dame dame NOUN t722h70577s 9 30 . . PUNCT t722h70577s 10 1 finally finally ADV t722h70577s 10 2 , , PUNCT t722h70577s 10 3 i i PRON t722h70577s 10 4 offer offer VERB t722h70577s 10 5 my my PRON t722h70577s 10 6 concluding concluding NOUN t722h70577s 10 7 remarks remark NOUN t722h70577s 10 8 upon upon SCONJ t722h70577s 10 9 completion completion NOUN t722h70577s 10 10 of of ADP t722h70577s 10 11 this this DET t722h70577s 10 12 research research NOUN t722h70577s 10 13 , , PUNCT t722h70577s 10 14 concerning concern VERB t722h70577s 10 15 the the DET t722h70577s 10 16 state state NOUN t722h70577s 10 17 of of ADP t722h70577s 10 18 biology biology NOUN t722h70577s 10 19 as as ADP t722h70577s 10 20 a a DET t722h70577s 10 21 field field NOUN t722h70577s 10 22 , , PUNCT t722h70577s 10 23 and and CCONJ t722h70577s 10 24 the the DET t722h70577s 10 25 immense immense ADJ t722h70577s 10 26 opportunities opportunity NOUN t722h70577s 10 27 that that PRON t722h70577s 10 28 exist exist VERB t722h70577s 10 29 going go VERB t722h70577s 10 30 forward forward ADV t722h70577s 10 31 . . PUNCT