id	sid	tid	token	lemma	pos
n009w091c7n	1	1	bacterial	bacterial	ADJ
n009w091c7n	1	2	cell	cell	NOUN
n009w091c7n	1	3	walls	wall	NOUN
n009w091c7n	1	4	can	can	AUX
n009w091c7n	1	5	adsorb	adsorb	VERB
n009w091c7n	1	6	a	a	DET
n009w091c7n	1	7	wide	wide	ADJ
n009w091c7n	1	8	range	range	NOUN
n009w091c7n	1	9	of	of	ADP
n009w091c7n	1	10	metal	metal	NOUN
n009w091c7n	1	11	cations	cation	NOUN
n009w091c7n	1	12	,	,	PUNCT
n009w091c7n	1	13	potentially	potentially	ADV
n009w091c7n	1	14	altering	alter	VERB
n009w091c7n	1	15	the	the	DET
n009w091c7n	1	16	mobility	mobility	NOUN
n009w091c7n	1	17	of	of	ADP
n009w091c7n	1	18	the	the	DET
n009w091c7n	1	19	metals	metal	NOUN
n009w091c7n	1	20	in	in	ADP
n009w091c7n	1	21	geologic	geologic	ADJ
n009w091c7n	1	22	systems	system	NOUN
n009w091c7n	1	23	.	.	PUNCT
n009w091c7n	2	1	to	to	PART
n009w091c7n	2	2	constrain	constrain	VERB
n009w091c7n	2	3	and	and	CCONJ
n009w091c7n	2	4	mitigate	mitigate	VERB
n009w091c7n	2	5	contaminant	contaminant	ADJ
n009w091c7n	2	6	transport	transport	NOUN
n009w091c7n	2	7	it	it	PRON
n009w091c7n	2	8	is	be	AUX
n009w091c7n	2	9	essential	essential	ADJ
n009w091c7n	2	10	that	that	SCONJ
n009w091c7n	2	11	geochemical	geochemical	ADJ
n009w091c7n	2	12	models	model	NOUN
n009w091c7n	2	13	be	be	AUX
n009w091c7n	2	14	developed	develop	VERB
n009w091c7n	2	15	to	to	PART
n009w091c7n	2	16	measure	measure	VERB
n009w091c7n	2	17	and	and	CCONJ
n009w091c7n	2	18	quantify	quantify	VERB
n009w091c7n	2	19	adsorption	adsorption	NOUN
n009w091c7n	2	20	of	of	ADP
n009w091c7n	2	21	heavy	heavy	ADJ
n009w091c7n	2	22	metals	metal	NOUN
n009w091c7n	2	23	onto	onto	ADP
n009w091c7n	2	24	bacteria	bacteria	NOUN
n009w091c7n	2	25	.	.	PUNCT
n009w091c7n	3	1	this	this	DET
n009w091c7n	3	2	dissertation	dissertation	NOUN
n009w091c7n	3	3	presents	present	VERB
n009w091c7n	3	4	the	the	DET
n009w091c7n	3	5	work	work	NOUN
n009w091c7n	3	6	of	of	ADP
n009w091c7n	3	7	three	three	NUM
n009w091c7n	3	8	studies	study	NOUN
n009w091c7n	3	9	that	that	PRON
n009w091c7n	3	10	apply	apply	VERB
n009w091c7n	3	11	molecular	molecular	ADJ
n009w091c7n	3	12	simulations	simulation	NOUN
n009w091c7n	3	13	(	(	PUNCT
n009w091c7n	3	14	ch	ch	PROPN
n009w091c7n	3	15	.	.	PROPN
n009w091c7n	3	16	2	2	NUM
n009w091c7n	3	17	)	)	PUNCT
n009w091c7n	3	18	and	and	CCONJ
n009w091c7n	3	19	surface	surface	NOUN
n009w091c7n	3	20	complexation	complexation	NOUN
n009w091c7n	3	21	modeling	modeling	NOUN
n009w091c7n	3	22	(	(	PUNCT
n009w091c7n	3	23	ch	ch	PROPN
n009w091c7n	3	24	.	.	PROPN
n009w091c7n	3	25	3	3	NUM
n009w091c7n	3	26	&	&	CCONJ
n009w091c7n	3	27	4	4	NUM
n009w091c7n	3	28	)	)	PUNCT
n009w091c7n	3	29	to	to	PART
n009w091c7n	3	30	improve	improve	VERB
n009w091c7n	3	31	our	our	PRON
n009w091c7n	3	32	understanding	understanding	NOUN
n009w091c7n	3	33	of	of	ADP
n009w091c7n	3	34	metal	metal	NOUN
n009w091c7n	3	35	-	-	PUNCT
n009w091c7n	3	36	bacterial	bacterial	ADJ
n009w091c7n	3	37	adsorption	adsorption	NOUN
n009w091c7n	3	38	reactions	reaction	NOUN
n009w091c7n	3	39	.	.	PUNCT
n009w091c7n	4	1	simulation	simulation	NOUN
n009w091c7n	4	2	models	model	NOUN
n009w091c7n	4	3	(	(	PUNCT
n009w091c7n	4	4	ch	ch	PROPN
n009w091c7n	4	5	.	.	PROPN
n009w091c7n	4	6	2	2	X
n009w091c7n	4	7	)	)	PUNCT
n009w091c7n	4	8	enabled	enable	VERB
n009w091c7n	4	9	us	we	PRON
n009w091c7n	4	10	to	to	PART
n009w091c7n	4	11	estimate	estimate	VERB
n009w091c7n	4	12	the	the	DET
n009w091c7n	4	13	most	most	ADV
n009w091c7n	4	14	stable	stable	ADJ
n009w091c7n	4	15	configuration	configuration	NOUN
n009w091c7n	4	16	for	for	ADP
n009w091c7n	4	17	bacterial	bacterial	ADJ
n009w091c7n	4	18	surface	surface	NOUN
n009w091c7n	4	19	complexes	complex	NOUN
n009w091c7n	4	20	and	and	CCONJ
n009w091c7n	4	21	to	to	PART
n009w091c7n	4	22	compare	compare	VERB
n009w091c7n	4	23	binding	bind	VERB
n009w091c7n	4	24	affinities	affinity	NOUN
n009w091c7n	4	25	and	and	CCONJ
n009w091c7n	4	26	interatomic	interatomic	ADJ
n009w091c7n	4	27	distances	distance	NOUN
n009w091c7n	4	28	with	with	ADP
n009w091c7n	4	29	experimental	experimental	ADJ
n009w091c7n	4	30	values	value	NOUN
n009w091c7n	4	31	to	to	PART
n009w091c7n	4	32	validate	validate	VERB
n009w091c7n	4	33	and	and	CCONJ
n009w091c7n	4	34	predict	predict	VERB
n009w091c7n	4	35	metal	metal	NOUN
n009w091c7n	4	36	adsorption	adsorption	NOUN
n009w091c7n	4	37	behavior	behavior	NOUN
n009w091c7n	4	38	.	.	PUNCT
n009w091c7n	5	1	we	we	PRON
n009w091c7n	5	2	found	find	VERB
n009w091c7n	5	3	that	that	SCONJ
n009w091c7n	5	4	mechanics	mechanic	NOUN
n009w091c7n	5	5	-	-	PUNCT
n009w091c7n	5	6	based	base	VERB
n009w091c7n	5	7	simulations	simulation	NOUN
n009w091c7n	5	8	adequately	adequately	ADV
n009w091c7n	5	9	describe	describe	VERB
n009w091c7n	5	10	the	the	DET
n009w091c7n	5	11	interactions	interaction	NOUN
n009w091c7n	5	12	of	of	ADP
n009w091c7n	5	13	cd	cd	PROPN
n009w091c7n	5	14	with	with	ADP
n009w091c7n	5	15	the	the	DET
n009w091c7n	5	16	cell	cell	NOUN
n009w091c7n	5	17	wall	wall	NOUN
n009w091c7n	5	18	,	,	PUNCT
n009w091c7n	5	19	defining	define	VERB
n009w091c7n	5	20	metal	metal	NOUN
n009w091c7n	5	21	ion	ion	NOUN
n009w091c7n	5	22	coordinations	coordination	NOUN
n009w091c7n	5	23	and	and	CCONJ
n009w091c7n	5	24	binding	binding	ADJ
n009w091c7n	5	25	distances	distance	NOUN
n009w091c7n	5	26	.	.	PUNCT
n009w091c7n	6	1	however	however	ADV
n009w091c7n	6	2	,	,	PUNCT
n009w091c7n	6	3	this	this	DET
n009w091c7n	6	4	approach	approach	NOUN
n009w091c7n	6	5	does	do	AUX
n009w091c7n	6	6	not	not	PART
n009w091c7n	6	7	accurately	accurately	ADV
n009w091c7n	6	8	describe	describe	VERB
n009w091c7n	6	9	pb	pb	PROPN
n009w091c7n	6	10	-	-	PUNCT
n009w091c7n	6	11	cell	cell	NOUN
n009w091c7n	6	12	wall	wall	PROPN
n009w091c7n	6	13	interactions	interaction	NOUN
n009w091c7n	6	14	,	,	PUNCT
n009w091c7n	6	15	possibly	possibly	ADV
n009w091c7n	6	16	due	due	ADP
n009w091c7n	6	17	to	to	ADP
n009w091c7n	6	18	limitations	limitation	NOUN
n009w091c7n	6	19	in	in	ADP
n009w091c7n	6	20	the	the	DET
n009w091c7n	6	21	simulation	simulation	NOUN
n009w091c7n	6	22	parameters	parameter	NOUN
n009w091c7n	6	23	,	,	PUNCT
n009w091c7n	6	24	the	the	DET
n009w091c7n	6	25	propensity	propensity	NOUN
n009w091c7n	6	26	for	for	SCONJ
n009w091c7n	6	27	pb	pb	PROPN
n009w091c7n	6	28	to	to	PART
n009w091c7n	6	29	form	form	VERB
n009w091c7n	6	30	hydroxides	hydroxide	NOUN
n009w091c7n	6	31	at	at	ADP
n009w091c7n	6	32	circumneutral	circumneutral	ADJ
n009w091c7n	6	33	ph	ph	NOUN
n009w091c7n	6	34	,	,	PUNCT
n009w091c7n	6	35	or	or	CCONJ
n009w091c7n	6	36	other	other	ADJ
n009w091c7n	6	37	adsorption	adsorption	NOUN
n009w091c7n	6	38	mechanisms	mechanism	NOUN
n009w091c7n	6	39	.	.	PUNCT
n009w091c7n	7	1	we	we	PRON
n009w091c7n	7	2	studied	study	VERB
n009w091c7n	7	3	the	the	DET
n009w091c7n	7	4	effect	effect	NOUN
n009w091c7n	7	5	of	of	ADP
n009w091c7n	7	6	bacterial	bacterial	ADJ
n009w091c7n	7	7	metabolism	metabolism	NOUN
n009w091c7n	7	8	(	(	PUNCT
n009w091c7n	7	9	ch	ch	PROPN
n009w091c7n	7	10	.	.	PROPN
n009w091c7n	7	11	3	3	NUM
n009w091c7n	7	12	)	)	PUNCT
n009w091c7n	7	13	on	on	ADP
n009w091c7n	7	14	the	the	DET
n009w091c7n	7	15	extent	extent	NOUN
n009w091c7n	7	16	of	of	ADP
n009w091c7n	7	17	cd	cd	PROPN
n009w091c7n	7	18	adsorption	adsorption	NOUN
n009w091c7n	7	19	to	to	ADP
n009w091c7n	7	20	gram	gram	NOUN
n009w091c7n	7	21	-	-	PUNCT
n009w091c7n	7	22	positive	positive	ADJ
n009w091c7n	7	23	and	and	CCONJ
n009w091c7n	7	24	gram	gram	ADJ
n009w091c7n	7	25	-	-	PUNCT
n009w091c7n	7	26	negative	negative	ADJ
n009w091c7n	7	27	bacteria	bacteria	NOUN
n009w091c7n	7	28	.	.	PUNCT
n009w091c7n	8	1	we	we	PRON
n009w091c7n	8	2	found	find	VERB
n009w091c7n	8	3	that	that	SCONJ
n009w091c7n	8	4	while	while	SCONJ
n009w091c7n	8	5	metabolically	metabolically	ADV
n009w091c7n	8	6	-	-	PUNCT
n009w091c7n	8	7	active	active	ADJ
n009w091c7n	8	8	gram	gram	ADJ
n009w091c7n	8	9	-	-	PUNCT
n009w091c7n	8	10	positive	positive	ADJ
n009w091c7n	8	11	cells	cell	NOUN
n009w091c7n	8	12	adsorb	adsorb	VERB
n009w091c7n	8	13	significantly	significantly	ADV
n009w091c7n	8	14	less	less	ADJ
n009w091c7n	8	15	cd	cd	NOUN
n009w091c7n	8	16	than	than	ADP
n009w091c7n	8	17	non	non	ADJ
n009w091c7n	8	18	-	-	ADJ
n009w091c7n	8	19	metabolizing	metabolizing	ADJ
n009w091c7n	8	20	cells	cell	NOUN
n009w091c7n	8	21	,	,	PUNCT
n009w091c7n	8	22	gram	gram	NOUN
n009w091c7n	8	23	-	-	PUNCT
n009w091c7n	8	24	negative	negative	ADJ
n009w091c7n	8	25	cells	cell	NOUN
n009w091c7n	8	26	show	show	VERB
n009w091c7n	8	27	little	little	ADJ
n009w091c7n	8	28	difference	difference	NOUN
n009w091c7n	8	29	in	in	ADP
n009w091c7n	8	30	cd	cd	PROPN
n009w091c7n	8	31	adsorption	adsorption	NOUN
n009w091c7n	8	32	.	.	PUNCT
n009w091c7n	9	1	the	the	DET
n009w091c7n	9	2	metabolic	metabolic	ADJ
n009w091c7n	9	3	effect	effect	NOUN
n009w091c7n	9	4	on	on	ADP
n009w091c7n	9	5	adsorption	adsorption	NOUN
n009w091c7n	9	6	for	for	ADP
n009w091c7n	9	7	gram	gram	ADJ
n009w091c7n	9	8	-	-	PUNCT
n009w091c7n	9	9	positive	positive	ADJ
n009w091c7n	9	10	cells	cell	NOUN
n009w091c7n	9	11	is	be	AUX
n009w091c7n	9	12	likely	likely	ADJ
n009w091c7n	9	13	due	due	ADJ
n009w091c7n	9	14	to	to	ADP
n009w091c7n	9	15	the	the	DET
n009w091c7n	9	16	proton	proton	NOUN
n009w091c7n	9	17	motive	motive	ADJ
n009w091c7n	9	18	force	force	NOUN
n009w091c7n	9	19	.	.	PUNCT
n009w091c7n	10	1	the	the	DET
n009w091c7n	10	2	lack	lack	NOUN
n009w091c7n	10	3	of	of	ADP
n009w091c7n	10	4	effect	effect	NOUN
n009w091c7n	10	5	in	in	ADP
n009w091c7n	10	6	gram	gram	ADJ
n009w091c7n	10	7	-	-	PUNCT
n009w091c7n	10	8	negative	negative	ADJ
n009w091c7n	10	9	cells	cell	NOUN
n009w091c7n	10	10	suggests	suggest	VERB
n009w091c7n	10	11	that	that	SCONJ
n009w091c7n	10	12	cd	cd	PROPN
n009w091c7n	10	13	adsorption	adsorption	NOUN
n009w091c7n	10	14	occurs	occur	VERB
n009w091c7n	10	15	in	in	ADP
n009w091c7n	10	16	a	a	DET
n009w091c7n	10	17	region	region	NOUN
n009w091c7n	10	18	of	of	ADP
n009w091c7n	10	19	the	the	DET
n009w091c7n	10	20	cell	cell	NOUN
n009w091c7n	10	21	wall	wall	NOUN
n009w091c7n	10	22	not	not	PART
n009w091c7n	10	23	affected	affect	VERB
n009w091c7n	10	24	by	by	ADP
n009w091c7n	10	25	proton	proton	NOUN
n009w091c7n	10	26	motive	motive	ADJ
n009w091c7n	10	27	force	force	NOUN
n009w091c7n	10	28	.	.	PUNCT
n009w091c7n	11	1	we	we	PRON
n009w091c7n	11	2	use	use	VERB
n009w091c7n	11	3	a	a	DET
n009w091c7n	11	4	thermodynamic	thermodynamic	ADJ
n009w091c7n	11	5	modeling	modeling	NOUN
n009w091c7n	11	6	approach	approach	NOUN
n009w091c7n	11	7	to	to	PART
n009w091c7n	11	8	estimate	estimate	VERB
n009w091c7n	11	9	that	that	SCONJ
n009w091c7n	11	10	the	the	DET
n009w091c7n	11	11	effect	effect	NOUN
n009w091c7n	11	12	of	of	ADP
n009w091c7n	11	13	the	the	DET
n009w091c7n	11	14	proton	proton	NOUN
n009w091c7n	11	15	motive	motive	ADJ
n009w091c7n	11	16	force	force	NOUN
n009w091c7n	11	17	lowers	lower	VERB
n009w091c7n	11	18	the	the	DET
n009w091c7n	11	19	ph	ph	NOUN
n009w091c7n	11	20	at	at	ADP
n009w091c7n	11	21	the	the	DET
n009w091c7n	11	22	cell	cell	NOUN
n009w091c7n	11	23	wall	wall	NOUN
n009w091c7n	11	24	from	from	ADP
n009w091c7n	11	25	7.0	7.0	NUM
n009w091c7n	11	26	to	to	ADP
n009w091c7n	11	27	5.7	5.7	NUM
n009w091c7n	11	28	.	.	PUNCT
n009w091c7n	12	1	we	we	PRON
n009w091c7n	12	2	applied	apply	VERB
n009w091c7n	12	3	potentiometric	potentiometric	ADJ
n009w091c7n	12	4	titrations	titration	NOUN
n009w091c7n	12	5	and	and	CCONJ
n009w091c7n	12	6	metal	metal	NOUN
n009w091c7n	12	7	adsorption	adsorption	NOUN
n009w091c7n	12	8	experiments	experiment	NOUN
n009w091c7n	12	9	(	(	PUNCT
n009w091c7n	12	10	ch	ch	PROPN
n009w091c7n	12	11	.	.	PROPN
n009w091c7n	12	12	4	4	NUM
n009w091c7n	12	13	)	)	PUNCT
n009w091c7n	12	14	and	and	CCONJ
n009w091c7n	12	15	found	find	VERB
n009w091c7n	12	16	that	that	SCONJ
n009w091c7n	12	17	changes	change	NOUN
n009w091c7n	12	18	in	in	ADP
n009w091c7n	12	19	bacterial	bacterial	ADJ
n009w091c7n	12	20	diversity	diversity	NOUN
n009w091c7n	12	21	do	do	AUX
n009w091c7n	12	22	not	not	PART
n009w091c7n	12	23	impact	impact	VERB
n009w091c7n	12	24	proton	proton	NOUN
n009w091c7n	12	25	and	and	CCONJ
n009w091c7n	12	26	metal	metal	NOUN
n009w091c7n	12	27	uptake	uptake	NOUN
n009w091c7n	12	28	of	of	ADP
n009w091c7n	12	29	consortia	consortium	NOUN
n009w091c7n	12	30	grown	grow	VERB
n009w091c7n	12	31	from	from	ADP
n009w091c7n	12	32	three	three	NUM
n009w091c7n	12	33	locations	location	NOUN
n009w091c7n	12	34	and	and	CCONJ
n009w091c7n	12	35	sampled	sample	VERB
n009w091c7n	12	36	throughout	throughout	ADP
n009w091c7n	12	37	a	a	DET
n009w091c7n	12	38	year	year	NOUN
n009w091c7n	12	39	,	,	PUNCT
n009w091c7n	12	40	strongly	strongly	ADV
n009w091c7n	12	41	suggesting	suggest	VERB
n009w091c7n	12	42	universal	universal	ADJ
n009w091c7n	12	43	adsorption	adsorption	NOUN
n009w091c7n	12	44	behavior	behavior	NOUN
n009w091c7n	12	45	for	for	ADP
n009w091c7n	12	46	the	the	DET
n009w091c7n	12	47	species	specie	NOUN
n009w091c7n	12	48	present	present	ADJ
n009w091c7n	12	49	.	.	PUNCT
n009w091c7n	13	1	applying	apply	VERB
n009w091c7n	13	2	an	an	DET
n009w091c7n	13	3	averaged	average	VERB
n009w091c7n	13	4	-	-	PUNCT
n009w091c7n	13	5	site	site	NOUN
n009w091c7n	13	6	surface	surface	NOUN
n009w091c7n	13	7	complexation	complexation	NOUN
n009w091c7n	13	8	model	model	NOUN
n009w091c7n	13	9	we	we	PRON
n009w091c7n	13	10	found	find	VERB
n009w091c7n	13	11	a	a	DET
n009w091c7n	13	12	single	single	ADJ
n009w091c7n	13	13	set	set	NOUN
n009w091c7n	13	14	of	of	ADP
n009w091c7n	13	15	averaged	average	VERB
n009w091c7n	13	16	acidity	acidity	NOUN
n009w091c7n	13	17	constants	constant	NOUN
n009w091c7n	13	18	,	,	PUNCT
n009w091c7n	13	19	site	site	NOUN
n009w091c7n	13	20	concentrations	concentration	NOUN
n009w091c7n	13	21	,	,	PUNCT
n009w091c7n	13	22	and	and	CCONJ
n009w091c7n	13	23	stability	stability	NOUN
n009w091c7n	13	24	constants	constant	NOUN
n009w091c7n	13	25	for	for	ADP
n009w091c7n	13	26	metal	metal	NOUN
n009w091c7n	13	27	-	-	PUNCT
n009w091c7n	13	28	bacterial	bacterial	ADJ
n009w091c7n	13	29	surface	surface	NOUN
n009w091c7n	13	30	complexes	complex	NOUN
n009w091c7n	13	31	that	that	PRON
n009w091c7n	13	32	can	can	AUX
n009w091c7n	13	33	be	be	AUX
n009w091c7n	13	34	used	use	VERB
n009w091c7n	13	35	to	to	PART
n009w091c7n	13	36	model	model	VERB
n009w091c7n	13	37	the	the	DET
n009w091c7n	13	38	adsorption	adsorption	NOUN
n009w091c7n	13	39	behavior	behavior	NOUN
n009w091c7n	13	40	.	.	PUNCT