id	sid	tid	token	lemma	pos
kd17cr58w85	1	1	a	a	DET
kd17cr58w85	1	2	goal	goal	NOUN
kd17cr58w85	1	3	of	of	ADP
kd17cr58w85	1	4	contemporary	contemporary	ADJ
kd17cr58w85	1	5	proteome	proteome	NOUN
kd17cr58w85	1	6	research	research	NOUN
kd17cr58w85	1	7	is	be	AUX
kd17cr58w85	1	8	the	the	DET
kd17cr58w85	1	9	elucidation	elucidation	NOUN
kd17cr58w85	1	10	of	of	ADP
kd17cr58w85	1	11	protein	protein	NOUN
kd17cr58w85	1	12	-	-	PUNCT
kd17cr58w85	1	13	protein	protein	NOUN
kd17cr58w85	1	14	interactions	interaction	NOUN
kd17cr58w85	1	15	in	in	ADP
kd17cr58w85	1	16	a	a	DET
kd17cr58w85	1	17	cell	cell	NOUN
kd17cr58w85	1	18	.	.	PUNCT
kd17cr58w85	2	1	based	base	VERB
kd17cr58w85	2	2	on	on	ADP
kd17cr58w85	2	3	currently	currently	ADV
kd17cr58w85	2	4	available	available	ADJ
kd17cr58w85	2	5	protein	protein	NOUN
kd17cr58w85	2	6	-	-	PUNCT
kd17cr58w85	2	7	protein	protein	NOUN
kd17cr58w85	2	8	interaction	interaction	NOUN
kd17cr58w85	2	9	and	and	CCONJ
kd17cr58w85	2	10	domain	domain	NOUN
kd17cr58w85	2	11	data	datum	NOUN
kd17cr58w85	2	12	of	of	ADP
kd17cr58w85	2	13	s.	s.	PROPN
kd17cr58w85	2	14	cerevisiae	cerevisiae	NOUN
kd17cr58w85	2	15	,	,	PUNCT
kd17cr58w85	2	16	we	we	PRON
kd17cr58w85	2	17	introduce	introduce	VERB
kd17cr58w85	2	18	a	a	DET
kd17cr58w85	2	19	novel	novel	ADJ
kd17cr58w85	2	20	method	method	NOUN
kd17cr58w85	2	21	,	,	PUNCT
kd17cr58w85	2	22	maximum	maximum	ADJ
kd17cr58w85	2	23	specificity	specificity	NOUN
kd17cr58w85	2	24	set	set	NOUN
kd17cr58w85	2	25	cover	cover	NOUN
kd17cr58w85	2	26	(	(	PUNCT
kd17cr58w85	2	27	mssc	mssc	X
kd17cr58w85	2	28	)	)	PUNCT
kd17cr58w85	2	29	,	,	PUNCT
kd17cr58w85	2	30	to	to	PART
kd17cr58w85	2	31	predict	predict	VERB
kd17cr58w85	2	32	protein	protein	NOUN
kd17cr58w85	2	33	-	-	PUNCT
kd17cr58w85	2	34	protein	protein	NOUN
kd17cr58w85	2	35	interactions	interaction	NOUN
kd17cr58w85	2	36	.	.	PUNCT
kd17cr58w85	3	1	mssc	mssc	PROPN
kd17cr58w85	3	2	features	feature	VERB
kd17cr58w85	3	3	three	three	NUM
kd17cr58w85	3	4	stages	stage	NOUN
kd17cr58w85	3	5	:	:	PUNCT
kd17cr58w85	3	6	first	first	ADV
kd17cr58w85	3	7	,	,	PUNCT
kd17cr58w85	3	8	mssc	mssc	PROPN
kd17cr58w85	3	9	selects	select	VERB
kd17cr58w85	3	10	high	high	ADJ
kd17cr58w85	3	11	quality	quality	NOUN
kd17cr58w85	3	12	protein	protein	NOUN
kd17cr58w85	3	13	-	-	PUNCT
kd17cr58w85	3	14	protein	protein	NOUN
kd17cr58w85	3	15	interactions	interaction	NOUN
kd17cr58w85	3	16	based	base	VERB
kd17cr58w85	3	17	on	on	ADP
kd17cr58w85	3	18	a	a	DET
kd17cr58w85	3	19	clustering	clustering	NOUN
kd17cr58w85	3	20	measure	measure	NOUN
kd17cr58w85	3	21	.	.	PUNCT
kd17cr58w85	4	1	second	second	ADV
kd17cr58w85	4	2	,	,	PUNCT
kd17cr58w85	4	3	mssc	mssc	VERB
kd17cr58w85	4	4	assigns	assign	VERB
kd17cr58w85	4	5	probabilities	probability	NOUN
kd17cr58w85	4	6	to	to	PART
kd17cr58w85	4	7	domain	domain	VERB
kd17cr58w85	4	8	pairs	pair	NOUN
kd17cr58w85	4	9	.	.	PUNCT
kd17cr58w85	5	1	third	third	ADJ
kd17cr58w85	5	2	,	,	PUNCT
kd17cr58w85	5	3	mssc	mssc	PROPN
kd17cr58w85	5	4	uses	use	VERB
kd17cr58w85	5	5	the	the	DET
kd17cr58w85	5	6	domain	domain	NOUN
kd17cr58w85	5	7	pairs	pair	NOUN
kd17cr58w85	5	8	to	to	PART
kd17cr58w85	5	9	infer	infer	VERB
kd17cr58w85	5	10	protein	protein	NOUN
kd17cr58w85	5	11	-	-	PUNCT
kd17cr58w85	5	12	protein	protein	NOUN
kd17cr58w85	5	13	interactions	interaction	NOUN
kd17cr58w85	5	14	.	.	PUNCT
kd17cr58w85	6	1	we	we	PRON
kd17cr58w85	6	2	also	also	ADV
kd17cr58w85	6	3	modified	modify	VERB
kd17cr58w85	6	4	mssc	mssc	PROPN
kd17cr58w85	6	5	to	to	PART
kd17cr58w85	6	6	include	include	VERB
kd17cr58w85	6	7	the	the	DET
kd17cr58w85	6	8	possibility	possibility	NOUN
kd17cr58w85	6	9	of	of	ADP
kd17cr58w85	6	10	having	have	VERB
kd17cr58w85	6	11	more	more	ADJ
kd17cr58w85	6	12	than	than	ADP
kd17cr58w85	6	13	one	one	NUM
kd17cr58w85	6	14	domain	domain	NOUN
kd17cr58w85	6	15	from	from	ADP
kd17cr58w85	6	16	each	each	DET
kd17cr58w85	6	17	protein	protein	NOUN
kd17cr58w85	6	18	causing	cause	VERB
kd17cr58w85	6	19	the	the	DET
kd17cr58w85	6	20	protein	protein	NOUN
kd17cr58w85	6	21	-	-	PUNCT
kd17cr58w85	6	22	protein	protein	NOUN
kd17cr58w85	6	23	interaction	interaction	NOUN
kd17cr58w85	6	24	.	.	PUNCT
kd17cr58w85	7	1	mssc	mssc	PROPN
kd17cr58w85	7	2	allows	allow	VERB
kd17cr58w85	7	3	us	we	PRON
kd17cr58w85	7	4	to	to	PART
kd17cr58w85	7	5	predict	predict	VERB
kd17cr58w85	7	6	previously	previously	ADV
kd17cr58w85	7	7	unknown	unknown	ADJ
kd17cr58w85	7	8	protein	protein	NOUN
kd17cr58w85	7	9	-	-	PUNCT
kd17cr58w85	7	10	protein	protein	NOUN
kd17cr58w85	7	11	interactions	interaction	NOUN
kd17cr58w85	7	12	with	with	ADP
kd17cr58w85	7	13	a	a	DET
kd17cr58w85	7	14	degree	degree	NOUN
kd17cr58w85	7	15	of	of	ADP
kd17cr58w85	7	16	sensitivity	sensitivity	NOUN
kd17cr58w85	7	17	and	and	CCONJ
kd17cr58w85	7	18	specificity	specificity	NOUN
kd17cr58w85	7	19	that	that	PRON
kd17cr58w85	7	20	clearly	clearly	ADV
kd17cr58w85	7	21	out	out	ADV
kd17cr58w85	7	22	-	-	PUNCT
kd17cr58w85	7	23	scores	score	NOUN
kd17cr58w85	7	24	other	other	ADJ
kd17cr58w85	7	25	approaches	approach	NOUN
kd17cr58w85	7	26	.	.	PUNCT
kd17cr58w85	8	1	mssc	mssc	PROPN
kd17cr58w85	8	2	achieved	achieve	VERB
kd17cr58w85	8	3	86	86	NUM
kd17cr58w85	8	4	%	%	NOUN
kd17cr58w85	8	5	sensitivity	sensitivity	NOUN
kd17cr58w85	8	6	and	and	CCONJ
kd17cr58w85	8	7	62	62	NUM
kd17cr58w85	8	8	%	%	NOUN
kd17cr58w85	8	9	specificity	specificity	NOUN
kd17cr58w85	8	10	using	use	VERB
kd17cr58w85	8	11	80	80	NUM
kd17cr58w85	8	12	%	%	NOUN
kd17cr58w85	8	13	of	of	ADP
kd17cr58w85	8	14	the	the	DET
kd17cr58w85	8	15	high	high	ADJ
kd17cr58w85	8	16	quality	quality	NOUN
kd17cr58w85	8	17	interactions	interaction	NOUN
kd17cr58w85	8	18	in	in	ADP
kd17cr58w85	8	19	the	the	DET
kd17cr58w85	8	20	dip	dip	NOUN
kd17cr58w85	8	21	database	database	NOUN
kd17cr58w85	8	22	.	.	PUNCT
kd17cr58w85	9	1	the	the	DET
kd17cr58w85	9	2	predicted	predict	VERB
kd17cr58w85	9	3	interaction	interaction	NOUN
kd17cr58w85	9	4	network	network	NOUN
kd17cr58w85	9	5	preserves	preserve	VERB
kd17cr58w85	9	6	the	the	DET
kd17cr58w85	9	7	characteristics	characteristic	NOUN
kd17cr58w85	9	8	of	of	ADP
kd17cr58w85	9	9	the	the	DET
kd17cr58w85	9	10	initial	initial	ADJ
kd17cr58w85	9	11	web	web	NOUN
kd17cr58w85	9	12	of	of	ADP
kd17cr58w85	9	13	known	know	VERB
kd17cr58w85	9	14	protein	protein	NOUN
kd17cr58w85	9	15	interactions	interaction	NOUN
kd17cr58w85	9	16	.	.	PUNCT
kd17cr58w85	10	1	we	we	PRON
kd17cr58w85	10	2	also	also	ADV
kd17cr58w85	10	3	observe	observe	VERB
kd17cr58w85	10	4	high	high	ADJ
kd17cr58w85	10	5	levels	level	NOUN
kd17cr58w85	10	6	of	of	ADP
kd17cr58w85	10	7	co	co	NOUN
kd17cr58w85	10	8	-	-	NOUN
kd17cr58w85	10	9	expression	expression	NOUN
kd17cr58w85	10	10	among	among	ADP
kd17cr58w85	10	11	putative	putative	ADJ
kd17cr58w85	10	12	interactions	interaction	NOUN
kd17cr58w85	10	13	.	.	PUNCT
kd17cr58w85	11	1	we	we	PRON
kd17cr58w85	11	2	also	also	ADV
kd17cr58w85	11	3	observe	observe	VERB
kd17cr58w85	11	4	high	high	ADJ
kd17cr58w85	11	5	levels	level	NOUN
kd17cr58w85	11	6	of	of	ADP
kd17cr58w85	11	7	co	co	NOUN
kd17cr58w85	11	8	-	-	NOUN
kd17cr58w85	11	9	expression	expression	NOUN
kd17cr58w85	11	10	among	among	ADP
kd17cr58w85	11	11	putative	putative	ADJ
kd17cr58w85	11	12	interactions	interaction	NOUN
kd17cr58w85	11	13	.	.	PUNCT
kd17cr58w85	12	1	we	we	PRON
kd17cr58w85	12	2	extend	extend	VERB
kd17cr58w85	12	3	our	our	PRON
kd17cr58w85	12	4	method	method	NOUN
kd17cr58w85	12	5	to	to	PART
kd17cr58w85	12	6	infer	infer	VERB
kd17cr58w85	12	7	protein	protein	NOUN
kd17cr58w85	12	8	-	-	PUNCT
kd17cr58w85	12	9	protein	protein	NOUN
kd17cr58w85	12	10	interactions	interaction	NOUN
kd17cr58w85	12	11	in	in	ADP
kd17cr58w85	12	12	multicellular	multicellular	ADJ
kd17cr58w85	12	13	organisms	organism	NOUN
kd17cr58w85	12	14	where	where	SCONJ
kd17cr58w85	12	15	protein	protein	NOUN
kd17cr58w85	12	16	-	-	PUNCT
kd17cr58w85	12	17	protein	protein	NOUN
kd17cr58w85	12	18	interaction	interaction	NOUN
kd17cr58w85	12	19	data	datum	NOUN
kd17cr58w85	12	20	currently	currently	ADV
kd17cr58w85	12	21	does	do	AUX
kd17cr58w85	12	22	not	not	PART
kd17cr58w85	12	23	exist	exist	VERB
kd17cr58w85	12	24	.	.	PUNCT
kd17cr58w85	13	1	starting	start	VERB
kd17cr58w85	13	2	from	from	ADP
kd17cr58w85	13	3	predictions	prediction	NOUN
kd17cr58w85	13	4	in	in	ADP
kd17cr58w85	13	5	yeast	yeast	NOUN
kd17cr58w85	13	6	,	,	PUNCT
kd17cr58w85	13	7	we	we	PRON
kd17cr58w85	13	8	find	find	VERB
kd17cr58w85	13	9	a	a	DET
kd17cr58w85	13	10	set	set	NOUN
kd17cr58w85	13	11	of	of	ADP
kd17cr58w85	13	12	orthologous	orthologous	ADJ
kd17cr58w85	13	13	interactions	interaction	NOUN
kd17cr58w85	13	14	in	in	ADP
kd17cr58w85	13	15	a.	a.	PROPN
kd17cr58w85	13	16	thaliana	thaliana	PROPN
kd17cr58w85	13	17	,	,	PUNCT
kd17cr58w85	13	18	c.	c.	PROPN
kd17cr58w85	13	19	elegans	elegans	PROPN
kd17cr58w85	13	20	,	,	PUNCT
kd17cr58w85	13	21	d.	d.	PROPN
kd17cr58w85	13	22	melanogaster	melanogaster	NOUN
kd17cr58w85	13	23	,	,	PUNCT
kd17cr58w85	13	24	m.	m.	NOUN
kd17cr58w85	13	25	musculus	musculus	PROPN
kd17cr58w85	13	26	,	,	PUNCT
kd17cr58w85	13	27	and	and	CCONJ
kd17cr58w85	13	28	h.	h.	PROPN
kd17cr58w85	13	29	sapiens	sapiens	PROPN
kd17cr58w85	13	30	.	.	PUNCT