id	sid	tid	token	lemma	pos
h415p843h2t	1	1	as	as	ADP
h415p843h2t	1	2	the	the	DET
h415p843h2t	1	3	cost	cost	NOUN
h415p843h2t	1	4	of	of	ADP
h415p843h2t	1	5	dna	dna	PROPN
h415p843h2t	1	6	sequencing	sequencing	NOUN
h415p843h2t	1	7	falls	fall	VERB
h415p843h2t	1	8	,	,	PUNCT
h415p843h2t	1	9	the	the	DET
h415p843h2t	1	10	relative	relative	ADJ
h415p843h2t	1	11	cost	cost	NOUN
h415p843h2t	1	12	of	of	ADP
h415p843h2t	1	13	finishing	finish	VERB
h415p843h2t	1	14	steps	step	NOUN
h415p843h2t	1	15	(	(	PUNCT
h415p843h2t	1	16	e.g.	e.g.	ADV
h415p843h2t	1	17	,	,	PUNCT
h415p843h2t	1	18	error	error	NOUN
h415p843h2t	1	19	correction	correction	NOUN
h415p843h2t	1	20	and	and	CCONJ
h415p843h2t	1	21	gap	gap	NOUN
h415p843h2t	1	22	-	-	PUNCT
h415p843h2t	1	23	closing	closing	NOUN
h415p843h2t	1	24	)	)	PUNCT
h415p843h2t	1	25	is	be	AUX
h415p843h2t	1	26	increasing	increase	VERB
h415p843h2t	1	27	.	.	PUNCT
h415p843h2t	2	1	as	as	ADP
h415p843h2t	2	2	a	a	DET
h415p843h2t	2	3	result	result	NOUN
h415p843h2t	2	4	,	,	PUNCT
h415p843h2t	2	5	many	many	ADJ
h415p843h2t	2	6	completed	complete	VERB
h415p843h2t	2	7	genome	genome	NOUN
h415p843h2t	2	8	projects	project	NOUN
h415p843h2t	2	9	are	be	AUX
h415p843h2t	2	10	only	only	ADV
h415p843h2t	2	11	completed	complete	VERB
h415p843h2t	2	12	to	to	PART
h415p843h2t	2	13	draft	draft	VERB
h415p843h2t	2	14	stages	stage	NOUN
h415p843h2t	2	15	and	and	CCONJ
h415p843h2t	2	16	may	may	AUX
h415p843h2t	2	17	not	not	PART
h415p843h2t	2	18	provide	provide	VERB
h415p843h2t	2	19	full	full	ADJ
h415p843h2t	2	20	information	information	NOUN
h415p843h2t	2	21	about	about	ADP
h415p843h2t	2	22	the	the	DET
h415p843h2t	2	23	location	location	NOUN
h415p843h2t	2	24	of	of	ADP
h415p843h2t	2	25	sequences	sequence	NOUN
h415p843h2t	2	26	on	on	ADP
h415p843h2t	2	27	the	the	DET
h415p843h2t	2	28	chromosome	chromosome	NOUN
h415p843h2t	2	29	.	.	PUNCT
h415p843h2t	3	1	further	far	ADV
h415p843h2t	3	2	,	,	PUNCT
h415p843h2t	3	3	they	they	PRON
h415p843h2t	3	4	may	may	AUX
h415p843h2t	3	5	contain	contain	VERB
h415p843h2t	3	6	gaps	gap	NOUN
h415p843h2t	3	7	and	and	CCONJ
h415p843h2t	3	8	assembly	assembly	NOUN
h415p843h2t	3	9	errors	error	NOUN
h415p843h2t	3	10	.	.	PUNCT
h415p843h2t	4	1	whether	whether	SCONJ
h415p843h2t	4	2	draft	draft	VERB
h415p843h2t	4	3	or	or	CCONJ
h415p843h2t	4	4	finished	finish	VERB
h415p843h2t	4	5	,	,	PUNCT
h415p843h2t	4	6	the	the	DET
h415p843h2t	4	7	output	output	NOUN
h415p843h2t	4	8	of	of	ADP
h415p843h2t	4	9	a	a	DET
h415p843h2t	4	10	genome	genome	NOUN
h415p843h2t	4	11	sequence	sequence	NOUN
h415p843h2t	4	12	project	project	NOUN
h415p843h2t	4	13	serves	serve	VERB
h415p843h2t	4	14	as	as	ADP
h415p843h2t	4	15	the	the	DET
h415p843h2t	4	16	input	input	NOUN
h415p843h2t	4	17	to	to	ADP
h415p843h2t	4	18	a	a	DET
h415p843h2t	4	19	host	host	NOUN
h415p843h2t	4	20	of	of	ADP
h415p843h2t	4	21	analysis	analysis	NOUN
h415p843h2t	4	22	tools	tool	NOUN
h415p843h2t	4	23	such	such	ADJ
h415p843h2t	4	24	as	as	ADP
h415p843h2t	4	25	gene	gene	NOUN
h415p843h2t	4	26	finding	finding	NOUN
h415p843h2t	4	27	or	or	CCONJ
h415p843h2t	4	28	variation	variation	NOUN
h415p843h2t	4	29	analysis	analysis	NOUN
h415p843h2t	4	30	.	.	PUNCT
h415p843h2t	5	1	many	many	ADJ
h415p843h2t	5	2	of	of	ADP
h415p843h2t	5	3	these	these	DET
h415p843h2t	5	4	tools	tool	NOUN
h415p843h2t	5	5	have	have	AUX
h415p843h2t	5	6	been	be	AUX
h415p843h2t	5	7	designed	design	VERB
h415p843h2t	5	8	for	for	ADP
h415p843h2t	5	9	and	and	CCONJ
h415p843h2t	5	10	tested	test	VERB
h415p843h2t	5	11	on	on	ADP
h415p843h2t	5	12	high	high	ADJ
h415p843h2t	5	13	-	-	PUNCT
h415p843h2t	5	14	quality	quality	NOUN
h415p843h2t	5	15	,	,	PUNCT
h415p843h2t	5	16	finished	finished	ADJ
h415p843h2t	5	17	genomes	genome	NOUN
h415p843h2t	5	18	such	such	ADJ
h415p843h2t	5	19	as	as	ADP
h415p843h2t	5	20	human	human	NOUN
h415p843h2t	5	21	or	or	CCONJ
h415p843h2t	5	22	the	the	DET
h415p843h2t	5	23	fruit	fruit	NOUN
h415p843h2t	5	24	fly	fly	NOUN
h415p843h2t	5	25	drosophila	drosophila	NOUN
h415p843h2t	5	26	melanogaster	melanogaster	NOUN
h415p843h2t	5	27	.	.	PUNCT
h415p843h2t	6	1	in	in	ADP
h415p843h2t	6	2	this	this	DET
h415p843h2t	6	3	thesis	thesis	NOUN
h415p843h2t	6	4	we	we	PRON
h415p843h2t	6	5	discuss	discuss	VERB
h415p843h2t	6	6	specific	specific	ADJ
h415p843h2t	6	7	challenges	challenge	NOUN
h415p843h2t	6	8	in	in	ADP
h415p843h2t	6	9	working	work	VERB
h415p843h2t	6	10	with	with	ADP
h415p843h2t	6	11	draft	draft	NOUN
h415p843h2t	6	12	genomes	genome	NOUN
h415p843h2t	6	13	and	and	CCONJ
h415p843h2t	6	14	show	show	VERB
h415p843h2t	6	15	how	how	SCONJ
h415p843h2t	6	16	methods	method	NOUN
h415p843h2t	6	17	can	can	AUX
h415p843h2t	6	18	be	be	AUX
h415p843h2t	6	19	adapted	adapt	VERB
h415p843h2t	6	20	to	to	PART
h415p843h2t	6	21	be	be	AUX
h415p843h2t	6	22	more	more	ADV
h415p843h2t	6	23	effective	effective	ADJ
h415p843h2t	6	24	in	in	ADP
h415p843h2t	6	25	draft	draft	NOUN
h415p843h2t	6	26	genomes	genome	NOUN
h415p843h2t	6	27	.	.	PUNCT
h415p843h2t	7	1	first	first	ADV
h415p843h2t	7	2	,	,	PUNCT
h415p843h2t	7	3	we	we	PRON
h415p843h2t	7	4	examine	examine	VERB
h415p843h2t	7	5	computational	computational	ADJ
h415p843h2t	7	6	methods	method	NOUN
h415p843h2t	7	7	for	for	ADP
h415p843h2t	7	8	finding	find	VERB
h415p843h2t	7	9	errors	error	NOUN
h415p843h2t	7	10	in	in	ADP
h415p843h2t	7	11	draft	draft	NOUN
h415p843h2t	7	12	assemblies	assembly	NOUN
h415p843h2t	7	13	.	.	PUNCT
h415p843h2t	8	1	next	next	ADV
h415p843h2t	8	2	,	,	PUNCT
h415p843h2t	8	3	we	we	PRON
h415p843h2t	8	4	modify	modify	VERB
h415p843h2t	8	5	a	a	DET
h415p843h2t	8	6	technique	technique	NOUN
h415p843h2t	8	7	for	for	ADP
h415p843h2t	8	8	finding	find	VERB
h415p843h2t	8	9	dna	dna	NOUN
h415p843h2t	8	10	inversions	inversion	NOUN
h415p843h2t	8	11	between	between	ADP
h415p843h2t	8	12	two	two	NUM
h415p843h2t	8	13	genomes	genome	NOUN
h415p843h2t	8	14	to	to	PART
h415p843h2t	8	15	account	account	VERB
h415p843h2t	8	16	for	for	ADP
h415p843h2t	8	17	gaps	gap	NOUN
h415p843h2t	8	18	in	in	ADP
h415p843h2t	8	19	the	the	DET
h415p843h2t	8	20	genomes	genome	NOUN
h415p843h2t	8	21	.	.	PUNCT
h415p843h2t	9	1	finally	finally	ADV
h415p843h2t	9	2	,	,	PUNCT
h415p843h2t	9	3	we	we	PRON
h415p843h2t	9	4	develop	develop	VERB
h415p843h2t	9	5	a	a	DET
h415p843h2t	9	6	pipeline	pipeline	NOUN
h415p843h2t	9	7	to	to	PART
h415p843h2t	9	8	construct	construct	VERB
h415p843h2t	9	9	chromosomes	chromosome	NOUN
h415p843h2t	9	10	out	out	ADP
h415p843h2t	9	11	of	of	ADP
h415p843h2t	9	12	draft	draft	NOUN
h415p843h2t	9	13	scaffolds	scaffold	NOUN
h415p843h2t	9	14	using	use	VERB
h415p843h2t	9	15	a	a	DET
h415p843h2t	9	16	closely	closely	ADV
h415p843h2t	9	17	related	relate	VERB
h415p843h2t	9	18	reference	reference	NOUN
h415p843h2t	9	19	genome	genome	NOUN
h415p843h2t	9	20	.	.	PUNCT
h415p843h2t	10	1	we	we	PRON
h415p843h2t	10	2	use	use	VERB
h415p843h2t	10	3	examples	example	NOUN
h415p843h2t	10	4	from	from	ADP
h415p843h2t	10	5	three	three	NUM
h415p843h2t	10	6	different	different	ADJ
h415p843h2t	10	7	species	specie	NOUN
h415p843h2t	10	8	of	of	ADP
h415p843h2t	10	9	importance	importance	NOUN
h415p843h2t	10	10	to	to	ADP
h415p843h2t	10	11	global	global	ADJ
h415p843h2t	10	12	health	health	NOUN
h415p843h2t	10	13	:	:	PUNCT
h415p843h2t	10	14	the	the	DET
h415p843h2t	10	15	body	body	NOUN
h415p843h2t	10	16	louse	louse	NOUN
h415p843h2t	10	17	(	(	PUNCT
h415p843h2t	10	18	pediculus	pediculus	NOUN
h415p843h2t	10	19	humanus	humanu	NOUN
h415p843h2t	10	20	)	)	PUNCT
h415p843h2t	10	21	,	,	PUNCT
h415p843h2t	10	22	a	a	DET
h415p843h2t	10	23	malaria	malaria	NOUN
h415p843h2t	10	24	mosquito	mosquito	PROPN
h415p843h2t	10	25	(	(	PUNCT
h415p843h2t	10	26	anopheles	anophele	NOUN
h415p843h2t	10	27	gambiae	gambiae	NOUN
h415p843h2t	10	28	)	)	PUNCT
h415p843h2t	10	29	,	,	PUNCT
h415p843h2t	10	30	and	and	CCONJ
h415p843h2t	10	31	the	the	DET
h415p843h2t	10	32	human	human	ADJ
h415p843h2t	10	33	malaria	malaria	NOUN
h415p843h2t	10	34	parasite	parasite	NOUN
h415p843h2t	10	35	(	(	PUNCT
h415p843h2t	10	36	plasmodium	plasmodium	NOUN
h415p843h2t	10	37	falciparum	falciparum	NOUN
h415p843h2t	10	38	)	)	PUNCT
h415p843h2t	10	39	.	.	PUNCT