id	sid	tid	token	lemma	pos
9s161546c8t	1	1	in	in	ADP
9s161546c8t	1	2	this	this	DET
9s161546c8t	1	3	thesis	thesis	NOUN
9s161546c8t	1	4	we	we	PRON
9s161546c8t	1	5	present	present	VERB
9s161546c8t	1	6	the	the	DET
9s161546c8t	1	7	abnnsim	abnnsim	NOUN
9s161546c8t	1	8	toolkit	toolkit	NOUN
9s161546c8t	1	9	for	for	ADP
9s161546c8t	1	10	the	the	DET
9s161546c8t	1	11	simulation	simulation	NOUN
9s161546c8t	1	12	of	of	ADP
9s161546c8t	1	13	biologically	biologically	ADV
9s161546c8t	1	14	inspired	inspire	VERB
9s161546c8t	1	15	neural	neural	ADJ
9s161546c8t	1	16	networks	network	NOUN
9s161546c8t	1	17	.	.	PUNCT
9s161546c8t	2	1	this	this	DET
9s161546c8t	2	2	work	work	NOUN
9s161546c8t	2	3	applies	apply	VERB
9s161546c8t	2	4	the	the	DET
9s161546c8t	2	5	agent	agent	NOUN
9s161546c8t	2	6	based	base	VERB
9s161546c8t	2	7	modeling	modeling	NOUN
9s161546c8t	2	8	paradigm	paradigm	NOUN
9s161546c8t	2	9	to	to	ADP
9s161546c8t	2	10	the	the	DET
9s161546c8t	2	11	simulation	simulation	NOUN
9s161546c8t	2	12	of	of	ADP
9s161546c8t	2	13	biological	biological	ADJ
9s161546c8t	2	14	neural	neural	ADJ
9s161546c8t	2	15	networks	network	NOUN
9s161546c8t	2	16	,	,	PUNCT
9s161546c8t	2	17	allowing	allow	VERB
9s161546c8t	2	18	rapid	rapid	ADJ
9s161546c8t	2	19	development	development	NOUN
9s161546c8t	2	20	of	of	ADP
9s161546c8t	2	21	models	model	NOUN
9s161546c8t	2	22	,	,	PUNCT
9s161546c8t	2	23	easy	easy	ADJ
9s161546c8t	2	24	addition	addition	NOUN
9s161546c8t	2	25	of	of	ADP
9s161546c8t	2	26	features	feature	NOUN
9s161546c8t	2	27	and	and	CCONJ
9s161546c8t	2	28	a	a	DET
9s161546c8t	2	29	richness	richness	NOUN
9s161546c8t	2	30	of	of	ADP
9s161546c8t	2	31	expression	expression	NOUN
9s161546c8t	2	32	that	that	PRON
9s161546c8t	2	33	is	be	AUX
9s161546c8t	2	34	not	not	PART
9s161546c8t	2	35	available	available	ADJ
9s161546c8t	2	36	with	with	ADP
9s161546c8t	2	37	other	other	ADJ
9s161546c8t	2	38	tools	tool	NOUN
9s161546c8t	2	39	.	.	PUNCT
9s161546c8t	3	1	the	the	DET
9s161546c8t	3	2	focus	focus	NOUN
9s161546c8t	3	3	of	of	ADP
9s161546c8t	3	4	the	the	DET
9s161546c8t	3	5	abnnsim	abnnsim	NOUN
9s161546c8t	3	6	toolkit	toolkit	NOUN
9s161546c8t	3	7	is	be	AUX
9s161546c8t	3	8	modeling	model	VERB
9s161546c8t	3	9	neural	neural	ADJ
9s161546c8t	3	10	networks	network	NOUN
9s161546c8t	3	11	at	at	ADP
9s161546c8t	3	12	the	the	DET
9s161546c8t	3	13	network	network	NOUN
9s161546c8t	3	14	level	level	NOUN
9s161546c8t	3	15	.	.	PUNCT
9s161546c8t	4	1	this	this	DET
9s161546c8t	4	2	view	view	NOUN
9s161546c8t	4	3	leads	lead	VERB
9s161546c8t	4	4	to	to	ADP
9s161546c8t	4	5	some	some	DET
9s161546c8t	4	6	loss	loss	NOUN
9s161546c8t	4	7	of	of	ADP
9s161546c8t	4	8	fidelity	fidelity	NOUN
9s161546c8t	4	9	over	over	ADP
9s161546c8t	4	10	other	other	ADJ
9s161546c8t	4	11	computational	computational	ADJ
9s161546c8t	4	12	neuroscience	neuroscience	NOUN
9s161546c8t	4	13	tools	tool	NOUN
9s161546c8t	4	14	,	,	PUNCT
9s161546c8t	4	15	but	but	CCONJ
9s161546c8t	4	16	allows	allow	VERB
9s161546c8t	4	17	larger	large	ADJ
9s161546c8t	4	18	,	,	PUNCT
9s161546c8t	4	19	system	system	NOUN
9s161546c8t	4	20	-	-	PUNCT
9s161546c8t	4	21	level	level	NOUN
9s161546c8t	4	22	phenomena	phenomena	NOUN
9s161546c8t	4	23	to	to	PART
9s161546c8t	4	24	be	be	AUX
9s161546c8t	4	25	explored	explore	VERB
9s161546c8t	4	26	.	.	PUNCT
9s161546c8t	5	1	this	this	PRON
9s161546c8t	5	2	is	be	AUX
9s161546c8t	5	3	motivated	motivate	VERB
9s161546c8t	5	4	by	by	ADP
9s161546c8t	5	5	discoveries	discovery	NOUN
9s161546c8t	5	6	in	in	ADP
9s161546c8t	5	7	the	the	DET
9s161546c8t	5	8	area	area	NOUN
9s161546c8t	5	9	of	of	ADP
9s161546c8t	5	10	complex	complex	ADJ
9s161546c8t	5	11	networks	network	NOUN
9s161546c8t	5	12	,	,	PUNCT
9s161546c8t	5	13	in	in	ADP
9s161546c8t	5	14	their	their	PRON
9s161546c8t	5	15	analysis	analysis	NOUN
9s161546c8t	5	16	and	and	CCONJ
9s161546c8t	5	17	prevalence	prevalence	NOUN
9s161546c8t	5	18	in	in	ADP
9s161546c8t	5	19	biological	biological	ADJ
9s161546c8t	5	20	systems	system	NOUN
9s161546c8t	5	21	.	.	PUNCT
9s161546c8t	6	1	these	these	DET
9s161546c8t	6	2	networks	network	NOUN
9s161546c8t	6	3	have	have	VERB
9s161546c8t	6	4	characteristics	characteristic	NOUN
9s161546c8t	6	5	that	that	PRON
9s161546c8t	6	6	are	be	AUX
9s161546c8t	6	7	desirable	desirable	ADJ
9s161546c8t	6	8	for	for	ADP
9s161546c8t	6	9	biological	biological	ADJ
9s161546c8t	6	10	systems	system	NOUN
9s161546c8t	6	11	:	:	PUNCT
9s161546c8t	6	12	they	they	PRON
9s161546c8t	6	13	are	be	AUX
9s161546c8t	6	14	resilient	resilient	ADJ
9s161546c8t	6	15	in	in	ADP
9s161546c8t	6	16	the	the	DET
9s161546c8t	6	17	face	face	NOUN
9s161546c8t	6	18	of	of	ADP
9s161546c8t	6	19	failure	failure	NOUN
9s161546c8t	6	20	,	,	PUNCT
9s161546c8t	6	21	efficient	efficient	ADJ
9s161546c8t	6	22	(	(	PUNCT
9s161546c8t	6	23	both	both	CCONJ
9s161546c8t	6	24	in	in	ADP
9s161546c8t	6	25	terms	term	NOUN
9s161546c8t	6	26	of	of	ADP
9s161546c8t	6	27	communication	communication	NOUN
9s161546c8t	6	28	cost	cost	NOUN
9s161546c8t	6	29	and	and	CCONJ
9s161546c8t	6	30	speed	speed	NOUN
9s161546c8t	6	31	of	of	ADP
9s161546c8t	6	32	propagation	propagation	NOUN
9s161546c8t	6	33	)	)	PUNCT
9s161546c8t	6	34	and	and	CCONJ
9s161546c8t	6	35	can	can	AUX
9s161546c8t	6	36	be	be	AUX
9s161546c8t	6	37	constructed	construct	VERB
9s161546c8t	6	38	using	use	VERB
9s161546c8t	6	39	simple	simple	ADJ
9s161546c8t	6	40	local	local	ADJ
9s161546c8t	6	41	rules	rule	NOUN
9s161546c8t	6	42	.	.	PUNCT
9s161546c8t	7	1	this	this	DET
9s161546c8t	7	2	thesis	thesis	NOUN
9s161546c8t	7	3	describes	describe	VERB
9s161546c8t	7	4	several	several	ADJ
9s161546c8t	7	5	methods	method	NOUN
9s161546c8t	7	6	of	of	ADP
9s161546c8t	7	7	developing	develop	VERB
9s161546c8t	7	8	complex	complex	ADJ
9s161546c8t	7	9	network	network	NOUN
9s161546c8t	7	10	topologies	topology	NOUN
9s161546c8t	7	11	in	in	ADP
9s161546c8t	7	12	neural	neural	ADJ
9s161546c8t	7	13	networks	network	NOUN
9s161546c8t	7	14	using	use	VERB
9s161546c8t	7	15	pruning	prune	VERB
9s161546c8t	7	16	.	.	PUNCT
9s161546c8t	8	1	throughout	throughout	ADP
9s161546c8t	8	2	the	the	DET
9s161546c8t	8	3	project	project	NOUN
9s161546c8t	8	4	the	the	DET
9s161546c8t	8	5	agent	agent	NOUN
9s161546c8t	8	6	-	-	PUNCT
9s161546c8t	8	7	based	base	VERB
9s161546c8t	8	8	modeling	modeling	NOUN
9s161546c8t	8	9	paradigm	paradigm	NOUN
9s161546c8t	8	10	has	have	AUX
9s161546c8t	8	11	been	be	AUX
9s161546c8t	8	12	valuable	valuable	ADJ
9s161546c8t	8	13	as	as	ADP
9s161546c8t	8	14	a	a	DET
9s161546c8t	8	15	vital	vital	ADJ
9s161546c8t	8	16	tool	tool	NOUN
9s161546c8t	8	17	for	for	ADP
9s161546c8t	8	18	speeding	speed	VERB
9s161546c8t	8	19	the	the	DET
9s161546c8t	8	20	development	development	NOUN
9s161546c8t	8	21	and	and	CCONJ
9s161546c8t	8	22	deployment	deployment	NOUN
9s161546c8t	8	23	of	of	ADP
9s161546c8t	8	24	simulations	simulation	NOUN
9s161546c8t	8	25	of	of	ADP
9s161546c8t	8	26	this	this	DET
9s161546c8t	8	27	type	type	NOUN
9s161546c8t	8	28	.	.	PUNCT