id	sid	tid	token	lemma	pos
2b88qc00j27	1	1	network	network	NOUN
2b88qc00j27	1	2	science	science	NOUN
2b88qc00j27	1	3	spans	span	VERB
2b88qc00j27	1	4	many	many	ADJ
2b88qc00j27	1	5	domains	domain	NOUN
2b88qc00j27	1	6	,	,	PUNCT
2b88qc00j27	1	7	including	include	VERB
2b88qc00j27	1	8	computational	computational	ADJ
2b88qc00j27	1	9	biology	biology	NOUN
2b88qc00j27	1	10	.	.	PUNCT
2b88qc00j27	2	1	biomolecules	biomolecule	NOUN
2b88qc00j27	2	2	in	in	ADP
2b88qc00j27	2	3	the	the	DET
2b88qc00j27	2	4	cell	cell	NOUN
2b88qc00j27	2	5	do	do	AUX
2b88qc00j27	2	6	not	not	PART
2b88qc00j27	2	7	function	function	VERB
2b88qc00j27	2	8	alone	alone	ADV
2b88qc00j27	2	9	but	but	CCONJ
2b88qc00j27	2	10	instead	instead	ADV
2b88qc00j27	2	11	interact	interact	VERB
2b88qc00j27	2	12	with	with	ADP
2b88qc00j27	2	13	each	each	DET
2b88qc00j27	2	14	other	other	ADJ
2b88qc00j27	2	15	to	to	PART
2b88qc00j27	2	16	carry	carry	VERB
2b88qc00j27	2	17	out	out	ADP
2b88qc00j27	2	18	cellular	cellular	ADJ
2b88qc00j27	2	19	processes	process	NOUN
2b88qc00j27	2	20	.	.	PUNCT
2b88qc00j27	3	1	this	this	PRON
2b88qc00j27	3	2	is	be	AUX
2b88qc00j27	3	3	what	what	PRON
2b88qc00j27	3	4	biological	biological	ADJ
2b88qc00j27	3	5	networks	network	NOUN
2b88qc00j27	3	6	model	model	NOUN
2b88qc00j27	3	7	.	.	PUNCT
2b88qc00j27	4	1	efficient	efficient	ADJ
2b88qc00j27	4	2	computational	computational	ADJ
2b88qc00j27	4	3	analyses	analysis	NOUN
2b88qc00j27	4	4	of	of	ADP
2b88qc00j27	4	5	biological	biological	ADJ
2b88qc00j27	4	6	networks	network	NOUN
2b88qc00j27	4	7	have	have	VERB
2b88qc00j27	4	8	a	a	DET
2b88qc00j27	4	9	potential	potential	NOUN
2b88qc00j27	4	10	to	to	PART
2b88qc00j27	4	11	deepen	deepen	VERB
2b88qc00j27	4	12	our	our	PRON
2b88qc00j27	4	13	understanding	understanding	NOUN
2b88qc00j27	4	14	of	of	ADP
2b88qc00j27	4	15	complex	complex	ADJ
2b88qc00j27	4	16	biological	biological	ADJ
2b88qc00j27	4	17	processes	process	NOUN
2b88qc00j27	4	18	,	,	PUNCT
2b88qc00j27	4	19	which	which	PRON
2b88qc00j27	4	20	has	have	VERB
2b88qc00j27	4	21	important	important	ADJ
2b88qc00j27	4	22	biomedical	biomedical	ADJ
2b88qc00j27	4	23	applications	application	NOUN
2b88qc00j27	4	24	,	,	PUNCT
2b88qc00j27	4	25	such	such	ADJ
2b88qc00j27	4	26	as	as	ADP
2b88qc00j27	4	27	identification	identification	NOUN
2b88qc00j27	4	28	of	of	ADP
2b88qc00j27	4	29	disease	disease	NOUN
2b88qc00j27	4	30	genes	gene	NOUN
2b88qc00j27	4	31	.	.	PUNCT
2b88qc00j27	5	1	however	however	ADV
2b88qc00j27	5	2	,	,	PUNCT
2b88qc00j27	5	3	several	several	ADJ
2b88qc00j27	5	4	challenges	challenge	NOUN
2b88qc00j27	5	5	exist	exist	VERB
2b88qc00j27	5	6	in	in	ADP
2b88qc00j27	5	7	biological	biological	ADJ
2b88qc00j27	5	8	network	network	NOUN
2b88qc00j27	5	9	research	research	NOUN
2b88qc00j27	5	10	:	:	PUNCT
2b88qc00j27	5	11	1	1	X
2b88qc00j27	5	12	)	)	PUNCT
2b88qc00j27	5	13	biological	biological	ADJ
2b88qc00j27	5	14	network	network	NOUN
2b88qc00j27	5	15	data	datum	NOUN
2b88qc00j27	5	16	are	be	AUX
2b88qc00j27	5	17	heterogeneous	heterogeneous	ADJ
2b88qc00j27	5	18	due	due	ADP
2b88qc00j27	5	19	to	to	ADP
2b88qc00j27	5	20	availability	availability	NOUN
2b88qc00j27	5	21	of	of	ADP
2b88qc00j27	5	22	various	various	ADJ
2b88qc00j27	5	23	data	datum	NOUN
2b88qc00j27	5	24	types	type	NOUN
2b88qc00j27	5	25	.	.	PUNCT
2b88qc00j27	6	1	2	2	X
2b88qc00j27	6	2	)	)	PUNCT
2b88qc00j27	6	3	the	the	DET
2b88qc00j27	6	4	data	datum	NOUN
2b88qc00j27	6	5	represent	represent	VERB
2b88qc00j27	6	6	static	static	ADJ
2b88qc00j27	6	7	snapshots	snapshot	NOUN
2b88qc00j27	6	8	of	of	ADP
2b88qc00j27	6	9	dynamic	dynamic	ADJ
2b88qc00j27	6	10	cellular	cellular	ADJ
2b88qc00j27	6	11	functioning	functioning	NOUN
2b88qc00j27	6	12	.	.	PUNCT
2b88qc00j27	7	1	3	3	X
2b88qc00j27	7	2	)	)	PUNCT
2b88qc00j27	7	3	the	the	DET
2b88qc00j27	7	4	data	datum	NOUN
2b88qc00j27	7	5	are	be	AUX
2b88qc00j27	7	6	noisy	noisy	ADJ
2b88qc00j27	7	7	.	.	PUNCT
2b88qc00j27	8	1	4	4	X
2b88qc00j27	8	2	)	)	PUNCT
2b88qc00j27	8	3	many	many	ADJ
2b88qc00j27	8	4	network	network	NOUN
2b88qc00j27	8	5	theoretic	theoretic	ADJ
2b88qc00j27	8	6	problems	problem	NOUN
2b88qc00j27	8	7	,	,	PUNCT
2b88qc00j27	8	8	such	such	ADJ
2b88qc00j27	8	9	as	as	ADP
2b88qc00j27	8	10	network	network	NOUN
2b88qc00j27	8	11	comparison	comparison	NOUN
2b88qc00j27	8	12	and	and	CCONJ
2b88qc00j27	8	13	alignment	alignment	NOUN
2b88qc00j27	8	14	,	,	PUNCT
2b88qc00j27	8	15	are	be	AUX
2b88qc00j27	8	16	computationally	computationally	ADV
2b88qc00j27	8	17	intractable	intractable	ADJ
2b88qc00j27	8	18	.	.	PUNCT
2b88qc00j27	9	1	yet	yet	ADV
2b88qc00j27	9	2	,	,	PUNCT
2b88qc00j27	9	3	developing	develop	VERB
2b88qc00j27	9	4	efficient	efficient	ADJ
2b88qc00j27	9	5	computational	computational	ADJ
2b88qc00j27	9	6	strategies	strategy	NOUN
2b88qc00j27	9	7	to	to	PART
2b88qc00j27	9	8	address	address	VERB
2b88qc00j27	9	9	these	these	DET
2b88qc00j27	9	10	challenges	challenge	NOUN
2b88qc00j27	9	11	is	be	AUX
2b88qc00j27	9	12	important	important	ADJ
2b88qc00j27	9	13	,	,	PUNCT
2b88qc00j27	9	14	as	as	SCONJ
2b88qc00j27	9	15	such	such	ADJ
2b88qc00j27	9	16	strategies	strategy	NOUN
2b88qc00j27	9	17	can	can	AUX
2b88qc00j27	9	18	assist	assist	VERB
2b88qc00j27	9	19	with	with	ADP
2b88qc00j27	9	20	e.g.	e.g.	ADJ
2b88qc00j27	9	21	,	,	PUNCT
2b88qc00j27	9	22	across	across	ADP
2b88qc00j27	9	23	-	-	PUNCT
2b88qc00j27	9	24	species	species	NOUN
2b88qc00j27	9	25	transfer	transfer	NOUN
2b88qc00j27	9	26	of	of	ADP
2b88qc00j27	9	27	biological	biological	ADJ
2b88qc00j27	9	28	knowledge	knowledge	NOUN
2b88qc00j27	9	29	or	or	CCONJ
2b88qc00j27	9	30	protein	protein	NOUN
2b88qc00j27	9	31	classification.with	classification.with	ADP
2b88qc00j27	9	32	these	these	DET
2b88qc00j27	9	33	motivations	motivation	NOUN
2b88qc00j27	9	34	,	,	PUNCT
2b88qc00j27	9	35	this	this	DET
2b88qc00j27	9	36	ph.d	ph.d	PROPN
2b88qc00j27	9	37	.	.	PUNCT
2b88qc00j27	9	38	dissertation	dissertation	NOUN
2b88qc00j27	9	39	focuses	focus	VERB
2b88qc00j27	9	40	on	on	ADP
2b88qc00j27	9	41	the	the	DET
2b88qc00j27	9	42	development	development	NOUN
2b88qc00j27	9	43	of	of	ADP
2b88qc00j27	9	44	the	the	DET
2b88qc00j27	9	45	following	following	ADJ
2b88qc00j27	9	46	novel	novel	ADJ
2b88qc00j27	9	47	computational	computational	ADJ
2b88qc00j27	9	48	strategies	strategy	NOUN
2b88qc00j27	9	49	for	for	ADP
2b88qc00j27	9	50	integrative	integrative	ADJ
2b88qc00j27	9	51	,	,	PUNCT
2b88qc00j27	9	52	dynamic	dynamic	ADJ
2b88qc00j27	9	53	,	,	PUNCT
2b88qc00j27	9	54	and	and	CCONJ
2b88qc00j27	9	55	comparative	comparative	ADJ
2b88qc00j27	9	56	biological	biological	ADJ
2b88qc00j27	9	57	network	network	NOUN
2b88qc00j27	9	58	analysis	analysis	NOUN
2b88qc00j27	9	59	.	.	PUNCT
2b88qc00j27	10	1	1	1	X
2b88qc00j27	10	2	)	)	PUNCT
2b88qc00j27	10	3	since	since	SCONJ
2b88qc00j27	10	4	different	different	ADJ
2b88qc00j27	10	5	biological	biological	ADJ
2b88qc00j27	10	6	data	datum	NOUN
2b88qc00j27	10	7	types	type	NOUN
2b88qc00j27	10	8	can	can	AUX
2b88qc00j27	10	9	complement	complement	VERB
2b88qc00j27	10	10	each	each	DET
2b88qc00j27	10	11	other	other	ADJ
2b88qc00j27	10	12	,	,	PUNCT
2b88qc00j27	10	13	we	we	PRON
2b88qc00j27	10	14	develop	develop	VERB
2b88qc00j27	10	15	a	a	DET
2b88qc00j27	10	16	computational	computational	ADJ
2b88qc00j27	10	17	framework	framework	NOUN
2b88qc00j27	10	18	for	for	ADP
2b88qc00j27	10	19	integrating	integrate	VERB
2b88qc00j27	10	20	different	different	ADJ
2b88qc00j27	10	21	data	datum	NOUN
2b88qc00j27	10	22	types	type	NOUN
2b88qc00j27	10	23	to	to	PART
2b88qc00j27	10	24	allow	allow	VERB
2b88qc00j27	10	25	for	for	ADP
2b88qc00j27	10	26	comprehensive	comprehensive	ADJ
2b88qc00j27	10	27	data	datum	NOUN
2b88qc00j27	10	28	analyses	analysis	NOUN
2b88qc00j27	10	29	.	.	PUNCT
2b88qc00j27	11	1	2	2	X
2b88qc00j27	11	2	)	)	PUNCT
2b88qc00j27	11	3	while	while	SCONJ
2b88qc00j27	11	4	current	current	ADJ
2b88qc00j27	11	5	biological	biological	ADJ
2b88qc00j27	11	6	network	network	NOUN
2b88qc00j27	11	7	research	research	NOUN
2b88qc00j27	11	8	has	have	AUX
2b88qc00j27	11	9	been	be	AUX
2b88qc00j27	11	10	static	static	ADJ
2b88qc00j27	11	11	,	,	PUNCT
2b88qc00j27	11	12	to	to	PART
2b88qc00j27	11	13	better	well	ADV
2b88qc00j27	11	14	understand	understand	VERB
2b88qc00j27	11	15	dynamic	dynamic	ADJ
2b88qc00j27	11	16	cellular	cellular	ADJ
2b88qc00j27	11	17	functioning	functioning	NOUN
2b88qc00j27	11	18	,	,	PUNCT
2b88qc00j27	11	19	we	we	PRON
2b88qc00j27	11	20	use	use	VERB
2b88qc00j27	11	21	the	the	DET
2b88qc00j27	11	22	integrative	integrative	ADJ
2b88qc00j27	11	23	framework	framework	NOUN
2b88qc00j27	11	24	to	to	PART
2b88qc00j27	11	25	infer	infer	VERB
2b88qc00j27	11	26	dynamic	dynamic	ADJ
2b88qc00j27	11	27	biological	biological	ADJ
2b88qc00j27	11	28	networks	network	NOUN
2b88qc00j27	11	29	.	.	PUNCT
2b88qc00j27	12	1	then	then	ADV
2b88qc00j27	12	2	,	,	PUNCT
2b88qc00j27	12	3	we	we	PRON
2b88qc00j27	12	4	analyze	analyze	VERB
2b88qc00j27	12	5	the	the	DET
2b88qc00j27	12	6	dynamic	dynamic	ADJ
2b88qc00j27	12	7	networks	network	NOUN
2b88qc00j27	12	8	to	to	PART
2b88qc00j27	12	9	(	(	PUNCT
2b88qc00j27	12	10	computationally	computationally	ADV
2b88qc00j27	12	11	)	)	PUNCT
2b88qc00j27	12	12	predict	predict	VERB
2b88qc00j27	12	13	new	new	ADJ
2b88qc00j27	12	14	biological	biological	ADJ
2b88qc00j27	12	15	knowledge	knowledge	NOUN
2b88qc00j27	12	16	.	.	PUNCT
2b88qc00j27	13	1	3	3	X
2b88qc00j27	13	2	)	)	PUNCT
2b88qc00j27	13	3	since	since	SCONJ
2b88qc00j27	13	4	current	current	ADJ
2b88qc00j27	13	5	biological	biological	ADJ
2b88qc00j27	13	6	network	network	NOUN
2b88qc00j27	13	7	data	datum	NOUN
2b88qc00j27	13	8	are	be	AUX
2b88qc00j27	13	9	noisy	noisy	ADJ
2b88qc00j27	13	10	,	,	PUNCT
2b88qc00j27	13	11	we	we	PRON
2b88qc00j27	13	12	computationally	computationally	ADV
2b88qc00j27	13	13	de	de	ADJ
2b88qc00j27	13	14	-	-	ADJ
2b88qc00j27	13	15	noise	noise	ADJ
2b88qc00j27	13	16	the	the	DET
2b88qc00j27	13	17	data	datum	NOUN
2b88qc00j27	13	18	to	to	PART
2b88qc00j27	13	19	improve	improve	VERB
2b88qc00j27	13	20	the	the	DET
2b88qc00j27	13	21	prediction	prediction	NOUN
2b88qc00j27	13	22	quality	quality	NOUN
2b88qc00j27	13	23	.	.	PUNCT
2b88qc00j27	14	1	4	4	X
2b88qc00j27	14	2	)	)	PUNCT
2b88qc00j27	14	3	since	since	SCONJ
2b88qc00j27	14	4	network	network	NOUN
2b88qc00j27	14	5	alignment	alignment	NOUN
2b88qc00j27	14	6	(	(	PUNCT
2b88qc00j27	14	7	na	na	NOUN
2b88qc00j27	14	8	)	)	PUNCT
2b88qc00j27	14	9	can	can	AUX
2b88qc00j27	14	10	aid	aid	VERB
2b88qc00j27	14	11	across	across	ADP
2b88qc00j27	14	12	-	-	PUNCT
2b88qc00j27	14	13	species	species	NOUN
2b88qc00j27	14	14	knowledge	knowledge	NOUN
2b88qc00j27	14	15	transfer	transfer	NOUN
2b88qc00j27	14	16	,	,	PUNCT
2b88qc00j27	14	17	we	we	PRON
2b88qc00j27	14	18	develop	develop	VERB
2b88qc00j27	14	19	a	a	DET
2b88qc00j27	14	20	computational	computational	ADJ
2b88qc00j27	14	21	framework	framework	NOUN
2b88qc00j27	14	22	for	for	ADP
2b88qc00j27	14	23	fair	fair	ADJ
2b88qc00j27	14	24	evaluation	evaluation	NOUN
2b88qc00j27	14	25	of	of	ADP
2b88qc00j27	14	26	na	na	ADP
2b88qc00j27	14	27	methods	method	NOUN
2b88qc00j27	14	28	.	.	PUNCT
2b88qc00j27	15	1	since	since	SCONJ
2b88qc00j27	15	2	a	a	DET
2b88qc00j27	15	3	heterogeneous	heterogeneous	ADJ
2b88qc00j27	15	4	network	network	NOUN
2b88qc00j27	15	5	capturing	capture	VERB
2b88qc00j27	15	6	different	different	ADJ
2b88qc00j27	15	7	data	datum	NOUN
2b88qc00j27	15	8	types	type	NOUN
2b88qc00j27	15	9	can	can	AUX
2b88qc00j27	15	10	allow	allow	VERB
2b88qc00j27	15	11	for	for	ADP
2b88qc00j27	15	12	more	more	ADV
2b88qc00j27	15	13	comprehensive	comprehensive	ADJ
2b88qc00j27	15	14	data	datum	NOUN
2b88qc00j27	15	15	analyses	analysis	NOUN
2b88qc00j27	15	16	compared	compare	VERB
2b88qc00j27	15	17	to	to	ADP
2b88qc00j27	15	18	a	a	DET
2b88qc00j27	15	19	homogeneous	homogeneous	ADJ
2b88qc00j27	15	20	network	network	NOUN
2b88qc00j27	15	21	,	,	PUNCT
2b88qc00j27	15	22	and	and	CCONJ
2b88qc00j27	15	23	also	also	ADV
2b88qc00j27	15	24	since	since	SCONJ
2b88qc00j27	15	25	traditional	traditional	ADJ
2b88qc00j27	15	26	na	na	PART
2b88qc00j27	15	27	has	have	AUX
2b88qc00j27	15	28	been	be	AUX
2b88qc00j27	15	29	homogeneous	homogeneous	ADJ
2b88qc00j27	15	30	,	,	PUNCT
2b88qc00j27	15	31	we	we	PRON
2b88qc00j27	15	32	introduce	introduce	VERB
2b88qc00j27	15	33	a	a	DET
2b88qc00j27	15	34	novel	novel	NOUN
2b88qc00j27	15	35	heterogeneous	heterogeneous	ADJ
2b88qc00j27	15	36	na	na	ADP
2b88qc00j27	15	37	method	method	NOUN
2b88qc00j27	15	38	.	.	PUNCT
2b88qc00j27	16	1	also	also	ADV
2b88qc00j27	16	2	,	,	PUNCT
2b88qc00j27	16	3	we	we	PRON
2b88qc00j27	16	4	develop	develop	VERB
2b88qc00j27	16	5	a	a	DET
2b88qc00j27	16	6	comprehensive	comprehensive	ADJ
2b88qc00j27	16	7	framework	framework	NOUN
2b88qc00j27	16	8	for	for	ADP
2b88qc00j27	16	9	alignment	alignment	NOUN
2b88qc00j27	16	10	-	-	PUNCT
2b88qc00j27	16	11	free	free	ADJ
2b88qc00j27	16	12	(	(	PUNCT
2b88qc00j27	16	13	as	as	SCONJ
2b88qc00j27	16	14	opposed	oppose	VERB
2b88qc00j27	16	15	to	to	ADP
2b88qc00j27	16	16	the	the	DET
2b88qc00j27	16	17	above	above	ADJ
2b88qc00j27	16	18	alignment	alignment	NOUN
2b88qc00j27	16	19	-	-	PUNCT
2b88qc00j27	16	20	based	base	VERB
2b88qc00j27	16	21	)	)	PUNCT
2b88qc00j27	16	22	network	network	NOUN
2b88qc00j27	16	23	comparison	comparison	NOUN
2b88qc00j27	16	24	,	,	PUNCT
2b88qc00j27	16	25	which	which	PRON
2b88qc00j27	16	26	can	can	AUX
2b88qc00j27	16	27	deal	deal	VERB
2b88qc00j27	16	28	with	with	ADP
2b88qc00j27	16	29	multiple	multiple	ADJ
2b88qc00j27	16	30	data	datum	NOUN
2b88qc00j27	16	31	types	type	NOUN
2b88qc00j27	16	32	.	.	PUNCT
2b88qc00j27	17	1	5	5	X
2b88qc00j27	17	2	)	)	PUNCT
2b88qc00j27	17	3	we	we	PRON
2b88qc00j27	17	4	use	use	VERB
2b88qc00j27	17	5	the	the	DET
2b88qc00j27	17	6	above	above	ADJ
2b88qc00j27	17	7	approaches	approach	NOUN
2b88qc00j27	17	8	to	to	PART
2b88qc00j27	17	9	study	study	VERB
2b88qc00j27	17	10	human	human	ADJ
2b88qc00j27	17	11	aging	aging	NOUN
2b88qc00j27	17	12	and	and	CCONJ
2b88qc00j27	17	13	for	for	ADP
2b88qc00j27	17	14	protein	protein	NOUN
2b88qc00j27	17	15	classification	classification	NOUN
2b88qc00j27	17	16	.	.	PUNCT
2b88qc00j27	18	1	further	far	ADV
2b88qc00j27	18	2	,	,	PUNCT
2b88qc00j27	18	3	we	we	PRON
2b88qc00j27	18	4	carry	carry	VERB
2b88qc00j27	18	5	out	out	ADP
2b88qc00j27	18	6	a	a	DET
2b88qc00j27	18	7	collaborative	collaborative	ADJ
2b88qc00j27	18	8	application	application	NOUN
2b88qc00j27	18	9	of	of	ADP
2b88qc00j27	18	10	network	network	NOUN
2b88qc00j27	18	11	-	-	PUNCT
2b88qc00j27	18	12	based	base	VERB
2b88qc00j27	18	13	analyses	analysis	NOUN
2b88qc00j27	18	14	of	of	ADP
2b88qc00j27	18	15	the	the	DET
2b88qc00j27	18	16	human	human	ADJ
2b88qc00j27	18	17	ubiquitin	ubiquitin	ADJ
2b88qc00j27	18	18	-	-	PUNCT
2b88qc00j27	18	19	proteasome	proteasome	NOUN
2b88qc00j27	18	20	system	system	NOUN
2b88qc00j27	18	21	.	.	PUNCT