id	sid	tid	token	lemma	pos
0c483j35k1t	1	1	one	one	NUM
0c483j35k1t	1	2	of	of	ADP
0c483j35k1t	1	3	the	the	DET
0c483j35k1t	1	4	primary	primary	ADJ
0c483j35k1t	1	5	functions	function	NOUN
0c483j35k1t	1	6	of	of	ADP
0c483j35k1t	1	7	the	the	DET
0c483j35k1t	1	8	cell	cell	NOUN
0c483j35k1t	1	9	mediated	mediate	VERB
0c483j35k1t	1	10	immune	immune	ADJ
0c483j35k1t	1	11	response	response	NOUN
0c483j35k1t	1	12	is	be	AUX
0c483j35k1t	1	13	the	the	DET
0c483j35k1t	1	14	recognition	recognition	NOUN
0c483j35k1t	1	15	and	and	CCONJ
0c483j35k1t	1	16	elimination	elimination	NOUN
0c483j35k1t	1	17	of	of	ADP
0c483j35k1t	1	18	infected	infected	ADJ
0c483j35k1t	1	19	or	or	CCONJ
0c483j35k1t	1	20	damaged	damaged	ADJ
0c483j35k1t	1	21	cells	cell	NOUN
0c483j35k1t	1	22	.	.	PUNCT
0c483j35k1t	2	1	this	this	DET
0c483j35k1t	2	2	process	process	NOUN
0c483j35k1t	2	3	is	be	AUX
0c483j35k1t	2	4	facilitated	facilitate	VERB
0c483j35k1t	2	5	through	through	ADP
0c483j35k1t	2	6	the	the	DET
0c483j35k1t	2	7	interactions	interaction	NOUN
0c483j35k1t	2	8	between	between	ADP
0c483j35k1t	2	9	the	the	DET
0c483j35k1t	2	10	t	t	PROPN
0c483j35k1t	2	11	lymphocyte	lymphocyte	NOUN
0c483j35k1t	2	12	cell	cell	NOUN
0c483j35k1t	2	13	surface	surface	NOUN
0c483j35k1t	2	14	receptor	receptor	NOUN
0c483j35k1t	2	15	,	,	PUNCT
0c483j35k1t	2	16	or	or	CCONJ
0c483j35k1t	2	17	t	t	PROPN
0c483j35k1t	2	18	-	-	PUNCT
0c483j35k1t	2	19	cell	cell	NOUN
0c483j35k1t	2	20	receptor	receptor	NOUN
0c483j35k1t	2	21	,	,	PUNCT
0c483j35k1t	2	22	and	and	CCONJ
0c483j35k1t	2	23	a	a	DET
0c483j35k1t	2	24	major	major	ADJ
0c483j35k1t	2	25	histocompatibility	histocompatibility	NOUN
0c483j35k1t	2	26	complex	complex	NOUN
0c483j35k1t	2	27	,	,	PUNCT
0c483j35k1t	2	28	or	or	CCONJ
0c483j35k1t	2	29	mhc	mhc	ADV
0c483j35k1t	2	30	,	,	PUNCT
0c483j35k1t	2	31	presenting	present	VERB
0c483j35k1t	2	32	a	a	DET
0c483j35k1t	2	33	peptide	peptide	NOUN
0c483j35k1t	2	34	on	on	ADP
0c483j35k1t	2	35	the	the	DET
0c483j35k1t	2	36	surface	surface	NOUN
0c483j35k1t	2	37	of	of	ADP
0c483j35k1t	2	38	antigen	antigen	NOUN
0c483j35k1t	2	39	presenting	present	VERB
0c483j35k1t	2	40	cells	cell	NOUN
0c483j35k1t	2	41	.	.	PUNCT
0c483j35k1t	3	1	if	if	SCONJ
0c483j35k1t	3	2	the	the	DET
0c483j35k1t	3	3	affinity	affinity	NOUN
0c483j35k1t	3	4	between	between	ADP
0c483j35k1t	3	5	these	these	DET
0c483j35k1t	3	6	two	two	NUM
0c483j35k1t	3	7	molecules	molecule	NOUN
0c483j35k1t	3	8	is	be	AUX
0c483j35k1t	3	9	strong	strong	ADJ
0c483j35k1t	3	10	enough	enough	ADV
0c483j35k1t	3	11	,	,	PUNCT
0c483j35k1t	3	12	the	the	DET
0c483j35k1t	3	13	t	t	PROPN
0c483j35k1t	3	14	-	-	PUNCT
0c483j35k1t	3	15	cell	cell	NOUN
0c483j35k1t	3	16	will	will	AUX
0c483j35k1t	3	17	become	become	VERB
0c483j35k1t	3	18	activated	activate	VERB
0c483j35k1t	3	19	and	and	CCONJ
0c483j35k1t	3	20	mount	mount	VERB
0c483j35k1t	3	21	an	an	DET
0c483j35k1t	3	22	immune	immune	ADJ
0c483j35k1t	3	23	response	response	NOUN
0c483j35k1t	3	24	against	against	ADP
0c483j35k1t	3	25	the	the	DET
0c483j35k1t	3	26	antigen	antigen	NOUN
0c483j35k1t	3	27	presenting	present	VERB
0c483j35k1t	3	28	cell	cell	NOUN
0c483j35k1t	3	29	.	.	PUNCT
0c483j35k1t	4	1	amazingly	amazingly	ADV
0c483j35k1t	4	2	,	,	PUNCT
0c483j35k1t	4	3	while	while	SCONJ
0c483j35k1t	4	4	a	a	DET
0c483j35k1t	4	5	single	single	ADJ
0c483j35k1t	4	6	tcr	tcr	NOUN
0c483j35k1t	4	7	can	can	AUX
0c483j35k1t	4	8	recognize	recognize	VERB
0c483j35k1t	4	9	over	over	ADP
0c483j35k1t	4	10	a	a	DET
0c483j35k1t	4	11	million	million	NUM
0c483j35k1t	4	12	peptide	peptide	NOUN
0c483j35k1t	4	13	-	-	PUNCT
0c483j35k1t	4	14	mhc	mhc	NOUN
0c483j35k1t	4	15	ligands	ligand	NOUN
0c483j35k1t	4	16	,	,	PUNCT
0c483j35k1t	4	17	it	it	PRON
0c483j35k1t	4	18	is	be	AUX
0c483j35k1t	4	19	still	still	ADV
0c483j35k1t	4	20	able	able	ADJ
0c483j35k1t	4	21	to	to	PART
0c483j35k1t	4	22	discriminate	discriminate	VERB
0c483j35k1t	4	23	between	between	ADP
0c483j35k1t	4	24	peptides	peptide	NOUN
0c483j35k1t	4	25	sourced	source	VERB
0c483j35k1t	4	26	from	from	ADP
0c483j35k1t	4	27	normal	normal	ADJ
0c483j35k1t	4	28	and	and	CCONJ
0c483j35k1t	4	29	aberrant	aberrant	ADJ
0c483j35k1t	4	30	expression	expression	NOUN
0c483j35k1t	4	31	.	.	PUNCT
0c483j35k1t	5	1	through	through	ADP
0c483j35k1t	5	2	the	the	DET
0c483j35k1t	5	3	study	study	NOUN
0c483j35k1t	5	4	of	of	ADP
0c483j35k1t	5	5	crystal	crystal	PROPN
0c483j35k1t	5	6	structures	structure	NOUN
0c483j35k1t	5	7	,	,	PUNCT
0c483j35k1t	5	8	this	this	DET
0c483j35k1t	5	9	specificity	specificity	NOUN
0c483j35k1t	5	10	and	and	CCONJ
0c483j35k1t	5	11	cross	cross	NOUN
0c483j35k1t	5	12	reactivity	reactivity	NOUN
0c483j35k1t	5	13	has	have	AUX
0c483j35k1t	5	14	been	be	AUX
0c483j35k1t	5	15	attributed	attribute	VERB
0c483j35k1t	5	16	to	to	ADP
0c483j35k1t	5	17	a	a	DET
0c483j35k1t	5	18	structural	structural	ADJ
0c483j35k1t	5	19	and	and	CCONJ
0c483j35k1t	5	20	chemical	chemical	ADJ
0c483j35k1t	5	21	homology	homology	NOUN
0c483j35k1t	5	22	between	between	ADP
0c483j35k1t	5	23	the	the	DET
0c483j35k1t	5	24	tcr	tcr	NOUN
0c483j35k1t	5	25	and	and	CCONJ
0c483j35k1t	5	26	the	the	DET
0c483j35k1t	5	27	peptide	peptide	NOUN
0c483j35k1t	5	28	-	-	PUNCT
0c483j35k1t	5	29	mhc	mhc	NOUN
0c483j35k1t	5	30	.	.	PUNCT
0c483j35k1t	6	1	while	while	SCONJ
0c483j35k1t	6	2	the	the	DET
0c483j35k1t	6	3	structural	structural	ADJ
0c483j35k1t	6	4	and	and	CCONJ
0c483j35k1t	6	5	chemical	chemical	ADJ
0c483j35k1t	6	6	compatibility	compatibility	NOUN
0c483j35k1t	6	7	between	between	ADP
0c483j35k1t	6	8	the	the	DET
0c483j35k1t	6	9	tcr	tcr	NOUN
0c483j35k1t	6	10	and	and	CCONJ
0c483j35k1t	6	11	peptidemhc	peptidemhc	NOUN
0c483j35k1t	6	12	is	be	AUX
0c483j35k1t	6	13	essential	essential	ADJ
0c483j35k1t	6	14	for	for	ADP
0c483j35k1t	6	15	conducive	conducive	ADJ
0c483j35k1t	6	16	interactions	interaction	NOUN
0c483j35k1t	6	17	,	,	PUNCT
0c483j35k1t	6	18	these	these	DET
0c483j35k1t	6	19	two	two	NUM
0c483j35k1t	6	20	things	thing	NOUN
0c483j35k1t	6	21	alone	alone	ADJ
0c483j35k1t	6	22	neglect	neglect	VERB
0c483j35k1t	6	23	to	to	PART
0c483j35k1t	6	24	account	account	VERB
0c483j35k1t	6	25	for	for	ADP
0c483j35k1t	6	26	the	the	DET
0c483j35k1t	6	27	inherent	inherent	ADJ
0c483j35k1t	6	28	dynamics	dynamic	NOUN
0c483j35k1t	6	29	of	of	ADP
0c483j35k1t	6	30	these	these	DET
0c483j35k1t	6	31	molecules	molecule	NOUN
0c483j35k1t	6	32	.	.	PUNCT
0c483j35k1t	7	1	conformational	conformational	ADJ
0c483j35k1t	7	2	diversity	diversity	NOUN
0c483j35k1t	7	3	,	,	PUNCT
0c483j35k1t	7	4	and	and	CCONJ
0c483j35k1t	7	5	by	by	ADP
0c483j35k1t	7	6	association	association	NOUN
0c483j35k1t	7	7	protein	protein	NOUN
0c483j35k1t	7	8	dynamics	dynamic	NOUN
0c483j35k1t	7	9	,	,	PUNCT
0c483j35k1t	7	10	has	have	AUX
0c483j35k1t	7	11	been	be	AUX
0c483j35k1t	7	12	observed	observe	VERB
0c483j35k1t	7	13	for	for	ADP
0c483j35k1t	7	14	all	all	DET
0c483j35k1t	7	15	three	three	NUM
0c483j35k1t	7	16	components	component	NOUN
0c483j35k1t	7	17	of	of	ADP
0c483j35k1t	7	18	this	this	DET
0c483j35k1t	7	19	interaction	interaction	NOUN
0c483j35k1t	7	20	;	;	PUNCT
0c483j35k1t	7	21	the	the	DET
0c483j35k1t	7	22	tcr	tcr	NOUN
0c483j35k1t	7	23	,	,	PUNCT
0c483j35k1t	7	24	peptide	peptide	NOUN
0c483j35k1t	7	25	and	and	CCONJ
0c483j35k1t	7	26	mhc	mhc	NOUN
0c483j35k1t	7	27	.	.	PUNCT
0c483j35k1t	8	1	the	the	DET
0c483j35k1t	8	2	magnitude	magnitude	NOUN
0c483j35k1t	8	3	of	of	ADP
0c483j35k1t	8	4	protein	protein	NOUN
0c483j35k1t	8	5	motion	motion	NOUN
0c483j35k1t	8	6	,	,	PUNCT
0c483j35k1t	8	7	however	however	ADV
0c483j35k1t	8	8	,	,	PUNCT
0c483j35k1t	8	9	is	be	AUX
0c483j35k1t	8	10	not	not	PART
0c483j35k1t	8	11	conserved	conserve	VERB
0c483j35k1t	8	12	for	for	ADP
0c483j35k1t	8	13	any	any	DET
0c483j35k1t	8	14	one	one	NUM
0c483j35k1t	8	15	of	of	ADP
0c483j35k1t	8	16	these	these	DET
0c483j35k1t	8	17	molecules	molecule	NOUN
0c483j35k1t	8	18	.	.	PUNCT
0c483j35k1t	9	1	as	as	ADP
0c483j35k1t	9	2	such	such	ADJ
0c483j35k1t	9	3	,	,	PUNCT
0c483j35k1t	9	4	it	it	PRON
0c483j35k1t	9	5	stands	stand	VERB
0c483j35k1t	9	6	to	to	PART
0c483j35k1t	9	7	reason	reason	VERB
0c483j35k1t	9	8	that	that	SCONJ
0c483j35k1t	9	9	differential	differential	ADJ
0c483j35k1t	9	10	dynamics	dynamic	NOUN
0c483j35k1t	9	11	for	for	ADP
0c483j35k1t	9	12	any	any	PRON
0c483j35k1t	9	13	of	of	ADP
0c483j35k1t	9	14	these	these	DET
0c483j35k1t	9	15	molecules	molecule	NOUN
0c483j35k1t	9	16	can	can	AUX
0c483j35k1t	9	17	have	have	VERB
0c483j35k1t	9	18	a	a	DET
0c483j35k1t	9	19	direct	direct	ADJ
0c483j35k1t	9	20	impact	impact	NOUN
0c483j35k1t	9	21	on	on	ADP
0c483j35k1t	9	22	the	the	DET
0c483j35k1t	9	23	recognition	recognition	NOUN
0c483j35k1t	9	24	of	of	ADP
0c483j35k1t	9	25	a	a	DET
0c483j35k1t	9	26	peptide	peptide	NOUN
0c483j35k1t	9	27	-	-	PUNCT
0c483j35k1t	9	28	mhc	mhc	NOUN
0c483j35k1t	9	29	by	by	ADP
0c483j35k1t	9	30	a	a	DET
0c483j35k1t	9	31	tcr	tcr	NOUN
0c483j35k1t	9	32	.	.	PUNCT
0c483j35k1t	10	1	to	to	ADP
0c483j35k1t	10	2	that	that	DET
0c483j35k1t	10	3	end	end	NOUN
0c483j35k1t	10	4	,	,	PUNCT
0c483j35k1t	10	5	in	in	ADP
0c483j35k1t	10	6	this	this	DET
0c483j35k1t	10	7	dissertation	dissertation	NOUN
0c483j35k1t	10	8	i	i	PRON
0c483j35k1t	10	9	address	address	VERB
0c483j35k1t	10	10	the	the	DET
0c483j35k1t	10	11	differential	differential	ADJ
0c483j35k1t	10	12	dynamics	dynamic	NOUN
0c483j35k1t	10	13	of	of	ADP
0c483j35k1t	10	14	these	these	DET
0c483j35k1t	10	15	molecules	molecule	NOUN
0c483j35k1t	10	16	.	.	PUNCT
0c483j35k1t	11	1	through	through	ADP
0c483j35k1t	11	2	the	the	DET
0c483j35k1t	11	3	use	use	NOUN
0c483j35k1t	11	4	of	of	ADP
0c483j35k1t	11	5	molecular	molecular	ADJ
0c483j35k1t	11	6	dynamics	dynamic	NOUN
0c483j35k1t	11	7	simulations	simulation	NOUN
0c483j35k1t	11	8	,	,	PUNCT
0c483j35k1t	11	9	i	i	PRON
0c483j35k1t	11	10	decomposed	decompose	VERB
0c483j35k1t	11	11	differences	difference	NOUN
0c483j35k1t	11	12	in	in	ADP
0c483j35k1t	11	13	protein	protein	NOUN
0c483j35k1t	11	14	motion	motion	NOUN
0c483j35k1t	11	15	for	for	ADP
0c483j35k1t	11	16	all	all	DET
0c483j35k1t	11	17	components	component	NOUN
0c483j35k1t	11	18	in	in	ADP
0c483j35k1t	11	19	the	the	DET
0c483j35k1t	11	20	tcr	tcr	PROPN
0c483j35k1t	11	21	/	/	SYM
0c483j35k1t	11	22	peptide	peptide	NOUN
0c483j35k1t	11	23	-	-	PUNCT
0c483j35k1t	11	24	mhc	mhc	NOUN
0c483j35k1t	11	25	complex	complex	NOUN
0c483j35k1t	11	26	.	.	PUNCT
0c483j35k1t	12	1	through	through	ADP
0c483j35k1t	12	2	critical	critical	ADJ
0c483j35k1t	12	3	analysis	analysis	NOUN
0c483j35k1t	12	4	of	of	ADP
0c483j35k1t	12	5	these	these	DET
0c483j35k1t	12	6	simulations	simulation	NOUN
0c483j35k1t	12	7	,	,	PUNCT
0c483j35k1t	12	8	i	i	PRON
0c483j35k1t	12	9	was	be	AUX
0c483j35k1t	12	10	able	able	ADJ
0c483j35k1t	12	11	to	to	PART
0c483j35k1t	12	12	identify	identify	VERB
0c483j35k1t	12	13	key	key	ADJ
0c483j35k1t	12	14	differences	difference	NOUN
0c483j35k1t	12	15	in	in	ADP
0c483j35k1t	12	16	dynamics	dynamic	NOUN
0c483j35k1t	12	17	for	for	ADP
0c483j35k1t	12	18	each	each	PRON
0c483j35k1t	12	19	of	of	ADP
0c483j35k1t	12	20	the	the	DET
0c483j35k1t	12	21	three	three	NUM
0c483j35k1t	12	22	proteins	protein	NOUN
0c483j35k1t	12	23	involved	involve	VERB
0c483j35k1t	12	24	.	.	PUNCT
0c483j35k1t	13	1	i	i	PRON
0c483j35k1t	13	2	was	be	AUX
0c483j35k1t	13	3	able	able	ADJ
0c483j35k1t	13	4	to	to	PART
0c483j35k1t	13	5	correlate	correlate	VERB
0c483j35k1t	13	6	these	these	DET
0c483j35k1t	13	7	differential	differential	ADJ
0c483j35k1t	13	8	dynamics	dynamic	NOUN
0c483j35k1t	13	9	to	to	ADP
0c483j35k1t	13	10	differences	difference	NOUN
0c483j35k1t	13	11	in	in	ADP
0c483j35k1t	13	12	mechanisms	mechanism	NOUN
0c483j35k1t	13	13	of	of	ADP
0c483j35k1t	13	14	cross	cross	NOUN
0c483j35k1t	13	15	reactivity	reactivity	NOUN
0c483j35k1t	13	16	,	,	PUNCT
0c483j35k1t	13	17	specificity	specificity	NOUN
0c483j35k1t	13	18	and	and	CCONJ
0c483j35k1t	13	19	immunogenicity	immunogenicity	NOUN
0c483j35k1t	13	20	.	.	PUNCT
0c483j35k1t	14	1	while	while	SCONJ
0c483j35k1t	14	2	much	much	ADJ
0c483j35k1t	14	3	is	be	AUX
0c483j35k1t	14	4	left	leave	VERB
0c483j35k1t	14	5	to	to	PART
0c483j35k1t	14	6	be	be	AUX
0c483j35k1t	14	7	done	do	VERB
0c483j35k1t	14	8	,	,	PUNCT
0c483j35k1t	14	9	the	the	DET
0c483j35k1t	14	10	data	datum	NOUN
0c483j35k1t	14	11	presented	present	VERB
0c483j35k1t	14	12	herein	herein	ADV
0c483j35k1t	14	13	demonstrate	demonstrate	VERB
0c483j35k1t	14	14	the	the	DET
0c483j35k1t	14	15	clear	clear	ADJ
0c483j35k1t	14	16	role	role	NOUN
0c483j35k1t	14	17	that	that	PRON
0c483j35k1t	14	18	differential	differential	ADJ
0c483j35k1t	14	19	dynamics	dynamic	NOUN
0c483j35k1t	14	20	play	play	VERB
0c483j35k1t	14	21	in	in	ADP
0c483j35k1t	14	22	immunological	immunological	ADJ
0c483j35k1t	14	23	recognition	recognition	NOUN
0c483j35k1t	14	24	.	.	PUNCT