id	sid	tid	token	lemma	pos
00000001s3f	1	1	the	the	DET
00000001s3f	1	2	work	work	NOUN
00000001s3f	1	3	presented	present	VERB
00000001s3f	1	4	here	here	ADV
00000001s3f	1	5	has	have	VERB
00000001s3f	1	6	two	two	NUM
00000001s3f	1	7	primary	primary	ADJ
00000001s3f	1	8	components	component	NOUN
00000001s3f	1	9	:	:	PUNCT
00000001s3f	1	10	1	1	X
00000001s3f	1	11	)	)	PUNCT
00000001s3f	1	12	the	the	DET
00000001s3f	1	13	identification	identification	NOUN
00000001s3f	1	14	and	and	CCONJ
00000001s3f	1	15	annotation	annotation	NOUN
00000001s3f	1	16	of	of	ADP
00000001s3f	1	17	transposable	transposable	ADJ
00000001s3f	1	18	elements	element	NOUN
00000001s3f	1	19	(	(	PUNCT
00000001s3f	1	20	tes	tes	X
00000001s3f	1	21	)	)	PUNCT
00000001s3f	1	22	and	and	CCONJ
00000001s3f	1	23	2	2	X
00000001s3f	1	24	)	)	PUNCT
00000001s3f	1	25	a	a	DET
00000001s3f	1	26	spatially	spatially	ADV
00000001s3f	1	27	-	-	PUNCT
00000001s3f	1	28	aware	aware	ADJ
00000001s3f	1	29	agent	agent	NOUN
00000001s3f	1	30	-	-	PUNCT
00000001s3f	1	31	based	base	VERB
00000001s3f	1	32	model	model	NOUN
00000001s3f	1	33	of	of	ADP
00000001s3f	1	34	pathogen	pathogen	PROPN
00000001s3f	1	35	transmission	transmission	PROPN
00000001s3f	1	36	.	.	PUNCT
00000001s3f	2	1	recent	recent	ADJ
00000001s3f	2	2	advances	advance	NOUN
00000001s3f	2	3	in	in	ADP
00000001s3f	2	4	sequencing	sequence	VERB
00000001s3f	2	5	technology	technology	NOUN
00000001s3f	2	6	have	have	AUX
00000001s3f	2	7	resulted	result	VERB
00000001s3f	2	8	in	in	ADP
00000001s3f	2	9	an	an	DET
00000001s3f	2	10	explosion	explosion	NOUN
00000001s3f	2	11	of	of	ADP
00000001s3f	2	12	genomic	genomic	ADJ
00000001s3f	2	13	data	datum	NOUN
00000001s3f	2	14	.	.	PUNCT
00000001s3f	3	1	the	the	DET
00000001s3f	3	2	identification	identification	NOUN
00000001s3f	3	3	of	of	ADP
00000001s3f	3	4	tes	tes	X
00000001s3f	3	5	is	be	AUX
00000001s3f	3	6	an	an	DET
00000001s3f	3	7	important	important	ADJ
00000001s3f	3	8	part	part	NOUN
00000001s3f	3	9	of	of	ADP
00000001s3f	3	10	every	every	DET
00000001s3f	3	11	genome	genome	NOUN
00000001s3f	3	12	project	project	NOUN
00000001s3f	3	13	.	.	PUNCT
00000001s3f	4	1	this	this	DET
00000001s3f	4	2	dissertation	dissertation	NOUN
00000001s3f	4	3	presents	present	VERB
00000001s3f	4	4	an	an	DET
00000001s3f	4	5	automated	automate	VERB
00000001s3f	4	6	homology	homology	NOUN
00000001s3f	4	7	-	-	PUNCT
00000001s3f	4	8	based	base	VERB
00000001s3f	4	9	approach	approach	NOUN
00000001s3f	4	10	to	to	PART
00000001s3f	4	11	identify	identify	VERB
00000001s3f	4	12	tes	tes	X
00000001s3f	4	13	,	,	PUNCT
00000001s3f	4	14	implemented	implement	VERB
00000001s3f	4	15	as	as	ADP
00000001s3f	4	16	teseeker	teseeker	NOUN
00000001s3f	4	17	,	,	PUNCT
00000001s3f	4	18	that	that	PRON
00000001s3f	4	19	produces	produce	VERB
00000001s3f	4	20	consensus	consensus	NOUN
00000001s3f	4	21	tes	tes	X
00000001s3f	4	22	up	up	ADP
00000001s3f	4	23	to	to	PART
00000001s3f	4	24	98	98	NUM
00000001s3f	4	25	identical	identical	ADJ
00000001s3f	4	26	to	to	PART
00000001s3f	4	27	manually	manually	ADV
00000001s3f	4	28	annotated	annotate	VERB
00000001s3f	4	29	sequences	sequence	NOUN
00000001s3f	4	30	.	.	PUNCT
00000001s3f	5	1	it	it	PRON
00000001s3f	5	2	also	also	ADV
00000001s3f	5	3	offers	offer	VERB
00000001s3f	5	4	a	a	DET
00000001s3f	5	5	design	design	NOUN
00000001s3f	5	6	and	and	CCONJ
00000001s3f	5	7	implementation	implementation	NOUN
00000001s3f	5	8	plan	plan	NOUN
00000001s3f	5	9	to	to	PART
00000001s3f	5	10	allow	allow	VERB
00000001s3f	5	11	for	for	ADP
00000001s3f	5	12	the	the	DET
00000001s3f	5	13	inclusion	inclusion	NOUN
00000001s3f	5	14	of	of	ADP
00000001s3f	5	15	tes	tes	X
00000001s3f	5	16	on	on	ADP
00000001s3f	5	17	vectorbase	vectorbase	NOUN
00000001s3f	5	18	's	's	PART
00000001s3f	5	19	community	community	NOUN
00000001s3f	5	20	annotation	annotation	NOUN
00000001s3f	5	21	pipeline	pipeline	NOUN
00000001s3f	5	22	.	.	PUNCT
00000001s3f	6	1	agent	agent	NOUN
00000001s3f	6	2	-	-	PUNCT
00000001s3f	6	3	based	base	VERB
00000001s3f	6	4	modeling	modeling	NOUN
00000001s3f	6	5	is	be	AUX
00000001s3f	6	6	very	very	ADV
00000001s3f	6	7	adept	adept	ADJ
00000001s3f	6	8	at	at	ADP
00000001s3f	6	9	modeling	model	VERB
00000001s3f	6	10	natural	natural	ADJ
00000001s3f	6	11	phenomena	phenomena	NOUN
00000001s3f	6	12	.	.	PUNCT
00000001s3f	7	1	coupling	couple	VERB
00000001s3f	7	2	geographical	geographical	ADJ
00000001s3f	7	3	information	information	NOUN
00000001s3f	7	4	system	system	NOUN
00000001s3f	7	5	(	(	PUNCT
00000001s3f	7	6	gis	gis	PROPN
00000001s3f	7	7	)	)	PUNCT
00000001s3f	7	8	data	datum	NOUN
00000001s3f	7	9	with	with	ADP
00000001s3f	7	10	agent	agent	NOUN
00000001s3f	7	11	-	-	PUNCT
00000001s3f	7	12	based	base	VERB
00000001s3f	7	13	modeling	modeling	NOUN
00000001s3f	7	14	further	far	ADV
00000001s3f	7	15	increases	increase	VERB
00000001s3f	7	16	the	the	DET
00000001s3f	7	17	utility	utility	NOUN
00000001s3f	7	18	of	of	ADP
00000001s3f	7	19	such	such	ADJ
00000001s3f	7	20	simulations	simulation	NOUN
00000001s3f	7	21	.	.	PUNCT
00000001s3f	8	1	this	this	DET
00000001s3f	8	2	dissertation	dissertation	NOUN
00000001s3f	8	3	presents	present	VERB
00000001s3f	8	4	a	a	DET
00000001s3f	8	5	gis	gis	PROPN
00000001s3f	8	6	aware	aware	ADJ
00000001s3f	8	7	agent	agent	NOUN
00000001s3f	8	8	-	-	PUNCT
00000001s3f	8	9	based	base	VERB
00000001s3f	8	10	model	model	NOUN
00000001s3f	8	11	of	of	ADP
00000001s3f	8	12	pathogen	pathogen	PROPN
00000001s3f	8	13	transmission	transmission	NOUN
00000001s3f	8	14	as	as	ADV
00000001s3f	8	15	well	well	ADV
00000001s3f	8	16	as	as	ADP
00000001s3f	8	17	methods	method	NOUN
00000001s3f	8	18	and	and	CCONJ
00000001s3f	8	19	recommendations	recommendation	NOUN
00000001s3f	8	20	for	for	ADP
00000001s3f	8	21	incorporating	incorporate	VERB
00000001s3f	8	22	gis	gis	PROPN
00000001s3f	8	23	data	datum	NOUN
00000001s3f	8	24	into	into	ADP
00000001s3f	8	25	a	a	DET
00000001s3f	8	26	simulation	simulation	NOUN
00000001s3f	8	27	.	.	PUNCT
00000001s3f	9	1	the	the	DET
00000001s3f	9	2	model	model	NOUN
00000001s3f	9	3	,	,	PUNCT
00000001s3f	9	4	named	name	VERB
00000001s3f	9	5	link	link	NOUN
00000001s3f	9	6	,	,	PUNCT
00000001s3f	9	7	was	be	AUX
00000001s3f	9	8	specifically	specifically	ADV
00000001s3f	9	9	developed	develop	VERB
00000001s3f	9	10	to	to	PART
00000001s3f	9	11	study	study	VERB
00000001s3f	9	12	the	the	DET
00000001s3f	9	13	impact	impact	NOUN
00000001s3f	9	14	of	of	ADP
00000001s3f	9	15	landscape	landscape	NOUN
00000001s3f	9	16	on	on	ADP
00000001s3f	9	17	pathogen	pathogen	PROPN
00000001s3f	9	18	transmission	transmission	PROPN
00000001s3f	9	19	.	.	PUNCT