id sid tid token lemma pos 10_1101-2020_01_28_923532 1 1 The the DT 10_1101-2020_01_28_923532 1 2 Landscape Landscape NNP 10_1101-2020_01_28_923532 1 3 of of IN 10_1101-2020_01_28_923532 1 4 Precision Precision NNP 10_1101-2020_01_28_923532 1 5 Cancer Cancer NNP 10_1101-2020_01_28_923532 1 6 Combination Combination NNP 10_1101-2020_01_28_923532 1 7 Therapy therapy NN 10_1101-2020_01_28_923532 1 8 : : : 10_1101-2020_01_28_923532 1 9 A a DT 10_1101-2020_01_28_923532 1 10 Single single JJ 10_1101-2020_01_28_923532 1 11 - - HYPH 10_1101-2020_01_28_923532 1 12 Cell cell NN 10_1101-2020_01_28_923532 1 13 Perspective perspective NN 10_1101-2020_01_28_923532 1 14 1 1 CD 10_1101-2020_01_28_923532 1 15 The the DT 10_1101-2020_01_28_923532 1 16 Landscape Landscape NNP 10_1101-2020_01_28_923532 1 17 of of IN 10_1101-2020_01_28_923532 1 18 Precision Precision NNP 10_1101-2020_01_28_923532 1 19 Cancer Cancer NNP 10_1101-2020_01_28_923532 1 20 Combination Combination NNP 10_1101-2020_01_28_923532 1 21 Therapy therapy NN 10_1101-2020_01_28_923532 1 22 : : : 10_1101-2020_01_28_923532 1 23 A a DT 10_1101-2020_01_28_923532 1 24 Single single JJ 10_1101-2020_01_28_923532 1 25 - - HYPH 10_1101-2020_01_28_923532 1 26 Cell Cell NNP 10_1101-2020_01_28_923532 1 27 Perspective Perspective NNP 10_1101-2020_01_28_923532 1 28 Saba Saba NNP 10_1101-2020_01_28_923532 1 29 Ahmadi1,7^ Ahmadi1,7^ NNP 10_1101-2020_01_28_923532 1 30 , , , 10_1101-2020_01_28_923532 1 31 Pattara Pattara NNP 10_1101-2020_01_28_923532 1 32 Sukprasert2,8^ sukprasert2,8^ CD 10_1101-2020_01_28_923532 1 33 , , , 10_1101-2020_01_28_923532 1 34 Rahulsimham Rahulsimham NNP 10_1101-2020_01_28_923532 1 35 Vegesna3 Vegesna3 NNP 10_1101-2020_01_28_923532 1 36 , , , 10_1101-2020_01_28_923532 1 37 Sanju Sanju NNP 10_1101-2020_01_28_923532 1 38 Sinha3 Sinha3 NNP 10_1101-2020_01_28_923532 1 39 , , , 10_1101-2020_01_28_923532 1 40 Fiorella Fiorella NNP 10_1101-2020_01_28_923532 1 41 Schischlik3 Schischlik3 NNP 10_1101-2020_01_28_923532 1 42 , , , 10_1101-2020_01_28_923532 1 43 Natalie Natalie NNP 10_1101-2020_01_28_923532 1 44 Artzi4,5,6 Artzi4,5,6 NNP 10_1101-2020_01_28_923532 1 45 , , , 10_1101-2020_01_28_923532 1 46 Samir Samir NNP 10_1101-2020_01_28_923532 1 47 Khuller2,8 Khuller2,8 NFP 10_1101-2020_01_28_923532 1 48 , , , 10_1101-2020_01_28_923532 1 49 Alejandro Alejandro NNP 10_1101-2020_01_28_923532 1 50 A. A. NNP 10_1101-2020_01_28_923532 1 51 Schäffer3 Schäffer3 NNP 10_1101-2020_01_28_923532 1 52 * * NFP 10_1101-2020_01_28_923532 1 53 , , , 10_1101-2020_01_28_923532 1 54 Eytan Eytan NNP 10_1101-2020_01_28_923532 1 55 Ruppin3 Ruppin3 NNP 10_1101-2020_01_28_923532 1 56 * * NFP 10_1101-2020_01_28_923532 1 57 1 1 CD 10_1101-2020_01_28_923532 1 58 Dept dept NN 10_1101-2020_01_28_923532 1 59 . . . 10_1101-2020_01_28_923532 2 1 of of IN 10_1101-2020_01_28_923532 2 2 Computer Computer NNP 10_1101-2020_01_28_923532 2 3 Science Science NNP 10_1101-2020_01_28_923532 2 4 , , , 10_1101-2020_01_28_923532 2 5 University University NNP 10_1101-2020_01_28_923532 2 6 of of IN 10_1101-2020_01_28_923532 2 7 Maryland Maryland NNP 10_1101-2020_01_28_923532 2 8 , , , 10_1101-2020_01_28_923532 2 9 College College NNP 10_1101-2020_01_28_923532 2 10 Park Park NNP 10_1101-2020_01_28_923532 2 11 MD MD NNP 10_1101-2020_01_28_923532 2 12 20742 20742 CD 10_1101-2020_01_28_923532 2 13 USA USA NNP 10_1101-2020_01_28_923532 2 14 2 2 CD 10_1101-2020_01_28_923532 2 15 Dept Dept NNP 10_1101-2020_01_28_923532 2 16 . . . 10_1101-2020_01_28_923532 3 1 of of IN 10_1101-2020_01_28_923532 3 2 Computer Computer NNP 10_1101-2020_01_28_923532 3 3 Science Science NNP 10_1101-2020_01_28_923532 3 4 , , , 10_1101-2020_01_28_923532 3 5 Northwestern Northwestern NNP 10_1101-2020_01_28_923532 3 6 University University NNP 10_1101-2020_01_28_923532 3 7 , , , 10_1101-2020_01_28_923532 3 8 Evanston Evanston NNP 10_1101-2020_01_28_923532 3 9 IL IL NNP 10_1101-2020_01_28_923532 3 10 60208 60208 CD 10_1101-2020_01_28_923532 3 11 USA USA NNP 10_1101-2020_01_28_923532 3 12 3 3 CD 10_1101-2020_01_28_923532 3 13 Cancer Cancer NNP 10_1101-2020_01_28_923532 3 14 Data Data NNP 10_1101-2020_01_28_923532 3 15 Science Science NNP 10_1101-2020_01_28_923532 3 16 Laboratory Laboratory NNP 10_1101-2020_01_28_923532 3 17 , , , 10_1101-2020_01_28_923532 3 18 National National NNP 10_1101-2020_01_28_923532 3 19 Cancer Cancer NNP 10_1101-2020_01_28_923532 3 20 Institute Institute NNP 10_1101-2020_01_28_923532 3 21 , , , 10_1101-2020_01_28_923532 3 22 Bethesda Bethesda NNP 10_1101-2020_01_28_923532 3 23 , , , 10_1101-2020_01_28_923532 3 24 MD MD NNP 10_1101-2020_01_28_923532 3 25 20892 20892 CD 10_1101-2020_01_28_923532 3 26 USA USA NNP 10_1101-2020_01_28_923532 3 27 4 4 CD 10_1101-2020_01_28_923532 3 28 Dept Dept NNP 10_1101-2020_01_28_923532 3 29 . . . 10_1101-2020_01_28_923532 4 1 of of IN 10_1101-2020_01_28_923532 4 2 Medicine Medicine NNP 10_1101-2020_01_28_923532 4 3 , , , 10_1101-2020_01_28_923532 4 4 Engineering Engineering NNP 10_1101-2020_01_28_923532 4 5 in in IN 10_1101-2020_01_28_923532 4 6 Medicine Medicine NNP 10_1101-2020_01_28_923532 4 7 Division Division NNP 10_1101-2020_01_28_923532 4 8 , , , 10_1101-2020_01_28_923532 4 9 Brigham Brigham NNP 10_1101-2020_01_28_923532 4 10 and and CC 10_1101-2020_01_28_923532 4 11 Women Women NNP 10_1101-2020_01_28_923532 4 12 ’s ’s POS 10_1101-2020_01_28_923532 4 13 Hospital Hospital NNP 10_1101-2020_01_28_923532 4 14 , , , 10_1101-2020_01_28_923532 4 15 Harvard Harvard NNP 10_1101-2020_01_28_923532 4 16 Medical Medical NNP 10_1101-2020_01_28_923532 4 17 School School NNP 10_1101-2020_01_28_923532 4 18 , , , 10_1101-2020_01_28_923532 4 19 Boston Boston NNP 10_1101-2020_01_28_923532 4 20 , , , 10_1101-2020_01_28_923532 4 21 MA MA NNP 10_1101-2020_01_28_923532 4 22 02139 02139 CD 10_1101-2020_01_28_923532 4 23 USA USA NNP 10_1101-2020_01_28_923532 4 24 5 5 CD 10_1101-2020_01_28_923532 4 25 Broad Broad NNP 10_1101-2020_01_28_923532 4 26 Institute Institute NNP 10_1101-2020_01_28_923532 4 27 of of IN 10_1101-2020_01_28_923532 4 28 Harvard Harvard NNP 10_1101-2020_01_28_923532 4 29 and and CC 10_1101-2020_01_28_923532 4 30 MIT MIT NNP 10_1101-2020_01_28_923532 4 31 , , , 10_1101-2020_01_28_923532 4 32 Cambridge Cambridge NNP 10_1101-2020_01_28_923532 4 33 , , , 10_1101-2020_01_28_923532 4 34 MA MA NNP 10_1101-2020_01_28_923532 4 35 02139 02139 CD 10_1101-2020_01_28_923532 4 36 USA USA NNP 10_1101-2020_01_28_923532 4 37 6 6 CD 10_1101-2020_01_28_923532 4 38 Institute Institute NNP 10_1101-2020_01_28_923532 4 39 for for IN 10_1101-2020_01_28_923532 4 40 Medical Medical NNP 10_1101-2020_01_28_923532 4 41 Engineering Engineering NNP 10_1101-2020_01_28_923532 4 42 and and CC 10_1101-2020_01_28_923532 4 43 Science Science NNP 10_1101-2020_01_28_923532 4 44 , , , 10_1101-2020_01_28_923532 4 45 MIT MIT NNP 10_1101-2020_01_28_923532 4 46 , , , 10_1101-2020_01_28_923532 4 47 Cambridge Cambridge NNP 10_1101-2020_01_28_923532 4 48 , , , 10_1101-2020_01_28_923532 4 49 MA MA NNP 10_1101-2020_01_28_923532 4 50 02139 02139 CD 10_1101-2020_01_28_923532 4 51 USA USA NNP 10_1101-2020_01_28_923532 4 52 7 7 CD 10_1101-2020_01_28_923532 4 53 Part Part NNP 10_1101-2020_01_28_923532 4 54 of of IN 10_1101-2020_01_28_923532 4 55 this this DT 10_1101-2020_01_28_923532 4 56 research research NN 10_1101-2020_01_28_923532 4 57 done do VBN 10_1101-2020_01_28_923532 4 58 while while IN 10_1101-2020_01_28_923532 4 59 at at IN 10_1101-2020_01_28_923532 4 60 Dept Dept NNP 10_1101-2020_01_28_923532 4 61 . . . 10_1101-2020_01_28_923532 5 1 of of IN 10_1101-2020_01_28_923532 5 2 Computer Computer NNP 10_1101-2020_01_28_923532 5 3 Science Science NNP 10_1101-2020_01_28_923532 5 4 , , , 10_1101-2020_01_28_923532 5 5 Northwestern Northwestern NNP 10_1101-2020_01_28_923532 5 6 University University NNP 10_1101-2020_01_28_923532 5 7 , , , 10_1101-2020_01_28_923532 5 8 Evanston Evanston NNP 10_1101-2020_01_28_923532 5 9 IL IL NNP 10_1101-2020_01_28_923532 5 10 60208 60208 CD 10_1101-2020_01_28_923532 5 11 USA USA NNP 10_1101-2020_01_28_923532 5 12 8 8 CD 10_1101-2020_01_28_923532 5 13 Part part NN 10_1101-2020_01_28_923532 5 14 of of IN 10_1101-2020_01_28_923532 5 15 this this DT 10_1101-2020_01_28_923532 5 16 research research NN 10_1101-2020_01_28_923532 5 17 was be VBD 10_1101-2020_01_28_923532 5 18 done do VBN 10_1101-2020_01_28_923532 5 19 while while IN 10_1101-2020_01_28_923532 5 20 at at IN 10_1101-2020_01_28_923532 5 21 Dept Dept NNP 10_1101-2020_01_28_923532 5 22 . . . 10_1101-2020_01_28_923532 6 1 Computer Computer NNP 10_1101-2020_01_28_923532 6 2 Science Science NNP 10_1101-2020_01_28_923532 6 3 , , , 10_1101-2020_01_28_923532 6 4 University University NNP 10_1101-2020_01_28_923532 6 5 of of IN 10_1101-2020_01_28_923532 6 6 Maryland Maryland NNP 10_1101-2020_01_28_923532 6 7 , , , 10_1101-2020_01_28_923532 6 8 College College NNP 10_1101-2020_01_28_923532 6 9 Park Park NNP 10_1101-2020_01_28_923532 6 10 MD MD NNP 10_1101-2020_01_28_923532 6 11 20742 20742 CD 10_1101-2020_01_28_923532 6 12 USA USA NNP 10_1101-2020_01_28_923532 6 13 ^ ^ NN 10_1101-2020_01_28_923532 6 14 Equally equally RB 10_1101-2020_01_28_923532 6 15 contributing contribute VBG 10_1101-2020_01_28_923532 6 16 first first JJ 10_1101-2020_01_28_923532 6 17 authors author NNS 10_1101-2020_01_28_923532 6 18 * * NFP 10_1101-2020_01_28_923532 6 19 Equally equally RB 10_1101-2020_01_28_923532 6 20 contributing contribute VBG 10_1101-2020_01_28_923532 6 21 corresponding corresponding JJ 10_1101-2020_01_28_923532 6 22 authors author NNS 10_1101-2020_01_28_923532 6 23 Correspondence Correspondence NNP 10_1101-2020_01_28_923532 6 24 should should MD 10_1101-2020_01_28_923532 6 25 be be VB 10_1101-2020_01_28_923532 6 26 addressed address VBN 10_1101-2020_01_28_923532 6 27 to to IN 10_1101-2020_01_28_923532 6 28 alejandro.schaffer@nih.gov alejandro.schaffer@nih.gov NNP 10_1101-2020_01_28_923532 6 29 and and CC 10_1101-2020_01_28_923532 6 30 eytan.ruppin@nih.gov eytan.ruppin@nih.gov NN 10_1101-2020_01_28_923532 6 31 . . . 10_1101-2020_01_28_923532 7 1 Physical physical JJ 10_1101-2020_01_28_923532 7 2 address address NN 10_1101-2020_01_28_923532 7 3 : : : 10_1101-2020_01_28_923532 7 4 Cancer Cancer NNP 10_1101-2020_01_28_923532 7 5 Data Data NNP 10_1101-2020_01_28_923532 7 6 Science Science NNP 10_1101-2020_01_28_923532 7 7 Laboratory Laboratory NNP 10_1101-2020_01_28_923532 7 8 , , , 10_1101-2020_01_28_923532 7 9 National National NNP 10_1101-2020_01_28_923532 7 10 Cancer Cancer NNP 10_1101-2020_01_28_923532 7 11 Institute Institute NNP 10_1101-2020_01_28_923532 7 12 , , , 10_1101-2020_01_28_923532 7 13 Bldg Bldg NNP 10_1101-2020_01_28_923532 7 14 . . . 10_1101-2020_01_28_923532 8 1 15-C1 15-c1 LS 10_1101-2020_01_28_923532 8 2 , , , 10_1101-2020_01_28_923532 8 3 Bethesda Bethesda NNP 10_1101-2020_01_28_923532 8 4 , , , 10_1101-2020_01_28_923532 8 5 MD MD NNP 10_1101-2020_01_28_923532 8 6 20892 20892 CD 10_1101-2020_01_28_923532 8 7 USA USA NNP 10_1101-2020_01_28_923532 8 8 Keywords Keywords NNPS 10_1101-2020_01_28_923532 8 9 : : : 10_1101-2020_01_28_923532 8 10 targeted target VBN 10_1101-2020_01_28_923532 8 11 cancer cancer NN 10_1101-2020_01_28_923532 8 12 therapy therapy NN 10_1101-2020_01_28_923532 8 13 , , , 10_1101-2020_01_28_923532 8 14 combination combination NN 10_1101-2020_01_28_923532 8 15 therapy therapy NN 10_1101-2020_01_28_923532 8 16 , , , 10_1101-2020_01_28_923532 8 17 personalized personalize VBD 10_1101-2020_01_28_923532 8 18 medicine medicine NN 10_1101-2020_01_28_923532 8 19 , , , 10_1101-2020_01_28_923532 8 20 combinatorial combinatorial JJ 10_1101-2020_01_28_923532 8 21 optimization optimization NN 10_1101-2020_01_28_923532 8 22 , , , 10_1101-2020_01_28_923532 8 23 hitting hit VBG 10_1101-2020_01_28_923532 8 24 set set VBN 10_1101-2020_01_28_923532 8 25 , , , 10_1101-2020_01_28_923532 8 26 single single JJ 10_1101-2020_01_28_923532 8 27 - - HYPH 10_1101-2020_01_28_923532 8 28 cell cell NN 10_1101-2020_01_28_923532 8 29 transcriptomics transcriptomic NNS 10_1101-2020_01_28_923532 8 30 105 105 CD 10_1101-2020_01_28_923532 8 31 and and CC 10_1101-2020_01_28_923532 8 32 is be VBZ 10_1101-2020_01_28_923532 8 33 also also RB 10_1101-2020_01_28_923532 8 34 made make VBN 10_1101-2020_01_28_923532 8 35 available available JJ 10_1101-2020_01_28_923532 8 36 for for IN 10_1101-2020_01_28_923532 8 37 use use NN 10_1101-2020_01_28_923532 8 38 under under IN 10_1101-2020_01_28_923532 8 39 a a DT 10_1101-2020_01_28_923532 8 40 CC0 CC0 NNP 10_1101-2020_01_28_923532 8 41 license license NN 10_1101-2020_01_28_923532 8 42 . . . 10_1101-2020_01_28_923532 9 1 ( ( -LRB- 10_1101-2020_01_28_923532 9 2 which which WDT 10_1101-2020_01_28_923532 9 3 was be VBD 10_1101-2020_01_28_923532 9 4 not not RB 10_1101-2020_01_28_923532 9 5 certified certify VBN 10_1101-2020_01_28_923532 9 6 by by IN 10_1101-2020_01_28_923532 9 7 peer peer NN 10_1101-2020_01_28_923532 9 8 review review NN 10_1101-2020_01_28_923532 9 9 ) ) -RRB- 10_1101-2020_01_28_923532 9 10 is be VBZ 10_1101-2020_01_28_923532 9 11 the the DT 10_1101-2020_01_28_923532 9 12 author author NN 10_1101-2020_01_28_923532 9 13 / / SYM 10_1101-2020_01_28_923532 9 14 funder funder NN 10_1101-2020_01_28_923532 9 15 . . . 10_1101-2020_01_28_923532 10 1 This this DT 10_1101-2020_01_28_923532 10 2 article article NN 10_1101-2020_01_28_923532 10 3 is be VBZ 10_1101-2020_01_28_923532 10 4 a a DT 10_1101-2020_01_28_923532 10 5 US US NNP 10_1101-2020_01_28_923532 10 6 Government Government NNP 10_1101-2020_01_28_923532 10 7 work work NN 10_1101-2020_01_28_923532 10 8 . . . 10_1101-2020_01_28_923532 11 1 It -PRON- PRP 10_1101-2020_01_28_923532 11 2 is be VBZ 10_1101-2020_01_28_923532 11 3 not not RB 10_1101-2020_01_28_923532 11 4 subject subject JJ 10_1101-2020_01_28_923532 11 5 to to IN 10_1101-2020_01_28_923532 11 6 copyright copyright NN 10_1101-2020_01_28_923532 11 7 under under IN 10_1101-2020_01_28_923532 11 8 17 17 CD 10_1101-2020_01_28_923532 11 9 USC usc NN 10_1101-2020_01_28_923532 11 10 The the DT 10_1101-2020_01_28_923532 11 11 copyright copyright NN 10_1101-2020_01_28_923532 11 12 holder holder NN 10_1101-2020_01_28_923532 11 13 for for IN 10_1101-2020_01_28_923532 11 14 this this DT 10_1101-2020_01_28_923532 11 15 preprintthis preprintthis NN 10_1101-2020_01_28_923532 11 16 version version NN 10_1101-2020_01_28_923532 11 17 posted post VBD 10_1101-2020_01_28_923532 11 18 February February NNP 10_1101-2020_01_28_923532 11 19 12 12 CD 10_1101-2020_01_28_923532 11 20 , , , 10_1101-2020_01_28_923532 11 21 2021 2021 CD 10_1101-2020_01_28_923532 11 22 . . . 10_1101-2020_01_28_923532 11 23 ; ; : 10_1101-2020_01_28_923532 11 24 https://doi.org/10.1101/2020.01.28.923532doi https://doi.org/10.1101/2020.01.28.923532doi ADD 10_1101-2020_01_28_923532 11 25 : : : 10_1101-2020_01_28_923532 11 26 bioRxiv biorxiv VB 10_1101-2020_01_28_923532 11 27 preprint preprint NN 10_1101-2020_01_28_923532 11 28 mailto:alejandro.schaffer@nih.gov mailto:alejandro.schaffer@nih.gov NNP 10_1101-2020_01_28_923532 11 29 mailto:eytan.ruppin@nih.gov mailto:eytan.ruppin@nih.gov NNP 10_1101-2020_01_28_923532 11 30 https://doi.org/10.1101/2020.01.28.923532 https://doi.org/10.1101/2020.01.28.923532 NNP 10_1101-2020_01_28_923532 11 31 2 2 CD 10_1101-2020_01_28_923532 11 32 Abbreviations Abbreviations NNPS 10_1101-2020_01_28_923532 11 33 : : : 10_1101-2020_01_28_923532 11 34 CTS CTS NNP 10_1101-2020_01_28_923532 11 35 : : : 10_1101-2020_01_28_923532 11 36 cohort cohort NN 10_1101-2020_01_28_923532 11 37 target target NN 10_1101-2020_01_28_923532 11 38 set set VBN 10_1101-2020_01_28_923532 11 39 , , , 10_1101-2020_01_28_923532 11 40 synonym synonym NN 10_1101-2020_01_28_923532 11 41 of of IN 10_1101-2020_01_28_923532 11 42 global global JJ 10_1101-2020_01_28_923532 11 43 hitting hitting NN 10_1101-2020_01_28_923532 11 44 set set VBN 10_1101-2020_01_28_923532 11 45 GEO GEO NNP 10_1101-2020_01_28_923532 11 46 : : : 10_1101-2020_01_28_923532 11 47 Gene Gene NNP 10_1101-2020_01_28_923532 11 48 Expression Expression NNP 10_1101-2020_01_28_923532 11 49 Omnibus Omnibus NNP 10_1101-2020_01_28_923532 11 50 GHS GHS NNP 10_1101-2020_01_28_923532 11 51 : : : 10_1101-2020_01_28_923532 11 52 global global JJ 10_1101-2020_01_28_923532 11 53 hitting hitting NN 10_1101-2020_01_28_923532 11 54 set set NN 10_1101-2020_01_28_923532 11 55 , , , 10_1101-2020_01_28_923532 11 56 synonym synonym NN 10_1101-2020_01_28_923532 11 57 of of IN 10_1101-2020_01_28_923532 11 58 cohort cohort NN 10_1101-2020_01_28_923532 11 59 target target NN 10_1101-2020_01_28_923532 11 60 set set VBN 10_1101-2020_01_28_923532 11 61 GTEx GTEx NNS 10_1101-2020_01_28_923532 11 62 : : : 10_1101-2020_01_28_923532 11 63 Genotype Genotype NNP 10_1101-2020_01_28_923532 11 64 - - HYPH 10_1101-2020_01_28_923532 11 65 Tissue Tissue NNP 10_1101-2020_01_28_923532 11 66 Expression Expression NNP 10_1101-2020_01_28_923532 11 67 ( ( -LRB- 10_1101-2020_01_28_923532 11 68 project project NN 10_1101-2020_01_28_923532 11 69 or or CC 10_1101-2020_01_28_923532 11 70 consortium consortium NN 10_1101-2020_01_28_923532 11 71 ) ) -RRB- 10_1101-2020_01_28_923532 11 72 HPA HPA NNP 10_1101-2020_01_28_923532 11 73 : : : 10_1101-2020_01_28_923532 11 74 Human Human NNP 10_1101-2020_01_28_923532 11 75 Protein Protein NNP 10_1101-2020_01_28_923532 11 76 Atlas Atlas NNP 10_1101-2020_01_28_923532 11 77 HUGO HUGO NNP 10_1101-2020_01_28_923532 11 78 : : : 10_1101-2020_01_28_923532 11 79 Human Human NNP 10_1101-2020_01_28_923532 11 80 Genome Genome NNP 10_1101-2020_01_28_923532 11 81 Organization Organization NNP 10_1101-2020_01_28_923532 11 82 IHS IHS NNP 10_1101-2020_01_28_923532 11 83 : : : 10_1101-2020_01_28_923532 11 84 individual individual JJ 10_1101-2020_01_28_923532 11 85 hitting hitting NN 10_1101-2020_01_28_923532 11 86 set set NN 10_1101-2020_01_28_923532 11 87 , , , 10_1101-2020_01_28_923532 11 88 synonym synonym NN 10_1101-2020_01_28_923532 11 89 of of IN 10_1101-2020_01_28_923532 11 90 individual individual JJ 10_1101-2020_01_28_923532 11 91 target target NN 10_1101-2020_01_28_923532 11 92 set set VBN 10_1101-2020_01_28_923532 11 93 ILP ILP NNP 10_1101-2020_01_28_923532 11 94 : : : 10_1101-2020_01_28_923532 11 95 integer integer NN 10_1101-2020_01_28_923532 11 96 linear linear NNP 10_1101-2020_01_28_923532 11 97 programming programming NN 10_1101-2020_01_28_923532 11 98 ITS its PRP$ 10_1101-2020_01_28_923532 11 99 : : : 10_1101-2020_01_28_923532 11 100 individual individual JJ 10_1101-2020_01_28_923532 11 101 target target NN 10_1101-2020_01_28_923532 11 102 set set VBN 10_1101-2020_01_28_923532 11 103 lb lb RB 10_1101-2020_01_28_923532 11 104 : : : 10_1101-2020_01_28_923532 11 105 lower lower RBR 10_1101-2020_01_28_923532 11 106 bound bind VBN 10_1101-2020_01_28_923532 11 107 on on IN 10_1101-2020_01_28_923532 11 108 fraction fraction NN 10_1101-2020_01_28_923532 11 109 of of IN 10_1101-2020_01_28_923532 11 110 tumor tumor NN 10_1101-2020_01_28_923532 11 111 cells cell NNS 10_1101-2020_01_28_923532 11 112 killed kill VBD 10_1101-2020_01_28_923532 11 113 RME RME NNP 10_1101-2020_01_28_923532 11 114 : : : 10_1101-2020_01_28_923532 11 115 receptor receptor NN 10_1101-2020_01_28_923532 11 116 - - HYPH 10_1101-2020_01_28_923532 11 117 mediated mediate VBN 10_1101-2020_01_28_923532 11 118 endocytosis endocytosis NN 10_1101-2020_01_28_923532 11 119 TPM TPM NNP 10_1101-2020_01_28_923532 11 120 : : : 10_1101-2020_01_28_923532 11 121 transcripts transcript NNS 10_1101-2020_01_28_923532 11 122 per per IN 10_1101-2020_01_28_923532 11 123 million million CD 10_1101-2020_01_28_923532 11 124 ub ub IN 10_1101-2020_01_28_923532 11 125 : : : 10_1101-2020_01_28_923532 11 126 upper upper NNP 10_1101-2020_01_28_923532 11 127 bound bind VBN 10_1101-2020_01_28_923532 11 128 on on IN 10_1101-2020_01_28_923532 11 129 fraction fraction NN 10_1101-2020_01_28_923532 11 130 of of IN 10_1101-2020_01_28_923532 11 131 non non JJ 10_1101-2020_01_28_923532 11 132 - - JJ 10_1101-2020_01_28_923532 11 133 tumor tumor JJ 10_1101-2020_01_28_923532 11 134 cells cell NNS 10_1101-2020_01_28_923532 11 135 killed kill VBD 10_1101-2020_01_28_923532 11 136 105 105 CD 10_1101-2020_01_28_923532 11 137 and and CC 10_1101-2020_01_28_923532 11 138 is be VBZ 10_1101-2020_01_28_923532 11 139 also also RB 10_1101-2020_01_28_923532 11 140 made make VBN 10_1101-2020_01_28_923532 11 141 available available JJ 10_1101-2020_01_28_923532 11 142 for for IN 10_1101-2020_01_28_923532 11 143 use use NN 10_1101-2020_01_28_923532 11 144 under under IN 10_1101-2020_01_28_923532 11 145 a a DT 10_1101-2020_01_28_923532 11 146 CC0 CC0 NNP 10_1101-2020_01_28_923532 11 147 license license NN 10_1101-2020_01_28_923532 11 148 . . . 10_1101-2020_01_28_923532 12 1 ( ( -LRB- 10_1101-2020_01_28_923532 12 2 which which WDT 10_1101-2020_01_28_923532 12 3 was be VBD 10_1101-2020_01_28_923532 12 4 not not RB 10_1101-2020_01_28_923532 12 5 certified certify VBN 10_1101-2020_01_28_923532 12 6 by by IN 10_1101-2020_01_28_923532 12 7 peer peer NN 10_1101-2020_01_28_923532 12 8 review review NN 10_1101-2020_01_28_923532 12 9 ) ) -RRB- 10_1101-2020_01_28_923532 12 10 is be VBZ 10_1101-2020_01_28_923532 12 11 the the DT 10_1101-2020_01_28_923532 12 12 author author NN 10_1101-2020_01_28_923532 12 13 / / SYM 10_1101-2020_01_28_923532 12 14 funder funder NN 10_1101-2020_01_28_923532 12 15 . . . 10_1101-2020_01_28_923532 13 1 This this DT 10_1101-2020_01_28_923532 13 2 article article NN 10_1101-2020_01_28_923532 13 3 is be VBZ 10_1101-2020_01_28_923532 13 4 a a DT 10_1101-2020_01_28_923532 13 5 US US NNP 10_1101-2020_01_28_923532 13 6 Government Government NNP 10_1101-2020_01_28_923532 13 7 work work NN 10_1101-2020_01_28_923532 13 8 . . . 10_1101-2020_01_28_923532 14 1 It -PRON- PRP 10_1101-2020_01_28_923532 14 2 is be VBZ 10_1101-2020_01_28_923532 14 3 not not RB 10_1101-2020_01_28_923532 14 4 subject subject JJ 10_1101-2020_01_28_923532 14 5 to to IN 10_1101-2020_01_28_923532 14 6 copyright copyright NN 10_1101-2020_01_28_923532 14 7 under under IN 10_1101-2020_01_28_923532 14 8 17 17 CD 10_1101-2020_01_28_923532 14 9 USC usc NN 10_1101-2020_01_28_923532 14 10 The the DT 10_1101-2020_01_28_923532 14 11 copyright copyright NN 10_1101-2020_01_28_923532 14 12 holder holder NN 10_1101-2020_01_28_923532 14 13 for for IN 10_1101-2020_01_28_923532 14 14 this this DT 10_1101-2020_01_28_923532 14 15 preprintthis preprintthis NN 10_1101-2020_01_28_923532 14 16 version version NN 10_1101-2020_01_28_923532 14 17 posted post VBD 10_1101-2020_01_28_923532 14 18 February February NNP 10_1101-2020_01_28_923532 14 19 12 12 CD 10_1101-2020_01_28_923532 14 20 , , , 10_1101-2020_01_28_923532 14 21 2021 2021 CD 10_1101-2020_01_28_923532 14 22 . . . 10_1101-2020_01_28_923532 14 23 ; ; : 10_1101-2020_01_28_923532 14 24 https://doi.org/10.1101/2020.01.28.923532doi https://doi.org/10.1101/2020.01.28.923532doi ADD 10_1101-2020_01_28_923532 14 25 : : : 10_1101-2020_01_28_923532 14 26 bioRxiv biorxiv VB 10_1101-2020_01_28_923532 14 27 preprint preprint NN 10_1101-2020_01_28_923532 14 28 https://doi.org/10.1101/2020.01.28.923532 https://doi.org/10.1101/2020.01.28.923532 UH 10_1101-2020_01_28_923532 14 29 3 3 CD 10_1101-2020_01_28_923532 14 30 Abstract Abstract NNP 10_1101-2020_01_28_923532 14 31 The the DT 10_1101-2020_01_28_923532 14 32 availability availability NN 10_1101-2020_01_28_923532 14 33 of of IN 10_1101-2020_01_28_923532 14 34 single single JJ 10_1101-2020_01_28_923532 14 35 - - HYPH 10_1101-2020_01_28_923532 14 36 cell cell NN 10_1101-2020_01_28_923532 14 37 transcriptomics transcriptomic NNS 10_1101-2020_01_28_923532 14 38 data datum NNS 10_1101-2020_01_28_923532 14 39 opens open VBZ 10_1101-2020_01_28_923532 14 40 new new JJ 10_1101-2020_01_28_923532 14 41 opportunities opportunity NNS 10_1101-2020_01_28_923532 14 42 for for IN 10_1101-2020_01_28_923532 14 43 rational rational JJ 10_1101-2020_01_28_923532 14 44 design design NN 10_1101-2020_01_28_923532 14 45 of of IN 10_1101-2020_01_28_923532 14 46 combination combination NN 10_1101-2020_01_28_923532 14 47 cancer cancer NN 10_1101-2020_01_28_923532 14 48 treatments treatment NNS 10_1101-2020_01_28_923532 14 49 in in IN 10_1101-2020_01_28_923532 14 50 a a DT 10_1101-2020_01_28_923532 14 51 systematic systematic JJ 10_1101-2020_01_28_923532 14 52 manner manner NN 10_1101-2020_01_28_923532 14 53 . . . 10_1101-2020_01_28_923532 15 1 Mining mine VBG 10_1101-2020_01_28_923532 15 2 such such JJ 10_1101-2020_01_28_923532 15 3 data datum NNS 10_1101-2020_01_28_923532 15 4 , , , 10_1101-2020_01_28_923532 15 5 we -PRON- PRP 10_1101-2020_01_28_923532 15 6 employed employ VBD 10_1101-2020_01_28_923532 15 7 combinatorial combinatorial JJ 10_1101-2020_01_28_923532 15 8 optimization optimization NN 10_1101-2020_01_28_923532 15 9 techniques technique NNS 10_1101-2020_01_28_923532 15 10 to to TO 10_1101-2020_01_28_923532 15 11 explore explore VB 10_1101-2020_01_28_923532 15 12 the the DT 10_1101-2020_01_28_923532 15 13 landscape landscape NN 10_1101-2020_01_28_923532 15 14 of of IN 10_1101-2020_01_28_923532 15 15 optimal optimal JJ 10_1101-2020_01_28_923532 15 16 combination combination NN 10_1101-2020_01_28_923532 15 17 therapies therapy NNS 10_1101-2020_01_28_923532 15 18 in in IN 10_1101-2020_01_28_923532 15 19 solid solid JJ 10_1101-2020_01_28_923532 15 20 tumors tumor NNS 10_1101-2020_01_28_923532 15 21 , , , 10_1101-2020_01_28_923532 15 22 including include VBG 10_1101-2020_01_28_923532 15 23 brain brain NN 10_1101-2020_01_28_923532 15 24 , , , 10_1101-2020_01_28_923532 15 25 head head NN 10_1101-2020_01_28_923532 15 26 and and CC 10_1101-2020_01_28_923532 15 27 neck neck NN 10_1101-2020_01_28_923532 15 28 , , , 10_1101-2020_01_28_923532 15 29 melanoma melanoma NNP 10_1101-2020_01_28_923532 15 30 , , , 10_1101-2020_01_28_923532 15 31 lung lung NN 10_1101-2020_01_28_923532 15 32 , , , 10_1101-2020_01_28_923532 15 33 breast breast NN 10_1101-2020_01_28_923532 15 34 and and CC 10_1101-2020_01_28_923532 15 35 colon colon NN 10_1101-2020_01_28_923532 15 36 cancers cancer NNS 10_1101-2020_01_28_923532 15 37 . . . 10_1101-2020_01_28_923532 16 1 We -PRON- PRP 10_1101-2020_01_28_923532 16 2 assume assume VBP 10_1101-2020_01_28_923532 16 3 that that IN 10_1101-2020_01_28_923532 16 4 each each DT 10_1101-2020_01_28_923532 16 5 individual individual JJ 10_1101-2020_01_28_923532 16 6 therapy therapy NN 10_1101-2020_01_28_923532 16 7 can can MD 10_1101-2020_01_28_923532 16 8 target target VB 10_1101-2020_01_28_923532 16 9 any any DT 10_1101-2020_01_28_923532 16 10 one one CD 10_1101-2020_01_28_923532 16 11 of of IN 10_1101-2020_01_28_923532 16 12 1269 1269 CD 10_1101-2020_01_28_923532 16 13 genes gene NNS 10_1101-2020_01_28_923532 16 14 encoding encode VBG 10_1101-2020_01_28_923532 16 15 cell cell NN 10_1101-2020_01_28_923532 16 16 surface surface NN 10_1101-2020_01_28_923532 16 17 receptors receptor NNS 10_1101-2020_01_28_923532 16 18 , , , 10_1101-2020_01_28_923532 16 19 which which WDT 10_1101-2020_01_28_923532 16 20 may may MD 10_1101-2020_01_28_923532 16 21 be be VB 10_1101-2020_01_28_923532 16 22 targets target NNS 10_1101-2020_01_28_923532 16 23 of of IN 10_1101-2020_01_28_923532 16 24 CAR CAR NNP 10_1101-2020_01_28_923532 16 25 - - HYPH 10_1101-2020_01_28_923532 16 26 T T NNP 10_1101-2020_01_28_923532 16 27 , , , 10_1101-2020_01_28_923532 16 28 conjugated conjugate VBD 10_1101-2020_01_28_923532 16 29 antibodies antibody NNS 10_1101-2020_01_28_923532 16 30 or or CC 10_1101-2020_01_28_923532 16 31 coated coat VBN 10_1101-2020_01_28_923532 16 32 nanoparticle nanoparticle NN 10_1101-2020_01_28_923532 16 33 therapies therapy NNS 10_1101-2020_01_28_923532 16 34 . . . 10_1101-2020_01_28_923532 17 1 In in IN 10_1101-2020_01_28_923532 17 2 most most JJS 10_1101-2020_01_28_923532 17 3 cancer cancer NN 10_1101-2020_01_28_923532 17 4 types type NNS 10_1101-2020_01_28_923532 17 5 , , , 10_1101-2020_01_28_923532 17 6 personalized personalize VBN 10_1101-2020_01_28_923532 17 7 combinations combination NNS 10_1101-2020_01_28_923532 17 8 composed compose VBN 10_1101-2020_01_28_923532 17 9 of of IN 10_1101-2020_01_28_923532 17 10 at at IN 10_1101-2020_01_28_923532 17 11 most most RBS 10_1101-2020_01_28_923532 17 12 four four CD 10_1101-2020_01_28_923532 17 13 targets target NNS 10_1101-2020_01_28_923532 17 14 are be VBP 10_1101-2020_01_28_923532 17 15 sufficient sufficient JJ 10_1101-2020_01_28_923532 17 16 to to TO 10_1101-2020_01_28_923532 17 17 kill kill VB 10_1101-2020_01_28_923532 17 18 at at RB 10_1101-2020_01_28_923532 17 19 least least RBS 10_1101-2020_01_28_923532 17 20 80 80 CD 10_1101-2020_01_28_923532 17 21 % % NN 10_1101-2020_01_28_923532 17 22 of of IN 10_1101-2020_01_28_923532 17 23 the the DT 10_1101-2020_01_28_923532 17 24 tumor tumor NN 10_1101-2020_01_28_923532 17 25 cells cell NNS 10_1101-2020_01_28_923532 17 26 while while IN 10_1101-2020_01_28_923532 17 27 killing kill VBG 10_1101-2020_01_28_923532 17 28 at at IN 10_1101-2020_01_28_923532 17 29 most most RBS 10_1101-2020_01_28_923532 17 30 10 10 CD 10_1101-2020_01_28_923532 17 31 % % NN 10_1101-2020_01_28_923532 17 32 of of IN 10_1101-2020_01_28_923532 17 33 the the DT 10_1101-2020_01_28_923532 17 34 non non JJ 10_1101-2020_01_28_923532 17 35 - - JJ 10_1101-2020_01_28_923532 17 36 tumor tumor JJ 10_1101-2020_01_28_923532 17 37 cells cell NNS 10_1101-2020_01_28_923532 17 38 in in IN 10_1101-2020_01_28_923532 17 39 each each DT 10_1101-2020_01_28_923532 17 40 patient patient NN 10_1101-2020_01_28_923532 17 41 . . . 10_1101-2020_01_28_923532 18 1 The the DT 10_1101-2020_01_28_923532 18 2 number number NN 10_1101-2020_01_28_923532 18 3 of of IN 10_1101-2020_01_28_923532 18 4 distinct distinct JJ 10_1101-2020_01_28_923532 18 5 targets target NNS 10_1101-2020_01_28_923532 18 6 needed need VBN 10_1101-2020_01_28_923532 18 7 to to TO 10_1101-2020_01_28_923532 18 8 do do VB 10_1101-2020_01_28_923532 18 9 that that DT 10_1101-2020_01_28_923532 18 10 for for IN 10_1101-2020_01_28_923532 18 11 all all DT 10_1101-2020_01_28_923532 18 12 patients patient NNS 10_1101-2020_01_28_923532 18 13 in in IN 10_1101-2020_01_28_923532 18 14 8 8 CD 10_1101-2020_01_28_923532 18 15 of of IN 10_1101-2020_01_28_923532 18 16 the the DT 10_1101-2020_01_28_923532 18 17 9 9 CD 10_1101-2020_01_28_923532 18 18 cohorts cohort NNS 10_1101-2020_01_28_923532 18 19 we -PRON- PRP 10_1101-2020_01_28_923532 18 20 studied study VBD 10_1101-2020_01_28_923532 18 21 is be VBZ 10_1101-2020_01_28_923532 18 22 at at IN 10_1101-2020_01_28_923532 18 23 most most JJS 10_1101-2020_01_28_923532 18 24 11 11 CD 10_1101-2020_01_28_923532 18 25 , , , 10_1101-2020_01_28_923532 18 26 while while IN 10_1101-2020_01_28_923532 18 27 one one CD 10_1101-2020_01_28_923532 18 28 larger large JJR 10_1101-2020_01_28_923532 18 29 melanoma melanoma NN 10_1101-2020_01_28_923532 18 30 cohort cohort NN 10_1101-2020_01_28_923532 18 31 requires require VBZ 10_1101-2020_01_28_923532 18 32 over over IN 10_1101-2020_01_28_923532 18 33 30 30 CD 10_1101-2020_01_28_923532 18 34 distinct distinct JJ 10_1101-2020_01_28_923532 18 35 targets target NNS 10_1101-2020_01_28_923532 18 36 . . . 10_1101-2020_01_28_923532 19 1 Further further RB 10_1101-2020_01_28_923532 19 2 requiring require VBG 10_1101-2020_01_28_923532 19 3 that that IN 10_1101-2020_01_28_923532 19 4 the the DT 10_1101-2020_01_28_923532 19 5 target target NN 10_1101-2020_01_28_923532 19 6 genes gene NNS 10_1101-2020_01_28_923532 19 7 be be VB 10_1101-2020_01_28_923532 19 8 lowly lowly RB 10_1101-2020_01_28_923532 19 9 expressed express VBN 10_1101-2020_01_28_923532 19 10 across across IN 10_1101-2020_01_28_923532 19 11 many many JJ 10_1101-2020_01_28_923532 19 12 different different JJ 10_1101-2020_01_28_923532 19 13 healthy healthy JJ 10_1101-2020_01_28_923532 19 14 tissues tissue NNS 10_1101-2020_01_28_923532 19 15 uncovers uncover NNS 10_1101-2020_01_28_923532 19 16 qualitatively qualitatively RB 10_1101-2020_01_28_923532 19 17 similar similar JJ 10_1101-2020_01_28_923532 19 18 trends trend NNS 10_1101-2020_01_28_923532 19 19 . . . 10_1101-2020_01_28_923532 20 1 However however RB 10_1101-2020_01_28_923532 20 2 , , , 10_1101-2020_01_28_923532 20 3 as as IN 10_1101-2020_01_28_923532 20 4 one one CD 10_1101-2020_01_28_923532 20 5 requires require VBZ 10_1101-2020_01_28_923532 20 6 either either CC 10_1101-2020_01_28_923532 20 7 more more RBR 10_1101-2020_01_28_923532 20 8 stringent stringent JJ 10_1101-2020_01_28_923532 20 9 killing kill VBG 10_1101-2020_01_28_923532 20 10 thresholds threshold NNS 10_1101-2020_01_28_923532 20 11 or or CC 10_1101-2020_01_28_923532 20 12 more more RBR 10_1101-2020_01_28_923532 20 13 stringent stringent JJ 10_1101-2020_01_28_923532 20 14 sparing sparing NN 10_1101-2020_01_28_923532 20 15 of of IN 10_1101-2020_01_28_923532 20 16 non non JJ 10_1101-2020_01_28_923532 20 17 - - JJ 10_1101-2020_01_28_923532 20 18 cancerous cancerous JJ 10_1101-2020_01_28_923532 20 19 tissues tissue NNS 10_1101-2020_01_28_923532 20 20 beyond beyond IN 10_1101-2020_01_28_923532 20 21 these these DT 10_1101-2020_01_28_923532 20 22 baseline baseline JJ 10_1101-2020_01_28_923532 20 23 values value NNS 10_1101-2020_01_28_923532 20 24 , , , 10_1101-2020_01_28_923532 20 25 the the DT 10_1101-2020_01_28_923532 20 26 number number NN 10_1101-2020_01_28_923532 20 27 of of IN 10_1101-2020_01_28_923532 20 28 targets target NNS 10_1101-2020_01_28_923532 20 29 needed need VBN 10_1101-2020_01_28_923532 20 30 rises rise VBZ 10_1101-2020_01_28_923532 20 31 rapidly rapidly RB 10_1101-2020_01_28_923532 20 32 . . . 10_1101-2020_01_28_923532 21 1 Emerging emerge VBG 10_1101-2020_01_28_923532 21 2 promising promise VBG 10_1101-2020_01_28_923532 21 3 targets target NNS 10_1101-2020_01_28_923532 21 4 include include VBP 10_1101-2020_01_28_923532 21 5 the the DT 10_1101-2020_01_28_923532 21 6 gene gene NN 10_1101-2020_01_28_923532 21 7 PTPRZ1 ptprz1 NN 10_1101-2020_01_28_923532 21 8 , , , 10_1101-2020_01_28_923532 21 9 which which WDT 10_1101-2020_01_28_923532 21 10 is be VBZ 10_1101-2020_01_28_923532 21 11 frequently frequently RB 10_1101-2020_01_28_923532 21 12 found find VBN 10_1101-2020_01_28_923532 21 13 in in IN 10_1101-2020_01_28_923532 21 14 the the DT 10_1101-2020_01_28_923532 21 15 optimal optimal JJ 10_1101-2020_01_28_923532 21 16 combinations combination NNS 10_1101-2020_01_28_923532 21 17 for for IN 10_1101-2020_01_28_923532 21 18 brain brain NN 10_1101-2020_01_28_923532 21 19 and and CC 10_1101-2020_01_28_923532 21 20 head head NN 10_1101-2020_01_28_923532 21 21 and and CC 10_1101-2020_01_28_923532 21 22 neck neck NN 10_1101-2020_01_28_923532 21 23 cancers cancer NNS 10_1101-2020_01_28_923532 21 24 , , , 10_1101-2020_01_28_923532 21 25 and and CC 10_1101-2020_01_28_923532 21 26 EGFR EGFR NNP 10_1101-2020_01_28_923532 21 27 , , , 10_1101-2020_01_28_923532 21 28 a a DT 10_1101-2020_01_28_923532 21 29 recurring recur VBG 10_1101-2020_01_28_923532 21 30 target target NN 10_1101-2020_01_28_923532 21 31 in in IN 10_1101-2020_01_28_923532 21 32 multiple multiple JJ 10_1101-2020_01_28_923532 21 33 tumor tumor NN 10_1101-2020_01_28_923532 21 34 types type NNS 10_1101-2020_01_28_923532 21 35 . . . 10_1101-2020_01_28_923532 22 1 In in IN 10_1101-2020_01_28_923532 22 2 sum sum NN 10_1101-2020_01_28_923532 22 3 , , , 10_1101-2020_01_28_923532 22 4 this this DT 10_1101-2020_01_28_923532 22 5 is be VBZ 10_1101-2020_01_28_923532 22 6 the the DT 10_1101-2020_01_28_923532 22 7 first first JJ 10_1101-2020_01_28_923532 22 8 systematic systematic JJ 10_1101-2020_01_28_923532 22 9 single single JJ 10_1101-2020_01_28_923532 22 10 - - HYPH 10_1101-2020_01_28_923532 22 11 cell cell NN 10_1101-2020_01_28_923532 22 12 based base VBN 10_1101-2020_01_28_923532 22 13 characterization characterization NN 10_1101-2020_01_28_923532 22 14 of of IN 10_1101-2020_01_28_923532 22 15 the the DT 10_1101-2020_01_28_923532 22 16 landscape landscape NN 10_1101-2020_01_28_923532 22 17 of of IN 10_1101-2020_01_28_923532 22 18 combinatorial combinatorial JJ 10_1101-2020_01_28_923532 22 19 receptor receptor NN 10_1101-2020_01_28_923532 22 20 - - HYPH 10_1101-2020_01_28_923532 22 21 mediated mediate VBN 10_1101-2020_01_28_923532 22 22 cancer cancer NN 10_1101-2020_01_28_923532 22 23 treatments treatment NNS 10_1101-2020_01_28_923532 22 24 , , , 10_1101-2020_01_28_923532 22 25 identifying identify VBG 10_1101-2020_01_28_923532 22 26 promising promise VBG 10_1101-2020_01_28_923532 22 27 targets target NNS 10_1101-2020_01_28_923532 22 28 for for IN 10_1101-2020_01_28_923532 22 29 future future JJ 10_1101-2020_01_28_923532 22 30 development development NN 10_1101-2020_01_28_923532 22 31 . . . 10_1101-2020_01_28_923532 23 1 105 105 CD 10_1101-2020_01_28_923532 23 2 and and CC 10_1101-2020_01_28_923532 23 3 is be VBZ 10_1101-2020_01_28_923532 23 4 also also RB 10_1101-2020_01_28_923532 23 5 made make VBN 10_1101-2020_01_28_923532 23 6 available available JJ 10_1101-2020_01_28_923532 23 7 for for IN 10_1101-2020_01_28_923532 23 8 use use NN 10_1101-2020_01_28_923532 23 9 under under IN 10_1101-2020_01_28_923532 23 10 a a DT 10_1101-2020_01_28_923532 23 11 CC0 CC0 NNP 10_1101-2020_01_28_923532 23 12 license license NN 10_1101-2020_01_28_923532 23 13 . . . 10_1101-2020_01_28_923532 24 1 ( ( -LRB- 10_1101-2020_01_28_923532 24 2 which which WDT 10_1101-2020_01_28_923532 24 3 was be VBD 10_1101-2020_01_28_923532 24 4 not not RB 10_1101-2020_01_28_923532 24 5 certified certify VBN 10_1101-2020_01_28_923532 24 6 by by IN 10_1101-2020_01_28_923532 24 7 peer peer NN 10_1101-2020_01_28_923532 24 8 review review NN 10_1101-2020_01_28_923532 24 9 ) ) -RRB- 10_1101-2020_01_28_923532 24 10 is be VBZ 10_1101-2020_01_28_923532 24 11 the the DT 10_1101-2020_01_28_923532 24 12 author author NN 10_1101-2020_01_28_923532 24 13 / / SYM 10_1101-2020_01_28_923532 24 14 funder funder NN 10_1101-2020_01_28_923532 24 15 . . . 10_1101-2020_01_28_923532 25 1 This this DT 10_1101-2020_01_28_923532 25 2 article article NN 10_1101-2020_01_28_923532 25 3 is be VBZ 10_1101-2020_01_28_923532 25 4 a a DT 10_1101-2020_01_28_923532 25 5 US US NNP 10_1101-2020_01_28_923532 25 6 Government Government NNP 10_1101-2020_01_28_923532 25 7 work work NN 10_1101-2020_01_28_923532 25 8 . . . 10_1101-2020_01_28_923532 26 1 It -PRON- PRP 10_1101-2020_01_28_923532 26 2 is be VBZ 10_1101-2020_01_28_923532 26 3 not not RB 10_1101-2020_01_28_923532 26 4 subject subject JJ 10_1101-2020_01_28_923532 26 5 to to IN 10_1101-2020_01_28_923532 26 6 copyright copyright NN 10_1101-2020_01_28_923532 26 7 under under IN 10_1101-2020_01_28_923532 26 8 17 17 CD 10_1101-2020_01_28_923532 26 9 USC usc NN 10_1101-2020_01_28_923532 26 10 The the DT 10_1101-2020_01_28_923532 26 11 copyright copyright NN 10_1101-2020_01_28_923532 26 12 holder holder NN 10_1101-2020_01_28_923532 26 13 for for IN 10_1101-2020_01_28_923532 26 14 this this DT 10_1101-2020_01_28_923532 26 15 preprintthis preprintthis NN 10_1101-2020_01_28_923532 26 16 version version NN 10_1101-2020_01_28_923532 26 17 posted post VBD 10_1101-2020_01_28_923532 26 18 February February NNP 10_1101-2020_01_28_923532 26 19 12 12 CD 10_1101-2020_01_28_923532 26 20 , , , 10_1101-2020_01_28_923532 26 21 2021 2021 CD 10_1101-2020_01_28_923532 26 22 . . . 10_1101-2020_01_28_923532 26 23 ; ; : 10_1101-2020_01_28_923532 26 24 https://doi.org/10.1101/2020.01.28.923532doi https://doi.org/10.1101/2020.01.28.923532doi ADD 10_1101-2020_01_28_923532 26 25 : : : 10_1101-2020_01_28_923532 26 26 bioRxiv biorxiv VB 10_1101-2020_01_28_923532 26 27 preprint preprint NN 10_1101-2020_01_28_923532 26 28 https://doi.org/10.1101/2020.01.28.923532 https://doi.org/10.1101/2020.01.28.923532 UH 10_1101-2020_01_28_923532 26 29 4 4 CD 10_1101-2020_01_28_923532 26 30 Introduction Introduction NNP 10_1101-2020_01_28_923532 26 31 Personalized Personalized NNP 10_1101-2020_01_28_923532 26 32 oncology oncology NN 10_1101-2020_01_28_923532 26 33 offers offer VBZ 10_1101-2020_01_28_923532 26 34 hope hope NN 10_1101-2020_01_28_923532 26 35 that that IN 10_1101-2020_01_28_923532 26 36 each each DT 10_1101-2020_01_28_923532 26 37 patient patient NN 10_1101-2020_01_28_923532 26 38 's 's POS 10_1101-2020_01_28_923532 26 39 cancer cancer NN 10_1101-2020_01_28_923532 26 40 can can MD 10_1101-2020_01_28_923532 26 41 be be VB 10_1101-2020_01_28_923532 26 42 treated treat VBN 10_1101-2020_01_28_923532 26 43 based base VBN 10_1101-2020_01_28_923532 26 44 on on IN 10_1101-2020_01_28_923532 26 45 its -PRON- PRP$ 10_1101-2020_01_28_923532 26 46 genomic genomic JJ 10_1101-2020_01_28_923532 26 47 characteristics1,2 characteristics1,2 NN 10_1101-2020_01_28_923532 26 48 . . . 10_1101-2020_01_28_923532 27 1 Several several JJ 10_1101-2020_01_28_923532 27 2 trials trial NNS 10_1101-2020_01_28_923532 27 3 have have VBP 10_1101-2020_01_28_923532 27 4 suggested suggest VBN 10_1101-2020_01_28_923532 27 5 that that IN 10_1101-2020_01_28_923532 27 6 it -PRON- PRP 10_1101-2020_01_28_923532 27 7 is be VBZ 10_1101-2020_01_28_923532 27 8 possible possible JJ 10_1101-2020_01_28_923532 27 9 to to TO 10_1101-2020_01_28_923532 27 10 collect collect VB 10_1101-2020_01_28_923532 27 11 genomics genomic NNS 10_1101-2020_01_28_923532 27 12 data datum NNS 10_1101-2020_01_28_923532 27 13 fast fast RB 10_1101-2020_01_28_923532 27 14 enough enough RB 10_1101-2020_01_28_923532 27 15 to to TO 10_1101-2020_01_28_923532 27 16 inform inform VB 10_1101-2020_01_28_923532 27 17 treatment treatment NN 10_1101-2020_01_28_923532 27 18 decisions3 decisions3 NN 10_1101-2020_01_28_923532 27 19 - - HYPH 10_1101-2020_01_28_923532 27 20 5 5 CD 10_1101-2020_01_28_923532 27 21 . . . 10_1101-2020_01_28_923532 28 1 Meta meta JJ 10_1101-2020_01_28_923532 28 2 - - HYPH 10_1101-2020_01_28_923532 28 3 analysis analysis NN 10_1101-2020_01_28_923532 28 4 of of IN 10_1101-2020_01_28_923532 28 5 Phase Phase NNP 10_1101-2020_01_28_923532 28 6 I -PRON- PRP 10_1101-2020_01_28_923532 28 7 clinical clinical JJ 10_1101-2020_01_28_923532 28 8 trials trial NNS 10_1101-2020_01_28_923532 28 9 completed complete VBN 10_1101-2020_01_28_923532 28 10 during during IN 10_1101-2020_01_28_923532 28 11 2011 2011 CD 10_1101-2020_01_28_923532 28 12 - - SYM 10_1101-2020_01_28_923532 28 13 2013 2013 CD 10_1101-2020_01_28_923532 28 14 showed show VBD 10_1101-2020_01_28_923532 28 15 that that IN 10_1101-2020_01_28_923532 28 16 overall overall RB 10_1101-2020_01_28_923532 28 17 , , , 10_1101-2020_01_28_923532 28 18 trials trial NNS 10_1101-2020_01_28_923532 28 19 that that WDT 10_1101-2020_01_28_923532 28 20 used use VBD 10_1101-2020_01_28_923532 28 21 molecular molecular JJ 10_1101-2020_01_28_923532 28 22 biomarker biomarker NN 10_1101-2020_01_28_923532 28 23 information information NN 10_1101-2020_01_28_923532 28 24 to to TO 10_1101-2020_01_28_923532 28 25 influence influence VB 10_1101-2020_01_28_923532 28 26 treatment treatment NN 10_1101-2020_01_28_923532 28 27 plans plan NNS 10_1101-2020_01_28_923532 28 28 gave give VBD 10_1101-2020_01_28_923532 28 29 better well JJR 10_1101-2020_01_28_923532 28 30 results result NNS 10_1101-2020_01_28_923532 28 31 than than IN 10_1101-2020_01_28_923532 28 32 trials trial NNS 10_1101-2020_01_28_923532 28 33 that that WDT 10_1101-2020_01_28_923532 28 34 did do VBD 10_1101-2020_01_28_923532 28 35 not6 not6 RB 10_1101-2020_01_28_923532 28 36 . . . 10_1101-2020_01_28_923532 29 1 However however RB 10_1101-2020_01_28_923532 29 2 , , , 10_1101-2020_01_28_923532 29 3 most most JJS 10_1101-2020_01_28_923532 29 4 precision precision NN 10_1101-2020_01_28_923532 29 5 oncology oncology NN 10_1101-2020_01_28_923532 29 6 treatments treatment NNS 10_1101-2020_01_28_923532 29 7 utilize utilize VBP 10_1101-2020_01_28_923532 29 8 only only RB 10_1101-2020_01_28_923532 29 9 one one CD 10_1101-2020_01_28_923532 29 10 or or CC 10_1101-2020_01_28_923532 29 11 two two CD 10_1101-2020_01_28_923532 29 12 medicines medicine NNS 10_1101-2020_01_28_923532 29 13 , , , 10_1101-2020_01_28_923532 29 14 and and CC 10_1101-2020_01_28_923532 29 15 resistant resistant JJ 10_1101-2020_01_28_923532 29 16 clones clone NNS 10_1101-2020_01_28_923532 29 17 frequently frequently RB 10_1101-2020_01_28_923532 29 18 emerge emerge VBP 10_1101-2020_01_28_923532 29 19 , , , 10_1101-2020_01_28_923532 29 20 emphasizing emphasize VBG 10_1101-2020_01_28_923532 29 21 the the DT 10_1101-2020_01_28_923532 29 22 need need NN 10_1101-2020_01_28_923532 29 23 to to TO 10_1101-2020_01_28_923532 29 24 deliver deliver VB 10_1101-2020_01_28_923532 29 25 personalized personalized JJ 10_1101-2020_01_28_923532 29 26 medicine medicine NN 10_1101-2020_01_28_923532 29 27 as as IN 10_1101-2020_01_28_923532 29 28 multiple multiple JJ 10_1101-2020_01_28_923532 29 29 agents agent NNS 10_1101-2020_01_28_923532 29 30 combined6 combined6 NN 10_1101-2020_01_28_923532 29 31 - - HYPH 10_1101-2020_01_28_923532 29 32 11 11 CD 10_1101-2020_01_28_923532 29 33 . . . 10_1101-2020_01_28_923532 30 1 Important important JJ 10_1101-2020_01_28_923532 30 2 opportunities opportunity NNS 10_1101-2020_01_28_923532 30 3 to to TO 10_1101-2020_01_28_923532 30 4 combine combine VB 10_1101-2020_01_28_923532 30 5 systems system NNS 10_1101-2020_01_28_923532 30 6 biology biology NN 10_1101-2020_01_28_923532 30 7 and and CC 10_1101-2020_01_28_923532 30 8 design design NN 10_1101-2020_01_28_923532 30 9 of of IN 10_1101-2020_01_28_923532 30 10 nanomaterials nanomaterial NNS 10_1101-2020_01_28_923532 30 11 have have VBP 10_1101-2020_01_28_923532 30 12 been be VBN 10_1101-2020_01_28_923532 30 13 recognized recognize VBN 10_1101-2020_01_28_923532 30 14 to to TO 10_1101-2020_01_28_923532 30 15 deliver deliver VB 10_1101-2020_01_28_923532 30 16 medicines medicine NNS 10_1101-2020_01_28_923532 30 17 in in IN 10_1101-2020_01_28_923532 30 18 combination combination NN 10_1101-2020_01_28_923532 30 19 to to TO 10_1101-2020_01_28_923532 30 20 overcome overcome VB 10_1101-2020_01_28_923532 30 21 drug drug NN 10_1101-2020_01_28_923532 30 22 resistance resistance NN 10_1101-2020_01_28_923532 30 23 and and CC 10_1101-2020_01_28_923532 30 24 combine combine VB 10_1101-2020_01_28_923532 30 25 biological biological NNP 10_1101-2020_01_28_923532 30 26 effects12 effects12 NNP 10_1101-2020_01_28_923532 30 27 . . . 10_1101-2020_01_28_923532 31 1 Here here RB 10_1101-2020_01_28_923532 31 2 , , , 10_1101-2020_01_28_923532 31 3 we -PRON- PRP 10_1101-2020_01_28_923532 31 4 propose propose VBP 10_1101-2020_01_28_923532 31 5 and and CC 10_1101-2020_01_28_923532 31 6 rigorously rigorously RB 10_1101-2020_01_28_923532 31 7 study study VB 10_1101-2020_01_28_923532 31 8 a a DT 10_1101-2020_01_28_923532 31 9 new new JJ 10_1101-2020_01_28_923532 31 10 conceptual conceptual JJ 10_1101-2020_01_28_923532 31 11 framework framework NN 10_1101-2020_01_28_923532 31 12 for for IN 10_1101-2020_01_28_923532 31 13 designing design VBG 10_1101-2020_01_28_923532 31 14 future future JJ 10_1101-2020_01_28_923532 31 15 precision precision NN 10_1101-2020_01_28_923532 31 16 oncology oncology NN 10_1101-2020_01_28_923532 31 17 treatments treatment NNS 10_1101-2020_01_28_923532 31 18 . . . 10_1101-2020_01_28_923532 32 1 It -PRON- PRP 10_1101-2020_01_28_923532 32 2 is be VBZ 10_1101-2020_01_28_923532 32 3 motivated motivate VBN 10_1101-2020_01_28_923532 32 4 by by IN 10_1101-2020_01_28_923532 32 5 the the DT 10_1101-2020_01_28_923532 32 6 growing grow VBG 10_1101-2020_01_28_923532 32 7 recognition recognition NN 10_1101-2020_01_28_923532 32 8 that that IN 10_1101-2020_01_28_923532 32 9 tumors tumor NNS 10_1101-2020_01_28_923532 32 10 typically typically RB 10_1101-2020_01_28_923532 32 11 have have VBP 10_1101-2020_01_28_923532 32 12 considerable considerable JJ 10_1101-2020_01_28_923532 32 13 intra intra JJ 10_1101-2020_01_28_923532 32 14 - - JJ 10_1101-2020_01_28_923532 32 15 tumor tumor JJ 10_1101-2020_01_28_923532 32 16 heterogeneity heterogeneity NN 10_1101-2020_01_28_923532 32 17 ( ( -LRB- 10_1101-2020_01_28_923532 32 18 ITH)13,14 ITH)13,14 NNP 10_1101-2020_01_28_923532 32 19 and and CC 10_1101-2020_01_28_923532 32 20 thus thus RB 10_1101-2020_01_28_923532 32 21 need need VBP 10_1101-2020_01_28_923532 32 22 to to TO 10_1101-2020_01_28_923532 32 23 be be VB 10_1101-2020_01_28_923532 32 24 targeted target VBN 10_1101-2020_01_28_923532 32 25 with with IN 10_1101-2020_01_28_923532 32 26 a a DT 10_1101-2020_01_28_923532 32 27 combination combination NN 10_1101-2020_01_28_923532 32 28 of of IN 10_1101-2020_01_28_923532 32 29 medicines medicine NNS 10_1101-2020_01_28_923532 32 30 such such JJ 10_1101-2020_01_28_923532 32 31 that that IN 10_1101-2020_01_28_923532 32 32 as as RB 10_1101-2020_01_28_923532 32 33 many many JJ 10_1101-2020_01_28_923532 32 34 as as IN 10_1101-2020_01_28_923532 32 35 possible possible JJ 10_1101-2020_01_28_923532 32 36 tumor tumor NN 10_1101-2020_01_28_923532 32 37 cells cell NNS 10_1101-2020_01_28_923532 32 38 are be VBP 10_1101-2020_01_28_923532 32 39 hit hit VBN 10_1101-2020_01_28_923532 32 40 by by IN 10_1101-2020_01_28_923532 32 41 at at RB 10_1101-2020_01_28_923532 32 42 least least RBS 10_1101-2020_01_28_923532 32 43 one one CD 10_1101-2020_01_28_923532 32 44 medicine medicine NN 10_1101-2020_01_28_923532 32 45 . . . 10_1101-2020_01_28_923532 33 1 Our -PRON- PRP$ 10_1101-2020_01_28_923532 33 2 analysis analysis NN 10_1101-2020_01_28_923532 33 3 is be VBZ 10_1101-2020_01_28_923532 33 4 based base VBN 10_1101-2020_01_28_923532 33 5 on on IN 10_1101-2020_01_28_923532 33 6 two two CD 10_1101-2020_01_28_923532 33 7 recently recently RB 10_1101-2020_01_28_923532 33 8 emerging emerge VBG 10_1101-2020_01_28_923532 33 9 technologies technology NNS 10_1101-2020_01_28_923532 33 10 : : : 10_1101-2020_01_28_923532 33 11 ( ( -LRB- 10_1101-2020_01_28_923532 33 12 1 1 LS 10_1101-2020_01_28_923532 33 13 ) ) -RRB- 10_1101-2020_01_28_923532 33 14 the the DT 10_1101-2020_01_28_923532 33 15 advancement advancement NN 10_1101-2020_01_28_923532 33 16 of of IN 10_1101-2020_01_28_923532 33 17 single single JJ 10_1101-2020_01_28_923532 33 18 - - HYPH 10_1101-2020_01_28_923532 33 19 cell cell NN 10_1101-2020_01_28_923532 33 20 transcriptomics transcriptomic NNS 10_1101-2020_01_28_923532 33 21 and and CC 10_1101-2020_01_28_923532 33 22 proteomics proteomic NNS 10_1101-2020_01_28_923532 33 23 measurements measurement NNS 10_1101-2020_01_28_923532 33 24 from from IN 10_1101-2020_01_28_923532 33 25 patients patient NNS 10_1101-2020_01_28_923532 33 26 ’ ’ POS 10_1101-2020_01_28_923532 33 27 tumors tumor NNS 10_1101-2020_01_28_923532 33 28 , , , 10_1101-2020_01_28_923532 33 29 which which WDT 10_1101-2020_01_28_923532 33 30 is be VBZ 10_1101-2020_01_28_923532 33 31 anticipated anticipate VBN 10_1101-2020_01_28_923532 33 32 to to TO 10_1101-2020_01_28_923532 33 33 gradually gradually RB 10_1101-2020_01_28_923532 33 34 enter enter VB 10_1101-2020_01_28_923532 33 35 into into IN 10_1101-2020_01_28_923532 33 36 clinical clinical JJ 10_1101-2020_01_28_923532 33 37 use15 use15 NNP 10_1101-2020_01_28_923532 33 38 , , , 10_1101-2020_01_28_923532 33 39 and and CC 10_1101-2020_01_28_923532 33 40 ( ( -LRB- 10_1101-2020_01_28_923532 33 41 2 2 LS 10_1101-2020_01_28_923532 33 42 ) ) -RRB- 10_1101-2020_01_28_923532 33 43 the the DT 10_1101-2020_01_28_923532 33 44 introduction introduction NN 10_1101-2020_01_28_923532 33 45 of of IN 10_1101-2020_01_28_923532 33 46 “ " `` 10_1101-2020_01_28_923532 33 47 modular modular JJ 10_1101-2020_01_28_923532 33 48 ” " '' 10_1101-2020_01_28_923532 33 49 treatments treatment NNS 10_1101-2020_01_28_923532 33 50 that that WDT 10_1101-2020_01_28_923532 33 51 target target VBP 10_1101-2020_01_28_923532 33 52 specific specific JJ 10_1101-2020_01_28_923532 33 53 overexpressed overexpresse VBN 10_1101-2020_01_28_923532 33 54 genes gene NNS 10_1101-2020_01_28_923532 33 55 / / SYM 10_1101-2020_01_28_923532 33 56 proteins protein NNS 10_1101-2020_01_28_923532 33 57 to to TO 10_1101-2020_01_28_923532 33 58 recognize recognize VB 10_1101-2020_01_28_923532 33 59 cells cell NNS 10_1101-2020_01_28_923532 33 60 in in IN 10_1101-2020_01_28_923532 33 61 a a DT 10_1101-2020_01_28_923532 33 62 specific specific JJ 10_1101-2020_01_28_923532 33 63 manner manner NN 10_1101-2020_01_28_923532 33 64 and and CC 10_1101-2020_01_28_923532 33 65 then then RB 10_1101-2020_01_28_923532 33 66 use use VBP 10_1101-2020_01_28_923532 33 67 either either CC 10_1101-2020_01_28_923532 33 68 the the DT 10_1101-2020_01_28_923532 33 69 T T NNP 10_1101-2020_01_28_923532 33 70 cell cell NN 10_1101-2020_01_28_923532 33 71 immune immune JJ 10_1101-2020_01_28_923532 33 72 response response NN 10_1101-2020_01_28_923532 33 73 or or CC 10_1101-2020_01_28_923532 33 74 a a DT 10_1101-2020_01_28_923532 33 75 lethal lethal JJ 10_1101-2020_01_28_923532 33 76 toxin toxin NN 10_1101-2020_01_28_923532 33 77 to to TO 10_1101-2020_01_28_923532 33 78 kill kill VB 10_1101-2020_01_28_923532 33 79 the the DT 10_1101-2020_01_28_923532 33 80 tumor tumor NN 10_1101-2020_01_28_923532 33 81 cells cell NNS 10_1101-2020_01_28_923532 33 82 preferentially preferentially RB 10_1101-2020_01_28_923532 33 83 . . . 10_1101-2020_01_28_923532 34 1 Based base VBN 10_1101-2020_01_28_923532 34 2 on on IN 10_1101-2020_01_28_923532 34 3 these these DT 10_1101-2020_01_28_923532 34 4 two two CD 10_1101-2020_01_28_923532 34 5 foundations foundation NNS 10_1101-2020_01_28_923532 34 6 , , , 10_1101-2020_01_28_923532 34 7 we -PRON- PRP 10_1101-2020_01_28_923532 34 8 formulate formulate VBP 10_1101-2020_01_28_923532 34 9 and and CC 10_1101-2020_01_28_923532 34 10 systematically systematically RB 10_1101-2020_01_28_923532 34 11 answer answer VB 10_1101-2020_01_28_923532 34 12 two two CD 10_1101-2020_01_28_923532 34 13 basic basic JJ 10_1101-2020_01_28_923532 34 14 questions question NNS 10_1101-2020_01_28_923532 34 15 . . . 10_1101-2020_01_28_923532 35 1 First first RB 10_1101-2020_01_28_923532 35 2 , , , 10_1101-2020_01_28_923532 35 3 how how WRB 10_1101-2020_01_28_923532 35 4 many many JJ 10_1101-2020_01_28_923532 35 5 targeted target VBN 10_1101-2020_01_28_923532 35 6 treatments treatment NNS 10_1101-2020_01_28_923532 35 7 are be VBP 10_1101-2020_01_28_923532 35 8 needed need VBN 10_1101-2020_01_28_923532 35 9 to to TO 10_1101-2020_01_28_923532 35 10 selectively selectively RB 10_1101-2020_01_28_923532 35 11 kill kill VB 10_1101-2020_01_28_923532 35 12 most most JJS 10_1101-2020_01_28_923532 35 13 tumor tumor NN 10_1101-2020_01_28_923532 35 14 cells cell NNS 10_1101-2020_01_28_923532 35 15 while while IN 10_1101-2020_01_28_923532 35 16 sparing spare VBG 10_1101-2020_01_28_923532 35 17 most most JJS 10_1101-2020_01_28_923532 35 18 of of IN 10_1101-2020_01_28_923532 35 19 the the DT 10_1101-2020_01_28_923532 35 20 non non JJ 10_1101-2020_01_28_923532 35 21 - - JJ 10_1101-2020_01_28_923532 35 22 tumor tumor JJ 10_1101-2020_01_28_923532 35 23 cells cell NNS 10_1101-2020_01_28_923532 35 24 in in IN 10_1101-2020_01_28_923532 35 25 a a DT 10_1101-2020_01_28_923532 35 26 given give VBN 10_1101-2020_01_28_923532 35 27 patient patient NN 10_1101-2020_01_28_923532 35 28 ? ? . 10_1101-2020_01_28_923532 36 1 And and CC 10_1101-2020_01_28_923532 36 2 second second RB 10_1101-2020_01_28_923532 36 3 , , , 10_1101-2020_01_28_923532 36 4 given give VBN 10_1101-2020_01_28_923532 36 5 a a DT 10_1101-2020_01_28_923532 36 6 cohort cohort NN 10_1101-2020_01_28_923532 36 7 of of IN 10_1101-2020_01_28_923532 36 8 patients patient NNS 10_1101-2020_01_28_923532 36 9 to to TO 10_1101-2020_01_28_923532 36 10 treat treat VB 10_1101-2020_01_28_923532 36 11 , , , 10_1101-2020_01_28_923532 36 12 how how WRB 10_1101-2020_01_28_923532 36 13 many many JJ 10_1101-2020_01_28_923532 36 14 distinct distinct JJ 10_1101-2020_01_28_923532 36 15 single single JJ 10_1101-2020_01_28_923532 36 16 - - HYPH 10_1101-2020_01_28_923532 36 17 target target NN 10_1101-2020_01_28_923532 36 18 treatments treatment NNS 10_1101-2020_01_28_923532 36 19 need need VBP 10_1101-2020_01_28_923532 36 20 to to TO 10_1101-2020_01_28_923532 36 21 be be VB 10_1101-2020_01_28_923532 36 22 prepared prepare VBN 10_1101-2020_01_28_923532 36 23 beforehand beforehand RB 10_1101-2020_01_28_923532 36 24 so so IN 10_1101-2020_01_28_923532 36 25 that that IN 10_1101-2020_01_28_923532 36 26 there there EX 10_1101-2020_01_28_923532 36 27 is be VBZ 10_1101-2020_01_28_923532 36 28 a a DT 10_1101-2020_01_28_923532 36 29 combination combination NN 10_1101-2020_01_28_923532 36 30 that that WDT 10_1101-2020_01_28_923532 36 31 kills kill VBZ 10_1101-2020_01_28_923532 36 32 at at IN 10_1101-2020_01_28_923532 36 33 least least JJS 10_1101-2020_01_28_923532 36 34 a a DT 10_1101-2020_01_28_923532 36 35 specified specify VBN 10_1101-2020_01_28_923532 36 36 proportion proportion NN 10_1101-2020_01_28_923532 36 37 of of IN 10_1101-2020_01_28_923532 36 38 the the DT 10_1101-2020_01_28_923532 36 39 tumor tumor NN 10_1101-2020_01_28_923532 36 40 cells cell NNS 10_1101-2020_01_28_923532 36 41 of of IN 10_1101-2020_01_28_923532 36 42 each each DT 10_1101-2020_01_28_923532 36 43 patient patient NN 10_1101-2020_01_28_923532 36 44 ? ? . 10_1101-2020_01_28_923532 37 1 We -PRON- PRP 10_1101-2020_01_28_923532 37 2 focus focus VBP 10_1101-2020_01_28_923532 37 3 our -PRON- PRP$ 10_1101-2020_01_28_923532 37 4 analysis analysis NN 10_1101-2020_01_28_923532 37 5 on on IN 10_1101-2020_01_28_923532 37 6 genes gene NNS 10_1101-2020_01_28_923532 37 7 encoding encode VBG 10_1101-2020_01_28_923532 37 8 protein protein NN 10_1101-2020_01_28_923532 37 9 targets target NNS 10_1101-2020_01_28_923532 37 10 that that WDT 10_1101-2020_01_28_923532 37 11 encode encode VBP 10_1101-2020_01_28_923532 37 12 receptors receptor NNS 10_1101-2020_01_28_923532 37 13 on on IN 10_1101-2020_01_28_923532 37 14 the the DT 10_1101-2020_01_28_923532 37 15 cell cell NN 10_1101-2020_01_28_923532 37 16 surface surface NN 10_1101-2020_01_28_923532 37 17 , , , 10_1101-2020_01_28_923532 37 18 as as IN 10_1101-2020_01_28_923532 37 19 these these DT 10_1101-2020_01_28_923532 37 20 may may MD 10_1101-2020_01_28_923532 37 21 be be VB 10_1101-2020_01_28_923532 37 22 precisely precisely RB 10_1101-2020_01_28_923532 37 23 targeted target VBN 10_1101-2020_01_28_923532 37 24 by by IN 10_1101-2020_01_28_923532 37 25 any any DT 10_1101-2020_01_28_923532 37 26 one one CD 10_1101-2020_01_28_923532 37 27 of of IN 10_1101-2020_01_28_923532 37 28 at at RB 10_1101-2020_01_28_923532 37 29 least least JJS 10_1101-2020_01_28_923532 37 30 six six CD 10_1101-2020_01_28_923532 37 31 technologies technology NNS 10_1101-2020_01_28_923532 37 32 : : : 10_1101-2020_01_28_923532 37 33 e.g. e.g. RB 10_1101-2020_01_28_923532 37 34 , , , 10_1101-2020_01_28_923532 37 35 by by IN 10_1101-2020_01_28_923532 37 36 CAR- CAR- NNP 10_1101-2020_01_28_923532 37 37 T T NNP 10_1101-2020_01_28_923532 37 38 therapy16 therapy16 NN 10_1101-2020_01_28_923532 37 39 , , , 10_1101-2020_01_28_923532 37 40 immunotoxins immunotoxin NNS 10_1101-2020_01_28_923532 37 41 ligated ligate VBN 10_1101-2020_01_28_923532 37 42 to to IN 10_1101-2020_01_28_923532 37 43 antibodies17 antibodies17 CD 10_1101-2020_01_28_923532 37 44 - - SYM 10_1101-2020_01_28_923532 37 45 18 18 CD 10_1101-2020_01_28_923532 37 46 , , , 10_1101-2020_01_28_923532 37 47 immunotoxins immunotoxin NNS 10_1101-2020_01_28_923532 37 48 ligated ligate VBN 10_1101-2020_01_28_923532 37 49 to to IN 10_1101-2020_01_28_923532 37 50 mimicking mimic VBG 10_1101-2020_01_28_923532 37 51 105 105 CD 10_1101-2020_01_28_923532 37 52 and and CC 10_1101-2020_01_28_923532 37 53 is be VBZ 10_1101-2020_01_28_923532 37 54 also also RB 10_1101-2020_01_28_923532 37 55 made make VBN 10_1101-2020_01_28_923532 37 56 available available JJ 10_1101-2020_01_28_923532 37 57 for for IN 10_1101-2020_01_28_923532 37 58 use use NN 10_1101-2020_01_28_923532 37 59 under under IN 10_1101-2020_01_28_923532 37 60 a a DT 10_1101-2020_01_28_923532 37 61 CC0 CC0 NNP 10_1101-2020_01_28_923532 37 62 license license NN 10_1101-2020_01_28_923532 37 63 . . . 10_1101-2020_01_28_923532 38 1 ( ( -LRB- 10_1101-2020_01_28_923532 38 2 which which WDT 10_1101-2020_01_28_923532 38 3 was be VBD 10_1101-2020_01_28_923532 38 4 not not RB 10_1101-2020_01_28_923532 38 5 certified certify VBN 10_1101-2020_01_28_923532 38 6 by by IN 10_1101-2020_01_28_923532 38 7 peer peer NN 10_1101-2020_01_28_923532 38 8 review review NN 10_1101-2020_01_28_923532 38 9 ) ) -RRB- 10_1101-2020_01_28_923532 38 10 is be VBZ 10_1101-2020_01_28_923532 38 11 the the DT 10_1101-2020_01_28_923532 38 12 author author NN 10_1101-2020_01_28_923532 38 13 / / SYM 10_1101-2020_01_28_923532 38 14 funder funder NN 10_1101-2020_01_28_923532 38 15 . . . 10_1101-2020_01_28_923532 39 1 This this DT 10_1101-2020_01_28_923532 39 2 article article NN 10_1101-2020_01_28_923532 39 3 is be VBZ 10_1101-2020_01_28_923532 39 4 a a DT 10_1101-2020_01_28_923532 39 5 US US NNP 10_1101-2020_01_28_923532 39 6 Government Government NNP 10_1101-2020_01_28_923532 39 7 work work NN 10_1101-2020_01_28_923532 39 8 . . . 10_1101-2020_01_28_923532 40 1 It -PRON- PRP 10_1101-2020_01_28_923532 40 2 is be VBZ 10_1101-2020_01_28_923532 40 3 not not RB 10_1101-2020_01_28_923532 40 4 subject subject JJ 10_1101-2020_01_28_923532 40 5 to to IN 10_1101-2020_01_28_923532 40 6 copyright copyright NN 10_1101-2020_01_28_923532 40 7 under under IN 10_1101-2020_01_28_923532 40 8 17 17 CD 10_1101-2020_01_28_923532 40 9 USC usc NN 10_1101-2020_01_28_923532 40 10 The the DT 10_1101-2020_01_28_923532 40 11 copyright copyright NN 10_1101-2020_01_28_923532 40 12 holder holder NN 10_1101-2020_01_28_923532 40 13 for for IN 10_1101-2020_01_28_923532 40 14 this this DT 10_1101-2020_01_28_923532 40 15 preprintthis preprintthis NN 10_1101-2020_01_28_923532 40 16 version version NN 10_1101-2020_01_28_923532 40 17 posted post VBD 10_1101-2020_01_28_923532 40 18 February February NNP 10_1101-2020_01_28_923532 40 19 12 12 CD 10_1101-2020_01_28_923532 40 20 , , , 10_1101-2020_01_28_923532 40 21 2021 2021 CD 10_1101-2020_01_28_923532 40 22 . . . 10_1101-2020_01_28_923532 40 23 ; ; : 10_1101-2020_01_28_923532 40 24 https://doi.org/10.1101/2020.01.28.923532doi https://doi.org/10.1101/2020.01.28.923532doi ADD 10_1101-2020_01_28_923532 40 25 : : : 10_1101-2020_01_28_923532 40 26 bioRxiv biorxiv VB 10_1101-2020_01_28_923532 40 27 preprint preprint NN 10_1101-2020_01_28_923532 40 28 https://doi.org/10.1101/2020.01.28.923532 https://doi.org/10.1101/2020.01.28.923532 UH 10_1101-2020_01_28_923532 40 29 5 5 CD 10_1101-2020_01_28_923532 40 30 peptides19 peptides19 NN 10_1101-2020_01_28_923532 40 31 , , , 10_1101-2020_01_28_923532 40 32 conventional conventional JJ 10_1101-2020_01_28_923532 40 33 chemotherapy chemotherapy NN 10_1101-2020_01_28_923532 40 34 ligated ligate VBN 10_1101-2020_01_28_923532 40 35 to to IN 10_1101-2020_01_28_923532 40 36 nanoparticles20 nanoparticles20 NNP 10_1101-2020_01_28_923532 40 37 , , , 10_1101-2020_01_28_923532 40 38 degraders degrader NNS 10_1101-2020_01_28_923532 40 39 associated associate VBN 10_1101-2020_01_28_923532 40 40 with with IN 10_1101-2020_01_28_923532 40 41 ubiquitin ubiquitin NNP 10_1101-2020_01_28_923532 40 42 E3 E3 NNP 10_1101-2020_01_28_923532 40 43 ligases21 ligases21 NN 10_1101-2020_01_28_923532 40 44 and and CC 10_1101-2020_01_28_923532 40 45 designed design VBN 10_1101-2020_01_28_923532 40 46 ankyrin ankyrin NN 10_1101-2020_01_28_923532 40 47 repeat repeat NN 10_1101-2020_01_28_923532 40 48 proteins protein NNS 10_1101-2020_01_28_923532 40 49 ( ( -LRB- 10_1101-2020_01_28_923532 40 50 DARPins)22,23 darpins)22,23 UH 10_1101-2020_01_28_923532 40 51 . . . 10_1101-2020_01_28_923532 41 1 These these DT 10_1101-2020_01_28_923532 41 2 treatments treatment NNS 10_1101-2020_01_28_923532 41 3 are be VBP 10_1101-2020_01_28_923532 41 4 all all RB 10_1101-2020_01_28_923532 41 5 “ " `` 10_1101-2020_01_28_923532 41 6 modular modular JJ 10_1101-2020_01_28_923532 41 7 ” " '' 10_1101-2020_01_28_923532 41 8 , , , 10_1101-2020_01_28_923532 41 9 including include VBG 10_1101-2020_01_28_923532 41 10 one one CD 10_1101-2020_01_28_923532 41 11 part part NN 10_1101-2020_01_28_923532 41 12 that that WDT 10_1101-2020_01_28_923532 41 13 specifically specifically RB 10_1101-2020_01_28_923532 41 14 targets target VBZ 10_1101-2020_01_28_923532 41 15 the the DT 10_1101-2020_01_28_923532 41 16 tumor tumor NN 10_1101-2020_01_28_923532 41 17 cell cell NN 10_1101-2020_01_28_923532 41 18 via via IN 10_1101-2020_01_28_923532 41 19 one one CD 10_1101-2020_01_28_923532 41 20 gene gene NN 10_1101-2020_01_28_923532 41 21 / / SYM 10_1101-2020_01_28_923532 41 22 protein protein NN 10_1101-2020_01_28_923532 41 23 and and CC 10_1101-2020_01_28_923532 41 24 another another DT 10_1101-2020_01_28_923532 41 25 part part NN 10_1101-2020_01_28_923532 41 26 , , , 10_1101-2020_01_28_923532 41 27 the the DT 10_1101-2020_01_28_923532 41 28 cytotoxic cytotoxic JJ 10_1101-2020_01_28_923532 41 29 mechanism mechanism NN 10_1101-2020_01_28_923532 41 30 that that WDT 10_1101-2020_01_28_923532 41 31 kills kill VBZ 10_1101-2020_01_28_923532 41 32 the the DT 10_1101-2020_01_28_923532 41 33 cells cell NNS 10_1101-2020_01_28_923532 41 34 . . . 10_1101-2020_01_28_923532 42 1 Two two CD 10_1101-2020_01_28_923532 42 2 recent recent JJ 10_1101-2020_01_28_923532 42 3 genome genome NN 10_1101-2020_01_28_923532 42 4 - - HYPH 10_1101-2020_01_28_923532 42 5 wide wide JJ 10_1101-2020_01_28_923532 42 6 analyses analysis NNS 10_1101-2020_01_28_923532 42 7 of of IN 10_1101-2020_01_28_923532 42 8 modular modular JJ 10_1101-2020_01_28_923532 42 9 therapies therapy NNS 10_1101-2020_01_28_923532 42 10 have have VBP 10_1101-2020_01_28_923532 42 11 focused focus VBN 10_1101-2020_01_28_923532 42 12 on on IN 10_1101-2020_01_28_923532 42 13 CAR CAR NNP 10_1101-2020_01_28_923532 42 14 - - HYPH 10_1101-2020_01_28_923532 42 15 T T NNP 10_1101-2020_01_28_923532 42 16 therapy24,25 therapy24,25 NNP 10_1101-2020_01_28_923532 42 17 , , , 10_1101-2020_01_28_923532 42 18 so so RB 10_1101-2020_01_28_923532 42 19 we -PRON- PRP 10_1101-2020_01_28_923532 42 20 focus focus VBP 10_1101-2020_01_28_923532 42 21 first first RB 10_1101-2020_01_28_923532 42 22 on on IN 10_1101-2020_01_28_923532 42 23 this this DT 10_1101-2020_01_28_923532 42 24 technology technology NN 10_1101-2020_01_28_923532 42 25 to to TO 10_1101-2020_01_28_923532 42 26 put put VB 10_1101-2020_01_28_923532 42 27 our -PRON- PRP$ 10_1101-2020_01_28_923532 42 28 work work NN 10_1101-2020_01_28_923532 42 29 in in IN 10_1101-2020_01_28_923532 42 30 context context NN 10_1101-2020_01_28_923532 42 31 . . . 10_1101-2020_01_28_923532 43 1 In in IN 10_1101-2020_01_28_923532 43 2 the the DT 10_1101-2020_01_28_923532 43 3 original original JJ 10_1101-2020_01_28_923532 43 4 formulation formulation NN 10_1101-2020_01_28_923532 43 5 , , , 10_1101-2020_01_28_923532 43 6 CAR CAR NNP 10_1101-2020_01_28_923532 43 7 - - HYPH 10_1101-2020_01_28_923532 43 8 T t NN 10_1101-2020_01_28_923532 43 9 therapy therapy NN 10_1101-2020_01_28_923532 43 10 used use VBD 10_1101-2020_01_28_923532 43 11 one one CD 10_1101-2020_01_28_923532 43 12 cell cell NN 10_1101-2020_01_28_923532 43 13 surface surface NN 10_1101-2020_01_28_923532 43 14 target target NN 10_1101-2020_01_28_923532 43 15 that that WDT 10_1101-2020_01_28_923532 43 16 marks mark VBZ 10_1101-2020_01_28_923532 43 17 the the DT 10_1101-2020_01_28_923532 43 18 cells cell NNS 10_1101-2020_01_28_923532 43 19 of of IN 10_1101-2020_01_28_923532 43 20 interest interest NN 10_1101-2020_01_28_923532 43 21 , , , 10_1101-2020_01_28_923532 43 22 such such JJ 10_1101-2020_01_28_923532 43 23 as as IN 10_1101-2020_01_28_923532 43 24 CD19 CD19 NNP 10_1101-2020_01_28_923532 43 25 as as IN 10_1101-2020_01_28_923532 43 26 a a DT 10_1101-2020_01_28_923532 43 27 marker marker NN 10_1101-2020_01_28_923532 43 28 for for IN 10_1101-2020_01_28_923532 43 29 B b NN 10_1101-2020_01_28_923532 43 30 cells cell NNS 10_1101-2020_01_28_923532 43 31 . . . 10_1101-2020_01_28_923532 44 1 To to IN 10_1101-2020_01_28_923532 44 2 date date NN 10_1101-2020_01_28_923532 44 3 , , , 10_1101-2020_01_28_923532 44 4 CAR CAR NNP 10_1101-2020_01_28_923532 44 5 - - HYPH 10_1101-2020_01_28_923532 44 6 T t NN 10_1101-2020_01_28_923532 44 7 therapy therapy NN 10_1101-2020_01_28_923532 44 8 has have VBZ 10_1101-2020_01_28_923532 44 9 been be VBN 10_1101-2020_01_28_923532 44 10 effective effective JJ 10_1101-2020_01_28_923532 44 11 in in IN 10_1101-2020_01_28_923532 44 12 achieving achieve VBG 10_1101-2020_01_28_923532 44 13 remissions remission NNS 10_1101-2020_01_28_923532 44 14 for for IN 10_1101-2020_01_28_923532 44 15 some some DT 10_1101-2020_01_28_923532 44 16 blood blood NN 10_1101-2020_01_28_923532 44 17 cancers16,26 cancers16,26 NN 10_1101-2020_01_28_923532 44 18 , , , 10_1101-2020_01_28_923532 44 19 but but CC 10_1101-2020_01_28_923532 44 20 less less RBR 10_1101-2020_01_28_923532 44 21 effective effective JJ 10_1101-2020_01_28_923532 44 22 for for IN 10_1101-2020_01_28_923532 44 23 solid solid JJ 10_1101-2020_01_28_923532 44 24 tumors tumor NNS 10_1101-2020_01_28_923532 44 25 . . . 10_1101-2020_01_28_923532 45 1 MacKay MacKay NNP 10_1101-2020_01_28_923532 45 2 et et NNP 10_1101-2020_01_28_923532 45 3 al.25 al.25 IN 10_1101-2020_01_28_923532 45 4 focused focus VBD 10_1101-2020_01_28_923532 45 5 primarily primarily RB 10_1101-2020_01_28_923532 45 6 on on IN 10_1101-2020_01_28_923532 45 7 single single JJ 10_1101-2020_01_28_923532 45 8 targets target NNS 10_1101-2020_01_28_923532 45 9 and and CC 10_1101-2020_01_28_923532 45 10 looked look VBD 10_1101-2020_01_28_923532 45 11 at at IN 10_1101-2020_01_28_923532 45 12 combinations combination NNS 10_1101-2020_01_28_923532 45 13 of of IN 10_1101-2020_01_28_923532 45 14 two two CD 10_1101-2020_01_28_923532 45 15 targets target NNS 10_1101-2020_01_28_923532 45 16 and and CC 10_1101-2020_01_28_923532 45 17 did do VBD 10_1101-2020_01_28_923532 45 18 all all DT 10_1101-2020_01_28_923532 45 19 analysis analysis NN 10_1101-2020_01_28_923532 45 20 in in IN 10_1101-2020_01_28_923532 45 21 silico silico NNP 10_1101-2020_01_28_923532 45 22 . . . 10_1101-2020_01_28_923532 46 1 Dannenfelser Dannenfelser NNP 10_1101-2020_01_28_923532 46 2 et et NNP 10_1101-2020_01_28_923532 46 3 al.24 al.24 NNP 10_1101-2020_01_28_923532 46 4 focused focus VBD 10_1101-2020_01_28_923532 46 5 on on IN 10_1101-2020_01_28_923532 46 6 predicting predict VBG 10_1101-2020_01_28_923532 46 7 combinations combination NNS 10_1101-2020_01_28_923532 46 8 of of IN 10_1101-2020_01_28_923532 46 9 two two CD 10_1101-2020_01_28_923532 46 10 and and CC 10_1101-2020_01_28_923532 46 11 three three CD 10_1101-2020_01_28_923532 46 12 targets target NNS 10_1101-2020_01_28_923532 46 13 and and CC 10_1101-2020_01_28_923532 46 14 did do VBD 10_1101-2020_01_28_923532 46 15 most most JJS 10_1101-2020_01_28_923532 46 16 of of IN 10_1101-2020_01_28_923532 46 17 their -PRON- PRP$ 10_1101-2020_01_28_923532 46 18 work work NN 10_1101-2020_01_28_923532 46 19 in in IN 10_1101-2020_01_28_923532 46 20 silico silico NN 10_1101-2020_01_28_923532 46 21 , , , 10_1101-2020_01_28_923532 46 22 with with IN 10_1101-2020_01_28_923532 46 23 in in IN 10_1101-2020_01_28_923532 46 24 vitro vitro FW 10_1101-2020_01_28_923532 46 25 validation validation NN 10_1101-2020_01_28_923532 46 26 of of IN 10_1101-2020_01_28_923532 46 27 two two CD 10_1101-2020_01_28_923532 46 28 high high RB 10_1101-2020_01_28_923532 46 29 - - HYPH 10_1101-2020_01_28_923532 46 30 scoring score VBG 10_1101-2020_01_28_923532 46 31 predicted predict VBN 10_1101-2020_01_28_923532 46 32 combinations combination NNS 10_1101-2020_01_28_923532 46 33 in in IN 10_1101-2020_01_28_923532 46 34 renal renal JJ 10_1101-2020_01_28_923532 46 35 cancer cancer NN 10_1101-2020_01_28_923532 46 36 . . . 10_1101-2020_01_28_923532 47 1 Importantly importantly RB 10_1101-2020_01_28_923532 47 2 , , , 10_1101-2020_01_28_923532 47 3 these these DT 10_1101-2020_01_28_923532 47 4 studies study NNS 10_1101-2020_01_28_923532 47 5 have have VBP 10_1101-2020_01_28_923532 47 6 analyzed analyze VBN 10_1101-2020_01_28_923532 47 7 bulk bulk JJ 10_1101-2020_01_28_923532 47 8 tumor tumor NN 10_1101-2020_01_28_923532 47 9 and and CC 10_1101-2020_01_28_923532 47 10 normal normal JJ 10_1101-2020_01_28_923532 47 11 expression expression NN 10_1101-2020_01_28_923532 47 12 data datum NNS 10_1101-2020_01_28_923532 47 13 to to TO 10_1101-2020_01_28_923532 47 14 identify identify VB 10_1101-2020_01_28_923532 47 15 likely likely JJ 10_1101-2020_01_28_923532 47 16 targets target NNS 10_1101-2020_01_28_923532 47 17 . . . 10_1101-2020_01_28_923532 48 1 Here here RB 10_1101-2020_01_28_923532 48 2 we -PRON- PRP 10_1101-2020_01_28_923532 48 3 present present VBP 10_1101-2020_01_28_923532 48 4 the the DT 10_1101-2020_01_28_923532 48 5 first first JJ 10_1101-2020_01_28_923532 48 6 analysis analysis NN 10_1101-2020_01_28_923532 48 7 that that WDT 10_1101-2020_01_28_923532 48 8 aims aim VBZ 10_1101-2020_01_28_923532 48 9 to to TO 10_1101-2020_01_28_923532 48 10 identify identify VB 10_1101-2020_01_28_923532 48 11 modular modular JJ 10_1101-2020_01_28_923532 48 12 targets target NNS 10_1101-2020_01_28_923532 48 13 based base VBN 10_1101-2020_01_28_923532 48 14 on on IN 10_1101-2020_01_28_923532 48 15 the the DT 10_1101-2020_01_28_923532 48 16 analysis analysis NN 10_1101-2020_01_28_923532 48 17 of of IN 10_1101-2020_01_28_923532 48 18 tumor tumor NN 10_1101-2020_01_28_923532 48 19 single single JJ 10_1101-2020_01_28_923532 48 20 - - HYPH 10_1101-2020_01_28_923532 48 21 cell cell NN 10_1101-2020_01_28_923532 48 22 transcriptomics transcriptomic NNS 10_1101-2020_01_28_923532 48 23 . . . 10_1101-2020_01_28_923532 49 1 This this DT 10_1101-2020_01_28_923532 49 2 enables enable VBZ 10_1101-2020_01_28_923532 49 3 to to TO 10_1101-2020_01_28_923532 49 4 study study VB 10_1101-2020_01_28_923532 49 5 the the DT 10_1101-2020_01_28_923532 49 6 research research NN 10_1101-2020_01_28_923532 49 7 questions question NNS 10_1101-2020_01_28_923532 49 8 at at IN 10_1101-2020_01_28_923532 49 9 a a DT 10_1101-2020_01_28_923532 49 10 higher high JJR 10_1101-2020_01_28_923532 49 11 resolution resolution NN 10_1101-2020_01_28_923532 49 12 but but CC 10_1101-2020_01_28_923532 49 13 presents present VBZ 10_1101-2020_01_28_923532 49 14 new new JJ 10_1101-2020_01_28_923532 49 15 analytical analytical JJ 10_1101-2020_01_28_923532 49 16 challenges challenge NNS 10_1101-2020_01_28_923532 49 17 that that WDT 10_1101-2020_01_28_923532 49 18 need need VBP 10_1101-2020_01_28_923532 49 19 to to TO 10_1101-2020_01_28_923532 49 20 be be VB 10_1101-2020_01_28_923532 49 21 addressed address VBN 10_1101-2020_01_28_923532 49 22 . . . 10_1101-2020_01_28_923532 50 1 Two two CD 10_1101-2020_01_28_923532 50 2 related related JJ 10_1101-2020_01_28_923532 50 3 difficulties difficulty NNS 10_1101-2020_01_28_923532 50 4 with with IN 10_1101-2020_01_28_923532 50 5 CAR CAR NNP 10_1101-2020_01_28_923532 50 6 - - HYPH 10_1101-2020_01_28_923532 50 7 T t NN 10_1101-2020_01_28_923532 50 8 therapy therapy NN 10_1101-2020_01_28_923532 50 9 are be VBP 10_1101-2020_01_28_923532 50 10 i i PRP 10_1101-2020_01_28_923532 50 11 ) ) -RRB- 10_1101-2020_01_28_923532 50 12 toxicity toxicity NN 10_1101-2020_01_28_923532 50 13 to to IN 10_1101-2020_01_28_923532 50 14 non non JJ 10_1101-2020_01_28_923532 50 15 - - JJ 10_1101-2020_01_28_923532 50 16 cancer cancer JJ 10_1101-2020_01_28_923532 50 17 cells27,28 cells27,28 NNP 10_1101-2020_01_28_923532 50 18 and and CC 10_1101-2020_01_28_923532 50 19 ii ii NNP 10_1101-2020_01_28_923532 50 20 ) ) -RRB- 10_1101-2020_01_28_923532 50 21 difficulty difficulty NN 10_1101-2020_01_28_923532 50 22 in in IN 10_1101-2020_01_28_923532 50 23 finding find VBG 10_1101-2020_01_28_923532 50 24 single single JJ 10_1101-2020_01_28_923532 50 25 targets target NNS 10_1101-2020_01_28_923532 50 26 that that WDT 10_1101-2020_01_28_923532 50 27 are be VBP 10_1101-2020_01_28_923532 50 28 sufficiently sufficiently RB 10_1101-2020_01_28_923532 50 29 selective25 selective25 JJ 10_1101-2020_01_28_923532 50 30 . . . 10_1101-2020_01_28_923532 51 1 To to TO 10_1101-2020_01_28_923532 51 2 address address VB 10_1101-2020_01_28_923532 51 3 the the DT 10_1101-2020_01_28_923532 51 4 toxicity toxicity NN 10_1101-2020_01_28_923532 51 5 problem problem NN 10_1101-2020_01_28_923532 51 6 , , , 10_1101-2020_01_28_923532 51 7 MacKay MacKay NNP 10_1101-2020_01_28_923532 51 8 et et NNP 10_1101-2020_01_28_923532 51 9 al.25 al.25 IN 10_1101-2020_01_28_923532 51 10 selected select VBD 10_1101-2020_01_28_923532 51 11 533 533 CD 10_1101-2020_01_28_923532 51 12 targets target NNS 10_1101-2020_01_28_923532 51 13 that that WDT 10_1101-2020_01_28_923532 51 14 had have VBD 10_1101-2020_01_28_923532 51 15 low low JJ 10_1101-2020_01_28_923532 51 16 expression expression NN 10_1101-2020_01_28_923532 51 17 in in IN 10_1101-2020_01_28_923532 51 18 most most JJS 10_1101-2020_01_28_923532 51 19 tissues tissue NNS 10_1101-2020_01_28_923532 51 20 in in IN 10_1101-2020_01_28_923532 51 21 the the DT 10_1101-2020_01_28_923532 51 22 Genotype Genotype NNP 10_1101-2020_01_28_923532 51 23 - - HYPH 10_1101-2020_01_28_923532 51 24 Tissue Tissue NNP 10_1101-2020_01_28_923532 51 25 Expression Expression NNP 10_1101-2020_01_28_923532 51 26 ( ( -LRB- 10_1101-2020_01_28_923532 51 27 GTEx GTEx NNP 10_1101-2020_01_28_923532 51 28 ) ) -RRB- 10_1101-2020_01_28_923532 51 29 data datum NNS 10_1101-2020_01_28_923532 51 30 ; ; : 10_1101-2020_01_28_923532 51 31 however however RB 10_1101-2020_01_28_923532 51 32 , , , 10_1101-2020_01_28_923532 51 33 their -PRON- PRP$ 10_1101-2020_01_28_923532 51 34 analysis analysis NN 10_1101-2020_01_28_923532 51 35 did do VBD 10_1101-2020_01_28_923532 51 36 not not RB 10_1101-2020_01_28_923532 51 37 require require VB 10_1101-2020_01_28_923532 51 38 that that IN 10_1101-2020_01_28_923532 51 39 the the DT 10_1101-2020_01_28_923532 51 40 targets target NNS 10_1101-2020_01_28_923532 51 41 are be VBP 10_1101-2020_01_28_923532 51 42 cell cell NN 10_1101-2020_01_28_923532 51 43 surface surface NN 10_1101-2020_01_28_923532 51 44 proteins protein NNS 10_1101-2020_01_28_923532 51 45 . . . 10_1101-2020_01_28_923532 52 1 We -PRON- PRP 10_1101-2020_01_28_923532 52 2 proceed proceed VBP 10_1101-2020_01_28_923532 52 3 in in IN 10_1101-2020_01_28_923532 52 4 a a DT 10_1101-2020_01_28_923532 52 5 stepwise stepwise NN 10_1101-2020_01_28_923532 52 6 manner manner NN 10_1101-2020_01_28_923532 52 7 ; ; : 10_1101-2020_01_28_923532 52 8 we -PRON- PRP 10_1101-2020_01_28_923532 52 9 start start VBP 10_1101-2020_01_28_923532 52 10 with with IN 10_1101-2020_01_28_923532 52 11 a a DT 10_1101-2020_01_28_923532 52 12 formal formal JJ 10_1101-2020_01_28_923532 52 13 analysis analysis NN 10_1101-2020_01_28_923532 52 14 of of IN 10_1101-2020_01_28_923532 52 15 a a DT 10_1101-2020_01_28_923532 52 16 space space NN 10_1101-2020_01_28_923532 52 17 of of IN 10_1101-2020_01_28_923532 52 18 1269 1269 CD 10_1101-2020_01_28_923532 52 19 candidate candidate NN 10_1101-2020_01_28_923532 52 20 cell cell NN 10_1101-2020_01_28_923532 52 21 surface surface NN 10_1101-2020_01_28_923532 52 22 receptors receptor NNS 10_1101-2020_01_28_923532 52 23 . . . 10_1101-2020_01_28_923532 53 1 Then then RB 10_1101-2020_01_28_923532 53 2 , , , 10_1101-2020_01_28_923532 53 3 we -PRON- PRP 10_1101-2020_01_28_923532 53 4 proceed proceed VBP 10_1101-2020_01_28_923532 53 5 to to TO 10_1101-2020_01_28_923532 53 6 add add VB 10_1101-2020_01_28_923532 53 7 a a DT 10_1101-2020_01_28_923532 53 8 low low JJ 10_1101-2020_01_28_923532 53 9 - - HYPH 10_1101-2020_01_28_923532 53 10 expression expression NN 10_1101-2020_01_28_923532 53 11 requirement requirement NN 10_1101-2020_01_28_923532 53 12 like like IN 10_1101-2020_01_28_923532 53 13 that that DT 10_1101-2020_01_28_923532 53 14 of of IN 10_1101-2020_01_28_923532 53 15 MacKay MacKay NNP 10_1101-2020_01_28_923532 53 16 et et NNP 10_1101-2020_01_28_923532 53 17 al.25 al.25 FW 10_1101-2020_01_28_923532 53 18 and and CC 10_1101-2020_01_28_923532 53 19 parameterized parameterize VBN 10_1101-2020_01_28_923532 53 20 by by IN 10_1101-2020_01_28_923532 53 21 a a DT 10_1101-2020_01_28_923532 53 22 transcripts transcript NNS 10_1101-2020_01_28_923532 53 23 per per IN 10_1101-2020_01_28_923532 53 24 million million CD 10_1101-2020_01_28_923532 53 25 ( ( -LRB- 10_1101-2020_01_28_923532 53 26 TPM TPM NNP 10_1101-2020_01_28_923532 53 27 ) ) -RRB- 10_1101-2020_01_28_923532 53 28 expression expression NN 10_1101-2020_01_28_923532 53 29 threshold threshold NN 10_1101-2020_01_28_923532 53 30 . . . 10_1101-2020_01_28_923532 54 1 For for IN 10_1101-2020_01_28_923532 54 2 completeness completeness JJ 10_1101-2020_01_28_923532 54 3 , , , 10_1101-2020_01_28_923532 54 4 we -PRON- PRP 10_1101-2020_01_28_923532 54 5 also also RB 10_1101-2020_01_28_923532 54 6 tested test VBD 10_1101-2020_01_28_923532 54 7 their -PRON- PRP$ 10_1101-2020_01_28_923532 54 8 set set NN 10_1101-2020_01_28_923532 54 9 of of IN 10_1101-2020_01_28_923532 54 10 533 533 CD 10_1101-2020_01_28_923532 54 11 genes gene NNS 10_1101-2020_01_28_923532 54 12 . . . 10_1101-2020_01_28_923532 55 1 To to TO 10_1101-2020_01_28_923532 55 2 address address VB 10_1101-2020_01_28_923532 55 3 the the DT 10_1101-2020_01_28_923532 55 4 selectivity selectivity NN 10_1101-2020_01_28_923532 55 5 problem problem NN 10_1101-2020_01_28_923532 55 6 , , , 10_1101-2020_01_28_923532 55 7 various various JJ 10_1101-2020_01_28_923532 55 8 groups group NNS 10_1101-2020_01_28_923532 55 9 have have VBP 10_1101-2020_01_28_923532 55 10 engineered engineer VBN 10_1101-2020_01_28_923532 55 11 composite composite JJ 10_1101-2020_01_28_923532 55 12 forms form NNS 10_1101-2020_01_28_923532 55 13 of of IN 10_1101-2020_01_28_923532 55 14 CAR CAR NNP 10_1101-2020_01_28_923532 55 15 - - HYPH 10_1101-2020_01_28_923532 55 16 T t NN 10_1101-2020_01_28_923532 55 17 treatments treatment NNS 10_1101-2020_01_28_923532 55 18 that that WDT 10_1101-2020_01_28_923532 55 19 implement implement VBP 10_1101-2020_01_28_923532 55 20 Boolean Boolean NNP 10_1101-2020_01_28_923532 55 21 AND and CC 10_1101-2020_01_28_923532 55 22 , , , 10_1101-2020_01_28_923532 55 23 OR or CC 10_1101-2020_01_28_923532 55 24 , , , 10_1101-2020_01_28_923532 55 25 and and CC 10_1101-2020_01_28_923532 55 26 NOT not RB 10_1101-2020_01_28_923532 55 27 gates gate NNS 10_1101-2020_01_28_923532 55 28 that that WDT 10_1101-2020_01_28_923532 55 29 have have VBP 10_1101-2020_01_28_923532 55 30 been be VBN 10_1101-2020_01_28_923532 55 31 tested test VBN 10_1101-2020_01_28_923532 55 32 for for IN 10_1101-2020_01_28_923532 55 33 combinations combination NNS 10_1101-2020_01_28_923532 55 34 of of IN 10_1101-2020_01_28_923532 55 35 up up IN 10_1101-2020_01_28_923532 55 36 to to TO 10_1101-2020_01_28_923532 55 37 three three CD 10_1101-2020_01_28_923532 55 38 target target NN 10_1101-2020_01_28_923532 55 39 proteins29 proteins29 NNP 10_1101-2020_01_28_923532 55 40 - - HYPH 10_1101-2020_01_28_923532 55 41 33 33 CD 10_1101-2020_01_28_923532 55 42 . . . 10_1101-2020_01_28_923532 56 1 Both both DT 10_1101-2020_01_28_923532 56 2 MacKay MacKay NNP 10_1101-2020_01_28_923532 56 3 et et FW 10_1101-2020_01_28_923532 56 4 al al NNP 10_1101-2020_01_28_923532 56 5 . . . 10_1101-2020_01_28_923532 57 1 and and CC 10_1101-2020_01_28_923532 57 2 Dannenfelser Dannenfelser NNP 10_1101-2020_01_28_923532 57 3 et et FW 10_1101-2020_01_28_923532 57 4 al al NNP 10_1101-2020_01_28_923532 57 5 . . . 10_1101-2020_01_28_923532 58 1 presented present VBN 10_1101-2020_01_28_923532 58 2 in in IN 10_1101-2020_01_28_923532 58 3 silico silico NN 10_1101-2020_01_28_923532 58 4 methods method NNS 10_1101-2020_01_28_923532 58 5 focusing focus VBG 10_1101-2020_01_28_923532 58 6 on on IN 10_1101-2020_01_28_923532 58 7 AND and CC 10_1101-2020_01_28_923532 58 8 gates gate NNS 10_1101-2020_01_28_923532 58 9 and and CC 10_1101-2020_01_28_923532 58 10 pairs pair NNS 10_1101-2020_01_28_923532 58 11 or or CC 10_1101-2020_01_28_923532 58 12 trios trio NNS 10_1101-2020_01_28_923532 58 13 of of IN 10_1101-2020_01_28_923532 58 14 targets target NNS 10_1101-2020_01_28_923532 58 15 ; ; : 10_1101-2020_01_28_923532 58 16 Dannenfelser Dannenfelser NNP 10_1101-2020_01_28_923532 58 17 et et FW 10_1101-2020_01_28_923532 58 18 al al NNP 10_1101-2020_01_28_923532 58 19 . . . 10_1101-2020_01_28_923532 59 1 analyzed analyze VBN 10_1101-2020_01_28_923532 59 2 2538 2538 CD 10_1101-2020_01_28_923532 59 3 likely likely JJ 10_1101-2020_01_28_923532 59 4 cell cell NN 10_1101-2020_01_28_923532 59 5 surface surface NN 10_1101-2020_01_28_923532 59 6 proteins protein NNS 10_1101-2020_01_28_923532 59 7 that that WDT 10_1101-2020_01_28_923532 59 8 are be VBP 10_1101-2020_01_28_923532 59 9 not not RB 10_1101-2020_01_28_923532 59 10 necessarily necessarily RB 10_1101-2020_01_28_923532 59 11 receptors receptor NNS 10_1101-2020_01_28_923532 59 12 . . . 10_1101-2020_01_28_923532 60 1 We -PRON- PRP 10_1101-2020_01_28_923532 60 2 have have VBP 10_1101-2020_01_28_923532 60 3 chosen choose VBN 10_1101-2020_01_28_923532 60 4 105 105 CD 10_1101-2020_01_28_923532 60 5 and and CC 10_1101-2020_01_28_923532 60 6 is be VBZ 10_1101-2020_01_28_923532 60 7 also also RB 10_1101-2020_01_28_923532 60 8 made make VBN 10_1101-2020_01_28_923532 60 9 available available JJ 10_1101-2020_01_28_923532 60 10 for for IN 10_1101-2020_01_28_923532 60 11 use use NN 10_1101-2020_01_28_923532 60 12 under under IN 10_1101-2020_01_28_923532 60 13 a a DT 10_1101-2020_01_28_923532 60 14 CC0 CC0 NNP 10_1101-2020_01_28_923532 60 15 license license NN 10_1101-2020_01_28_923532 60 16 . . . 10_1101-2020_01_28_923532 61 1 ( ( -LRB- 10_1101-2020_01_28_923532 61 2 which which WDT 10_1101-2020_01_28_923532 61 3 was be VBD 10_1101-2020_01_28_923532 61 4 not not RB 10_1101-2020_01_28_923532 61 5 certified certify VBN 10_1101-2020_01_28_923532 61 6 by by IN 10_1101-2020_01_28_923532 61 7 peer peer NN 10_1101-2020_01_28_923532 61 8 review review NN 10_1101-2020_01_28_923532 61 9 ) ) -RRB- 10_1101-2020_01_28_923532 61 10 is be VBZ 10_1101-2020_01_28_923532 61 11 the the DT 10_1101-2020_01_28_923532 61 12 author author NN 10_1101-2020_01_28_923532 61 13 / / SYM 10_1101-2020_01_28_923532 61 14 funder funder NN 10_1101-2020_01_28_923532 61 15 . . . 10_1101-2020_01_28_923532 62 1 This this DT 10_1101-2020_01_28_923532 62 2 article article NN 10_1101-2020_01_28_923532 62 3 is be VBZ 10_1101-2020_01_28_923532 62 4 a a DT 10_1101-2020_01_28_923532 62 5 US US NNP 10_1101-2020_01_28_923532 62 6 Government Government NNP 10_1101-2020_01_28_923532 62 7 work work NN 10_1101-2020_01_28_923532 62 8 . . . 10_1101-2020_01_28_923532 63 1 It -PRON- PRP 10_1101-2020_01_28_923532 63 2 is be VBZ 10_1101-2020_01_28_923532 63 3 not not RB 10_1101-2020_01_28_923532 63 4 subject subject JJ 10_1101-2020_01_28_923532 63 5 to to IN 10_1101-2020_01_28_923532 63 6 copyright copyright NN 10_1101-2020_01_28_923532 63 7 under under IN 10_1101-2020_01_28_923532 63 8 17 17 CD 10_1101-2020_01_28_923532 63 9 USC usc NN 10_1101-2020_01_28_923532 63 10 The the DT 10_1101-2020_01_28_923532 63 11 copyright copyright NN 10_1101-2020_01_28_923532 63 12 holder holder NN 10_1101-2020_01_28_923532 63 13 for for IN 10_1101-2020_01_28_923532 63 14 this this DT 10_1101-2020_01_28_923532 63 15 preprintthis preprintthis NN 10_1101-2020_01_28_923532 63 16 version version NN 10_1101-2020_01_28_923532 63 17 posted post VBD 10_1101-2020_01_28_923532 63 18 February February NNP 10_1101-2020_01_28_923532 63 19 12 12 CD 10_1101-2020_01_28_923532 63 20 , , , 10_1101-2020_01_28_923532 63 21 2021 2021 CD 10_1101-2020_01_28_923532 63 22 . . . 10_1101-2020_01_28_923532 63 23 ; ; : 10_1101-2020_01_28_923532 63 24 https://doi.org/10.1101/2020.01.28.923532doi https://doi.org/10.1101/2020.01.28.923532doi ADD 10_1101-2020_01_28_923532 63 25 : : : 10_1101-2020_01_28_923532 63 26 bioRxiv biorxiv VB 10_1101-2020_01_28_923532 63 27 preprint preprint NN 10_1101-2020_01_28_923532 63 28 https://doi.org/10.1101/2020.01.28.923532 https://doi.org/10.1101/2020.01.28.923532 UH 10_1101-2020_01_28_923532 63 29 6 6 CD 10_1101-2020_01_28_923532 63 30 to to TO 10_1101-2020_01_28_923532 63 31 focus focus VB 10_1101-2020_01_28_923532 63 32 on on IN 10_1101-2020_01_28_923532 63 33 the the DT 10_1101-2020_01_28_923532 63 34 simpler simple JJR 10_1101-2020_01_28_923532 63 35 logical logical JJ 10_1101-2020_01_28_923532 63 36 OR or CC 10_1101-2020_01_28_923532 63 37 construction construction NN 10_1101-2020_01_28_923532 63 38 because because IN 10_1101-2020_01_28_923532 63 39 that that DT 10_1101-2020_01_28_923532 63 40 can can MD 10_1101-2020_01_28_923532 63 41 be be VB 10_1101-2020_01_28_923532 63 42 achieved achieve VBN 10_1101-2020_01_28_923532 63 43 not not RB 10_1101-2020_01_28_923532 63 44 only only RB 10_1101-2020_01_28_923532 63 45 by by IN 10_1101-2020_01_28_923532 63 46 CAR CAR NNP 10_1101-2020_01_28_923532 63 47 - - HYPH 10_1101-2020_01_28_923532 63 48 T T NNP 10_1101-2020_01_28_923532 63 49 technology30,31 technology30,31 NNP 10_1101-2020_01_28_923532 63 50 , , , 10_1101-2020_01_28_923532 63 51 but but CC 10_1101-2020_01_28_923532 63 52 can can MD 10_1101-2020_01_28_923532 63 53 also also RB 10_1101-2020_01_28_923532 63 54 be be VB 10_1101-2020_01_28_923532 63 55 implemented implement VBN 10_1101-2020_01_28_923532 63 56 via via IN 10_1101-2020_01_28_923532 63 57 other other JJ 10_1101-2020_01_28_923532 63 58 modular modular JJ 10_1101-2020_01_28_923532 63 59 treatment treatment NN 10_1101-2020_01_28_923532 63 60 technologies technology NNS 10_1101-2020_01_28_923532 63 61 by by IN 10_1101-2020_01_28_923532 63 62 combining combine VBG 10_1101-2020_01_28_923532 63 63 multiple multiple JJ 10_1101-2020_01_28_923532 63 64 single single JJ 10_1101-2020_01_28_923532 63 65 - - HYPH 10_1101-2020_01_28_923532 63 66 target target NN 10_1101-2020_01_28_923532 63 67 treatments treatment NNS 10_1101-2020_01_28_923532 63 68 , , , 10_1101-2020_01_28_923532 63 69 assuming assume VBG 10_1101-2020_01_28_923532 63 70 that that IN 10_1101-2020_01_28_923532 63 71 the the DT 10_1101-2020_01_28_923532 63 72 composite composite JJ 10_1101-2020_01_28_923532 63 73 treatment treatment NN 10_1101-2020_01_28_923532 63 74 kills kill VBZ 10_1101-2020_01_28_923532 63 75 a a DT 10_1101-2020_01_28_923532 63 76 cell cell NN 10_1101-2020_01_28_923532 63 77 if if IN 10_1101-2020_01_28_923532 63 78 any any DT 10_1101-2020_01_28_923532 63 79 one one CD 10_1101-2020_01_28_923532 63 80 of of IN 10_1101-2020_01_28_923532 63 81 the the DT 10_1101-2020_01_28_923532 63 82 single single JJ 10_1101-2020_01_28_923532 63 83 treatments treatment NNS 10_1101-2020_01_28_923532 63 84 kill kill VBP 10_1101-2020_01_28_923532 63 85 the the DT 10_1101-2020_01_28_923532 63 86 cell cell NN 10_1101-2020_01_28_923532 63 87 . . . 10_1101-2020_01_28_923532 64 1 Conceptually conceptually RB 10_1101-2020_01_28_923532 64 2 , , , 10_1101-2020_01_28_923532 64 3 such such PDT 10_1101-2020_01_28_923532 64 4 a a DT 10_1101-2020_01_28_923532 64 5 logical logical JJ 10_1101-2020_01_28_923532 64 6 OR or CC 10_1101-2020_01_28_923532 64 7 combination combination NN 10_1101-2020_01_28_923532 64 8 treatment treatment NN 10_1101-2020_01_28_923532 64 9 can can MD 10_1101-2020_01_28_923532 64 10 still still RB 10_1101-2020_01_28_923532 64 11 achieve achieve VB 10_1101-2020_01_28_923532 64 12 selectivity selectivity NN 10_1101-2020_01_28_923532 64 13 by by IN 10_1101-2020_01_28_923532 64 14 choosing choose VBG 10_1101-2020_01_28_923532 64 15 targets target NNS 10_1101-2020_01_28_923532 64 16 , , , 10_1101-2020_01_28_923532 64 17 each each DT 10_1101-2020_01_28_923532 64 18 of of IN 10_1101-2020_01_28_923532 64 19 which which WDT 10_1101-2020_01_28_923532 64 20 is be VBZ 10_1101-2020_01_28_923532 64 21 expressed express VBN 10_1101-2020_01_28_923532 64 22 on on IN 10_1101-2020_01_28_923532 64 23 a a DT 10_1101-2020_01_28_923532 64 24 much much RB 10_1101-2020_01_28_923532 64 25 higher high JJR 10_1101-2020_01_28_923532 64 26 proportion proportion NN 10_1101-2020_01_28_923532 64 27 of of IN 10_1101-2020_01_28_923532 64 28 cancer cancer NN 10_1101-2020_01_28_923532 64 29 cells cell NNS 10_1101-2020_01_28_923532 64 30 than than IN 10_1101-2020_01_28_923532 64 31 non non JJ 10_1101-2020_01_28_923532 64 32 - - JJ 10_1101-2020_01_28_923532 64 33 cancer cancer JJ 10_1101-2020_01_28_923532 64 34 cells cell NNS 10_1101-2020_01_28_923532 64 35 . . . 10_1101-2020_01_28_923532 65 1 One one CD 10_1101-2020_01_28_923532 65 2 of of IN 10_1101-2020_01_28_923532 65 3 our -PRON- PRP$ 10_1101-2020_01_28_923532 65 4 key key JJ 10_1101-2020_01_28_923532 65 5 contributions contribution NNS 10_1101-2020_01_28_923532 65 6 is be VBZ 10_1101-2020_01_28_923532 65 7 to to TO 10_1101-2020_01_28_923532 65 8 show show VB 10_1101-2020_01_28_923532 65 9 that that IN 10_1101-2020_01_28_923532 65 10 by by IN 10_1101-2020_01_28_923532 65 11 using use VBG 10_1101-2020_01_28_923532 65 12 techniques technique NNS 10_1101-2020_01_28_923532 65 13 from from IN 10_1101-2020_01_28_923532 65 14 combinatorial combinatorial JJ 10_1101-2020_01_28_923532 65 15 optimization optimization NN 10_1101-2020_01_28_923532 65 16 , , , 10_1101-2020_01_28_923532 65 17 one one PRP 10_1101-2020_01_28_923532 65 18 can can MD 10_1101-2020_01_28_923532 65 19 find find VB 10_1101-2020_01_28_923532 65 20 such such JJ 10_1101-2020_01_28_923532 65 21 effective effective JJ 10_1101-2020_01_28_923532 65 22 combinations combination NNS 10_1101-2020_01_28_923532 65 23 involving involve VBG 10_1101-2020_01_28_923532 65 24 a a DT 10_1101-2020_01_28_923532 65 25 large large JJ 10_1101-2020_01_28_923532 65 26 number number NN 10_1101-2020_01_28_923532 65 27 of of IN 10_1101-2020_01_28_923532 65 28 targets target NNS 10_1101-2020_01_28_923532 65 29 , , , 10_1101-2020_01_28_923532 65 30 while while IN 10_1101-2020_01_28_923532 65 31 previous previous JJ 10_1101-2020_01_28_923532 65 32 studies study NNS 10_1101-2020_01_28_923532 65 33 were be VBD 10_1101-2020_01_28_923532 65 34 limited limit VBN 10_1101-2020_01_28_923532 65 35 to to IN 10_1101-2020_01_28_923532 65 36 at at RB 10_1101-2020_01_28_923532 65 37 most most RBS 10_1101-2020_01_28_923532 65 38 three three CD 10_1101-2020_01_28_923532 65 39 targets target NNS 10_1101-2020_01_28_923532 65 40 . . . 10_1101-2020_01_28_923532 66 1 Beyond beyond IN 10_1101-2020_01_28_923532 66 2 CAR CAR NNP 10_1101-2020_01_28_923532 66 3 - - HYPH 10_1101-2020_01_28_923532 66 4 T T NNP 10_1101-2020_01_28_923532 66 5 , , , 10_1101-2020_01_28_923532 66 6 our -PRON- PRP$ 10_1101-2020_01_28_923532 66 7 analysis analysis NN 10_1101-2020_01_28_923532 66 8 applies apply VBZ 10_1101-2020_01_28_923532 66 9 to to IN 10_1101-2020_01_28_923532 66 10 several several JJ 10_1101-2020_01_28_923532 66 11 additional additional JJ 10_1101-2020_01_28_923532 66 12 types type NNS 10_1101-2020_01_28_923532 66 13 of of IN 10_1101-2020_01_28_923532 66 14 modular modular JJ 10_1101-2020_01_28_923532 66 15 treatment treatment NN 10_1101-2020_01_28_923532 66 16 technologies technology NNS 10_1101-2020_01_28_923532 66 17 that that WDT 10_1101-2020_01_28_923532 66 18 rely rely VBP 10_1101-2020_01_28_923532 66 19 instead instead RB 10_1101-2020_01_28_923532 66 20 on on IN 10_1101-2020_01_28_923532 66 21 receptor receptor NN 10_1101-2020_01_28_923532 66 22 - - HYPH 10_1101-2020_01_28_923532 66 23 mediated mediate VBN 10_1101-2020_01_28_923532 66 24 endocytosis endocytosis NN 10_1101-2020_01_28_923532 66 25 ( ( -LRB- 10_1101-2020_01_28_923532 66 26 RME RME NNP 10_1101-2020_01_28_923532 66 27 ) ) -RRB- 10_1101-2020_01_28_923532 66 28 delivering deliver VBG 10_1101-2020_01_28_923532 66 29 a a DT 10_1101-2020_01_28_923532 66 30 toxin toxin NN 10_1101-2020_01_28_923532 66 31 via via IN 10_1101-2020_01_28_923532 66 32 a a DT 10_1101-2020_01_28_923532 66 33 targeted target VBN 10_1101-2020_01_28_923532 66 34 receptor receptor NN 10_1101-2020_01_28_923532 66 35 to to TO 10_1101-2020_01_28_923532 66 36 enter enter VB 10_1101-2020_01_28_923532 66 37 the the DT 10_1101-2020_01_28_923532 66 38 cell34,35 cell34,35 NNP 10_1101-2020_01_28_923532 66 39 . . . 10_1101-2020_01_28_923532 67 1 Like like IN 10_1101-2020_01_28_923532 67 2 CAR CAR NNP 10_1101-2020_01_28_923532 67 3 - - HYPH 10_1101-2020_01_28_923532 67 4 T T NNP 10_1101-2020_01_28_923532 67 5 , , , 10_1101-2020_01_28_923532 67 6 these these DT 10_1101-2020_01_28_923532 67 7 RME rme NN 10_1101-2020_01_28_923532 67 8 - - HYPH 10_1101-2020_01_28_923532 67 9 based base VBN 10_1101-2020_01_28_923532 67 10 technologies technology NNS 10_1101-2020_01_28_923532 67 11 do do VBP 10_1101-2020_01_28_923532 67 12 not not RB 10_1101-2020_01_28_923532 67 13 downregulate downregulate VB 10_1101-2020_01_28_923532 67 14 the the DT 10_1101-2020_01_28_923532 67 15 target target NN 10_1101-2020_01_28_923532 67 16 receptor receptor NN 10_1101-2020_01_28_923532 67 17 . . . 10_1101-2020_01_28_923532 68 1 For for IN 10_1101-2020_01_28_923532 68 2 RME rme NN 10_1101-2020_01_28_923532 68 3 technologies technology NNS 10_1101-2020_01_28_923532 68 4 and and CC 10_1101-2020_01_28_923532 68 5 other other JJ 10_1101-2020_01_28_923532 68 6 technologies technology NNS 10_1101-2020_01_28_923532 68 7 that that WDT 10_1101-2020_01_28_923532 68 8 work work VBP 10_1101-2020_01_28_923532 68 9 intracellularly intracellularly RB 10_1101-2020_01_28_923532 68 10 , , , 10_1101-2020_01_28_923532 68 11 we -PRON- PRP 10_1101-2020_01_28_923532 68 12 anticipate anticipate VBP 10_1101-2020_01_28_923532 68 13 combining combine VBG 10_1101-2020_01_28_923532 68 14 modular modular JJ 10_1101-2020_01_28_923532 68 15 treatments treatment NNS 10_1101-2020_01_28_923532 68 16 from from IN 10_1101-2020_01_28_923532 68 17 one one CD 10_1101-2020_01_28_923532 68 18 technology technology NN 10_1101-2020_01_28_923532 68 19 such such JJ 10_1101-2020_01_28_923532 68 20 that that IN 10_1101-2020_01_28_923532 68 21 all all DT 10_1101-2020_01_28_923532 68 22 treatments treatment NNS 10_1101-2020_01_28_923532 68 23 use use VBP 10_1101-2020_01_28_923532 68 24 the the DT 10_1101-2020_01_28_923532 68 25 same same JJ 10_1101-2020_01_28_923532 68 26 toxin toxin NN 10_1101-2020_01_28_923532 68 27 or or CC 10_1101-2020_01_28_923532 68 28 mechanism mechanism NN 10_1101-2020_01_28_923532 68 29 of of IN 10_1101-2020_01_28_923532 68 30 cell cell NN 10_1101-2020_01_28_923532 68 31 killing killing NN 10_1101-2020_01_28_923532 68 32 , , , 10_1101-2020_01_28_923532 68 33 thereby thereby RB 10_1101-2020_01_28_923532 68 34 mitigating mitigate VBG 10_1101-2020_01_28_923532 68 35 the the DT 10_1101-2020_01_28_923532 68 36 need need NN 10_1101-2020_01_28_923532 68 37 to to TO 10_1101-2020_01_28_923532 68 38 test test VB 10_1101-2020_01_28_923532 68 39 for for IN 10_1101-2020_01_28_923532 68 40 interaction interaction NN 10_1101-2020_01_28_923532 68 41 effects effect NNS 10_1101-2020_01_28_923532 68 42 between between IN 10_1101-2020_01_28_923532 68 43 pairs pair NNS 10_1101-2020_01_28_923532 68 44 of of IN 10_1101-2020_01_28_923532 68 45 different different JJ 10_1101-2020_01_28_923532 68 46 treatments treatment NNS 10_1101-2020_01_28_923532 68 47 . . . 10_1101-2020_01_28_923532 69 1 To to TO 10_1101-2020_01_28_923532 69 2 address address VB 10_1101-2020_01_28_923532 69 3 these these DT 10_1101-2020_01_28_923532 69 4 research research NN 10_1101-2020_01_28_923532 69 5 questions question NNS 10_1101-2020_01_28_923532 69 6 , , , 10_1101-2020_01_28_923532 69 7 we -PRON- PRP 10_1101-2020_01_28_923532 69 8 designed design VBD 10_1101-2020_01_28_923532 69 9 and and CC 10_1101-2020_01_28_923532 69 10 implemented implement VBD 10_1101-2020_01_28_923532 69 11 a a DT 10_1101-2020_01_28_923532 69 12 computational computational JJ 10_1101-2020_01_28_923532 69 13 approach approach NN 10_1101-2020_01_28_923532 69 14 named name VBN 10_1101-2020_01_28_923532 69 15 MadHitter MadHitter NNP 10_1101-2020_01_28_923532 69 16 ( ( -LRB- 10_1101-2020_01_28_923532 69 17 after after IN 10_1101-2020_01_28_923532 69 18 the the DT 10_1101-2020_01_28_923532 69 19 Mad Mad NNP 10_1101-2020_01_28_923532 69 20 Hatter Hatter NNP 10_1101-2020_01_28_923532 69 21 from from IN 10_1101-2020_01_28_923532 69 22 Alice Alice NNP 10_1101-2020_01_28_923532 69 23 in in IN 10_1101-2020_01_28_923532 69 24 Wonderland Wonderland NNP 10_1101-2020_01_28_923532 69 25 ) ) -RRB- 10_1101-2020_01_28_923532 69 26 to to TO 10_1101-2020_01_28_923532 69 27 identify identify VB 10_1101-2020_01_28_923532 69 28 optimal optimal JJ 10_1101-2020_01_28_923532 69 29 precision precision NN 10_1101-2020_01_28_923532 69 30 combination combination NN 10_1101-2020_01_28_923532 69 31 treatments treatment NNS 10_1101-2020_01_28_923532 69 32 that that WDT 10_1101-2020_01_28_923532 69 33 target target VBP 10_1101-2020_01_28_923532 69 34 membrane membrane NN 10_1101-2020_01_28_923532 69 35 receptors receptor NNS 10_1101-2020_01_28_923532 69 36 ( ( -LRB- 10_1101-2020_01_28_923532 69 37 Figure figure NN 10_1101-2020_01_28_923532 69 38 1 1 CD 10_1101-2020_01_28_923532 69 39 , , , 10_1101-2020_01_28_923532 69 40 A A NNP 10_1101-2020_01_28_923532 69 41 - - HYPH 10_1101-2020_01_28_923532 69 42 C C NNP 10_1101-2020_01_28_923532 69 43 ) ) -RRB- 10_1101-2020_01_28_923532 69 44 . . . 10_1101-2020_01_28_923532 70 1 We -PRON- PRP 10_1101-2020_01_28_923532 70 2 define define VBP 10_1101-2020_01_28_923532 70 3 three three CD 10_1101-2020_01_28_923532 70 4 key key JJ 10_1101-2020_01_28_923532 70 5 parameters parameter NNS 10_1101-2020_01_28_923532 70 6 related relate VBN 10_1101-2020_01_28_923532 70 7 to to IN 10_1101-2020_01_28_923532 70 8 the the DT 10_1101-2020_01_28_923532 70 9 stringency stringency NN 10_1101-2020_01_28_923532 70 10 of of IN 10_1101-2020_01_28_923532 70 11 killing kill VBG 10_1101-2020_01_28_923532 70 12 the the DT 10_1101-2020_01_28_923532 70 13 tumor tumor NN 10_1101-2020_01_28_923532 70 14 and and CC 10_1101-2020_01_28_923532 70 15 protecting protect VBG 10_1101-2020_01_28_923532 70 16 the the DT 10_1101-2020_01_28_923532 70 17 non non JJ 10_1101-2020_01_28_923532 70 18 - - JJ 10_1101-2020_01_28_923532 70 19 tumor tumor JJ 10_1101-2020_01_28_923532 70 20 cells cell NNS 10_1101-2020_01_28_923532 70 21 and and CC 10_1101-2020_01_28_923532 70 22 explore explore VB 10_1101-2020_01_28_923532 70 23 how how WRB 10_1101-2020_01_28_923532 70 24 the the DT 10_1101-2020_01_28_923532 70 25 optimal optimal JJ 10_1101-2020_01_28_923532 70 26 treatments treatment NNS 10_1101-2020_01_28_923532 70 27 vary vary VBP 10_1101-2020_01_28_923532 70 28 with with IN 10_1101-2020_01_28_923532 70 29 those those DT 10_1101-2020_01_28_923532 70 30 parameters parameter NNS 10_1101-2020_01_28_923532 70 31 ( ( -LRB- 10_1101-2020_01_28_923532 70 32 Figure figure NN 10_1101-2020_01_28_923532 70 33 1B 1b NN 10_1101-2020_01_28_923532 70 34 , , , 10_1101-2020_01_28_923532 70 35 C C NNP 10_1101-2020_01_28_923532 70 36 ) ) -RRB- 10_1101-2020_01_28_923532 70 37 . . . 10_1101-2020_01_28_923532 71 1 Solving solve VBG 10_1101-2020_01_28_923532 71 2 this this DT 10_1101-2020_01_28_923532 71 3 problem problem NN 10_1101-2020_01_28_923532 71 4 is be VBZ 10_1101-2020_01_28_923532 71 5 analogous analogous JJ 10_1101-2020_01_28_923532 71 6 to to IN 10_1101-2020_01_28_923532 71 7 solving solve VBG 10_1101-2020_01_28_923532 71 8 the the DT 10_1101-2020_01_28_923532 71 9 classical classical JJ 10_1101-2020_01_28_923532 71 10 “ " `` 10_1101-2020_01_28_923532 71 11 hitting hit VBG 10_1101-2020_01_28_923532 71 12 set set NN 10_1101-2020_01_28_923532 71 13 problem problem NN 10_1101-2020_01_28_923532 71 14 ” " '' 10_1101-2020_01_28_923532 71 15 in in IN 10_1101-2020_01_28_923532 71 16 combinatorial combinatorial NN 10_1101-2020_01_28_923532 71 17 algorithms36 algorithms36 NNP 10_1101-2020_01_28_923532 71 18 , , , 10_1101-2020_01_28_923532 71 19 which which WDT 10_1101-2020_01_28_923532 71 20 is be VBZ 10_1101-2020_01_28_923532 71 21 formally formally RB 10_1101-2020_01_28_923532 71 22 defined define VBN 10_1101-2020_01_28_923532 71 23 in in IN 10_1101-2020_01_28_923532 71 24 the the DT 10_1101-2020_01_28_923532 71 25 Methods Methods NNPS 10_1101-2020_01_28_923532 71 26 ( ( -LRB- 10_1101-2020_01_28_923532 71 27 see see VB 10_1101-2020_01_28_923532 71 28 also also RB 10_1101-2020_01_28_923532 71 29 Supplementary Supplementary NNP 10_1101-2020_01_28_923532 71 30 Materials material NNS 10_1101-2020_01_28_923532 71 31 1 1 CD 10_1101-2020_01_28_923532 71 32 ) ) -RRB- 10_1101-2020_01_28_923532 71 33 . . . 10_1101-2020_01_28_923532 72 1 Unlike unlike IN 10_1101-2020_01_28_923532 72 2 the the DT 10_1101-2020_01_28_923532 72 3 previous previous JJ 10_1101-2020_01_28_923532 72 4 studies study NNS 10_1101-2020_01_28_923532 72 5 on on IN 10_1101-2020_01_28_923532 72 6 CAR CAR NNP 10_1101-2020_01_28_923532 72 7 - - HYPH 10_1101-2020_01_28_923532 72 8 T t NN 10_1101-2020_01_28_923532 72 9 targets target NNS 10_1101-2020_01_28_923532 72 10 , , , 10_1101-2020_01_28_923532 72 11 we -PRON- PRP 10_1101-2020_01_28_923532 72 12 define define VBP 10_1101-2020_01_28_923532 72 13 the the DT 10_1101-2020_01_28_923532 72 14 problem problem NN 10_1101-2020_01_28_923532 72 15 in in IN 10_1101-2020_01_28_923532 72 16 a a DT 10_1101-2020_01_28_923532 72 17 personalized personalized JJ 10_1101-2020_01_28_923532 72 18 manner manner NN 10_1101-2020_01_28_923532 72 19 , , , 10_1101-2020_01_28_923532 72 20 intending intend VBG 10_1101-2020_01_28_923532 72 21 that that IN 10_1101-2020_01_28_923532 72 22 each each DT 10_1101-2020_01_28_923532 72 23 patient patient NN 10_1101-2020_01_28_923532 72 24 will will MD 10_1101-2020_01_28_923532 72 25 get get VB 10_1101-2020_01_28_923532 72 26 optimal optimal JJ 10_1101-2020_01_28_923532 72 27 treatments treatment NNS 10_1101-2020_01_28_923532 72 28 for for IN 10_1101-2020_01_28_923532 72 29 her -PRON- PRP 10_1101-2020_01_28_923532 72 30 or or CC 10_1101-2020_01_28_923532 72 31 his -PRON- PRP$ 10_1101-2020_01_28_923532 72 32 tumor tumor NN 10_1101-2020_01_28_923532 72 33 from from IN 10_1101-2020_01_28_923532 72 34 among among IN 10_1101-2020_01_28_923532 72 35 a a DT 10_1101-2020_01_28_923532 72 36 collection collection NN 10_1101-2020_01_28_923532 72 37 of of IN 10_1101-2020_01_28_923532 72 38 available available JJ 10_1101-2020_01_28_923532 72 39 treatments treatment NNS 10_1101-2020_01_28_923532 72 40 . . . 10_1101-2020_01_28_923532 73 1 105 105 CD 10_1101-2020_01_28_923532 73 2 and and CC 10_1101-2020_01_28_923532 73 3 is be VBZ 10_1101-2020_01_28_923532 73 4 also also RB 10_1101-2020_01_28_923532 73 5 made make VBN 10_1101-2020_01_28_923532 73 6 available available JJ 10_1101-2020_01_28_923532 73 7 for for IN 10_1101-2020_01_28_923532 73 8 use use NN 10_1101-2020_01_28_923532 73 9 under under IN 10_1101-2020_01_28_923532 73 10 a a DT 10_1101-2020_01_28_923532 73 11 CC0 CC0 NNP 10_1101-2020_01_28_923532 73 12 license license NN 10_1101-2020_01_28_923532 73 13 . . . 10_1101-2020_01_28_923532 74 1 ( ( -LRB- 10_1101-2020_01_28_923532 74 2 which which WDT 10_1101-2020_01_28_923532 74 3 was be VBD 10_1101-2020_01_28_923532 74 4 not not RB 10_1101-2020_01_28_923532 74 5 certified certify VBN 10_1101-2020_01_28_923532 74 6 by by IN 10_1101-2020_01_28_923532 74 7 peer peer NN 10_1101-2020_01_28_923532 74 8 review review NN 10_1101-2020_01_28_923532 74 9 ) ) -RRB- 10_1101-2020_01_28_923532 74 10 is be VBZ 10_1101-2020_01_28_923532 74 11 the the DT 10_1101-2020_01_28_923532 74 12 author author NN 10_1101-2020_01_28_923532 74 13 / / SYM 10_1101-2020_01_28_923532 74 14 funder funder NN 10_1101-2020_01_28_923532 74 15 . . . 10_1101-2020_01_28_923532 75 1 This this DT 10_1101-2020_01_28_923532 75 2 article article NN 10_1101-2020_01_28_923532 75 3 is be VBZ 10_1101-2020_01_28_923532 75 4 a a DT 10_1101-2020_01_28_923532 75 5 US US NNP 10_1101-2020_01_28_923532 75 6 Government Government NNP 10_1101-2020_01_28_923532 75 7 work work NN 10_1101-2020_01_28_923532 75 8 . . . 10_1101-2020_01_28_923532 76 1 It -PRON- PRP 10_1101-2020_01_28_923532 76 2 is be VBZ 10_1101-2020_01_28_923532 76 3 not not RB 10_1101-2020_01_28_923532 76 4 subject subject JJ 10_1101-2020_01_28_923532 76 5 to to IN 10_1101-2020_01_28_923532 76 6 copyright copyright NN 10_1101-2020_01_28_923532 76 7 under under IN 10_1101-2020_01_28_923532 76 8 17 17 CD 10_1101-2020_01_28_923532 76 9 USC usc NN 10_1101-2020_01_28_923532 76 10 The the DT 10_1101-2020_01_28_923532 76 11 copyright copyright NN 10_1101-2020_01_28_923532 76 12 holder holder NN 10_1101-2020_01_28_923532 76 13 for for IN 10_1101-2020_01_28_923532 76 14 this this DT 10_1101-2020_01_28_923532 76 15 preprintthis preprintthis NN 10_1101-2020_01_28_923532 76 16 version version NN 10_1101-2020_01_28_923532 76 17 posted post VBD 10_1101-2020_01_28_923532 76 18 February February NNP 10_1101-2020_01_28_923532 76 19 12 12 CD 10_1101-2020_01_28_923532 76 20 , , , 10_1101-2020_01_28_923532 76 21 2021 2021 CD 10_1101-2020_01_28_923532 76 22 . . . 10_1101-2020_01_28_923532 76 23 ; ; : 10_1101-2020_01_28_923532 76 24 https://doi.org/10.1101/2020.01.28.923532doi https://doi.org/10.1101/2020.01.28.923532doi ADD 10_1101-2020_01_28_923532 76 25 : : : 10_1101-2020_01_28_923532 76 26 bioRxiv biorxiv VB 10_1101-2020_01_28_923532 76 27 preprint preprint NN 10_1101-2020_01_28_923532 76 28 https://doi.org/10.1101/2020.01.28.923532 https://doi.org/10.1101/2020.01.28.923532 UH 10_1101-2020_01_28_923532 76 29 7 7 CD 10_1101-2020_01_28_923532 76 30 Figure figure NN 10_1101-2020_01_28_923532 76 31 1 1 CD 10_1101-2020_01_28_923532 76 32 . . . 10_1101-2020_01_28_923532 77 1 Conceptual conceptual JJ 10_1101-2020_01_28_923532 77 2 schematic schematic JJ 10_1101-2020_01_28_923532 77 3 example example NN 10_1101-2020_01_28_923532 77 4 of of IN 10_1101-2020_01_28_923532 77 5 MadHitter MadHitter NNP 10_1101-2020_01_28_923532 77 6 analysis analysis NN 10_1101-2020_01_28_923532 77 7 of of IN 10_1101-2020_01_28_923532 77 8 single single JJ 10_1101-2020_01_28_923532 77 9 - - HYPH 10_1101-2020_01_28_923532 77 10 cell cell NN 10_1101-2020_01_28_923532 77 11 data datum NNS 10_1101-2020_01_28_923532 77 12 transcriptomics transcriptomic NNS 10_1101-2020_01_28_923532 77 13 from from IN 10_1101-2020_01_28_923532 77 14 three three CD 10_1101-2020_01_28_923532 77 15 cancer cancer NN 10_1101-2020_01_28_923532 77 16 patients patient NNS 10_1101-2020_01_28_923532 77 17 . . . 10_1101-2020_01_28_923532 78 1 ( ( -LRB- 10_1101-2020_01_28_923532 78 2 A a NN 10_1101-2020_01_28_923532 78 3 ) ) -RRB- 10_1101-2020_01_28_923532 78 4 A a DT 10_1101-2020_01_28_923532 78 5 cohort cohort NN 10_1101-2020_01_28_923532 78 6 of of IN 10_1101-2020_01_28_923532 78 7 patients patient NNS 10_1101-2020_01_28_923532 78 8 ( ( -LRB- 10_1101-2020_01_28_923532 78 9 three three CD 10_1101-2020_01_28_923532 78 10 in in IN 10_1101-2020_01_28_923532 78 11 this this DT 10_1101-2020_01_28_923532 78 12 example example NN 10_1101-2020_01_28_923532 78 13 ) ) -RRB- 10_1101-2020_01_28_923532 78 14 arrives arrive VBZ 10_1101-2020_01_28_923532 78 15 for for IN 10_1101-2020_01_28_923532 78 16 a a DT 10_1101-2020_01_28_923532 78 17 study study NN 10_1101-2020_01_28_923532 78 18 in in IN 10_1101-2020_01_28_923532 78 19 which which WDT 10_1101-2020_01_28_923532 78 20 single single JJ 10_1101-2020_01_28_923532 78 21 - - HYPH 10_1101-2020_01_28_923532 78 22 cell cell NN 10_1101-2020_01_28_923532 78 23 tumor tumor NN 10_1101-2020_01_28_923532 78 24 microenvironment microenvironment NN 10_1101-2020_01_28_923532 78 25 ( ( -LRB- 10_1101-2020_01_28_923532 78 26 TME TME NNP 10_1101-2020_01_28_923532 78 27 ) ) -RRB- 10_1101-2020_01_28_923532 78 28 transcriptomics transcriptomic NNS 10_1101-2020_01_28_923532 78 29 data datum NNS 10_1101-2020_01_28_923532 78 30 are be VBP 10_1101-2020_01_28_923532 78 31 collected collect VBN 10_1101-2020_01_28_923532 78 32 from from IN 10_1101-2020_01_28_923532 78 33 each each DT 10_1101-2020_01_28_923532 78 34 patient patient NN 10_1101-2020_01_28_923532 78 35 ; ; : 10_1101-2020_01_28_923532 78 36 the the DT 10_1101-2020_01_28_923532 78 37 data datum NNS 10_1101-2020_01_28_923532 78 38 are be VBP 10_1101-2020_01_28_923532 78 39 analyzed analyze VBN 10_1101-2020_01_28_923532 78 40 with with IN 10_1101-2020_01_28_923532 78 41 MadHitter MadHitter NNP 10_1101-2020_01_28_923532 78 42 and and CC 10_1101-2020_01_28_923532 78 43 each each DT 10_1101-2020_01_28_923532 78 44 patient patient NN 10_1101-2020_01_28_923532 78 45 receives receive VBZ 10_1101-2020_01_28_923532 78 46 an an DT 10_1101-2020_01_28_923532 78 47 optimal optimal JJ 10_1101-2020_01_28_923532 78 48 personalized personalize VBN 10_1101-2020_01_28_923532 78 49 combination combination NN 10_1101-2020_01_28_923532 78 50 of of IN 10_1101-2020_01_28_923532 78 51 targeted target VBN 10_1101-2020_01_28_923532 78 52 therapies therapy NNS 10_1101-2020_01_28_923532 78 53 from from IN 10_1101-2020_01_28_923532 78 54 a a DT 10_1101-2020_01_28_923532 78 55 pre- pre- RB 10_1101-2020_01_28_923532 78 56 specified specify VBN 10_1101-2020_01_28_923532 78 57 set set NN 10_1101-2020_01_28_923532 78 58 ( ( -LRB- 10_1101-2020_01_28_923532 78 59 pill pill NNP 10_1101-2020_01_28_923532 78 60 bottle bottle NNP 10_1101-2020_01_28_923532 78 61 ) ) -RRB- 10_1101-2020_01_28_923532 78 62 . . . 10_1101-2020_01_28_923532 79 1 MadHitter MadHitter NNP 10_1101-2020_01_28_923532 79 2 is be VBZ 10_1101-2020_01_28_923532 79 3 aimed aim VBN 10_1101-2020_01_28_923532 79 4 at at IN 10_1101-2020_01_28_923532 79 5 optimizing optimize VBG 10_1101-2020_01_28_923532 79 6 combinations combination NNS 10_1101-2020_01_28_923532 79 7 of of IN 10_1101-2020_01_28_923532 79 8 targeted target VBN 10_1101-2020_01_28_923532 79 9 therapies therapy NNS 10_1101-2020_01_28_923532 79 10 that that WDT 10_1101-2020_01_28_923532 79 11 are be VBP 10_1101-2020_01_28_923532 79 12 modular modular JJ 10_1101-2020_01_28_923532 79 13 , , , 10_1101-2020_01_28_923532 79 14 that that RB 10_1101-2020_01_28_923532 79 15 is is RB 10_1101-2020_01_28_923532 79 16 , , , 10_1101-2020_01_28_923532 79 17 having have VBG 10_1101-2020_01_28_923532 79 18 a a DT 10_1101-2020_01_28_923532 79 19 recognition recognition NN 10_1101-2020_01_28_923532 79 20 unit unit NN 10_1101-2020_01_28_923532 79 21 that that WDT 10_1101-2020_01_28_923532 79 22 is be VBZ 10_1101-2020_01_28_923532 79 23 gene gene NN 10_1101-2020_01_28_923532 79 24 / / SYM 10_1101-2020_01_28_923532 79 25 protein protein NN 10_1101-2020_01_28_923532 79 26 - - HYPH 10_1101-2020_01_28_923532 79 27 specific specific JJ 10_1101-2020_01_28_923532 79 28 , , , 10_1101-2020_01_28_923532 79 29 and and CC 10_1101-2020_01_28_923532 79 30 a a DT 10_1101-2020_01_28_923532 79 31 joint joint JJ 10_1101-2020_01_28_923532 79 32 killing killing NN 10_1101-2020_01_28_923532 79 33 subunit subunit NN 10_1101-2020_01_28_923532 79 34 ( ( -LRB- 10_1101-2020_01_28_923532 79 35 similar similar JJ 10_1101-2020_01_28_923532 79 36 for for IN 10_1101-2020_01_28_923532 79 37 all all DT 10_1101-2020_01_28_923532 79 38 gene gene NN 10_1101-2020_01_28_923532 79 39 targets target NNS 10_1101-2020_01_28_923532 79 40 ) ) -RRB- 10_1101-2020_01_28_923532 79 41 . . . 10_1101-2020_01_28_923532 80 1 Icons icon NNS 10_1101-2020_01_28_923532 80 2 of of IN 10_1101-2020_01_28_923532 80 3 four four CD 10_1101-2020_01_28_923532 80 4 such such JJ 10_1101-2020_01_28_923532 80 5 modular modular JJ 10_1101-2020_01_28_923532 80 6 therapies therapy NNS 10_1101-2020_01_28_923532 80 7 are be VBP 10_1101-2020_01_28_923532 80 8 shown show VBN 10_1101-2020_01_28_923532 80 9 ; ; : 10_1101-2020_01_28_923532 80 10 for for IN 10_1101-2020_01_28_923532 80 11 three three CD 10_1101-2020_01_28_923532 80 12 of of IN 10_1101-2020_01_28_923532 80 13 these these DT 10_1101-2020_01_28_923532 80 14 , , , 10_1101-2020_01_28_923532 80 15 the the DT 10_1101-2020_01_28_923532 80 16 target target NN 10_1101-2020_01_28_923532 80 17 protein protein NN 10_1101-2020_01_28_923532 80 18 must must MD 10_1101-2020_01_28_923532 80 19 be be VB 10_1101-2020_01_28_923532 80 20 on on IN 10_1101-2020_01_28_923532 80 21 the the DT 10_1101-2020_01_28_923532 80 22 cell cell NN 10_1101-2020_01_28_923532 80 23 surface surface NN 10_1101-2020_01_28_923532 80 24 and and CC 10_1101-2020_01_28_923532 80 25 for for IN 10_1101-2020_01_28_923532 80 26 two two CD 10_1101-2020_01_28_923532 80 27 it -PRON- PRP 10_1101-2020_01_28_923532 80 28 must must MD 10_1101-2020_01_28_923532 80 29 be be VB 10_1101-2020_01_28_923532 80 30 a a DT 10_1101-2020_01_28_923532 80 31 receptor receptor NN 10_1101-2020_01_28_923532 80 32 , , , 10_1101-2020_01_28_923532 80 33 so so CC 10_1101-2020_01_28_923532 80 34 we -PRON- PRP 10_1101-2020_01_28_923532 80 35 focus focus VBP 10_1101-2020_01_28_923532 80 36 our -PRON- PRP$ 10_1101-2020_01_28_923532 80 37 analyses analysis NNS 10_1101-2020_01_28_923532 80 38 on on IN 10_1101-2020_01_28_923532 80 39 cell cell NN 10_1101-2020_01_28_923532 80 40 surface surface NN 10_1101-2020_01_28_923532 80 41 receptors receptor NNS 10_1101-2020_01_28_923532 80 42 . . . 10_1101-2020_01_28_923532 81 1 Three three CD 10_1101-2020_01_28_923532 81 2 main main JJ 10_1101-2020_01_28_923532 81 3 algorithm algorithm NN 10_1101-2020_01_28_923532 81 4 parameters parameter NNS 10_1101-2020_01_28_923532 81 5 are be VBP 10_1101-2020_01_28_923532 81 6 denoted denote VBN 10_1101-2020_01_28_923532 81 7 near near IN 10_1101-2020_01_28_923532 81 8 the the DT 10_1101-2020_01_28_923532 81 9 MadHitter MadHitter NNP 10_1101-2020_01_28_923532 81 10 icon icon NN 10_1101-2020_01_28_923532 81 11 in in IN 10_1101-2020_01_28_923532 81 12 panel panel NN 10_1101-2020_01_28_923532 81 13 A A NNP 10_1101-2020_01_28_923532 81 14 and and CC 10_1101-2020_01_28_923532 81 15 explained explain VBD 10_1101-2020_01_28_923532 81 16 in in IN 10_1101-2020_01_28_923532 81 17 the the DT 10_1101-2020_01_28_923532 81 18 later later JJ 10_1101-2020_01_28_923532 81 19 panels panel NNS 10_1101-2020_01_28_923532 81 20 . . . 10_1101-2020_01_28_923532 82 1 ( ( -LRB- 10_1101-2020_01_28_923532 82 2 B b NN 10_1101-2020_01_28_923532 82 3 ) ) -RRB- 10_1101-2020_01_28_923532 82 4 The the DT 10_1101-2020_01_28_923532 82 5 105 105 CD 10_1101-2020_01_28_923532 82 6 and and CC 10_1101-2020_01_28_923532 82 7 is be VBZ 10_1101-2020_01_28_923532 82 8 also also RB 10_1101-2020_01_28_923532 82 9 made make VBN 10_1101-2020_01_28_923532 82 10 available available JJ 10_1101-2020_01_28_923532 82 11 for for IN 10_1101-2020_01_28_923532 82 12 use use NN 10_1101-2020_01_28_923532 82 13 under under IN 10_1101-2020_01_28_923532 82 14 a a DT 10_1101-2020_01_28_923532 82 15 CC0 CC0 NNP 10_1101-2020_01_28_923532 82 16 license license NN 10_1101-2020_01_28_923532 82 17 . . . 10_1101-2020_01_28_923532 83 1 ( ( -LRB- 10_1101-2020_01_28_923532 83 2 which which WDT 10_1101-2020_01_28_923532 83 3 was be VBD 10_1101-2020_01_28_923532 83 4 not not RB 10_1101-2020_01_28_923532 83 5 certified certify VBN 10_1101-2020_01_28_923532 83 6 by by IN 10_1101-2020_01_28_923532 83 7 peer peer NN 10_1101-2020_01_28_923532 83 8 review review NN 10_1101-2020_01_28_923532 83 9 ) ) -RRB- 10_1101-2020_01_28_923532 83 10 is be VBZ 10_1101-2020_01_28_923532 83 11 the the DT 10_1101-2020_01_28_923532 83 12 author author NN 10_1101-2020_01_28_923532 83 13 / / SYM 10_1101-2020_01_28_923532 83 14 funder funder NN 10_1101-2020_01_28_923532 83 15 . . . 10_1101-2020_01_28_923532 84 1 This this DT 10_1101-2020_01_28_923532 84 2 article article NN 10_1101-2020_01_28_923532 84 3 is be VBZ 10_1101-2020_01_28_923532 84 4 a a DT 10_1101-2020_01_28_923532 84 5 US US NNP 10_1101-2020_01_28_923532 84 6 Government Government NNP 10_1101-2020_01_28_923532 84 7 work work NN 10_1101-2020_01_28_923532 84 8 . . . 10_1101-2020_01_28_923532 85 1 It -PRON- PRP 10_1101-2020_01_28_923532 85 2 is be VBZ 10_1101-2020_01_28_923532 85 3 not not RB 10_1101-2020_01_28_923532 85 4 subject subject JJ 10_1101-2020_01_28_923532 85 5 to to IN 10_1101-2020_01_28_923532 85 6 copyright copyright NN 10_1101-2020_01_28_923532 85 7 under under IN 10_1101-2020_01_28_923532 85 8 17 17 CD 10_1101-2020_01_28_923532 85 9 USC usc NN 10_1101-2020_01_28_923532 85 10 The the DT 10_1101-2020_01_28_923532 85 11 copyright copyright NN 10_1101-2020_01_28_923532 85 12 holder holder NN 10_1101-2020_01_28_923532 85 13 for for IN 10_1101-2020_01_28_923532 85 14 this this DT 10_1101-2020_01_28_923532 85 15 preprintthis preprintthis NN 10_1101-2020_01_28_923532 85 16 version version NN 10_1101-2020_01_28_923532 85 17 posted post VBD 10_1101-2020_01_28_923532 85 18 February February NNP 10_1101-2020_01_28_923532 85 19 12 12 CD 10_1101-2020_01_28_923532 85 20 , , , 10_1101-2020_01_28_923532 85 21 2021 2021 CD 10_1101-2020_01_28_923532 85 22 . . . 10_1101-2020_01_28_923532 85 23 ; ; : 10_1101-2020_01_28_923532 85 24 https://doi.org/10.1101/2020.01.28.923532doi https://doi.org/10.1101/2020.01.28.923532doi ADD 10_1101-2020_01_28_923532 85 25 : : : 10_1101-2020_01_28_923532 85 26 bioRxiv biorxiv VB 10_1101-2020_01_28_923532 85 27 preprint preprint NN 10_1101-2020_01_28_923532 85 28 https://doi.org/10.1101/2020.01.28.923532 https://doi.org/10.1101/2020.01.28.923532 UH 10_1101-2020_01_28_923532 85 29 8 8 CD 10_1101-2020_01_28_923532 85 30 single single JJ 10_1101-2020_01_28_923532 85 31 - - HYPH 10_1101-2020_01_28_923532 85 32 cell cell NN 10_1101-2020_01_28_923532 85 33 TME TME NNP 10_1101-2020_01_28_923532 85 34 data datum NNS 10_1101-2020_01_28_923532 85 35 are be VBP 10_1101-2020_01_28_923532 85 36 represented represent VBN 10_1101-2020_01_28_923532 85 37 in in IN 10_1101-2020_01_28_923532 85 38 two two CD 10_1101-2020_01_28_923532 85 39 matrices matrix NNS 10_1101-2020_01_28_923532 85 40 with with IN 10_1101-2020_01_28_923532 85 41 the the DT 10_1101-2020_01_28_923532 85 42 genes gene NNS 10_1101-2020_01_28_923532 85 43 as as IN 10_1101-2020_01_28_923532 85 44 rows row NNS 10_1101-2020_01_28_923532 85 45 and and CC 10_1101-2020_01_28_923532 85 46 cells cell NNS 10_1101-2020_01_28_923532 85 47 as as IN 10_1101-2020_01_28_923532 85 48 columns column NNS 10_1101-2020_01_28_923532 85 49 , , , 10_1101-2020_01_28_923532 85 50 partitioned partition VBN 10_1101-2020_01_28_923532 85 51 into into IN 10_1101-2020_01_28_923532 85 52 tumor tumor NN 10_1101-2020_01_28_923532 85 53 ( ( -LRB- 10_1101-2020_01_28_923532 85 54 T t NN 10_1101-2020_01_28_923532 85 55 ) ) -RRB- 10_1101-2020_01_28_923532 85 56 and and CC 10_1101-2020_01_28_923532 85 57 non non JJ 10_1101-2020_01_28_923532 85 58 - - JJ 10_1101-2020_01_28_923532 85 59 tumor tumor JJ 10_1101-2020_01_28_923532 85 60 ( ( -LRB- 10_1101-2020_01_28_923532 85 61 N n NN 10_1101-2020_01_28_923532 85 62 ) ) -RRB- 10_1101-2020_01_28_923532 85 63 cells cell NNS 10_1101-2020_01_28_923532 85 64 . . . 10_1101-2020_01_28_923532 86 1 The the DT 10_1101-2020_01_28_923532 86 2 expression expression NN 10_1101-2020_01_28_923532 86 3 ratio ratio NN 10_1101-2020_01_28_923532 86 4 r r NN 10_1101-2020_01_28_923532 86 5 determines determine VBZ 10_1101-2020_01_28_923532 86 6 by by IN 10_1101-2020_01_28_923532 86 7 how how WRB 10_1101-2020_01_28_923532 86 8 much much JJ 10_1101-2020_01_28_923532 86 9 a a DT 10_1101-2020_01_28_923532 86 10 gene gene NN 10_1101-2020_01_28_923532 86 11 must must MD 10_1101-2020_01_28_923532 86 12 be be VB 10_1101-2020_01_28_923532 86 13 overexpressed overexpresse VBN 10_1101-2020_01_28_923532 86 14 for for IN 10_1101-2020_01_28_923532 86 15 a a DT 10_1101-2020_01_28_923532 86 16 cell cell NN 10_1101-2020_01_28_923532 86 17 to to TO 10_1101-2020_01_28_923532 86 18 be be VB 10_1101-2020_01_28_923532 86 19 considered consider VBN 10_1101-2020_01_28_923532 86 20 as as IN 10_1101-2020_01_28_923532 86 21 a a DT 10_1101-2020_01_28_923532 86 22 targeted target VBN 10_1101-2020_01_28_923532 86 23 . . . 10_1101-2020_01_28_923532 87 1 A a DT 10_1101-2020_01_28_923532 87 2 gene gene NN 10_1101-2020_01_28_923532 87 3 is be VBZ 10_1101-2020_01_28_923532 87 4 considered consider VBN 10_1101-2020_01_28_923532 87 5 ‘ ' `` 10_1101-2020_01_28_923532 87 6 overexpressed overexpresse VBN 10_1101-2020_01_28_923532 87 7 ’ ' '' 10_1101-2020_01_28_923532 87 8 in in IN 10_1101-2020_01_28_923532 87 9 either either CC 10_1101-2020_01_28_923532 87 10 a a DT 10_1101-2020_01_28_923532 87 11 non- non- NN 10_1101-2020_01_28_923532 87 12 tumor tumor NN 10_1101-2020_01_28_923532 87 13 cell cell NN 10_1101-2020_01_28_923532 87 14 or or CC 10_1101-2020_01_28_923532 87 15 a a DT 10_1101-2020_01_28_923532 87 16 tumor tumor NN 10_1101-2020_01_28_923532 87 17 cell cell NN 10_1101-2020_01_28_923532 87 18 if if IN 10_1101-2020_01_28_923532 87 19 its -PRON- PRP$ 10_1101-2020_01_28_923532 87 20 expression expression NN 10_1101-2020_01_28_923532 87 21 is be VBZ 10_1101-2020_01_28_923532 87 22 at at IN 10_1101-2020_01_28_923532 87 23 least least JJS 10_1101-2020_01_28_923532 87 24 r r NN 10_1101-2020_01_28_923532 87 25 times time NNS 10_1101-2020_01_28_923532 87 26 the the DT 10_1101-2020_01_28_923532 87 27 mean mean NN 10_1101-2020_01_28_923532 87 28 , , , 10_1101-2020_01_28_923532 87 29 reference reference NN 10_1101-2020_01_28_923532 87 30 level level NN 10_1101-2020_01_28_923532 87 31 ; ; : 10_1101-2020_01_28_923532 87 32 e.g e.g NNP 10_1101-2020_01_28_923532 87 33 , , , 10_1101-2020_01_28_923532 87 34 the the DT 10_1101-2020_01_28_923532 87 35 reference reference NN 10_1101-2020_01_28_923532 87 36 level level NN 10_1101-2020_01_28_923532 87 37 for for IN 10_1101-2020_01_28_923532 87 38 FLT1 FLT1 NNP 10_1101-2020_01_28_923532 87 39 is be VBZ 10_1101-2020_01_28_923532 87 40 ( ( -LRB- 10_1101-2020_01_28_923532 87 41 7 7 CD 10_1101-2020_01_28_923532 87 42 + + SYM 10_1101-2020_01_28_923532 87 43 11 11 CD 10_1101-2020_01_28_923532 87 44 + + SYM 10_1101-2020_01_28_923532 87 45 9)/3 9)/3 CD 10_1101-2020_01_28_923532 87 46 = = SYM 10_1101-2020_01_28_923532 87 47 9 9 CD 10_1101-2020_01_28_923532 87 48 and and CC 10_1101-2020_01_28_923532 87 49 only only JJ 10_1101-2020_01_28_923532 87 50 cell cell NN 10_1101-2020_01_28_923532 87 51 T3 t3 NN 10_1101-2020_01_28_923532 87 52 has have VBZ 10_1101-2020_01_28_923532 87 53 FLT1 FLT1 NNP 10_1101-2020_01_28_923532 87 54 expression expression NN 10_1101-2020_01_28_923532 87 55 above above IN 10_1101-2020_01_28_923532 87 56 9×2 9×2 CD 10_1101-2020_01_28_923532 87 57 = = SYM 10_1101-2020_01_28_923532 87 58 18 18 CD 10_1101-2020_01_28_923532 87 59 . . . 10_1101-2020_01_28_923532 88 1 The the DT 10_1101-2020_01_28_923532 88 2 matrices matrix NNS 10_1101-2020_01_28_923532 88 3 on on IN 10_1101-2020_01_28_923532 88 4 the the DT 10_1101-2020_01_28_923532 88 5 right right JJ 10_1101-2020_01_28_923532 88 6 side side NN 10_1101-2020_01_28_923532 88 7 show show VBP 10_1101-2020_01_28_923532 88 8 a a DT 10_1101-2020_01_28_923532 88 9 Boolean boolean JJ 10_1101-2020_01_28_923532 88 10 representation representation NN 10_1101-2020_01_28_923532 88 11 of of IN 10_1101-2020_01_28_923532 88 12 which which WDT 10_1101-2020_01_28_923532 88 13 targets target NNS 10_1101-2020_01_28_923532 88 14 kill kill VB 10_1101-2020_01_28_923532 88 15 which which WDT 10_1101-2020_01_28_923532 88 16 cells cell NNS 10_1101-2020_01_28_923532 88 17 , , , 10_1101-2020_01_28_923532 88 18 based base VBN 10_1101-2020_01_28_923532 88 19 on on IN 10_1101-2020_01_28_923532 88 20 the the DT 10_1101-2020_01_28_923532 88 21 expression expression NN 10_1101-2020_01_28_923532 88 22 values value NNS 10_1101-2020_01_28_923532 88 23 presented present VBN 10_1101-2020_01_28_923532 88 24 in in IN 10_1101-2020_01_28_923532 88 25 this this DT 10_1101-2020_01_28_923532 88 26 toy toy NN 10_1101-2020_01_28_923532 88 27 problem problem NN 10_1101-2020_01_28_923532 88 28 in in IN 10_1101-2020_01_28_923532 88 29 matrix matrix NN 10_1101-2020_01_28_923532 88 30 B b NN 10_1101-2020_01_28_923532 88 31 and and CC 10_1101-2020_01_28_923532 88 32 taking take VBG 10_1101-2020_01_28_923532 88 33 r=2 r=2 NN 10_1101-2020_01_28_923532 88 34 . . . 10_1101-2020_01_28_923532 89 1 Accordingly accordingly RB 10_1101-2020_01_28_923532 89 2 , , , 10_1101-2020_01_28_923532 89 3 the the DT 10_1101-2020_01_28_923532 89 4 combination combination NN 10_1101-2020_01_28_923532 89 5 of of IN 10_1101-2020_01_28_923532 89 6 EGFR EGFR NNP 10_1101-2020_01_28_923532 89 7 and and CC 10_1101-2020_01_28_923532 89 8 KDR KDR NNP 10_1101-2020_01_28_923532 89 9 would would MD 10_1101-2020_01_28_923532 89 10 kill kill VB 10_1101-2020_01_28_923532 89 11 all all DT 10_1101-2020_01_28_923532 89 12 tumor tumor NN 10_1101-2020_01_28_923532 89 13 cells cell NNS 10_1101-2020_01_28_923532 89 14 and and CC 10_1101-2020_01_28_923532 89 15 would would MD 10_1101-2020_01_28_923532 89 16 spare spare VB 10_1101-2020_01_28_923532 89 17 all all DT 10_1101-2020_01_28_923532 89 18 non non JJ 10_1101-2020_01_28_923532 89 19 - - JJ 10_1101-2020_01_28_923532 89 20 tumor tumor JJ 10_1101-2020_01_28_923532 89 21 cells cell NNS 10_1101-2020_01_28_923532 89 22 . . . 10_1101-2020_01_28_923532 90 1 ( ( -LRB- 10_1101-2020_01_28_923532 90 2 C C NNP 10_1101-2020_01_28_923532 90 3 ) ) -RRB- 10_1101-2020_01_28_923532 90 4 The the DT 10_1101-2020_01_28_923532 90 5 main main JJ 10_1101-2020_01_28_923532 90 6 algorithm algorithm NN 10_1101-2020_01_28_923532 90 7 in in IN 10_1101-2020_01_28_923532 90 8 MadHitter MadHitter NNP 10_1101-2020_01_28_923532 90 9 seeks seek VBZ 10_1101-2020_01_28_923532 90 10 a a DT 10_1101-2020_01_28_923532 90 11 combination combination NN 10_1101-2020_01_28_923532 90 12 of of IN 10_1101-2020_01_28_923532 90 13 targets target NNS 10_1101-2020_01_28_923532 90 14 that that WDT 10_1101-2020_01_28_923532 90 15 is be VBZ 10_1101-2020_01_28_923532 90 16 as as RB 10_1101-2020_01_28_923532 90 17 small small JJ 10_1101-2020_01_28_923532 90 18 as as IN 10_1101-2020_01_28_923532 90 19 possible possible JJ 10_1101-2020_01_28_923532 90 20 and and CC 10_1101-2020_01_28_923532 90 21 would would MD 10_1101-2020_01_28_923532 90 22 kill kill VB 10_1101-2020_01_28_923532 90 23 many many JJ 10_1101-2020_01_28_923532 90 24 tumor tumor NN 10_1101-2020_01_28_923532 90 25 cells cell NNS 10_1101-2020_01_28_923532 90 26 and and CC 10_1101-2020_01_28_923532 90 27 few few JJ 10_1101-2020_01_28_923532 90 28 non non JJ 10_1101-2020_01_28_923532 90 29 - - JJ 10_1101-2020_01_28_923532 90 30 tumor tumor JJ 10_1101-2020_01_28_923532 90 31 cells cell NNS 10_1101-2020_01_28_923532 90 32 , , , 10_1101-2020_01_28_923532 90 33 in in IN 10_1101-2020_01_28_923532 90 34 a a DT 10_1101-2020_01_28_923532 90 35 patient- patient- JJ 10_1101-2020_01_28_923532 90 36 specific specific JJ 10_1101-2020_01_28_923532 90 37 manner manner NN 10_1101-2020_01_28_923532 90 38 . . . 10_1101-2020_01_28_923532 91 1 The the DT 10_1101-2020_01_28_923532 91 2 𝑙𝑏 𝑙𝑏 NN 10_1101-2020_01_28_923532 91 3 and and CC 10_1101-2020_01_28_923532 91 4 𝑢𝑏 𝑢𝑏 NNP 10_1101-2020_01_28_923532 91 5 parameters parameter NNS 10_1101-2020_01_28_923532 91 6 are be VBP 10_1101-2020_01_28_923532 91 7 the the DT 10_1101-2020_01_28_923532 91 8 lower low JJR 10_1101-2020_01_28_923532 91 9 bound bind VBN 10_1101-2020_01_28_923532 91 10 on on IN 10_1101-2020_01_28_923532 91 11 the the DT 10_1101-2020_01_28_923532 91 12 fraction fraction NN 10_1101-2020_01_28_923532 91 13 of of IN 10_1101-2020_01_28_923532 91 14 tumor tumor NN 10_1101-2020_01_28_923532 91 15 cells cell NNS 10_1101-2020_01_28_923532 91 16 killed kill VBN 10_1101-2020_01_28_923532 91 17 and and CC 10_1101-2020_01_28_923532 91 18 the the DT 10_1101-2020_01_28_923532 91 19 upper upper JJ 10_1101-2020_01_28_923532 91 20 bound bind VBN 10_1101-2020_01_28_923532 91 21 on on IN 10_1101-2020_01_28_923532 91 22 the the DT 10_1101-2020_01_28_923532 91 23 fraction fraction NN 10_1101-2020_01_28_923532 91 24 of of IN 10_1101-2020_01_28_923532 91 25 non non JJ 10_1101-2020_01_28_923532 91 26 - - JJ 10_1101-2020_01_28_923532 91 27 tumor tumor JJ 10_1101-2020_01_28_923532 91 28 cells cell NNS 10_1101-2020_01_28_923532 91 29 whose whose WP$ 10_1101-2020_01_28_923532 91 30 killing killing NN 10_1101-2020_01_28_923532 91 31 is be VBZ 10_1101-2020_01_28_923532 91 32 tolerated tolerate VBN 10_1101-2020_01_28_923532 91 33 , , , 10_1101-2020_01_28_923532 91 34 respectively respectively RB 10_1101-2020_01_28_923532 91 35 . . . 10_1101-2020_01_28_923532 92 1 Baseline baseline JJ 10_1101-2020_01_28_923532 92 2 settings setting NNS 10_1101-2020_01_28_923532 92 3 used use VBN 10_1101-2020_01_28_923532 92 4 in in IN 10_1101-2020_01_28_923532 92 5 our -PRON- PRP$ 10_1101-2020_01_28_923532 92 6 analyses analysis NNS 10_1101-2020_01_28_923532 92 7 are be VBP 10_1101-2020_01_28_923532 92 8 𝑟 𝑟 NNP 10_1101-2020_01_28_923532 92 9 = = SYM 10_1101-2020_01_28_923532 92 10 2 2 CD 10_1101-2020_01_28_923532 92 11 , , , 10_1101-2020_01_28_923532 92 12 𝑙𝑏 𝑙𝑏 NN 10_1101-2020_01_28_923532 92 13 = = SYM 10_1101-2020_01_28_923532 92 14 0.8 0.8 CD 10_1101-2020_01_28_923532 92 15 and and CC 10_1101-2020_01_28_923532 92 16 𝑢𝑏 𝑢𝑏 NNP 10_1101-2020_01_28_923532 92 17 = = SYM 10_1101-2020_01_28_923532 92 18 0.1 0.1 CD 10_1101-2020_01_28_923532 92 19 , , , 10_1101-2020_01_28_923532 92 20 and and CC 10_1101-2020_01_28_923532 92 21 are be VBP 10_1101-2020_01_28_923532 92 22 varied varied JJ 10_1101-2020_01_28_923532 92 23 in in IN 10_1101-2020_01_28_923532 92 24 some some DT 10_1101-2020_01_28_923532 92 25 of of IN 10_1101-2020_01_28_923532 92 26 the the DT 10_1101-2020_01_28_923532 92 27 analyses analysis NNS 10_1101-2020_01_28_923532 92 28 . . . 10_1101-2020_01_28_923532 93 1 The the DT 10_1101-2020_01_28_923532 93 2 right right JJ 10_1101-2020_01_28_923532 93 3 side side NN 10_1101-2020_01_28_923532 93 4 of of IN 10_1101-2020_01_28_923532 93 5 the the DT 10_1101-2020_01_28_923532 93 6 panel panel NN 10_1101-2020_01_28_923532 93 7 shows show VBZ 10_1101-2020_01_28_923532 93 8 a a DT 10_1101-2020_01_28_923532 93 9 hypothetical hypothetical JJ 10_1101-2020_01_28_923532 93 10 example example NN 10_1101-2020_01_28_923532 93 11 of of IN 10_1101-2020_01_28_923532 93 12 the the DT 10_1101-2020_01_28_923532 93 13 tradeoff tradeoff NN 10_1101-2020_01_28_923532 93 14 between between IN 10_1101-2020_01_28_923532 93 15 killing kill VBG 10_1101-2020_01_28_923532 93 16 tumor tumor NN 10_1101-2020_01_28_923532 93 17 cells cell NNS 10_1101-2020_01_28_923532 93 18 and and CC 10_1101-2020_01_28_923532 93 19 sparing spare VBG 10_1101-2020_01_28_923532 93 20 non non JJ 10_1101-2020_01_28_923532 93 21 - - JJ 10_1101-2020_01_28_923532 93 22 tumor tumor JJ 10_1101-2020_01_28_923532 93 23 cells cell NNS 10_1101-2020_01_28_923532 93 24 . . . 10_1101-2020_01_28_923532 94 1 While while IN 10_1101-2020_01_28_923532 94 2 target target NN 10_1101-2020_01_28_923532 94 3 set set VBN 10_1101-2020_01_28_923532 94 4 A a NN 10_1101-2020_01_28_923532 94 5 could could MD 10_1101-2020_01_28_923532 94 6 kill kill VB 10_1101-2020_01_28_923532 94 7 a a DT 10_1101-2020_01_28_923532 94 8 larger large JJR 10_1101-2020_01_28_923532 94 9 fraction fraction NN 10_1101-2020_01_28_923532 94 10 of of IN 10_1101-2020_01_28_923532 94 11 tumor tumor NN 10_1101-2020_01_28_923532 94 12 cells cell NNS 10_1101-2020_01_28_923532 94 13 than than IN 10_1101-2020_01_28_923532 94 14 target target VB 10_1101-2020_01_28_923532 94 15 set set VBN 10_1101-2020_01_28_923532 94 16 B b NN 10_1101-2020_01_28_923532 94 17 , , , 10_1101-2020_01_28_923532 94 18 MadHitter MadHitter NNP 10_1101-2020_01_28_923532 94 19 would would MD 10_1101-2020_01_28_923532 94 20 select select VB 10_1101-2020_01_28_923532 94 21 target target NN 10_1101-2020_01_28_923532 94 22 set set VBN 10_1101-2020_01_28_923532 94 23 B b NN 10_1101-2020_01_28_923532 94 24 since since IN 10_1101-2020_01_28_923532 94 25 only only RB 10_1101-2020_01_28_923532 94 26 it -PRON- PRP 10_1101-2020_01_28_923532 94 27 satisfies satisfy VBZ 10_1101-2020_01_28_923532 94 28 both both CC 10_1101-2020_01_28_923532 94 29 our -PRON- PRP$ 10_1101-2020_01_28_923532 94 30 baseline baseline JJ 10_1101-2020_01_28_923532 94 31 settings setting NNS 10_1101-2020_01_28_923532 94 32 and and CC 10_1101-2020_01_28_923532 94 33 kills kill NNS 10_1101-2020_01_28_923532 94 34 at at IN 10_1101-2020_01_28_923532 94 35 most most JJS 10_1101-2020_01_28_923532 94 36 0.1 0.1 CD 10_1101-2020_01_28_923532 94 37 fraction fraction NN 10_1101-2020_01_28_923532 94 38 of of IN 10_1101-2020_01_28_923532 94 39 the the DT 10_1101-2020_01_28_923532 94 40 non non JJ 10_1101-2020_01_28_923532 94 41 - - JJ 10_1101-2020_01_28_923532 94 42 tumor tumor JJ 10_1101-2020_01_28_923532 94 43 cells cell NNS 10_1101-2020_01_28_923532 94 44 . . . 10_1101-2020_01_28_923532 95 1 105 105 CD 10_1101-2020_01_28_923532 95 2 and and CC 10_1101-2020_01_28_923532 95 3 is be VBZ 10_1101-2020_01_28_923532 95 4 also also RB 10_1101-2020_01_28_923532 95 5 made make VBN 10_1101-2020_01_28_923532 95 6 available available JJ 10_1101-2020_01_28_923532 95 7 for for IN 10_1101-2020_01_28_923532 95 8 use use NN 10_1101-2020_01_28_923532 95 9 under under IN 10_1101-2020_01_28_923532 95 10 a a DT 10_1101-2020_01_28_923532 95 11 CC0 CC0 NNP 10_1101-2020_01_28_923532 95 12 license license NN 10_1101-2020_01_28_923532 95 13 . . . 10_1101-2020_01_28_923532 96 1 ( ( -LRB- 10_1101-2020_01_28_923532 96 2 which which WDT 10_1101-2020_01_28_923532 96 3 was be VBD 10_1101-2020_01_28_923532 96 4 not not RB 10_1101-2020_01_28_923532 96 5 certified certify VBN 10_1101-2020_01_28_923532 96 6 by by IN 10_1101-2020_01_28_923532 96 7 peer peer NN 10_1101-2020_01_28_923532 96 8 review review NN 10_1101-2020_01_28_923532 96 9 ) ) -RRB- 10_1101-2020_01_28_923532 96 10 is be VBZ 10_1101-2020_01_28_923532 96 11 the the DT 10_1101-2020_01_28_923532 96 12 author author NN 10_1101-2020_01_28_923532 96 13 / / SYM 10_1101-2020_01_28_923532 96 14 funder funder NN 10_1101-2020_01_28_923532 96 15 . . . 10_1101-2020_01_28_923532 97 1 This this DT 10_1101-2020_01_28_923532 97 2 article article NN 10_1101-2020_01_28_923532 97 3 is be VBZ 10_1101-2020_01_28_923532 97 4 a a DT 10_1101-2020_01_28_923532 97 5 US US NNP 10_1101-2020_01_28_923532 97 6 Government Government NNP 10_1101-2020_01_28_923532 97 7 work work NN 10_1101-2020_01_28_923532 97 8 . . . 10_1101-2020_01_28_923532 98 1 It -PRON- PRP 10_1101-2020_01_28_923532 98 2 is be VBZ 10_1101-2020_01_28_923532 98 3 not not RB 10_1101-2020_01_28_923532 98 4 subject subject JJ 10_1101-2020_01_28_923532 98 5 to to IN 10_1101-2020_01_28_923532 98 6 copyright copyright NN 10_1101-2020_01_28_923532 98 7 under under IN 10_1101-2020_01_28_923532 98 8 17 17 CD 10_1101-2020_01_28_923532 98 9 USC usc NN 10_1101-2020_01_28_923532 98 10 The the DT 10_1101-2020_01_28_923532 98 11 copyright copyright NN 10_1101-2020_01_28_923532 98 12 holder holder NN 10_1101-2020_01_28_923532 98 13 for for IN 10_1101-2020_01_28_923532 98 14 this this DT 10_1101-2020_01_28_923532 98 15 preprintthis preprintthis NN 10_1101-2020_01_28_923532 98 16 version version NN 10_1101-2020_01_28_923532 98 17 posted post VBD 10_1101-2020_01_28_923532 98 18 February February NNP 10_1101-2020_01_28_923532 98 19 12 12 CD 10_1101-2020_01_28_923532 98 20 , , , 10_1101-2020_01_28_923532 98 21 2021 2021 CD 10_1101-2020_01_28_923532 98 22 . . . 10_1101-2020_01_28_923532 98 23 ; ; : 10_1101-2020_01_28_923532 98 24 https://doi.org/10.1101/2020.01.28.923532doi https://doi.org/10.1101/2020.01.28.923532doi ADD 10_1101-2020_01_28_923532 98 25 : : : 10_1101-2020_01_28_923532 98 26 bioRxiv biorxiv VB 10_1101-2020_01_28_923532 98 27 preprint preprint NN 10_1101-2020_01_28_923532 98 28 https://doi.org/10.1101/2020.01.28.923532 https://doi.org/10.1101/2020.01.28.923532 UH 10_1101-2020_01_28_923532 98 29 9 9 CD 10_1101-2020_01_28_923532 98 30 Results result NNS 10_1101-2020_01_28_923532 98 31 The the DT 10_1101-2020_01_28_923532 98 32 Data Data NNPS 10_1101-2020_01_28_923532 98 33 and and CC 10_1101-2020_01_28_923532 98 34 the the DT 10_1101-2020_01_28_923532 98 35 Combinatorial Combinatorial NNP 10_1101-2020_01_28_923532 98 36 Optimization Optimization NNP 10_1101-2020_01_28_923532 98 37 Framework Framework NNP 10_1101-2020_01_28_923532 98 38 We -PRON- PRP 10_1101-2020_01_28_923532 98 39 focused focus VBD 10_1101-2020_01_28_923532 98 40 our -PRON- PRP$ 10_1101-2020_01_28_923532 98 41 analysis analysis NN 10_1101-2020_01_28_923532 98 42 searching search VBG 10_1101-2020_01_28_923532 98 43 for for IN 10_1101-2020_01_28_923532 98 44 optimal optimal JJ 10_1101-2020_01_28_923532 98 45 treatment treatment NN 10_1101-2020_01_28_923532 98 46 combinations combination NNS 10_1101-2020_01_28_923532 98 47 in in IN 10_1101-2020_01_28_923532 98 48 nine nine CD 10_1101-2020_01_28_923532 98 49 single single JJ 10_1101-2020_01_28_923532 98 50 - - HYPH 10_1101-2020_01_28_923532 98 51 cell cell NN 10_1101-2020_01_28_923532 98 52 RNAseq RNAseq NNP 10_1101-2020_01_28_923532 98 53 data datum NNS 10_1101-2020_01_28_923532 98 54 sets set NNS 10_1101-2020_01_28_923532 98 55 that that WDT 10_1101-2020_01_28_923532 98 56 include include VBP 10_1101-2020_01_28_923532 98 57 tumor tumor NN 10_1101-2020_01_28_923532 98 58 cells cell NNS 10_1101-2020_01_28_923532 98 59 and and CC 10_1101-2020_01_28_923532 98 60 non non JJ 10_1101-2020_01_28_923532 98 61 - - JJ 10_1101-2020_01_28_923532 98 62 tumor tumor JJ 10_1101-2020_01_28_923532 98 63 cells cell NNS 10_1101-2020_01_28_923532 98 64 from from IN 10_1101-2020_01_28_923532 98 65 at at RB 10_1101-2020_01_28_923532 98 66 least least RBS 10_1101-2020_01_28_923532 98 67 three three CD 10_1101-2020_01_28_923532 98 68 patients patient NNS 10_1101-2020_01_28_923532 98 69 for for IN 10_1101-2020_01_28_923532 98 70 that that DT 10_1101-2020_01_28_923532 98 71 were be VBD 10_1101-2020_01_28_923532 98 72 publicly publicly RB 10_1101-2020_01_28_923532 98 73 available available JJ 10_1101-2020_01_28_923532 98 74 at at IN 10_1101-2020_01_28_923532 98 75 the the DT 10_1101-2020_01_28_923532 98 76 onset onset NN 10_1101-2020_01_28_923532 98 77 of of IN 10_1101-2020_01_28_923532 98 78 our -PRON- PRP$ 10_1101-2020_01_28_923532 98 79 investigation investigation NN 10_1101-2020_01_28_923532 98 80 ( ( -LRB- 10_1101-2020_01_28_923532 98 81 Methods method NNS 10_1101-2020_01_28_923532 98 82 ; ; , 10_1101-2020_01_28_923532 98 83 Table table NN 10_1101-2020_01_28_923532 98 84 1 1 CD 10_1101-2020_01_28_923532 98 85 ) ) -RRB- 10_1101-2020_01_28_923532 98 86 . . . 10_1101-2020_01_28_923532 99 1 Those those DT 10_1101-2020_01_28_923532 99 2 data data NN 10_1101-2020_01_28_923532 99 3 sets set NNS 10_1101-2020_01_28_923532 99 4 include include VBP 10_1101-2020_01_28_923532 99 5 four four CD 10_1101-2020_01_28_923532 99 6 brain brain NN 10_1101-2020_01_28_923532 99 7 cancer cancer NN 10_1101-2020_01_28_923532 99 8 data datum NNS 10_1101-2020_01_28_923532 99 9 sets set NNS 10_1101-2020_01_28_923532 99 10 and and CC 10_1101-2020_01_28_923532 99 11 one one CD 10_1101-2020_01_28_923532 99 12 each each DT 10_1101-2020_01_28_923532 99 13 from from IN 10_1101-2020_01_28_923532 99 14 head head NN 10_1101-2020_01_28_923532 99 15 and and CC 10_1101-2020_01_28_923532 99 16 neck neck NN 10_1101-2020_01_28_923532 99 17 , , , 10_1101-2020_01_28_923532 99 18 melanoma melanoma NNP 10_1101-2020_01_28_923532 99 19 , , , 10_1101-2020_01_28_923532 99 20 lung lung NN 10_1101-2020_01_28_923532 99 21 , , , 10_1101-2020_01_28_923532 99 22 breast breast NN 10_1101-2020_01_28_923532 99 23 and and CC 10_1101-2020_01_28_923532 99 24 colon colon NN 10_1101-2020_01_28_923532 99 25 cancers cancer NNS 10_1101-2020_01_28_923532 99 26 . . . 10_1101-2020_01_28_923532 100 1 Most Most JJS 10_1101-2020_01_28_923532 100 2 analyses analysis NNS 10_1101-2020_01_28_923532 100 3 were be VBD 10_1101-2020_01_28_923532 100 4 done do VBN 10_1101-2020_01_28_923532 100 5 for for IN 10_1101-2020_01_28_923532 100 6 all all DT 10_1101-2020_01_28_923532 100 7 data data NN 10_1101-2020_01_28_923532 100 8 sets set NNS 10_1101-2020_01_28_923532 100 9 , , , 10_1101-2020_01_28_923532 100 10 but but CC 10_1101-2020_01_28_923532 100 11 for for IN 10_1101-2020_01_28_923532 100 12 clarity clarity NN 10_1101-2020_01_28_923532 100 13 of of IN 10_1101-2020_01_28_923532 100 14 exposition exposition NN 10_1101-2020_01_28_923532 100 15 , , , 10_1101-2020_01_28_923532 100 16 we -PRON- PRP 10_1101-2020_01_28_923532 100 17 focused focus VBD 10_1101-2020_01_28_923532 100 18 in in IN 10_1101-2020_01_28_923532 100 19 the the DT 10_1101-2020_01_28_923532 100 20 main main JJ 10_1101-2020_01_28_923532 100 21 text text NN 10_1101-2020_01_28_923532 100 22 analyses analyse VBZ 10_1101-2020_01_28_923532 100 23 on on IN 10_1101-2020_01_28_923532 100 24 four four CD 10_1101-2020_01_28_923532 100 25 data data NN 10_1101-2020_01_28_923532 100 26 sets set NNS 10_1101-2020_01_28_923532 100 27 from from IN 10_1101-2020_01_28_923532 100 28 four four CD 10_1101-2020_01_28_923532 100 29 different different JJ 10_1101-2020_01_28_923532 100 30 cancer cancer NN 10_1101-2020_01_28_923532 100 31 types type NNS 10_1101-2020_01_28_923532 100 32 ( ( -LRB- 10_1101-2020_01_28_923532 100 33 brain brain NN 10_1101-2020_01_28_923532 100 34 , , , 10_1101-2020_01_28_923532 100 35 head head NN 10_1101-2020_01_28_923532 100 36 and and CC 10_1101-2020_01_28_923532 100 37 neck neck NN 10_1101-2020_01_28_923532 100 38 , , , 10_1101-2020_01_28_923532 100 39 melanoma melanoma NNP 10_1101-2020_01_28_923532 100 40 , , , 10_1101-2020_01_28_923532 100 41 lung lung NN 10_1101-2020_01_28_923532 100 42 ) ) -RRB- 10_1101-2020_01_28_923532 100 43 that that WDT 10_1101-2020_01_28_923532 100 44 are be VBP 10_1101-2020_01_28_923532 100 45 larger large JJR 10_1101-2020_01_28_923532 100 46 than than IN 10_1101-2020_01_28_923532 100 47 the the DT 10_1101-2020_01_28_923532 100 48 other other JJ 10_1101-2020_01_28_923532 100 49 five five CD 10_1101-2020_01_28_923532 100 50 and and CC 10_1101-2020_01_28_923532 100 51 hence hence RB 10_1101-2020_01_28_923532 100 52 , , , 10_1101-2020_01_28_923532 100 53 make make VB 10_1101-2020_01_28_923532 100 54 the the DT 10_1101-2020_01_28_923532 100 55 optimization optimization NN 10_1101-2020_01_28_923532 100 56 problems problem NNS 10_1101-2020_01_28_923532 100 57 more more RBR 10_1101-2020_01_28_923532 100 58 challenging challenging JJ 10_1101-2020_01_28_923532 100 59 . . . 10_1101-2020_01_28_923532 101 1 Results result NNS 10_1101-2020_01_28_923532 101 2 on on IN 10_1101-2020_01_28_923532 101 3 the the DT 10_1101-2020_01_28_923532 101 4 other other JJ 10_1101-2020_01_28_923532 101 5 five five CD 10_1101-2020_01_28_923532 101 6 data datum NNS 10_1101-2020_01_28_923532 101 7 sets set NNS 10_1101-2020_01_28_923532 101 8 are be VBP 10_1101-2020_01_28_923532 101 9 provided provide VBN 10_1101-2020_01_28_923532 101 10 in in IN 10_1101-2020_01_28_923532 101 11 Supplementary Supplementary NNP 10_1101-2020_01_28_923532 101 12 Materials Materials NNP 10_1101-2020_01_28_923532 101 13 2 2 CD 10_1101-2020_01_28_923532 101 14 . . . 10_1101-2020_01_28_923532 102 1 Analyzing analyze VBG 10_1101-2020_01_28_923532 102 2 separately separately RB 10_1101-2020_01_28_923532 102 3 each each DT 10_1101-2020_01_28_923532 102 4 of of IN 10_1101-2020_01_28_923532 102 5 these these DT 10_1101-2020_01_28_923532 102 6 data data NN 10_1101-2020_01_28_923532 102 7 sets set NNS 10_1101-2020_01_28_923532 102 8 , , , 10_1101-2020_01_28_923532 102 9 we -PRON- PRP 10_1101-2020_01_28_923532 102 10 ask ask VBP 10_1101-2020_01_28_923532 102 11 how how WRB 10_1101-2020_01_28_923532 102 12 many many JJ 10_1101-2020_01_28_923532 102 13 targets target NNS 10_1101-2020_01_28_923532 102 14 are be VBP 10_1101-2020_01_28_923532 102 15 needed need VBN 10_1101-2020_01_28_923532 102 16 to to TO 10_1101-2020_01_28_923532 102 17 kill kill VB 10_1101-2020_01_28_923532 102 18 most most JJS 10_1101-2020_01_28_923532 102 19 cells cell NNS 10_1101-2020_01_28_923532 102 20 of of IN 10_1101-2020_01_28_923532 102 21 a a DT 10_1101-2020_01_28_923532 102 22 given give VBN 10_1101-2020_01_28_923532 102 23 tumor tumor NN 10_1101-2020_01_28_923532 102 24 and and CC 10_1101-2020_01_28_923532 102 25 what what WP 10_1101-2020_01_28_923532 102 26 is be VBZ 10_1101-2020_01_28_923532 102 27 the the DT 10_1101-2020_01_28_923532 102 28 tradeoff tradeoff NN 10_1101-2020_01_28_923532 102 29 between between IN 10_1101-2020_01_28_923532 102 30 cancer cancer NN 10_1101-2020_01_28_923532 102 31 cells cell NNS 10_1101-2020_01_28_923532 102 32 killed kill VBN 10_1101-2020_01_28_923532 102 33 and and CC 10_1101-2020_01_28_923532 102 34 non non JJ 10_1101-2020_01_28_923532 102 35 - - JJ 10_1101-2020_01_28_923532 102 36 cancer cancer JJ 10_1101-2020_01_28_923532 102 37 cells cell NNS 10_1101-2020_01_28_923532 102 38 spared spare VBN 10_1101-2020_01_28_923532 102 39 ? ? . 10_1101-2020_01_28_923532 103 1 Figure figure NN 10_1101-2020_01_28_923532 103 2 2 2 CD 10_1101-2020_01_28_923532 103 3 shows show VBZ 10_1101-2020_01_28_923532 103 4 a a DT 10_1101-2020_01_28_923532 103 5 small small JJ 10_1101-2020_01_28_923532 103 6 schematic schematic JJ 10_1101-2020_01_28_923532 103 7 example example NN 10_1101-2020_01_28_923532 103 8 in in IN 10_1101-2020_01_28_923532 103 9 which which WDT 10_1101-2020_01_28_923532 103 10 there there EX 10_1101-2020_01_28_923532 103 11 are be VBP 10_1101-2020_01_28_923532 103 12 alternative alternative JJ 10_1101-2020_01_28_923532 103 13 target target NN 10_1101-2020_01_28_923532 103 14 sets set NNS 10_1101-2020_01_28_923532 103 15 of of IN 10_1101-2020_01_28_923532 103 16 sizes size NNS 10_1101-2020_01_28_923532 103 17 two two CD 10_1101-2020_01_28_923532 103 18 and and CC 10_1101-2020_01_28_923532 103 19 three three CD 10_1101-2020_01_28_923532 103 20 . . . 10_1101-2020_01_28_923532 104 1 One one PRP 10_1101-2020_01_28_923532 104 2 would would MD 10_1101-2020_01_28_923532 104 3 prefer prefer VB 10_1101-2020_01_28_923532 104 4 the the DT 10_1101-2020_01_28_923532 104 5 target target NN 10_1101-2020_01_28_923532 104 6 set set VBN 10_1101-2020_01_28_923532 104 7 of of IN 10_1101-2020_01_28_923532 104 8 size size NN 10_1101-2020_01_28_923532 104 9 two two CD 10_1101-2020_01_28_923532 104 10 because because IN 10_1101-2020_01_28_923532 104 11 the the DT 10_1101-2020_01_28_923532 104 12 patients patient NNS 10_1101-2020_01_28_923532 104 13 would would MD 10_1101-2020_01_28_923532 104 14 need need VB 10_1101-2020_01_28_923532 104 15 to to TO 10_1101-2020_01_28_923532 104 16 receive receive VB 10_1101-2020_01_28_923532 104 17 only only RB 10_1101-2020_01_28_923532 104 18 two two CD 10_1101-2020_01_28_923532 104 19 distinct distinct JJ 10_1101-2020_01_28_923532 104 20 treatments treatment NNS 10_1101-2020_01_28_923532 104 21 rather rather RB 10_1101-2020_01_28_923532 104 22 than than IN 10_1101-2020_01_28_923532 104 23 three three CD 10_1101-2020_01_28_923532 104 24 treatments treatment NNS 10_1101-2020_01_28_923532 104 25 . . . 10_1101-2020_01_28_923532 105 1 Figure figure NN 10_1101-2020_01_28_923532 105 2 2 2 CD 10_1101-2020_01_28_923532 105 3 . . . 10_1101-2020_01_28_923532 106 1 A a DT 10_1101-2020_01_28_923532 106 2 schematic schematic JJ 10_1101-2020_01_28_923532 106 3 small small JJ 10_1101-2020_01_28_923532 106 4 example example NN 10_1101-2020_01_28_923532 106 5 of of IN 10_1101-2020_01_28_923532 106 6 killing kill VBG 10_1101-2020_01_28_923532 106 7 a a DT 10_1101-2020_01_28_923532 106 8 four four CD 10_1101-2020_01_28_923532 106 9 tumor tumor NN 10_1101-2020_01_28_923532 106 10 cells cell NNS 10_1101-2020_01_28_923532 106 11 illustrating illustrate VBG 10_1101-2020_01_28_923532 106 12 why why WRB 10_1101-2020_01_28_923532 106 13 choosing choose VBG 10_1101-2020_01_28_923532 106 14 a a DT 10_1101-2020_01_28_923532 106 15 minimum minimum JJ 10_1101-2020_01_28_923532 106 16 - - HYPH 10_1101-2020_01_28_923532 106 17 size size NN 10_1101-2020_01_28_923532 106 18 combination combination NN 10_1101-2020_01_28_923532 106 19 of of IN 10_1101-2020_01_28_923532 106 20 targets target NNS 10_1101-2020_01_28_923532 106 21 may may MD 10_1101-2020_01_28_923532 106 22 be be VB 10_1101-2020_01_28_923532 106 23 non non JJ 10_1101-2020_01_28_923532 106 24 - - JJ 10_1101-2020_01_28_923532 106 25 trivial trivial JJ 10_1101-2020_01_28_923532 106 26 . . . 10_1101-2020_01_28_923532 107 1 The the DT 10_1101-2020_01_28_923532 107 2 schematic schematic JJ 10_1101-2020_01_28_923532 107 3 tumor tumor NN 10_1101-2020_01_28_923532 107 4 has have VBZ 10_1101-2020_01_28_923532 107 5 four four CD 10_1101-2020_01_28_923532 107 6 cancer cancer NN 10_1101-2020_01_28_923532 107 7 cells cell NNS 10_1101-2020_01_28_923532 107 8 ( ( -LRB- 10_1101-2020_01_28_923532 107 9 A a NN 10_1101-2020_01_28_923532 107 10 , , , 10_1101-2020_01_28_923532 107 11 B b NN 10_1101-2020_01_28_923532 107 12 , , , 10_1101-2020_01_28_923532 107 13 C C NNP 10_1101-2020_01_28_923532 107 14 , , , 10_1101-2020_01_28_923532 107 15 D d NN 10_1101-2020_01_28_923532 107 16 in in IN 10_1101-2020_01_28_923532 107 17 separate separate JJ 10_1101-2020_01_28_923532 107 18 columns column NNS 10_1101-2020_01_28_923532 107 19 ) ) -RRB- 10_1101-2020_01_28_923532 107 20 , , , 10_1101-2020_01_28_923532 107 21 which which WDT 10_1101-2020_01_28_923532 107 22 may may MD 10_1101-2020_01_28_923532 107 23 express express VB 10_1101-2020_01_28_923532 107 24 any any DT 10_1101-2020_01_28_923532 107 25 of of IN 10_1101-2020_01_28_923532 107 26 five five CD 10_1101-2020_01_28_923532 107 27 cell cell NN 10_1101-2020_01_28_923532 107 28 - - HYPH 10_1101-2020_01_28_923532 107 29 surface surface NN 10_1101-2020_01_28_923532 107 30 receptor receptor NN 10_1101-2020_01_28_923532 107 31 genes gene NNS 10_1101-2020_01_28_923532 107 32 ( ( -LRB- 10_1101-2020_01_28_923532 107 33 rows row NNS 10_1101-2020_01_28_923532 107 34 ) ) -RRB- 10_1101-2020_01_28_923532 107 35 that that WDT 10_1101-2020_01_28_923532 107 36 may may MD 10_1101-2020_01_28_923532 107 37 be be VB 10_1101-2020_01_28_923532 107 38 targeted target VBN 10_1101-2020_01_28_923532 107 39 selectively selectively RB 10_1101-2020_01_28_923532 107 40 by by IN 10_1101-2020_01_28_923532 107 41 modular modular JJ 10_1101-2020_01_28_923532 107 42 treatments treatment NNS 10_1101-2020_01_28_923532 107 43 ( ( -LRB- 10_1101-2020_01_28_923532 107 44 pills pill NNS 10_1101-2020_01_28_923532 107 45 ) ) -RRB- 10_1101-2020_01_28_923532 107 46 . . . 10_1101-2020_01_28_923532 108 1 If if IN 10_1101-2020_01_28_923532 108 2 one one CD 10_1101-2020_01_28_923532 108 3 targets target VBZ 10_1101-2020_01_28_923532 108 4 { { -LRB- 10_1101-2020_01_28_923532 108 5 APP APP NNP 10_1101-2020_01_28_923532 108 6 , , , 10_1101-2020_01_28_923532 108 7 KDR KDR NNP 10_1101-2020_01_28_923532 108 8 , , , 10_1101-2020_01_28_923532 108 9 MET MET NNP 10_1101-2020_01_28_923532 108 10 } } -RRB- 10_1101-2020_01_28_923532 108 11 , , , 10_1101-2020_01_28_923532 108 12 all all DT 10_1101-2020_01_28_923532 108 13 cancer cancer NN 10_1101-2020_01_28_923532 108 14 105 105 CD 10_1101-2020_01_28_923532 108 15 and and CC 10_1101-2020_01_28_923532 108 16 is be VBZ 10_1101-2020_01_28_923532 108 17 also also RB 10_1101-2020_01_28_923532 108 18 made make VBN 10_1101-2020_01_28_923532 108 19 available available JJ 10_1101-2020_01_28_923532 108 20 for for IN 10_1101-2020_01_28_923532 108 21 use use NN 10_1101-2020_01_28_923532 108 22 under under IN 10_1101-2020_01_28_923532 108 23 a a DT 10_1101-2020_01_28_923532 108 24 CC0 CC0 NNP 10_1101-2020_01_28_923532 108 25 license license NN 10_1101-2020_01_28_923532 108 26 . . . 10_1101-2020_01_28_923532 109 1 ( ( -LRB- 10_1101-2020_01_28_923532 109 2 which which WDT 10_1101-2020_01_28_923532 109 3 was be VBD 10_1101-2020_01_28_923532 109 4 not not RB 10_1101-2020_01_28_923532 109 5 certified certify VBN 10_1101-2020_01_28_923532 109 6 by by IN 10_1101-2020_01_28_923532 109 7 peer peer NN 10_1101-2020_01_28_923532 109 8 review review NN 10_1101-2020_01_28_923532 109 9 ) ) -RRB- 10_1101-2020_01_28_923532 109 10 is be VBZ 10_1101-2020_01_28_923532 109 11 the the DT 10_1101-2020_01_28_923532 109 12 author author NN 10_1101-2020_01_28_923532 109 13 / / SYM 10_1101-2020_01_28_923532 109 14 funder funder NN 10_1101-2020_01_28_923532 109 15 . . . 10_1101-2020_01_28_923532 110 1 This this DT 10_1101-2020_01_28_923532 110 2 article article NN 10_1101-2020_01_28_923532 110 3 is be VBZ 10_1101-2020_01_28_923532 110 4 a a DT 10_1101-2020_01_28_923532 110 5 US US NNP 10_1101-2020_01_28_923532 110 6 Government Government NNP 10_1101-2020_01_28_923532 110 7 work work NN 10_1101-2020_01_28_923532 110 8 . . . 10_1101-2020_01_28_923532 111 1 It -PRON- PRP 10_1101-2020_01_28_923532 111 2 is be VBZ 10_1101-2020_01_28_923532 111 3 not not RB 10_1101-2020_01_28_923532 111 4 subject subject JJ 10_1101-2020_01_28_923532 111 5 to to IN 10_1101-2020_01_28_923532 111 6 copyright copyright NN 10_1101-2020_01_28_923532 111 7 under under IN 10_1101-2020_01_28_923532 111 8 17 17 CD 10_1101-2020_01_28_923532 111 9 USC usc NN 10_1101-2020_01_28_923532 111 10 The the DT 10_1101-2020_01_28_923532 111 11 copyright copyright NN 10_1101-2020_01_28_923532 111 12 holder holder NN 10_1101-2020_01_28_923532 111 13 for for IN 10_1101-2020_01_28_923532 111 14 this this DT 10_1101-2020_01_28_923532 111 15 preprintthis preprintthis NN 10_1101-2020_01_28_923532 111 16 version version NN 10_1101-2020_01_28_923532 111 17 posted post VBD 10_1101-2020_01_28_923532 111 18 February February NNP 10_1101-2020_01_28_923532 111 19 12 12 CD 10_1101-2020_01_28_923532 111 20 , , , 10_1101-2020_01_28_923532 111 21 2021 2021 CD 10_1101-2020_01_28_923532 111 22 . . . 10_1101-2020_01_28_923532 111 23 ; ; : 10_1101-2020_01_28_923532 111 24 https://doi.org/10.1101/2020.01.28.923532doi https://doi.org/10.1101/2020.01.28.923532doi ADD 10_1101-2020_01_28_923532 111 25 : : : 10_1101-2020_01_28_923532 111 26 bioRxiv biorxiv VB 10_1101-2020_01_28_923532 111 27 preprint preprint NN 10_1101-2020_01_28_923532 111 28 https://doi.org/10.1101/2020.01.28.923532 https://doi.org/10.1101/2020.01.28.923532 PRP 10_1101-2020_01_28_923532 111 29 10 10 CD 10_1101-2020_01_28_923532 111 30 cells cell NNS 10_1101-2020_01_28_923532 111 31 will will MD 10_1101-2020_01_28_923532 111 32 be be VB 10_1101-2020_01_28_923532 111 33 killed kill VBN 10_1101-2020_01_28_923532 111 34 ( ( -LRB- 10_1101-2020_01_28_923532 111 35 left leave VBN 10_1101-2020_01_28_923532 111 36 panel panel NN 10_1101-2020_01_28_923532 111 37 ) ) -RRB- 10_1101-2020_01_28_923532 111 38 . . . 10_1101-2020_01_28_923532 112 1 However however RB 10_1101-2020_01_28_923532 112 2 , , , 10_1101-2020_01_28_923532 112 3 if if IN 10_1101-2020_01_28_923532 112 4 , , , 10_1101-2020_01_28_923532 112 5 instead instead RB 10_1101-2020_01_28_923532 112 6 , , , 10_1101-2020_01_28_923532 112 7 one one PRP 10_1101-2020_01_28_923532 112 8 would would MD 10_1101-2020_01_28_923532 112 9 target target VB 10_1101-2020_01_28_923532 112 10 { { -LRB- 10_1101-2020_01_28_923532 112 11 CR2 CR2 NNP 10_1101-2020_01_28_923532 112 12 , , , 10_1101-2020_01_28_923532 112 13 TEK TEK NNP 10_1101-2020_01_28_923532 112 14 } } -RRB- 10_1101-2020_01_28_923532 112 15 then then RB 10_1101-2020_01_28_923532 112 16 all all DT 10_1101-2020_01_28_923532 112 17 cancer cancer NN 10_1101-2020_01_28_923532 112 18 cells cell NNS 10_1101-2020_01_28_923532 112 19 in in IN 10_1101-2020_01_28_923532 112 20 the the DT 10_1101-2020_01_28_923532 112 21 given give VBN 10_1101-2020_01_28_923532 112 22 example example NN 10_1101-2020_01_28_923532 112 23 tumor tumor NN 10_1101-2020_01_28_923532 112 24 will will MD 10_1101-2020_01_28_923532 112 25 be be VB 10_1101-2020_01_28_923532 112 26 killed kill VBN 10_1101-2020_01_28_923532 112 27 with with IN 10_1101-2020_01_28_923532 112 28 just just RB 10_1101-2020_01_28_923532 112 29 two two CD 10_1101-2020_01_28_923532 112 30 targets target NNS 10_1101-2020_01_28_923532 112 31 ( ( -LRB- 10_1101-2020_01_28_923532 112 32 right right JJ 10_1101-2020_01_28_923532 112 33 panel panel NN 10_1101-2020_01_28_923532 112 34 ) ) -RRB- 10_1101-2020_01_28_923532 112 35 instead instead RB 10_1101-2020_01_28_923532 112 36 of of IN 10_1101-2020_01_28_923532 112 37 three three CD 10_1101-2020_01_28_923532 112 38 , , , 10_1101-2020_01_28_923532 112 39 providing provide VBG 10_1101-2020_01_28_923532 112 40 a a DT 10_1101-2020_01_28_923532 112 41 smaller small JJR 10_1101-2020_01_28_923532 112 42 solution solution NN 10_1101-2020_01_28_923532 112 43 . . . 10_1101-2020_01_28_923532 113 1 To to TO 10_1101-2020_01_28_923532 113 2 formalize formalize VB 10_1101-2020_01_28_923532 113 3 our -PRON- PRP$ 10_1101-2020_01_28_923532 113 4 questions question NNS 10_1101-2020_01_28_923532 113 5 as as IN 10_1101-2020_01_28_923532 113 6 combinatorial combinatorial JJ 10_1101-2020_01_28_923532 113 7 optimization optimization NN 10_1101-2020_01_28_923532 113 8 hitting hit VBG 10_1101-2020_01_28_923532 113 9 set set NN 10_1101-2020_01_28_923532 113 10 problems problem NNS 10_1101-2020_01_28_923532 113 11 , , , 10_1101-2020_01_28_923532 113 12 we -PRON- PRP 10_1101-2020_01_28_923532 113 13 define define VBP 10_1101-2020_01_28_923532 113 14 the the DT 10_1101-2020_01_28_923532 113 15 following follow VBG 10_1101-2020_01_28_923532 113 16 parameters parameter NNS 10_1101-2020_01_28_923532 113 17 and and CC 10_1101-2020_01_28_923532 113 18 baseline baseline JJ 10_1101-2020_01_28_923532 113 19 values value NNS 10_1101-2020_01_28_923532 113 20 and and CC 10_1101-2020_01_28_923532 113 21 explore explore VB 10_1101-2020_01_28_923532 113 22 how how WRB 10_1101-2020_01_28_923532 113 23 the the DT 10_1101-2020_01_28_923532 113 24 optimal optimal JJ 10_1101-2020_01_28_923532 113 25 answers answer NNS 10_1101-2020_01_28_923532 113 26 vary vary VBP 10_1101-2020_01_28_923532 113 27 as as IN 10_1101-2020_01_28_923532 113 28 functions function NNS 10_1101-2020_01_28_923532 113 29 of of IN 10_1101-2020_01_28_923532 113 30 these these DT 10_1101-2020_01_28_923532 113 31 parameters parameter NNS 10_1101-2020_01_28_923532 113 32 : : : 10_1101-2020_01_28_923532 113 33 We -PRON- PRP 10_1101-2020_01_28_923532 113 34 specify specify VBP 10_1101-2020_01_28_923532 113 35 a a DT 10_1101-2020_01_28_923532 113 36 lower low JJR 10_1101-2020_01_28_923532 113 37 bound bind VBN 10_1101-2020_01_28_923532 113 38 on on IN 10_1101-2020_01_28_923532 113 39 the the DT 10_1101-2020_01_28_923532 113 40 fraction fraction NN 10_1101-2020_01_28_923532 113 41 of of IN 10_1101-2020_01_28_923532 113 42 tumor tumor NN 10_1101-2020_01_28_923532 113 43 cells cell NNS 10_1101-2020_01_28_923532 113 44 that that WDT 10_1101-2020_01_28_923532 113 45 should should MD 10_1101-2020_01_28_923532 113 46 be be VB 10_1101-2020_01_28_923532 113 47 killed kill VBN 10_1101-2020_01_28_923532 113 48 , , , 10_1101-2020_01_28_923532 113 49 𝑙𝑏 𝑙𝑏 UH 10_1101-2020_01_28_923532 113 50 , , , 10_1101-2020_01_28_923532 113 51 which which WDT 10_1101-2020_01_28_923532 113 52 ranges range VBZ 10_1101-2020_01_28_923532 113 53 from from IN 10_1101-2020_01_28_923532 113 54 0 0 CD 10_1101-2020_01_28_923532 113 55 to to IN 10_1101-2020_01_28_923532 113 56 1 1 CD 10_1101-2020_01_28_923532 113 57 . . . 10_1101-2020_01_28_923532 114 1 Similarly similarly RB 10_1101-2020_01_28_923532 114 2 , , , 10_1101-2020_01_28_923532 114 3 we -PRON- PRP 10_1101-2020_01_28_923532 114 4 define define VBP 10_1101-2020_01_28_923532 114 5 an an DT 10_1101-2020_01_28_923532 114 6 upper upper JJ 10_1101-2020_01_28_923532 114 7 bound bind VBN 10_1101-2020_01_28_923532 114 8 on on IN 10_1101-2020_01_28_923532 114 9 the the DT 10_1101-2020_01_28_923532 114 10 fraction fraction NN 10_1101-2020_01_28_923532 114 11 of of IN 10_1101-2020_01_28_923532 114 12 non non JJ 10_1101-2020_01_28_923532 114 13 - - JJ 10_1101-2020_01_28_923532 114 14 tumor tumor JJ 10_1101-2020_01_28_923532 114 15 cells cell NNS 10_1101-2020_01_28_923532 114 16 killed kill VBN 10_1101-2020_01_28_923532 114 17 , , , 10_1101-2020_01_28_923532 114 18 𝑢𝑏 𝑢𝑏 NNP 10_1101-2020_01_28_923532 114 19 , , , 10_1101-2020_01_28_923532 114 20 which which WDT 10_1101-2020_01_28_923532 114 21 also also RB 10_1101-2020_01_28_923532 114 22 ranges range VBZ 10_1101-2020_01_28_923532 114 23 from from IN 10_1101-2020_01_28_923532 114 24 0 0 CD 10_1101-2020_01_28_923532 114 25 to to IN 10_1101-2020_01_28_923532 114 26 1 1 CD 10_1101-2020_01_28_923532 114 27 . . . 10_1101-2020_01_28_923532 115 1 Our -PRON- PRP$ 10_1101-2020_01_28_923532 115 2 baseline baseline JJ 10_1101-2020_01_28_923532 115 3 settings setting NNS 10_1101-2020_01_28_923532 115 4 are be VBP 10_1101-2020_01_28_923532 115 5 𝑙𝑏 𝑙𝑏 IN 10_1101-2020_01_28_923532 115 6 = = SYM 10_1101-2020_01_28_923532 115 7 0.8 0.8 CD 10_1101-2020_01_28_923532 115 8 and and CC 10_1101-2020_01_28_923532 115 9 𝑢𝑏 𝑢𝑏 NNP 10_1101-2020_01_28_923532 115 10 = = SYM 10_1101-2020_01_28_923532 115 11 0.1 0.1 CD 10_1101-2020_01_28_923532 115 12 . . . 10_1101-2020_01_28_923532 116 1 To to TO 10_1101-2020_01_28_923532 116 2 represent represent VB 10_1101-2020_01_28_923532 116 3 the the DT 10_1101-2020_01_28_923532 116 4 concept concept NN 10_1101-2020_01_28_923532 116 5 that that IN 10_1101-2020_01_28_923532 116 6 only only RB 10_1101-2020_01_28_923532 116 7 cells cell NNS 10_1101-2020_01_28_923532 116 8 that that WDT 10_1101-2020_01_28_923532 116 9 overexpress overexpress VBP 10_1101-2020_01_28_923532 116 10 the the DT 10_1101-2020_01_28_923532 116 11 target target NN 10_1101-2020_01_28_923532 116 12 , , , 10_1101-2020_01_28_923532 116 13 we -PRON- PRP 10_1101-2020_01_28_923532 116 14 introduce introduce VBP 10_1101-2020_01_28_923532 116 15 an an DT 10_1101-2020_01_28_923532 116 16 additional additional JJ 10_1101-2020_01_28_923532 116 17 parameter parameter NN 10_1101-2020_01_28_923532 116 18 𝑟. 𝑟. NN 10_1101-2020_01_28_923532 117 1 The the DT 10_1101-2020_01_28_923532 117 2 expression expression NN 10_1101-2020_01_28_923532 117 3 ratio ratio NN 10_1101-2020_01_28_923532 117 4 𝑟 𝑟 NNP 10_1101-2020_01_28_923532 117 5 defines define NNS 10_1101-2020_01_28_923532 117 6 which which WDT 10_1101-2020_01_28_923532 117 7 cells cell NNS 10_1101-2020_01_28_923532 117 8 are be VBP 10_1101-2020_01_28_923532 117 9 killed kill VBN 10_1101-2020_01_28_923532 117 10 , , , 10_1101-2020_01_28_923532 117 11 as as IN 10_1101-2020_01_28_923532 117 12 follows follow VBZ 10_1101-2020_01_28_923532 117 13 ( ( -LRB- 10_1101-2020_01_28_923532 117 14 Figure figure NN 10_1101-2020_01_28_923532 117 15 1B 1b NN 10_1101-2020_01_28_923532 117 16 ) ) -RRB- 10_1101-2020_01_28_923532 117 17 : : : 10_1101-2020_01_28_923532 117 18 Denote denote VB 10_1101-2020_01_28_923532 117 19 the the DT 10_1101-2020_01_28_923532 117 20 mean mean JJ 10_1101-2020_01_28_923532 117 21 expression expression NN 10_1101-2020_01_28_923532 117 22 of of IN 10_1101-2020_01_28_923532 117 23 a a DT 10_1101-2020_01_28_923532 117 24 gene gene NN 10_1101-2020_01_28_923532 117 25 𝑔 𝑔 NN 10_1101-2020_01_28_923532 117 26 in in IN 10_1101-2020_01_28_923532 117 27 non non JJ 10_1101-2020_01_28_923532 117 28 - - JJ 10_1101-2020_01_28_923532 117 29 cancer cancer JJ 10_1101-2020_01_28_923532 117 30 cells cell NNS 10_1101-2020_01_28_923532 117 31 that that WDT 10_1101-2020_01_28_923532 117 32 have have VBP 10_1101-2020_01_28_923532 117 33 non- non- NN 10_1101-2020_01_28_923532 117 34 zero zero CD 10_1101-2020_01_28_923532 117 35 expression expression NN 10_1101-2020_01_28_923532 117 36 by by IN 10_1101-2020_01_28_923532 117 37 E(𝑔 e(𝑔 NN 10_1101-2020_01_28_923532 117 38 ) ) -RRB- 10_1101-2020_01_28_923532 117 39 . . . 10_1101-2020_01_28_923532 118 1 A a DT 10_1101-2020_01_28_923532 118 2 given give VBN 10_1101-2020_01_28_923532 118 3 cell cell NN 10_1101-2020_01_28_923532 118 4 is be VBZ 10_1101-2020_01_28_923532 118 5 considered consider VBN 10_1101-2020_01_28_923532 118 6 killed kill VBN 10_1101-2020_01_28_923532 118 7 if if IN 10_1101-2020_01_28_923532 118 8 gene gene NN 10_1101-2020_01_28_923532 118 9 𝑔 𝑔 NNP 10_1101-2020_01_28_923532 118 10 is be VBZ 10_1101-2020_01_28_923532 118 11 targeted target VBN 10_1101-2020_01_28_923532 118 12 and and CC 10_1101-2020_01_28_923532 118 13 its -PRON- PRP$ 10_1101-2020_01_28_923532 118 14 expression expression NN 10_1101-2020_01_28_923532 118 15 level level NN 10_1101-2020_01_28_923532 118 16 in in IN 10_1101-2020_01_28_923532 118 17 that that DT 10_1101-2020_01_28_923532 118 18 cell cell NN 10_1101-2020_01_28_923532 118 19 is be VBZ 10_1101-2020_01_28_923532 118 20 at at IN 10_1101-2020_01_28_923532 118 21 least least JJS 10_1101-2020_01_28_923532 118 22 𝑟 𝑟 NN 10_1101-2020_01_28_923532 118 23 × × NNP 10_1101-2020_01_28_923532 118 24 𝐸(𝑔 𝐸(𝑔 NNP 10_1101-2020_01_28_923532 118 25 ) ) -RRB- 10_1101-2020_01_28_923532 118 26 . . . 10_1101-2020_01_28_923532 119 1 Higher high JJR 10_1101-2020_01_28_923532 119 2 values value NNS 10_1101-2020_01_28_923532 119 3 of of IN 10_1101-2020_01_28_923532 119 4 𝑟 𝑟 DT 10_1101-2020_01_28_923532 119 5 thus thus RB 10_1101-2020_01_28_923532 119 6 model model NN 10_1101-2020_01_28_923532 119 7 more more RBR 10_1101-2020_01_28_923532 119 8 selective selective JJ 10_1101-2020_01_28_923532 119 9 killing killing NN 10_1101-2020_01_28_923532 119 10 . . . 10_1101-2020_01_28_923532 120 1 Having have VBG 10_1101-2020_01_28_923532 120 2 𝑟 𝑟 XX 10_1101-2020_01_28_923532 120 3 as as IN 10_1101-2020_01_28_923532 120 4 a a DT 10_1101-2020_01_28_923532 120 5 modifiable modifiable JJ 10_1101-2020_01_28_923532 120 6 parameter parameter NN 10_1101-2020_01_28_923532 120 7 anticipates anticipate VBZ 10_1101-2020_01_28_923532 120 8 that that IN 10_1101-2020_01_28_923532 120 9 in in IN 10_1101-2020_01_28_923532 120 10 the the DT 10_1101-2020_01_28_923532 120 11 future future NN 10_1101-2020_01_28_923532 120 12 one one PRP 10_1101-2020_01_28_923532 120 13 could could MD 10_1101-2020_01_28_923532 120 14 experimentally experimentally RB 10_1101-2020_01_28_923532 120 15 tune tune VB 10_1101-2020_01_28_923532 120 16 the the DT 10_1101-2020_01_28_923532 120 17 overexpression overexpression NN 10_1101-2020_01_28_923532 120 18 level level NN 10_1101-2020_01_28_923532 120 19 at at IN 10_1101-2020_01_28_923532 120 20 which which WDT 10_1101-2020_01_28_923532 120 21 cell cell NN 10_1101-2020_01_28_923532 120 22 killing killing NN 10_1101-2020_01_28_923532 120 23 occurs24 occurs24 RB 10_1101-2020_01_28_923532 120 24 . . . 10_1101-2020_01_28_923532 121 1 In in IN 10_1101-2020_01_28_923532 121 2 this this DT 10_1101-2020_01_28_923532 121 3 respect respect NN 10_1101-2020_01_28_923532 121 4 , , , 10_1101-2020_01_28_923532 121 5 technologies technology NNS 10_1101-2020_01_28_923532 121 6 that that WDT 10_1101-2020_01_28_923532 121 7 rely rely VBP 10_1101-2020_01_28_923532 121 8 on on IN 10_1101-2020_01_28_923532 121 9 RME RME NNP 10_1101-2020_01_28_923532 121 10 to to TO 10_1101-2020_01_28_923532 121 11 get get VB 10_1101-2020_01_28_923532 121 12 a a DT 10_1101-2020_01_28_923532 121 13 toxin toxin NN 10_1101-2020_01_28_923532 121 14 into into IN 10_1101-2020_01_28_923532 121 15 the the DT 10_1101-2020_01_28_923532 121 16 cell cell NN 10_1101-2020_01_28_923532 121 17 are be VBP 10_1101-2020_01_28_923532 121 18 particularly particularly RB 10_1101-2020_01_28_923532 121 19 tunable tunable JJ 10_1101-2020_01_28_923532 121 20 because because IN 10_1101-2020_01_28_923532 121 21 there there EX 10_1101-2020_01_28_923532 121 22 is be VBZ 10_1101-2020_01_28_923532 121 23 known know VBN 10_1101-2020_01_28_923532 121 24 to to TO 10_1101-2020_01_28_923532 121 25 be be VB 10_1101-2020_01_28_923532 121 26 a a DT 10_1101-2020_01_28_923532 121 27 non non JJ 10_1101-2020_01_28_923532 121 28 - - JJ 10_1101-2020_01_28_923532 121 29 linear linear JJ 10_1101-2020_01_28_923532 121 30 relationship relationship NN 10_1101-2020_01_28_923532 121 31 between between IN 10_1101-2020_01_28_923532 121 32 the the DT 10_1101-2020_01_28_923532 121 33 number number NN 10_1101-2020_01_28_923532 121 34 of of IN 10_1101-2020_01_28_923532 121 35 protein protein NN 10_1101-2020_01_28_923532 121 36 copies copy NNS 10_1101-2020_01_28_923532 121 37 on on IN 10_1101-2020_01_28_923532 121 38 the the DT 10_1101-2020_01_28_923532 121 39 cell cell NN 10_1101-2020_01_28_923532 121 40 surface surface NN 10_1101-2020_01_28_923532 121 41 and and CC 10_1101-2020_01_28_923532 121 42 the the DT 10_1101-2020_01_28_923532 121 43 probability probability NN 10_1101-2020_01_28_923532 121 44 that that WDT 10_1101-2020_01_28_923532 121 45 RME RME NNP 10_1101-2020_01_28_923532 121 46 occurs occur VBZ 10_1101-2020_01_28_923532 121 47 successfully37 successfully37 NNP 10_1101-2020_01_28_923532 121 48 . . . 10_1101-2020_01_28_923532 122 1 In in IN 10_1101-2020_01_28_923532 122 2 these these DT 10_1101-2020_01_28_923532 122 3 technologies technology NNS 10_1101-2020_01_28_923532 122 4 , , , 10_1101-2020_01_28_923532 122 5 the the DT 10_1101-2020_01_28_923532 122 6 toxin toxin NN 10_1101-2020_01_28_923532 122 7 or or CC 10_1101-2020_01_28_923532 122 8 other other JJ 10_1101-2020_01_28_923532 122 9 therapy therapy NN 10_1101-2020_01_28_923532 122 10 delivered deliver VBN 10_1101-2020_01_28_923532 122 11 by by IN 10_1101-2020_01_28_923532 122 12 the the DT 10_1101-2020_01_28_923532 122 13 modular modular JJ 10_1101-2020_01_28_923532 122 14 treatment treatment NN 10_1101-2020_01_28_923532 122 15 enters enter VBZ 10_1101-2020_01_28_923532 122 16 cells cell NNS 10_1101-2020_01_28_923532 122 17 in in IN 10_1101-2020_01_28_923532 122 18 a a DT 10_1101-2020_01_28_923532 122 19 gene gene NN 10_1101-2020_01_28_923532 122 20 - - HYPH 10_1101-2020_01_28_923532 122 21 specific specific JJ 10_1101-2020_01_28_923532 122 22 manner38 manner38 NNS 10_1101-2020_01_28_923532 122 23 , , , 10_1101-2020_01_28_923532 122 24 while while IN 10_1101-2020_01_28_923532 122 25 CAR- CAR- NNP 10_1101-2020_01_28_923532 122 26 T T NNP 10_1101-2020_01_28_923532 122 27 therapy therapy NN 10_1101-2020_01_28_923532 122 28 activates activate VBZ 10_1101-2020_01_28_923532 122 29 T t NN 10_1101-2020_01_28_923532 122 30 - - HYPH 10_1101-2020_01_28_923532 122 31 cell cell NN 10_1101-2020_01_28_923532 122 32 killing killing NN 10_1101-2020_01_28_923532 122 33 against against IN 10_1101-2020_01_28_923532 122 34 cells cell NNS 10_1101-2020_01_28_923532 122 35 in in IN 10_1101-2020_01_28_923532 122 36 a a DT 10_1101-2020_01_28_923532 122 37 gene gene NN 10_1101-2020_01_28_923532 122 38 - - HYPH 10_1101-2020_01_28_923532 122 39 specific specific JJ 10_1101-2020_01_28_923532 122 40 manner24,25 manner24,25 NNP 10_1101-2020_01_28_923532 122 41 . . . 10_1101-2020_01_28_923532 123 1 For for IN 10_1101-2020_01_28_923532 123 2 most most JJS 10_1101-2020_01_28_923532 123 3 of of IN 10_1101-2020_01_28_923532 123 4 our -PRON- PRP$ 10_1101-2020_01_28_923532 123 5 analyses analysis NNS 10_1101-2020_01_28_923532 123 6 , , , 10_1101-2020_01_28_923532 123 7 the the DT 10_1101-2020_01_28_923532 123 8 expression expression NN 10_1101-2020_01_28_923532 123 9 ratio ratio NN 10_1101-2020_01_28_923532 123 10 𝑟 𝑟 NNP 10_1101-2020_01_28_923532 123 11 is be VBZ 10_1101-2020_01_28_923532 123 12 varied varied JJ 10_1101-2020_01_28_923532 123 13 from from IN 10_1101-2020_01_28_923532 123 14 1.5 1.5 CD 10_1101-2020_01_28_923532 123 15 to to IN 10_1101-2020_01_28_923532 123 16 3.0 3.0 CD 10_1101-2020_01_28_923532 123 17 , , , 10_1101-2020_01_28_923532 123 18 with with IN 10_1101-2020_01_28_923532 123 19 a a DT 10_1101-2020_01_28_923532 123 20 baseline baseline NN 10_1101-2020_01_28_923532 123 21 of of IN 10_1101-2020_01_28_923532 123 22 2.0 2.0 CD 10_1101-2020_01_28_923532 123 23 , , , 10_1101-2020_01_28_923532 123 24 based base VBN 10_1101-2020_01_28_923532 123 25 on on IN 10_1101-2020_01_28_923532 123 26 experiments experiment NNS 10_1101-2020_01_28_923532 123 27 in in IN 10_1101-2020_01_28_923532 123 28 the the DT 10_1101-2020_01_28_923532 123 29 lab lab NN 10_1101-2020_01_28_923532 123 30 of of IN 10_1101-2020_01_28_923532 123 31 N.A. N.A. NNP 10_1101-2020_01_28_923532 124 1 and and CC 10_1101-2020_01_28_923532 124 2 related relate VBN 10_1101-2020_01_28_923532 124 3 to to IN 10_1101-2020_01_28_923532 124 4 combinatorial combinatorial JJ 10_1101-2020_01_28_923532 124 5 chemistry chemistry NN 10_1101-2020_01_28_923532 124 6 modeling37 modeling37 NN 10_1101-2020_01_28_923532 124 7 ; ; : 10_1101-2020_01_28_923532 124 8 in in IN 10_1101-2020_01_28_923532 124 9 one one CD 10_1101-2020_01_28_923532 124 10 analysis analysis NN 10_1101-2020_01_28_923532 124 11 , , , 10_1101-2020_01_28_923532 124 12 we -PRON- PRP 10_1101-2020_01_28_923532 124 13 varied vary VBD 10_1101-2020_01_28_923532 124 14 r r NNP 10_1101-2020_01_28_923532 124 15 up up IN 10_1101-2020_01_28_923532 124 16 to to TO 10_1101-2020_01_28_923532 124 17 5.0 5.0 CD 10_1101-2020_01_28_923532 124 18 ( ( -LRB- 10_1101-2020_01_28_923532 124 19 Supplementary Supplementary NNP 10_1101-2020_01_28_923532 124 20 Table Table NNP 10_1101-2020_01_28_923532 124 21 S1 S1 NNS 10_1101-2020_01_28_923532 124 22 ) ) -RRB- 10_1101-2020_01_28_923532 124 23 . . . 10_1101-2020_01_28_923532 125 1 Given give VBN 10_1101-2020_01_28_923532 125 2 these these DT 10_1101-2020_01_28_923532 125 3 definitions definition NNS 10_1101-2020_01_28_923532 125 4 , , , 10_1101-2020_01_28_923532 125 5 we -PRON- PRP 10_1101-2020_01_28_923532 125 6 solve solve VBP 10_1101-2020_01_28_923532 125 7 the the DT 10_1101-2020_01_28_923532 125 8 following follow VBG 10_1101-2020_01_28_923532 125 9 combinatorial combinatorial JJ 10_1101-2020_01_28_923532 125 10 optimization optimization NN 10_1101-2020_01_28_923532 125 11 hitting hit VBG 10_1101-2020_01_28_923532 125 12 set set NN 10_1101-2020_01_28_923532 125 13 problem problem NN 10_1101-2020_01_28_923532 125 14 ( ( -LRB- 10_1101-2020_01_28_923532 125 15 Methods Methods NNP 10_1101-2020_01_28_923532 125 16 ) ) -RRB- 10_1101-2020_01_28_923532 125 17 : : : 10_1101-2020_01_28_923532 125 18 Given give VBN 10_1101-2020_01_28_923532 125 19 an an DT 10_1101-2020_01_28_923532 125 20 input input NN 10_1101-2020_01_28_923532 125 21 of of IN 10_1101-2020_01_28_923532 125 22 a a DT 10_1101-2020_01_28_923532 125 23 single single JJ 10_1101-2020_01_28_923532 125 24 - - HYPH 10_1101-2020_01_28_923532 125 25 cell cell NN 10_1101-2020_01_28_923532 125 26 transcriptomics transcriptomic NNS 10_1101-2020_01_28_923532 125 27 sample sample NN 10_1101-2020_01_28_923532 125 28 of of IN 10_1101-2020_01_28_923532 125 29 non non JJ 10_1101-2020_01_28_923532 125 30 - - JJ 10_1101-2020_01_28_923532 125 31 tumor tumor JJ 10_1101-2020_01_28_923532 125 32 and and CC 10_1101-2020_01_28_923532 125 33 tumor tumor NN 10_1101-2020_01_28_923532 125 34 cells cell NNS 10_1101-2020_01_28_923532 125 35 for for IN 10_1101-2020_01_28_923532 125 36 each each DT 10_1101-2020_01_28_923532 125 37 patient patient NN 10_1101-2020_01_28_923532 125 38 in in IN 10_1101-2020_01_28_923532 125 39 a a DT 10_1101-2020_01_28_923532 125 40 cohort cohort NN 10_1101-2020_01_28_923532 125 41 of of IN 10_1101-2020_01_28_923532 125 42 multiple multiple JJ 10_1101-2020_01_28_923532 125 43 patients patient NNS 10_1101-2020_01_28_923532 125 44 , , , 10_1101-2020_01_28_923532 125 45 bounds bound NNS 10_1101-2020_01_28_923532 125 46 𝑢𝑏 𝑢𝑏 NNP 10_1101-2020_01_28_923532 125 47 and and CC 10_1101-2020_01_28_923532 125 48 𝑙𝑏 𝑙𝑏 NNP 10_1101-2020_01_28_923532 125 49 , , , 10_1101-2020_01_28_923532 125 50 ratio ratio NN 10_1101-2020_01_28_923532 125 51 𝑟 𝑟 NNP 10_1101-2020_01_28_923532 125 52 , , , 10_1101-2020_01_28_923532 125 53 and and CC 10_1101-2020_01_28_923532 125 54 a a DT 10_1101-2020_01_28_923532 125 55 set set NN 10_1101-2020_01_28_923532 125 56 of of IN 10_1101-2020_01_28_923532 125 57 target target NN 10_1101-2020_01_28_923532 125 58 genes gene NNS 10_1101-2020_01_28_923532 125 59 , , , 10_1101-2020_01_28_923532 125 60 we -PRON- PRP 10_1101-2020_01_28_923532 125 61 seek seek VBP 10_1101-2020_01_28_923532 125 62 to to TO 10_1101-2020_01_28_923532 125 63 find find VB 10_1101-2020_01_28_923532 125 64 a a DT 10_1101-2020_01_28_923532 125 65 solution solution NN 10_1101-2020_01_28_923532 125 66 that that WDT 10_1101-2020_01_28_923532 125 67 finds find VBZ 10_1101-2020_01_28_923532 125 68 a a DT 10_1101-2020_01_28_923532 125 69 minimum minimum JJ 10_1101-2020_01_28_923532 125 70 - - HYPH 10_1101-2020_01_28_923532 125 71 size size NN 10_1101-2020_01_28_923532 125 72 combination combination NN 10_1101-2020_01_28_923532 125 73 of of IN 10_1101-2020_01_28_923532 125 74 targets target NNS 10_1101-2020_01_28_923532 125 75 in in IN 10_1101-2020_01_28_923532 125 76 each each DT 10_1101-2020_01_28_923532 125 77 individual individual JJ 10_1101-2020_01_28_923532 125 78 patient patient NN 10_1101-2020_01_28_923532 125 79 , , , 10_1101-2020_01_28_923532 125 80 while while IN 10_1101-2020_01_28_923532 125 81 additionally additionally RB 10_1101-2020_01_28_923532 125 82 minimizing minimize VBG 10_1101-2020_01_28_923532 125 83 the the DT 10_1101-2020_01_28_923532 125 84 size size NN 10_1101-2020_01_28_923532 125 85 of of IN 10_1101-2020_01_28_923532 125 86 all all DT 10_1101-2020_01_28_923532 125 87 targets target NNS 10_1101-2020_01_28_923532 125 88 given give VBN 10_1101-2020_01_28_923532 125 89 to to IN 10_1101-2020_01_28_923532 125 90 the the DT 10_1101-2020_01_28_923532 125 91 patients patient NNS 10_1101-2020_01_28_923532 125 92 cohort cohort NN 10_1101-2020_01_28_923532 125 93 . . . 10_1101-2020_01_28_923532 126 1 The the DT 10_1101-2020_01_28_923532 126 2 latter latter NN 10_1101-2020_01_28_923532 126 3 is be VBZ 10_1101-2020_01_28_923532 126 4 termed term VBN 10_1101-2020_01_28_923532 126 5 the the DT 10_1101-2020_01_28_923532 126 6 global global JJ 10_1101-2020_01_28_923532 126 7 minimum minimum JJ 10_1101-2020_01_28_923532 126 8 - - HYPH 10_1101-2020_01_28_923532 126 9 size size NN 10_1101-2020_01_28_923532 126 10 hitting hitting NN 10_1101-2020_01_28_923532 126 11 set set NN 10_1101-2020_01_28_923532 126 12 ( ( -LRB- 10_1101-2020_01_28_923532 126 13 GHS GHS NNP 10_1101-2020_01_28_923532 126 14 ) ) -RRB- 10_1101-2020_01_28_923532 126 15 in in IN 10_1101-2020_01_28_923532 126 16 computer computer NN 10_1101-2020_01_28_923532 126 17 science science NN 10_1101-2020_01_28_923532 126 18 terminology terminology NN 10_1101-2020_01_28_923532 126 19 or or CC 10_1101-2020_01_28_923532 126 20 the the DT 10_1101-2020_01_28_923532 126 21 cohort cohort NN 10_1101-2020_01_28_923532 126 22 target target NN 10_1101-2020_01_28_923532 126 23 set set VBN 10_1101-2020_01_28_923532 126 24 ( ( -LRB- 10_1101-2020_01_28_923532 126 25 CTS CTS NNP 10_1101-2020_01_28_923532 126 26 ) ) -RRB- 10_1101-2020_01_28_923532 126 27 in in IN 10_1101-2020_01_28_923532 126 28 terminology terminology NN 10_1101-2020_01_28_923532 126 29 specific specific JJ 10_1101-2020_01_28_923532 126 30 to to IN 10_1101-2020_01_28_923532 126 31 our -PRON- PRP$ 10_1101-2020_01_28_923532 126 32 problem problem NN 10_1101-2020_01_28_923532 126 33 , , , 10_1101-2020_01_28_923532 126 34 while while IN 10_1101-2020_01_28_923532 126 35 the the DT 10_1101-2020_01_28_923532 126 36 105 105 CD 10_1101-2020_01_28_923532 126 37 and and CC 10_1101-2020_01_28_923532 126 38 is be VBZ 10_1101-2020_01_28_923532 126 39 also also RB 10_1101-2020_01_28_923532 126 40 made make VBN 10_1101-2020_01_28_923532 126 41 available available JJ 10_1101-2020_01_28_923532 126 42 for for IN 10_1101-2020_01_28_923532 126 43 use use NN 10_1101-2020_01_28_923532 126 44 under under IN 10_1101-2020_01_28_923532 126 45 a a DT 10_1101-2020_01_28_923532 126 46 CC0 CC0 NNP 10_1101-2020_01_28_923532 126 47 license license NN 10_1101-2020_01_28_923532 126 48 . . . 10_1101-2020_01_28_923532 127 1 ( ( -LRB- 10_1101-2020_01_28_923532 127 2 which which WDT 10_1101-2020_01_28_923532 127 3 was be VBD 10_1101-2020_01_28_923532 127 4 not not RB 10_1101-2020_01_28_923532 127 5 certified certify VBN 10_1101-2020_01_28_923532 127 6 by by IN 10_1101-2020_01_28_923532 127 7 peer peer NN 10_1101-2020_01_28_923532 127 8 review review NN 10_1101-2020_01_28_923532 127 9 ) ) -RRB- 10_1101-2020_01_28_923532 127 10 is be VBZ 10_1101-2020_01_28_923532 127 11 the the DT 10_1101-2020_01_28_923532 127 12 author author NN 10_1101-2020_01_28_923532 127 13 / / SYM 10_1101-2020_01_28_923532 127 14 funder funder NN 10_1101-2020_01_28_923532 127 15 . . . 10_1101-2020_01_28_923532 128 1 This this DT 10_1101-2020_01_28_923532 128 2 article article NN 10_1101-2020_01_28_923532 128 3 is be VBZ 10_1101-2020_01_28_923532 128 4 a a DT 10_1101-2020_01_28_923532 128 5 US US NNP 10_1101-2020_01_28_923532 128 6 Government Government NNP 10_1101-2020_01_28_923532 128 7 work work NN 10_1101-2020_01_28_923532 128 8 . . . 10_1101-2020_01_28_923532 129 1 It -PRON- PRP 10_1101-2020_01_28_923532 129 2 is be VBZ 10_1101-2020_01_28_923532 129 3 not not RB 10_1101-2020_01_28_923532 129 4 subject subject JJ 10_1101-2020_01_28_923532 129 5 to to IN 10_1101-2020_01_28_923532 129 6 copyright copyright NN 10_1101-2020_01_28_923532 129 7 under under IN 10_1101-2020_01_28_923532 129 8 17 17 CD 10_1101-2020_01_28_923532 129 9 USC usc NN 10_1101-2020_01_28_923532 129 10 The the DT 10_1101-2020_01_28_923532 129 11 copyright copyright NN 10_1101-2020_01_28_923532 129 12 holder holder NN 10_1101-2020_01_28_923532 129 13 for for IN 10_1101-2020_01_28_923532 129 14 this this DT 10_1101-2020_01_28_923532 129 15 preprintthis preprintthis NN 10_1101-2020_01_28_923532 129 16 version version NN 10_1101-2020_01_28_923532 129 17 posted post VBD 10_1101-2020_01_28_923532 129 18 February February NNP 10_1101-2020_01_28_923532 129 19 12 12 CD 10_1101-2020_01_28_923532 129 20 , , , 10_1101-2020_01_28_923532 129 21 2021 2021 CD 10_1101-2020_01_28_923532 129 22 . . . 10_1101-2020_01_28_923532 129 23 ; ; : 10_1101-2020_01_28_923532 129 24 https://doi.org/10.1101/2020.01.28.923532doi https://doi.org/10.1101/2020.01.28.923532doi ADD 10_1101-2020_01_28_923532 129 25 : : : 10_1101-2020_01_28_923532 129 26 bioRxiv biorxiv VB 10_1101-2020_01_28_923532 129 27 preprint preprint NN 10_1101-2020_01_28_923532 129 28 https://doi.org/10.1101/2020.01.28.923532 https://doi.org/10.1101/2020.01.28.923532 UH 10_1101-2020_01_28_923532 129 29 11 11 CD 10_1101-2020_01_28_923532 129 30 optimal optimal JJ 10_1101-2020_01_28_923532 129 31 hitting hit VBG 10_1101-2020_01_28_923532 129 32 set set NN 10_1101-2020_01_28_923532 129 33 of of IN 10_1101-2020_01_28_923532 129 34 genes gene NNS 10_1101-2020_01_28_923532 129 35 targeting target VBG 10_1101-2020_01_28_923532 129 36 one one CD 10_1101-2020_01_28_923532 129 37 patient patient NN 10_1101-2020_01_28_923532 129 38 is be VBZ 10_1101-2020_01_28_923532 129 39 termed term VBN 10_1101-2020_01_28_923532 129 40 the the DT 10_1101-2020_01_28_923532 129 41 individual individual JJ 10_1101-2020_01_28_923532 129 42 target target NN 10_1101-2020_01_28_923532 129 43 set set VBN 10_1101-2020_01_28_923532 129 44 ( ( -LRB- 10_1101-2020_01_28_923532 129 45 ITS its PRP$ 10_1101-2020_01_28_923532 129 46 ) ) -RRB- 10_1101-2020_01_28_923532 129 47 . . . 10_1101-2020_01_28_923532 130 1 This this DT 10_1101-2020_01_28_923532 130 2 optimum optimum JJ 10_1101-2020_01_28_923532 130 3 hitting hit VBG 10_1101-2020_01_28_923532 130 4 set set NN 10_1101-2020_01_28_923532 130 5 problem problem NN 10_1101-2020_01_28_923532 130 6 with with IN 10_1101-2020_01_28_923532 130 7 constraints constraint NNS 10_1101-2020_01_28_923532 130 8 can can MD 10_1101-2020_01_28_923532 130 9 be be VB 10_1101-2020_01_28_923532 130 10 solved solve VBN 10_1101-2020_01_28_923532 130 11 to to IN 10_1101-2020_01_28_923532 130 12 optimality optimality NN 10_1101-2020_01_28_923532 130 13 using use VBG 10_1101-2020_01_28_923532 130 14 integer integer NN 10_1101-2020_01_28_923532 130 15 linear linear NNP 10_1101-2020_01_28_923532 130 16 programming programming NN 10_1101-2020_01_28_923532 130 17 ( ( -LRB- 10_1101-2020_01_28_923532 130 18 ILP ILP NNP 10_1101-2020_01_28_923532 130 19 ) ) -RRB- 10_1101-2020_01_28_923532 130 20 ( ( -LRB- 10_1101-2020_01_28_923532 130 21 Methods Methods NNP 10_1101-2020_01_28_923532 130 22 ) ) -RRB- 10_1101-2020_01_28_923532 130 23 . . . 10_1101-2020_01_28_923532 131 1 We -PRON- PRP 10_1101-2020_01_28_923532 131 2 solve solve VBP 10_1101-2020_01_28_923532 131 3 different different JJ 10_1101-2020_01_28_923532 131 4 optimization optimization NN 10_1101-2020_01_28_923532 131 5 problem problem NN 10_1101-2020_01_28_923532 131 6 instances instance NNS 10_1101-2020_01_28_923532 131 7 , , , 10_1101-2020_01_28_923532 131 8 each each DT 10_1101-2020_01_28_923532 131 9 of of IN 10_1101-2020_01_28_923532 131 10 which which WDT 10_1101-2020_01_28_923532 131 11 considers consider VBZ 10_1101-2020_01_28_923532 131 12 a a DT 10_1101-2020_01_28_923532 131 13 different different JJ 10_1101-2020_01_28_923532 131 14 set set NN 10_1101-2020_01_28_923532 131 15 of of IN 10_1101-2020_01_28_923532 131 16 candidate candidate NN 10_1101-2020_01_28_923532 131 17 target target NN 10_1101-2020_01_28_923532 131 18 genes gene NNS 10_1101-2020_01_28_923532 131 19 : : : 10_1101-2020_01_28_923532 131 20 1269 1269 CD 10_1101-2020_01_28_923532 131 21 genes gene NNS 10_1101-2020_01_28_923532 131 22 encoding encode VBG 10_1101-2020_01_28_923532 131 23 cell cell NN 10_1101-2020_01_28_923532 131 24 surface surface NN 10_1101-2020_01_28_923532 131 25 receptor receptor NN 10_1101-2020_01_28_923532 131 26 proteins protein NNS 10_1101-2020_01_28_923532 131 27 , , , 10_1101-2020_01_28_923532 131 28 and and CC 10_1101-2020_01_28_923532 131 29 subset subset NN 10_1101-2020_01_28_923532 131 30 of of IN 10_1101-2020_01_28_923532 131 31 58 58 CD 10_1101-2020_01_28_923532 131 32 out out IN 10_1101-2020_01_28_923532 131 33 of of IN 10_1101-2020_01_28_923532 131 34 these these DT 10_1101-2020_01_28_923532 131 35 1269 1269 CD 10_1101-2020_01_28_923532 131 36 genes gene NNS 10_1101-2020_01_28_923532 131 37 that that WDT 10_1101-2020_01_28_923532 131 38 already already RB 10_1101-2020_01_28_923532 131 39 have have VBP 10_1101-2020_01_28_923532 131 40 published publish VBN 10_1101-2020_01_28_923532 131 41 ligand- ligand- NN 10_1101-2020_01_28_923532 131 42 mimicking mimicking NN 10_1101-2020_01_28_923532 131 43 peptides peptide NNS 10_1101-2020_01_28_923532 131 44 , , , 10_1101-2020_01_28_923532 131 45 and and CC 10_1101-2020_01_28_923532 131 46 a a DT 10_1101-2020_01_28_923532 131 47 nested nest VBN 10_1101-2020_01_28_923532 131 48 collection collection NN 10_1101-2020_01_28_923532 131 49 of of IN 10_1101-2020_01_28_923532 131 50 sets set NNS 10_1101-2020_01_28_923532 131 51 of of IN 10_1101-2020_01_28_923532 131 52 424 424 CD 10_1101-2020_01_28_923532 131 53 - - SYM 10_1101-2020_01_28_923532 131 54 900 900 CD 10_1101-2020_01_28_923532 131 55 out out IN 10_1101-2020_01_28_923532 131 56 of of IN 10_1101-2020_01_28_923532 131 57 the the DT 10_1101-2020_01_28_923532 131 58 1269 1269 CD 10_1101-2020_01_28_923532 131 59 genes gene NNS 10_1101-2020_01_28_923532 131 60 that that WDT 10_1101-2020_01_28_923532 131 61 are be VBP 10_1101-2020_01_28_923532 131 62 lowly lowly RB 10_1101-2020_01_28_923532 131 63 expressed express VBN 10_1101-2020_01_28_923532 131 64 below below IN 10_1101-2020_01_28_923532 131 65 a a DT 10_1101-2020_01_28_923532 131 66 series series NN 10_1101-2020_01_28_923532 131 67 of of IN 10_1101-2020_01_28_923532 131 68 decreasing decrease VBG 10_1101-2020_01_28_923532 131 69 gene gene NN 10_1101-2020_01_28_923532 131 70 expression expression NN 10_1101-2020_01_28_923532 131 71 thresholds25 thresholds25 CD 10_1101-2020_01_28_923532 131 72 . . . 10_1101-2020_01_28_923532 132 1 From from IN 10_1101-2020_01_28_923532 132 2 a a DT 10_1101-2020_01_28_923532 132 3 computational computational JJ 10_1101-2020_01_28_923532 132 4 standpoint standpoint NN 10_1101-2020_01_28_923532 132 5 , , , 10_1101-2020_01_28_923532 132 6 there there EX 10_1101-2020_01_28_923532 132 7 is be VBZ 10_1101-2020_01_28_923532 132 8 no no DT 10_1101-2020_01_28_923532 132 9 inherent inherent JJ 10_1101-2020_01_28_923532 132 10 limit limit NN 10_1101-2020_01_28_923532 132 11 on on IN 10_1101-2020_01_28_923532 132 12 the the DT 10_1101-2020_01_28_923532 132 13 size size NN 10_1101-2020_01_28_923532 132 14 of of IN 10_1101-2020_01_28_923532 132 15 the the DT 10_1101-2020_01_28_923532 132 16 candidate candidate NN 10_1101-2020_01_28_923532 132 17 gene gene NN 10_1101-2020_01_28_923532 132 18 set set NN 10_1101-2020_01_28_923532 132 19 . . . 10_1101-2020_01_28_923532 133 1 Our -PRON- PRP$ 10_1101-2020_01_28_923532 133 2 formulation formulation NN 10_1101-2020_01_28_923532 133 3 is be VBZ 10_1101-2020_01_28_923532 133 4 personalized personalize VBN 10_1101-2020_01_28_923532 133 5 as as IN 10_1101-2020_01_28_923532 133 6 each each DT 10_1101-2020_01_28_923532 133 7 patient patient NN 10_1101-2020_01_28_923532 133 8 receives receive VBZ 10_1101-2020_01_28_923532 133 9 the the DT 10_1101-2020_01_28_923532 133 10 minimum minimum JJ 10_1101-2020_01_28_923532 133 11 possible possible JJ 10_1101-2020_01_28_923532 133 12 number number NN 10_1101-2020_01_28_923532 133 13 of of IN 10_1101-2020_01_28_923532 133 14 treatments treatment NNS 10_1101-2020_01_28_923532 133 15 . . . 10_1101-2020_01_28_923532 134 1 The the DT 10_1101-2020_01_28_923532 134 2 global global JJ 10_1101-2020_01_28_923532 134 3 optimization optimization NN 10_1101-2020_01_28_923532 134 4 comes come VBZ 10_1101-2020_01_28_923532 134 5 into into IN 10_1101-2020_01_28_923532 134 6 play play NN 10_1101-2020_01_28_923532 134 7 only only RB 10_1101-2020_01_28_923532 134 8 when when WRB 10_1101-2020_01_28_923532 134 9 there there EX 10_1101-2020_01_28_923532 134 10 are be VBP 10_1101-2020_01_28_923532 134 11 multiple multiple JJ 10_1101-2020_01_28_923532 134 12 solutions solution NNS 10_1101-2020_01_28_923532 134 13 of of IN 10_1101-2020_01_28_923532 134 14 the the DT 10_1101-2020_01_28_923532 134 15 same same JJ 10_1101-2020_01_28_923532 134 16 size size NN 10_1101-2020_01_28_923532 134 17 to to TO 10_1101-2020_01_28_923532 134 18 treat treat VB 10_1101-2020_01_28_923532 134 19 a a DT 10_1101-2020_01_28_923532 134 20 patient patient NN 10_1101-2020_01_28_923532 134 21 . . . 10_1101-2020_01_28_923532 135 1 For for IN 10_1101-2020_01_28_923532 135 2 example example NN 10_1101-2020_01_28_923532 135 3 , , , 10_1101-2020_01_28_923532 135 4 suppose suppose VB 10_1101-2020_01_28_923532 135 5 we -PRON- PRP 10_1101-2020_01_28_923532 135 6 have have VBP 10_1101-2020_01_28_923532 135 7 two two CD 10_1101-2020_01_28_923532 135 8 patients patient NNS 10_1101-2020_01_28_923532 135 9 such such JJ 10_1101-2020_01_28_923532 135 10 that that IN 10_1101-2020_01_28_923532 135 11 patient patient NN 10_1101-2020_01_28_923532 135 12 A a DT 10_1101-2020_01_28_923532 135 13 could could MD 10_1101-2020_01_28_923532 135 14 be be VB 10_1101-2020_01_28_923532 135 15 treated treat VBN 10_1101-2020_01_28_923532 135 16 by by IN 10_1101-2020_01_28_923532 135 17 targeting target VBG 10_1101-2020_01_28_923532 135 18 either either CC 10_1101-2020_01_28_923532 135 19 { { -LRB- 10_1101-2020_01_28_923532 135 20 EGFR egfr NN 10_1101-2020_01_28_923532 135 21 , , , 10_1101-2020_01_28_923532 135 22 FGFR2 FGFR2 '' 10_1101-2020_01_28_923532 135 23 } } -RRB- 10_1101-2020_01_28_923532 135 24 or or CC 10_1101-2020_01_28_923532 135 25 { { -LRB- 10_1101-2020_01_28_923532 135 26 MET MET NNP 10_1101-2020_01_28_923532 135 27 , , , 10_1101-2020_01_28_923532 135 28 FGFR2 FGFR2 '' 10_1101-2020_01_28_923532 135 29 } } -RRB- 10_1101-2020_01_28_923532 135 30 and and CC 10_1101-2020_01_28_923532 135 31 patient patient JJ 10_1101-2020_01_28_923532 135 32 B B NNP 10_1101-2020_01_28_923532 135 33 could could MD 10_1101-2020_01_28_923532 135 34 be be VB 10_1101-2020_01_28_923532 135 35 treated treat VBN 10_1101-2020_01_28_923532 135 36 by by IN 10_1101-2020_01_28_923532 135 37 targeting target VBG 10_1101-2020_01_28_923532 135 38 either either CC 10_1101-2020_01_28_923532 135 39 { { -LRB- 10_1101-2020_01_28_923532 135 40 EGFR EGFR NNP 10_1101-2020_01_28_923532 135 41 , , , 10_1101-2020_01_28_923532 135 42 CD44 CD44 NNP 10_1101-2020_01_28_923532 135 43 } } -RRB- 10_1101-2020_01_28_923532 135 44 or or CC 10_1101-2020_01_28_923532 135 45 { { -LRB- 10_1101-2020_01_28_923532 135 46 ANPEP anpep NN 10_1101-2020_01_28_923532 135 47 , , , 10_1101-2020_01_28_923532 135 48 CD44 CD44 NNP 10_1101-2020_01_28_923532 135 49 } } -RRB- 10_1101-2020_01_28_923532 135 50 . . . 10_1101-2020_01_28_923532 136 1 Then then RB 10_1101-2020_01_28_923532 136 2 we -PRON- PRP 10_1101-2020_01_28_923532 136 3 prefer prefer VBP 10_1101-2020_01_28_923532 136 4 the the DT 10_1101-2020_01_28_923532 136 5 CTS CTS NNP 10_1101-2020_01_28_923532 136 6 { { -LRB- 10_1101-2020_01_28_923532 136 7 EGFR EGFR NNP 10_1101-2020_01_28_923532 136 8 , , , 10_1101-2020_01_28_923532 136 9 FGFR2 FGFR2 '' 10_1101-2020_01_28_923532 136 10 , , , 10_1101-2020_01_28_923532 136 11 CD44 CD44 NNP 10_1101-2020_01_28_923532 136 12 } } -RRB- 10_1101-2020_01_28_923532 136 13 of of IN 10_1101-2020_01_28_923532 136 14 size size NN 10_1101-2020_01_28_923532 136 15 3 3 CD 10_1101-2020_01_28_923532 136 16 and and CC 10_1101-2020_01_28_923532 136 17 we -PRON- PRP 10_1101-2020_01_28_923532 136 18 treat treat VBP 10_1101-2020_01_28_923532 136 19 patient patient JJ 10_1101-2020_01_28_923532 136 20 A A NNP 10_1101-2020_01_28_923532 136 21 by by IN 10_1101-2020_01_28_923532 136 22 targeting target VBG 10_1101-2020_01_28_923532 136 23 { { -LRB- 10_1101-2020_01_28_923532 136 24 EGFR egfr NN 10_1101-2020_01_28_923532 136 25 , , , 10_1101-2020_01_28_923532 136 26 FGFR2 FGFR2 '' 10_1101-2020_01_28_923532 136 27 } } -RRB- 10_1101-2020_01_28_923532 136 28 and and CC 10_1101-2020_01_28_923532 136 29 patient patient JJ 10_1101-2020_01_28_923532 136 30 B b NN 10_1101-2020_01_28_923532 136 31 by by IN 10_1101-2020_01_28_923532 136 32 targeting target VBG 10_1101-2020_01_28_923532 136 33 { { -LRB- 10_1101-2020_01_28_923532 136 34 EGFR EGFR NNP 10_1101-2020_01_28_923532 136 35 , , , 10_1101-2020_01_28_923532 136 36 CD44 CD44 NNP 10_1101-2020_01_28_923532 136 37 } } -RRB- 10_1101-2020_01_28_923532 136 38 . . . 10_1101-2020_01_28_923532 137 1 As as IN 10_1101-2020_01_28_923532 137 2 the the DT 10_1101-2020_01_28_923532 137 3 number number NN 10_1101-2020_01_28_923532 137 4 of of IN 10_1101-2020_01_28_923532 137 5 cells cell NNS 10_1101-2020_01_28_923532 137 6 per per IN 10_1101-2020_01_28_923532 137 7 patient patient JJ 10_1101-2020_01_28_923532 137 8 varies varie NNS 10_1101-2020_01_28_923532 137 9 by by IN 10_1101-2020_01_28_923532 137 10 three three CD 10_1101-2020_01_28_923532 137 11 orders order NNS 10_1101-2020_01_28_923532 137 12 of of IN 10_1101-2020_01_28_923532 137 13 magnitude magnitude NN 10_1101-2020_01_28_923532 137 14 across across IN 10_1101-2020_01_28_923532 137 15 data data NN 10_1101-2020_01_28_923532 137 16 sets set NNS 10_1101-2020_01_28_923532 137 17 , , , 10_1101-2020_01_28_923532 137 18 we -PRON- PRP 10_1101-2020_01_28_923532 137 19 use use VBP 10_1101-2020_01_28_923532 137 20 random random JJ 10_1101-2020_01_28_923532 137 21 sampling sampling NN 10_1101-2020_01_28_923532 137 22 to to TO 10_1101-2020_01_28_923532 137 23 obtain obtain VB 10_1101-2020_01_28_923532 137 24 hitting hit VBG 10_1101-2020_01_28_923532 137 25 set set VBN 10_1101-2020_01_28_923532 137 26 instances instance NNS 10_1101-2020_01_28_923532 137 27 of of IN 10_1101-2020_01_28_923532 137 28 comparable comparable JJ 10_1101-2020_01_28_923532 137 29 sizes size NNS 10_1101-2020_01_28_923532 137 30 and and CC 10_1101-2020_01_28_923532 137 31 yet yet CC 10_1101-2020_01_28_923532 137 32 adequately adequately RB 10_1101-2020_01_28_923532 137 33 capture capture VB 10_1101-2020_01_28_923532 137 34 tumor tumor NN 10_1101-2020_01_28_923532 137 35 heterogeneity heterogeneity NN 10_1101-2020_01_28_923532 137 36 . . . 10_1101-2020_01_28_923532 138 1 We -PRON- PRP 10_1101-2020_01_28_923532 138 2 found find VBD 10_1101-2020_01_28_923532 138 3 that that IN 10_1101-2020_01_28_923532 138 4 sampling sample VBG 10_1101-2020_01_28_923532 138 5 hundreds hundred NNS 10_1101-2020_01_28_923532 138 6 of of IN 10_1101-2020_01_28_923532 138 7 cells cell NNS 10_1101-2020_01_28_923532 138 8 from from IN 10_1101-2020_01_28_923532 138 9 the the DT 10_1101-2020_01_28_923532 138 10 tumor tumor NN 10_1101-2020_01_28_923532 138 11 is be VBZ 10_1101-2020_01_28_923532 138 12 sufficient sufficient JJ 10_1101-2020_01_28_923532 138 13 to to TO 10_1101-2020_01_28_923532 138 14 get get VB 10_1101-2020_01_28_923532 138 15 enough enough JJ 10_1101-2020_01_28_923532 138 16 data datum NNS 10_1101-2020_01_28_923532 138 17 to to TO 10_1101-2020_01_28_923532 138 18 represent represent VB 10_1101-2020_01_28_923532 138 19 all all DT 10_1101-2020_01_28_923532 138 20 cells cell NNS 10_1101-2020_01_28_923532 138 21 . . . 10_1101-2020_01_28_923532 139 1 In in IN 10_1101-2020_01_28_923532 139 2 most most JJS 10_1101-2020_01_28_923532 139 3 of of IN 10_1101-2020_01_28_923532 139 4 the the DT 10_1101-2020_01_28_923532 139 5 experiments experiment NNS 10_1101-2020_01_28_923532 139 6 shown show VBN 10_1101-2020_01_28_923532 139 7 , , , 10_1101-2020_01_28_923532 139 8 the the DT 10_1101-2020_01_28_923532 139 9 number number NN 10_1101-2020_01_28_923532 139 10 of of IN 10_1101-2020_01_28_923532 139 11 cells cell NNS 10_1101-2020_01_28_923532 139 12 sampled sample VBN 10_1101-2020_01_28_923532 139 13 , , , 10_1101-2020_01_28_923532 139 14 which which WDT 10_1101-2020_01_28_923532 139 15 we -PRON- PRP 10_1101-2020_01_28_923532 139 16 denote denote VBP 10_1101-2020_01_28_923532 139 17 by by IN 10_1101-2020_01_28_923532 139 18 𝑐 𝑐 NNP 10_1101-2020_01_28_923532 139 19 , , , 10_1101-2020_01_28_923532 139 20 was be VBD 10_1101-2020_01_28_923532 139 21 500 500 CD 10_1101-2020_01_28_923532 139 22 . . . 10_1101-2020_01_28_923532 140 1 In in IN 10_1101-2020_01_28_923532 140 2 some some DT 10_1101-2020_01_28_923532 140 3 smaller small JJR 10_1101-2020_01_28_923532 140 4 data data NN 10_1101-2020_01_28_923532 140 5 sets set NNS 10_1101-2020_01_28_923532 140 6 , , , 10_1101-2020_01_28_923532 140 7 we -PRON- PRP 10_1101-2020_01_28_923532 140 8 had have VBD 10_1101-2020_01_28_923532 140 9 to to TO 10_1101-2020_01_28_923532 140 10 sample sample VB 10_1101-2020_01_28_923532 140 11 smaller small JJR 10_1101-2020_01_28_923532 140 12 numbers number NNS 10_1101-2020_01_28_923532 140 13 of of IN 10_1101-2020_01_28_923532 140 14 cells cell NNS 10_1101-2020_01_28_923532 140 15 ( ( -LRB- 10_1101-2020_01_28_923532 140 16 Methods Methods NNP 10_1101-2020_01_28_923532 140 17 ) ) -RRB- 10_1101-2020_01_28_923532 140 18 . . . 10_1101-2020_01_28_923532 141 1 As as IN 10_1101-2020_01_28_923532 141 2 shown show VBN 10_1101-2020_01_28_923532 141 3 in in IN 10_1101-2020_01_28_923532 141 4 ( ( -LRB- 10_1101-2020_01_28_923532 141 5 Supplementary Supplementary NNP 10_1101-2020_01_28_923532 141 6 Materials material NNS 10_1101-2020_01_28_923532 141 7 2 2 CD 10_1101-2020_01_28_923532 141 8 , , , 10_1101-2020_01_28_923532 141 9 Figures Figures NNP 10_1101-2020_01_28_923532 141 10 S1-S2 S1-S2 NNP 10_1101-2020_01_28_923532 141 11 ) ) -RRB- 10_1101-2020_01_28_923532 141 12 , , , 10_1101-2020_01_28_923532 141 13 500 500 CD 10_1101-2020_01_28_923532 141 14 cells cell NNS 10_1101-2020_01_28_923532 141 15 , , , 10_1101-2020_01_28_923532 141 16 when when WRB 10_1101-2020_01_28_923532 141 17 available available JJ 10_1101-2020_01_28_923532 141 18 , , , 10_1101-2020_01_28_923532 141 19 are be VBP 10_1101-2020_01_28_923532 141 20 roughly roughly RB 10_1101-2020_01_28_923532 141 21 sufficient sufficient JJ 10_1101-2020_01_28_923532 141 22 for for IN 10_1101-2020_01_28_923532 141 23 CTS CTS NNP 10_1101-2020_01_28_923532 141 24 size size NN 10_1101-2020_01_28_923532 141 25 to to IN 10_1101-2020_01_28_923532 141 26 plateau plateau NN 10_1101-2020_01_28_923532 141 27 for for IN 10_1101-2020_01_28_923532 141 28 our -PRON- PRP$ 10_1101-2020_01_28_923532 141 29 baseline baseline JJ 10_1101-2020_01_28_923532 141 30 parameter parameter NN 10_1101-2020_01_28_923532 141 31 settings setting NNS 10_1101-2020_01_28_923532 141 32 , , , 10_1101-2020_01_28_923532 141 33 𝑙𝑏 𝑙𝑏 NNP 10_1101-2020_01_28_923532 141 34 = = SYM 10_1101-2020_01_28_923532 141 35 0.8 0.8 CD 10_1101-2020_01_28_923532 141 36 , , , 10_1101-2020_01_28_923532 141 37 𝑢𝑏 𝑢𝑏 NNP 10_1101-2020_01_28_923532 141 38 = = SYM 10_1101-2020_01_28_923532 141 39 0.1 0.1 CD 10_1101-2020_01_28_923532 141 40 , , , 10_1101-2020_01_28_923532 141 41 𝑟 𝑟 NNP 10_1101-2020_01_28_923532 141 42 = = SYM 10_1101-2020_01_28_923532 141 43 2.0 2.0 CD 10_1101-2020_01_28_923532 141 44 . . . 10_1101-2020_01_28_923532 142 1 For for IN 10_1101-2020_01_28_923532 142 2 each each DT 10_1101-2020_01_28_923532 142 3 individual individual NN 10_1101-2020_01_28_923532 142 4 within within IN 10_1101-2020_01_28_923532 142 5 a a DT 10_1101-2020_01_28_923532 142 6 data data NN 10_1101-2020_01_28_923532 142 7 set set NN 10_1101-2020_01_28_923532 142 8 , , , 10_1101-2020_01_28_923532 142 9 we -PRON- PRP 10_1101-2020_01_28_923532 142 10 performed perform VBD 10_1101-2020_01_28_923532 142 11 independent independent JJ 10_1101-2020_01_28_923532 142 12 sampling sampling NN 10_1101-2020_01_28_923532 142 13 of of IN 10_1101-2020_01_28_923532 142 14 c c NNP 10_1101-2020_01_28_923532 142 15 cells cell NNS 10_1101-2020_01_28_923532 142 16 20 20 CD 10_1101-2020_01_28_923532 142 17 times time NNS 10_1101-2020_01_28_923532 142 18 and and CC 10_1101-2020_01_28_923532 142 19 their -PRON- PRP$ 10_1101-2020_01_28_923532 142 20 results result NNS 10_1101-2020_01_28_923532 142 21 were be VBD 10_1101-2020_01_28_923532 142 22 summarized summarize VBN 10_1101-2020_01_28_923532 142 23 . . . 10_1101-2020_01_28_923532 143 1 105 105 CD 10_1101-2020_01_28_923532 143 2 and and CC 10_1101-2020_01_28_923532 143 3 is be VBZ 10_1101-2020_01_28_923532 143 4 also also RB 10_1101-2020_01_28_923532 143 5 made make VBN 10_1101-2020_01_28_923532 143 6 available available JJ 10_1101-2020_01_28_923532 143 7 for for IN 10_1101-2020_01_28_923532 143 8 use use NN 10_1101-2020_01_28_923532 143 9 under under IN 10_1101-2020_01_28_923532 143 10 a a DT 10_1101-2020_01_28_923532 143 11 CC0 CC0 NNP 10_1101-2020_01_28_923532 143 12 license license NN 10_1101-2020_01_28_923532 143 13 . . . 10_1101-2020_01_28_923532 144 1 ( ( -LRB- 10_1101-2020_01_28_923532 144 2 which which WDT 10_1101-2020_01_28_923532 144 3 was be VBD 10_1101-2020_01_28_923532 144 4 not not RB 10_1101-2020_01_28_923532 144 5 certified certify VBN 10_1101-2020_01_28_923532 144 6 by by IN 10_1101-2020_01_28_923532 144 7 peer peer NN 10_1101-2020_01_28_923532 144 8 review review NN 10_1101-2020_01_28_923532 144 9 ) ) -RRB- 10_1101-2020_01_28_923532 144 10 is be VBZ 10_1101-2020_01_28_923532 144 11 the the DT 10_1101-2020_01_28_923532 144 12 author author NN 10_1101-2020_01_28_923532 144 13 / / SYM 10_1101-2020_01_28_923532 144 14 funder funder NN 10_1101-2020_01_28_923532 144 15 . . . 10_1101-2020_01_28_923532 145 1 This this DT 10_1101-2020_01_28_923532 145 2 article article NN 10_1101-2020_01_28_923532 145 3 is be VBZ 10_1101-2020_01_28_923532 145 4 a a DT 10_1101-2020_01_28_923532 145 5 US US NNP 10_1101-2020_01_28_923532 145 6 Government Government NNP 10_1101-2020_01_28_923532 145 7 work work NN 10_1101-2020_01_28_923532 145 8 . . . 10_1101-2020_01_28_923532 146 1 It -PRON- PRP 10_1101-2020_01_28_923532 146 2 is be VBZ 10_1101-2020_01_28_923532 146 3 not not RB 10_1101-2020_01_28_923532 146 4 subject subject JJ 10_1101-2020_01_28_923532 146 5 to to IN 10_1101-2020_01_28_923532 146 6 copyright copyright NN 10_1101-2020_01_28_923532 146 7 under under IN 10_1101-2020_01_28_923532 146 8 17 17 CD 10_1101-2020_01_28_923532 146 9 USC usc NN 10_1101-2020_01_28_923532 146 10 The the DT 10_1101-2020_01_28_923532 146 11 copyright copyright NN 10_1101-2020_01_28_923532 146 12 holder holder NN 10_1101-2020_01_28_923532 146 13 for for IN 10_1101-2020_01_28_923532 146 14 this this DT 10_1101-2020_01_28_923532 146 15 preprintthis preprintthis NN 10_1101-2020_01_28_923532 146 16 version version NN 10_1101-2020_01_28_923532 146 17 posted post VBD 10_1101-2020_01_28_923532 146 18 February February NNP 10_1101-2020_01_28_923532 146 19 12 12 CD 10_1101-2020_01_28_923532 146 20 , , , 10_1101-2020_01_28_923532 146 21 2021 2021 CD 10_1101-2020_01_28_923532 146 22 . . . 10_1101-2020_01_28_923532 146 23 ; ; : 10_1101-2020_01_28_923532 146 24 https://doi.org/10.1101/2020.01.28.923532doi https://doi.org/10.1101/2020.01.28.923532doi ADD 10_1101-2020_01_28_923532 146 25 : : : 10_1101-2020_01_28_923532 146 26 bioRxiv biorxiv VB 10_1101-2020_01_28_923532 146 27 preprint preprint NN 10_1101-2020_01_28_923532 146 28 https://doi.org/10.1101/2020.01.28.923532 https://doi.org/10.1101/2020.01.28.923532 UH 10_1101-2020_01_28_923532 146 29 12 12 CD 10_1101-2020_01_28_923532 146 30 Cohort Cohort NNP 10_1101-2020_01_28_923532 146 31 and and CC 10_1101-2020_01_28_923532 146 32 Individual Individual NNP 10_1101-2020_01_28_923532 146 33 Target Target NNP 10_1101-2020_01_28_923532 146 34 Set Set NNP 10_1101-2020_01_28_923532 146 35 Sizes size NNS 10_1101-2020_01_28_923532 146 36 as as IN 10_1101-2020_01_28_923532 146 37 Functions function NNS 10_1101-2020_01_28_923532 146 38 of of IN 10_1101-2020_01_28_923532 146 39 Tumor Tumor NNP 10_1101-2020_01_28_923532 146 40 Killing Killing NNP 10_1101-2020_01_28_923532 146 41 and and CC 10_1101-2020_01_28_923532 146 42 Non Non NNP 10_1101-2020_01_28_923532 146 43 - - JJ 10_1101-2020_01_28_923532 146 44 Tumor tumor JJ 10_1101-2020_01_28_923532 146 45 Sparing Sparing NNP 10_1101-2020_01_28_923532 146 46 Goals Goals NNPS 10_1101-2020_01_28_923532 146 47 Given give VBN 10_1101-2020_01_28_923532 146 48 the the DT 10_1101-2020_01_28_923532 146 49 single single JJ 10_1101-2020_01_28_923532 146 50 - - HYPH 10_1101-2020_01_28_923532 146 51 cell cell NN 10_1101-2020_01_28_923532 146 52 tumor tumor NN 10_1101-2020_01_28_923532 146 53 data datum NNS 10_1101-2020_01_28_923532 146 54 sets set NNS 10_1101-2020_01_28_923532 146 55 and and CC 10_1101-2020_01_28_923532 146 56 the the DT 10_1101-2020_01_28_923532 146 57 ILP ILP NNP 10_1101-2020_01_28_923532 146 58 optimization optimization NN 10_1101-2020_01_28_923532 146 59 framework framework NN 10_1101-2020_01_28_923532 146 60 described describe VBN 10_1101-2020_01_28_923532 146 61 above above RB 10_1101-2020_01_28_923532 146 62 , , , 10_1101-2020_01_28_923532 146 63 we -PRON- PRP 10_1101-2020_01_28_923532 146 64 first first RB 10_1101-2020_01_28_923532 146 65 studied study VBD 10_1101-2020_01_28_923532 146 66 how how WRB 10_1101-2020_01_28_923532 146 67 the the DT 10_1101-2020_01_28_923532 146 68 resulting result VBG 10_1101-2020_01_28_923532 146 69 optimal optimal JJ 10_1101-2020_01_28_923532 146 70 cohort cohort NN 10_1101-2020_01_28_923532 146 71 target target NN 10_1101-2020_01_28_923532 146 72 set set VBN 10_1101-2020_01_28_923532 146 73 ( ( -LRB- 10_1101-2020_01_28_923532 146 74 CTS CTS NNP 10_1101-2020_01_28_923532 146 75 ) ) -RRB- 10_1101-2020_01_28_923532 146 76 may may MD 10_1101-2020_01_28_923532 146 77 vary vary VB 10_1101-2020_01_28_923532 146 78 as as IN 10_1101-2020_01_28_923532 146 79 a a DT 10_1101-2020_01_28_923532 146 80 function function NN 10_1101-2020_01_28_923532 146 81 of of IN 10_1101-2020_01_28_923532 146 82 the the DT 10_1101-2020_01_28_923532 146 83 parameters parameter NNS 10_1101-2020_01_28_923532 146 84 defining define VBG 10_1101-2020_01_28_923532 146 85 the the DT 10_1101-2020_01_28_923532 146 86 optimization optimization NN 10_1101-2020_01_28_923532 146 87 objectives objective NNS 10_1101-2020_01_28_923532 146 88 in in IN 10_1101-2020_01_28_923532 146 89 different different JJ 10_1101-2020_01_28_923532 146 90 cancer cancer NN 10_1101-2020_01_28_923532 146 91 types type NNS 10_1101-2020_01_28_923532 146 92 . . . 10_1101-2020_01_28_923532 147 1 Figures figure NNS 10_1101-2020_01_28_923532 147 2 3 3 CD 10_1101-2020_01_28_923532 147 3 and and CC 10_1101-2020_01_28_923532 147 4 S3-S7 S3-S7 NNP 10_1101-2020_01_28_923532 147 5 in in IN 10_1101-2020_01_28_923532 147 6 Supplementary Supplementary NNP 10_1101-2020_01_28_923532 147 7 Materials material NNS 10_1101-2020_01_28_923532 147 8 3 3 CD 10_1101-2020_01_28_923532 147 9 show show VBP 10_1101-2020_01_28_923532 147 10 heatmaps heatmap NNS 10_1101-2020_01_28_923532 147 11 of of IN 10_1101-2020_01_28_923532 147 12 CTS CTS NNP 10_1101-2020_01_28_923532 147 13 sizes size NNS 10_1101-2020_01_28_923532 147 14 when when WRB 10_1101-2020_01_28_923532 147 15 varying vary VBG 10_1101-2020_01_28_923532 147 16 lb lb RB 10_1101-2020_01_28_923532 147 17 , , , 10_1101-2020_01_28_923532 147 18 ub ub NNP 10_1101-2020_01_28_923532 147 19 , , , 10_1101-2020_01_28_923532 147 20 and and CC 10_1101-2020_01_28_923532 147 21 r r LS 10_1101-2020_01_28_923532 147 22 around around IN 10_1101-2020_01_28_923532 147 23 the the DT 10_1101-2020_01_28_923532 147 24 baseline baseline JJ 10_1101-2020_01_28_923532 147 25 values value NNS 10_1101-2020_01_28_923532 147 26 of of IN 10_1101-2020_01_28_923532 147 27 0.8 0.8 CD 10_1101-2020_01_28_923532 147 28 , , , 10_1101-2020_01_28_923532 147 29 0.1 0.1 CD 10_1101-2020_01_28_923532 147 30 , , , 10_1101-2020_01_28_923532 147 31 and and CC 10_1101-2020_01_28_923532 147 32 2.0 2.0 CD 10_1101-2020_01_28_923532 147 33 , , , 10_1101-2020_01_28_923532 147 34 respectively respectively RB 10_1101-2020_01_28_923532 147 35 . . . 10_1101-2020_01_28_923532 148 1 The the DT 10_1101-2020_01_28_923532 148 2 CTS CTS NNP 10_1101-2020_01_28_923532 148 3 sizes size VBZ 10_1101-2020_01_28_923532 148 4 for for IN 10_1101-2020_01_28_923532 148 5 melanoma melanoma NNP 10_1101-2020_01_28_923532 148 6 were be VBD 10_1101-2020_01_28_923532 148 7 largest large JJS 10_1101-2020_01_28_923532 148 8 , , , 10_1101-2020_01_28_923532 148 9 partly partly RB 10_1101-2020_01_28_923532 148 10 due due JJ 10_1101-2020_01_28_923532 148 11 to to IN 10_1101-2020_01_28_923532 148 12 the the DT 10_1101-2020_01_28_923532 148 13 larger large JJR 10_1101-2020_01_28_923532 148 14 number number NN 10_1101-2020_01_28_923532 148 15 of of IN 10_1101-2020_01_28_923532 148 16 patients patient NNS 10_1101-2020_01_28_923532 148 17 in in IN 10_1101-2020_01_28_923532 148 18 that that DT 10_1101-2020_01_28_923532 148 19 data data NN 10_1101-2020_01_28_923532 148 20 set set NN 10_1101-2020_01_28_923532 148 21 ( ( -LRB- 10_1101-2020_01_28_923532 148 22 Table table NN 10_1101-2020_01_28_923532 148 23 1 1 CD 10_1101-2020_01_28_923532 148 24 ) ) -RRB- 10_1101-2020_01_28_923532 148 25 . . . 10_1101-2020_01_28_923532 149 1 Indeed indeed RB 10_1101-2020_01_28_923532 149 2 , , , 10_1101-2020_01_28_923532 149 3 as as IN 10_1101-2020_01_28_923532 149 4 we -PRON- PRP 10_1101-2020_01_28_923532 149 5 sampled sample VBD 10_1101-2020_01_28_923532 149 6 subsets subset NNS 10_1101-2020_01_28_923532 149 7 of of IN 10_1101-2020_01_28_923532 149 8 5 5 CD 10_1101-2020_01_28_923532 149 9 or or CC 10_1101-2020_01_28_923532 149 10 10 10 CD 10_1101-2020_01_28_923532 149 11 patients patient NNS 10_1101-2020_01_28_923532 149 12 uniformly uniformly JJ 10_1101-2020_01_28_923532 149 13 and and CC 10_1101-2020_01_28_923532 149 14 observed observe VBD 10_1101-2020_01_28_923532 149 15 that that IN 10_1101-2020_01_28_923532 149 16 the the DT 10_1101-2020_01_28_923532 149 17 mean mean JJ 10_1101-2020_01_28_923532 149 18 CTS CTS NNP 10_1101-2020_01_28_923532 149 19 sizes size NNS 10_1101-2020_01_28_923532 149 20 grew grow VBD 10_1101-2020_01_28_923532 149 21 from from IN 10_1101-2020_01_28_923532 149 22 7.9 7.9 CD 10_1101-2020_01_28_923532 149 23 ( ( -LRB- 10_1101-2020_01_28_923532 149 24 5 5 CD 10_1101-2020_01_28_923532 149 25 patient patient JJ 10_1101-2020_01_28_923532 149 26 subsets subset NNS 10_1101-2020_01_28_923532 149 27 ) ) -RRB- 10_1101-2020_01_28_923532 149 28 to to IN 10_1101-2020_01_28_923532 149 29 12.3 12.3 CD 10_1101-2020_01_28_923532 149 30 ( ( -LRB- 10_1101-2020_01_28_923532 149 31 10 10 CD 10_1101-2020_01_28_923532 149 32 patient patient JJ 10_1101-2020_01_28_923532 149 33 subsets subset NNS 10_1101-2020_01_28_923532 149 34 ) ) -RRB- 10_1101-2020_01_28_923532 149 35 to to IN 10_1101-2020_01_28_923532 149 36 31.0 31.0 CD 10_1101-2020_01_28_923532 149 37 ( ( -LRB- 10_1101-2020_01_28_923532 149 38 all all DT 10_1101-2020_01_28_923532 149 39 patients patient NNS 10_1101-2020_01_28_923532 149 40 , , , 10_1101-2020_01_28_923532 149 41 as as IN 10_1101-2020_01_28_923532 149 42 shown show VBN 10_1101-2020_01_28_923532 149 43 in in IN 10_1101-2020_01_28_923532 149 44 Figure Figure NNP 10_1101-2020_01_28_923532 149 45 3 3 CD 10_1101-2020_01_28_923532 149 46 ) ) -RRB- 10_1101-2020_01_28_923532 149 47 . . . 10_1101-2020_01_28_923532 150 1 Encouragingly encouragingly RB 10_1101-2020_01_28_923532 150 2 , , , 10_1101-2020_01_28_923532 150 3 for for IN 10_1101-2020_01_28_923532 150 4 most most JJS 10_1101-2020_01_28_923532 150 5 data data NN 10_1101-2020_01_28_923532 150 6 sets set NNS 10_1101-2020_01_28_923532 150 7 and and CC 10_1101-2020_01_28_923532 150 8 parameter parameter NN 10_1101-2020_01_28_923532 150 9 settings setting NNS 10_1101-2020_01_28_923532 150 10 , , , 10_1101-2020_01_28_923532 150 11 the the DT 10_1101-2020_01_28_923532 150 12 optimal optimal JJ 10_1101-2020_01_28_923532 150 13 CTS CTS NNP 10_1101-2020_01_28_923532 150 14 sizes size NNS 10_1101-2020_01_28_923532 150 15 are be VBP 10_1101-2020_01_28_923532 150 16 in in IN 10_1101-2020_01_28_923532 150 17 the the DT 10_1101-2020_01_28_923532 150 18 single single JJ 10_1101-2020_01_28_923532 150 19 digits digit NNS 10_1101-2020_01_28_923532 150 20 . . . 10_1101-2020_01_28_923532 151 1 However however RB 10_1101-2020_01_28_923532 151 2 , , , 10_1101-2020_01_28_923532 151 3 in in IN 10_1101-2020_01_28_923532 151 4 several several JJ 10_1101-2020_01_28_923532 151 5 data data NN 10_1101-2020_01_28_923532 151 6 sets set NNS 10_1101-2020_01_28_923532 151 7 , , , 10_1101-2020_01_28_923532 151 8 we -PRON- PRP 10_1101-2020_01_28_923532 151 9 observe observe VBP 10_1101-2020_01_28_923532 151 10 a a DT 10_1101-2020_01_28_923532 151 11 sharp sharp JJ 10_1101-2020_01_28_923532 151 12 increase increase NN 10_1101-2020_01_28_923532 151 13 in in IN 10_1101-2020_01_28_923532 151 14 CTS CTS NNP 10_1101-2020_01_28_923532 151 15 size size NN 10_1101-2020_01_28_923532 151 16 as as IN 10_1101-2020_01_28_923532 151 17 𝑙𝑏 𝑙𝑏 NNP 10_1101-2020_01_28_923532 151 18 values value NNS 10_1101-2020_01_28_923532 151 19 are be VBP 10_1101-2020_01_28_923532 151 20 increased increase VBN 10_1101-2020_01_28_923532 151 21 above above IN 10_1101-2020_01_28_923532 151 22 0.8 0.8 CD 10_1101-2020_01_28_923532 151 23 and/or and/or CC 10_1101-2020_01_28_923532 151 24 as as IN 10_1101-2020_01_28_923532 151 25 the the DT 10_1101-2020_01_28_923532 151 26 𝑢𝑏 𝑢𝑏 NN 10_1101-2020_01_28_923532 151 27 is be VBZ 10_1101-2020_01_28_923532 151 28 decreased decrease VBN 10_1101-2020_01_28_923532 151 29 below below IN 10_1101-2020_01_28_923532 151 30 0.1 0.1 CD 10_1101-2020_01_28_923532 151 31 , , , 10_1101-2020_01_28_923532 151 32 with with IN 10_1101-2020_01_28_923532 151 33 a a DT 10_1101-2020_01_28_923532 151 34 more more RBR 10_1101-2020_01_28_923532 151 35 pronounced pronounced JJ 10_1101-2020_01_28_923532 151 36 effect effect NN 10_1101-2020_01_28_923532 151 37 of of IN 10_1101-2020_01_28_923532 151 38 varying vary VBG 10_1101-2020_01_28_923532 151 39 𝑙𝑏. 𝑙𝑏. NN 10_1101-2020_01_28_923532 152 1 This this DT 10_1101-2020_01_28_923532 152 2 transition transition NN 10_1101-2020_01_28_923532 152 3 is be VBZ 10_1101-2020_01_28_923532 152 4 more more RBR 10_1101-2020_01_28_923532 152 5 discernable discernable JJ 10_1101-2020_01_28_923532 152 6 at at IN 10_1101-2020_01_28_923532 152 7 the the DT 10_1101-2020_01_28_923532 152 8 lowest low JJS 10_1101-2020_01_28_923532 152 9 value value NN 10_1101-2020_01_28_923532 152 10 of of IN 10_1101-2020_01_28_923532 152 11 𝑟 𝑟 NN 10_1101-2020_01_28_923532 152 12 ( ( -LRB- 10_1101-2020_01_28_923532 152 13 1.5 1.5 CD 10_1101-2020_01_28_923532 152 14 ) ) -RRB- 10_1101-2020_01_28_923532 152 15 , , , 10_1101-2020_01_28_923532 152 16 probably probably RB 10_1101-2020_01_28_923532 152 17 because because IN 10_1101-2020_01_28_923532 152 18 when when WRB 10_1101-2020_01_28_923532 152 19 𝑟 𝑟 NNP 10_1101-2020_01_28_923532 152 20 is be VBZ 10_1101-2020_01_28_923532 152 21 lower low JJR 10_1101-2020_01_28_923532 152 22 , , , 10_1101-2020_01_28_923532 152 23 it -PRON- PRP 10_1101-2020_01_28_923532 152 24 becomes become VBZ 10_1101-2020_01_28_923532 152 25 harder hard JJR 10_1101-2020_01_28_923532 152 26 to to TO 10_1101-2020_01_28_923532 152 27 find find VB 10_1101-2020_01_28_923532 152 28 genes gene NNS 10_1101-2020_01_28_923532 152 29 that that WDT 10_1101-2020_01_28_923532 152 30 are be VBP 10_1101-2020_01_28_923532 152 31 individually individually RB 10_1101-2020_01_28_923532 152 32 selective selective JJ 10_1101-2020_01_28_923532 152 33 in in IN 10_1101-2020_01_28_923532 152 34 killing kill VBG 10_1101-2020_01_28_923532 152 35 tumor tumor NN 10_1101-2020_01_28_923532 152 36 cells cell NNS 10_1101-2020_01_28_923532 152 37 and and CC 10_1101-2020_01_28_923532 152 38 sparing spare VBG 10_1101-2020_01_28_923532 152 39 non non JJ 10_1101-2020_01_28_923532 152 40 - - JJ 10_1101-2020_01_28_923532 152 41 tumor tumor JJ 10_1101-2020_01_28_923532 152 42 cells cell NNS 10_1101-2020_01_28_923532 152 43 ( ( -LRB- 10_1101-2020_01_28_923532 152 44 Supplementary Supplementary NNP 10_1101-2020_01_28_923532 152 45 Figures Figures NNPS 10_1101-2020_01_28_923532 152 46 S3-S7 S3-S7 NNP 10_1101-2020_01_28_923532 152 47 ) ) -RRB- 10_1101-2020_01_28_923532 152 48 . . . 10_1101-2020_01_28_923532 153 1 The the DT 10_1101-2020_01_28_923532 153 2 qualitative qualitative JJ 10_1101-2020_01_28_923532 153 3 transition transition NN 10_1101-2020_01_28_923532 153 4 observed observe VBN 10_1101-2020_01_28_923532 153 5 in in IN 10_1101-2020_01_28_923532 153 6 CTS CTS NNP 10_1101-2020_01_28_923532 153 7 sizes size NNS 10_1101-2020_01_28_923532 153 8 occurs occur VBZ 10_1101-2020_01_28_923532 153 9 robustly robustly RB 10_1101-2020_01_28_923532 153 10 regardless regardless RB 10_1101-2020_01_28_923532 153 11 of of IN 10_1101-2020_01_28_923532 153 12 the the DT 10_1101-2020_01_28_923532 153 13 threshold threshold NN 10_1101-2020_01_28_923532 153 14 for for IN 10_1101-2020_01_28_923532 153 15 filtering filter VBG 10_1101-2020_01_28_923532 153 16 out out RP 10_1101-2020_01_28_923532 153 17 low low JJ 10_1101-2020_01_28_923532 153 18 expressing express VBG 10_1101-2020_01_28_923532 153 19 cells cell NNS 10_1101-2020_01_28_923532 153 20 when when WRB 10_1101-2020_01_28_923532 153 21 preprocessing preprocesse VBG 10_1101-2020_01_28_923532 153 22 the the DT 10_1101-2020_01_28_923532 153 23 data datum NNS 10_1101-2020_01_28_923532 153 24 ( ( -LRB- 10_1101-2020_01_28_923532 153 25 Supplementary Supplementary NNP 10_1101-2020_01_28_923532 153 26 Materials Materials NNP 10_1101-2020_01_28_923532 153 27 4 4 CD 10_1101-2020_01_28_923532 153 28 , , , 10_1101-2020_01_28_923532 153 29 Figures Figures NNPS 10_1101-2020_01_28_923532 153 30 S8-S10 S8-S10 NNP 10_1101-2020_01_28_923532 153 31 ) ) -RRB- 10_1101-2020_01_28_923532 153 32 . . . 10_1101-2020_01_28_923532 154 1 105 105 CD 10_1101-2020_01_28_923532 154 2 and and CC 10_1101-2020_01_28_923532 154 3 is be VBZ 10_1101-2020_01_28_923532 154 4 also also RB 10_1101-2020_01_28_923532 154 5 made make VBN 10_1101-2020_01_28_923532 154 6 available available JJ 10_1101-2020_01_28_923532 154 7 for for IN 10_1101-2020_01_28_923532 154 8 use use NN 10_1101-2020_01_28_923532 154 9 under under IN 10_1101-2020_01_28_923532 154 10 a a DT 10_1101-2020_01_28_923532 154 11 CC0 CC0 NNP 10_1101-2020_01_28_923532 154 12 license license NN 10_1101-2020_01_28_923532 154 13 . . . 10_1101-2020_01_28_923532 155 1 ( ( -LRB- 10_1101-2020_01_28_923532 155 2 which which WDT 10_1101-2020_01_28_923532 155 3 was be VBD 10_1101-2020_01_28_923532 155 4 not not RB 10_1101-2020_01_28_923532 155 5 certified certify VBN 10_1101-2020_01_28_923532 155 6 by by IN 10_1101-2020_01_28_923532 155 7 peer peer NN 10_1101-2020_01_28_923532 155 8 review review NN 10_1101-2020_01_28_923532 155 9 ) ) -RRB- 10_1101-2020_01_28_923532 155 10 is be VBZ 10_1101-2020_01_28_923532 155 11 the the DT 10_1101-2020_01_28_923532 155 12 author author NN 10_1101-2020_01_28_923532 155 13 / / SYM 10_1101-2020_01_28_923532 155 14 funder funder NN 10_1101-2020_01_28_923532 155 15 . . . 10_1101-2020_01_28_923532 156 1 This this DT 10_1101-2020_01_28_923532 156 2 article article NN 10_1101-2020_01_28_923532 156 3 is be VBZ 10_1101-2020_01_28_923532 156 4 a a DT 10_1101-2020_01_28_923532 156 5 US US NNP 10_1101-2020_01_28_923532 156 6 Government Government NNP 10_1101-2020_01_28_923532 156 7 work work NN 10_1101-2020_01_28_923532 156 8 . . . 10_1101-2020_01_28_923532 157 1 It -PRON- PRP 10_1101-2020_01_28_923532 157 2 is be VBZ 10_1101-2020_01_28_923532 157 3 not not RB 10_1101-2020_01_28_923532 157 4 subject subject JJ 10_1101-2020_01_28_923532 157 5 to to IN 10_1101-2020_01_28_923532 157 6 copyright copyright NN 10_1101-2020_01_28_923532 157 7 under under IN 10_1101-2020_01_28_923532 157 8 17 17 CD 10_1101-2020_01_28_923532 157 9 USC usc NN 10_1101-2020_01_28_923532 157 10 The the DT 10_1101-2020_01_28_923532 157 11 copyright copyright NN 10_1101-2020_01_28_923532 157 12 holder holder NN 10_1101-2020_01_28_923532 157 13 for for IN 10_1101-2020_01_28_923532 157 14 this this DT 10_1101-2020_01_28_923532 157 15 preprintthis preprintthis NN 10_1101-2020_01_28_923532 157 16 version version NN 10_1101-2020_01_28_923532 157 17 posted post VBD 10_1101-2020_01_28_923532 157 18 February February NNP 10_1101-2020_01_28_923532 157 19 12 12 CD 10_1101-2020_01_28_923532 157 20 , , , 10_1101-2020_01_28_923532 157 21 2021 2021 CD 10_1101-2020_01_28_923532 157 22 . . . 10_1101-2020_01_28_923532 157 23 ; ; : 10_1101-2020_01_28_923532 157 24 https://doi.org/10.1101/2020.01.28.923532doi https://doi.org/10.1101/2020.01.28.923532doi ADD 10_1101-2020_01_28_923532 157 25 : : : 10_1101-2020_01_28_923532 157 26 bioRxiv biorxiv VB 10_1101-2020_01_28_923532 157 27 preprint preprint NN 10_1101-2020_01_28_923532 157 28 https://doi.org/10.1101/2020.01.28.923532 https://doi.org/10.1101/2020.01.28.923532 UH 10_1101-2020_01_28_923532 157 29 13 13 CD 10_1101-2020_01_28_923532 157 30 Figure figure NN 10_1101-2020_01_28_923532 157 31 3 3 CD 10_1101-2020_01_28_923532 157 32 . . . 10_1101-2020_01_28_923532 158 1 Heat heat NN 10_1101-2020_01_28_923532 158 2 maps map NNS 10_1101-2020_01_28_923532 158 3 showing show VBG 10_1101-2020_01_28_923532 158 4 how how WRB 10_1101-2020_01_28_923532 158 5 the the DT 10_1101-2020_01_28_923532 158 6 cohort cohort NN 10_1101-2020_01_28_923532 158 7 target target NN 10_1101-2020_01_28_923532 158 8 set set VBN 10_1101-2020_01_28_923532 158 9 size size NN 10_1101-2020_01_28_923532 158 10 ( ( -LRB- 10_1101-2020_01_28_923532 158 11 CTS CTS NNP 10_1101-2020_01_28_923532 158 12 ) ) -RRB- 10_1101-2020_01_28_923532 158 13 varies vary VBZ 10_1101-2020_01_28_923532 158 14 as as IN 10_1101-2020_01_28_923532 158 15 a a DT 10_1101-2020_01_28_923532 158 16 function function NN 10_1101-2020_01_28_923532 158 17 of of IN 10_1101-2020_01_28_923532 158 18 𝒍𝒃 𝒍𝒃 NNP 10_1101-2020_01_28_923532 158 19 , , , 10_1101-2020_01_28_923532 158 20 𝒖𝒃 𝒖𝒃 NNP 10_1101-2020_01_28_923532 158 21 , , , 10_1101-2020_01_28_923532 158 22 𝒓 𝒓 NNP 10_1101-2020_01_28_923532 158 23 and and CC 10_1101-2020_01_28_923532 158 24 across across IN 10_1101-2020_01_28_923532 158 25 data datum NNS 10_1101-2020_01_28_923532 158 26 sets set NNS 10_1101-2020_01_28_923532 158 27 . . . 10_1101-2020_01_28_923532 159 1 For for IN 10_1101-2020_01_28_923532 159 2 each each DT 10_1101-2020_01_28_923532 159 3 plot plot NN 10_1101-2020_01_28_923532 159 4 the the DT 10_1101-2020_01_28_923532 159 5 x x NN 10_1101-2020_01_28_923532 159 6 - - : 10_1101-2020_01_28_923532 159 7 axis axis NN 10_1101-2020_01_28_923532 159 8 and and CC 10_1101-2020_01_28_923532 159 9 y y NN 10_1101-2020_01_28_923532 159 10 - - : 10_1101-2020_01_28_923532 159 11 axis axis NNP 10_1101-2020_01_28_923532 159 12 represent represent VBP 10_1101-2020_01_28_923532 159 13 lb lb JJ 10_1101-2020_01_28_923532 159 14 and and CC 10_1101-2020_01_28_923532 159 15 ub ub IN 10_1101-2020_01_28_923532 159 16 parameter parameter NN 10_1101-2020_01_28_923532 159 17 values value NNS 10_1101-2020_01_28_923532 159 18 , , , 10_1101-2020_01_28_923532 159 19 respectively respectively RB 10_1101-2020_01_28_923532 159 20 . . . 10_1101-2020_01_28_923532 160 1 The the DT 10_1101-2020_01_28_923532 160 2 scale scale NN 10_1101-2020_01_28_923532 160 3 on on IN 10_1101-2020_01_28_923532 160 4 the the DT 10_1101-2020_01_28_923532 160 5 right right NN 10_1101-2020_01_28_923532 160 6 shows show VBZ 10_1101-2020_01_28_923532 160 7 the the DT 10_1101-2020_01_28_923532 160 8 cohort cohort NN 10_1101-2020_01_28_923532 160 9 target target NN 10_1101-2020_01_28_923532 160 10 set set VBN 10_1101-2020_01_28_923532 160 11 sizes size NNS 10_1101-2020_01_28_923532 160 12 by by IN 10_1101-2020_01_28_923532 160 13 color color NN 10_1101-2020_01_28_923532 160 14 scale scale NN 10_1101-2020_01_28_923532 160 15 . . . 10_1101-2020_01_28_923532 161 1 We -PRON- PRP 10_1101-2020_01_28_923532 161 2 show show VBP 10_1101-2020_01_28_923532 161 3 separate separate JJ 10_1101-2020_01_28_923532 161 4 plots plot NNS 10_1101-2020_01_28_923532 161 5 for for IN 10_1101-2020_01_28_923532 161 6 𝑟 𝑟 NNP 10_1101-2020_01_28_923532 161 7 = = SYM 10_1101-2020_01_28_923532 161 8 2.0 2.0 CD 10_1101-2020_01_28_923532 161 9 , , , 10_1101-2020_01_28_923532 161 10 3.0 3.0 CD 10_1101-2020_01_28_923532 161 11 here here RB 10_1101-2020_01_28_923532 161 12 and and CC 10_1101-2020_01_28_923532 161 13 a a DT 10_1101-2020_01_28_923532 161 14 larger large JJR 10_1101-2020_01_28_923532 161 15 set set NN 10_1101-2020_01_28_923532 161 16 { { -LRB- 10_1101-2020_01_28_923532 161 17 1.5 1.5 CD 10_1101-2020_01_28_923532 161 18 , , , 10_1101-2020_01_28_923532 161 19 2.0 2.0 CD 10_1101-2020_01_28_923532 161 20 , , , 10_1101-2020_01_28_923532 161 21 2.5 2.5 CD 10_1101-2020_01_28_923532 161 22 , , , 10_1101-2020_01_28_923532 161 23 3.0 3.0 CD 10_1101-2020_01_28_923532 161 24 } } -RRB- 10_1101-2020_01_28_923532 161 25 in in IN 10_1101-2020_01_28_923532 161 26 Supplementary Supplementary NNP 10_1101-2020_01_28_923532 161 27 Materials Materials NNP 10_1101-2020_01_28_923532 161 28 3 3 CD 10_1101-2020_01_28_923532 161 29 . . . 10_1101-2020_01_28_923532 162 1 Individual individual JJ 10_1101-2020_01_28_923532 162 2 values value NNS 10_1101-2020_01_28_923532 162 3 are be VBP 10_1101-2020_01_28_923532 162 4 not not RB 10_1101-2020_01_28_923532 162 5 necessarily necessarily RB 10_1101-2020_01_28_923532 162 6 integers integer NNS 10_1101-2020_01_28_923532 162 7 because because IN 10_1101-2020_01_28_923532 162 8 each each DT 10_1101-2020_01_28_923532 162 9 value value NN 10_1101-2020_01_28_923532 162 10 represents represent VBZ 10_1101-2020_01_28_923532 162 11 the the DT 10_1101-2020_01_28_923532 162 12 mean mean NN 10_1101-2020_01_28_923532 162 13 of of IN 10_1101-2020_01_28_923532 162 14 20 20 CD 10_1101-2020_01_28_923532 162 15 replicates replicate NNS 10_1101-2020_01_28_923532 162 16 of of IN 10_1101-2020_01_28_923532 162 17 sampling sample VBG 10_1101-2020_01_28_923532 162 18 𝑐 𝑐 NN 10_1101-2020_01_28_923532 162 19 ( ( -LRB- 10_1101-2020_01_28_923532 162 20 500 500 CD 10_1101-2020_01_28_923532 162 21 for for IN 10_1101-2020_01_28_923532 162 22 each each DT 10_1101-2020_01_28_923532 162 23 of of IN 10_1101-2020_01_28_923532 162 24 the the DT 10_1101-2020_01_28_923532 162 25 data data NN 10_1101-2020_01_28_923532 162 26 sets set NNS 10_1101-2020_01_28_923532 162 27 shown show VBN 10_1101-2020_01_28_923532 162 28 here here RB 10_1101-2020_01_28_923532 162 29 ) ) -RRB- 10_1101-2020_01_28_923532 162 30 cells cell NNS 10_1101-2020_01_28_923532 162 31 ( ( -LRB- 10_1101-2020_01_28_923532 162 32 Figure figure NN 10_1101-2020_01_28_923532 162 33 S1 s1 NN 10_1101-2020_01_28_923532 162 34 ) ) -RRB- 10_1101-2020_01_28_923532 162 35 . . . 10_1101-2020_01_28_923532 163 1 We -PRON- PRP 10_1101-2020_01_28_923532 163 2 next next RB 10_1101-2020_01_28_923532 163 3 examined examine VBD 10_1101-2020_01_28_923532 163 4 what what WP 10_1101-2020_01_28_923532 163 5 are be VBP 10_1101-2020_01_28_923532 163 6 the the DT 10_1101-2020_01_28_923532 163 7 resulting result VBG 10_1101-2020_01_28_923532 163 8 individual individual JJ 10_1101-2020_01_28_923532 163 9 target target NN 10_1101-2020_01_28_923532 163 10 set set VBN 10_1101-2020_01_28_923532 163 11 ( ( -LRB- 10_1101-2020_01_28_923532 163 12 ITS its PRP$ 10_1101-2020_01_28_923532 163 13 ) ) -RRB- 10_1101-2020_01_28_923532 163 14 sizes size NNS 10_1101-2020_01_28_923532 163 15 obtained obtain VBN 10_1101-2020_01_28_923532 163 16 in in IN 10_1101-2020_01_28_923532 163 17 the the DT 10_1101-2020_01_28_923532 163 18 optimal optimal JJ 10_1101-2020_01_28_923532 163 19 combinations combination NNS 10_1101-2020_01_28_923532 163 20 under under IN 10_1101-2020_01_28_923532 163 21 the the DT 10_1101-2020_01_28_923532 163 22 same same JJ 10_1101-2020_01_28_923532 163 23 conditions condition NNS 10_1101-2020_01_28_923532 163 24 . . . 10_1101-2020_01_28_923532 164 1 In in IN 10_1101-2020_01_28_923532 164 2 all all DT 10_1101-2020_01_28_923532 164 3 data data NN 10_1101-2020_01_28_923532 164 4 sets set NNS 10_1101-2020_01_28_923532 164 5 , , , 10_1101-2020_01_28_923532 164 6 the the DT 10_1101-2020_01_28_923532 164 7 mean mean JJ 10_1101-2020_01_28_923532 164 8 ITS its PRP$ 10_1101-2020_01_28_923532 164 9 sizes size NNS 10_1101-2020_01_28_923532 164 10 are be VBP 10_1101-2020_01_28_923532 164 11 in in IN 10_1101-2020_01_28_923532 164 12 the the DT 10_1101-2020_01_28_923532 164 13 single single JJ 10_1101-2020_01_28_923532 164 14 digits digit NNS 10_1101-2020_01_28_923532 164 15 for for IN 10_1101-2020_01_28_923532 164 16 most most JJS 10_1101-2020_01_28_923532 164 17 values value NNS 10_1101-2020_01_28_923532 164 18 of of IN 10_1101-2020_01_28_923532 164 19 𝑙𝑏 𝑙𝑏 NN 10_1101-2020_01_28_923532 164 20 and and CC 10_1101-2020_01_28_923532 164 21 𝑢𝑏. 𝑢𝑏. NN 10_1101-2020_01_28_923532 165 1 The the DT 10_1101-2020_01_28_923532 165 2 distributions distribution NNS 10_1101-2020_01_28_923532 165 3 of of IN 10_1101-2020_01_28_923532 165 4 ITS its PRP$ 10_1101-2020_01_28_923532 165 5 sizes size NNS 10_1101-2020_01_28_923532 165 6 are be VBP 10_1101-2020_01_28_923532 165 7 shown show VBN 10_1101-2020_01_28_923532 165 8 for for IN 10_1101-2020_01_28_923532 165 9 four four CD 10_1101-2020_01_28_923532 165 10 data data NN 10_1101-2020_01_28_923532 165 11 sets set NNS 10_1101-2020_01_28_923532 165 12 and and CC 10_1101-2020_01_28_923532 165 13 two two CD 10_1101-2020_01_28_923532 165 14 combinations combination NNS 10_1101-2020_01_28_923532 165 15 of of IN 10_1101-2020_01_28_923532 165 16 ( ( -LRB- 10_1101-2020_01_28_923532 165 17 𝑙𝑏 𝑙𝑏 UH 10_1101-2020_01_28_923532 165 18 , , , 10_1101-2020_01_28_923532 165 19 𝑢𝑏 𝑢𝑏 NNP 10_1101-2020_01_28_923532 165 20 ) ) -RRB- 10_1101-2020_01_28_923532 165 21 ( ( -LRB- 10_1101-2020_01_28_923532 165 22 Figure figure NN 10_1101-2020_01_28_923532 165 23 4 4 CD 10_1101-2020_01_28_923532 165 24 ) ) -RRB- 10_1101-2020_01_28_923532 165 25 and and CC 10_1101-2020_01_28_923532 165 26 for for IN 10_1101-2020_01_28_923532 165 27 additional additional JJ 10_1101-2020_01_28_923532 165 28 data data NN 10_1101-2020_01_28_923532 165 29 sets set NNS 10_1101-2020_01_28_923532 165 30 in in IN 10_1101-2020_01_28_923532 165 31 Supplementary Supplementary NNP 10_1101-2020_01_28_923532 165 32 Materials material NNS 10_1101-2020_01_28_923532 165 33 5 5 CD 10_1101-2020_01_28_923532 165 34 , , , 10_1101-2020_01_28_923532 165 35 Figure Figure NNP 10_1101-2020_01_28_923532 165 36 S11 S11 NNP 10_1101-2020_01_28_923532 165 37 . . . 10_1101-2020_01_28_923532 166 1 Overall overall RB 10_1101-2020_01_28_923532 166 2 , , , 10_1101-2020_01_28_923532 166 3 the the DT 10_1101-2020_01_28_923532 166 4 mean mean JJ 10_1101-2020_01_28_923532 166 5 ITS its PRP$ 10_1101-2020_01_28_923532 166 6 sizes size NNS 10_1101-2020_01_28_923532 166 7 with with IN 10_1101-2020_01_28_923532 166 8 the the DT 10_1101-2020_01_28_923532 166 9 baseline baseline JJ 10_1101-2020_01_28_923532 166 10 parameter parameter NN 10_1101-2020_01_28_923532 166 11 values value NNS 10_1101-2020_01_28_923532 166 12 ( ( -LRB- 10_1101-2020_01_28_923532 166 13 𝑟 𝑟 NNP 10_1101-2020_01_28_923532 166 14 = = SYM 10_1101-2020_01_28_923532 166 15 2.0 2.0 CD 10_1101-2020_01_28_923532 166 16 , , , 10_1101-2020_01_28_923532 166 17 𝑙𝑏 𝑙𝑏 NN 10_1101-2020_01_28_923532 166 18 = = SYM 10_1101-2020_01_28_923532 166 19 0.8 0.8 CD 10_1101-2020_01_28_923532 166 20 , , , 10_1101-2020_01_28_923532 166 21 𝑢𝑏 𝑢𝑏 NNP 10_1101-2020_01_28_923532 166 22 = = SYM 10_1101-2020_01_28_923532 166 23 0.1 0.1 CD 10_1101-2020_01_28_923532 166 24 ) ) -RRB- 10_1101-2020_01_28_923532 166 25 range range VBP 10_1101-2020_01_28_923532 166 26 from from IN 10_1101-2020_01_28_923532 166 27 1.0 1.0 CD 10_1101-2020_01_28_923532 166 28 to to TO 10_1101-2020_01_28_923532 166 29 3.91 3.91 CD 10_1101-2020_01_28_923532 166 30 among among IN 10_1101-2020_01_28_923532 166 31 the the DT 10_1101-2020_01_28_923532 166 32 nine nine CD 10_1101-2020_01_28_923532 166 33 data data NN 10_1101-2020_01_28_923532 166 34 sets set NNS 10_1101-2020_01_28_923532 166 35 studied study VBN 10_1101-2020_01_28_923532 166 36 ( ( -LRB- 10_1101-2020_01_28_923532 166 37 Supplementary Supplementary NNP 10_1101-2020_01_28_923532 166 38 Table Table NNP 10_1101-2020_01_28_923532 166 39 S2 S2 NNP 10_1101-2020_01_28_923532 166 40 ) ) -RRB- 10_1101-2020_01_28_923532 166 41 ; ; : 10_1101-2020_01_28_923532 166 42 on on IN 10_1101-2020_01_28_923532 166 43 average average JJ 10_1101-2020_01_28_923532 166 44 4 4 CD 10_1101-2020_01_28_923532 166 45 targets target NNS 10_1101-2020_01_28_923532 166 46 per per IN 10_1101-2020_01_28_923532 166 47 patient patient NN 10_1101-2020_01_28_923532 166 48 should should MD 10_1101-2020_01_28_923532 166 49 hence hence RB 10_1101-2020_01_28_923532 166 50 suffice suffice VB 10_1101-2020_01_28_923532 166 51 if if IN 10_1101-2020_01_28_923532 166 52 enough enough JJ 10_1101-2020_01_28_923532 166 53 single single JJ 10_1101-2020_01_28_923532 166 54 - - HYPH 10_1101-2020_01_28_923532 166 55 target target NN 10_1101-2020_01_28_923532 166 56 treatments treatment NNS 10_1101-2020_01_28_923532 166 57 are be VBP 10_1101-2020_01_28_923532 166 58 available available JJ 10_1101-2020_01_28_923532 166 59 in in IN 10_1101-2020_01_28_923532 166 60 the the DT 10_1101-2020_01_28_923532 166 61 cohort cohort NN 10_1101-2020_01_28_923532 166 62 target target NN 10_1101-2020_01_28_923532 166 63 set set VBN 10_1101-2020_01_28_923532 166 64 . . . 10_1101-2020_01_28_923532 167 1 However however RB 10_1101-2020_01_28_923532 167 2 , , , 10_1101-2020_01_28_923532 167 3 there there EX 10_1101-2020_01_28_923532 167 4 is be VBZ 10_1101-2020_01_28_923532 167 5 considerable considerable JJ 10_1101-2020_01_28_923532 167 6 variability variability NN 10_1101-2020_01_28_923532 167 7 across across IN 10_1101-2020_01_28_923532 167 8 patients patient NNS 10_1101-2020_01_28_923532 167 9 . . . 10_1101-2020_01_28_923532 168 1 Evidently evidently RB 10_1101-2020_01_28_923532 168 2 , , , 10_1101-2020_01_28_923532 168 3 as as IN 10_1101-2020_01_28_923532 168 4 we -PRON- PRP 10_1101-2020_01_28_923532 168 5 make make VBP 10_1101-2020_01_28_923532 168 6 the the DT 10_1101-2020_01_28_923532 168 7 treatment treatment NN 10_1101-2020_01_28_923532 168 8 requirements requirement NNS 10_1101-2020_01_28_923532 168 9 more more RBR 10_1101-2020_01_28_923532 168 10 stringent stringent JJ 10_1101-2020_01_28_923532 168 11 ( ( -LRB- 10_1101-2020_01_28_923532 168 12 by by IN 10_1101-2020_01_28_923532 168 13 increasing increase VBG 10_1101-2020_01_28_923532 168 14 𝑙𝑏 𝑙𝑏 RB 10_1101-2020_01_28_923532 168 15 from from IN 10_1101-2020_01_28_923532 168 16 0.8 0.8 CD 10_1101-2020_01_28_923532 168 17 to to IN 10_1101-2020_01_28_923532 168 18 0.9 0.9 CD 10_1101-2020_01_28_923532 168 19 and and CC 10_1101-2020_01_28_923532 168 20 decreasing decrease VBG 10_1101-2020_01_28_923532 168 21 𝑢𝑏 𝑢𝑏 NNP 10_1101-2020_01_28_923532 168 22 from from IN 10_1101-2020_01_28_923532 168 23 0.1 0.1 CD 10_1101-2020_01_28_923532 168 24 to to IN 10_1101-2020_01_28_923532 168 25 0.05 0.05 CD 10_1101-2020_01_28_923532 168 26 ) ) -RRB- 10_1101-2020_01_28_923532 168 27 , , , 10_1101-2020_01_28_923532 168 28 the the DT 10_1101-2020_01_28_923532 168 29 variability variability NN 10_1101-2020_01_28_923532 168 30 in in IN 10_1101-2020_01_28_923532 168 31 ITS its PRP$ 10_1101-2020_01_28_923532 168 32 size size NN 10_1101-2020_01_28_923532 168 33 across across IN 10_1101-2020_01_28_923532 168 34 patients patient NNS 10_1101-2020_01_28_923532 168 35 became become VBD 10_1101-2020_01_28_923532 168 36 105 105 CD 10_1101-2020_01_28_923532 168 37 and and CC 10_1101-2020_01_28_923532 168 38 is be VBZ 10_1101-2020_01_28_923532 168 39 also also RB 10_1101-2020_01_28_923532 168 40 made make VBN 10_1101-2020_01_28_923532 168 41 available available JJ 10_1101-2020_01_28_923532 168 42 for for IN 10_1101-2020_01_28_923532 168 43 use use NN 10_1101-2020_01_28_923532 168 44 under under IN 10_1101-2020_01_28_923532 168 45 a a DT 10_1101-2020_01_28_923532 168 46 CC0 CC0 NNP 10_1101-2020_01_28_923532 168 47 license license NN 10_1101-2020_01_28_923532 168 48 . . . 10_1101-2020_01_28_923532 169 1 ( ( -LRB- 10_1101-2020_01_28_923532 169 2 which which WDT 10_1101-2020_01_28_923532 169 3 was be VBD 10_1101-2020_01_28_923532 169 4 not not RB 10_1101-2020_01_28_923532 169 5 certified certify VBN 10_1101-2020_01_28_923532 169 6 by by IN 10_1101-2020_01_28_923532 169 7 peer peer NN 10_1101-2020_01_28_923532 169 8 review review NN 10_1101-2020_01_28_923532 169 9 ) ) -RRB- 10_1101-2020_01_28_923532 169 10 is be VBZ 10_1101-2020_01_28_923532 169 11 the the DT 10_1101-2020_01_28_923532 169 12 author author NN 10_1101-2020_01_28_923532 169 13 / / SYM 10_1101-2020_01_28_923532 169 14 funder funder NN 10_1101-2020_01_28_923532 169 15 . . . 10_1101-2020_01_28_923532 170 1 This this DT 10_1101-2020_01_28_923532 170 2 article article NN 10_1101-2020_01_28_923532 170 3 is be VBZ 10_1101-2020_01_28_923532 170 4 a a DT 10_1101-2020_01_28_923532 170 5 US US NNP 10_1101-2020_01_28_923532 170 6 Government Government NNP 10_1101-2020_01_28_923532 170 7 work work NN 10_1101-2020_01_28_923532 170 8 . . . 10_1101-2020_01_28_923532 171 1 It -PRON- PRP 10_1101-2020_01_28_923532 171 2 is be VBZ 10_1101-2020_01_28_923532 171 3 not not RB 10_1101-2020_01_28_923532 171 4 subject subject JJ 10_1101-2020_01_28_923532 171 5 to to IN 10_1101-2020_01_28_923532 171 6 copyright copyright NN 10_1101-2020_01_28_923532 171 7 under under IN 10_1101-2020_01_28_923532 171 8 17 17 CD 10_1101-2020_01_28_923532 171 9 USC usc NN 10_1101-2020_01_28_923532 171 10 The the DT 10_1101-2020_01_28_923532 171 11 copyright copyright NN 10_1101-2020_01_28_923532 171 12 holder holder NN 10_1101-2020_01_28_923532 171 13 for for IN 10_1101-2020_01_28_923532 171 14 this this DT 10_1101-2020_01_28_923532 171 15 preprintthis preprintthis NN 10_1101-2020_01_28_923532 171 16 version version NN 10_1101-2020_01_28_923532 171 17 posted post VBD 10_1101-2020_01_28_923532 171 18 February February NNP 10_1101-2020_01_28_923532 171 19 12 12 CD 10_1101-2020_01_28_923532 171 20 , , , 10_1101-2020_01_28_923532 171 21 2021 2021 CD 10_1101-2020_01_28_923532 171 22 . . . 10_1101-2020_01_28_923532 171 23 ; ; : 10_1101-2020_01_28_923532 171 24 https://doi.org/10.1101/2020.01.28.923532doi https://doi.org/10.1101/2020.01.28.923532doi ADD 10_1101-2020_01_28_923532 171 25 : : : 10_1101-2020_01_28_923532 171 26 bioRxiv biorxiv VB 10_1101-2020_01_28_923532 171 27 preprint preprint NN 10_1101-2020_01_28_923532 171 28 https://doi.org/10.1101/2020.01.28.923532 https://doi.org/10.1101/2020.01.28.923532 PRP 10_1101-2020_01_28_923532 171 29 14 14 CD 10_1101-2020_01_28_923532 171 30 larger large JJR 10_1101-2020_01_28_923532 171 31 . . . 10_1101-2020_01_28_923532 172 1 Importantly importantly RB 10_1101-2020_01_28_923532 172 2 , , , 10_1101-2020_01_28_923532 172 3 this this DT 10_1101-2020_01_28_923532 172 4 analysis analysis NN 10_1101-2020_01_28_923532 172 5 provides provide VBZ 10_1101-2020_01_28_923532 172 6 rigorous rigorous JJ 10_1101-2020_01_28_923532 172 7 quantifiable quantifiable JJ 10_1101-2020_01_28_923532 172 8 evidence evidence NN 10_1101-2020_01_28_923532 172 9 grounding ground VBG 10_1101-2020_01_28_923532 172 10 the the DT 10_1101-2020_01_28_923532 172 11 prevailing prevail VBG 10_1101-2020_01_28_923532 172 12 observation observation NN 10_1101-2020_01_28_923532 172 13 that that IN 10_1101-2020_01_28_923532 172 14 among among IN 10_1101-2020_01_28_923532 172 15 tumors tumor NNS 10_1101-2020_01_28_923532 172 16 of of IN 10_1101-2020_01_28_923532 172 17 the the DT 10_1101-2020_01_28_923532 172 18 same same JJ 10_1101-2020_01_28_923532 172 19 type type NN 10_1101-2020_01_28_923532 172 20 , , , 10_1101-2020_01_28_923532 172 21 some some DT 10_1101-2020_01_28_923532 172 22 individual individual JJ 10_1101-2020_01_28_923532 172 23 tumors tumor NNS 10_1101-2020_01_28_923532 172 24 may may MD 10_1101-2020_01_28_923532 172 25 be be VB 10_1101-2020_01_28_923532 172 26 much much RB 10_1101-2020_01_28_923532 172 27 harder hard JJR 10_1101-2020_01_28_923532 172 28 to to TO 10_1101-2020_01_28_923532 172 29 treat treat VB 10_1101-2020_01_28_923532 172 30 than than IN 10_1101-2020_01_28_923532 172 31 others other NNS 10_1101-2020_01_28_923532 172 32 . . . 10_1101-2020_01_28_923532 173 1 Taken take VBN 10_1101-2020_01_28_923532 173 2 together together RB 10_1101-2020_01_28_923532 173 3 , , , 10_1101-2020_01_28_923532 173 4 these these DT 10_1101-2020_01_28_923532 173 5 results result NNS 10_1101-2020_01_28_923532 173 6 show show VBP 10_1101-2020_01_28_923532 173 7 that that IN 10_1101-2020_01_28_923532 173 8 we -PRON- PRP 10_1101-2020_01_28_923532 173 9 can can MD 10_1101-2020_01_28_923532 173 10 compute compute VB 10_1101-2020_01_28_923532 173 11 precise precise JJ 10_1101-2020_01_28_923532 173 12 estimates estimate NNS 10_1101-2020_01_28_923532 173 13 of of IN 10_1101-2020_01_28_923532 173 14 the the DT 10_1101-2020_01_28_923532 173 15 number number NN 10_1101-2020_01_28_923532 173 16 of of IN 10_1101-2020_01_28_923532 173 17 targets target NNS 10_1101-2020_01_28_923532 173 18 needed need VBN 10_1101-2020_01_28_923532 173 19 for for IN 10_1101-2020_01_28_923532 173 20 cohorts cohort NNS 10_1101-2020_01_28_923532 173 21 ( ( -LRB- 10_1101-2020_01_28_923532 173 22 in in IN 10_1101-2020_01_28_923532 173 23 the the DT 10_1101-2020_01_28_923532 173 24 tens ten NNS 10_1101-2020_01_28_923532 173 25 ) ) -RRB- 10_1101-2020_01_28_923532 173 26 and and CC 10_1101-2020_01_28_923532 173 27 individual individual JJ 10_1101-2020_01_28_923532 173 28 patients patient NNS 10_1101-2020_01_28_923532 173 29 ( ( -LRB- 10_1101-2020_01_28_923532 173 30 in in IN 10_1101-2020_01_28_923532 173 31 the the DT 10_1101-2020_01_28_923532 173 32 single single JJ 10_1101-2020_01_28_923532 173 33 digits digit NNS 10_1101-2020_01_28_923532 173 34 usually usually RB 10_1101-2020_01_28_923532 173 35 ) ) -RRB- 10_1101-2020_01_28_923532 173 36 and and CC 10_1101-2020_01_28_923532 173 37 that that IN 10_1101-2020_01_28_923532 173 38 these these DT 10_1101-2020_01_28_923532 173 39 estimates estimate NNS 10_1101-2020_01_28_923532 173 40 are be VBP 10_1101-2020_01_28_923532 173 41 sensitive sensitive JJ 10_1101-2020_01_28_923532 173 42 to to IN 10_1101-2020_01_28_923532 173 43 the the DT 10_1101-2020_01_28_923532 173 44 killing kill VBG 10_1101-2020_01_28_923532 173 45 stringency stringency NN 10_1101-2020_01_28_923532 173 46 , , , 10_1101-2020_01_28_923532 173 47 especially especially RB 10_1101-2020_01_28_923532 173 48 when when WRB 10_1101-2020_01_28_923532 173 49 the the DT 10_1101-2020_01_28_923532 173 50 𝑙𝑏 𝑙𝑏 NN 10_1101-2020_01_28_923532 173 51 increases increase VBZ 10_1101-2020_01_28_923532 173 52 above above IN 10_1101-2020_01_28_923532 173 53 0.8 0.8 CD 10_1101-2020_01_28_923532 173 54 . . . 10_1101-2020_01_28_923532 174 1 The the DT 10_1101-2020_01_28_923532 174 2 variation variation NN 10_1101-2020_01_28_923532 174 3 for for IN 10_1101-2020_01_28_923532 174 4 more more RBR 10_1101-2020_01_28_923532 174 5 aggressive aggressive JJ 10_1101-2020_01_28_923532 174 6 killing killing NN 10_1101-2020_01_28_923532 174 7 regimes regime NNS 10_1101-2020_01_28_923532 174 8 , , , 10_1101-2020_01_28_923532 174 9 with with IN 10_1101-2020_01_28_923532 174 10 values value NNS 10_1101-2020_01_28_923532 174 11 of of IN 10_1101-2020_01_28_923532 174 12 𝑙𝑏 𝑙𝑏 NN 10_1101-2020_01_28_923532 174 13 up up IN 10_1101-2020_01_28_923532 174 14 to to TO 10_1101-2020_01_28_923532 174 15 0.99 0.99 CD 10_1101-2020_01_28_923532 174 16 for for IN 10_1101-2020_01_28_923532 174 17 the the DT 10_1101-2020_01_28_923532 174 18 baseline baseline NN 10_1101-2020_01_28_923532 174 19 𝑟 𝑟 NNP 10_1101-2020_01_28_923532 174 20 = = SYM 10_1101-2020_01_28_923532 174 21 2.0 2.0 CD 10_1101-2020_01_28_923532 174 22 is be VBZ 10_1101-2020_01_28_923532 174 23 displayed display VBN 10_1101-2020_01_28_923532 174 24 in in IN 10_1101-2020_01_28_923532 174 25 Figures Figures NNP 10_1101-2020_01_28_923532 174 26 S12-S13 S12-S13 NNP 10_1101-2020_01_28_923532 174 27 in in IN 10_1101-2020_01_28_923532 174 28 Supplementary Supplementary NNP 10_1101-2020_01_28_923532 174 29 Materials Materials NNP 10_1101-2020_01_28_923532 174 30 6 6 CD 10_1101-2020_01_28_923532 174 31 . . . 10_1101-2020_01_28_923532 175 1 For for IN 10_1101-2020_01_28_923532 175 2 fixed fixed JJ 10_1101-2020_01_28_923532 175 3 𝑙𝑏 𝑙𝑏 NN 10_1101-2020_01_28_923532 175 4 = = SYM 10_1101-2020_01_28_923532 175 5 0.8 0.8 CD 10_1101-2020_01_28_923532 175 6 , , , 10_1101-2020_01_28_923532 175 7 𝑢𝑏 𝑢𝑏 NNP 10_1101-2020_01_28_923532 175 8 = = SYM 10_1101-2020_01_28_923532 175 9 0.1 0.1 CD 10_1101-2020_01_28_923532 175 10 and and CC 10_1101-2020_01_28_923532 175 11 varying vary VBG 10_1101-2020_01_28_923532 175 12 𝑟 𝑟 NNP 10_1101-2020_01_28_923532 175 13 , , , 10_1101-2020_01_28_923532 175 14 smallest small JJS 10_1101-2020_01_28_923532 175 15 CTS CTS NNP 10_1101-2020_01_28_923532 175 16 sizes size NNS 10_1101-2020_01_28_923532 175 17 are be VBP 10_1101-2020_01_28_923532 175 18 typically typically RB 10_1101-2020_01_28_923532 175 19 obtained obtain VBN 10_1101-2020_01_28_923532 175 20 for for IN 10_1101-2020_01_28_923532 175 21 𝑟 𝑟 DT 10_1101-2020_01_28_923532 175 22 values value NNS 10_1101-2020_01_28_923532 175 23 close close JJ 10_1101-2020_01_28_923532 175 24 to to IN 10_1101-2020_01_28_923532 175 25 2.0 2.0 CD 10_1101-2020_01_28_923532 175 26 , , , 10_1101-2020_01_28_923532 175 27 further further RB 10_1101-2020_01_28_923532 175 28 motivating motivate VBG 10_1101-2020_01_28_923532 175 29 our -PRON- PRP$ 10_1101-2020_01_28_923532 175 30 choice choice NN 10_1101-2020_01_28_923532 175 31 of of IN 10_1101-2020_01_28_923532 175 32 𝑟 𝑟 NN 10_1101-2020_01_28_923532 175 33 = = SYM 10_1101-2020_01_28_923532 175 34 2 2 CD 10_1101-2020_01_28_923532 175 35 as as IN 10_1101-2020_01_28_923532 175 36 the the DT 10_1101-2020_01_28_923532 175 37 default default NN 10_1101-2020_01_28_923532 175 38 value value NN 10_1101-2020_01_28_923532 175 39 ( ( -LRB- 10_1101-2020_01_28_923532 175 40 Supplementary Supplementary NNP 10_1101-2020_01_28_923532 175 41 Materials Materials NNP 10_1101-2020_01_28_923532 175 42 7 7 CD 10_1101-2020_01_28_923532 175 43 , , , 10_1101-2020_01_28_923532 175 44 Figures Figures NNP 10_1101-2020_01_28_923532 175 45 S14-S15 S14-S15 NNP 10_1101-2020_01_28_923532 175 46 , , , 10_1101-2020_01_28_923532 175 47 Supplementary Supplementary NNP 10_1101-2020_01_28_923532 175 48 Table Table NNP 10_1101-2020_01_28_923532 175 49 S1 S1 NNS 10_1101-2020_01_28_923532 175 50 ) ) -RRB- 10_1101-2020_01_28_923532 175 51 . . . 10_1101-2020_01_28_923532 176 1 Finally finally RB 10_1101-2020_01_28_923532 176 2 , , , 10_1101-2020_01_28_923532 176 3 we -PRON- PRP 10_1101-2020_01_28_923532 176 4 show show VBP 10_1101-2020_01_28_923532 176 5 that that IN 10_1101-2020_01_28_923532 176 6 , , , 10_1101-2020_01_28_923532 176 7 as as IN 10_1101-2020_01_28_923532 176 8 expected expect VBN 10_1101-2020_01_28_923532 176 9 , , , 10_1101-2020_01_28_923532 176 10 a a DT 10_1101-2020_01_28_923532 176 11 ‘ ' `` 10_1101-2020_01_28_923532 176 12 control control NN 10_1101-2020_01_28_923532 176 13 ’ ' '' 10_1101-2020_01_28_923532 176 14 greedy greedy JJ 10_1101-2020_01_28_923532 176 15 heuristic heuristic JJ 10_1101-2020_01_28_923532 176 16 algorithm algorithm NNP 10_1101-2020_01_28_923532 176 17 searching search VBG 10_1101-2020_01_28_923532 176 18 for for IN 10_1101-2020_01_28_923532 176 19 small small JJ 10_1101-2020_01_28_923532 176 20 and and CC 10_1101-2020_01_28_923532 176 21 effective effective JJ 10_1101-2020_01_28_923532 176 22 target target NN 10_1101-2020_01_28_923532 176 23 combinations combination NNS 10_1101-2020_01_28_923532 176 24 finds find VBZ 10_1101-2020_01_28_923532 176 25 ITS its PRP$ 10_1101-2020_01_28_923532 176 26 sizes size NNS 10_1101-2020_01_28_923532 176 27 substantially substantially RB 10_1101-2020_01_28_923532 176 28 larger large JJR 10_1101-2020_01_28_923532 176 29 than than IN 10_1101-2020_01_28_923532 176 30 the the DT 10_1101-2020_01_28_923532 176 31 optimal optimal JJ 10_1101-2020_01_28_923532 176 32 ITS its PRP$ 10_1101-2020_01_28_923532 176 33 sizes size NNS 10_1101-2020_01_28_923532 176 34 identified identify VBN 10_1101-2020_01_28_923532 176 35 using use VBG 10_1101-2020_01_28_923532 176 36 our -PRON- PRP$ 10_1101-2020_01_28_923532 176 37 optimization optimization NN 10_1101-2020_01_28_923532 176 38 algorithm algorithm NN 10_1101-2020_01_28_923532 176 39 ( ( -LRB- 10_1101-2020_01_28_923532 176 40 Figure figure NN 10_1101-2020_01_28_923532 176 41 4 4 CD 10_1101-2020_01_28_923532 176 42 ) ) -RRB- 10_1101-2020_01_28_923532 176 43 . . . 10_1101-2020_01_28_923532 177 1 The the DT 10_1101-2020_01_28_923532 177 2 greedy greedy JJ 10_1101-2020_01_28_923532 177 3 CTS CTS NNP 10_1101-2020_01_28_923532 177 4 size size NN 10_1101-2020_01_28_923532 177 5 is be VBZ 10_1101-2020_01_28_923532 177 6 greater great JJR 10_1101-2020_01_28_923532 177 7 than than IN 10_1101-2020_01_28_923532 177 8 the the DT 10_1101-2020_01_28_923532 177 9 ILP ILP NNP 10_1101-2020_01_28_923532 177 10 optimal optimal JJ 10_1101-2020_01_28_923532 177 11 CTS CTS NNP 10_1101-2020_01_28_923532 177 12 size size NN 10_1101-2020_01_28_923532 177 13 for for IN 10_1101-2020_01_28_923532 177 14 eight eight CD 10_1101-2020_01_28_923532 177 15 out out IN 10_1101-2020_01_28_923532 177 16 of of IN 10_1101-2020_01_28_923532 177 17 nine nine CD 10_1101-2020_01_28_923532 177 18 data data NN 10_1101-2020_01_28_923532 177 19 sets set NNS 10_1101-2020_01_28_923532 177 20 ( ( -LRB- 10_1101-2020_01_28_923532 177 21 Table table NN 10_1101-2020_01_28_923532 177 22 S2 s2 NN 10_1101-2020_01_28_923532 177 23 in in IN 10_1101-2020_01_28_923532 177 24 Supplementary Supplementary NNP 10_1101-2020_01_28_923532 177 25 Materials Materials NNP 10_1101-2020_01_28_923532 177 26 8 8 CD 10_1101-2020_01_28_923532 177 27 , , , 10_1101-2020_01_28_923532 177 28 Methods Methods NNP 10_1101-2020_01_28_923532 177 29 ) ) -RRB- 10_1101-2020_01_28_923532 177 30 . . . 10_1101-2020_01_28_923532 178 1 105 105 CD 10_1101-2020_01_28_923532 178 2 and and CC 10_1101-2020_01_28_923532 178 3 is be VBZ 10_1101-2020_01_28_923532 178 4 also also RB 10_1101-2020_01_28_923532 178 5 made make VBN 10_1101-2020_01_28_923532 178 6 available available JJ 10_1101-2020_01_28_923532 178 7 for for IN 10_1101-2020_01_28_923532 178 8 use use NN 10_1101-2020_01_28_923532 178 9 under under IN 10_1101-2020_01_28_923532 178 10 a a DT 10_1101-2020_01_28_923532 178 11 CC0 CC0 NNP 10_1101-2020_01_28_923532 178 12 license license NN 10_1101-2020_01_28_923532 178 13 . . . 10_1101-2020_01_28_923532 179 1 ( ( -LRB- 10_1101-2020_01_28_923532 179 2 which which WDT 10_1101-2020_01_28_923532 179 3 was be VBD 10_1101-2020_01_28_923532 179 4 not not RB 10_1101-2020_01_28_923532 179 5 certified certify VBN 10_1101-2020_01_28_923532 179 6 by by IN 10_1101-2020_01_28_923532 179 7 peer peer NN 10_1101-2020_01_28_923532 179 8 review review NN 10_1101-2020_01_28_923532 179 9 ) ) -RRB- 10_1101-2020_01_28_923532 179 10 is be VBZ 10_1101-2020_01_28_923532 179 11 the the DT 10_1101-2020_01_28_923532 179 12 author author NN 10_1101-2020_01_28_923532 179 13 / / SYM 10_1101-2020_01_28_923532 179 14 funder funder NN 10_1101-2020_01_28_923532 179 15 . . . 10_1101-2020_01_28_923532 180 1 This this DT 10_1101-2020_01_28_923532 180 2 article article NN 10_1101-2020_01_28_923532 180 3 is be VBZ 10_1101-2020_01_28_923532 180 4 a a DT 10_1101-2020_01_28_923532 180 5 US US NNP 10_1101-2020_01_28_923532 180 6 Government Government NNP 10_1101-2020_01_28_923532 180 7 work work NN 10_1101-2020_01_28_923532 180 8 . . . 10_1101-2020_01_28_923532 181 1 It -PRON- PRP 10_1101-2020_01_28_923532 181 2 is be VBZ 10_1101-2020_01_28_923532 181 3 not not RB 10_1101-2020_01_28_923532 181 4 subject subject JJ 10_1101-2020_01_28_923532 181 5 to to IN 10_1101-2020_01_28_923532 181 6 copyright copyright NN 10_1101-2020_01_28_923532 181 7 under under IN 10_1101-2020_01_28_923532 181 8 17 17 CD 10_1101-2020_01_28_923532 181 9 USC usc NN 10_1101-2020_01_28_923532 181 10 The the DT 10_1101-2020_01_28_923532 181 11 copyright copyright NN 10_1101-2020_01_28_923532 181 12 holder holder NN 10_1101-2020_01_28_923532 181 13 for for IN 10_1101-2020_01_28_923532 181 14 this this DT 10_1101-2020_01_28_923532 181 15 preprintthis preprintthis NN 10_1101-2020_01_28_923532 181 16 version version NN 10_1101-2020_01_28_923532 181 17 posted post VBD 10_1101-2020_01_28_923532 181 18 February February NNP 10_1101-2020_01_28_923532 181 19 12 12 CD 10_1101-2020_01_28_923532 181 20 , , , 10_1101-2020_01_28_923532 181 21 2021 2021 CD 10_1101-2020_01_28_923532 181 22 . . . 10_1101-2020_01_28_923532 181 23 ; ; : 10_1101-2020_01_28_923532 181 24 https://doi.org/10.1101/2020.01.28.923532doi https://doi.org/10.1101/2020.01.28.923532doi ADD 10_1101-2020_01_28_923532 181 25 : : : 10_1101-2020_01_28_923532 181 26 bioRxiv biorxiv VB 10_1101-2020_01_28_923532 181 27 preprint preprint NN 10_1101-2020_01_28_923532 181 28 https://doi.org/10.1101/2020.01.28.923532 https://doi.org/10.1101/2020.01.28.923532 UH 10_1101-2020_01_28_923532 181 29 15 15 CD 10_1101-2020_01_28_923532 181 30 Figure figure NN 10_1101-2020_01_28_923532 181 31 4 4 CD 10_1101-2020_01_28_923532 181 32 . . . 10_1101-2020_01_28_923532 182 1 The the DT 10_1101-2020_01_28_923532 182 2 distribution distribution NN 10_1101-2020_01_28_923532 182 3 of of IN 10_1101-2020_01_28_923532 182 4 optimal optimal JJ 10_1101-2020_01_28_923532 182 5 and and CC 10_1101-2020_01_28_923532 182 6 greedy greedy JJ 10_1101-2020_01_28_923532 182 7 individual individual JJ 10_1101-2020_01_28_923532 182 8 treatment treatment NN 10_1101-2020_01_28_923532 182 9 combination combination NN 10_1101-2020_01_28_923532 182 10 sizes size NNS 10_1101-2020_01_28_923532 182 11 ( ( -LRB- 10_1101-2020_01_28_923532 182 12 ITS its PRP$ 10_1101-2020_01_28_923532 182 13 ) ) -RRB- 10_1101-2020_01_28_923532 182 14 values value NNS 10_1101-2020_01_28_923532 182 15 in in IN 10_1101-2020_01_28_923532 182 16 four four CD 10_1101-2020_01_28_923532 182 17 different different JJ 10_1101-2020_01_28_923532 182 18 cancer cancer NN 10_1101-2020_01_28_923532 182 19 types type NNS 10_1101-2020_01_28_923532 182 20 . . . 10_1101-2020_01_28_923532 183 1 We -PRON- PRP 10_1101-2020_01_28_923532 183 2 study study VBP 10_1101-2020_01_28_923532 183 3 both both CC 10_1101-2020_01_28_923532 183 4 our -PRON- PRP$ 10_1101-2020_01_28_923532 183 5 baseline baseline NN 10_1101-2020_01_28_923532 183 6 parameter parameter NN 10_1101-2020_01_28_923532 183 7 setting setting NN 10_1101-2020_01_28_923532 183 8 ( ( -LRB- 10_1101-2020_01_28_923532 183 9 upper upper JJ 10_1101-2020_01_28_923532 183 10 row row NN 10_1101-2020_01_28_923532 183 11 panels panel NNS 10_1101-2020_01_28_923532 183 12 ) ) -RRB- 10_1101-2020_01_28_923532 183 13 and and CC 10_1101-2020_01_28_923532 183 14 a a DT 10_1101-2020_01_28_923532 183 15 markedly markedly RB 10_1101-2020_01_28_923532 183 16 more more RBR 10_1101-2020_01_28_923532 183 17 stringent stringent JJ 10_1101-2020_01_28_923532 183 18 one one CD 10_1101-2020_01_28_923532 183 19 ( ( -LRB- 10_1101-2020_01_28_923532 183 20 middle middle JJ 10_1101-2020_01_28_923532 183 21 row row NN 10_1101-2020_01_28_923532 183 22 plots plot NNS 10_1101-2020_01_28_923532 183 23 ) ) -RRB- 10_1101-2020_01_28_923532 183 24 . . . 10_1101-2020_01_28_923532 184 1 For for IN 10_1101-2020_01_28_923532 184 2 the the DT 10_1101-2020_01_28_923532 184 3 more more RBR 10_1101-2020_01_28_923532 184 4 stringent stringent JJ 10_1101-2020_01_28_923532 184 5 parameter parameter NN 10_1101-2020_01_28_923532 184 6 setting setting NN 10_1101-2020_01_28_923532 184 7 , , , 10_1101-2020_01_28_923532 184 8 we -PRON- PRP 10_1101-2020_01_28_923532 184 9 compare compare VBP 10_1101-2020_01_28_923532 184 10 the the DT 10_1101-2020_01_28_923532 184 11 ITS its PRP$ 10_1101-2020_01_28_923532 184 12 sizes size NNS 10_1101-2020_01_28_923532 184 13 obtained obtain VBN 10_1101-2020_01_28_923532 184 14 using use VBG 10_1101-2020_01_28_923532 184 15 MadHitter MadHitter NNP 10_1101-2020_01_28_923532 184 16 ( ( -LRB- 10_1101-2020_01_28_923532 184 17 middle middle JJ 10_1101-2020_01_28_923532 184 18 row row NN 10_1101-2020_01_28_923532 184 19 plots plot NNS 10_1101-2020_01_28_923532 184 20 ) ) -RRB- 10_1101-2020_01_28_923532 184 21 and and CC 10_1101-2020_01_28_923532 184 22 a a DT 10_1101-2020_01_28_923532 184 23 greedy greedy JJ 10_1101-2020_01_28_923532 184 24 algorithm algorithm NN 10_1101-2020_01_28_923532 184 25 that that WDT 10_1101-2020_01_28_923532 184 26 tries try VBZ 10_1101-2020_01_28_923532 184 27 to to TO 10_1101-2020_01_28_923532 184 28 add add VB 10_1101-2020_01_28_923532 184 29 pairs pair NNS 10_1101-2020_01_28_923532 184 30 of of IN 10_1101-2020_01_28_923532 184 31 genes gene NNS 10_1101-2020_01_28_923532 184 32 at at IN 10_1101-2020_01_28_923532 184 33 a a DT 10_1101-2020_01_28_923532 184 34 time time NN 10_1101-2020_01_28_923532 184 35 ( ( -LRB- 10_1101-2020_01_28_923532 184 36 bottom bottom NN 10_1101-2020_01_28_923532 184 37 row row NN 10_1101-2020_01_28_923532 184 38 plots plot NNS 10_1101-2020_01_28_923532 184 39 ) ) -RRB- 10_1101-2020_01_28_923532 184 40 . . . 10_1101-2020_01_28_923532 185 1 In in IN 10_1101-2020_01_28_923532 185 2 each each DT 10_1101-2020_01_28_923532 185 3 plot plot NN 10_1101-2020_01_28_923532 185 4 , , , 10_1101-2020_01_28_923532 185 5 the the DT 10_1101-2020_01_28_923532 185 6 patients patient NNS 10_1101-2020_01_28_923532 185 7 are be VBP 10_1101-2020_01_28_923532 185 8 sorted sort VBN 10_1101-2020_01_28_923532 185 9 from from IN 10_1101-2020_01_28_923532 185 10 left leave VBN 10_1101-2020_01_28_923532 185 11 to to IN 10_1101-2020_01_28_923532 185 12 right right NN 10_1101-2020_01_28_923532 185 13 according accord VBG 10_1101-2020_01_28_923532 185 14 to to IN 10_1101-2020_01_28_923532 185 15 their -PRON- PRP$ 10_1101-2020_01_28_923532 185 16 mean mean JJ 10_1101-2020_01_28_923532 185 17 ITS its PRP$ 10_1101-2020_01_28_923532 185 18 values value NNS 10_1101-2020_01_28_923532 185 19 in in IN 10_1101-2020_01_28_923532 185 20 the the DT 10_1101-2020_01_28_923532 185 21 optimal optimal JJ 10_1101-2020_01_28_923532 185 22 stringent stringent JJ 10_1101-2020_01_28_923532 185 23 regime regime NN 10_1101-2020_01_28_923532 185 24 . . . 10_1101-2020_01_28_923532 186 1 Additional additional JJ 10_1101-2020_01_28_923532 186 2 comparisons comparison NNS 10_1101-2020_01_28_923532 186 3 between between IN 10_1101-2020_01_28_923532 186 4 ITS its PRP$ 10_1101-2020_01_28_923532 186 5 sizes size NNS 10_1101-2020_01_28_923532 186 6 at at IN 10_1101-2020_01_28_923532 186 7 different different JJ 10_1101-2020_01_28_923532 186 8 parameter parameter NN 10_1101-2020_01_28_923532 186 9 settings setting NNS 10_1101-2020_01_28_923532 186 10 can can MD 10_1101-2020_01_28_923532 186 11 be be VB 10_1101-2020_01_28_923532 186 12 found find VBN 10_1101-2020_01_28_923532 186 13 in in IN 10_1101-2020_01_28_923532 186 14 Supplementary Supplementary NNP 10_1101-2020_01_28_923532 186 15 Materials Materials NNP 10_1101-2020_01_28_923532 186 16 5 5 CD 10_1101-2020_01_28_923532 186 17 . . . 10_1101-2020_01_28_923532 187 1 Description description NN 10_1101-2020_01_28_923532 187 2 of of IN 10_1101-2020_01_28_923532 187 3 the the DT 10_1101-2020_01_28_923532 187 4 greedy greedy JJ 10_1101-2020_01_28_923532 187 5 algorithm algorithm NN 10_1101-2020_01_28_923532 187 6 and and CC 10_1101-2020_01_28_923532 187 7 more more JJR 10_1101-2020_01_28_923532 187 8 comparisons comparison NNS 10_1101-2020_01_28_923532 187 9 between between IN 10_1101-2020_01_28_923532 187 10 the the DT 10_1101-2020_01_28_923532 187 11 optimal optimal JJ 10_1101-2020_01_28_923532 187 12 and and CC 10_1101-2020_01_28_923532 187 13 greedy greedy JJ 10_1101-2020_01_28_923532 187 14 algorithms algorithm NNS 10_1101-2020_01_28_923532 187 15 are be VBP 10_1101-2020_01_28_923532 187 16 provided provide VBN 10_1101-2020_01_28_923532 187 17 in in IN 10_1101-2020_01_28_923532 187 18 Supplementary Supplementary NNP 10_1101-2020_01_28_923532 187 19 Materials Materials NNP 10_1101-2020_01_28_923532 187 20 8 8 CD 10_1101-2020_01_28_923532 187 21 . . . 10_1101-2020_01_28_923532 188 1 105 105 CD 10_1101-2020_01_28_923532 188 2 and and CC 10_1101-2020_01_28_923532 188 3 is be VBZ 10_1101-2020_01_28_923532 188 4 also also RB 10_1101-2020_01_28_923532 188 5 made make VBN 10_1101-2020_01_28_923532 188 6 available available JJ 10_1101-2020_01_28_923532 188 7 for for IN 10_1101-2020_01_28_923532 188 8 use use NN 10_1101-2020_01_28_923532 188 9 under under IN 10_1101-2020_01_28_923532 188 10 a a DT 10_1101-2020_01_28_923532 188 11 CC0 CC0 NNP 10_1101-2020_01_28_923532 188 12 license license NN 10_1101-2020_01_28_923532 188 13 . . . 10_1101-2020_01_28_923532 189 1 ( ( -LRB- 10_1101-2020_01_28_923532 189 2 which which WDT 10_1101-2020_01_28_923532 189 3 was be VBD 10_1101-2020_01_28_923532 189 4 not not RB 10_1101-2020_01_28_923532 189 5 certified certify VBN 10_1101-2020_01_28_923532 189 6 by by IN 10_1101-2020_01_28_923532 189 7 peer peer NN 10_1101-2020_01_28_923532 189 8 review review NN 10_1101-2020_01_28_923532 189 9 ) ) -RRB- 10_1101-2020_01_28_923532 189 10 is be VBZ 10_1101-2020_01_28_923532 189 11 the the DT 10_1101-2020_01_28_923532 189 12 author author NN 10_1101-2020_01_28_923532 189 13 / / SYM 10_1101-2020_01_28_923532 189 14 funder funder NN 10_1101-2020_01_28_923532 189 15 . . . 10_1101-2020_01_28_923532 190 1 This this DT 10_1101-2020_01_28_923532 190 2 article article NN 10_1101-2020_01_28_923532 190 3 is be VBZ 10_1101-2020_01_28_923532 190 4 a a DT 10_1101-2020_01_28_923532 190 5 US US NNP 10_1101-2020_01_28_923532 190 6 Government Government NNP 10_1101-2020_01_28_923532 190 7 work work NN 10_1101-2020_01_28_923532 190 8 . . . 10_1101-2020_01_28_923532 191 1 It -PRON- PRP 10_1101-2020_01_28_923532 191 2 is be VBZ 10_1101-2020_01_28_923532 191 3 not not RB 10_1101-2020_01_28_923532 191 4 subject subject JJ 10_1101-2020_01_28_923532 191 5 to to IN 10_1101-2020_01_28_923532 191 6 copyright copyright NN 10_1101-2020_01_28_923532 191 7 under under IN 10_1101-2020_01_28_923532 191 8 17 17 CD 10_1101-2020_01_28_923532 191 9 USC usc NN 10_1101-2020_01_28_923532 191 10 The the DT 10_1101-2020_01_28_923532 191 11 copyright copyright NN 10_1101-2020_01_28_923532 191 12 holder holder NN 10_1101-2020_01_28_923532 191 13 for for IN 10_1101-2020_01_28_923532 191 14 this this DT 10_1101-2020_01_28_923532 191 15 preprintthis preprintthis NN 10_1101-2020_01_28_923532 191 16 version version NN 10_1101-2020_01_28_923532 191 17 posted post VBD 10_1101-2020_01_28_923532 191 18 February February NNP 10_1101-2020_01_28_923532 191 19 12 12 CD 10_1101-2020_01_28_923532 191 20 , , , 10_1101-2020_01_28_923532 191 21 2021 2021 CD 10_1101-2020_01_28_923532 191 22 . . . 10_1101-2020_01_28_923532 191 23 ; ; : 10_1101-2020_01_28_923532 191 24 https://doi.org/10.1101/2020.01.28.923532doi https://doi.org/10.1101/2020.01.28.923532doi ADD 10_1101-2020_01_28_923532 191 25 : : : 10_1101-2020_01_28_923532 191 26 bioRxiv biorxiv VB 10_1101-2020_01_28_923532 191 27 preprint preprint NN 10_1101-2020_01_28_923532 191 28 https://doi.org/10.1101/2020.01.28.923532 https://doi.org/10.1101/2020.01.28.923532 UH 10_1101-2020_01_28_923532 191 29 16 16 CD 10_1101-2020_01_28_923532 191 30 The the DT 10_1101-2020_01_28_923532 191 31 Landscape Landscape NNP 10_1101-2020_01_28_923532 191 32 of of IN 10_1101-2020_01_28_923532 191 33 Combinations Combinations NNPS 10_1101-2020_01_28_923532 191 34 Achievable achievable JJ 10_1101-2020_01_28_923532 191 35 with with IN 10_1101-2020_01_28_923532 191 36 Receptors receptor NNS 10_1101-2020_01_28_923532 191 37 Currently currently RB 10_1101-2020_01_28_923532 191 38 Targetable Targetable NNP 10_1101-2020_01_28_923532 191 39 by by IN 10_1101-2020_01_28_923532 191 40 Published publish VBN 10_1101-2020_01_28_923532 191 41 Ligand Ligand NNP 10_1101-2020_01_28_923532 191 42 - - HYPH 10_1101-2020_01_28_923532 191 43 Mimicking Mimicking NNP 10_1101-2020_01_28_923532 191 44 Peptides Peptides NNPS 10_1101-2020_01_28_923532 191 45 To to TO 10_1101-2020_01_28_923532 191 46 get get VB 10_1101-2020_01_28_923532 191 47 a a DT 10_1101-2020_01_28_923532 191 48 view view NN 10_1101-2020_01_28_923532 191 49 of of IN 10_1101-2020_01_28_923532 191 50 the the DT 10_1101-2020_01_28_923532 191 51 combination combination NN 10_1101-2020_01_28_923532 191 52 treatments treatment NNS 10_1101-2020_01_28_923532 191 53 that that WDT 10_1101-2020_01_28_923532 191 54 are be VBP 10_1101-2020_01_28_923532 191 55 possible possible JJ 10_1101-2020_01_28_923532 191 56 with with IN 10_1101-2020_01_28_923532 191 57 receptor receptor NN 10_1101-2020_01_28_923532 191 58 targets target NNS 10_1101-2020_01_28_923532 191 59 for for IN 10_1101-2020_01_28_923532 191 60 which which WDT 10_1101-2020_01_28_923532 191 61 there there EX 10_1101-2020_01_28_923532 191 62 are be VBP 10_1101-2020_01_28_923532 191 63 already already RB 10_1101-2020_01_28_923532 191 64 existing exist VBG 10_1101-2020_01_28_923532 191 65 modular modular JJ 10_1101-2020_01_28_923532 191 66 targeting target VBG 10_1101-2020_01_28_923532 191 67 reagents reagent NNS 10_1101-2020_01_28_923532 191 68 , , , 10_1101-2020_01_28_923532 191 69 we -PRON- PRP 10_1101-2020_01_28_923532 191 70 conducted conduct VBD 10_1101-2020_01_28_923532 191 71 a a DT 10_1101-2020_01_28_923532 191 72 literature literature NN 10_1101-2020_01_28_923532 191 73 search search NN 10_1101-2020_01_28_923532 191 74 identifying identify VBG 10_1101-2020_01_28_923532 191 75 58 58 CD 10_1101-2020_01_28_923532 191 76 out out IN 10_1101-2020_01_28_923532 191 77 of of IN 10_1101-2020_01_28_923532 191 78 the the DT 10_1101-2020_01_28_923532 191 79 1269 1269 CD 10_1101-2020_01_28_923532 191 80 genes gene NNS 10_1101-2020_01_28_923532 191 81 with with IN 10_1101-2020_01_28_923532 191 82 published publish VBN 10_1101-2020_01_28_923532 191 83 ligand ligand NN 10_1101-2020_01_28_923532 191 84 - - HYPH 10_1101-2020_01_28_923532 191 85 mimicking mimicking NN 10_1101-2020_01_28_923532 191 86 peptides peptide NNS 10_1101-2020_01_28_923532 191 87 that that WDT 10_1101-2020_01_28_923532 191 88 have have VBP 10_1101-2020_01_28_923532 191 89 been be VBN 10_1101-2020_01_28_923532 191 90 already already RB 10_1101-2020_01_28_923532 191 91 tested test VBN 10_1101-2020_01_28_923532 191 92 in in RP 10_1101-2020_01_28_923532 191 93 in in FW 10_1101-2020_01_28_923532 191 94 vitro vitro FW 10_1101-2020_01_28_923532 191 95 models model NNS 10_1101-2020_01_28_923532 191 96 , , , 10_1101-2020_01_28_923532 191 97 usually usually RB 10_1101-2020_01_28_923532 191 98 cancer cancer NN 10_1101-2020_01_28_923532 191 99 models model NNS 10_1101-2020_01_28_923532 191 100 ( ( -LRB- 10_1101-2020_01_28_923532 191 101 Methods method NNS 10_1101-2020_01_28_923532 191 102 ; ; : 10_1101-2020_01_28_923532 191 103 Tables table NNS 10_1101-2020_01_28_923532 191 104 3 3 CD 10_1101-2020_01_28_923532 191 105 and and CC 10_1101-2020_01_28_923532 191 106 4 4 CD 10_1101-2020_01_28_923532 191 107 ) ) -RRB- 10_1101-2020_01_28_923532 191 108 . . . 10_1101-2020_01_28_923532 192 1 We -PRON- PRP 10_1101-2020_01_28_923532 192 2 asked ask VBD 10_1101-2020_01_28_923532 192 3 whether whether IN 10_1101-2020_01_28_923532 192 4 we -PRON- PRP 10_1101-2020_01_28_923532 192 5 could could MD 10_1101-2020_01_28_923532 192 6 find find VB 10_1101-2020_01_28_923532 192 7 feasible feasible JJ 10_1101-2020_01_28_923532 192 8 optimal optimal JJ 10_1101-2020_01_28_923532 192 9 combinations combination NNS 10_1101-2020_01_28_923532 192 10 in in IN 10_1101-2020_01_28_923532 192 11 this this DT 10_1101-2020_01_28_923532 192 12 case case NN 10_1101-2020_01_28_923532 192 13 and and CC 10_1101-2020_01_28_923532 192 14 if if IN 10_1101-2020_01_28_923532 192 15 so so RB 10_1101-2020_01_28_923532 192 16 , , , 10_1101-2020_01_28_923532 192 17 how how WRB 10_1101-2020_01_28_923532 192 18 do do VBP 10_1101-2020_01_28_923532 192 19 the the DT 10_1101-2020_01_28_923532 192 20 optimal optimal JJ 10_1101-2020_01_28_923532 192 21 CTS CTS NNP 10_1101-2020_01_28_923532 192 22 and and CC 10_1101-2020_01_28_923532 192 23 ITS its PRP$ 10_1101-2020_01_28_923532 192 24 sizes size NNS 10_1101-2020_01_28_923532 192 25 compare compare VBP 10_1101-2020_01_28_923532 192 26 vs. vs. IN 10_1101-2020_01_28_923532 192 27 those those DT 10_1101-2020_01_28_923532 192 28 computed compute VBN 10_1101-2020_01_28_923532 192 29 for for IN 10_1101-2020_01_28_923532 192 30 all all DT 10_1101-2020_01_28_923532 192 31 1269 1269 CD 10_1101-2020_01_28_923532 192 32 genes gene NNS 10_1101-2020_01_28_923532 192 33 ? ? . 10_1101-2020_01_28_923532 193 1 Figure figure NN 10_1101-2020_01_28_923532 193 2 5 5 CD 10_1101-2020_01_28_923532 193 3 . . . 10_1101-2020_01_28_923532 194 1 Comparison comparison NN 10_1101-2020_01_28_923532 194 2 of of IN 10_1101-2020_01_28_923532 194 3 Individual Individual NNP 10_1101-2020_01_28_923532 194 4 Target Target NNP 10_1101-2020_01_28_923532 194 5 Set Set NNP 10_1101-2020_01_28_923532 194 6 Sizes size NNS 10_1101-2020_01_28_923532 194 7 with with IN 10_1101-2020_01_28_923532 194 8 1269 1269 CD 10_1101-2020_01_28_923532 194 9 or or CC 10_1101-2020_01_28_923532 194 10 58 58 CD 10_1101-2020_01_28_923532 194 11 targets target NNS 10_1101-2020_01_28_923532 194 12 for for IN 10_1101-2020_01_28_923532 194 13 three three CD 10_1101-2020_01_28_923532 194 14 out out IN 10_1101-2020_01_28_923532 194 15 of of IN 10_1101-2020_01_28_923532 194 16 the the DT 10_1101-2020_01_28_923532 194 17 six six CD 10_1101-2020_01_28_923532 194 18 data data NN 10_1101-2020_01_28_923532 194 19 sets set NNS 10_1101-2020_01_28_923532 194 20 that that WDT 10_1101-2020_01_28_923532 194 21 have have VBP 10_1101-2020_01_28_923532 194 22 feasible feasible JJ 10_1101-2020_01_28_923532 194 23 solutions solution NNS 10_1101-2020_01_28_923532 194 24 . . . 10_1101-2020_01_28_923532 195 1 We -PRON- PRP 10_1101-2020_01_28_923532 195 2 attempted attempt VBD 10_1101-2020_01_28_923532 195 3 to to TO 10_1101-2020_01_28_923532 195 4 find find VB 10_1101-2020_01_28_923532 195 5 feasible feasible JJ 10_1101-2020_01_28_923532 195 6 solutions solution NNS 10_1101-2020_01_28_923532 195 7 for for IN 10_1101-2020_01_28_923532 195 8 all all DT 10_1101-2020_01_28_923532 195 9 patients patient NNS 10_1101-2020_01_28_923532 195 10 using use VBG 10_1101-2020_01_28_923532 195 11 58 58 CD 10_1101-2020_01_28_923532 195 12 cell cell NN 10_1101-2020_01_28_923532 195 13 surface surface NN 10_1101-2020_01_28_923532 195 14 receptors receptor NNS 10_1101-2020_01_28_923532 195 15 that that WDT 10_1101-2020_01_28_923532 195 16 have have VBP 10_1101-2020_01_28_923532 195 17 published publish VBN 10_1101-2020_01_28_923532 195 18 ligand ligand NN 10_1101-2020_01_28_923532 195 19 - - HYPH 10_1101-2020_01_28_923532 195 20 mimicking mimicking NN 10_1101-2020_01_28_923532 195 21 peptides peptide NNS 10_1101-2020_01_28_923532 195 22 that that WDT 10_1101-2020_01_28_923532 195 23 have have VBP 10_1101-2020_01_28_923532 195 24 been be VBN 10_1101-2020_01_28_923532 195 25 tested test VBN 10_1101-2020_01_28_923532 195 26 in in IN 10_1101-2020_01_28_923532 195 27 vitro vitro FW 10_1101-2020_01_28_923532 195 28 or or CC 10_1101-2020_01_28_923532 195 29 in in IN 10_1101-2020_01_28_923532 195 30 pre pre JJ 10_1101-2020_01_28_923532 195 31 - - JJ 10_1101-2020_01_28_923532 195 32 clinical clinical JJ 10_1101-2020_01_28_923532 195 33 models model NNS 10_1101-2020_01_28_923532 195 34 . . . 10_1101-2020_01_28_923532 196 1 There there EX 10_1101-2020_01_28_923532 196 2 are be VBP 10_1101-2020_01_28_923532 196 3 feasible feasible JJ 10_1101-2020_01_28_923532 196 4 solutions solution NNS 10_1101-2020_01_28_923532 196 5 for for IN 10_1101-2020_01_28_923532 196 6 all all DT 10_1101-2020_01_28_923532 196 7 patients patient NNS 10_1101-2020_01_28_923532 196 8 in in IN 10_1101-2020_01_28_923532 196 9 six six CD 10_1101-2020_01_28_923532 196 10 data data NN 10_1101-2020_01_28_923532 196 11 sets set NNS 10_1101-2020_01_28_923532 196 12 , , , 10_1101-2020_01_28_923532 196 13 but but CC 10_1101-2020_01_28_923532 196 14 not not RB 10_1101-2020_01_28_923532 196 15 for for IN 10_1101-2020_01_28_923532 196 16 the the DT 10_1101-2020_01_28_923532 196 17 brain brain NN 10_1101-2020_01_28_923532 196 18 ( ( -LRB- 10_1101-2020_01_28_923532 196 19 GSE84465 GSE84465 NNP 10_1101-2020_01_28_923532 196 20 ) ) -RRB- 10_1101-2020_01_28_923532 196 21 , , , 10_1101-2020_01_28_923532 196 22 melanoma melanoma NNP 10_1101-2020_01_28_923532 196 23 ( ( -LRB- 10_1101-2020_01_28_923532 196 24 GSE115978 GSE115978 NNP 10_1101-2020_01_28_923532 196 25 ) ) -RRB- 10_1101-2020_01_28_923532 196 26 , , , 10_1101-2020_01_28_923532 196 27 and and CC 10_1101-2020_01_28_923532 196 28 lung lung NN 10_1101-2020_01_28_923532 196 29 ( ( -LRB- 10_1101-2020_01_28_923532 196 30 E E NNP 10_1101-2020_01_28_923532 196 31 - - NNP 10_1101-2020_01_28_923532 196 32 MTAB-6149 MTAB-6149 NNP 10_1101-2020_01_28_923532 196 33 ) ) -RRB- 10_1101-2020_01_28_923532 196 34 , , , 10_1101-2020_01_28_923532 196 35 which which WDT 10_1101-2020_01_28_923532 196 36 were be VBD 10_1101-2020_01_28_923532 196 37 displayed display VBN 10_1101-2020_01_28_923532 196 38 in in IN 10_1101-2020_01_28_923532 196 39 previous previous JJ 10_1101-2020_01_28_923532 196 40 figures figure NNS 10_1101-2020_01_28_923532 196 41 . . . 10_1101-2020_01_28_923532 197 1 Instead instead RB 10_1101-2020_01_28_923532 197 2 , , , 10_1101-2020_01_28_923532 197 3 we -PRON- PRP 10_1101-2020_01_28_923532 197 4 show show VBP 10_1101-2020_01_28_923532 197 5 here here RB 10_1101-2020_01_28_923532 197 6 results result VBZ 10_1101-2020_01_28_923532 197 7 for for IN 10_1101-2020_01_28_923532 197 8 breast breast NN 10_1101-2020_01_28_923532 197 9 and and CC 10_1101-2020_01_28_923532 197 10 colorectal colorectal JJ 10_1101-2020_01_28_923532 197 11 cancers cancer NNS 10_1101-2020_01_28_923532 197 12 , , , 10_1101-2020_01_28_923532 197 13 for for IN 10_1101-2020_01_28_923532 197 14 which which WDT 10_1101-2020_01_28_923532 197 15 other other JJ 10_1101-2020_01_28_923532 197 16 analyses analysis NNS 10_1101-2020_01_28_923532 197 17 , , , 10_1101-2020_01_28_923532 197 18 such such JJ 10_1101-2020_01_28_923532 197 19 as as IN 10_1101-2020_01_28_923532 197 20 those those DT 10_1101-2020_01_28_923532 197 21 in in IN 10_1101-2020_01_28_923532 197 22 Figures Figures NNP 10_1101-2020_01_28_923532 197 23 3 3 CD 10_1101-2020_01_28_923532 197 24 and and CC 10_1101-2020_01_28_923532 197 25 4 4 CD 10_1101-2020_01_28_923532 197 26 , , , 10_1101-2020_01_28_923532 197 27 are be VBP 10_1101-2020_01_28_923532 197 28 in in IN 10_1101-2020_01_28_923532 197 29 the the DT 10_1101-2020_01_28_923532 197 30 Supplementary Supplementary NNP 10_1101-2020_01_28_923532 197 31 Materials Materials NNPS 10_1101-2020_01_28_923532 197 32 . . . 10_1101-2020_01_28_923532 198 1 Some some DT 10_1101-2020_01_28_923532 198 2 of of IN 10_1101-2020_01_28_923532 198 3 the the DT 10_1101-2020_01_28_923532 198 4 optimal optimal JJ 10_1101-2020_01_28_923532 198 5 solutions solution NNS 10_1101-2020_01_28_923532 198 6 obtained obtain VBN 10_1101-2020_01_28_923532 198 7 on on IN 10_1101-2020_01_28_923532 198 8 the the DT 10_1101-2020_01_28_923532 198 9 58-receptors 58-receptors CD 10_1101-2020_01_28_923532 198 10 restricted restricted JJ 10_1101-2020_01_28_923532 198 11 set set NN 10_1101-2020_01_28_923532 198 12 are be VBP 10_1101-2020_01_28_923532 198 13 of of IN 10_1101-2020_01_28_923532 198 14 the the DT 10_1101-2020_01_28_923532 198 15 same same JJ 10_1101-2020_01_28_923532 198 16 size size NN 10_1101-2020_01_28_923532 198 17 to to IN 10_1101-2020_01_28_923532 198 18 those those DT 10_1101-2020_01_28_923532 198 19 obtained obtain VBN 10_1101-2020_01_28_923532 198 20 on on IN 10_1101-2020_01_28_923532 198 21 the the DT 10_1101-2020_01_28_923532 198 22 whole whole JJ 10_1101-2020_01_28_923532 198 23 receptors receptor NNS 10_1101-2020_01_28_923532 198 24 set set VBN 10_1101-2020_01_28_923532 198 25 and and CC 10_1101-2020_01_28_923532 198 26 some some DT 10_1101-2020_01_28_923532 198 27 are be VBP 10_1101-2020_01_28_923532 198 28 larger large JJR 10_1101-2020_01_28_923532 198 29 . . . 10_1101-2020_01_28_923532 199 1 Computing compute VBG 10_1101-2020_01_28_923532 199 2 the the DT 10_1101-2020_01_28_923532 199 3 optimal optimal JJ 10_1101-2020_01_28_923532 199 4 CTS CTS NNP 10_1101-2020_01_28_923532 199 5 and and CC 10_1101-2020_01_28_923532 199 6 ITS its PRP$ 10_1101-2020_01_28_923532 199 7 solutions solution NNS 10_1101-2020_01_28_923532 199 8 for for IN 10_1101-2020_01_28_923532 199 9 this this DT 10_1101-2020_01_28_923532 199 10 basket basket NN 10_1101-2020_01_28_923532 199 11 of of IN 10_1101-2020_01_28_923532 199 12 58 58 CD 10_1101-2020_01_28_923532 199 13 targets target NNS 10_1101-2020_01_28_923532 199 14 , , , 10_1101-2020_01_28_923532 199 15 we -PRON- PRP 10_1101-2020_01_28_923532 199 16 found find VBD 10_1101-2020_01_28_923532 199 17 feasible feasible JJ 10_1101-2020_01_28_923532 199 18 solutions solution NNS 10_1101-2020_01_28_923532 199 19 for for IN 10_1101-2020_01_28_923532 199 20 six six CD 10_1101-2020_01_28_923532 199 21 of of IN 10_1101-2020_01_28_923532 199 22 the the DT 10_1101-2020_01_28_923532 199 23 data data NN 10_1101-2020_01_28_923532 199 24 sets set NNS 10_1101-2020_01_28_923532 199 25 across across IN 10_1101-2020_01_28_923532 199 26 all all DT 10_1101-2020_01_28_923532 199 27 parameter parameter NN 10_1101-2020_01_28_923532 199 28 combinations combination NNS 10_1101-2020_01_28_923532 199 29 we -PRON- PRP 10_1101-2020_01_28_923532 199 30 surveyed survey VBD 10_1101-2020_01_28_923532 199 31 and and CC 10_1101-2020_01_28_923532 199 32 105 105 CD 10_1101-2020_01_28_923532 199 33 and and CC 10_1101-2020_01_28_923532 199 34 is be VBZ 10_1101-2020_01_28_923532 199 35 also also RB 10_1101-2020_01_28_923532 199 36 made make VBN 10_1101-2020_01_28_923532 199 37 available available JJ 10_1101-2020_01_28_923532 199 38 for for IN 10_1101-2020_01_28_923532 199 39 use use NN 10_1101-2020_01_28_923532 199 40 under under IN 10_1101-2020_01_28_923532 199 41 a a DT 10_1101-2020_01_28_923532 199 42 CC0 CC0 NNP 10_1101-2020_01_28_923532 199 43 license license NN 10_1101-2020_01_28_923532 199 44 . . . 10_1101-2020_01_28_923532 200 1 ( ( -LRB- 10_1101-2020_01_28_923532 200 2 which which WDT 10_1101-2020_01_28_923532 200 3 was be VBD 10_1101-2020_01_28_923532 200 4 not not RB 10_1101-2020_01_28_923532 200 5 certified certify VBN 10_1101-2020_01_28_923532 200 6 by by IN 10_1101-2020_01_28_923532 200 7 peer peer NN 10_1101-2020_01_28_923532 200 8 review review NN 10_1101-2020_01_28_923532 200 9 ) ) -RRB- 10_1101-2020_01_28_923532 200 10 is be VBZ 10_1101-2020_01_28_923532 200 11 the the DT 10_1101-2020_01_28_923532 200 12 author author NN 10_1101-2020_01_28_923532 200 13 / / SYM 10_1101-2020_01_28_923532 200 14 funder funder NN 10_1101-2020_01_28_923532 200 15 . . . 10_1101-2020_01_28_923532 201 1 This this DT 10_1101-2020_01_28_923532 201 2 article article NN 10_1101-2020_01_28_923532 201 3 is be VBZ 10_1101-2020_01_28_923532 201 4 a a DT 10_1101-2020_01_28_923532 201 5 US US NNP 10_1101-2020_01_28_923532 201 6 Government Government NNP 10_1101-2020_01_28_923532 201 7 work work NN 10_1101-2020_01_28_923532 201 8 . . . 10_1101-2020_01_28_923532 202 1 It -PRON- PRP 10_1101-2020_01_28_923532 202 2 is be VBZ 10_1101-2020_01_28_923532 202 3 not not RB 10_1101-2020_01_28_923532 202 4 subject subject JJ 10_1101-2020_01_28_923532 202 5 to to IN 10_1101-2020_01_28_923532 202 6 copyright copyright NN 10_1101-2020_01_28_923532 202 7 under under IN 10_1101-2020_01_28_923532 202 8 17 17 CD 10_1101-2020_01_28_923532 202 9 USC usc NN 10_1101-2020_01_28_923532 202 10 The the DT 10_1101-2020_01_28_923532 202 11 copyright copyright NN 10_1101-2020_01_28_923532 202 12 holder holder NN 10_1101-2020_01_28_923532 202 13 for for IN 10_1101-2020_01_28_923532 202 14 this this DT 10_1101-2020_01_28_923532 202 15 preprintthis preprintthis NN 10_1101-2020_01_28_923532 202 16 version version NN 10_1101-2020_01_28_923532 202 17 posted post VBD 10_1101-2020_01_28_923532 202 18 February February NNP 10_1101-2020_01_28_923532 202 19 12 12 CD 10_1101-2020_01_28_923532 202 20 , , , 10_1101-2020_01_28_923532 202 21 2021 2021 CD 10_1101-2020_01_28_923532 202 22 . . . 10_1101-2020_01_28_923532 202 23 ; ; : 10_1101-2020_01_28_923532 202 24 https://doi.org/10.1101/2020.01.28.923532doi https://doi.org/10.1101/2020.01.28.923532doi ADD 10_1101-2020_01_28_923532 202 25 : : : 10_1101-2020_01_28_923532 202 26 bioRxiv biorxiv VB 10_1101-2020_01_28_923532 202 27 preprint preprint NN 10_1101-2020_01_28_923532 202 28 https://doi.org/10.1101/2020.01.28.923532 https://doi.org/10.1101/2020.01.28.923532 UH 10_1101-2020_01_28_923532 202 29 17 17 CD 10_1101-2020_01_28_923532 202 30 three three CD 10_1101-2020_01_28_923532 202 31 of of IN 10_1101-2020_01_28_923532 202 32 these these DT 10_1101-2020_01_28_923532 202 33 six six CD 10_1101-2020_01_28_923532 202 34 are be VBP 10_1101-2020_01_28_923532 202 35 illustrated illustrate VBN 10_1101-2020_01_28_923532 202 36 for for IN 10_1101-2020_01_28_923532 202 37 each each DT 10_1101-2020_01_28_923532 202 38 patient patient NN 10_1101-2020_01_28_923532 202 39 in in IN 10_1101-2020_01_28_923532 202 40 Figure Figure NNP 10_1101-2020_01_28_923532 202 41 5 5 CD 10_1101-2020_01_28_923532 202 42 . . . 10_1101-2020_01_28_923532 203 1 However however RB 10_1101-2020_01_28_923532 203 2 , , , 10_1101-2020_01_28_923532 203 3 for for IN 10_1101-2020_01_28_923532 203 4 three three CD 10_1101-2020_01_28_923532 203 5 data datum NNS 10_1101-2020_01_28_923532 203 6 sets set NNS 10_1101-2020_01_28_923532 203 7 , , , 10_1101-2020_01_28_923532 203 8 in in IN 10_1101-2020_01_28_923532 203 9 numerous numerous JJ 10_1101-2020_01_28_923532 203 10 parameter parameter NN 10_1101-2020_01_28_923532 203 11 combinations combination NNS 10_1101-2020_01_28_923532 203 12 we -PRON- PRP 10_1101-2020_01_28_923532 203 13 could could MD 10_1101-2020_01_28_923532 203 14 not not RB 10_1101-2020_01_28_923532 203 15 find find VB 10_1101-2020_01_28_923532 203 16 optimal optimal JJ 10_1101-2020_01_28_923532 203 17 solutions solution NNS 10_1101-2020_01_28_923532 203 18 that that WDT 10_1101-2020_01_28_923532 203 19 satisfy satisfy VBP 10_1101-2020_01_28_923532 203 20 the the DT 10_1101-2020_01_28_923532 203 21 optimization optimization NN 10_1101-2020_01_28_923532 203 22 constraints constraint NNS 10_1101-2020_01_28_923532 203 23 ( ( -LRB- 10_1101-2020_01_28_923532 203 24 Supplementary Supplementary NNP 10_1101-2020_01_28_923532 203 25 Materials Materials NNP 10_1101-2020_01_28_923532 203 26 9 9 CD 10_1101-2020_01_28_923532 203 27 , , , 10_1101-2020_01_28_923532 203 28 Figures Figures NNPS 10_1101-2020_01_28_923532 203 29 S16-S18 S16-S18 NNP 10_1101-2020_01_28_923532 203 30 ) ) -RRB- 10_1101-2020_01_28_923532 203 31 . . . 10_1101-2020_01_28_923532 204 1 That that RB 10_1101-2020_01_28_923532 204 2 is is RB 10_1101-2020_01_28_923532 204 3 , , , 10_1101-2020_01_28_923532 204 4 the the DT 10_1101-2020_01_28_923532 204 5 currently currently RB 10_1101-2020_01_28_923532 204 6 available available JJ 10_1101-2020_01_28_923532 204 7 targets target NNS 10_1101-2020_01_28_923532 204 8 do do VBP 10_1101-2020_01_28_923532 204 9 not not RB 10_1101-2020_01_28_923532 204 10 allow allow VB 10_1101-2020_01_28_923532 204 11 one one PRP 10_1101-2020_01_28_923532 204 12 to to TO 10_1101-2020_01_28_923532 204 13 design design VB 10_1101-2020_01_28_923532 204 14 treatments treatment NNS 10_1101-2020_01_28_923532 204 15 that that WDT 10_1101-2020_01_28_923532 204 16 may may MD 10_1101-2020_01_28_923532 204 17 achieve achieve VB 10_1101-2020_01_28_923532 204 18 the the DT 10_1101-2020_01_28_923532 204 19 specified specify VBN 10_1101-2020_01_28_923532 204 20 selective selective JJ 10_1101-2020_01_28_923532 204 21 killing killing NN 10_1101-2020_01_28_923532 204 22 objectives objective NNS 10_1101-2020_01_28_923532 204 23 , , , 10_1101-2020_01_28_923532 204 24 underscoring underscore VBG 10_1101-2020_01_28_923532 204 25 the the DT 10_1101-2020_01_28_923532 204 26 need need NN 10_1101-2020_01_28_923532 204 27 to to TO 10_1101-2020_01_28_923532 204 28 develop develop VB 10_1101-2020_01_28_923532 204 29 new new JJ 10_1101-2020_01_28_923532 204 30 targeted target VBN 10_1101-2020_01_28_923532 204 31 cancer cancer NN 10_1101-2020_01_28_923532 204 32 therapies therapy NNS 10_1101-2020_01_28_923532 204 33 , , , 10_1101-2020_01_28_923532 204 34 to to TO 10_1101-2020_01_28_923532 204 35 make make VB 10_1101-2020_01_28_923532 204 36 personalized personalized JJ 10_1101-2020_01_28_923532 204 37 medicine medicine NN 10_1101-2020_01_28_923532 204 38 more more RBR 10_1101-2020_01_28_923532 204 39 effective effective JJ 10_1101-2020_01_28_923532 204 40 for for IN 10_1101-2020_01_28_923532 204 41 more more JJR 10_1101-2020_01_28_923532 204 42 patients patient NNS 10_1101-2020_01_28_923532 204 43 . . . 10_1101-2020_01_28_923532 205 1 Overall overall RB 10_1101-2020_01_28_923532 205 2 , , , 10_1101-2020_01_28_923532 205 3 comparing compare VBG 10_1101-2020_01_28_923532 205 4 the the DT 10_1101-2020_01_28_923532 205 5 optimal optimal JJ 10_1101-2020_01_28_923532 205 6 solutions solution NNS 10_1101-2020_01_28_923532 205 7 obtained obtain VBN 10_1101-2020_01_28_923532 205 8 with with IN 10_1101-2020_01_28_923532 205 9 58 58 CD 10_1101-2020_01_28_923532 205 10 targets target NNS 10_1101-2020_01_28_923532 205 11 to to IN 10_1101-2020_01_28_923532 205 12 those those DT 10_1101-2020_01_28_923532 205 13 we -PRON- PRP 10_1101-2020_01_28_923532 205 14 have have VBP 10_1101-2020_01_28_923532 205 15 obtained obtain VBN 10_1101-2020_01_28_923532 205 16 with with IN 10_1101-2020_01_28_923532 205 17 the the DT 10_1101-2020_01_28_923532 205 18 1269 1269 CD 10_1101-2020_01_28_923532 205 19 targets target NNS 10_1101-2020_01_28_923532 205 20 , , , 10_1101-2020_01_28_923532 205 21 three three CD 10_1101-2020_01_28_923532 205 22 qualitatively qualitatively RB 10_1101-2020_01_28_923532 205 23 different different JJ 10_1101-2020_01_28_923532 205 24 behaviors behavior NNS 10_1101-2020_01_28_923532 205 25 are be VBP 10_1101-2020_01_28_923532 205 26 observed observe VBN 10_1101-2020_01_28_923532 205 27 ( ( -LRB- 10_1101-2020_01_28_923532 205 28 Supplementary Supplementary NNP 10_1101-2020_01_28_923532 205 29 Materials Materials NNP 10_1101-2020_01_28_923532 205 30 9 9 CD 10_1101-2020_01_28_923532 205 31 , , , 10_1101-2020_01_28_923532 205 32 Figures Figures NNPS 10_1101-2020_01_28_923532 205 33 S16-S18 S16-S18 NNP 10_1101-2020_01_28_923532 205 34 ) ) -RRB- 10_1101-2020_01_28_923532 205 35 : : : 10_1101-2020_01_28_923532 205 36 ( ( -LRB- 10_1101-2020_01_28_923532 205 37 1 1 LS 10_1101-2020_01_28_923532 205 38 ) ) -RRB- 10_1101-2020_01_28_923532 205 39 In in IN 10_1101-2020_01_28_923532 205 40 some some DT 10_1101-2020_01_28_923532 205 41 datasets dataset NNS 10_1101-2020_01_28_923532 205 42 , , , 10_1101-2020_01_28_923532 205 43 it -PRON- PRP 10_1101-2020_01_28_923532 205 44 is be VBZ 10_1101-2020_01_28_923532 205 45 just just RB 10_1101-2020_01_28_923532 205 46 a a DT 10_1101-2020_01_28_923532 205 47 little little JJ 10_1101-2020_01_28_923532 205 48 bit bit NN 10_1101-2020_01_28_923532 205 49 more more RBR 10_1101-2020_01_28_923532 205 50 difficult difficult JJ 10_1101-2020_01_28_923532 205 51 to to TO 10_1101-2020_01_28_923532 205 52 find find VB 10_1101-2020_01_28_923532 205 53 optimal optimal JJ 10_1101-2020_01_28_923532 205 54 ITS ITS NNP 10_1101-2020_01_28_923532 205 55 and and CC 10_1101-2020_01_28_923532 205 56 CTS CTS NNP 10_1101-2020_01_28_923532 205 57 solutions solution NNS 10_1101-2020_01_28_923532 205 58 with with IN 10_1101-2020_01_28_923532 205 59 the the DT 10_1101-2020_01_28_923532 205 60 58-gene 58-gene CD 10_1101-2020_01_28_923532 205 61 pool pool NN 10_1101-2020_01_28_923532 205 62 , , , 10_1101-2020_01_28_923532 205 63 while while IN 10_1101-2020_01_28_923532 205 64 in in IN 10_1101-2020_01_28_923532 205 65 others other NNS 10_1101-2020_01_28_923532 205 66 , , , 10_1101-2020_01_28_923532 205 67 the the DT 10_1101-2020_01_28_923532 205 68 restriction restriction NN 10_1101-2020_01_28_923532 205 69 to to IN 10_1101-2020_01_28_923532 205 70 a a DT 10_1101-2020_01_28_923532 205 71 smaller small JJR 10_1101-2020_01_28_923532 205 72 pool pool NN 10_1101-2020_01_28_923532 205 73 can can MD 10_1101-2020_01_28_923532 205 74 be be VB 10_1101-2020_01_28_923532 205 75 a a DT 10_1101-2020_01_28_923532 205 76 severe severe JJ 10_1101-2020_01_28_923532 205 77 constraint constraint NN 10_1101-2020_01_28_923532 205 78 making make VBG 10_1101-2020_01_28_923532 205 79 the the DT 10_1101-2020_01_28_923532 205 80 optimization optimization NN 10_1101-2020_01_28_923532 205 81 problem problem NN 10_1101-2020_01_28_923532 205 82 infeasible infeasible JJ 10_1101-2020_01_28_923532 205 83 . . . 10_1101-2020_01_28_923532 206 1 ( ( -LRB- 10_1101-2020_01_28_923532 206 2 2 2 LS 10_1101-2020_01_28_923532 206 3 ) ) -RRB- 10_1101-2020_01_28_923532 206 4 The the DT 10_1101-2020_01_28_923532 206 5 smaller small JJR 10_1101-2020_01_28_923532 206 6 basket basket NN 10_1101-2020_01_28_923532 206 7 of of IN 10_1101-2020_01_28_923532 206 8 gene gene NN 10_1101-2020_01_28_923532 206 9 targets target NNS 10_1101-2020_01_28_923532 206 10 may may MD 10_1101-2020_01_28_923532 206 11 force force VB 10_1101-2020_01_28_923532 206 12 more more JJR 10_1101-2020_01_28_923532 206 13 patients patient NNS 10_1101-2020_01_28_923532 206 14 to to TO 10_1101-2020_01_28_923532 206 15 receive receive VB 10_1101-2020_01_28_923532 206 16 similar similar JJ 10_1101-2020_01_28_923532 206 17 individual individual JJ 10_1101-2020_01_28_923532 206 18 treatment treatment NN 10_1101-2020_01_28_923532 206 19 sets set NNS 10_1101-2020_01_28_923532 206 20 and and CC 10_1101-2020_01_28_923532 206 21 thereby thereby RB 10_1101-2020_01_28_923532 206 22 reduces reduce VBZ 10_1101-2020_01_28_923532 206 23 the the DT 10_1101-2020_01_28_923532 206 24 size size NN 10_1101-2020_01_28_923532 206 25 of of IN 10_1101-2020_01_28_923532 206 26 the the DT 10_1101-2020_01_28_923532 206 27 CTS CTS NNP 10_1101-2020_01_28_923532 206 28 . . . 10_1101-2020_01_28_923532 207 1 ( ( -LRB- 10_1101-2020_01_28_923532 207 2 3 3 LS 10_1101-2020_01_28_923532 207 3 ) ) -RRB- 10_1101-2020_01_28_923532 207 4 Unlike unlike IN 10_1101-2020_01_28_923532 207 5 the the DT 10_1101-2020_01_28_923532 207 6 CTS CTS NNP 10_1101-2020_01_28_923532 207 7 size size NN 10_1101-2020_01_28_923532 207 8 , , , 10_1101-2020_01_28_923532 207 9 the the DT 10_1101-2020_01_28_923532 207 10 ITS ITS NNP 10_1101-2020_01_28_923532 207 11 size size NN 10_1101-2020_01_28_923532 207 12 must must MD 10_1101-2020_01_28_923532 207 13 stay stay VB 10_1101-2020_01_28_923532 207 14 the the DT 10_1101-2020_01_28_923532 207 15 same same JJ 10_1101-2020_01_28_923532 207 16 or or CC 10_1101-2020_01_28_923532 207 17 increase increase VB 10_1101-2020_01_28_923532 207 18 when when WRB 10_1101-2020_01_28_923532 207 19 the the DT 10_1101-2020_01_28_923532 207 20 pool pool NN 10_1101-2020_01_28_923532 207 21 of of IN 10_1101-2020_01_28_923532 207 22 genes gene NNS 10_1101-2020_01_28_923532 207 23 is be VBZ 10_1101-2020_01_28_923532 207 24 reduced reduce VBN 10_1101-2020_01_28_923532 207 25 , , , 10_1101-2020_01_28_923532 207 26 because because IN 10_1101-2020_01_28_923532 207 27 we -PRON- PRP 10_1101-2020_01_28_923532 207 28 find find VBP 10_1101-2020_01_28_923532 207 29 the the DT 10_1101-2020_01_28_923532 207 30 optimal optimal JJ 10_1101-2020_01_28_923532 207 31 ITS its PRP$ 10_1101-2020_01_28_923532 207 32 size size NN 10_1101-2020_01_28_923532 207 33 for for IN 10_1101-2020_01_28_923532 207 34 each each DT 10_1101-2020_01_28_923532 207 35 patient patient NN 10_1101-2020_01_28_923532 207 36 . . . 10_1101-2020_01_28_923532 208 1 Overall overall RB 10_1101-2020_01_28_923532 208 2 , , , 10_1101-2020_01_28_923532 208 3 the the DT 10_1101-2020_01_28_923532 208 4 average average JJ 10_1101-2020_01_28_923532 208 5 ITS its PRP$ 10_1101-2020_01_28_923532 208 6 sizes size NNS 10_1101-2020_01_28_923532 208 7 across across IN 10_1101-2020_01_28_923532 208 8 each each DT 10_1101-2020_01_28_923532 208 9 cohort cohort NN 10_1101-2020_01_28_923532 208 10 using use VBG 10_1101-2020_01_28_923532 208 11 the the DT 10_1101-2020_01_28_923532 208 12 pool pool NN 10_1101-2020_01_28_923532 208 13 of of IN 10_1101-2020_01_28_923532 208 14 58 58 CD 10_1101-2020_01_28_923532 208 15 genes gene NNS 10_1101-2020_01_28_923532 208 16 for for IN 10_1101-2020_01_28_923532 208 17 baseline baseline NN 10_1101-2020_01_28_923532 208 18 settings setting NNS 10_1101-2020_01_28_923532 208 19 range range VBP 10_1101-2020_01_28_923532 208 20 from from IN 10_1101-2020_01_28_923532 208 21 1.16 1.16 CD 10_1101-2020_01_28_923532 208 22 to to IN 10_1101-2020_01_28_923532 208 23 4.0 4.0 CD 10_1101-2020_01_28_923532 208 24 . . . 10_1101-2020_01_28_923532 209 1 Among among IN 10_1101-2020_01_28_923532 209 2 cases case NNS 10_1101-2020_01_28_923532 209 3 that that WDT 10_1101-2020_01_28_923532 209 4 have have VBP 10_1101-2020_01_28_923532 209 5 any any DT 10_1101-2020_01_28_923532 209 6 solution solution NN 10_1101-2020_01_28_923532 209 7 , , , 10_1101-2020_01_28_923532 209 8 the the DT 10_1101-2020_01_28_923532 209 9 average average JJ 10_1101-2020_01_28_923532 209 10 increases increase NNS 10_1101-2020_01_28_923532 209 11 in in IN 10_1101-2020_01_28_923532 209 12 the the DT 10_1101-2020_01_28_923532 209 13 ITS its PRP$ 10_1101-2020_01_28_923532 209 14 sizes size NNS 10_1101-2020_01_28_923532 209 15 at at IN 10_1101-2020_01_28_923532 209 16 baseline baseline JJ 10_1101-2020_01_28_923532 209 17 settings setting NNS 10_1101-2020_01_28_923532 209 18 in in IN 10_1101-2020_01_28_923532 209 19 the the DT 10_1101-2020_01_28_923532 209 20 58 58 CD 10_1101-2020_01_28_923532 209 21 genes gene NNS 10_1101-2020_01_28_923532 209 22 case case NN 10_1101-2020_01_28_923532 209 23 vs. vs. IN 10_1101-2020_01_28_923532 209 24 that that DT 10_1101-2020_01_28_923532 209 25 of of IN 10_1101-2020_01_28_923532 209 26 the the DT 10_1101-2020_01_28_923532 209 27 1269 1269 CD 10_1101-2020_01_28_923532 209 28 case case NN 10_1101-2020_01_28_923532 209 29 were be VBD 10_1101-2020_01_28_923532 209 30 moderate moderate JJ 10_1101-2020_01_28_923532 209 31 , , , 10_1101-2020_01_28_923532 209 32 ranging range VBG 10_1101-2020_01_28_923532 209 33 from from IN 10_1101-2020_01_28_923532 209 34 0.16 0.16 CD 10_1101-2020_01_28_923532 209 35 to to IN 10_1101-2020_01_28_923532 209 36 1.33 1.33 CD 10_1101-2020_01_28_923532 209 37 . . . 10_1101-2020_01_28_923532 210 1 Optimal Optimal NNP 10_1101-2020_01_28_923532 210 2 Fairness Fairness NNP 10_1101-2020_01_28_923532 210 3 - - HYPH 10_1101-2020_01_28_923532 210 4 Based base VBN 10_1101-2020_01_28_923532 210 5 Combination Combination NNP 10_1101-2020_01_28_923532 210 6 Therapies Therapies NNPS 10_1101-2020_01_28_923532 210 7 for for IN 10_1101-2020_01_28_923532 210 8 a a DT 10_1101-2020_01_28_923532 210 9 Given give VBN 10_1101-2020_01_28_923532 210 10 Cohort Cohort NNP 10_1101-2020_01_28_923532 210 11 of of IN 10_1101-2020_01_28_923532 210 12 Patients Patients NNPS 10_1101-2020_01_28_923532 210 13 Until until IN 10_1101-2020_01_28_923532 210 14 now now RB 10_1101-2020_01_28_923532 210 15 we -PRON- PRP 10_1101-2020_01_28_923532 210 16 have have VBP 10_1101-2020_01_28_923532 210 17 adhered adhere VBN 10_1101-2020_01_28_923532 210 18 to to IN 10_1101-2020_01_28_923532 210 19 a a DT 10_1101-2020_01_28_923532 210 20 patient patient NN 10_1101-2020_01_28_923532 210 21 - - HYPH 10_1101-2020_01_28_923532 210 22 centered center VBN 10_1101-2020_01_28_923532 210 23 approach approach NN 10_1101-2020_01_28_923532 210 24 that that WDT 10_1101-2020_01_28_923532 210 25 aims aim VBZ 10_1101-2020_01_28_923532 210 26 to to TO 10_1101-2020_01_28_923532 210 27 find find VB 10_1101-2020_01_28_923532 210 28 the the DT 10_1101-2020_01_28_923532 210 29 minimum minimum NN 10_1101-2020_01_28_923532 210 30 - - HYPH 10_1101-2020_01_28_923532 210 31 size size NN 10_1101-2020_01_28_923532 210 32 ITS ITS NNP 10_1101-2020_01_28_923532 210 33 for for IN 10_1101-2020_01_28_923532 210 34 each each DT 10_1101-2020_01_28_923532 210 35 patient patient JJ 10_1101-2020_01_28_923532 210 36 , , , 10_1101-2020_01_28_923532 210 37 first first JJ 10_1101-2020_01_28_923532 210 38 and and CC 10_1101-2020_01_28_923532 210 39 foremost foremost RB 10_1101-2020_01_28_923532 210 40 . . . 10_1101-2020_01_28_923532 211 1 We -PRON- PRP 10_1101-2020_01_28_923532 211 2 now now RB 10_1101-2020_01_28_923532 211 3 study study VBP 10_1101-2020_01_28_923532 211 4 a a DT 10_1101-2020_01_28_923532 211 5 different different JJ 10_1101-2020_01_28_923532 211 6 , , , 10_1101-2020_01_28_923532 211 7 cohort cohort NN 10_1101-2020_01_28_923532 211 8 - - HYPH 10_1101-2020_01_28_923532 211 9 centered center VBN 10_1101-2020_01_28_923532 211 10 approach approach NN 10_1101-2020_01_28_923532 211 11 , , , 10_1101-2020_01_28_923532 211 12 where where WRB 10_1101-2020_01_28_923532 211 13 given give VBN 10_1101-2020_01_28_923532 211 14 a a DT 10_1101-2020_01_28_923532 211 15 cohort cohort NN 10_1101-2020_01_28_923532 211 16 of of IN 10_1101-2020_01_28_923532 211 17 patients patient NNS 10_1101-2020_01_28_923532 211 18 , , , 10_1101-2020_01_28_923532 211 19 we -PRON- PRP 10_1101-2020_01_28_923532 211 20 seek seek VBP 10_1101-2020_01_28_923532 211 21 to to TO 10_1101-2020_01_28_923532 211 22 minimize minimize VB 10_1101-2020_01_28_923532 211 23 the the DT 10_1101-2020_01_28_923532 211 24 total total JJ 10_1101-2020_01_28_923532 211 25 size size NN 10_1101-2020_01_28_923532 211 26 of of IN 10_1101-2020_01_28_923532 211 27 the the DT 10_1101-2020_01_28_923532 211 28 overall overall JJ 10_1101-2020_01_28_923532 211 29 CTS CTS NNP 10_1101-2020_01_28_923532 211 30 size size NN 10_1101-2020_01_28_923532 211 31 , , , 10_1101-2020_01_28_923532 211 32 while while IN 10_1101-2020_01_28_923532 211 33 allowing allow VBG 10_1101-2020_01_28_923532 211 34 for for IN 10_1101-2020_01_28_923532 211 35 some some DT 10_1101-2020_01_28_923532 211 36 increase increase NN 10_1101-2020_01_28_923532 211 37 in in IN 10_1101-2020_01_28_923532 211 38 the the DT 10_1101-2020_01_28_923532 211 39 ITS its PRP$ 10_1101-2020_01_28_923532 211 40 sizes size NNS 10_1101-2020_01_28_923532 211 41 . . . 10_1101-2020_01_28_923532 212 1 The the DT 10_1101-2020_01_28_923532 212 2 key key JJ 10_1101-2020_01_28_923532 212 3 question question NN 10_1101-2020_01_28_923532 212 4 is be VBZ 10_1101-2020_01_28_923532 212 5 how how WRB 10_1101-2020_01_28_923532 212 6 much much RB 10_1101-2020_01_28_923532 212 7 larger large JJR 10_1101-2020_01_28_923532 212 8 are be VBP 10_1101-2020_01_28_923532 212 9 the the DT 10_1101-2020_01_28_923532 212 10 resulting result VBG 10_1101-2020_01_28_923532 212 11 ITS its PRP$ 10_1101-2020_01_28_923532 212 12 sizes size NNS 10_1101-2020_01_28_923532 212 13 if if IN 10_1101-2020_01_28_923532 212 14 we -PRON- PRP 10_1101-2020_01_28_923532 212 15 optimize optimize VBP 10_1101-2020_01_28_923532 212 16 for for IN 10_1101-2020_01_28_923532 212 17 minimizing minimize VBG 10_1101-2020_01_28_923532 212 18 the the DT 10_1101-2020_01_28_923532 212 19 cohort cohort NN 10_1101-2020_01_28_923532 212 20 ( ( -LRB- 10_1101-2020_01_28_923532 212 21 CTS CTS NNP 10_1101-2020_01_28_923532 212 22 size size NN 10_1101-2020_01_28_923532 212 23 ) ) -RRB- 10_1101-2020_01_28_923532 212 24 , , , 10_1101-2020_01_28_923532 212 25 rather rather RB 10_1101-2020_01_28_923532 212 26 than than IN 10_1101-2020_01_28_923532 212 27 the the DT 10_1101-2020_01_28_923532 212 28 individuals individual NNS 10_1101-2020_01_28_923532 212 29 ( ( -LRB- 10_1101-2020_01_28_923532 212 30 ITS its PRP$ 10_1101-2020_01_28_923532 212 31 size size NN 10_1101-2020_01_28_923532 212 32 ) ) -RRB- 10_1101-2020_01_28_923532 212 33 ? ? . 10_1101-2020_01_28_923532 213 1 This this DT 10_1101-2020_01_28_923532 213 2 challenge challenge NN 10_1101-2020_01_28_923532 213 3 is be VBZ 10_1101-2020_01_28_923532 213 4 motivated motivate VBN 10_1101-2020_01_28_923532 213 5 by by IN 10_1101-2020_01_28_923532 213 6 a a DT 10_1101-2020_01_28_923532 213 7 ‘ ' `` 10_1101-2020_01_28_923532 213 8 fairness fairness NN 10_1101-2020_01_28_923532 213 9 ’ ' '' 10_1101-2020_01_28_923532 213 10 perspective perspective NN 10_1101-2020_01_28_923532 213 11 ( ( -LRB- 10_1101-2020_01_28_923532 213 12 Supplementary Supplementary NNP 10_1101-2020_01_28_923532 213 13 Materials material NNS 10_1101-2020_01_28_923532 213 14 1 1 CD 10_1101-2020_01_28_923532 213 15 ) ) -RRB- 10_1101-2020_01_28_923532 213 16 , , , 10_1101-2020_01_28_923532 213 17 where where WRB 10_1101-2020_01_28_923532 213 18 we -PRON- PRP 10_1101-2020_01_28_923532 213 19 seek seek VBP 10_1101-2020_01_28_923532 213 20 solutions solution NNS 10_1101-2020_01_28_923532 213 21 that that WDT 10_1101-2020_01_28_923532 213 22 are be VBP 10_1101-2020_01_28_923532 213 23 beneficial beneficial JJ 10_1101-2020_01_28_923532 213 24 for for IN 10_1101-2020_01_28_923532 213 25 the the DT 10_1101-2020_01_28_923532 213 26 entire entire JJ 10_1101-2020_01_28_923532 213 27 community community NN 10_1101-2020_01_28_923532 213 28 from from IN 10_1101-2020_01_28_923532 213 29 a a DT 10_1101-2020_01_28_923532 213 30 social social JJ 10_1101-2020_01_28_923532 213 31 or or CC 10_1101-2020_01_28_923532 213 32 economic economic JJ 10_1101-2020_01_28_923532 213 33 perspective perspective NN 10_1101-2020_01_28_923532 213 34 ( ( -LRB- 10_1101-2020_01_28_923532 213 35 in in IN 10_1101-2020_01_28_923532 213 36 terms term NNS 10_1101-2020_01_28_923532 213 37 of of IN 10_1101-2020_01_28_923532 213 38 CTS CTS NNP 10_1101-2020_01_28_923532 213 39 size size NN 10_1101-2020_01_28_923532 213 40 ) ) -RRB- 10_1101-2020_01_28_923532 213 41 even even RB 10_1101-2020_01_28_923532 213 42 if if IN 10_1101-2020_01_28_923532 213 43 they -PRON- PRP 10_1101-2020_01_28_923532 213 44 are be VBP 10_1101-2020_01_28_923532 213 45 potentially potentially RB 10_1101-2020_01_28_923532 213 46 sub sub JJ 10_1101-2020_01_28_923532 213 47 - - JJ 10_1101-2020_01_28_923532 213 48 optimal optimal JJ 10_1101-2020_01_28_923532 213 49 at at IN 10_1101-2020_01_28_923532 213 50 the the DT 10_1101-2020_01_28_923532 213 51 individual individual JJ 10_1101-2020_01_28_923532 213 52 level level NN 10_1101-2020_01_28_923532 213 53 ( ( -LRB- 10_1101-2020_01_28_923532 213 54 in in IN 10_1101-2020_01_28_923532 213 55 terms term NNS 10_1101-2020_01_28_923532 213 56 of of IN 10_1101-2020_01_28_923532 213 57 ITS its PRP$ 10_1101-2020_01_28_923532 213 58 sizes size NNS 10_1101-2020_01_28_923532 213 59 ) ) -RRB- 10_1101-2020_01_28_923532 213 60 . . . 10_1101-2020_01_28_923532 214 1 Here here RB 10_1101-2020_01_28_923532 214 2 , , , 10_1101-2020_01_28_923532 214 3 the the DT 10_1101-2020_01_28_923532 214 4 potential potential JJ 10_1101-2020_01_28_923532 214 5 benefit benefit NN 10_1101-2020_01_28_923532 214 6 is be VBZ 10_1101-2020_01_28_923532 214 7 economic economic JJ 10_1101-2020_01_28_923532 214 8 since since IN 10_1101-2020_01_28_923532 214 9 running run VBG 10_1101-2020_01_28_923532 214 10 a a DT 10_1101-2020_01_28_923532 214 11 105 105 CD 10_1101-2020_01_28_923532 214 12 and and CC 10_1101-2020_01_28_923532 214 13 is be VBZ 10_1101-2020_01_28_923532 214 14 also also RB 10_1101-2020_01_28_923532 214 15 made make VBN 10_1101-2020_01_28_923532 214 16 available available JJ 10_1101-2020_01_28_923532 214 17 for for IN 10_1101-2020_01_28_923532 214 18 use use NN 10_1101-2020_01_28_923532 214 19 under under IN 10_1101-2020_01_28_923532 214 20 a a DT 10_1101-2020_01_28_923532 214 21 CC0 CC0 NNP 10_1101-2020_01_28_923532 214 22 license license NN 10_1101-2020_01_28_923532 214 23 . . . 10_1101-2020_01_28_923532 215 1 ( ( -LRB- 10_1101-2020_01_28_923532 215 2 which which WDT 10_1101-2020_01_28_923532 215 3 was be VBD 10_1101-2020_01_28_923532 215 4 not not RB 10_1101-2020_01_28_923532 215 5 certified certify VBN 10_1101-2020_01_28_923532 215 6 by by IN 10_1101-2020_01_28_923532 215 7 peer peer NN 10_1101-2020_01_28_923532 215 8 review review NN 10_1101-2020_01_28_923532 215 9 ) ) -RRB- 10_1101-2020_01_28_923532 215 10 is be VBZ 10_1101-2020_01_28_923532 215 11 the the DT 10_1101-2020_01_28_923532 215 12 author author NN 10_1101-2020_01_28_923532 215 13 / / SYM 10_1101-2020_01_28_923532 215 14 funder funder NN 10_1101-2020_01_28_923532 215 15 . . . 10_1101-2020_01_28_923532 216 1 This this DT 10_1101-2020_01_28_923532 216 2 article article NN 10_1101-2020_01_28_923532 216 3 is be VBZ 10_1101-2020_01_28_923532 216 4 a a DT 10_1101-2020_01_28_923532 216 5 US US NNP 10_1101-2020_01_28_923532 216 6 Government Government NNP 10_1101-2020_01_28_923532 216 7 work work NN 10_1101-2020_01_28_923532 216 8 . . . 10_1101-2020_01_28_923532 217 1 It -PRON- PRP 10_1101-2020_01_28_923532 217 2 is be VBZ 10_1101-2020_01_28_923532 217 3 not not RB 10_1101-2020_01_28_923532 217 4 subject subject JJ 10_1101-2020_01_28_923532 217 5 to to IN 10_1101-2020_01_28_923532 217 6 copyright copyright NN 10_1101-2020_01_28_923532 217 7 under under IN 10_1101-2020_01_28_923532 217 8 17 17 CD 10_1101-2020_01_28_923532 217 9 USC usc NN 10_1101-2020_01_28_923532 217 10 The the DT 10_1101-2020_01_28_923532 217 11 copyright copyright NN 10_1101-2020_01_28_923532 217 12 holder holder NN 10_1101-2020_01_28_923532 217 13 for for IN 10_1101-2020_01_28_923532 217 14 this this DT 10_1101-2020_01_28_923532 217 15 preprintthis preprintthis NN 10_1101-2020_01_28_923532 217 16 version version NN 10_1101-2020_01_28_923532 217 17 posted post VBD 10_1101-2020_01_28_923532 217 18 February February NNP 10_1101-2020_01_28_923532 217 19 12 12 CD 10_1101-2020_01_28_923532 217 20 , , , 10_1101-2020_01_28_923532 217 21 2021 2021 CD 10_1101-2020_01_28_923532 217 22 . . . 10_1101-2020_01_28_923532 217 23 ; ; : 10_1101-2020_01_28_923532 217 24 https://doi.org/10.1101/2020.01.28.923532doi https://doi.org/10.1101/2020.01.28.923532doi ADD 10_1101-2020_01_28_923532 217 25 : : : 10_1101-2020_01_28_923532 217 26 bioRxiv biorxiv VB 10_1101-2020_01_28_923532 217 27 preprint preprint NN 10_1101-2020_01_28_923532 217 28 https://doi.org/10.1101/2020.01.28.923532 https://doi.org/10.1101/2020.01.28.923532 UH 10_1101-2020_01_28_923532 217 29 18 18 CD 10_1101-2020_01_28_923532 217 30 basket basket NN 10_1101-2020_01_28_923532 217 31 trial trial NN 10_1101-2020_01_28_923532 217 32 would would MD 10_1101-2020_01_28_923532 217 33 be be VB 10_1101-2020_01_28_923532 217 34 less less RBR 10_1101-2020_01_28_923532 217 35 expensive expensive JJ 10_1101-2020_01_28_923532 217 36 if if IN 10_1101-2020_01_28_923532 217 37 one one PRP 10_1101-2020_01_28_923532 217 38 reduces reduce VBZ 10_1101-2020_01_28_923532 217 39 the the DT 10_1101-2020_01_28_923532 217 40 size size NN 10_1101-2020_01_28_923532 217 41 of of IN 10_1101-2020_01_28_923532 217 42 the the DT 10_1101-2020_01_28_923532 217 43 basket basket NN 10_1101-2020_01_28_923532 217 44 of of IN 10_1101-2020_01_28_923532 217 45 available available JJ 10_1101-2020_01_28_923532 217 46 treatments treatment NNS 10_1101-2020_01_28_923532 217 47 ( ( -LRB- 10_1101-2020_01_28_923532 217 48 Figure figure VB 10_1101-2020_01_28_923532 217 49 6A 6a NN 10_1101-2020_01_28_923532 217 50 - - HYPH 10_1101-2020_01_28_923532 217 51 B b NN 10_1101-2020_01_28_923532 217 52 ) ) -RRB- 10_1101-2020_01_28_923532 217 53 . . . 10_1101-2020_01_28_923532 218 1 We -PRON- PRP 10_1101-2020_01_28_923532 218 2 formalized formalize VBD 10_1101-2020_01_28_923532 218 3 this this DT 10_1101-2020_01_28_923532 218 4 ‘ ' `` 10_1101-2020_01_28_923532 218 5 fair fair JJ 10_1101-2020_01_28_923532 218 6 CTS CTS NNP 10_1101-2020_01_28_923532 218 7 problem problem NN 10_1101-2020_01_28_923532 218 8 ’ ' '' 10_1101-2020_01_28_923532 218 9 by by IN 10_1101-2020_01_28_923532 218 10 adding add VBG 10_1101-2020_01_28_923532 218 11 a a DT 10_1101-2020_01_28_923532 218 12 cost cost NN 10_1101-2020_01_28_923532 218 13 parameter parameter NN 10_1101-2020_01_28_923532 218 14 𝛼 𝛼 LS 10_1101-2020_01_28_923532 218 15 that that WDT 10_1101-2020_01_28_923532 218 16 specifies specify VBZ 10_1101-2020_01_28_923532 218 17 the the DT 10_1101-2020_01_28_923532 218 18 limit limit NN 10_1101-2020_01_28_923532 218 19 on on IN 10_1101-2020_01_28_923532 218 20 the the DT 10_1101-2020_01_28_923532 218 21 excess excess JJ 10_1101-2020_01_28_923532 218 22 number number NN 10_1101-2020_01_28_923532 218 23 of of IN 10_1101-2020_01_28_923532 218 24 ( ( -LRB- 10_1101-2020_01_28_923532 218 25 ITS its PRP$ 10_1101-2020_01_28_923532 218 26 ) ) -RRB- 10_1101-2020_01_28_923532 218 27 targets target NNS 10_1101-2020_01_28_923532 218 28 selected select VBN 10_1101-2020_01_28_923532 218 29 for for IN 10_1101-2020_01_28_923532 218 30 any any DT 10_1101-2020_01_28_923532 218 31 individual individual JJ 10_1101-2020_01_28_923532 218 32 patient patient NN 10_1101-2020_01_28_923532 218 33 , , , 10_1101-2020_01_28_923532 218 34 compared compare VBN 10_1101-2020_01_28_923532 218 35 to to IN 10_1101-2020_01_28_923532 218 36 the the DT 10_1101-2020_01_28_923532 218 37 number number NN 10_1101-2020_01_28_923532 218 38 selected select VBN 10_1101-2020_01_28_923532 218 39 in in IN 10_1101-2020_01_28_923532 218 40 the the DT 10_1101-2020_01_28_923532 218 41 individual individual NN 10_1101-2020_01_28_923532 218 42 - - HYPH 10_1101-2020_01_28_923532 218 43 based base VBN 10_1101-2020_01_28_923532 218 44 approach approach NN 10_1101-2020_01_28_923532 218 45 that that WDT 10_1101-2020_01_28_923532 218 46 was be VBD 10_1101-2020_01_28_923532 218 47 studied study VBN 10_1101-2020_01_28_923532 218 48 up up RP 10_1101-2020_01_28_923532 218 49 until until IN 10_1101-2020_01_28_923532 218 50 now now RB 10_1101-2020_01_28_923532 218 51 ( ( -LRB- 10_1101-2020_01_28_923532 218 52 formally formally RB 10_1101-2020_01_28_923532 218 53 , , , 10_1101-2020_01_28_923532 218 54 the the DT 10_1101-2020_01_28_923532 218 55 latter latter JJ 10_1101-2020_01_28_923532 218 56 corresponds correspond NNS 10_1101-2020_01_28_923532 218 57 to to IN 10_1101-2020_01_28_923532 218 58 setting set VBG 10_1101-2020_01_28_923532 218 59 𝛼 𝛼 XX 10_1101-2020_01_28_923532 218 60 = = SYM 10_1101-2020_01_28_923532 218 61 0 0 CD 10_1101-2020_01_28_923532 218 62 ) ) -RRB- 10_1101-2020_01_28_923532 218 63 . . . 10_1101-2020_01_28_923532 219 1 We -PRON- PRP 10_1101-2020_01_28_923532 219 2 formulated formulate VBD 10_1101-2020_01_28_923532 219 3 and and CC 10_1101-2020_01_28_923532 219 4 solved solve VBD 10_1101-2020_01_28_923532 219 5 via via IN 10_1101-2020_01_28_923532 219 6 ILP ILP NNP 10_1101-2020_01_28_923532 219 7 this this DT 10_1101-2020_01_28_923532 219 8 fair fair JJ 10_1101-2020_01_28_923532 219 9 CTS CTS NNP 10_1101-2020_01_28_923532 219 10 problem problem NN 10_1101-2020_01_28_923532 219 11 for for IN 10_1101-2020_01_28_923532 219 12 up up IN 10_1101-2020_01_28_923532 219 13 to to TO 10_1101-2020_01_28_923532 219 14 1269 1269 CD 10_1101-2020_01_28_923532 219 15 possible possible JJ 10_1101-2020_01_28_923532 219 16 targets target NNS 10_1101-2020_01_28_923532 219 17 on on IN 10_1101-2020_01_28_923532 219 18 all all DT 10_1101-2020_01_28_923532 219 19 nine nine CD 10_1101-2020_01_28_923532 219 20 data data NN 10_1101-2020_01_28_923532 219 21 sets set NNS 10_1101-2020_01_28_923532 219 22 ( ( -LRB- 10_1101-2020_01_28_923532 219 23 Methods Methods NNP 10_1101-2020_01_28_923532 219 24 ) ) -RRB- 10_1101-2020_01_28_923532 219 25 . . . 10_1101-2020_01_28_923532 220 1 We -PRON- PRP 10_1101-2020_01_28_923532 220 2 fixed fix VBD 10_1101-2020_01_28_923532 220 3 𝑟 𝑟 NN 10_1101-2020_01_28_923532 220 4 = = SYM 10_1101-2020_01_28_923532 220 5 2 2 CD 10_1101-2020_01_28_923532 220 6 and and CC 10_1101-2020_01_28_923532 220 7 𝑢𝑏 𝑢𝑏 NNP 10_1101-2020_01_28_923532 220 8 = = SYM 10_1101-2020_01_28_923532 220 9 0.1 0.1 CD 10_1101-2020_01_28_923532 220 10 while while IN 10_1101-2020_01_28_923532 220 11 varying vary VBG 10_1101-2020_01_28_923532 220 12 𝛼 𝛼 NN 10_1101-2020_01_28_923532 220 13 and and CC 10_1101-2020_01_28_923532 220 14 𝑙𝑏. 𝑙𝑏. NNP 10_1101-2020_01_28_923532 221 1 Figure figure NN 10_1101-2020_01_28_923532 221 2 6C 6c NN 10_1101-2020_01_28_923532 221 3 and and CC 10_1101-2020_01_28_923532 221 4 Figures figure NNS 10_1101-2020_01_28_923532 221 5 S19-S23 S19-S23 NNP 10_1101-2020_01_28_923532 221 6 in in IN 10_1101-2020_01_28_923532 221 7 Supplementary Supplementary NNP 10_1101-2020_01_28_923532 221 8 Materials Materials NNP 10_1101-2020_01_28_923532 221 9 10 10 CD 10_1101-2020_01_28_923532 221 10 show show VBP 10_1101-2020_01_28_923532 221 11 the the DT 10_1101-2020_01_28_923532 221 12 optimal optimal JJ 10_1101-2020_01_28_923532 221 13 CTS CTS NNP 10_1101-2020_01_28_923532 221 14 and and CC 10_1101-2020_01_28_923532 221 15 ITS its PRP$ 10_1101-2020_01_28_923532 221 16 sizes size NNS 10_1101-2020_01_28_923532 221 17 for for IN 10_1101-2020_01_28_923532 221 18 𝛼 𝛼 NNS 10_1101-2020_01_28_923532 221 19 = = SYM 10_1101-2020_01_28_923532 221 20 0 0 CD 10_1101-2020_01_28_923532 221 21 , , , 10_1101-2020_01_28_923532 221 22 . . . 10_1101-2020_01_28_923532 222 1 . . . 10_1101-2020_01_28_923532 223 1 . . . 10_1101-2020_01_28_923532 224 1 , , , 10_1101-2020_01_28_923532 224 2 5 5 CD 10_1101-2020_01_28_923532 224 3 . . . 10_1101-2020_01_28_923532 225 1 105 105 CD 10_1101-2020_01_28_923532 225 2 and and CC 10_1101-2020_01_28_923532 225 3 is be VBZ 10_1101-2020_01_28_923532 225 4 also also RB 10_1101-2020_01_28_923532 225 5 made make VBN 10_1101-2020_01_28_923532 225 6 available available JJ 10_1101-2020_01_28_923532 225 7 for for IN 10_1101-2020_01_28_923532 225 8 use use NN 10_1101-2020_01_28_923532 225 9 under under IN 10_1101-2020_01_28_923532 225 10 a a DT 10_1101-2020_01_28_923532 225 11 CC0 CC0 NNP 10_1101-2020_01_28_923532 225 12 license license NN 10_1101-2020_01_28_923532 225 13 . . . 10_1101-2020_01_28_923532 226 1 ( ( -LRB- 10_1101-2020_01_28_923532 226 2 which which WDT 10_1101-2020_01_28_923532 226 3 was be VBD 10_1101-2020_01_28_923532 226 4 not not RB 10_1101-2020_01_28_923532 226 5 certified certify VBN 10_1101-2020_01_28_923532 226 6 by by IN 10_1101-2020_01_28_923532 226 7 peer peer NN 10_1101-2020_01_28_923532 226 8 review review NN 10_1101-2020_01_28_923532 226 9 ) ) -RRB- 10_1101-2020_01_28_923532 226 10 is be VBZ 10_1101-2020_01_28_923532 226 11 the the DT 10_1101-2020_01_28_923532 226 12 author author NN 10_1101-2020_01_28_923532 226 13 / / SYM 10_1101-2020_01_28_923532 226 14 funder funder NN 10_1101-2020_01_28_923532 226 15 . . . 10_1101-2020_01_28_923532 227 1 This this DT 10_1101-2020_01_28_923532 227 2 article article NN 10_1101-2020_01_28_923532 227 3 is be VBZ 10_1101-2020_01_28_923532 227 4 a a DT 10_1101-2020_01_28_923532 227 5 US US NNP 10_1101-2020_01_28_923532 227 6 Government Government NNP 10_1101-2020_01_28_923532 227 7 work work NN 10_1101-2020_01_28_923532 227 8 . . . 10_1101-2020_01_28_923532 228 1 It -PRON- PRP 10_1101-2020_01_28_923532 228 2 is be VBZ 10_1101-2020_01_28_923532 228 3 not not RB 10_1101-2020_01_28_923532 228 4 subject subject JJ 10_1101-2020_01_28_923532 228 5 to to IN 10_1101-2020_01_28_923532 228 6 copyright copyright NN 10_1101-2020_01_28_923532 228 7 under under IN 10_1101-2020_01_28_923532 228 8 17 17 CD 10_1101-2020_01_28_923532 228 9 USC usc NN 10_1101-2020_01_28_923532 228 10 The the DT 10_1101-2020_01_28_923532 228 11 copyright copyright NN 10_1101-2020_01_28_923532 228 12 holder holder NN 10_1101-2020_01_28_923532 228 13 for for IN 10_1101-2020_01_28_923532 228 14 this this DT 10_1101-2020_01_28_923532 228 15 preprintthis preprintthis NN 10_1101-2020_01_28_923532 228 16 version version NN 10_1101-2020_01_28_923532 228 17 posted post VBD 10_1101-2020_01_28_923532 228 18 February February NNP 10_1101-2020_01_28_923532 228 19 12 12 CD 10_1101-2020_01_28_923532 228 20 , , , 10_1101-2020_01_28_923532 228 21 2021 2021 CD 10_1101-2020_01_28_923532 228 22 . . . 10_1101-2020_01_28_923532 228 23 ; ; : 10_1101-2020_01_28_923532 228 24 https://doi.org/10.1101/2020.01.28.923532doi https://doi.org/10.1101/2020.01.28.923532doi ADD 10_1101-2020_01_28_923532 228 25 : : : 10_1101-2020_01_28_923532 228 26 bioRxiv biorxiv VB 10_1101-2020_01_28_923532 228 27 preprint preprint NN 10_1101-2020_01_28_923532 228 28 https://doi.org/10.1101/2020.01.28.923532 https://doi.org/10.1101/2020.01.28.923532 UH 10_1101-2020_01_28_923532 228 29 19 19 CD 10_1101-2020_01_28_923532 228 30 Figure figure NN 10_1101-2020_01_28_923532 228 31 6 6 CD 10_1101-2020_01_28_923532 228 32 . . . 10_1101-2020_01_28_923532 229 1 A a DT 10_1101-2020_01_28_923532 229 2 schematic schematic JJ 10_1101-2020_01_28_923532 229 3 example example NN 10_1101-2020_01_28_923532 229 4 demonstrating demonstrate VBG 10_1101-2020_01_28_923532 229 5 the the DT 10_1101-2020_01_28_923532 229 6 rationale rationale NN 10_1101-2020_01_28_923532 229 7 and and CC 10_1101-2020_01_28_923532 229 8 workings working NNS 10_1101-2020_01_28_923532 229 9 of of IN 10_1101-2020_01_28_923532 229 10 fairness fairness NN 10_1101-2020_01_28_923532 229 11 - - HYPH 10_1101-2020_01_28_923532 229 12 based base VBN 10_1101-2020_01_28_923532 229 13 solutions solution NNS 10_1101-2020_01_28_923532 229 14 . . . 10_1101-2020_01_28_923532 230 1 ( ( -LRB- 10_1101-2020_01_28_923532 230 2 A a DT 10_1101-2020_01_28_923532 230 3 , , , 10_1101-2020_01_28_923532 230 4 B b NN 10_1101-2020_01_28_923532 230 5 ) ) -RRB- 10_1101-2020_01_28_923532 230 6 Let let VB 10_1101-2020_01_28_923532 230 7 us -PRON- PRP 10_1101-2020_01_28_923532 230 8 assume assume VB 10_1101-2020_01_28_923532 230 9 that that IN 10_1101-2020_01_28_923532 230 10 each each DT 10_1101-2020_01_28_923532 230 11 of of IN 10_1101-2020_01_28_923532 230 12 three three CD 10_1101-2020_01_28_923532 230 13 patients patient NNS 10_1101-2020_01_28_923532 230 14 has have VBZ 10_1101-2020_01_28_923532 230 15 two two CD 10_1101-2020_01_28_923532 230 16 tumor tumor NN 10_1101-2020_01_28_923532 230 17 cells cell NNS 10_1101-2020_01_28_923532 230 18 ( ( -LRB- 10_1101-2020_01_28_923532 230 19 columns column NNS 10_1101-2020_01_28_923532 230 20 ) ) -RRB- 10_1101-2020_01_28_923532 230 21 , , , 10_1101-2020_01_28_923532 230 22 each each DT 10_1101-2020_01_28_923532 230 23 displaying display VBG 10_1101-2020_01_28_923532 230 24 five five CD 10_1101-2020_01_28_923532 230 25 membrane membrane NN 10_1101-2020_01_28_923532 230 26 receptors receptor NNS 10_1101-2020_01_28_923532 230 27 that that WDT 10_1101-2020_01_28_923532 230 28 are be VBP 10_1101-2020_01_28_923532 230 29 highly highly RB 10_1101-2020_01_28_923532 230 30 expressed express VBN 10_1101-2020_01_28_923532 230 31 only only RB 10_1101-2020_01_28_923532 230 32 on on IN 10_1101-2020_01_28_923532 230 33 the the DT 10_1101-2020_01_28_923532 230 34 tumor tumor NN 10_1101-2020_01_28_923532 230 35 cells cell NNS 10_1101-2020_01_28_923532 230 36 and and CC 10_1101-2020_01_28_923532 230 37 not not RB 10_1101-2020_01_28_923532 230 38 on on IN 10_1101-2020_01_28_923532 230 39 the the DT 10_1101-2020_01_28_923532 230 40 non non JJ 10_1101-2020_01_28_923532 230 41 - - JJ 10_1101-2020_01_28_923532 230 42 tumor tumor JJ 10_1101-2020_01_28_923532 230 43 ones one NNS 10_1101-2020_01_28_923532 230 44 ( ( -LRB- 10_1101-2020_01_28_923532 230 45 rows row NNS 10_1101-2020_01_28_923532 230 46 ) ) -RRB- 10_1101-2020_01_28_923532 230 47 . . . 10_1101-2020_01_28_923532 231 1 If if IN 10_1101-2020_01_28_923532 231 2 we -PRON- PRP 10_1101-2020_01_28_923532 231 3 target target VBP 10_1101-2020_01_28_923532 231 4 { { -LRB- 10_1101-2020_01_28_923532 231 5 APP APP NNP 10_1101-2020_01_28_923532 231 6 , , , 10_1101-2020_01_28_923532 231 7 MET MET NNP 10_1101-2020_01_28_923532 231 8 } } -RRB- 10_1101-2020_01_28_923532 231 9 ( ( -LRB- 10_1101-2020_01_28_923532 231 10 panel panel NN 10_1101-2020_01_28_923532 231 11 A a NN 10_1101-2020_01_28_923532 231 12 , , , 10_1101-2020_01_28_923532 231 13 𝛼 𝛼 NN 10_1101-2020_01_28_923532 231 14 = = SYM 10_1101-2020_01_28_923532 231 15 1 1 CD 10_1101-2020_01_28_923532 231 16 ) ) -RRB- 10_1101-2020_01_28_923532 231 17 in in IN 10_1101-2020_01_28_923532 231 18 all all DT 10_1101-2020_01_28_923532 231 19 patients patient NNS 10_1101-2020_01_28_923532 231 20 , , , 10_1101-2020_01_28_923532 231 21 then then RB 10_1101-2020_01_28_923532 231 22 this this DT 10_1101-2020_01_28_923532 231 23 achieves achieve VBZ 10_1101-2020_01_28_923532 231 24 a a DT 10_1101-2020_01_28_923532 231 25 CTS CTS NNP 10_1101-2020_01_28_923532 231 26 size size NN 10_1101-2020_01_28_923532 231 27 of of IN 10_1101-2020_01_28_923532 231 28 2 2 CD 10_1101-2020_01_28_923532 231 29 , , , 10_1101-2020_01_28_923532 231 30 which which WDT 10_1101-2020_01_28_923532 231 31 is be VBZ 10_1101-2020_01_28_923532 231 32 the the DT 10_1101-2020_01_28_923532 231 33 minimum minimum NN 10_1101-2020_01_28_923532 231 34 possible possible JJ 10_1101-2020_01_28_923532 231 35 . . . 10_1101-2020_01_28_923532 232 1 Employing employ VBG 10_1101-2020_01_28_923532 232 2 the the DT 10_1101-2020_01_28_923532 232 3 original original JJ 10_1101-2020_01_28_923532 232 4 individual- individual- NN 10_1101-2020_01_28_923532 232 5 based base VBN 10_1101-2020_01_28_923532 232 6 optimizing optimize VBG 10_1101-2020_01_28_923532 232 7 objective objective NN 10_1101-2020_01_28_923532 232 8 , , , 10_1101-2020_01_28_923532 232 9 each each DT 10_1101-2020_01_28_923532 232 10 patient patient NN 10_1101-2020_01_28_923532 232 11 could could MD 10_1101-2020_01_28_923532 232 12 instead instead RB 10_1101-2020_01_28_923532 232 13 be be VB 10_1101-2020_01_28_923532 232 14 treated treat VBN 10_1101-2020_01_28_923532 232 15 by by IN 10_1101-2020_01_28_923532 232 16 an an DT 10_1101-2020_01_28_923532 232 17 ITS ITS NNP 10_1101-2020_01_28_923532 232 18 of of IN 10_1101-2020_01_28_923532 232 19 size size NN 10_1101-2020_01_28_923532 232 20 1 1 CD 10_1101-2020_01_28_923532 232 21 by by IN 10_1101-2020_01_28_923532 232 22 targeting target VBG 10_1101-2020_01_28_923532 232 23 the the DT 10_1101-2020_01_28_923532 232 24 distinct distinct JJ 10_1101-2020_01_28_923532 232 25 receptors receptor NNS 10_1101-2020_01_28_923532 232 26 called call VBD 10_1101-2020_01_28_923532 232 27 Target Target NNP 10_1101-2020_01_28_923532 232 28 1 1 CD 10_1101-2020_01_28_923532 232 29 ( ( -LRB- 10_1101-2020_01_28_923532 232 30 specific specific JJ 10_1101-2020_01_28_923532 232 31 to to IN 10_1101-2020_01_28_923532 232 32 Patient Patient NNP 10_1101-2020_01_28_923532 232 33 1 1 CD 10_1101-2020_01_28_923532 232 34 ) ) -RRB- 10_1101-2020_01_28_923532 232 35 , , , 10_1101-2020_01_28_923532 232 36 Target Target NNP 10_1101-2020_01_28_923532 232 37 2 2 CD 10_1101-2020_01_28_923532 232 38 and and CC 10_1101-2020_01_28_923532 232 39 Target Target NNP 10_1101-2020_01_28_923532 232 40 3 3 CD 10_1101-2020_01_28_923532 232 41 , , , 10_1101-2020_01_28_923532 232 42 respectively respectively RB 10_1101-2020_01_28_923532 232 43 , , , 10_1101-2020_01_28_923532 232 44 but but CC 10_1101-2020_01_28_923532 232 45 this this DT 10_1101-2020_01_28_923532 232 46 would would MD 10_1101-2020_01_28_923532 232 47 result result VB 10_1101-2020_01_28_923532 232 48 in in IN 10_1101-2020_01_28_923532 232 49 an an DT 10_1101-2020_01_28_923532 232 50 optimal optimal JJ 10_1101-2020_01_28_923532 232 51 CTS CTS NNP 10_1101-2020_01_28_923532 232 52 of of IN 10_1101-2020_01_28_923532 232 53 size size NN 10_1101-2020_01_28_923532 232 54 3 3 CD 10_1101-2020_01_28_923532 232 55 ( ( -LRB- 10_1101-2020_01_28_923532 232 56 panel panel NN 10_1101-2020_01_28_923532 232 57 B b NN 10_1101-2020_01_28_923532 232 58 , , , 10_1101-2020_01_28_923532 232 59 𝛼 𝛼 LS 10_1101-2020_01_28_923532 232 60 = = SYM 10_1101-2020_01_28_923532 232 61 0 0 CD 10_1101-2020_01_28_923532 232 62 ) ) -RRB- 10_1101-2020_01_28_923532 232 63 . . . 10_1101-2020_01_28_923532 233 1 The the DT 10_1101-2020_01_28_923532 233 2 solution solution NN 10_1101-2020_01_28_923532 233 3 in in IN 10_1101-2020_01_28_923532 233 4 panel panel NN 10_1101-2020_01_28_923532 233 5 A a DT 10_1101-2020_01_28_923532 233 6 has have VBZ 10_1101-2020_01_28_923532 233 7 an an DT 10_1101-2020_01_28_923532 233 8 unfairness unfairness JJ 10_1101-2020_01_28_923532 233 9 value value NN 10_1101-2020_01_28_923532 233 10 𝛼 𝛼 NN 10_1101-2020_01_28_923532 233 11 = = SYM 10_1101-2020_01_28_923532 233 12 1 1 CD 10_1101-2020_01_28_923532 233 13 because because IN 10_1101-2020_01_28_923532 233 14 the the DT 10_1101-2020_01_28_923532 233 15 worst bad JJS 10_1101-2020_01_28_923532 233 16 difference difference NN 10_1101-2020_01_28_923532 233 17 among among IN 10_1101-2020_01_28_923532 233 18 all all DT 10_1101-2020_01_28_923532 233 19 patients patient NNS 10_1101-2020_01_28_923532 233 20 is be VBZ 10_1101-2020_01_28_923532 233 21 that that IN 10_1101-2020_01_28_923532 233 22 a a DT 10_1101-2020_01_28_923532 233 23 patient patient JJ 10_1101-2020_01_28_923532 233 24 105 105 CD 10_1101-2020_01_28_923532 233 25 and and CC 10_1101-2020_01_28_923532 233 26 is be VBZ 10_1101-2020_01_28_923532 233 27 also also RB 10_1101-2020_01_28_923532 233 28 made make VBN 10_1101-2020_01_28_923532 233 29 available available JJ 10_1101-2020_01_28_923532 233 30 for for IN 10_1101-2020_01_28_923532 233 31 use use NN 10_1101-2020_01_28_923532 233 32 under under IN 10_1101-2020_01_28_923532 233 33 a a DT 10_1101-2020_01_28_923532 233 34 CC0 CC0 NNP 10_1101-2020_01_28_923532 233 35 license license NN 10_1101-2020_01_28_923532 233 36 . . . 10_1101-2020_01_28_923532 234 1 ( ( -LRB- 10_1101-2020_01_28_923532 234 2 which which WDT 10_1101-2020_01_28_923532 234 3 was be VBD 10_1101-2020_01_28_923532 234 4 not not RB 10_1101-2020_01_28_923532 234 5 certified certify VBN 10_1101-2020_01_28_923532 234 6 by by IN 10_1101-2020_01_28_923532 234 7 peer peer NN 10_1101-2020_01_28_923532 234 8 review review NN 10_1101-2020_01_28_923532 234 9 ) ) -RRB- 10_1101-2020_01_28_923532 234 10 is be VBZ 10_1101-2020_01_28_923532 234 11 the the DT 10_1101-2020_01_28_923532 234 12 author author NN 10_1101-2020_01_28_923532 234 13 / / SYM 10_1101-2020_01_28_923532 234 14 funder funder NN 10_1101-2020_01_28_923532 234 15 . . . 10_1101-2020_01_28_923532 235 1 This this DT 10_1101-2020_01_28_923532 235 2 article article NN 10_1101-2020_01_28_923532 235 3 is be VBZ 10_1101-2020_01_28_923532 235 4 a a DT 10_1101-2020_01_28_923532 235 5 US US NNP 10_1101-2020_01_28_923532 235 6 Government Government NNP 10_1101-2020_01_28_923532 235 7 work work NN 10_1101-2020_01_28_923532 235 8 . . . 10_1101-2020_01_28_923532 236 1 It -PRON- PRP 10_1101-2020_01_28_923532 236 2 is be VBZ 10_1101-2020_01_28_923532 236 3 not not RB 10_1101-2020_01_28_923532 236 4 subject subject JJ 10_1101-2020_01_28_923532 236 5 to to IN 10_1101-2020_01_28_923532 236 6 copyright copyright NN 10_1101-2020_01_28_923532 236 7 under under IN 10_1101-2020_01_28_923532 236 8 17 17 CD 10_1101-2020_01_28_923532 236 9 USC usc NN 10_1101-2020_01_28_923532 236 10 The the DT 10_1101-2020_01_28_923532 236 11 copyright copyright NN 10_1101-2020_01_28_923532 236 12 holder holder NN 10_1101-2020_01_28_923532 236 13 for for IN 10_1101-2020_01_28_923532 236 14 this this DT 10_1101-2020_01_28_923532 236 15 preprintthis preprintthis NN 10_1101-2020_01_28_923532 236 16 version version NN 10_1101-2020_01_28_923532 236 17 posted post VBD 10_1101-2020_01_28_923532 236 18 February February NNP 10_1101-2020_01_28_923532 236 19 12 12 CD 10_1101-2020_01_28_923532 236 20 , , , 10_1101-2020_01_28_923532 236 21 2021 2021 CD 10_1101-2020_01_28_923532 236 22 . . . 10_1101-2020_01_28_923532 236 23 ; ; : 10_1101-2020_01_28_923532 236 24 https://doi.org/10.1101/2020.01.28.923532doi https://doi.org/10.1101/2020.01.28.923532doi ADD 10_1101-2020_01_28_923532 236 25 : : : 10_1101-2020_01_28_923532 236 26 bioRxiv biorxiv VB 10_1101-2020_01_28_923532 236 27 preprint preprint NN 10_1101-2020_01_28_923532 236 28 https://doi.org/10.1101/2020.01.28.923532 https://doi.org/10.1101/2020.01.28.923532 UH 10_1101-2020_01_28_923532 236 29 20 20 CD 10_1101-2020_01_28_923532 236 30 receives receive VBZ 10_1101-2020_01_28_923532 236 31 1 1 CD 10_1101-2020_01_28_923532 236 32 more more JJR 10_1101-2020_01_28_923532 236 33 treatment treatment NN 10_1101-2020_01_28_923532 236 34 than than IN 10_1101-2020_01_28_923532 236 35 necessary necessary JJ 10_1101-2020_01_28_923532 236 36 . . . 10_1101-2020_01_28_923532 237 1 ( ( -LRB- 10_1101-2020_01_28_923532 237 2 C c NN 10_1101-2020_01_28_923532 237 3 ) ) -RRB- 10_1101-2020_01_28_923532 237 4 Heatmaps Heatmaps NNP 10_1101-2020_01_28_923532 237 5 showing show VBG 10_1101-2020_01_28_923532 237 6 how how WRB 10_1101-2020_01_28_923532 237 7 the the DT 10_1101-2020_01_28_923532 237 8 CTS CTS NNP 10_1101-2020_01_28_923532 237 9 size size NN 10_1101-2020_01_28_923532 237 10 varies vary VBZ 10_1101-2020_01_28_923532 237 11 as as IN 10_1101-2020_01_28_923532 237 12 𝛼 𝛼 NN 10_1101-2020_01_28_923532 237 13 increases increase NNS 10_1101-2020_01_28_923532 237 14 ( ( -LRB- 10_1101-2020_01_28_923532 237 15 y y NNP 10_1101-2020_01_28_923532 237 16 - - HYPH 10_1101-2020_01_28_923532 237 17 axis axis NNP 10_1101-2020_01_28_923532 237 18 ) ) -RRB- 10_1101-2020_01_28_923532 237 19 , , , 10_1101-2020_01_28_923532 237 20 starting start VBG 10_1101-2020_01_28_923532 237 21 from from IN 10_1101-2020_01_28_923532 237 22 its -PRON- PRP$ 10_1101-2020_01_28_923532 237 23 baseline baseline NN 10_1101-2020_01_28_923532 237 24 value value NN 10_1101-2020_01_28_923532 237 25 of of IN 10_1101-2020_01_28_923532 237 26 0 0 CD 10_1101-2020_01_28_923532 237 27 where where WRB 10_1101-2020_01_28_923532 237 28 each each DT 10_1101-2020_01_28_923532 237 29 patient patient NN 10_1101-2020_01_28_923532 237 30 is be VBZ 10_1101-2020_01_28_923532 237 31 assigned assign VBN 10_1101-2020_01_28_923532 237 32 a a DT 10_1101-2020_01_28_923532 237 33 minimum minimum JJ 10_1101-2020_01_28_923532 237 34 - - HYPH 10_1101-2020_01_28_923532 237 35 sizes size NNS 10_1101-2020_01_28_923532 237 36 individual individual JJ 10_1101-2020_01_28_923532 237 37 treatment treatment NN 10_1101-2020_01_28_923532 237 38 set set VBN 10_1101-2020_01_28_923532 237 39 ( ( -LRB- 10_1101-2020_01_28_923532 237 40 top top JJ 10_1101-2020_01_28_923532 237 41 row row NN 10_1101-2020_01_28_923532 237 42 ) ) -RRB- 10_1101-2020_01_28_923532 237 43 . . . 10_1101-2020_01_28_923532 238 1 The the DT 10_1101-2020_01_28_923532 238 2 lower lower RBR 10_1101-2020_01_28_923532 238 3 bound bind VBN 10_1101-2020_01_28_923532 238 4 on on IN 10_1101-2020_01_28_923532 238 5 tumor tumor NN 10_1101-2020_01_28_923532 238 6 cells cell NNS 10_1101-2020_01_28_923532 238 7 killed kill VBN 10_1101-2020_01_28_923532 238 8 ( ( -LRB- 10_1101-2020_01_28_923532 238 9 x- x- UH 10_1101-2020_01_28_923532 238 10 axis axis NNP 10_1101-2020_01_28_923532 238 11 ) ) -RRB- 10_1101-2020_01_28_923532 238 12 is be VBZ 10_1101-2020_01_28_923532 238 13 also also RB 10_1101-2020_01_28_923532 238 14 varied varied JJ 10_1101-2020_01_28_923532 238 15 while while IN 10_1101-2020_01_28_923532 238 16 the the DT 10_1101-2020_01_28_923532 238 17 upper upper JJ 10_1101-2020_01_28_923532 238 18 bound bind VBN 10_1101-2020_01_28_923532 238 19 on on IN 10_1101-2020_01_28_923532 238 20 non non JJ 10_1101-2020_01_28_923532 238 21 - - JJ 10_1101-2020_01_28_923532 238 22 tumor tumor JJ 10_1101-2020_01_28_923532 238 23 cells cell NNS 10_1101-2020_01_28_923532 238 24 killed kill VBN 10_1101-2020_01_28_923532 238 25 is be VBZ 10_1101-2020_01_28_923532 238 26 kept keep VBN 10_1101-2020_01_28_923532 238 27 fixed fix VBN 10_1101-2020_01_28_923532 238 28 at at IN 10_1101-2020_01_28_923532 238 29 0.1 0.1 CD 10_1101-2020_01_28_923532 238 30 . . . 10_1101-2020_01_28_923532 239 1 We -PRON- PRP 10_1101-2020_01_28_923532 239 2 are be VBP 10_1101-2020_01_28_923532 239 3 particularly particularly RB 10_1101-2020_01_28_923532 239 4 interested interested JJ 10_1101-2020_01_28_923532 239 5 in in IN 10_1101-2020_01_28_923532 239 6 finding find VBG 10_1101-2020_01_28_923532 239 7 the the DT 10_1101-2020_01_28_923532 239 8 smallest small JJS 10_1101-2020_01_28_923532 239 9 value value NN 10_1101-2020_01_28_923532 239 10 on on IN 10_1101-2020_01_28_923532 239 11 the the DT 10_1101-2020_01_28_923532 239 12 y y NN 10_1101-2020_01_28_923532 239 13 - - : 10_1101-2020_01_28_923532 239 14 axis axis NNP 10_1101-2020_01_28_923532 239 15 at at IN 10_1101-2020_01_28_923532 239 16 which which WDT 10_1101-2020_01_28_923532 239 17 the the DT 10_1101-2020_01_28_923532 239 18 CTS CTS NNP 10_1101-2020_01_28_923532 239 19 size size NN 10_1101-2020_01_28_923532 239 20 reaches reach VBZ 10_1101-2020_01_28_923532 239 21 its -PRON- PRP$ 10_1101-2020_01_28_923532 239 22 minimum minimum JJ 10_1101-2020_01_28_923532 239 23 value value NN 10_1101-2020_01_28_923532 239 24 , , , 10_1101-2020_01_28_923532 239 25 which which WDT 10_1101-2020_01_28_923532 239 26 is be VBZ 10_1101-2020_01_28_923532 239 27 circled circle VBN 10_1101-2020_01_28_923532 239 28 for for IN 10_1101-2020_01_28_923532 239 29 the the DT 10_1101-2020_01_28_923532 239 30 baseline baseline NN 10_1101-2020_01_28_923532 239 31 𝑙𝑏 𝑙𝑏 NN 10_1101-2020_01_28_923532 239 32 = = SYM 10_1101-2020_01_28_923532 239 33 0.8 0.8 CD 10_1101-2020_01_28_923532 239 34 , , , 10_1101-2020_01_28_923532 239 35 because because IN 10_1101-2020_01_28_923532 239 36 this this DT 10_1101-2020_01_28_923532 239 37 bounds bound VBZ 10_1101-2020_01_28_923532 239 38 the the DT 10_1101-2020_01_28_923532 239 39 tradeoff tradeoff NN 10_1101-2020_01_28_923532 239 40 between between IN 10_1101-2020_01_28_923532 239 41 the the DT 10_1101-2020_01_28_923532 239 42 achievable achievable JJ 10_1101-2020_01_28_923532 239 43 reduction reduction NN 10_1101-2020_01_28_923532 239 44 in in IN 10_1101-2020_01_28_923532 239 45 the the DT 10_1101-2020_01_28_923532 239 46 number number NN 10_1101-2020_01_28_923532 239 47 of of IN 10_1101-2020_01_28_923532 239 48 targets target NNS 10_1101-2020_01_28_923532 239 49 needed need VBN 10_1101-2020_01_28_923532 239 50 to to TO 10_1101-2020_01_28_923532 239 51 treat treat VB 10_1101-2020_01_28_923532 239 52 the the DT 10_1101-2020_01_28_923532 239 53 whole whole JJ 10_1101-2020_01_28_923532 239 54 cohort cohort NN 10_1101-2020_01_28_923532 239 55 and and CC 10_1101-2020_01_28_923532 239 56 the the DT 10_1101-2020_01_28_923532 239 57 number number NN 10_1101-2020_01_28_923532 239 58 of of IN 10_1101-2020_01_28_923532 239 59 extra extra JJ 10_1101-2020_01_28_923532 239 60 targets target NNS 10_1101-2020_01_28_923532 239 61 above above IN 10_1101-2020_01_28_923532 239 62 the the DT 10_1101-2020_01_28_923532 239 63 ITS ITS NNP 10_1101-2020_01_28_923532 239 64 minimum minimum NN 10_1101-2020_01_28_923532 239 65 that that IN 10_1101-2020_01_28_923532 239 66 any any DT 10_1101-2020_01_28_923532 239 67 patient patient NN 10_1101-2020_01_28_923532 239 68 might may MD 10_1101-2020_01_28_923532 239 69 need need VB 10_1101-2020_01_28_923532 239 70 to to TO 10_1101-2020_01_28_923532 239 71 receive receive VB 10_1101-2020_01_28_923532 239 72 . . . 10_1101-2020_01_28_923532 240 1 For for IN 10_1101-2020_01_28_923532 240 2 8 8 CD 10_1101-2020_01_28_923532 240 3 out out IN 10_1101-2020_01_28_923532 240 4 of of IN 10_1101-2020_01_28_923532 240 5 9 9 CD 10_1101-2020_01_28_923532 240 6 data data NN 10_1101-2020_01_28_923532 240 7 sets set NNS 10_1101-2020_01_28_923532 240 8 , , , 10_1101-2020_01_28_923532 240 9 we -PRON- PRP 10_1101-2020_01_28_923532 240 10 encouragingly encouragingly RB 10_1101-2020_01_28_923532 240 11 find find VBP 10_1101-2020_01_28_923532 240 12 that that IN 10_1101-2020_01_28_923532 240 13 the the DT 10_1101-2020_01_28_923532 240 14 unfairness unfairness JJ 10_1101-2020_01_28_923532 240 15 cost cost NN 10_1101-2020_01_28_923532 240 16 parameter parameter NN 10_1101-2020_01_28_923532 240 17 𝛼 𝛼 -RRB- 10_1101-2020_01_28_923532 240 18 is be VBZ 10_1101-2020_01_28_923532 240 19 bounded bound VBN 10_1101-2020_01_28_923532 240 20 by by IN 10_1101-2020_01_28_923532 240 21 a a DT 10_1101-2020_01_28_923532 240 22 constant constant NN 10_1101-2020_01_28_923532 240 23 of of IN 10_1101-2020_01_28_923532 240 24 3 3 CD 10_1101-2020_01_28_923532 240 25 ; ; : 10_1101-2020_01_28_923532 240 26 i.e. i.e. FW 10_1101-2020_01_28_923532 240 27 , , , 10_1101-2020_01_28_923532 240 28 it -PRON- PRP 10_1101-2020_01_28_923532 240 29 is be VBZ 10_1101-2020_01_28_923532 240 30 sufficient sufficient JJ 10_1101-2020_01_28_923532 240 31 to to TO 10_1101-2020_01_28_923532 240 32 increase increase VB 10_1101-2020_01_28_923532 240 33 𝛼 𝛼 NNS 10_1101-2020_01_28_923532 240 34 by by IN 10_1101-2020_01_28_923532 240 35 no no DT 10_1101-2020_01_28_923532 240 36 more more JJR 10_1101-2020_01_28_923532 240 37 than than IN 10_1101-2020_01_28_923532 240 38 3 3 CD 10_1101-2020_01_28_923532 240 39 to to TO 10_1101-2020_01_28_923532 240 40 obtain obtain VB 10_1101-2020_01_28_923532 240 41 the the DT 10_1101-2020_01_28_923532 240 42 smallest small JJS 10_1101-2020_01_28_923532 240 43 CTS CTS NNP 10_1101-2020_01_28_923532 240 44 sizes size NNS 10_1101-2020_01_28_923532 240 45 in in IN 10_1101-2020_01_28_923532 240 46 the the DT 10_1101-2020_01_28_923532 240 47 optimally optimally RB 10_1101-2020_01_28_923532 240 48 fair fair JJ 10_1101-2020_01_28_923532 240 49 solutions solution NNS 10_1101-2020_01_28_923532 240 50 . . . 10_1101-2020_01_28_923532 241 1 For for IN 10_1101-2020_01_28_923532 241 2 the the DT 10_1101-2020_01_28_923532 241 3 largest large JJS 10_1101-2020_01_28_923532 241 4 data data NN 10_1101-2020_01_28_923532 241 5 set set NN 10_1101-2020_01_28_923532 241 6 ( ( -LRB- 10_1101-2020_01_28_923532 241 7 melanoma melanoma NNP 10_1101-2020_01_28_923532 241 8 ) ) -RRB- 10_1101-2020_01_28_923532 241 9 , , , 10_1101-2020_01_28_923532 241 10 𝛼 𝛼 NN 10_1101-2020_01_28_923532 241 11 = = SYM 10_1101-2020_01_28_923532 241 12 4 4 CD 10_1101-2020_01_28_923532 241 13 . . . 10_1101-2020_01_28_923532 242 1 As as IN 10_1101-2020_01_28_923532 242 2 we -PRON- PRP 10_1101-2020_01_28_923532 242 3 show show VBP 10_1101-2020_01_28_923532 242 4 in in IN 10_1101-2020_01_28_923532 242 5 Supplementary Supplementary NNP 10_1101-2020_01_28_923532 242 6 Materials Materials NNP 10_1101-2020_01_28_923532 242 7 10 10 CD 10_1101-2020_01_28_923532 242 8 , , , 10_1101-2020_01_28_923532 242 9 empirically empirically RB 10_1101-2020_01_28_923532 242 10 , , , 10_1101-2020_01_28_923532 242 11 even even RB 10_1101-2020_01_28_923532 242 12 if if IN 10_1101-2020_01_28_923532 242 13 one one PRP 10_1101-2020_01_28_923532 242 14 requires require VBZ 10_1101-2020_01_28_923532 242 15 lower low JJR 10_1101-2020_01_28_923532 242 16 α α DT 10_1101-2020_01_28_923532 242 17 values value NNS 10_1101-2020_01_28_923532 242 18 , , , 10_1101-2020_01_28_923532 242 19 then then RB 10_1101-2020_01_28_923532 242 20 as as IN 10_1101-2020_01_28_923532 242 21 those those DT 10_1101-2020_01_28_923532 242 22 approach approach NN 10_1101-2020_01_28_923532 242 23 0 0 CD 10_1101-2020_01_28_923532 242 24 , , , 10_1101-2020_01_28_923532 242 25 the the DT 10_1101-2020_01_28_923532 242 26 size size NN 10_1101-2020_01_28_923532 242 27 of of IN 10_1101-2020_01_28_923532 242 28 the the DT 10_1101-2020_01_28_923532 242 29 fairness fairness NN 10_1101-2020_01_28_923532 242 30 - - HYPH 10_1101-2020_01_28_923532 242 31 based base VBN 10_1101-2020_01_28_923532 242 32 CTS CTS NNP 10_1101-2020_01_28_923532 242 33 grows grow VBZ 10_1101-2020_01_28_923532 242 34 fairly fairly RB 10_1101-2020_01_28_923532 242 35 moderately moderately RB 10_1101-2020_01_28_923532 242 36 and and CC 10_1101-2020_01_28_923532 242 37 remains remain VBZ 10_1101-2020_01_28_923532 242 38 in in IN 10_1101-2020_01_28_923532 242 39 the the DT 10_1101-2020_01_28_923532 242 40 lower low JJR 10_1101-2020_01_28_923532 242 41 double double JJ 10_1101-2020_01_28_923532 242 42 digits digit NNS 10_1101-2020_01_28_923532 242 43 , , , 10_1101-2020_01_28_923532 242 44 and and CC 10_1101-2020_01_28_923532 242 45 the the DT 10_1101-2020_01_28_923532 242 46 mean mean JJ 10_1101-2020_01_28_923532 242 47 size size NN 10_1101-2020_01_28_923532 242 48 of of IN 10_1101-2020_01_28_923532 242 49 the the DT 10_1101-2020_01_28_923532 242 50 number number NN 10_1101-2020_01_28_923532 242 51 of of IN 10_1101-2020_01_28_923532 242 52 treatments treatment NNS 10_1101-2020_01_28_923532 242 53 given give VBN 10_1101-2020_01_28_923532 242 54 to to IN 10_1101-2020_01_28_923532 242 55 each each DT 10_1101-2020_01_28_923532 242 56 patient patient NN 10_1101-2020_01_28_923532 242 57 ( ( -LRB- 10_1101-2020_01_28_923532 242 58 their -PRON- PRP$ 10_1101-2020_01_28_923532 242 59 ITS ITS NNP 10_1101-2020_01_28_923532 242 60 ) ) -RRB- 10_1101-2020_01_28_923532 242 61 is be VBZ 10_1101-2020_01_28_923532 242 62 overall overall JJ 10_1101-2020_01_28_923532 242 63 < < XX 10_1101-2020_01_28_923532 242 64 5 5 CD 10_1101-2020_01_28_923532 242 65 . . . 10_1101-2020_01_28_923532 243 1 Theoretically theoretically RB 10_1101-2020_01_28_923532 243 2 , , , 10_1101-2020_01_28_923532 243 3 we -PRON- PRP 10_1101-2020_01_28_923532 243 4 show show VBP 10_1101-2020_01_28_923532 243 5 that that IN 10_1101-2020_01_28_923532 243 6 one one PRP 10_1101-2020_01_28_923532 243 7 can can MD 10_1101-2020_01_28_923532 243 8 design design VB 10_1101-2020_01_28_923532 243 9 instances instance NNS 10_1101-2020_01_28_923532 243 10 for for IN 10_1101-2020_01_28_923532 243 11 which which WDT 10_1101-2020_01_28_923532 243 12 𝛼 𝛼 NN 10_1101-2020_01_28_923532 243 13 would would MD 10_1101-2020_01_28_923532 243 14 need need VB 10_1101-2020_01_28_923532 243 15 to to TO 10_1101-2020_01_28_923532 243 16 be be VB 10_1101-2020_01_28_923532 243 17 at at IN 10_1101-2020_01_28_923532 243 18 least least JJS 10_1101-2020_01_28_923532 243 19 √𝑛 √𝑛 NN 10_1101-2020_01_28_923532 243 20 − − NNP 10_1101-2020_01_28_923532 243 21 1 1 CD 10_1101-2020_01_28_923532 243 22 to to TO 10_1101-2020_01_28_923532 243 23 get get VB 10_1101-2020_01_28_923532 243 24 a a DT 10_1101-2020_01_28_923532 243 25 CTS CTS NNP 10_1101-2020_01_28_923532 243 26 of of IN 10_1101-2020_01_28_923532 243 27 size size NN 10_1101-2020_01_28_923532 243 28 less less JJR 10_1101-2020_01_28_923532 243 29 than than IN 10_1101-2020_01_28_923532 243 30 the the DT 10_1101-2020_01_28_923532 243 31 overall overall JJ 10_1101-2020_01_28_923532 243 32 number number NN 10_1101-2020_01_28_923532 243 33 of of IN 10_1101-2020_01_28_923532 243 34 targets target NNS 10_1101-2020_01_28_923532 243 35 𝑛 𝑛 XX 10_1101-2020_01_28_923532 243 36 ( ( -LRB- 10_1101-2020_01_28_923532 243 37 Supplementary Supplementary NNP 10_1101-2020_01_28_923532 243 38 Materials Materials NNP 10_1101-2020_01_28_923532 243 39 10 10 CD 10_1101-2020_01_28_923532 243 40 ) ) -RRB- 10_1101-2020_01_28_923532 243 41 . . . 10_1101-2020_01_28_923532 244 1 However however RB 10_1101-2020_01_28_923532 244 2 , , , 10_1101-2020_01_28_923532 244 3 in in IN 10_1101-2020_01_28_923532 244 4 practice practice NN 10_1101-2020_01_28_923532 244 5 , , , 10_1101-2020_01_28_923532 244 6 we -PRON- PRP 10_1101-2020_01_28_923532 244 7 find find VBP 10_1101-2020_01_28_923532 244 8 that that IN 10_1101-2020_01_28_923532 244 9 given give VBN 10_1101-2020_01_28_923532 244 10 the the DT 10_1101-2020_01_28_923532 244 11 current current JJ 10_1101-2020_01_28_923532 244 12 tumor tumor NN 10_1101-2020_01_28_923532 244 13 single single JJ 10_1101-2020_01_28_923532 244 14 - - HYPH 10_1101-2020_01_28_923532 244 15 cell cell NN 10_1101-2020_01_28_923532 244 16 expression expression NN 10_1101-2020_01_28_923532 244 17 data datum NNS 10_1101-2020_01_28_923532 244 18 , , , 10_1101-2020_01_28_923532 244 19 fairness fairness NN 10_1101-2020_01_28_923532 244 20 - - HYPH 10_1101-2020_01_28_923532 244 21 based base VBN 10_1101-2020_01_28_923532 244 22 treatment treatment NN 10_1101-2020_01_28_923532 244 23 strategies strategy NNS 10_1101-2020_01_28_923532 244 24 are be VBP 10_1101-2020_01_28_923532 244 25 likely likely JJ 10_1101-2020_01_28_923532 244 26 to to TO 10_1101-2020_01_28_923532 244 27 be be VB 10_1101-2020_01_28_923532 244 28 a a DT 10_1101-2020_01_28_923532 244 29 reasonable reasonable JJ 10_1101-2020_01_28_923532 244 30 economic economic JJ 10_1101-2020_01_28_923532 244 31 option option NN 10_1101-2020_01_28_923532 244 32 in in IN 10_1101-2020_01_28_923532 244 33 the the DT 10_1101-2020_01_28_923532 244 34 future future NN 10_1101-2020_01_28_923532 244 35 . . . 10_1101-2020_01_28_923532 245 1 The the DT 10_1101-2020_01_28_923532 245 2 Landscape Landscape NNP 10_1101-2020_01_28_923532 245 3 of of IN 10_1101-2020_01_28_923532 245 4 Optimal Optimal NNP 10_1101-2020_01_28_923532 245 5 Solutions Solutions NNPS 10_1101-2020_01_28_923532 245 6 Targeting Targeting NNP 10_1101-2020_01_28_923532 245 7 Receptors Receptors NNPS 10_1101-2020_01_28_923532 245 8 that that WDT 10_1101-2020_01_28_923532 245 9 are be VBP 10_1101-2020_01_28_923532 245 10 Lowly lowly JJ 10_1101-2020_01_28_923532 245 11 Expressed express VBN 10_1101-2020_01_28_923532 245 12 Across across IN 10_1101-2020_01_28_923532 245 13 Many many JJ 10_1101-2020_01_28_923532 245 14 Healthy healthy JJ 10_1101-2020_01_28_923532 245 15 Tissues tissue NNS 10_1101-2020_01_28_923532 245 16 We -PRON- PRP 10_1101-2020_01_28_923532 245 17 turn turn VBP 10_1101-2020_01_28_923532 245 18 to to TO 10_1101-2020_01_28_923532 245 19 examine examine VB 10_1101-2020_01_28_923532 245 20 the the DT 10_1101-2020_01_28_923532 245 21 space space NN 10_1101-2020_01_28_923532 245 22 of of IN 10_1101-2020_01_28_923532 245 23 optimal optimal JJ 10_1101-2020_01_28_923532 245 24 solutions solution NNS 10_1101-2020_01_28_923532 245 25 when when WRB 10_1101-2020_01_28_923532 245 26 restricting restrict VBG 10_1101-2020_01_28_923532 245 27 the the DT 10_1101-2020_01_28_923532 245 28 set set NN 10_1101-2020_01_28_923532 245 29 of of IN 10_1101-2020_01_28_923532 245 30 eligible eligible JJ 10_1101-2020_01_28_923532 245 31 surface surface NN 10_1101-2020_01_28_923532 245 32 receptor receptor NN 10_1101-2020_01_28_923532 245 33 gene gene NN 10_1101-2020_01_28_923532 245 34 targets target NNS 10_1101-2020_01_28_923532 245 35 to to IN 10_1101-2020_01_28_923532 245 36 those those DT 10_1101-2020_01_28_923532 245 37 that that WDT 10_1101-2020_01_28_923532 245 38 have have VBP 10_1101-2020_01_28_923532 245 39 lower low JJR 10_1101-2020_01_28_923532 245 40 expression expression NN 10_1101-2020_01_28_923532 245 41 across across IN 10_1101-2020_01_28_923532 245 42 many many JJ 10_1101-2020_01_28_923532 245 43 noncancerous noncancerous JJ 10_1101-2020_01_28_923532 245 44 human human JJ 10_1101-2020_01_28_923532 245 45 tissues tissue NNS 10_1101-2020_01_28_923532 245 46 ( ( -LRB- 10_1101-2020_01_28_923532 245 47 Methods Methods NNP 10_1101-2020_01_28_923532 245 48 ) ) -RRB- 10_1101-2020_01_28_923532 245 49 , , , 10_1101-2020_01_28_923532 245 50 aiming aim VBG 10_1101-2020_01_28_923532 245 51 to to TO 10_1101-2020_01_28_923532 245 52 mitigate mitigate VB 10_1101-2020_01_28_923532 245 53 potential potential JJ 10_1101-2020_01_28_923532 245 54 damage damage NN 10_1101-2020_01_28_923532 245 55 to to IN 10_1101-2020_01_28_923532 245 56 tissues tissue NNS 10_1101-2020_01_28_923532 245 57 unrelated unrelated JJ 10_1101-2020_01_28_923532 245 58 to to IN 10_1101-2020_01_28_923532 245 59 the the DT 10_1101-2020_01_28_923532 245 60 tumor tumor NN 10_1101-2020_01_28_923532 245 61 site site NN 10_1101-2020_01_28_923532 245 62 . . . 10_1101-2020_01_28_923532 246 1 To to IN 10_1101-2020_01_28_923532 246 2 this this DT 10_1101-2020_01_28_923532 246 3 end end NN 10_1101-2020_01_28_923532 246 4 , , , 10_1101-2020_01_28_923532 246 5 we -PRON- PRP 10_1101-2020_01_28_923532 246 6 selected select VBD 10_1101-2020_01_28_923532 246 7 subsets subset NNS 10_1101-2020_01_28_923532 246 8 of of IN 10_1101-2020_01_28_923532 246 9 the the DT 10_1101-2020_01_28_923532 246 10 1269 1269 CD 10_1101-2020_01_28_923532 246 11 cell cell NN 10_1101-2020_01_28_923532 246 12 surface surface NN 10_1101-2020_01_28_923532 246 13 receptor receptor NN 10_1101-2020_01_28_923532 246 14 targets target NNS 10_1101-2020_01_28_923532 246 15 in in IN 10_1101-2020_01_28_923532 246 16 which which WDT 10_1101-2020_01_28_923532 246 17 the the DT 10_1101-2020_01_28_923532 246 18 genes gene NNS 10_1101-2020_01_28_923532 246 19 have have VBP 10_1101-2020_01_28_923532 246 20 overall overall RB 10_1101-2020_01_28_923532 246 21 lower low JJR 10_1101-2020_01_28_923532 246 22 expression expression NN 10_1101-2020_01_28_923532 246 23 across across IN 10_1101-2020_01_28_923532 246 24 multiple multiple JJ 10_1101-2020_01_28_923532 246 25 normal normal JJ 10_1101-2020_01_28_923532 246 26 tissues tissue NNS 10_1101-2020_01_28_923532 246 27 , , , 10_1101-2020_01_28_923532 246 28 by by IN 10_1101-2020_01_28_923532 246 29 mining mine VBG 10_1101-2020_01_28_923532 246 30 GTEx GTEx NNS 10_1101-2020_01_28_923532 246 31 and and CC 10_1101-2020_01_28_923532 246 32 the the DT 10_1101-2020_01_28_923532 246 33 Human Human NNP 10_1101-2020_01_28_923532 246 34 Protein Protein NNP 10_1101-2020_01_28_923532 246 35 Atlas Atlas NNP 10_1101-2020_01_28_923532 246 36 ( ( -LRB- 10_1101-2020_01_28_923532 246 37 HPA HPA NNP 10_1101-2020_01_28_923532 246 38 ) ) -RRB- 10_1101-2020_01_28_923532 246 39 ( ( -LRB- 10_1101-2020_01_28_923532 246 40 Methods Methods NNP 10_1101-2020_01_28_923532 246 41 ) ) -RRB- 10_1101-2020_01_28_923532 246 42 . . . 10_1101-2020_01_28_923532 247 1 Varying vary VBG 10_1101-2020_01_28_923532 247 2 the the DT 10_1101-2020_01_28_923532 247 3 selectivity selectivity NN 10_1101-2020_01_28_923532 247 4 expression expression NN 10_1101-2020_01_28_923532 247 5 thresholds threshold NNS 10_1101-2020_01_28_923532 247 6 ( ( -LRB- 10_1101-2020_01_28_923532 247 7 expressed express VBN 10_1101-2020_01_28_923532 247 8 in in IN 10_1101-2020_01_28_923532 247 9 transcripts transcript NNS 10_1101-2020_01_28_923532 247 10 per per IN 10_1101-2020_01_28_923532 247 11 million million CD 10_1101-2020_01_28_923532 247 12 ( ( -LRB- 10_1101-2020_01_28_923532 247 13 TPM TPM NNP 10_1101-2020_01_28_923532 247 14 ) ) -RRB- 10_1101-2020_01_28_923532 247 15 ) ) -RRB- 10_1101-2020_01_28_923532 247 16 used use VBN 10_1101-2020_01_28_923532 247 17 to to TO 10_1101-2020_01_28_923532 247 18 filter filter VB 10_1101-2020_01_28_923532 247 19 out out RP 10_1101-2020_01_28_923532 247 20 genes gene NNS 10_1101-2020_01_28_923532 247 21 whose whose WP$ 10_1101-2020_01_28_923532 247 22 mean mean VBP 10_1101-2020_01_28_923532 247 23 expression expression NN 10_1101-2020_01_28_923532 247 24 across across IN 10_1101-2020_01_28_923532 247 25 the the DT 10_1101-2020_01_28_923532 247 26 normal normal JJ 10_1101-2020_01_28_923532 247 27 adult adult NN 10_1101-2020_01_28_923532 247 28 tissues tissue NNS 10_1101-2020_01_28_923532 247 29 is be VBZ 10_1101-2020_01_28_923532 247 30 above above IN 10_1101-2020_01_28_923532 247 31 values value NNS 10_1101-2020_01_28_923532 247 32 of of IN 10_1101-2020_01_28_923532 247 33 10 10 CD 10_1101-2020_01_28_923532 247 34 , , , 10_1101-2020_01_28_923532 247 35 5 5 CD 10_1101-2020_01_28_923532 247 36 , , , 10_1101-2020_01_28_923532 247 37 2 2 CD 10_1101-2020_01_28_923532 247 38 , , , 10_1101-2020_01_28_923532 247 39 1 1 CD 10_1101-2020_01_28_923532 247 40 , , , 10_1101-2020_01_28_923532 247 41 0.5 0.5 CD 10_1101-2020_01_28_923532 247 42 , , , 10_1101-2020_01_28_923532 247 43 and and CC 10_1101-2020_01_28_923532 247 44 0.25 0.25 CD 10_1101-2020_01_28_923532 247 45 ( ( -LRB- 10_1101-2020_01_28_923532 247 46 i.e. i.e. FW 10_1101-2020_01_28_923532 247 47 , , , 10_1101-2020_01_28_923532 247 48 employing employ VBG 10_1101-2020_01_28_923532 247 49 more more JJR 10_1101-2020_01_28_923532 247 50 and and CC 10_1101-2020_01_28_923532 247 51 more more RBR 10_1101-2020_01_28_923532 247 52 extensive extensive JJ 10_1101-2020_01_28_923532 247 53 105 105 CD 10_1101-2020_01_28_923532 247 54 and and CC 10_1101-2020_01_28_923532 247 55 is be VBZ 10_1101-2020_01_28_923532 247 56 also also RB 10_1101-2020_01_28_923532 247 57 made make VBN 10_1101-2020_01_28_923532 247 58 available available JJ 10_1101-2020_01_28_923532 247 59 for for IN 10_1101-2020_01_28_923532 247 60 use use NN 10_1101-2020_01_28_923532 247 61 under under IN 10_1101-2020_01_28_923532 247 62 a a DT 10_1101-2020_01_28_923532 247 63 CC0 CC0 NNP 10_1101-2020_01_28_923532 247 64 license license NN 10_1101-2020_01_28_923532 247 65 . . . 10_1101-2020_01_28_923532 248 1 ( ( -LRB- 10_1101-2020_01_28_923532 248 2 which which WDT 10_1101-2020_01_28_923532 248 3 was be VBD 10_1101-2020_01_28_923532 248 4 not not RB 10_1101-2020_01_28_923532 248 5 certified certify VBN 10_1101-2020_01_28_923532 248 6 by by IN 10_1101-2020_01_28_923532 248 7 peer peer NN 10_1101-2020_01_28_923532 248 8 review review NN 10_1101-2020_01_28_923532 248 9 ) ) -RRB- 10_1101-2020_01_28_923532 248 10 is be VBZ 10_1101-2020_01_28_923532 248 11 the the DT 10_1101-2020_01_28_923532 248 12 author author NN 10_1101-2020_01_28_923532 248 13 / / SYM 10_1101-2020_01_28_923532 248 14 funder funder NN 10_1101-2020_01_28_923532 248 15 . . . 10_1101-2020_01_28_923532 249 1 This this DT 10_1101-2020_01_28_923532 249 2 article article NN 10_1101-2020_01_28_923532 249 3 is be VBZ 10_1101-2020_01_28_923532 249 4 a a DT 10_1101-2020_01_28_923532 249 5 US US NNP 10_1101-2020_01_28_923532 249 6 Government Government NNP 10_1101-2020_01_28_923532 249 7 work work NN 10_1101-2020_01_28_923532 249 8 . . . 10_1101-2020_01_28_923532 250 1 It -PRON- PRP 10_1101-2020_01_28_923532 250 2 is be VBZ 10_1101-2020_01_28_923532 250 3 not not RB 10_1101-2020_01_28_923532 250 4 subject subject JJ 10_1101-2020_01_28_923532 250 5 to to IN 10_1101-2020_01_28_923532 250 6 copyright copyright NN 10_1101-2020_01_28_923532 250 7 under under IN 10_1101-2020_01_28_923532 250 8 17 17 CD 10_1101-2020_01_28_923532 250 9 USC usc NN 10_1101-2020_01_28_923532 250 10 The the DT 10_1101-2020_01_28_923532 250 11 copyright copyright NN 10_1101-2020_01_28_923532 250 12 holder holder NN 10_1101-2020_01_28_923532 250 13 for for IN 10_1101-2020_01_28_923532 250 14 this this DT 10_1101-2020_01_28_923532 250 15 preprintthis preprintthis NN 10_1101-2020_01_28_923532 250 16 version version NN 10_1101-2020_01_28_923532 250 17 posted post VBD 10_1101-2020_01_28_923532 250 18 February February NNP 10_1101-2020_01_28_923532 250 19 12 12 CD 10_1101-2020_01_28_923532 250 20 , , , 10_1101-2020_01_28_923532 250 21 2021 2021 CD 10_1101-2020_01_28_923532 250 22 . . . 10_1101-2020_01_28_923532 250 23 ; ; : 10_1101-2020_01_28_923532 250 24 https://doi.org/10.1101/2020.01.28.923532doi https://doi.org/10.1101/2020.01.28.923532doi ADD 10_1101-2020_01_28_923532 250 25 : : : 10_1101-2020_01_28_923532 250 26 bioRxiv biorxiv VB 10_1101-2020_01_28_923532 250 27 preprint preprint NN 10_1101-2020_01_28_923532 250 28 https://doi.org/10.1101/2020.01.28.923532 https://doi.org/10.1101/2020.01.28.923532 UH 10_1101-2020_01_28_923532 250 29 21 21 CD 10_1101-2020_01_28_923532 250 30 filtering filter VBG 10_1101-2020_01_28_923532 250 31 as as IN 10_1101-2020_01_28_923532 250 32 this this DT 10_1101-2020_01_28_923532 250 33 threshold threshold NN 10_1101-2020_01_28_923532 250 34 is be VBZ 10_1101-2020_01_28_923532 250 35 decreased decrease VBN 10_1101-2020_01_28_923532 250 36 ) ) -RRB- 10_1101-2020_01_28_923532 250 37 , , , 10_1101-2020_01_28_923532 250 38 decreases decrease VBZ 10_1101-2020_01_28_923532 250 39 the the DT 10_1101-2020_01_28_923532 250 40 size size NN 10_1101-2020_01_28_923532 250 41 of of IN 10_1101-2020_01_28_923532 250 42 the the DT 10_1101-2020_01_28_923532 250 43 target target NN 10_1101-2020_01_28_923532 250 44 cell cell NN 10_1101-2020_01_28_923532 250 45 surface surface NN 10_1101-2020_01_28_923532 250 46 receptor receptor NN 10_1101-2020_01_28_923532 250 47 gene gene NN 10_1101-2020_01_28_923532 250 48 list list NN 10_1101-2020_01_28_923532 250 49 by by IN 10_1101-2020_01_28_923532 250 50 more more JJR 10_1101-2020_01_28_923532 250 51 than than IN 10_1101-2020_01_28_923532 250 52 half half NN 10_1101-2020_01_28_923532 250 53 ( ( -LRB- 10_1101-2020_01_28_923532 250 54 Table table NN 10_1101-2020_01_28_923532 250 55 2 2 CD 10_1101-2020_01_28_923532 250 56 ) ) -RRB- 10_1101-2020_01_28_923532 250 57 . . . 10_1101-2020_01_28_923532 251 1 As as IN 10_1101-2020_01_28_923532 251 2 shown show VBN 10_1101-2020_01_28_923532 251 3 in in IN 10_1101-2020_01_28_923532 251 4 Figures figure NNS 10_1101-2020_01_28_923532 251 5 7A 7a NN 10_1101-2020_01_28_923532 251 6 , , , 10_1101-2020_01_28_923532 251 7 B b NN 10_1101-2020_01_28_923532 251 8 ( ( -LRB- 10_1101-2020_01_28_923532 251 9 and and CC 10_1101-2020_01_28_923532 251 10 Supplementary Supplementary NNP 10_1101-2020_01_28_923532 251 11 Figures Figures NNPS 10_1101-2020_01_28_923532 251 12 S24-S26 S24-S26 NNP 10_1101-2020_01_28_923532 251 13 ) ) -RRB- 10_1101-2020_01_28_923532 251 14 , , , 10_1101-2020_01_28_923532 251 15 MadHitter MadHitter NNP 10_1101-2020_01_28_923532 251 16 identifies identify VBZ 10_1101-2020_01_28_923532 251 17 very very RB 10_1101-2020_01_28_923532 251 18 different different JJ 10_1101-2020_01_28_923532 251 19 cohort cohort NN 10_1101-2020_01_28_923532 251 20 target target NN 10_1101-2020_01_28_923532 251 21 sets set NNS 10_1101-2020_01_28_923532 251 22 ( ( -LRB- 10_1101-2020_01_28_923532 251 23 which which WDT 10_1101-2020_01_28_923532 251 24 are be VBP 10_1101-2020_01_28_923532 251 25 larger large JJR 10_1101-2020_01_28_923532 251 26 than than IN 10_1101-2020_01_28_923532 251 27 the the DT 10_1101-2020_01_28_923532 251 28 original original JJ 10_1101-2020_01_28_923532 251 29 optimal optimal JJ 10_1101-2020_01_28_923532 251 30 solutions solution NNS 10_1101-2020_01_28_923532 251 31 , , , 10_1101-2020_01_28_923532 251 32 as as IN 10_1101-2020_01_28_923532 251 33 expected expect VBN 10_1101-2020_01_28_923532 251 34 ) ) -RRB- 10_1101-2020_01_28_923532 251 35 as as IN 10_1101-2020_01_28_923532 251 36 the the DT 10_1101-2020_01_28_923532 251 37 TPM TPM NNP 10_1101-2020_01_28_923532 251 38 selectivity selectivity NN 10_1101-2020_01_28_923532 251 39 threshold threshold NN 10_1101-2020_01_28_923532 251 40 value value NN 10_1101-2020_01_28_923532 251 41 is be VBZ 10_1101-2020_01_28_923532 251 42 decreased decrease VBN 10_1101-2020_01_28_923532 251 43 . . . 10_1101-2020_01_28_923532 252 1 Furthermore furthermore RB 10_1101-2020_01_28_923532 252 2 , , , 10_1101-2020_01_28_923532 252 3 different different JJ 10_1101-2020_01_28_923532 252 4 ITS its PRP$ 10_1101-2020_01_28_923532 252 5 instances instance NNS 10_1101-2020_01_28_923532 252 6 may may MD 10_1101-2020_01_28_923532 252 7 become become VB 10_1101-2020_01_28_923532 252 8 infeasible infeasible JJ 10_1101-2020_01_28_923532 252 9 ( ( -LRB- 10_1101-2020_01_28_923532 252 10 Supplementary Supplementary NNP 10_1101-2020_01_28_923532 252 11 Figure Figure NNP 10_1101-2020_01_28_923532 252 12 S27 S27 NNP 10_1101-2020_01_28_923532 252 13 ) ) -RRB- 10_1101-2020_01_28_923532 252 14 . . . 10_1101-2020_01_28_923532 253 1 At at IN 10_1101-2020_01_28_923532 253 2 an an DT 10_1101-2020_01_28_923532 253 3 individual individual JJ 10_1101-2020_01_28_923532 253 4 patient patient JJ 10_1101-2020_01_28_923532 253 5 level level NN 10_1101-2020_01_28_923532 253 6 , , , 10_1101-2020_01_28_923532 253 7 using use VBG 10_1101-2020_01_28_923532 253 8 lower low JJR 10_1101-2020_01_28_923532 253 9 selectivity selectivity NN 10_1101-2020_01_28_923532 253 10 threshold threshold NN 10_1101-2020_01_28_923532 253 11 levels level NNS 10_1101-2020_01_28_923532 253 12 , , , 10_1101-2020_01_28_923532 253 13 which which WDT 10_1101-2020_01_28_923532 253 14 leads lead VBZ 10_1101-2020_01_28_923532 253 15 to to IN 10_1101-2020_01_28_923532 253 16 a a DT 10_1101-2020_01_28_923532 253 17 smaller small JJR 10_1101-2020_01_28_923532 253 18 space space NN 10_1101-2020_01_28_923532 253 19 of of IN 10_1101-2020_01_28_923532 253 20 membrane membrane NN 10_1101-2020_01_28_923532 253 21 receptors receptor NNS 10_1101-2020_01_28_923532 253 22 to to TO 10_1101-2020_01_28_923532 253 23 choose choose VB 10_1101-2020_01_28_923532 253 24 from from IN 10_1101-2020_01_28_923532 253 25 , , , 10_1101-2020_01_28_923532 253 26 also also RB 10_1101-2020_01_28_923532 253 27 leads lead VBZ 10_1101-2020_01_28_923532 253 28 to to IN 10_1101-2020_01_28_923532 253 29 increased increase VBN 10_1101-2020_01_28_923532 253 30 mean mean VB 10_1101-2020_01_28_923532 253 31 ITS its PRP$ 10_1101-2020_01_28_923532 253 32 sizes size NNS 10_1101-2020_01_28_923532 253 33 ( ( -LRB- 10_1101-2020_01_28_923532 253 34 Supplementary Supplementary NNP 10_1101-2020_01_28_923532 253 35 Figures Figures NNPS 10_1101-2020_01_28_923532 253 36 S28 S28 NNP 10_1101-2020_01_28_923532 253 37 , , , 10_1101-2020_01_28_923532 253 38 S29 S29 NNP 10_1101-2020_01_28_923532 253 39 ) ) -RRB- 10_1101-2020_01_28_923532 253 40 . . . 10_1101-2020_01_28_923532 254 1 Across across IN 10_1101-2020_01_28_923532 254 2 the the DT 10_1101-2020_01_28_923532 254 3 nine nine CD 10_1101-2020_01_28_923532 254 4 data data NN 10_1101-2020_01_28_923532 254 5 sets set NNS 10_1101-2020_01_28_923532 254 6 , , , 10_1101-2020_01_28_923532 254 7 the the DT 10_1101-2020_01_28_923532 254 8 selectivity selectivity NN 10_1101-2020_01_28_923532 254 9 threshold threshold NN 10_1101-2020_01_28_923532 254 10 at at IN 10_1101-2020_01_28_923532 254 11 which which WDT 10_1101-2020_01_28_923532 254 12 the the DT 10_1101-2020_01_28_923532 254 13 CTS CTS NNP 10_1101-2020_01_28_923532 254 14 problem problem NN 10_1101-2020_01_28_923532 254 15 became become VBD 10_1101-2020_01_28_923532 254 16 infeasible infeasible JJ 10_1101-2020_01_28_923532 254 17 varied varied JJ 10_1101-2020_01_28_923532 254 18 ( ( -LRB- 10_1101-2020_01_28_923532 254 19 Supplementary Supplementary NNP 10_1101-2020_01_28_923532 254 20 Figure Figure NNP 10_1101-2020_01_28_923532 254 21 S27 S27 NNP 10_1101-2020_01_28_923532 254 22 ) ) -RRB- 10_1101-2020_01_28_923532 254 23 . . . 10_1101-2020_01_28_923532 255 1 The the DT 10_1101-2020_01_28_923532 255 2 differences difference NNS 10_1101-2020_01_28_923532 255 3 observed observe VBN 10_1101-2020_01_28_923532 255 4 could could MD 10_1101-2020_01_28_923532 255 5 be be VB 10_1101-2020_01_28_923532 255 6 the the DT 10_1101-2020_01_28_923532 255 7 result result NN 10_1101-2020_01_28_923532 255 8 of of IN 10_1101-2020_01_28_923532 255 9 expression expression NN 10_1101-2020_01_28_923532 255 10 heterogeneity heterogeneity NN 10_1101-2020_01_28_923532 255 11 of of IN 10_1101-2020_01_28_923532 255 12 the the DT 10_1101-2020_01_28_923532 255 13 cancer cancer NN 10_1101-2020_01_28_923532 255 14 , , , 10_1101-2020_01_28_923532 255 15 number number NN 10_1101-2020_01_28_923532 255 16 of of IN 10_1101-2020_01_28_923532 255 17 patients patient NNS 10_1101-2020_01_28_923532 255 18 within within IN 10_1101-2020_01_28_923532 255 19 the the DT 10_1101-2020_01_28_923532 255 20 data data NN 10_1101-2020_01_28_923532 255 21 set set NN 10_1101-2020_01_28_923532 255 22 , , , 10_1101-2020_01_28_923532 255 23 size size NN 10_1101-2020_01_28_923532 255 24 of of IN 10_1101-2020_01_28_923532 255 25 target target NN 10_1101-2020_01_28_923532 255 26 gene gene NN 10_1101-2020_01_28_923532 255 27 set set NN 10_1101-2020_01_28_923532 255 28 , , , 10_1101-2020_01_28_923532 255 29 lack lack NN 10_1101-2020_01_28_923532 255 30 of of IN 10_1101-2020_01_28_923532 255 31 expression expression NN 10_1101-2020_01_28_923532 255 32 of of IN 10_1101-2020_01_28_923532 255 33 available available JJ 10_1101-2020_01_28_923532 255 34 gene gene NN 10_1101-2020_01_28_923532 255 35 targets target NNS 10_1101-2020_01_28_923532 255 36 and and CC 10_1101-2020_01_28_923532 255 37 other other JJ 10_1101-2020_01_28_923532 255 38 unknown unknown JJ 10_1101-2020_01_28_923532 255 39 factors factor NNS 10_1101-2020_01_28_923532 255 40 . . . 10_1101-2020_01_28_923532 256 1 In in IN 10_1101-2020_01_28_923532 256 2 the the DT 10_1101-2020_01_28_923532 256 3 future future NN 10_1101-2020_01_28_923532 256 4 , , , 10_1101-2020_01_28_923532 256 5 further further JJ 10_1101-2020_01_28_923532 256 6 experimentation experimentation NN 10_1101-2020_01_28_923532 256 7 is be VBZ 10_1101-2020_01_28_923532 256 8 required require VBN 10_1101-2020_01_28_923532 256 9 to to TO 10_1101-2020_01_28_923532 256 10 identify identify VB 10_1101-2020_01_28_923532 256 11 tissue tissue NN 10_1101-2020_01_28_923532 256 12 - - HYPH 10_1101-2020_01_28_923532 256 13 specific specific JJ 10_1101-2020_01_28_923532 256 14 optimal optimal JJ 10_1101-2020_01_28_923532 256 15 gene gene NN 10_1101-2020_01_28_923532 256 16 expression expression NN 10_1101-2020_01_28_923532 256 17 thresholds threshold NNS 10_1101-2020_01_28_923532 256 18 that that WDT 10_1101-2020_01_28_923532 256 19 will will MD 10_1101-2020_01_28_923532 256 20 minimize minimize VB 10_1101-2020_01_28_923532 256 21 side side NN 10_1101-2020_01_28_923532 256 22 effects effect NNS 10_1101-2020_01_28_923532 256 23 while while IN 10_1101-2020_01_28_923532 256 24 allowing allow VBG 10_1101-2020_01_28_923532 256 25 cancer cancer NN 10_1101-2020_01_28_923532 256 26 cells cell NNS 10_1101-2020_01_28_923532 256 27 to to TO 10_1101-2020_01_28_923532 256 28 be be VB 10_1101-2020_01_28_923532 256 29 killed kill VBN 10_1101-2020_01_28_923532 256 30 by by IN 10_1101-2020_01_28_923532 256 31 combinations combination NNS 10_1101-2020_01_28_923532 256 32 of of IN 10_1101-2020_01_28_923532 256 33 targeted target VBN 10_1101-2020_01_28_923532 256 34 therapies therapy NNS 10_1101-2020_01_28_923532 256 35 . . . 10_1101-2020_01_28_923532 257 1 Finally finally RB 10_1101-2020_01_28_923532 257 2 , , , 10_1101-2020_01_28_923532 257 3 for for IN 10_1101-2020_01_28_923532 257 4 completeness completeness NN 10_1101-2020_01_28_923532 257 5 , , , 10_1101-2020_01_28_923532 257 6 we -PRON- PRP 10_1101-2020_01_28_923532 257 7 also also RB 10_1101-2020_01_28_923532 257 8 tested test VBD 10_1101-2020_01_28_923532 257 9 MadHitter MadHitter NNP 10_1101-2020_01_28_923532 257 10 on on IN 10_1101-2020_01_28_923532 257 11 the the DT 10_1101-2020_01_28_923532 257 12 set set NN 10_1101-2020_01_28_923532 257 13 of of IN 10_1101-2020_01_28_923532 257 14 533 533 CD 10_1101-2020_01_28_923532 257 15 lowly lowly JJ 10_1101-2020_01_28_923532 257 16 expressed express VBN 10_1101-2020_01_28_923532 257 17 genes gene NNS 10_1101-2020_01_28_923532 257 18 suggested suggest VBN 10_1101-2020_01_28_923532 257 19 by by IN 10_1101-2020_01_28_923532 257 20 MacKay MacKay NNP 10_1101-2020_01_28_923532 257 21 et et NNP 10_1101-2020_01_28_923532 257 22 al.25 al.25 IN 10_1101-2020_01_28_923532 257 23 All all DT 10_1101-2020_01_28_923532 257 24 instances instance NNS 10_1101-2020_01_28_923532 257 25 with with IN 10_1101-2020_01_28_923532 257 26 default default NN 10_1101-2020_01_28_923532 257 27 setting setting NN 10_1101-2020_01_28_923532 257 28 of of IN 10_1101-2020_01_28_923532 257 29 𝑟 𝑟 NNP 10_1101-2020_01_28_923532 257 30 , , , 10_1101-2020_01_28_923532 257 31 𝑙𝑏 𝑙𝑏 NNP 10_1101-2020_01_28_923532 257 32 , , , 10_1101-2020_01_28_923532 257 33 𝑢𝑏 𝑢𝑏 NNP 10_1101-2020_01_28_923532 257 34 have have VBP 10_1101-2020_01_28_923532 257 35 feasible feasible JJ 10_1101-2020_01_28_923532 257 36 solutions solution NNS 10_1101-2020_01_28_923532 257 37 for for IN 10_1101-2020_01_28_923532 257 38 all all DT 10_1101-2020_01_28_923532 257 39 patients patient NNS 10_1101-2020_01_28_923532 257 40 . . . 10_1101-2020_01_28_923532 258 1 Mean mean VB 10_1101-2020_01_28_923532 258 2 ITS its PRP$ 10_1101-2020_01_28_923532 258 3 sizes size NNS 10_1101-2020_01_28_923532 258 4 are be VBP 10_1101-2020_01_28_923532 258 5 below below IN 10_1101-2020_01_28_923532 258 6 4 4 CD 10_1101-2020_01_28_923532 258 7 for for IN 10_1101-2020_01_28_923532 258 8 eight eight CD 10_1101-2020_01_28_923532 258 9 of of IN 10_1101-2020_01_28_923532 258 10 nine nine CD 10_1101-2020_01_28_923532 258 11 data data NN 10_1101-2020_01_28_923532 258 12 sets set NNS 10_1101-2020_01_28_923532 258 13 , , , 10_1101-2020_01_28_923532 258 14 but but CC 10_1101-2020_01_28_923532 258 15 close close RB 10_1101-2020_01_28_923532 258 16 to to TO 10_1101-2020_01_28_923532 258 17 10 10 CD 10_1101-2020_01_28_923532 258 18 for for IN 10_1101-2020_01_28_923532 258 19 the the DT 10_1101-2020_01_28_923532 258 20 brain brain NN 10_1101-2020_01_28_923532 258 21 cancer cancer NN 10_1101-2020_01_28_923532 258 22 data datum NNS 10_1101-2020_01_28_923532 258 23 set set VBD 10_1101-2020_01_28_923532 258 24 GSE84465 GSE84465 NNP 10_1101-2020_01_28_923532 258 25 . . . 10_1101-2020_01_28_923532 259 1 More More JJR 10_1101-2020_01_28_923532 259 2 details detail NNS 10_1101-2020_01_28_923532 259 3 can can MD 10_1101-2020_01_28_923532 259 4 be be VB 10_1101-2020_01_28_923532 259 5 found find VBN 10_1101-2020_01_28_923532 259 6 in in IN 10_1101-2020_01_28_923532 259 7 Supplementary Supplementary NNP 10_1101-2020_01_28_923532 259 8 Materials Materials NNP 10_1101-2020_01_28_923532 259 9 11 11 CD 10_1101-2020_01_28_923532 259 10 and and CC 10_1101-2020_01_28_923532 259 11 Table Table NNP 10_1101-2020_01_28_923532 259 12 S3 S3 NNP 10_1101-2020_01_28_923532 259 13 . . . 10_1101-2020_01_28_923532 260 1 105 105 CD 10_1101-2020_01_28_923532 260 2 and and CC 10_1101-2020_01_28_923532 260 3 is be VBZ 10_1101-2020_01_28_923532 260 4 also also RB 10_1101-2020_01_28_923532 260 5 made make VBN 10_1101-2020_01_28_923532 260 6 available available JJ 10_1101-2020_01_28_923532 260 7 for for IN 10_1101-2020_01_28_923532 260 8 use use NN 10_1101-2020_01_28_923532 260 9 under under IN 10_1101-2020_01_28_923532 260 10 a a DT 10_1101-2020_01_28_923532 260 11 CC0 CC0 NNP 10_1101-2020_01_28_923532 260 12 license license NN 10_1101-2020_01_28_923532 260 13 . . . 10_1101-2020_01_28_923532 261 1 ( ( -LRB- 10_1101-2020_01_28_923532 261 2 which which WDT 10_1101-2020_01_28_923532 261 3 was be VBD 10_1101-2020_01_28_923532 261 4 not not RB 10_1101-2020_01_28_923532 261 5 certified certify VBN 10_1101-2020_01_28_923532 261 6 by by IN 10_1101-2020_01_28_923532 261 7 peer peer NN 10_1101-2020_01_28_923532 261 8 review review NN 10_1101-2020_01_28_923532 261 9 ) ) -RRB- 10_1101-2020_01_28_923532 261 10 is be VBZ 10_1101-2020_01_28_923532 261 11 the the DT 10_1101-2020_01_28_923532 261 12 author author NN 10_1101-2020_01_28_923532 261 13 / / SYM 10_1101-2020_01_28_923532 261 14 funder funder NN 10_1101-2020_01_28_923532 261 15 . . . 10_1101-2020_01_28_923532 262 1 This this DT 10_1101-2020_01_28_923532 262 2 article article NN 10_1101-2020_01_28_923532 262 3 is be VBZ 10_1101-2020_01_28_923532 262 4 a a DT 10_1101-2020_01_28_923532 262 5 US US NNP 10_1101-2020_01_28_923532 262 6 Government Government NNP 10_1101-2020_01_28_923532 262 7 work work NN 10_1101-2020_01_28_923532 262 8 . . . 10_1101-2020_01_28_923532 263 1 It -PRON- PRP 10_1101-2020_01_28_923532 263 2 is be VBZ 10_1101-2020_01_28_923532 263 3 not not RB 10_1101-2020_01_28_923532 263 4 subject subject JJ 10_1101-2020_01_28_923532 263 5 to to IN 10_1101-2020_01_28_923532 263 6 copyright copyright NN 10_1101-2020_01_28_923532 263 7 under under IN 10_1101-2020_01_28_923532 263 8 17 17 CD 10_1101-2020_01_28_923532 263 9 USC usc NN 10_1101-2020_01_28_923532 263 10 The the DT 10_1101-2020_01_28_923532 263 11 copyright copyright NN 10_1101-2020_01_28_923532 263 12 holder holder NN 10_1101-2020_01_28_923532 263 13 for for IN 10_1101-2020_01_28_923532 263 14 this this DT 10_1101-2020_01_28_923532 263 15 preprintthis preprintthis NN 10_1101-2020_01_28_923532 263 16 version version NN 10_1101-2020_01_28_923532 263 17 posted post VBD 10_1101-2020_01_28_923532 263 18 February February NNP 10_1101-2020_01_28_923532 263 19 12 12 CD 10_1101-2020_01_28_923532 263 20 , , , 10_1101-2020_01_28_923532 263 21 2021 2021 CD 10_1101-2020_01_28_923532 263 22 . . . 10_1101-2020_01_28_923532 263 23 ; ; : 10_1101-2020_01_28_923532 263 24 https://doi.org/10.1101/2020.01.28.923532doi https://doi.org/10.1101/2020.01.28.923532doi ADD 10_1101-2020_01_28_923532 263 25 : : : 10_1101-2020_01_28_923532 263 26 bioRxiv biorxiv VB 10_1101-2020_01_28_923532 263 27 preprint preprint NN 10_1101-2020_01_28_923532 263 28 https://doi.org/10.1101/2020.01.28.923532 https://doi.org/10.1101/2020.01.28.923532 UH 10_1101-2020_01_28_923532 263 29 22 22 CD 10_1101-2020_01_28_923532 263 30 Figure figure NN 10_1101-2020_01_28_923532 263 31 7 7 CD 10_1101-2020_01_28_923532 263 32 . . . 10_1101-2020_01_28_923532 264 1 Variation variation NN 10_1101-2020_01_28_923532 264 2 in in IN 10_1101-2020_01_28_923532 264 3 the the DT 10_1101-2020_01_28_923532 264 4 CTS CTS NNP 10_1101-2020_01_28_923532 264 5 size size NN 10_1101-2020_01_28_923532 264 6 and and CC 10_1101-2020_01_28_923532 264 7 composition composition NN 10_1101-2020_01_28_923532 264 8 as as IN 10_1101-2020_01_28_923532 264 9 function function NN 10_1101-2020_01_28_923532 264 10 of of IN 10_1101-2020_01_28_923532 264 11 the the DT 10_1101-2020_01_28_923532 264 12 magnitude magnitude NN 10_1101-2020_01_28_923532 264 13 of of IN 10_1101-2020_01_28_923532 264 14 filtering filtering NN 10_1101-2020_01_28_923532 264 15 of of IN 10_1101-2020_01_28_923532 264 16 genes gene NNS 10_1101-2020_01_28_923532 264 17 expressed express VBN 10_1101-2020_01_28_923532 264 18 in in IN 10_1101-2020_01_28_923532 264 19 noncancerous noncancerous JJ 10_1101-2020_01_28_923532 264 20 human human JJ 10_1101-2020_01_28_923532 264 21 tissues tissue NNS 10_1101-2020_01_28_923532 264 22 , , , 10_1101-2020_01_28_923532 264 23 for for IN 10_1101-2020_01_28_923532 264 24 different different JJ 10_1101-2020_01_28_923532 264 25 tumor tumor NN 10_1101-2020_01_28_923532 264 26 types type NNS 10_1101-2020_01_28_923532 264 27 . . . 10_1101-2020_01_28_923532 265 1 ( ( -LRB- 10_1101-2020_01_28_923532 265 2 A- A- NNP 10_1101-2020_01_28_923532 265 3 B B NNP 10_1101-2020_01_28_923532 265 4 ) ) -RRB- 10_1101-2020_01_28_923532 265 5 The the DT 10_1101-2020_01_28_923532 265 6 number number NN 10_1101-2020_01_28_923532 265 7 of of IN 10_1101-2020_01_28_923532 265 8 times time NNS 10_1101-2020_01_28_923532 265 9 a a DT 10_1101-2020_01_28_923532 265 10 gene gene NN 10_1101-2020_01_28_923532 265 11 ( ( -LRB- 10_1101-2020_01_28_923532 265 12 cell cell NN 10_1101-2020_01_28_923532 265 13 - - HYPH 10_1101-2020_01_28_923532 265 14 surface surface NN 10_1101-2020_01_28_923532 265 15 receptor receptor NN 10_1101-2020_01_28_923532 265 16 ) ) -RRB- 10_1101-2020_01_28_923532 265 17 is be VBZ 10_1101-2020_01_28_923532 265 18 included include VBN 10_1101-2020_01_28_923532 265 19 in in IN 10_1101-2020_01_28_923532 265 20 the the DT 10_1101-2020_01_28_923532 265 21 CTS CTS NNP 10_1101-2020_01_28_923532 265 22 ( ( -LRB- 10_1101-2020_01_28_923532 265 23 out out IN 10_1101-2020_01_28_923532 265 24 of of IN 10_1101-2020_01_28_923532 265 25 20 20 CD 10_1101-2020_01_28_923532 265 26 replicates replicate NNS 10_1101-2020_01_28_923532 265 27 , , , 10_1101-2020_01_28_923532 265 28 which which WDT 10_1101-2020_01_28_923532 265 29 is be VBZ 10_1101-2020_01_28_923532 265 30 therefore therefore RB 10_1101-2020_01_28_923532 265 31 the the DT 10_1101-2020_01_28_923532 265 32 Max Max NNP 10_1101-2020_01_28_923532 265 33 count count NN 10_1101-2020_01_28_923532 265 34 in in IN 10_1101-2020_01_28_923532 265 35 panels panel NNS 10_1101-2020_01_28_923532 265 36 A A NNP 10_1101-2020_01_28_923532 265 37 - - HYPH 10_1101-2020_01_28_923532 265 38 B b NN 10_1101-2020_01_28_923532 265 39 ) ) -RRB- 10_1101-2020_01_28_923532 265 40 , , , 10_1101-2020_01_28_923532 265 41 where where WRB 10_1101-2020_01_28_923532 265 42 each each DT 10_1101-2020_01_28_923532 265 43 column column NN 10_1101-2020_01_28_923532 265 44 presents present VBZ 10_1101-2020_01_28_923532 265 45 the the DT 10_1101-2020_01_28_923532 265 46 CTS CTS NNP 10_1101-2020_01_28_923532 265 47 solutions solution NNS 10_1101-2020_01_28_923532 265 48 when when WRB 10_1101-2020_01_28_923532 265 49 the the DT 10_1101-2020_01_28_923532 265 50 input input NN 10_1101-2020_01_28_923532 265 51 target target NN 10_1101-2020_01_28_923532 265 52 genes gene NNS 10_1101-2020_01_28_923532 265 53 sets set NNS 10_1101-2020_01_28_923532 265 54 are be VBP 10_1101-2020_01_28_923532 265 55 filtered filter VBN 10_1101-2020_01_28_923532 265 56 using use VBG 10_1101-2020_01_28_923532 265 57 a a DT 10_1101-2020_01_28_923532 265 58 specific specific JJ 10_1101-2020_01_28_923532 265 59 TPM tpm JJ 10_1101-2020_01_28_923532 265 60 filtering filtering NN 10_1101-2020_01_28_923532 265 61 threshold threshold NN 10_1101-2020_01_28_923532 265 62 ( ( -LRB- 10_1101-2020_01_28_923532 265 63 Methods Methods NNP 10_1101-2020_01_28_923532 265 64 ) ) -RRB- 10_1101-2020_01_28_923532 265 65 , , , 10_1101-2020_01_28_923532 265 66 for for IN 10_1101-2020_01_28_923532 265 67 ( ( -LRB- 10_1101-2020_01_28_923532 265 68 A a NN 10_1101-2020_01_28_923532 265 69 ) ) -RRB- 10_1101-2020_01_28_923532 265 70 a a DT 10_1101-2020_01_28_923532 265 71 breast breast NN 10_1101-2020_01_28_923532 265 72 cancer cancer NN 10_1101-2020_01_28_923532 265 73 and and CC 10_1101-2020_01_28_923532 265 74 ( ( -LRB- 10_1101-2020_01_28_923532 265 75 B b NN 10_1101-2020_01_28_923532 265 76 ) ) -RRB- 10_1101-2020_01_28_923532 265 77 brain brain NN 10_1101-2020_01_28_923532 265 78 cancer cancer NN 10_1101-2020_01_28_923532 265 79 . . . 10_1101-2020_01_28_923532 266 1 These these DT 10_1101-2020_01_28_923532 266 2 data datum NNS 10_1101-2020_01_28_923532 266 3 sets set NNS 10_1101-2020_01_28_923532 266 4 were be VBD 10_1101-2020_01_28_923532 266 5 selected select VBN 10_1101-2020_01_28_923532 266 6 due due JJ 10_1101-2020_01_28_923532 266 7 to to IN 10_1101-2020_01_28_923532 266 8 their -PRON- PRP$ 10_1101-2020_01_28_923532 266 9 relatively relatively RB 10_1101-2020_01_28_923532 266 10 small small JJ 10_1101-2020_01_28_923532 266 11 cohort cohort NN 10_1101-2020_01_28_923532 266 12 target target NN 10_1101-2020_01_28_923532 266 13 set set NN 10_1101-2020_01_28_923532 266 14 sizes size NNS 10_1101-2020_01_28_923532 266 15 , , , 10_1101-2020_01_28_923532 266 16 permitting permit VBG 10_1101-2020_01_28_923532 266 17 their -PRON- PRP$ 10_1101-2020_01_28_923532 266 18 visualization visualization NN 10_1101-2020_01_28_923532 266 19 . . . 10_1101-2020_01_28_923532 267 1 ( ( -LRB- 10_1101-2020_01_28_923532 267 2 C C NNP 10_1101-2020_01_28_923532 267 3 - - HYPH 10_1101-2020_01_28_923532 267 4 F F NNP 10_1101-2020_01_28_923532 267 5 ) ) -RRB- 10_1101-2020_01_28_923532 267 6 CircOs CircOs : 10_1101-2020_01_28_923532 267 7 plots plot NNS 10_1101-2020_01_28_923532 267 8 of of IN 10_1101-2020_01_28_923532 267 9 the the DT 10_1101-2020_01_28_923532 267 10 genes gene NNS 10_1101-2020_01_28_923532 267 11 occurring occur VBG 10_1101-2020_01_28_923532 267 12 most most RBS 10_1101-2020_01_28_923532 267 13 frequently frequently RB 10_1101-2020_01_28_923532 267 14 in in IN 10_1101-2020_01_28_923532 267 15 optimal optimal JJ 10_1101-2020_01_28_923532 267 16 CTS CTS NNP 10_1101-2020_01_28_923532 267 17 solutions solution NNS 10_1101-2020_01_28_923532 267 18 ( ( -LRB- 10_1101-2020_01_28_923532 267 19 length length NN 10_1101-2020_01_28_923532 267 20 of of IN 10_1101-2020_01_28_923532 267 21 arc arc NN 10_1101-2020_01_28_923532 267 22 along along IN 10_1101-2020_01_28_923532 267 23 the the DT 10_1101-2020_01_28_923532 267 24 circumference circumference NN 10_1101-2020_01_28_923532 267 25 ) ) -RRB- 10_1101-2020_01_28_923532 267 26 and and CC 10_1101-2020_01_28_923532 267 27 their -PRON- PRP$ 10_1101-2020_01_28_923532 267 28 pairwise pairwise NN 10_1101-2020_01_28_923532 267 29 co co NN 10_1101-2020_01_28_923532 267 30 - - NN 10_1101-2020_01_28_923532 267 31 occurrence occurrence NN 10_1101-2020_01_28_923532 267 32 ( ( -LRB- 10_1101-2020_01_28_923532 267 33 thickness thickness NN 10_1101-2020_01_28_923532 267 34 of of IN 10_1101-2020_01_28_923532 267 35 the the DT 10_1101-2020_01_28_923532 267 36 connecting connect VBG 10_1101-2020_01_28_923532 267 37 edge edge NN 10_1101-2020_01_28_923532 267 38 ) ) -RRB- 10_1101-2020_01_28_923532 267 39 for for IN 10_1101-2020_01_28_923532 267 40 the the DT 10_1101-2020_01_28_923532 267 41 four four CD 10_1101-2020_01_28_923532 267 42 main main JJ 10_1101-2020_01_28_923532 267 43 cancer cancer NN 10_1101-2020_01_28_923532 267 44 types type NNS 10_1101-2020_01_28_923532 267 45 , , , 10_1101-2020_01_28_923532 267 46 in in IN 10_1101-2020_01_28_923532 267 47 our -PRON- PRP$ 10_1101-2020_01_28_923532 267 48 original original JJ 10_1101-2020_01_28_923532 267 49 target target NN 10_1101-2020_01_28_923532 267 50 space space NN 10_1101-2020_01_28_923532 267 51 of of IN 10_1101-2020_01_28_923532 267 52 1269 1269 CD 10_1101-2020_01_28_923532 267 53 encoding encode VBG 10_1101-2020_01_28_923532 267 54 cell cell NN 10_1101-2020_01_28_923532 267 55 - - HYPH 10_1101-2020_01_28_923532 267 56 surface surface NN 10_1101-2020_01_28_923532 267 57 receptors receptor NNS 10_1101-2020_01_28_923532 267 58 . . . 10_1101-2020_01_28_923532 268 1 For for IN 10_1101-2020_01_28_923532 268 2 each each DT 10_1101-2020_01_28_923532 268 3 data data NN 10_1101-2020_01_28_923532 268 4 set set NN 10_1101-2020_01_28_923532 268 5 , , , 10_1101-2020_01_28_923532 268 6 we -PRON- PRP 10_1101-2020_01_28_923532 268 7 sampled sample VBD 10_1101-2020_01_28_923532 268 8 up up RP 10_1101-2020_01_28_923532 268 9 to to TO 10_1101-2020_01_28_923532 268 10 50 50 CD 10_1101-2020_01_28_923532 268 11 optimal optimal JJ 10_1101-2020_01_28_923532 268 12 CTS CTS NNP 10_1101-2020_01_28_923532 268 13 solutions solution NNS 10_1101-2020_01_28_923532 268 14 . . . 10_1101-2020_01_28_923532 269 1 Network network NN 10_1101-2020_01_28_923532 269 2 representations representation NNS 10_1101-2020_01_28_923532 269 3 of of IN 10_1101-2020_01_28_923532 269 4 the the DT 10_1101-2020_01_28_923532 269 5 12 12 CD 10_1101-2020_01_28_923532 269 6 most most RBS 10_1101-2020_01_28_923532 269 7 common common JJ 10_1101-2020_01_28_923532 269 8 target target NN 10_1101-2020_01_28_923532 269 9 genes gene NNS 10_1101-2020_01_28_923532 269 10 out out IN 10_1101-2020_01_28_923532 269 11 of of IN 10_1101-2020_01_28_923532 269 12 1269 1269 CD 10_1101-2020_01_28_923532 269 13 encoding encode VBG 10_1101-2020_01_28_923532 269 14 cell cell NN 10_1101-2020_01_28_923532 269 15 - - HYPH 10_1101-2020_01_28_923532 269 16 surface surface NN 10_1101-2020_01_28_923532 269 17 receptors receptor NNS 10_1101-2020_01_28_923532 269 18 ( ( -LRB- 10_1101-2020_01_28_923532 269 19 with with IN 10_1101-2020_01_28_923532 269 20 greater great JJR 10_1101-2020_01_28_923532 269 21 than than IN 10_1101-2020_01_28_923532 269 22 5 5 CD 10_1101-2020_01_28_923532 269 23 % % NN 10_1101-2020_01_28_923532 269 24 frequency frequency NN 10_1101-2020_01_28_923532 269 25 of of IN 10_1101-2020_01_28_923532 269 26 occurrence occurrence NN 10_1101-2020_01_28_923532 269 27 ) ) -RRB- 10_1101-2020_01_28_923532 269 28 are be VBP 10_1101-2020_01_28_923532 269 29 represented represent VBN 10_1101-2020_01_28_923532 269 30 in in IN 10_1101-2020_01_28_923532 269 31 a a DT 10_1101-2020_01_28_923532 269 32 cancer cancer NN 10_1101-2020_01_28_923532 269 33 specific specific JJ 10_1101-2020_01_28_923532 269 34 manner manner NN 10_1101-2020_01_28_923532 269 35 for for IN 10_1101-2020_01_28_923532 269 36 ( ( -LRB- 10_1101-2020_01_28_923532 269 37 C C NNP 10_1101-2020_01_28_923532 269 38 ) ) -RRB- 10_1101-2020_01_28_923532 269 39 brain brain NN 10_1101-2020_01_28_923532 269 40 cancer cancer NN 10_1101-2020_01_28_923532 269 41 , , , 10_1101-2020_01_28_923532 269 42 ( ( -LRB- 10_1101-2020_01_28_923532 269 43 D d NN 10_1101-2020_01_28_923532 269 44 ) ) -RRB- 10_1101-2020_01_28_923532 269 45 head head NN 10_1101-2020_01_28_923532 269 46 and and CC 10_1101-2020_01_28_923532 269 47 neck neck NN 10_1101-2020_01_28_923532 269 48 cancer cancer NN 10_1101-2020_01_28_923532 269 49 , , , 10_1101-2020_01_28_923532 269 50 ( ( -LRB- 10_1101-2020_01_28_923532 269 51 only only RB 10_1101-2020_01_28_923532 269 52 seven seven CD 10_1101-2020_01_28_923532 269 53 genes gene NNS 10_1101-2020_01_28_923532 269 54 have have VBP 10_1101-2020_01_28_923532 269 55 a a DT 10_1101-2020_01_28_923532 269 56 frequency frequency NN 10_1101-2020_01_28_923532 269 57 of of IN 10_1101-2020_01_28_923532 269 58 5 5 CD 10_1101-2020_01_28_923532 269 59 % % NN 10_1101-2020_01_28_923532 269 60 or or CC 10_1101-2020_01_28_923532 269 61 more more JJR 10_1101-2020_01_28_923532 269 62 across across IN 10_1101-2020_01_28_923532 269 63 optimal optimal JJ 10_1101-2020_01_28_923532 269 64 105 105 CD 10_1101-2020_01_28_923532 269 65 and and CC 10_1101-2020_01_28_923532 269 66 is be VBZ 10_1101-2020_01_28_923532 269 67 also also RB 10_1101-2020_01_28_923532 269 68 made make VBN 10_1101-2020_01_28_923532 269 69 available available JJ 10_1101-2020_01_28_923532 269 70 for for IN 10_1101-2020_01_28_923532 269 71 use use NN 10_1101-2020_01_28_923532 269 72 under under IN 10_1101-2020_01_28_923532 269 73 a a DT 10_1101-2020_01_28_923532 269 74 CC0 CC0 NNP 10_1101-2020_01_28_923532 269 75 license license NN 10_1101-2020_01_28_923532 269 76 . . . 10_1101-2020_01_28_923532 270 1 ( ( -LRB- 10_1101-2020_01_28_923532 270 2 which which WDT 10_1101-2020_01_28_923532 270 3 was be VBD 10_1101-2020_01_28_923532 270 4 not not RB 10_1101-2020_01_28_923532 270 5 certified certify VBN 10_1101-2020_01_28_923532 270 6 by by IN 10_1101-2020_01_28_923532 270 7 peer peer NN 10_1101-2020_01_28_923532 270 8 review review NN 10_1101-2020_01_28_923532 270 9 ) ) -RRB- 10_1101-2020_01_28_923532 270 10 is be VBZ 10_1101-2020_01_28_923532 270 11 the the DT 10_1101-2020_01_28_923532 270 12 author author NN 10_1101-2020_01_28_923532 270 13 / / SYM 10_1101-2020_01_28_923532 270 14 funder funder NN 10_1101-2020_01_28_923532 270 15 . . . 10_1101-2020_01_28_923532 271 1 This this DT 10_1101-2020_01_28_923532 271 2 article article NN 10_1101-2020_01_28_923532 271 3 is be VBZ 10_1101-2020_01_28_923532 271 4 a a DT 10_1101-2020_01_28_923532 271 5 US US NNP 10_1101-2020_01_28_923532 271 6 Government Government NNP 10_1101-2020_01_28_923532 271 7 work work NN 10_1101-2020_01_28_923532 271 8 . . . 10_1101-2020_01_28_923532 272 1 It -PRON- PRP 10_1101-2020_01_28_923532 272 2 is be VBZ 10_1101-2020_01_28_923532 272 3 not not RB 10_1101-2020_01_28_923532 272 4 subject subject JJ 10_1101-2020_01_28_923532 272 5 to to IN 10_1101-2020_01_28_923532 272 6 copyright copyright NN 10_1101-2020_01_28_923532 272 7 under under IN 10_1101-2020_01_28_923532 272 8 17 17 CD 10_1101-2020_01_28_923532 272 9 USC usc NN 10_1101-2020_01_28_923532 272 10 The the DT 10_1101-2020_01_28_923532 272 11 copyright copyright NN 10_1101-2020_01_28_923532 272 12 holder holder NN 10_1101-2020_01_28_923532 272 13 for for IN 10_1101-2020_01_28_923532 272 14 this this DT 10_1101-2020_01_28_923532 272 15 preprintthis preprintthis NN 10_1101-2020_01_28_923532 272 16 version version NN 10_1101-2020_01_28_923532 272 17 posted post VBD 10_1101-2020_01_28_923532 272 18 February February NNP 10_1101-2020_01_28_923532 272 19 12 12 CD 10_1101-2020_01_28_923532 272 20 , , , 10_1101-2020_01_28_923532 272 21 2021 2021 CD 10_1101-2020_01_28_923532 272 22 . . . 10_1101-2020_01_28_923532 272 23 ; ; : 10_1101-2020_01_28_923532 272 24 https://doi.org/10.1101/2020.01.28.923532doi https://doi.org/10.1101/2020.01.28.923532doi ADD 10_1101-2020_01_28_923532 272 25 : : : 10_1101-2020_01_28_923532 272 26 bioRxiv biorxiv VB 10_1101-2020_01_28_923532 272 27 preprint preprint NN 10_1101-2020_01_28_923532 272 28 https://doi.org/10.1101/2020.01.28.923532 https://doi.org/10.1101/2020.01.28.923532 PRP 10_1101-2020_01_28_923532 272 29 23 23 CD 10_1101-2020_01_28_923532 272 30 solutions solution NNS 10_1101-2020_01_28_923532 272 31 ) ) -RRB- 10_1101-2020_01_28_923532 272 32 , , , 10_1101-2020_01_28_923532 272 33 ( ( -LRB- 10_1101-2020_01_28_923532 272 34 E e NN 10_1101-2020_01_28_923532 272 35 ) ) -RRB- 10_1101-2020_01_28_923532 272 36 melanoma melanoma NN 10_1101-2020_01_28_923532 272 37 , , , 10_1101-2020_01_28_923532 272 38 and and CC 10_1101-2020_01_28_923532 272 39 ( ( -LRB- 10_1101-2020_01_28_923532 272 40 F f NN 10_1101-2020_01_28_923532 272 41 ) ) -RRB- 10_1101-2020_01_28_923532 272 42 lung lung NN 10_1101-2020_01_28_923532 272 43 cancer cancer NN 10_1101-2020_01_28_923532 272 44 . . . 10_1101-2020_01_28_923532 273 1 Genes gene NNS 10_1101-2020_01_28_923532 273 2 and and CC 10_1101-2020_01_28_923532 273 3 connections connection NNS 10_1101-2020_01_28_923532 273 4 have have VBP 10_1101-2020_01_28_923532 273 5 distinct distinct JJ 10_1101-2020_01_28_923532 273 6 colors color NNS 10_1101-2020_01_28_923532 273 7 for for IN 10_1101-2020_01_28_923532 273 8 improved improved JJ 10_1101-2020_01_28_923532 273 9 visibility visibility NN 10_1101-2020_01_28_923532 273 10 . . . 10_1101-2020_01_28_923532 274 1 Key Key NNP 10_1101-2020_01_28_923532 274 2 Targets Targets NNPS 10_1101-2020_01_28_923532 274 3 Composing Composing NNP 10_1101-2020_01_28_923532 274 4 Optimal Optimal NNP 10_1101-2020_01_28_923532 274 5 Solutions Solutions NNPS 10_1101-2020_01_28_923532 274 6 Across across IN 10_1101-2020_01_28_923532 274 7 the the DT 10_1101-2020_01_28_923532 274 8 Space Space NNP 10_1101-2020_01_28_923532 274 9 of of IN 10_1101-2020_01_28_923532 274 10 1269 1269 CD 10_1101-2020_01_28_923532 274 11 membrane membrane NN 10_1101-2020_01_28_923532 274 12 receptors receptor NNS 10_1101-2020_01_28_923532 274 13 To to TO 10_1101-2020_01_28_923532 274 14 identify identify VB 10_1101-2020_01_28_923532 274 15 the the DT 10_1101-2020_01_28_923532 274 16 genes gene NNS 10_1101-2020_01_28_923532 274 17 that that WDT 10_1101-2020_01_28_923532 274 18 occur occur VBP 10_1101-2020_01_28_923532 274 19 most most RBS 10_1101-2020_01_28_923532 274 20 often often RB 10_1101-2020_01_28_923532 274 21 in in IN 10_1101-2020_01_28_923532 274 22 optimal optimal JJ 10_1101-2020_01_28_923532 274 23 solutions solution NNS 10_1101-2020_01_28_923532 274 24 for for IN 10_1101-2020_01_28_923532 274 25 our -PRON- PRP$ 10_1101-2020_01_28_923532 274 26 baseline baseline JJ 10_1101-2020_01_28_923532 274 27 settings setting NNS 10_1101-2020_01_28_923532 274 28 , , , 10_1101-2020_01_28_923532 274 29 since since IN 10_1101-2020_01_28_923532 274 30 there there EX 10_1101-2020_01_28_923532 274 31 may may MD 10_1101-2020_01_28_923532 274 32 be be VB 10_1101-2020_01_28_923532 274 33 multiple multiple JJ 10_1101-2020_01_28_923532 274 34 distinct distinct JJ 10_1101-2020_01_28_923532 274 35 optimal optimal JJ 10_1101-2020_01_28_923532 274 36 solutions solution NNS 10_1101-2020_01_28_923532 274 37 composed compose VBN 10_1101-2020_01_28_923532 274 38 of of IN 10_1101-2020_01_28_923532 274 39 different different JJ 10_1101-2020_01_28_923532 274 40 target target NN 10_1101-2020_01_28_923532 274 41 genes gene NNS 10_1101-2020_01_28_923532 274 42 , , , 10_1101-2020_01_28_923532 274 43 we -PRON- PRP 10_1101-2020_01_28_923532 274 44 sampled sample VBD 10_1101-2020_01_28_923532 274 45 up up RP 10_1101-2020_01_28_923532 274 46 to to TO 10_1101-2020_01_28_923532 274 47 50 50 CD 10_1101-2020_01_28_923532 274 48 optimal optimal JJ 10_1101-2020_01_28_923532 274 49 solutions solution NNS 10_1101-2020_01_28_923532 274 50 for for IN 10_1101-2020_01_28_923532 274 51 each each DT 10_1101-2020_01_28_923532 274 52 optimization optimization NN 10_1101-2020_01_28_923532 274 53 instance instance NN 10_1101-2020_01_28_923532 274 54 solved solve VBD 10_1101-2020_01_28_923532 274 55 and and CC 10_1101-2020_01_28_923532 274 56 recorded record VBD 10_1101-2020_01_28_923532 274 57 how how WRB 10_1101-2020_01_28_923532 274 58 often often RB 10_1101-2020_01_28_923532 274 59 each each DT 10_1101-2020_01_28_923532 274 60 gene gene NN 10_1101-2020_01_28_923532 274 61 occurs occur VBZ 10_1101-2020_01_28_923532 274 62 and and CC 10_1101-2020_01_28_923532 274 63 how how WRB 10_1101-2020_01_28_923532 274 64 often often RB 10_1101-2020_01_28_923532 274 65 each each DT 10_1101-2020_01_28_923532 274 66 pair pair NN 10_1101-2020_01_28_923532 274 67 of of IN 10_1101-2020_01_28_923532 274 68 genes gene NNS 10_1101-2020_01_28_923532 274 69 occur occur VBP 10_1101-2020_01_28_923532 274 70 together together RB 10_1101-2020_01_28_923532 274 71 ( ( -LRB- 10_1101-2020_01_28_923532 274 72 Methods Methods NNP 10_1101-2020_01_28_923532 274 73 ) ) -RRB- 10_1101-2020_01_28_923532 274 74 . . . 10_1101-2020_01_28_923532 275 1 We -PRON- PRP 10_1101-2020_01_28_923532 275 2 analyzed analyze VBD 10_1101-2020_01_28_923532 275 3 and and CC 10_1101-2020_01_28_923532 275 4 visualized visualize VBD 10_1101-2020_01_28_923532 275 5 these these DT 10_1101-2020_01_28_923532 275 6 gene gene NN 10_1101-2020_01_28_923532 275 7 ( ( -LRB- 10_1101-2020_01_28_923532 275 8 co-)occurrences co-)occurrence NNS 10_1101-2020_01_28_923532 275 9 in in IN 10_1101-2020_01_28_923532 275 10 three three CD 10_1101-2020_01_28_923532 275 11 ways way NNS 10_1101-2020_01_28_923532 275 12 . . . 10_1101-2020_01_28_923532 276 1 First first RB 10_1101-2020_01_28_923532 276 2 , , , 10_1101-2020_01_28_923532 276 3 we -PRON- PRP 10_1101-2020_01_28_923532 276 4 constructed construct VBD 10_1101-2020_01_28_923532 276 5 co co NN 10_1101-2020_01_28_923532 276 6 - - NN 10_1101-2020_01_28_923532 276 7 occurrence occurrence JJ 10_1101-2020_01_28_923532 276 8 circus circus NN 10_1101-2020_01_28_923532 276 9 plots plot NNS 10_1101-2020_01_28_923532 276 10 in in IN 10_1101-2020_01_28_923532 276 11 which which WDT 10_1101-2020_01_28_923532 276 12 arcs arc NNS 10_1101-2020_01_28_923532 276 13 around around IN 10_1101-2020_01_28_923532 276 14 the the DT 10_1101-2020_01_28_923532 276 15 circle circle NN 10_1101-2020_01_28_923532 276 16 represent represent VBP 10_1101-2020_01_28_923532 276 17 frequently frequently RB 10_1101-2020_01_28_923532 276 18 occurring occur VBG 10_1101-2020_01_28_923532 276 19 genes gene NNS 10_1101-2020_01_28_923532 276 20 and and CC 10_1101-2020_01_28_923532 276 21 edges edge VBZ 10_1101-2020_01_28_923532 276 22 connect connect VBP 10_1101-2020_01_28_923532 276 23 targets target NNS 10_1101-2020_01_28_923532 276 24 that that WDT 10_1101-2020_01_28_923532 276 25 frequently frequently RB 10_1101-2020_01_28_923532 276 26 co co VBP 10_1101-2020_01_28_923532 276 27 - - NN 10_1101-2020_01_28_923532 276 28 occur occur VB 10_1101-2020_01_28_923532 276 29 in in IN 10_1101-2020_01_28_923532 276 30 optimal optimal JJ 10_1101-2020_01_28_923532 276 31 CTS CTS NNP 10_1101-2020_01_28_923532 276 32 solutions solution NNS 10_1101-2020_01_28_923532 276 33 . . . 10_1101-2020_01_28_923532 277 1 Figure Figure NNP 10_1101-2020_01_28_923532 277 2 7C 7C NNP 10_1101-2020_01_28_923532 277 3 - - HYPH 10_1101-2020_01_28_923532 277 4 F F NNP 10_1101-2020_01_28_923532 277 5 shows show VBZ 10_1101-2020_01_28_923532 277 6 the the DT 10_1101-2020_01_28_923532 277 7 co co NN 10_1101-2020_01_28_923532 277 8 - - NN 10_1101-2020_01_28_923532 277 9 occurrence occurrence JJ 10_1101-2020_01_28_923532 277 10 visualizations visualization NNS 10_1101-2020_01_28_923532 277 11 for for IN 10_1101-2020_01_28_923532 277 12 optimal optimal JJ 10_1101-2020_01_28_923532 277 13 CTS CTS NNP 10_1101-2020_01_28_923532 277 14 solutions solution NNS 10_1101-2020_01_28_923532 277 15 obtained obtain VBN 10_1101-2020_01_28_923532 277 16 with with IN 10_1101-2020_01_28_923532 277 17 the the DT 10_1101-2020_01_28_923532 277 18 original original JJ 10_1101-2020_01_28_923532 277 19 , , , 10_1101-2020_01_28_923532 277 20 unfiltered unfiltered JJ 10_1101-2020_01_28_923532 277 21 target target NN 10_1101-2020_01_28_923532 277 22 space space NN 10_1101-2020_01_28_923532 277 23 of of IN 10_1101-2020_01_28_923532 277 24 1269 1269 CD 10_1101-2020_01_28_923532 277 25 genes gene NNS 10_1101-2020_01_28_923532 277 26 and and CC 10_1101-2020_01_28_923532 277 27 in in IN 10_1101-2020_01_28_923532 277 28 baseline baseline JJ 10_1101-2020_01_28_923532 277 29 parameter parameter NN 10_1101-2020_01_28_923532 277 30 settings setting NNS 10_1101-2020_01_28_923532 277 31 . . . 10_1101-2020_01_28_923532 278 1 The the DT 10_1101-2020_01_28_923532 278 2 genes gene NNS 10_1101-2020_01_28_923532 278 3 frequently frequently RB 10_1101-2020_01_28_923532 278 4 occurring occur VBG 10_1101-2020_01_28_923532 278 5 in in IN 10_1101-2020_01_28_923532 278 6 optimal optimal JJ 10_1101-2020_01_28_923532 278 7 solutions solution NNS 10_1101-2020_01_28_923532 278 8 are be VBP 10_1101-2020_01_28_923532 278 9 quite quite RB 10_1101-2020_01_28_923532 278 10 specific specific JJ 10_1101-2020_01_28_923532 278 11 and and CC 10_1101-2020_01_28_923532 278 12 distinct distinct JJ 10_1101-2020_01_28_923532 278 13 between between IN 10_1101-2020_01_28_923532 278 14 different different JJ 10_1101-2020_01_28_923532 278 15 cancer cancer NN 10_1101-2020_01_28_923532 278 16 types type NNS 10_1101-2020_01_28_923532 278 17 . . . 10_1101-2020_01_28_923532 279 1 In in IN 10_1101-2020_01_28_923532 279 2 melanoma melanoma NNP 10_1101-2020_01_28_923532 279 3 , , , 10_1101-2020_01_28_923532 279 4 the the DT 10_1101-2020_01_28_923532 279 5 edges edge NNS 10_1101-2020_01_28_923532 279 6 form form VBP 10_1101-2020_01_28_923532 279 7 a a DT 10_1101-2020_01_28_923532 279 8 clique clique NN 10_1101-2020_01_28_923532 279 9 - - HYPH 10_1101-2020_01_28_923532 279 10 like like JJ 10_1101-2020_01_28_923532 279 11 network network NN 10_1101-2020_01_28_923532 279 12 because because IN 10_1101-2020_01_28_923532 279 13 virtually virtually RB 10_1101-2020_01_28_923532 279 14 all all DT 10_1101-2020_01_28_923532 279 15 optimal optimal JJ 10_1101-2020_01_28_923532 279 16 solutions solution NNS 10_1101-2020_01_28_923532 279 17 include include VBP 10_1101-2020_01_28_923532 279 18 the the DT 10_1101-2020_01_28_923532 279 19 same same JJ 10_1101-2020_01_28_923532 279 20 clique clique NN 10_1101-2020_01_28_923532 279 21 of of IN 10_1101-2020_01_28_923532 279 22 12 12 CD 10_1101-2020_01_28_923532 279 23 genes gene NNS 10_1101-2020_01_28_923532 279 24 ( ( -LRB- 10_1101-2020_01_28_923532 279 25 Figure figure NN 10_1101-2020_01_28_923532 279 26 7E 7e NN 10_1101-2020_01_28_923532 279 27 ) ) -RRB- 10_1101-2020_01_28_923532 279 28 . . . 10_1101-2020_01_28_923532 280 1 The the DT 10_1101-2020_01_28_923532 280 2 head head NN 10_1101-2020_01_28_923532 280 3 and and CC 10_1101-2020_01_28_923532 280 4 neck neck NN 10_1101-2020_01_28_923532 280 5 cancer cancer NN 10_1101-2020_01_28_923532 280 6 data datum NNS 10_1101-2020_01_28_923532 280 7 set set NN 10_1101-2020_01_28_923532 280 8 has have VBZ 10_1101-2020_01_28_923532 280 9 only only RB 10_1101-2020_01_28_923532 280 10 one one CD 10_1101-2020_01_28_923532 280 11 commonly commonly RB 10_1101-2020_01_28_923532 280 12 co co JJ 10_1101-2020_01_28_923532 280 13 - - JJ 10_1101-2020_01_28_923532 280 14 occurring occurring JJ 10_1101-2020_01_28_923532 280 15 pair pair NN 10_1101-2020_01_28_923532 280 16 { { -LRB- 10_1101-2020_01_28_923532 280 17 GPR87 GPR87 NNP 10_1101-2020_01_28_923532 280 18 , , , 10_1101-2020_01_28_923532 280 19 CXADR CXADR NNP 10_1101-2020_01_28_923532 280 20 } } -RRB- 10_1101-2020_01_28_923532 280 21 ( ( -LRB- 10_1101-2020_01_28_923532 280 22 Figure figure NN 10_1101-2020_01_28_923532 280 23 7D 7d NN 10_1101-2020_01_28_923532 280 24 ) ) -RRB- 10_1101-2020_01_28_923532 280 25 . . . 10_1101-2020_01_28_923532 281 1 Of of IN 10_1101-2020_01_28_923532 281 2 the the DT 10_1101-2020_01_28_923532 281 3 cancer cancer NN 10_1101-2020_01_28_923532 281 4 types type NNS 10_1101-2020_01_28_923532 281 5 not not RB 10_1101-2020_01_28_923532 281 6 depicted depict VBN 10_1101-2020_01_28_923532 281 7 in in IN 10_1101-2020_01_28_923532 281 8 Figure Figure NNP 10_1101-2020_01_28_923532 281 9 7 7 CD 10_1101-2020_01_28_923532 281 10 , , , 10_1101-2020_01_28_923532 281 11 the the DT 10_1101-2020_01_28_923532 281 12 breast breast NN 10_1101-2020_01_28_923532 281 13 cancer cancer NN 10_1101-2020_01_28_923532 281 14 data datum NNS 10_1101-2020_01_28_923532 281 15 set set NN 10_1101-2020_01_28_923532 281 16 has have VBZ 10_1101-2020_01_28_923532 281 17 a a DT 10_1101-2020_01_28_923532 281 18 commonly commonly RB 10_1101-2020_01_28_923532 281 19 co co JJ 10_1101-2020_01_28_923532 281 20 - - JJ 10_1101-2020_01_28_923532 281 21 occurring occurring JJ 10_1101-2020_01_28_923532 281 22 set set NN 10_1101-2020_01_28_923532 281 23 of of IN 10_1101-2020_01_28_923532 281 24 size size NN 10_1101-2020_01_28_923532 281 25 4 4 CD 10_1101-2020_01_28_923532 281 26 , , , 10_1101-2020_01_28_923532 281 27 { { -LRB- 10_1101-2020_01_28_923532 281 28 CLDN4 CLDN4 NNP 10_1101-2020_01_28_923532 281 29 , , , 10_1101-2020_01_28_923532 281 30 INSR INSR NNP 10_1101-2020_01_28_923532 281 31 , , , 10_1101-2020_01_28_923532 281 32 P2RY8 P2RY8 NNP 10_1101-2020_01_28_923532 281 33 , , , 10_1101-2020_01_28_923532 281 34 SORL SORL NNP 10_1101-2020_01_28_923532 281 35 } } -RRB- 10_1101-2020_01_28_923532 281 36 , , , 10_1101-2020_01_28_923532 281 37 and and CC 10_1101-2020_01_28_923532 281 38 the the DT 10_1101-2020_01_28_923532 281 39 colorectal colorectal JJ 10_1101-2020_01_28_923532 281 40 cancer cancer NN 10_1101-2020_01_28_923532 281 41 data datum NNS 10_1101-2020_01_28_923532 281 42 set set NN 10_1101-2020_01_28_923532 281 43 has have VBZ 10_1101-2020_01_28_923532 281 44 a a DT 10_1101-2020_01_28_923532 281 45 different different JJ 10_1101-2020_01_28_923532 281 46 commonly commonly RB 10_1101-2020_01_28_923532 281 47 co co JJ 10_1101-2020_01_28_923532 281 48 - - JJ 10_1101-2020_01_28_923532 281 49 occurring occurring JJ 10_1101-2020_01_28_923532 281 50 set set NN 10_1101-2020_01_28_923532 281 51 of of IN 10_1101-2020_01_28_923532 281 52 size size NN 10_1101-2020_01_28_923532 281 53 4 4 CD 10_1101-2020_01_28_923532 281 54 , , , 10_1101-2020_01_28_923532 281 55 { { -LRB- 10_1101-2020_01_28_923532 281 56 GABRE GABRE NNP 10_1101-2020_01_28_923532 281 57 , , , 10_1101-2020_01_28_923532 281 58 GPRR GPRR NNP 10_1101-2020_01_28_923532 281 59 , , , 10_1101-2020_01_28_923532 281 60 LGR5 LGR5 NNP 10_1101-2020_01_28_923532 281 61 , , , 10_1101-2020_01_28_923532 281 62 PTPRJ PTPRJ NNP 10_1101-2020_01_28_923532 281 63 } } -RRB- 10_1101-2020_01_28_923532 281 64 ( ( -LRB- 10_1101-2020_01_28_923532 281 65 data datum NNS 10_1101-2020_01_28_923532 281 66 not not RB 10_1101-2020_01_28_923532 281 67 shown show VBN 10_1101-2020_01_28_923532 281 68 ) ) -RRB- 10_1101-2020_01_28_923532 281 69 . . . 10_1101-2020_01_28_923532 282 1 We -PRON- PRP 10_1101-2020_01_28_923532 282 2 next next RB 10_1101-2020_01_28_923532 282 3 tabulated tabulate VBN 10_1101-2020_01_28_923532 282 4 sums sum NNS 10_1101-2020_01_28_923532 282 5 of of IN 10_1101-2020_01_28_923532 282 6 how how WRB 10_1101-2020_01_28_923532 282 7 often often RB 10_1101-2020_01_28_923532 282 8 each each DT 10_1101-2020_01_28_923532 282 9 gene gene NN 10_1101-2020_01_28_923532 282 10 occurred occur VBD 10_1101-2020_01_28_923532 282 11 in in IN 10_1101-2020_01_28_923532 282 12 optimal optimal JJ 10_1101-2020_01_28_923532 282 13 solutions solution NNS 10_1101-2020_01_28_923532 282 14 for for IN 10_1101-2020_01_28_923532 282 15 all all DT 10_1101-2020_01_28_923532 282 16 nine nine CD 10_1101-2020_01_28_923532 282 17 data data NN 10_1101-2020_01_28_923532 282 18 sets set NNS 10_1101-2020_01_28_923532 282 19 ( ( -LRB- 10_1101-2020_01_28_923532 282 20 Supplementary Supplementary NNP 10_1101-2020_01_28_923532 282 21 Materials Materials NNP 10_1101-2020_01_28_923532 282 22 12 12 CD 10_1101-2020_01_28_923532 282 23 , , , 10_1101-2020_01_28_923532 282 24 Tables Tables NNPS 10_1101-2020_01_28_923532 282 25 S4 S4 NNP 10_1101-2020_01_28_923532 282 26 , , , 10_1101-2020_01_28_923532 282 27 S5 s5 NN 10_1101-2020_01_28_923532 282 28 and and CC 10_1101-2020_01_28_923532 282 29 S6 S6 NNP 10_1101-2020_01_28_923532 282 30 ) ) -RRB- 10_1101-2020_01_28_923532 282 31 , , , 10_1101-2020_01_28_923532 282 32 obtained obtain VBN 10_1101-2020_01_28_923532 282 33 when when WRB 10_1101-2020_01_28_923532 282 34 solving solve VBG 10_1101-2020_01_28_923532 282 35 for for IN 10_1101-2020_01_28_923532 282 36 either either DT 10_1101-2020_01_28_923532 282 37 58 58 CD 10_1101-2020_01_28_923532 282 38 gene gene NN 10_1101-2020_01_28_923532 282 39 targets target NNS 10_1101-2020_01_28_923532 282 40 or or CC 10_1101-2020_01_28_923532 282 41 1269 1269 CD 10_1101-2020_01_28_923532 282 42 gene gene NN 10_1101-2020_01_28_923532 282 43 targets target NNS 10_1101-2020_01_28_923532 282 44 . . . 10_1101-2020_01_28_923532 283 1 Strikingly strikingly RB 10_1101-2020_01_28_923532 283 2 , , , 10_1101-2020_01_28_923532 283 3 one one CD 10_1101-2020_01_28_923532 283 4 gene gene NN 10_1101-2020_01_28_923532 283 5 , , , 10_1101-2020_01_28_923532 283 6 PTPRZ1 ptprz1 NN 10_1101-2020_01_28_923532 283 7 ( ( -LRB- 10_1101-2020_01_28_923532 283 8 protein protein NN 10_1101-2020_01_28_923532 283 9 tyrosine tyrosine NNP 10_1101-2020_01_28_923532 283 10 phosphatase phosphatase NNP 10_1101-2020_01_28_923532 283 11 receptor receptor NNP 10_1101-2020_01_28_923532 283 12 zeta zeta NNP 10_1101-2020_01_28_923532 283 13 1 1 CD 10_1101-2020_01_28_923532 283 14 ) ) -RRB- 10_1101-2020_01_28_923532 283 15 , , , 10_1101-2020_01_28_923532 283 16 appears appear VBZ 10_1101-2020_01_28_923532 283 17 far far RB 10_1101-2020_01_28_923532 283 18 more more RBR 10_1101-2020_01_28_923532 283 19 frequently frequently RB 10_1101-2020_01_28_923532 283 20 than than IN 10_1101-2020_01_28_923532 283 21 others other NNS 10_1101-2020_01_28_923532 283 22 , , , 10_1101-2020_01_28_923532 283 23 especially especially RB 10_1101-2020_01_28_923532 283 24 in in IN 10_1101-2020_01_28_923532 283 25 three three CD 10_1101-2020_01_28_923532 283 26 brain brain NN 10_1101-2020_01_28_923532 283 27 cancer cancer NN 10_1101-2020_01_28_923532 283 28 data datum NNS 10_1101-2020_01_28_923532 283 29 sets set NNS 10_1101-2020_01_28_923532 283 30 ( ( -LRB- 10_1101-2020_01_28_923532 283 31 GSE70630 GSE70630 NNP 10_1101-2020_01_28_923532 283 32 , , , 10_1101-2020_01_28_923532 283 33 GSE89567 GSE89567 NNP 10_1101-2020_01_28_923532 283 34 , , , 10_1101-2020_01_28_923532 283 35 GSE102130 GSE102130 NNP 10_1101-2020_01_28_923532 283 36 , , , 10_1101-2020_01_28_923532 283 37 Supplementary Supplementary NNP 10_1101-2020_01_28_923532 283 38 Table Table NNP 10_1101-2020_01_28_923532 283 39 S6 S6 NNP 10_1101-2020_01_28_923532 283 40 ) ) -RRB- 10_1101-2020_01_28_923532 283 41 . . . 10_1101-2020_01_28_923532 284 1 PTPRZ1 PTPRZ1 NNP 10_1101-2020_01_28_923532 284 2 also also RB 10_1101-2020_01_28_923532 284 3 occurs occur VBZ 10_1101-2020_01_28_923532 284 4 commonly commonly RB 10_1101-2020_01_28_923532 284 5 in in IN 10_1101-2020_01_28_923532 284 6 optimal optimal JJ 10_1101-2020_01_28_923532 284 7 solutions solution NNS 10_1101-2020_01_28_923532 284 8 for for IN 10_1101-2020_01_28_923532 284 9 the the DT 10_1101-2020_01_28_923532 284 10 head head NN 10_1101-2020_01_28_923532 284 11 and and CC 10_1101-2020_01_28_923532 284 12 neck neck NN 10_1101-2020_01_28_923532 284 13 cancer cancer NN 10_1101-2020_01_28_923532 284 14 data datum NNS 10_1101-2020_01_28_923532 284 15 set set NN 10_1101-2020_01_28_923532 284 16 ( ( -LRB- 10_1101-2020_01_28_923532 284 17 Figure Figure NNP 10_1101-2020_01_28_923532 284 18 7D 7d NN 10_1101-2020_01_28_923532 284 19 ) ) -RRB- 10_1101-2020_01_28_923532 284 20 . . . 10_1101-2020_01_28_923532 285 1 The the DT 10_1101-2020_01_28_923532 285 2 brain brain NN 10_1101-2020_01_28_923532 285 3 cancer cancer NN 10_1101-2020_01_28_923532 285 4 finding find VBG 10_1101-2020_01_28_923532 285 5 coincides coincide NNS 10_1101-2020_01_28_923532 285 6 with with IN 10_1101-2020_01_28_923532 285 7 previous previous JJ 10_1101-2020_01_28_923532 285 8 reports report NNS 10_1101-2020_01_28_923532 285 9 that that IN 10_1101-2020_01_28_923532 285 10 PTPRZ1 ptprz1 NN 10_1101-2020_01_28_923532 285 11 is be VBZ 10_1101-2020_01_28_923532 285 12 overexpressed overexpresse VBN 10_1101-2020_01_28_923532 285 13 in in IN 10_1101-2020_01_28_923532 285 14 glioblastoma glioblastoma NNP 10_1101-2020_01_28_923532 285 15 ( ( -LRB- 10_1101-2020_01_28_923532 285 16 GBM)39,40 gbm)39,40 NN 10_1101-2020_01_28_923532 285 17 . . . 10_1101-2020_01_28_923532 286 1 PTPRZ1 PTPRZ1 NNP 10_1101-2020_01_28_923532 286 2 also also RB 10_1101-2020_01_28_923532 286 3 forms form VBZ 10_1101-2020_01_28_923532 286 4 a a DT 10_1101-2020_01_28_923532 286 5 fusion fusion NN 10_1101-2020_01_28_923532 286 6 with with IN 10_1101-2020_01_28_923532 286 7 the the DT 10_1101-2020_01_28_923532 286 8 nearby nearby JJ 10_1101-2020_01_28_923532 286 9 oncogene oncogene NN 10_1101-2020_01_28_923532 286 10 MET MET NNP 10_1101-2020_01_28_923532 286 11 in in IN 10_1101-2020_01_28_923532 286 12 some some DT 10_1101-2020_01_28_923532 286 13 brain brain NN 10_1101-2020_01_28_923532 286 14 tumors tumor NNS 10_1101-2020_01_28_923532 286 15 that that WDT 10_1101-2020_01_28_923532 286 16 have have VBP 10_1101-2020_01_28_923532 286 17 an an DT 10_1101-2020_01_28_923532 286 18 overexpression overexpression NN 10_1101-2020_01_28_923532 286 19 of of IN 10_1101-2020_01_28_923532 286 20 the the DT 10_1101-2020_01_28_923532 286 21 fused fuse VBN 10_1101-2020_01_28_923532 286 22 MET41 MET41 NNP 10_1101-2020_01_28_923532 286 23 . . . 10_1101-2020_01_28_923532 287 1 Notably notably RB 10_1101-2020_01_28_923532 287 2 , , , 10_1101-2020_01_28_923532 287 3 various various JJ 10_1101-2020_01_28_923532 287 4 cell cell NN 10_1101-2020_01_28_923532 287 5 line line NN 10_1101-2020_01_28_923532 287 6 studies study VBZ 10_1101-2020_01_28_923532 287 7 105 105 CD 10_1101-2020_01_28_923532 287 8 and and CC 10_1101-2020_01_28_923532 287 9 is be VBZ 10_1101-2020_01_28_923532 287 10 also also RB 10_1101-2020_01_28_923532 287 11 made make VBN 10_1101-2020_01_28_923532 287 12 available available JJ 10_1101-2020_01_28_923532 287 13 for for IN 10_1101-2020_01_28_923532 287 14 use use NN 10_1101-2020_01_28_923532 287 15 under under IN 10_1101-2020_01_28_923532 287 16 a a DT 10_1101-2020_01_28_923532 287 17 CC0 CC0 NNP 10_1101-2020_01_28_923532 287 18 license license NN 10_1101-2020_01_28_923532 287 19 . . . 10_1101-2020_01_28_923532 288 1 ( ( -LRB- 10_1101-2020_01_28_923532 288 2 which which WDT 10_1101-2020_01_28_923532 288 3 was be VBD 10_1101-2020_01_28_923532 288 4 not not RB 10_1101-2020_01_28_923532 288 5 certified certify VBN 10_1101-2020_01_28_923532 288 6 by by IN 10_1101-2020_01_28_923532 288 7 peer peer NN 10_1101-2020_01_28_923532 288 8 review review NN 10_1101-2020_01_28_923532 288 9 ) ) -RRB- 10_1101-2020_01_28_923532 288 10 is be VBZ 10_1101-2020_01_28_923532 288 11 the the DT 10_1101-2020_01_28_923532 288 12 author author NN 10_1101-2020_01_28_923532 288 13 / / SYM 10_1101-2020_01_28_923532 288 14 funder funder NN 10_1101-2020_01_28_923532 288 15 . . . 10_1101-2020_01_28_923532 289 1 This this DT 10_1101-2020_01_28_923532 289 2 article article NN 10_1101-2020_01_28_923532 289 3 is be VBZ 10_1101-2020_01_28_923532 289 4 a a DT 10_1101-2020_01_28_923532 289 5 US US NNP 10_1101-2020_01_28_923532 289 6 Government Government NNP 10_1101-2020_01_28_923532 289 7 work work NN 10_1101-2020_01_28_923532 289 8 . . . 10_1101-2020_01_28_923532 290 1 It -PRON- PRP 10_1101-2020_01_28_923532 290 2 is be VBZ 10_1101-2020_01_28_923532 290 3 not not RB 10_1101-2020_01_28_923532 290 4 subject subject JJ 10_1101-2020_01_28_923532 290 5 to to IN 10_1101-2020_01_28_923532 290 6 copyright copyright NN 10_1101-2020_01_28_923532 290 7 under under IN 10_1101-2020_01_28_923532 290 8 17 17 CD 10_1101-2020_01_28_923532 290 9 USC usc NN 10_1101-2020_01_28_923532 290 10 The the DT 10_1101-2020_01_28_923532 290 11 copyright copyright NN 10_1101-2020_01_28_923532 290 12 holder holder NN 10_1101-2020_01_28_923532 290 13 for for IN 10_1101-2020_01_28_923532 290 14 this this DT 10_1101-2020_01_28_923532 290 15 preprintthis preprintthis NN 10_1101-2020_01_28_923532 290 16 version version NN 10_1101-2020_01_28_923532 290 17 posted post VBD 10_1101-2020_01_28_923532 290 18 February February NNP 10_1101-2020_01_28_923532 290 19 12 12 CD 10_1101-2020_01_28_923532 290 20 , , , 10_1101-2020_01_28_923532 290 21 2021 2021 CD 10_1101-2020_01_28_923532 290 22 . . . 10_1101-2020_01_28_923532 290 23 ; ; : 10_1101-2020_01_28_923532 290 24 https://doi.org/10.1101/2020.01.28.923532doi https://doi.org/10.1101/2020.01.28.923532doi ADD 10_1101-2020_01_28_923532 290 25 : : : 10_1101-2020_01_28_923532 290 26 bioRxiv biorxiv VB 10_1101-2020_01_28_923532 290 27 preprint preprint NN 10_1101-2020_01_28_923532 290 28 https://doi.org/10.1101/2020.01.28.923532 https://doi.org/10.1101/2020.01.28.923532 UH 10_1101-2020_01_28_923532 290 29 24 24 CD 10_1101-2020_01_28_923532 290 30 and and CC 10_1101-2020_01_28_923532 290 31 mouse mouse NN 10_1101-2020_01_28_923532 290 32 studies study NNS 10_1101-2020_01_28_923532 290 33 have have VBP 10_1101-2020_01_28_923532 290 34 shown show VBN 10_1101-2020_01_28_923532 290 35 that that IN 10_1101-2020_01_28_923532 290 36 inhibiting inhibit VBG 10_1101-2020_01_28_923532 290 37 PTPRZ1 ptprz1 NN 10_1101-2020_01_28_923532 290 38 , , , 10_1101-2020_01_28_923532 290 39 for for IN 10_1101-2020_01_28_923532 290 40 example example NN 10_1101-2020_01_28_923532 290 41 by by IN 10_1101-2020_01_28_923532 290 42 shRNAs shRNAs NNP 10_1101-2020_01_28_923532 290 43 , , , 10_1101-2020_01_28_923532 290 44 can can MD 10_1101-2020_01_28_923532 290 45 slow slow VB 10_1101-2020_01_28_923532 290 46 glioblastoma glioblastoma NN 10_1101-2020_01_28_923532 290 47 tumor tumor NN 10_1101-2020_01_28_923532 290 48 growth growth NN 10_1101-2020_01_28_923532 290 49 and and CC 10_1101-2020_01_28_923532 290 50 migration42,43 migration42,43 NNP 10_1101-2020_01_28_923532 290 51 . . . 10_1101-2020_01_28_923532 291 1 There there EX 10_1101-2020_01_28_923532 291 2 have have VBP 10_1101-2020_01_28_923532 291 3 been be VBN 10_1101-2020_01_28_923532 291 4 some some DT 10_1101-2020_01_28_923532 291 5 attempts attempt NNS 10_1101-2020_01_28_923532 291 6 to to TO 10_1101-2020_01_28_923532 291 7 inhibit inhibit VB 10_1101-2020_01_28_923532 291 8 PTPRZ1 ptprz1 CC 10_1101-2020_01_28_923532 291 9 pharmacologically pharmacologically RB 10_1101-2020_01_28_923532 291 10 in in IN 10_1101-2020_01_28_923532 291 11 brain brain NN 10_1101-2020_01_28_923532 291 12 cancer cancer NN 10_1101-2020_01_28_923532 291 13 and and CC 10_1101-2020_01_28_923532 291 14 other other JJ 10_1101-2020_01_28_923532 291 15 brain brain NN 10_1101-2020_01_28_923532 291 16 disorders44,45 disorders44,45 NNP 10_1101-2020_01_28_923532 291 17 . . . 10_1101-2020_01_28_923532 292 1 In in IN 10_1101-2020_01_28_923532 292 2 the the DT 10_1101-2020_01_28_923532 292 3 four four CD 10_1101-2020_01_28_923532 292 4 brain brain NN 10_1101-2020_01_28_923532 292 5 cancer cancer NN 10_1101-2020_01_28_923532 292 6 data datum NNS 10_1101-2020_01_28_923532 292 7 sets set NNS 10_1101-2020_01_28_923532 292 8 , , , 10_1101-2020_01_28_923532 292 9 PTPRZ1 PTPRZ1 NNP 10_1101-2020_01_28_923532 292 10 is be VBZ 10_1101-2020_01_28_923532 292 11 expressed express VBN 10_1101-2020_01_28_923532 292 12 selectively selectively RB 10_1101-2020_01_28_923532 292 13 above above IN 10_1101-2020_01_28_923532 292 14 the the DT 10_1101-2020_01_28_923532 292 15 baseline baseline NN 10_1101-2020_01_28_923532 292 16 𝑟 𝑟 NNP 10_1101-2020_01_28_923532 292 17 = = SYM 10_1101-2020_01_28_923532 292 18 2.0 2.0 CD 10_1101-2020_01_28_923532 292 19 in in IN 10_1101-2020_01_28_923532 292 20 0.99 0.99 CD 10_1101-2020_01_28_923532 292 21 ( ( -LRB- 10_1101-2020_01_28_923532 292 22 GSE89567 GSE89567 NNP 10_1101-2020_01_28_923532 292 23 ) ) -RRB- 10_1101-2020_01_28_923532 292 24 , , , 10_1101-2020_01_28_923532 292 25 0.84 0.84 CD 10_1101-2020_01_28_923532 292 26 ( ( -LRB- 10_1101-2020_01_28_923532 292 27 GSE70630 GSE70630 NNP 10_1101-2020_01_28_923532 292 28 ) ) -RRB- 10_1101-2020_01_28_923532 292 29 , , , 10_1101-2020_01_28_923532 292 30 0.96 0.96 CD 10_1101-2020_01_28_923532 292 31 ( ( -LRB- 10_1101-2020_01_28_923532 292 32 GSE102130 GSE102130 NNP 10_1101-2020_01_28_923532 292 33 ) ) -RRB- 10_1101-2020_01_28_923532 292 34 and and CC 10_1101-2020_01_28_923532 292 35 0.27 0.27 CD 10_1101-2020_01_28_923532 292 36 ( ( -LRB- 10_1101-2020_01_28_923532 292 37 GSE84465 GSE84465 NNP 10_1101-2020_01_28_923532 292 38 ) ) -RRB- 10_1101-2020_01_28_923532 292 39 proportion proportion NN 10_1101-2020_01_28_923532 292 40 of of IN 10_1101-2020_01_28_923532 292 41 cells cell NNS 10_1101-2020_01_28_923532 292 42 in in IN 10_1101-2020_01_28_923532 292 43 each each DT 10_1101-2020_01_28_923532 292 44 cohort cohort NN 10_1101-2020_01_28_923532 292 45 . . . 10_1101-2020_01_28_923532 293 1 The the DT 10_1101-2020_01_28_923532 293 2 much much RB 10_1101-2020_01_28_923532 293 3 lower low JJR 10_1101-2020_01_28_923532 293 4 relative relative JJ 10_1101-2020_01_28_923532 293 5 level level NN 10_1101-2020_01_28_923532 293 6 of of IN 10_1101-2020_01_28_923532 293 7 PTPRZ1 ptprz1 NN 10_1101-2020_01_28_923532 293 8 expression expression NN 10_1101-2020_01_28_923532 293 9 in in IN 10_1101-2020_01_28_923532 293 10 GSE84465 GSE84465 NNP 10_1101-2020_01_28_923532 293 11 is be VBZ 10_1101-2020_01_28_923532 293 12 likely likely RB 10_1101-2020_01_28_923532 293 13 due due IN 10_1101-2020_01_28_923532 293 14 to to IN 10_1101-2020_01_28_923532 293 15 the the DT 10_1101-2020_01_28_923532 293 16 heterogeneity heterogeneity NN 10_1101-2020_01_28_923532 293 17 of of IN 10_1101-2020_01_28_923532 293 18 brain brain NN 10_1101-2020_01_28_923532 293 19 cancer cancer NN 10_1101-2020_01_28_923532 293 20 types type NNS 10_1101-2020_01_28_923532 293 21 in in IN 10_1101-2020_01_28_923532 293 22 this this DT 10_1101-2020_01_28_923532 293 23 data datum NNS 10_1101-2020_01_28_923532 293 24 set46 set46 NNS 10_1101-2020_01_28_923532 293 25 . . . 10_1101-2020_01_28_923532 294 1 Among among IN 10_1101-2020_01_28_923532 294 2 the the DT 10_1101-2020_01_28_923532 294 3 58 58 CD 10_1101-2020_01_28_923532 294 4 genes gene NNS 10_1101-2020_01_28_923532 294 5 with with IN 10_1101-2020_01_28_923532 294 6 known know VBN 10_1101-2020_01_28_923532 294 7 ligand ligand NN 10_1101-2020_01_28_923532 294 8 - - HYPH 10_1101-2020_01_28_923532 294 9 mimicking mimicking NN 10_1101-2020_01_28_923532 294 10 peptides peptide NNS 10_1101-2020_01_28_923532 294 11 , , , 10_1101-2020_01_28_923532 294 12 EGFR EGFR NNP 10_1101-2020_01_28_923532 294 13 stands stand VBZ 10_1101-2020_01_28_923532 294 14 out out RP 10_1101-2020_01_28_923532 294 15 as as IN 10_1101-2020_01_28_923532 294 16 most most RBS 10_1101-2020_01_28_923532 294 17 common common JJ 10_1101-2020_01_28_923532 294 18 in in IN 10_1101-2020_01_28_923532 294 19 optimal optimal JJ 10_1101-2020_01_28_923532 294 20 solutions solution NNS 10_1101-2020_01_28_923532 294 21 ( ( -LRB- 10_1101-2020_01_28_923532 294 22 Supplementary Supplementary NNP 10_1101-2020_01_28_923532 294 23 Table Table NNP 10_1101-2020_01_28_923532 294 24 S4 S4 NNP 10_1101-2020_01_28_923532 294 25 ) ) -RRB- 10_1101-2020_01_28_923532 294 26 . . . 10_1101-2020_01_28_923532 295 1 Even even RB 10_1101-2020_01_28_923532 295 2 when when WRB 10_1101-2020_01_28_923532 295 3 all all DT 10_1101-2020_01_28_923532 295 4 1269 1269 CD 10_1101-2020_01_28_923532 295 5 genes gene NNS 10_1101-2020_01_28_923532 295 6 are be VBP 10_1101-2020_01_28_923532 295 7 available available JJ 10_1101-2020_01_28_923532 295 8 , , , 10_1101-2020_01_28_923532 295 9 EGFR EGFR NNP 10_1101-2020_01_28_923532 295 10 is be VBZ 10_1101-2020_01_28_923532 295 11 most most RBS 10_1101-2020_01_28_923532 295 12 commonly commonly RB 10_1101-2020_01_28_923532 295 13 selected select VBN 10_1101-2020_01_28_923532 295 14 for for IN 10_1101-2020_01_28_923532 295 15 the the DT 10_1101-2020_01_28_923532 295 16 brain brain NN 10_1101-2020_01_28_923532 295 17 cancer cancer NN 10_1101-2020_01_28_923532 295 18 data datum NNS 10_1101-2020_01_28_923532 295 19 set set NN 10_1101-2020_01_28_923532 295 20 ( ( -LRB- 10_1101-2020_01_28_923532 295 21 GSE84465 GSE84465 NNP 10_1101-2020_01_28_923532 295 22 ) ) -RRB- 10_1101-2020_01_28_923532 295 23 in in IN 10_1101-2020_01_28_923532 295 24 which which WDT 10_1101-2020_01_28_923532 295 25 PTPRZ1 ptprz1 NN 10_1101-2020_01_28_923532 295 26 is be VBZ 10_1101-2020_01_28_923532 295 27 not not RB 10_1101-2020_01_28_923532 295 28 as as RB 10_1101-2020_01_28_923532 295 29 highly highly RB 10_1101-2020_01_28_923532 295 30 overexpressed overexpresse VBN 10_1101-2020_01_28_923532 295 31 ( ( -LRB- 10_1101-2020_01_28_923532 295 32 Figure Figure NNP 10_1101-2020_01_28_923532 295 33 7C 7c NN 10_1101-2020_01_28_923532 295 34 ) ) -RRB- 10_1101-2020_01_28_923532 295 35 . . . 10_1101-2020_01_28_923532 296 1 PTPRZ1 PTPRZ1 NNP 10_1101-2020_01_28_923532 296 2 was be VBD 10_1101-2020_01_28_923532 296 3 the the DT 10_1101-2020_01_28_923532 296 4 fifth fifth JJ 10_1101-2020_01_28_923532 296 5 most most RBS 10_1101-2020_01_28_923532 296 6 frequently frequently RB 10_1101-2020_01_28_923532 296 7 occurring occur VBG 10_1101-2020_01_28_923532 296 8 gene gene NN 10_1101-2020_01_28_923532 296 9 in in IN 10_1101-2020_01_28_923532 296 10 optimal optimal JJ 10_1101-2020_01_28_923532 296 11 solutions solution NNS 10_1101-2020_01_28_923532 296 12 for for IN 10_1101-2020_01_28_923532 296 13 the the DT 10_1101-2020_01_28_923532 296 14 head head NN 10_1101-2020_01_28_923532 296 15 and and CC 10_1101-2020_01_28_923532 296 16 neck neck NN 10_1101-2020_01_28_923532 296 17 cancer cancer NN 10_1101-2020_01_28_923532 296 18 data datum NNS 10_1101-2020_01_28_923532 296 19 set set NN 10_1101-2020_01_28_923532 296 20 ( ( -LRB- 10_1101-2020_01_28_923532 296 21 GSE103322 GSE103322 NNP 10_1101-2020_01_28_923532 296 22 ) ) -RRB- 10_1101-2020_01_28_923532 296 23 . . . 10_1101-2020_01_28_923532 297 1 The the DT 10_1101-2020_01_28_923532 297 2 two two CD 10_1101-2020_01_28_923532 297 3 most most RBS 10_1101-2020_01_28_923532 297 4 common common JJ 10_1101-2020_01_28_923532 297 5 genes gene NNS 10_1101-2020_01_28_923532 297 6 by by IN 10_1101-2020_01_28_923532 297 7 a a DT 10_1101-2020_01_28_923532 297 8 large large JJ 10_1101-2020_01_28_923532 297 9 margin margin NN 10_1101-2020_01_28_923532 297 10 are be VBP 10_1101-2020_01_28_923532 297 11 CXADR CXADR NNP 10_1101-2020_01_28_923532 297 12 and and CC 10_1101-2020_01_28_923532 297 13 GPR87 GPR87 NNP 10_1101-2020_01_28_923532 297 14 . . . 10_1101-2020_01_28_923532 298 1 CXADR CXADR NNP 10_1101-2020_01_28_923532 298 2 has have VBZ 10_1101-2020_01_28_923532 298 3 been be VBN 10_1101-2020_01_28_923532 298 4 studied study VBN 10_1101-2020_01_28_923532 298 5 primarily primarily RB 10_1101-2020_01_28_923532 298 6 by by IN 10_1101-2020_01_28_923532 298 7 virologists virologist NNS 10_1101-2020_01_28_923532 298 8 and and CC 10_1101-2020_01_28_923532 298 9 immunologists immunologist NNS 10_1101-2020_01_28_923532 298 10 because because IN 10_1101-2020_01_28_923532 298 11 it -PRON- PRP 10_1101-2020_01_28_923532 298 12 encodes encode VBZ 10_1101-2020_01_28_923532 298 13 a a DT 10_1101-2020_01_28_923532 298 14 receptor receptor NN 10_1101-2020_01_28_923532 298 15 for for IN 10_1101-2020_01_28_923532 298 16 cocksackieviruses cocksackieviruse NNS 10_1101-2020_01_28_923532 298 17 and and CC 10_1101-2020_01_28_923532 298 18 adenoviruses47 adenoviruses47 NNS 10_1101-2020_01_28_923532 298 19 . . . 10_1101-2020_01_28_923532 299 1 In in IN 10_1101-2020_01_28_923532 299 2 one one CD 10_1101-2020_01_28_923532 299 3 breast breast NN 10_1101-2020_01_28_923532 299 4 cancer cancer NN 10_1101-2020_01_28_923532 299 5 study study NN 10_1101-2020_01_28_923532 299 6 , , , 10_1101-2020_01_28_923532 299 7 CXADR CXADR NNP 10_1101-2020_01_28_923532 299 8 was be VBD 10_1101-2020_01_28_923532 299 9 found find VBN 10_1101-2020_01_28_923532 299 10 to to TO 10_1101-2020_01_28_923532 299 11 play play VB 10_1101-2020_01_28_923532 299 12 a a DT 10_1101-2020_01_28_923532 299 13 role role NN 10_1101-2020_01_28_923532 299 14 in in IN 10_1101-2020_01_28_923532 299 15 regulating regulate VBG 10_1101-2020_01_28_923532 299 16 PTEN PTEN NNP 10_1101-2020_01_28_923532 299 17 in in IN 10_1101-2020_01_28_923532 299 18 the the DT 10_1101-2020_01_28_923532 299 19 AKT AKT NNP 10_1101-2020_01_28_923532 299 20 pathway pathway NN 10_1101-2020_01_28_923532 299 21 , , , 10_1101-2020_01_28_923532 299 22 but but CC 10_1101-2020_01_28_923532 299 23 CXADR CXADR NNP 10_1101-2020_01_28_923532 299 24 was be VBD 10_1101-2020_01_28_923532 299 25 underexpressed underexpresse VBN 10_1101-2020_01_28_923532 299 26 in in IN 10_1101-2020_01_28_923532 299 27 breast breast NN 10_1101-2020_01_28_923532 299 28 cancer48 cancer48 NN 10_1101-2020_01_28_923532 299 29 whereas whereas IN 10_1101-2020_01_28_923532 299 30 it -PRON- PRP 10_1101-2020_01_28_923532 299 31 is be VBZ 10_1101-2020_01_28_923532 299 32 overexpressed overexpresse VBN 10_1101-2020_01_28_923532 299 33 in in IN 10_1101-2020_01_28_923532 299 34 the the DT 10_1101-2020_01_28_923532 299 35 head head NN 10_1101-2020_01_28_923532 299 36 and and CC 10_1101-2020_01_28_923532 299 37 neck neck NN 10_1101-2020_01_28_923532 299 38 cancer cancer NN 10_1101-2020_01_28_923532 299 39 data datum NNS 10_1101-2020_01_28_923532 299 40 we -PRON- PRP 10_1101-2020_01_28_923532 299 41 analyzed analyze VBD 10_1101-2020_01_28_923532 299 42 . . . 10_1101-2020_01_28_923532 300 1 GPR87 GPR87 NNP 10_1101-2020_01_28_923532 300 2 is be VBZ 10_1101-2020_01_28_923532 300 3 a a DT 10_1101-2020_01_28_923532 300 4 rarely rarely RB 10_1101-2020_01_28_923532 300 5 studied study VBN 10_1101-2020_01_28_923532 300 6 G g NN 10_1101-2020_01_28_923532 300 7 protein protein NN 10_1101-2020_01_28_923532 300 8 - - HYPH 10_1101-2020_01_28_923532 300 9 coupled couple VBN 10_1101-2020_01_28_923532 300 10 receptor receptor NN 10_1101-2020_01_28_923532 300 11 with with IN 10_1101-2020_01_28_923532 300 12 an an DT 10_1101-2020_01_28_923532 300 13 unknown unknown JJ 10_1101-2020_01_28_923532 300 14 natural natural JJ 10_1101-2020_01_28_923532 300 15 ligand49 ligand49 NN 10_1101-2020_01_28_923532 300 16 . . . 10_1101-2020_01_28_923532 301 1 In in IN 10_1101-2020_01_28_923532 301 2 the the DT 10_1101-2020_01_28_923532 301 3 context context NN 10_1101-2020_01_28_923532 301 4 of of IN 10_1101-2020_01_28_923532 301 5 cancer cancer NN 10_1101-2020_01_28_923532 301 6 , , , 10_1101-2020_01_28_923532 301 7 GPR87 GPR87 NNP 10_1101-2020_01_28_923532 301 8 has have VBZ 10_1101-2020_01_28_923532 301 9 previously previously RB 10_1101-2020_01_28_923532 301 10 been be VBN 10_1101-2020_01_28_923532 301 11 reported report VBN 10_1101-2020_01_28_923532 301 12 as as IN 10_1101-2020_01_28_923532 301 13 overexpressed overexpresse VBN 10_1101-2020_01_28_923532 301 14 in in IN 10_1101-2020_01_28_923532 301 15 several several JJ 10_1101-2020_01_28_923532 301 16 tumor tumor NN 10_1101-2020_01_28_923532 301 17 types type NNS 10_1101-2020_01_28_923532 301 18 including include VBG 10_1101-2020_01_28_923532 301 19 lung lung NN 10_1101-2020_01_28_923532 301 20 and and CC 10_1101-2020_01_28_923532 301 21 liver49 liver49 NNP 10_1101-2020_01_28_923532 301 22 and and CC 10_1101-2020_01_28_923532 301 23 its -PRON- PRP$ 10_1101-2020_01_28_923532 301 24 overexpression overexpression NN 10_1101-2020_01_28_923532 301 25 may may MD 10_1101-2020_01_28_923532 301 26 play play VB 10_1101-2020_01_28_923532 301 27 an an DT 10_1101-2020_01_28_923532 301 28 oncogenic oncogenic JJ 10_1101-2020_01_28_923532 301 29 role role NN 10_1101-2020_01_28_923532 301 30 via via IN 10_1101-2020_01_28_923532 301 31 either either CC 10_1101-2020_01_28_923532 301 32 the the DT 10_1101-2020_01_28_923532 301 33 p53 p53 NN 10_1101-2020_01_28_923532 301 34 pathway50 pathway50 NN 10_1101-2020_01_28_923532 301 35 the the DT 10_1101-2020_01_28_923532 301 36 NFκB NFκB NNP 10_1101-2020_01_28_923532 301 37 pathway51 pathway51 NNS 10_1101-2020_01_28_923532 301 38 or or CC 10_1101-2020_01_28_923532 301 39 other other JJ 10_1101-2020_01_28_923532 301 40 pathways pathway NNS 10_1101-2020_01_28_923532 301 41 . . . 10_1101-2020_01_28_923532 302 1 Finally finally RB 10_1101-2020_01_28_923532 302 2 , , , 10_1101-2020_01_28_923532 302 3 we -PRON- PRP 10_1101-2020_01_28_923532 302 4 analyzed analyze VBD 10_1101-2020_01_28_923532 302 5 the the DT 10_1101-2020_01_28_923532 302 6 set set NN 10_1101-2020_01_28_923532 302 7 of of IN 10_1101-2020_01_28_923532 302 8 genes gene NNS 10_1101-2020_01_28_923532 302 9 in in IN 10_1101-2020_01_28_923532 302 10 optimal optimal JJ 10_1101-2020_01_28_923532 302 11 solutions solution NNS 10_1101-2020_01_28_923532 302 12 via via IN 10_1101-2020_01_28_923532 302 13 the the DT 10_1101-2020_01_28_923532 302 14 STRING string NN 10_1101-2020_01_28_923532 302 15 database database NN 10_1101-2020_01_28_923532 302 16 and and CC 10_1101-2020_01_28_923532 302 17 associated associate VBD 10_1101-2020_01_28_923532 302 18 tools52 tools52 VBZ 10_1101-2020_01_28_923532 302 19 to to TO 10_1101-2020_01_28_923532 302 20 perform perform VB 10_1101-2020_01_28_923532 302 21 several several JJ 10_1101-2020_01_28_923532 302 22 types type NNS 10_1101-2020_01_28_923532 302 23 of of IN 10_1101-2020_01_28_923532 302 24 gene gene NN 10_1101-2020_01_28_923532 302 25 set set NN 10_1101-2020_01_28_923532 302 26 and and CC 10_1101-2020_01_28_923532 302 27 pathway pathway JJ 10_1101-2020_01_28_923532 302 28 enrichment enrichment NN 10_1101-2020_01_28_923532 302 29 analyses analysis NNS 10_1101-2020_01_28_923532 302 30 . . . 10_1101-2020_01_28_923532 303 1 Figures figure NNS 10_1101-2020_01_28_923532 303 2 S30-S33 S30-S33 NNP 10_1101-2020_01_28_923532 303 3 ( ( -LRB- 10_1101-2020_01_28_923532 303 4 Supplementary Supplementary NNP 10_1101-2020_01_28_923532 303 5 Materials Materials NNP 10_1101-2020_01_28_923532 303 6 12 12 CD 10_1101-2020_01_28_923532 303 7 ) ) -RRB- 10_1101-2020_01_28_923532 303 8 show show VBP 10_1101-2020_01_28_923532 303 9 STRING string NN 10_1101-2020_01_28_923532 303 10 - - HYPH 10_1101-2020_01_28_923532 303 11 derived derive VBN 10_1101-2020_01_28_923532 303 12 protein protein NN 10_1101-2020_01_28_923532 303 13 - - HYPH 10_1101-2020_01_28_923532 303 14 protein protein NN 10_1101-2020_01_28_923532 303 15 interaction interaction NN 10_1101-2020_01_28_923532 303 16 networks network NNS 10_1101-2020_01_28_923532 303 17 for for IN 10_1101-2020_01_28_923532 303 18 the the DT 10_1101-2020_01_28_923532 303 19 25 25 CD 10_1101-2020_01_28_923532 303 20 most most RBS 10_1101-2020_01_28_923532 303 21 common common JJ 10_1101-2020_01_28_923532 303 22 genes gene NNS 10_1101-2020_01_28_923532 303 23 in in IN 10_1101-2020_01_28_923532 303 24 the the DT 10_1101-2020_01_28_923532 303 25 same same JJ 10_1101-2020_01_28_923532 303 26 four four CD 10_1101-2020_01_28_923532 303 27 data datum NNS 10_1101-2020_01_28_923532 303 28 for for IN 10_1101-2020_01_28_923532 303 29 which which WDT 10_1101-2020_01_28_923532 303 30 we -PRON- PRP 10_1101-2020_01_28_923532 303 31 showed show VBD 10_1101-2020_01_28_923532 303 32 co- co- IN 10_1101-2020_01_28_923532 303 33 occurrence occurrence NN 10_1101-2020_01_28_923532 303 34 graphs graphs NN 10_1101-2020_01_28_923532 303 35 in in IN 10_1101-2020_01_28_923532 303 36 Figure Figure NNP 10_1101-2020_01_28_923532 303 37 7C 7C NNP 10_1101-2020_01_28_923532 303 38 - - HYPH 10_1101-2020_01_28_923532 303 39 F. F. NNP 10_1101-2020_01_28_923532 303 40 Again Again NNP 10_1101-2020_01_28_923532 303 41 , , , 10_1101-2020_01_28_923532 303 42 EGFR EGFR NNP 10_1101-2020_01_28_923532 303 43 stands stand VBZ 10_1101-2020_01_28_923532 303 44 out out RP 10_1101-2020_01_28_923532 303 45 as as IN 10_1101-2020_01_28_923532 303 46 being be VBG 10_1101-2020_01_28_923532 303 47 a a DT 10_1101-2020_01_28_923532 303 48 highly highly RB 10_1101-2020_01_28_923532 303 49 connected connected JJ 10_1101-2020_01_28_923532 303 50 protein protein NN 10_1101-2020_01_28_923532 303 51 node node RB 10_1101-2020_01_28_923532 303 52 in in IN 10_1101-2020_01_28_923532 303 53 the the DT 10_1101-2020_01_28_923532 303 54 solution solution NN 10_1101-2020_01_28_923532 303 55 networks network NNS 10_1101-2020_01_28_923532 303 56 for for IN 10_1101-2020_01_28_923532 303 57 both both CC 10_1101-2020_01_28_923532 303 58 the the DT 10_1101-2020_01_28_923532 303 59 brain brain NN 10_1101-2020_01_28_923532 303 60 cancer cancer NN 10_1101-2020_01_28_923532 303 61 and and CC 10_1101-2020_01_28_923532 303 62 head head NN 10_1101-2020_01_28_923532 303 63 and and CC 10_1101-2020_01_28_923532 303 64 neck neck NN 10_1101-2020_01_28_923532 303 65 cancer cancer NN 10_1101-2020_01_28_923532 303 66 data datum NNS 10_1101-2020_01_28_923532 303 67 sets set NNS 10_1101-2020_01_28_923532 303 68 . . . 10_1101-2020_01_28_923532 304 1 Among among IN 10_1101-2020_01_28_923532 304 2 the the DT 10_1101-2020_01_28_923532 304 3 30 30 CD 10_1101-2020_01_28_923532 304 4 genes gene NNS 10_1101-2020_01_28_923532 304 5 in in IN 10_1101-2020_01_28_923532 304 6 the the DT 10_1101-2020_01_28_923532 304 7 1269-gene 1269-gene CD 10_1101-2020_01_28_923532 304 8 set set NN 10_1101-2020_01_28_923532 304 9 most most RBS 10_1101-2020_01_28_923532 304 10 commonly commonly RB 10_1101-2020_01_28_923532 304 11 in in IN 10_1101-2020_01_28_923532 304 12 optimal optimal JJ 10_1101-2020_01_28_923532 304 13 solutions solution NNS 10_1101-2020_01_28_923532 304 14 ( ( -LRB- 10_1101-2020_01_28_923532 304 15 Supplementary Supplementary NNP 10_1101-2020_01_28_923532 304 16 Table Table NNP 10_1101-2020_01_28_923532 304 17 S5 s5 NN 10_1101-2020_01_28_923532 304 18 ) ) -RRB- 10_1101-2020_01_28_923532 304 19 , , , 10_1101-2020_01_28_923532 304 20 there there EX 10_1101-2020_01_28_923532 304 21 are be VBP 10_1101-2020_01_28_923532 304 22 six six CD 10_1101-2020_01_28_923532 304 23 kinases kinase NNS 10_1101-2020_01_28_923532 304 24 ( ( -LRB- 10_1101-2020_01_28_923532 304 25 out out IN 10_1101-2020_01_28_923532 304 26 of of IN 10_1101-2020_01_28_923532 304 27 88 88 CD 10_1101-2020_01_28_923532 304 28 total total JJ 10_1101-2020_01_28_923532 304 29 human human JJ 10_1101-2020_01_28_923532 304 30 transmembrane transmembrane NNP 10_1101-2020_01_28_923532 304 31 kinases kinase NNS 10_1101-2020_01_28_923532 304 32 with with IN 10_1101-2020_01_28_923532 304 33 a a DT 10_1101-2020_01_28_923532 304 34 catalytic catalytic JJ 10_1101-2020_01_28_923532 304 35 domain domain NN 10_1101-2020_01_28_923532 304 36 , , , 10_1101-2020_01_28_923532 304 37 STRING string NN 10_1101-2020_01_28_923532 304 38 gene gene NN 10_1101-2020_01_28_923532 304 39 set set VBP 10_1101-2020_01_28_923532 304 40 enrichment enrichment NN 10_1101-2020_01_28_923532 304 41 𝑝 𝑝 NNP 10_1101-2020_01_28_923532 304 42 < < XX 10_1101-2020_01_28_923532 304 43 1𝑒 1𝑒 NNP 10_1101-2020_01_28_923532 304 44 − − NNP 10_1101-2020_01_28_923532 304 45 6 6 CD 10_1101-2020_01_28_923532 304 46 ) ) -RRB- 10_1101-2020_01_28_923532 304 47 , , , 10_1101-2020_01_28_923532 304 48 namely namely RB 10_1101-2020_01_28_923532 304 49 { { -LRB- 10_1101-2020_01_28_923532 304 50 EGFR EGFR NNP 10_1101-2020_01_28_923532 304 51 , , , 10_1101-2020_01_28_923532 304 52 EPHB4 EPHB4 NNP 10_1101-2020_01_28_923532 304 53 , , , 10_1101-2020_01_28_923532 304 54 ERBB3 ERBB3 NNS 10_1101-2020_01_28_923532 304 55 , , , 10_1101-2020_01_28_923532 304 56 FGFR1 FGFR1 NNP 10_1101-2020_01_28_923532 304 57 , , , 10_1101-2020_01_28_923532 304 58 INSR INSR NNP 10_1101-2020_01_28_923532 304 59 , , , 10_1101-2020_01_28_923532 304 60 NTRK2 NTRK2 . 10_1101-2020_01_28_923532 304 61 } } -RRB- 10_1101-2020_01_28_923532 304 62 and and CC 10_1101-2020_01_28_923532 304 63 two two CD 10_1101-2020_01_28_923532 304 64 phosphatases phosphatase NNS 10_1101-2020_01_28_923532 304 65 { { -LRB- 10_1101-2020_01_28_923532 304 66 PTPRJ ptprj NN 10_1101-2020_01_28_923532 304 67 , , , 10_1101-2020_01_28_923532 304 68 PTPRZ1 ptprz1 NN 10_1101-2020_01_28_923532 304 69 } } -RRB- 10_1101-2020_01_28_923532 304 70 . . . 10_1101-2020_01_28_923532 305 1 The the DT 10_1101-2020_01_28_923532 305 2 KEGG KEGG NNP 10_1101-2020_01_28_923532 305 3 pathways pathway VBZ 10_1101-2020_01_28_923532 305 4 most most JJS 10_1101-2020_01_28_923532 305 5 105 105 CD 10_1101-2020_01_28_923532 305 6 and and CC 10_1101-2020_01_28_923532 305 7 is be VBZ 10_1101-2020_01_28_923532 305 8 also also RB 10_1101-2020_01_28_923532 305 9 made make VBN 10_1101-2020_01_28_923532 305 10 available available JJ 10_1101-2020_01_28_923532 305 11 for for IN 10_1101-2020_01_28_923532 305 12 use use NN 10_1101-2020_01_28_923532 305 13 under under IN 10_1101-2020_01_28_923532 305 14 a a DT 10_1101-2020_01_28_923532 305 15 CC0 CC0 NNP 10_1101-2020_01_28_923532 305 16 license license NN 10_1101-2020_01_28_923532 305 17 . . . 10_1101-2020_01_28_923532 306 1 ( ( -LRB- 10_1101-2020_01_28_923532 306 2 which which WDT 10_1101-2020_01_28_923532 306 3 was be VBD 10_1101-2020_01_28_923532 306 4 not not RB 10_1101-2020_01_28_923532 306 5 certified certify VBN 10_1101-2020_01_28_923532 306 6 by by IN 10_1101-2020_01_28_923532 306 7 peer peer NN 10_1101-2020_01_28_923532 306 8 review review NN 10_1101-2020_01_28_923532 306 9 ) ) -RRB- 10_1101-2020_01_28_923532 306 10 is be VBZ 10_1101-2020_01_28_923532 306 11 the the DT 10_1101-2020_01_28_923532 306 12 author author NN 10_1101-2020_01_28_923532 306 13 / / SYM 10_1101-2020_01_28_923532 306 14 funder funder NN 10_1101-2020_01_28_923532 306 15 . . . 10_1101-2020_01_28_923532 307 1 This this DT 10_1101-2020_01_28_923532 307 2 article article NN 10_1101-2020_01_28_923532 307 3 is be VBZ 10_1101-2020_01_28_923532 307 4 a a DT 10_1101-2020_01_28_923532 307 5 US US NNP 10_1101-2020_01_28_923532 307 6 Government Government NNP 10_1101-2020_01_28_923532 307 7 work work NN 10_1101-2020_01_28_923532 307 8 . . . 10_1101-2020_01_28_923532 308 1 It -PRON- PRP 10_1101-2020_01_28_923532 308 2 is be VBZ 10_1101-2020_01_28_923532 308 3 not not RB 10_1101-2020_01_28_923532 308 4 subject subject JJ 10_1101-2020_01_28_923532 308 5 to to IN 10_1101-2020_01_28_923532 308 6 copyright copyright NN 10_1101-2020_01_28_923532 308 7 under under IN 10_1101-2020_01_28_923532 308 8 17 17 CD 10_1101-2020_01_28_923532 308 9 USC usc NN 10_1101-2020_01_28_923532 308 10 The the DT 10_1101-2020_01_28_923532 308 11 copyright copyright NN 10_1101-2020_01_28_923532 308 12 holder holder NN 10_1101-2020_01_28_923532 308 13 for for IN 10_1101-2020_01_28_923532 308 14 this this DT 10_1101-2020_01_28_923532 308 15 preprintthis preprintthis NN 10_1101-2020_01_28_923532 308 16 version version NN 10_1101-2020_01_28_923532 308 17 posted post VBD 10_1101-2020_01_28_923532 308 18 February February NNP 10_1101-2020_01_28_923532 308 19 12 12 CD 10_1101-2020_01_28_923532 308 20 , , , 10_1101-2020_01_28_923532 308 21 2021 2021 CD 10_1101-2020_01_28_923532 308 22 . . . 10_1101-2020_01_28_923532 308 23 ; ; : 10_1101-2020_01_28_923532 308 24 https://doi.org/10.1101/2020.01.28.923532doi https://doi.org/10.1101/2020.01.28.923532doi ADD 10_1101-2020_01_28_923532 308 25 : : : 10_1101-2020_01_28_923532 308 26 bioRxiv biorxiv VB 10_1101-2020_01_28_923532 308 27 preprint preprint NN 10_1101-2020_01_28_923532 308 28 https://doi.org/10.1101/2020.01.28.923532 https://doi.org/10.1101/2020.01.28.923532 UH 10_1101-2020_01_28_923532 308 29 25 25 CD 10_1101-2020_01_28_923532 308 30 significantly significantly RB 10_1101-2020_01_28_923532 308 31 enriched enrich VBN 10_1101-2020_01_28_923532 308 32 , , , 10_1101-2020_01_28_923532 308 33 all all RB 10_1101-2020_01_28_923532 308 34 at at IN 10_1101-2020_01_28_923532 308 35 𝐹𝐷𝑅 𝐹𝐷𝑅 NNP 10_1101-2020_01_28_923532 308 36 < < XX 10_1101-2020_01_28_923532 308 37 0.005 0.005 XX 10_1101-2020_01_28_923532 308 38 , , , 10_1101-2020_01_28_923532 308 39 are be VBP 10_1101-2020_01_28_923532 308 40 ( ( -LRB- 10_1101-2020_01_28_923532 308 41 “ " `` 10_1101-2020_01_28_923532 308 42 proteoglycans proteoglycans NNPS 10_1101-2020_01_28_923532 308 43 in in IN 10_1101-2020_01_28_923532 308 44 cancer cancer NN 10_1101-2020_01_28_923532 308 45 ” " '' 10_1101-2020_01_28_923532 308 46 ) ) -RRB- 10_1101-2020_01_28_923532 308 47 represented represent VBN 10_1101-2020_01_28_923532 308 48 by by IN 10_1101-2020_01_28_923532 308 49 { { -LRB- 10_1101-2020_01_28_923532 308 50 CD44 CD44 NNP 10_1101-2020_01_28_923532 308 51 , , , 10_1101-2020_01_28_923532 308 52 EGFR EGFR NNP 10_1101-2020_01_28_923532 308 53 , , , 10_1101-2020_01_28_923532 308 54 ERBB3 ERBB3 NNS 10_1101-2020_01_28_923532 308 55 , , , 10_1101-2020_01_28_923532 308 56 FGFR1 fgfr1 CD 10_1101-2020_01_28_923532 308 57 , , , 10_1101-2020_01_28_923532 308 58 PLAUR PLAUR NNP 10_1101-2020_01_28_923532 308 59 } } -RRB- 10_1101-2020_01_28_923532 308 60 , , , 10_1101-2020_01_28_923532 308 61 ( ( -LRB- 10_1101-2020_01_28_923532 308 62 “ " `` 10_1101-2020_01_28_923532 308 63 adherens adherens NNPS 10_1101-2020_01_28_923532 308 64 junction junction NNP 10_1101-2020_01_28_923532 308 65 ” " '' 10_1101-2020_01_28_923532 308 66 ) ) -RRB- 10_1101-2020_01_28_923532 308 67 represented represent VBN 10_1101-2020_01_28_923532 308 68 by by IN 10_1101-2020_01_28_923532 308 69 { { -LRB- 10_1101-2020_01_28_923532 308 70 EGFR EGFR NNP 10_1101-2020_01_28_923532 308 71 , , , 10_1101-2020_01_28_923532 308 72 FGFR1 FGFR1 NNS 10_1101-2020_01_28_923532 308 73 , , , 10_1101-2020_01_28_923532 308 74 INSR INSR NNP 10_1101-2020_01_28_923532 308 75 , , , 10_1101-2020_01_28_923532 308 76 PTPRJ PTPRJ NNP 10_1101-2020_01_28_923532 308 77 } } -RRB- 10_1101-2020_01_28_923532 308 78 , , , 10_1101-2020_01_28_923532 308 79 and and CC 10_1101-2020_01_28_923532 308 80 ( ( -LRB- 10_1101-2020_01_28_923532 308 81 “ " `` 10_1101-2020_01_28_923532 308 82 calcium calcium NN 10_1101-2020_01_28_923532 308 83 signaling signal VBG 10_1101-2020_01_28_923532 308 84 pathway pathway NN 10_1101-2020_01_28_923532 308 85 ” " '' 10_1101-2020_01_28_923532 308 86 ) ) -RRB- 10_1101-2020_01_28_923532 308 87 represented represent VBN 10_1101-2020_01_28_923532 308 88 by by IN 10_1101-2020_01_28_923532 308 89 { { -LRB- 10_1101-2020_01_28_923532 308 90 EDNRB EDNRB NNP 10_1101-2020_01_28_923532 308 91 , , , 10_1101-2020_01_28_923532 308 92 EGFR EGFR NNP 10_1101-2020_01_28_923532 308 93 , , , 10_1101-2020_01_28_923532 308 94 ERBB3 ERBB3 NNS 10_1101-2020_01_28_923532 308 95 , , , 10_1101-2020_01_28_923532 308 96 GRPR GRPR NNP 10_1101-2020_01_28_923532 308 97 , , , 10_1101-2020_01_28_923532 308 98 P2RX6 P2RX6 NNP 10_1101-2020_01_28_923532 308 99 } } -RRB- 10_1101-2020_01_28_923532 308 100 . . . 10_1101-2020_01_28_923532 309 1 The the DT 10_1101-2020_01_28_923532 309 2 one one CD 10_1101-2020_01_28_923532 309 3 gene gene NN 10_1101-2020_01_28_923532 309 4 in in IN 10_1101-2020_01_28_923532 309 5 the the DT 10_1101-2020_01_28_923532 309 6 intersection intersection NN 10_1101-2020_01_28_923532 309 7 of of IN 10_1101-2020_01_28_923532 309 8 all all PDT 10_1101-2020_01_28_923532 309 9 these these DT 10_1101-2020_01_28_923532 309 10 pathways pathway NNS 10_1101-2020_01_28_923532 309 11 and and CC 10_1101-2020_01_28_923532 309 12 functions function NNS 10_1101-2020_01_28_923532 309 13 is be VBZ 10_1101-2020_01_28_923532 309 14 EGFR EGFR VBN 10_1101-2020_01_28_923532 309 15 . . . 10_1101-2020_01_28_923532 310 1 Discussion discussion NN 10_1101-2020_01_28_923532 310 2 In in IN 10_1101-2020_01_28_923532 310 3 this this DT 10_1101-2020_01_28_923532 310 4 multi multi JJ 10_1101-2020_01_28_923532 310 5 - - JJ 10_1101-2020_01_28_923532 310 6 disciplinary disciplinary JJ 10_1101-2020_01_28_923532 310 7 study study NN 10_1101-2020_01_28_923532 310 8 , , , 10_1101-2020_01_28_923532 310 9 we -PRON- PRP 10_1101-2020_01_28_923532 310 10 harnessed harness VBD 10_1101-2020_01_28_923532 310 11 techniques technique NNS 10_1101-2020_01_28_923532 310 12 from from IN 10_1101-2020_01_28_923532 310 13 combinatorial combinatorial JJ 10_1101-2020_01_28_923532 310 14 optimization optimization NN 10_1101-2020_01_28_923532 310 15 to to TO 10_1101-2020_01_28_923532 310 16 analyze analyze VB 10_1101-2020_01_28_923532 310 17 publicly publicly RB 10_1101-2020_01_28_923532 310 18 available available JJ 10_1101-2020_01_28_923532 310 19 single single JJ 10_1101-2020_01_28_923532 310 20 - - HYPH 10_1101-2020_01_28_923532 310 21 cell cell NN 10_1101-2020_01_28_923532 310 22 tumor tumor NN 10_1101-2020_01_28_923532 310 23 transcriptomics transcriptomic NNS 10_1101-2020_01_28_923532 310 24 data datum NNS 10_1101-2020_01_28_923532 310 25 to to TO 10_1101-2020_01_28_923532 310 26 chart chart VB 10_1101-2020_01_28_923532 310 27 the the DT 10_1101-2020_01_28_923532 310 28 landscape landscape NN 10_1101-2020_01_28_923532 310 29 of of IN 10_1101-2020_01_28_923532 310 30 future future JJ 10_1101-2020_01_28_923532 310 31 personalized personalize VBN 10_1101-2020_01_28_923532 310 32 combinations combination NNS 10_1101-2020_01_28_923532 310 33 that that WDT 10_1101-2020_01_28_923532 310 34 are be VBP 10_1101-2020_01_28_923532 310 35 based base VBN 10_1101-2020_01_28_923532 310 36 on on IN 10_1101-2020_01_28_923532 310 37 ‘ ' `` 10_1101-2020_01_28_923532 310 38 modular modular JJ 10_1101-2020_01_28_923532 310 39 ’ ' '' 10_1101-2020_01_28_923532 310 40 therapies therapy NNS 10_1101-2020_01_28_923532 310 41 , , , 10_1101-2020_01_28_923532 310 42 including include VBG 10_1101-2020_01_28_923532 310 43 CAR CAR NNP 10_1101-2020_01_28_923532 310 44 - - HYPH 10_1101-2020_01_28_923532 310 45 T t NN 10_1101-2020_01_28_923532 310 46 therapy therapy NN 10_1101-2020_01_28_923532 310 47 . . . 10_1101-2020_01_28_923532 311 1 We -PRON- PRP 10_1101-2020_01_28_923532 311 2 showed show VBD 10_1101-2020_01_28_923532 311 3 that that IN 10_1101-2020_01_28_923532 311 4 , , , 10_1101-2020_01_28_923532 311 5 for for IN 10_1101-2020_01_28_923532 311 6 most most JJS 10_1101-2020_01_28_923532 311 7 tumors tumor NNS 10_1101-2020_01_28_923532 311 8 we -PRON- PRP 10_1101-2020_01_28_923532 311 9 studied study VBD 10_1101-2020_01_28_923532 311 10 , , , 10_1101-2020_01_28_923532 311 11 four four CD 10_1101-2020_01_28_923532 311 12 modular modular JJ 10_1101-2020_01_28_923532 311 13 medications medication NNS 10_1101-2020_01_28_923532 311 14 targeting target VBG 10_1101-2020_01_28_923532 311 15 different different JJ 10_1101-2020_01_28_923532 311 16 overexpressed overexpresse VBN 10_1101-2020_01_28_923532 311 17 receptors receptor NNS 10_1101-2020_01_28_923532 311 18 may may MD 10_1101-2020_01_28_923532 311 19 suffice suffice VB 10_1101-2020_01_28_923532 311 20 to to TO 10_1101-2020_01_28_923532 311 21 selectively selectively RB 10_1101-2020_01_28_923532 311 22 kill kill VB 10_1101-2020_01_28_923532 311 23 most most JJS 10_1101-2020_01_28_923532 311 24 tumor tumor NN 10_1101-2020_01_28_923532 311 25 cells cell NNS 10_1101-2020_01_28_923532 311 26 , , , 10_1101-2020_01_28_923532 311 27 while while IN 10_1101-2020_01_28_923532 311 28 sparing spare VBG 10_1101-2020_01_28_923532 311 29 most most JJS 10_1101-2020_01_28_923532 311 30 of of IN 10_1101-2020_01_28_923532 311 31 the the DT 10_1101-2020_01_28_923532 311 32 non non JJ 10_1101-2020_01_28_923532 311 33 - - JJ 10_1101-2020_01_28_923532 311 34 cancerous cancerous JJ 10_1101-2020_01_28_923532 311 35 cells cell NNS 10_1101-2020_01_28_923532 311 36 ( ( -LRB- 10_1101-2020_01_28_923532 311 37 Figures figure NNS 10_1101-2020_01_28_923532 311 38 3 3 CD 10_1101-2020_01_28_923532 311 39 and and CC 10_1101-2020_01_28_923532 311 40 4 4 CD 10_1101-2020_01_28_923532 311 41 and and CC 10_1101-2020_01_28_923532 311 42 Table Table NNP 10_1101-2020_01_28_923532 311 43 S2 S2 NNP 10_1101-2020_01_28_923532 311 44 ) ) -RRB- 10_1101-2020_01_28_923532 311 45 . . . 10_1101-2020_01_28_923532 312 1 For for IN 10_1101-2020_01_28_923532 312 2 the the DT 10_1101-2020_01_28_923532 312 3 more more RBR 10_1101-2020_01_28_923532 312 4 restricted restricted JJ 10_1101-2020_01_28_923532 312 5 sets set NNS 10_1101-2020_01_28_923532 312 6 of of IN 10_1101-2020_01_28_923532 312 7 low- low- NN 10_1101-2020_01_28_923532 312 8 expression expression NN 10_1101-2020_01_28_923532 312 9 genes25 genes25 NNPS 10_1101-2020_01_28_923532 312 10 or or CC 10_1101-2020_01_28_923532 312 11 the the DT 10_1101-2020_01_28_923532 312 12 58 58 CD 10_1101-2020_01_28_923532 312 13 receptors receptor NNS 10_1101-2020_01_28_923532 312 14 with with IN 10_1101-2020_01_28_923532 312 15 validated validate VBN 10_1101-2020_01_28_923532 312 16 ligand ligand NN 10_1101-2020_01_28_923532 312 17 - - HYPH 10_1101-2020_01_28_923532 312 18 mimicking mimicking NN 10_1101-2020_01_28_923532 312 19 peptides peptide NNS 10_1101-2020_01_28_923532 312 20 ( ( -LRB- 10_1101-2020_01_28_923532 312 21 Tables tables NN 10_1101-2020_01_28_923532 312 22 3 3 CD 10_1101-2020_01_28_923532 312 23 and and CC 10_1101-2020_01_28_923532 312 24 4 4 CD 10_1101-2020_01_28_923532 312 25 ) ) -RRB- 10_1101-2020_01_28_923532 312 26 , , , 10_1101-2020_01_28_923532 312 27 some some DT 10_1101-2020_01_28_923532 312 28 patients patient NNS 10_1101-2020_01_28_923532 312 29 do do VBP 10_1101-2020_01_28_923532 312 30 not not RB 10_1101-2020_01_28_923532 312 31 have have VB 10_1101-2020_01_28_923532 312 32 feasible feasible JJ 10_1101-2020_01_28_923532 312 33 solutions solution NNS 10_1101-2020_01_28_923532 312 34 , , , 10_1101-2020_01_28_923532 312 35 especially especially RB 10_1101-2020_01_28_923532 312 36 as as IN 10_1101-2020_01_28_923532 312 37 we -PRON- PRP 10_1101-2020_01_28_923532 312 38 reduce reduce VBP 10_1101-2020_01_28_923532 312 39 the the DT 10_1101-2020_01_28_923532 312 40 TPM TPM NNP 10_1101-2020_01_28_923532 312 41 expression expression NN 10_1101-2020_01_28_923532 312 42 used use VBN 10_1101-2020_01_28_923532 312 43 for for IN 10_1101-2020_01_28_923532 312 44 filtering filter VBG 10_1101-2020_01_28_923532 312 45 the the DT 10_1101-2020_01_28_923532 312 46 gene gene NN 10_1101-2020_01_28_923532 312 47 set set VBN 10_1101-2020_01_28_923532 312 48 to to TO 10_1101-2020_01_28_923532 312 49 avoid avoid VB 10_1101-2020_01_28_923532 312 50 targeting target VBG 10_1101-2020_01_28_923532 312 51 non non JJ 10_1101-2020_01_28_923532 312 52 - - JJ 10_1101-2020_01_28_923532 312 53 cancerous cancerous JJ 10_1101-2020_01_28_923532 312 54 tissues tissue NNS 10_1101-2020_01_28_923532 312 55 . . . 10_1101-2020_01_28_923532 313 1 These these DT 10_1101-2020_01_28_923532 313 2 findings finding NNS 10_1101-2020_01_28_923532 313 3 indicate indicate VBP 10_1101-2020_01_28_923532 313 4 , , , 10_1101-2020_01_28_923532 313 5 on on IN 10_1101-2020_01_28_923532 313 6 one one CD 10_1101-2020_01_28_923532 313 7 hand hand NN 10_1101-2020_01_28_923532 313 8 , , , 10_1101-2020_01_28_923532 313 9 that that WDT 10_1101-2020_01_28_923532 313 10 researchers researcher NNS 10_1101-2020_01_28_923532 313 11 designing design VBG 10_1101-2020_01_28_923532 313 12 ligand ligand NN 10_1101-2020_01_28_923532 313 13 - - HYPH 10_1101-2020_01_28_923532 313 14 mimicking mimicking NN 10_1101-2020_01_28_923532 313 15 peptides peptide NNS 10_1101-2020_01_28_923532 313 16 have have VBP 10_1101-2020_01_28_923532 313 17 been be VBN 10_1101-2020_01_28_923532 313 18 astute astute JJ 10_1101-2020_01_28_923532 313 19 in in IN 10_1101-2020_01_28_923532 313 20 choosing choose VBG 10_1101-2020_01_28_923532 313 21 targets target NNS 10_1101-2020_01_28_923532 313 22 relevant relevant JJ 10_1101-2020_01_28_923532 313 23 to to IN 10_1101-2020_01_28_923532 313 24 cancer cancer NN 10_1101-2020_01_28_923532 313 25 . . . 10_1101-2020_01_28_923532 314 1 On on IN 10_1101-2020_01_28_923532 314 2 the the DT 10_1101-2020_01_28_923532 314 3 other other JJ 10_1101-2020_01_28_923532 314 4 hand hand NN 10_1101-2020_01_28_923532 314 5 , , , 10_1101-2020_01_28_923532 314 6 these these DT 10_1101-2020_01_28_923532 314 7 results result NNS 10_1101-2020_01_28_923532 314 8 suggest suggest VBP 10_1101-2020_01_28_923532 314 9 that that IN 10_1101-2020_01_28_923532 314 10 there there EX 10_1101-2020_01_28_923532 314 11 is be VBZ 10_1101-2020_01_28_923532 314 12 a a DT 10_1101-2020_01_28_923532 314 13 need need NN 10_1101-2020_01_28_923532 314 14 for for IN 10_1101-2020_01_28_923532 314 15 extending extend VBG 10_1101-2020_01_28_923532 314 16 the the DT 10_1101-2020_01_28_923532 314 17 set set NN 10_1101-2020_01_28_923532 314 18 of of IN 10_1101-2020_01_28_923532 314 19 cell cell NN 10_1101-2020_01_28_923532 314 20 surface surface NN 10_1101-2020_01_28_923532 314 21 receptors receptor NNS 10_1101-2020_01_28_923532 314 22 that that WDT 10_1101-2020_01_28_923532 314 23 can can MD 10_1101-2020_01_28_923532 314 24 be be VB 10_1101-2020_01_28_923532 314 25 targeted target VBN 10_1101-2020_01_28_923532 314 26 to to TO 10_1101-2020_01_28_923532 314 27 enter enter VB 10_1101-2020_01_28_923532 314 28 tumor tumor NN 10_1101-2020_01_28_923532 314 29 cells cell NNS 10_1101-2020_01_28_923532 314 30 with with IN 10_1101-2020_01_28_923532 314 31 ligated ligate VBN 10_1101-2020_01_28_923532 314 32 chemotherapy chemotherapy NN 10_1101-2020_01_28_923532 314 33 agents agent NNS 10_1101-2020_01_28_923532 314 34 . . . 10_1101-2020_01_28_923532 315 1 Remarkably remarkably RB 10_1101-2020_01_28_923532 315 2 , , , 10_1101-2020_01_28_923532 315 3 we -PRON- PRP 10_1101-2020_01_28_923532 315 4 found find VBD 10_1101-2020_01_28_923532 315 5 that that IN 10_1101-2020_01_28_923532 315 6 if if IN 10_1101-2020_01_28_923532 315 7 one one NN 10_1101-2020_01_28_923532 315 8 designs design VBZ 10_1101-2020_01_28_923532 315 9 the the DT 10_1101-2020_01_28_923532 315 10 optimal optimal JJ 10_1101-2020_01_28_923532 315 11 set set NN 10_1101-2020_01_28_923532 315 12 of of IN 10_1101-2020_01_28_923532 315 13 treatments treatment NNS 10_1101-2020_01_28_923532 315 14 for for IN 10_1101-2020_01_28_923532 315 15 an an DT 10_1101-2020_01_28_923532 315 16 entire entire JJ 10_1101-2020_01_28_923532 315 17 cohort cohort NN 10_1101-2020_01_28_923532 315 18 adopting adopt VBG 10_1101-2020_01_28_923532 315 19 a a DT 10_1101-2020_01_28_923532 315 20 fairness fairness NN 10_1101-2020_01_28_923532 315 21 - - HYPH 10_1101-2020_01_28_923532 315 22 based base VBN 10_1101-2020_01_28_923532 315 23 policy policy NN 10_1101-2020_01_28_923532 315 24 , , , 10_1101-2020_01_28_923532 315 25 then then RB 10_1101-2020_01_28_923532 315 26 the the DT 10_1101-2020_01_28_923532 315 27 size size NN 10_1101-2020_01_28_923532 315 28 of of IN 10_1101-2020_01_28_923532 315 29 the the DT 10_1101-2020_01_28_923532 315 30 projected project VBN 10_1101-2020_01_28_923532 315 31 treatment treatment NN 10_1101-2020_01_28_923532 315 32 combinations combination NNS 10_1101-2020_01_28_923532 315 33 for for IN 10_1101-2020_01_28_923532 315 34 individual individual JJ 10_1101-2020_01_28_923532 315 35 patients patient NNS 10_1101-2020_01_28_923532 315 36 are be VBP 10_1101-2020_01_28_923532 315 37 at at IN 10_1101-2020_01_28_923532 315 38 most most RBS 10_1101-2020_01_28_923532 315 39 3 3 CD 10_1101-2020_01_28_923532 315 40 targets target NNS 10_1101-2020_01_28_923532 315 41 larger large JJR 10_1101-2020_01_28_923532 315 42 , , , 10_1101-2020_01_28_923532 315 43 and and CC 10_1101-2020_01_28_923532 315 44 in in IN 10_1101-2020_01_28_923532 315 45 most most JJS 10_1101-2020_01_28_923532 315 46 data data NN 10_1101-2020_01_28_923532 315 47 sets set NNS 10_1101-2020_01_28_923532 315 48 at at IN 10_1101-2020_01_28_923532 315 49 most most JJS 10_1101-2020_01_28_923532 315 50 1 1 CD 10_1101-2020_01_28_923532 315 51 target target NN 10_1101-2020_01_28_923532 315 52 receptor receptor NN 10_1101-2020_01_28_923532 315 53 larger large JJR 10_1101-2020_01_28_923532 315 54 than than IN 10_1101-2020_01_28_923532 315 55 the the DT 10_1101-2020_01_28_923532 315 56 optimal optimal JJ 10_1101-2020_01_28_923532 315 57 solutions solution NNS 10_1101-2020_01_28_923532 315 58 that that WDT 10_1101-2020_01_28_923532 315 59 would would MD 10_1101-2020_01_28_923532 315 60 have have VB 10_1101-2020_01_28_923532 315 61 been be VBN 10_1101-2020_01_28_923532 315 62 assigned assign VBN 10_1101-2020_01_28_923532 315 63 for for IN 10_1101-2020_01_28_923532 315 64 these these DT 10_1101-2020_01_28_923532 315 65 patients patient NNS 10_1101-2020_01_28_923532 315 66 based base VBN 10_1101-2020_01_28_923532 315 67 on on IN 10_1101-2020_01_28_923532 315 68 an an DT 10_1101-2020_01_28_923532 315 69 individual individual JJ 10_1101-2020_01_28_923532 315 70 - - HYPH 10_1101-2020_01_28_923532 315 71 centric centric NN 10_1101-2020_01_28_923532 315 72 policy policy NN 10_1101-2020_01_28_923532 315 73 ( ( -LRB- 10_1101-2020_01_28_923532 315 74 Figure Figure NNP 10_1101-2020_01_28_923532 315 75 6 6 CD 10_1101-2020_01_28_923532 315 76 , , , 10_1101-2020_01_28_923532 315 77 Supplementary Supplementary NNP 10_1101-2020_01_28_923532 315 78 Materials Materials NNP 10_1101-2020_01_28_923532 315 79 10 10 CD 10_1101-2020_01_28_923532 315 80 ) ) -RRB- 10_1101-2020_01_28_923532 315 81 . . . 10_1101-2020_01_28_923532 316 1 This this DT 10_1101-2020_01_28_923532 316 2 suggests suggest VBZ 10_1101-2020_01_28_923532 316 3 that that IN 10_1101-2020_01_28_923532 316 4 the the DT 10_1101-2020_01_28_923532 316 5 concern concern NN 10_1101-2020_01_28_923532 316 6 that that IN 10_1101-2020_01_28_923532 316 7 the the DT 10_1101-2020_01_28_923532 316 8 personalized personalized JJ 10_1101-2020_01_28_923532 316 9 treatment treatment NN 10_1101-2020_01_28_923532 316 10 for for IN 10_1101-2020_01_28_923532 316 11 any any DT 10_1101-2020_01_28_923532 316 12 individual individual NN 10_1101-2020_01_28_923532 316 13 will will MD 10_1101-2020_01_28_923532 316 14 be be VB 10_1101-2020_01_28_923532 316 15 suboptimal suboptimal VBN 10_1101-2020_01_28_923532 316 16 solely solely RB 10_1101-2020_01_28_923532 316 17 because because IN 10_1101-2020_01_28_923532 316 18 that that DT 10_1101-2020_01_28_923532 316 19 individual individual NN 10_1101-2020_01_28_923532 316 20 happens happen VBZ 10_1101-2020_01_28_923532 316 21 to to TO 10_1101-2020_01_28_923532 316 22 have have VB 10_1101-2020_01_28_923532 316 23 registered register VBN 10_1101-2020_01_28_923532 316 24 for for IN 10_1101-2020_01_28_923532 316 25 a a DT 10_1101-2020_01_28_923532 316 26 cohort cohort NN 10_1101-2020_01_28_923532 316 27 trial trial NN 10_1101-2020_01_28_923532 316 28 appears appear VBZ 10_1101-2020_01_28_923532 316 29 to to TO 10_1101-2020_01_28_923532 316 30 be be VB 10_1101-2020_01_28_923532 316 31 tightly tightly RB 10_1101-2020_01_28_923532 316 32 bounded bound VBN 10_1101-2020_01_28_923532 316 33 . . . 10_1101-2020_01_28_923532 317 1 Like like IN 10_1101-2020_01_28_923532 317 2 the the DT 10_1101-2020_01_28_923532 317 3 study study NN 10_1101-2020_01_28_923532 317 4 of of IN 10_1101-2020_01_28_923532 317 5 MacKay MacKay NNP 10_1101-2020_01_28_923532 317 6 et et NNP 10_1101-2020_01_28_923532 317 7 al.25 al.25 RB 10_1101-2020_01_28_923532 317 8 , , , 10_1101-2020_01_28_923532 317 9 our -PRON- PRP$ 10_1101-2020_01_28_923532 317 10 study study NN 10_1101-2020_01_28_923532 317 11 is be VBZ 10_1101-2020_01_28_923532 317 12 a a DT 10_1101-2020_01_28_923532 317 13 conceptual conceptual JJ 10_1101-2020_01_28_923532 317 14 computational computational JJ 10_1101-2020_01_28_923532 317 15 investigation investigation NN 10_1101-2020_01_28_923532 317 16 . . . 10_1101-2020_01_28_923532 318 1 We -PRON- PRP 10_1101-2020_01_28_923532 318 2 studied study VBD 10_1101-2020_01_28_923532 318 3 nine nine CD 10_1101-2020_01_28_923532 318 4 data datum NNS 10_1101-2020_01_28_923532 318 5 single single JJ 10_1101-2020_01_28_923532 318 6 - - HYPH 10_1101-2020_01_28_923532 318 7 cell cell NN 10_1101-2020_01_28_923532 318 8 expression expression NN 10_1101-2020_01_28_923532 318 9 data data NN 10_1101-2020_01_28_923532 318 10 sets set NNS 10_1101-2020_01_28_923532 318 11 for for IN 10_1101-2020_01_28_923532 318 12 the the DT 10_1101-2020_01_28_923532 318 13 first first JJ 10_1101-2020_01_28_923532 318 14 time time NN 10_1101-2020_01_28_923532 318 15 , , , 10_1101-2020_01_28_923532 318 16 but but CC 10_1101-2020_01_28_923532 318 17 it -PRON- PRP 10_1101-2020_01_28_923532 318 18 would would MD 10_1101-2020_01_28_923532 318 19 be be VB 10_1101-2020_01_28_923532 318 20 helpful helpful JJ 10_1101-2020_01_28_923532 318 21 to to IN 10_1101-2020_01_28_923532 318 22 105 105 CD 10_1101-2020_01_28_923532 318 23 and and CC 10_1101-2020_01_28_923532 318 24 is be VBZ 10_1101-2020_01_28_923532 318 25 also also RB 10_1101-2020_01_28_923532 318 26 made make VBN 10_1101-2020_01_28_923532 318 27 available available JJ 10_1101-2020_01_28_923532 318 28 for for IN 10_1101-2020_01_28_923532 318 29 use use NN 10_1101-2020_01_28_923532 318 30 under under IN 10_1101-2020_01_28_923532 318 31 a a DT 10_1101-2020_01_28_923532 318 32 CC0 CC0 NNP 10_1101-2020_01_28_923532 318 33 license license NN 10_1101-2020_01_28_923532 318 34 . . . 10_1101-2020_01_28_923532 319 1 ( ( -LRB- 10_1101-2020_01_28_923532 319 2 which which WDT 10_1101-2020_01_28_923532 319 3 was be VBD 10_1101-2020_01_28_923532 319 4 not not RB 10_1101-2020_01_28_923532 319 5 certified certify VBN 10_1101-2020_01_28_923532 319 6 by by IN 10_1101-2020_01_28_923532 319 7 peer peer NN 10_1101-2020_01_28_923532 319 8 review review NN 10_1101-2020_01_28_923532 319 9 ) ) -RRB- 10_1101-2020_01_28_923532 319 10 is be VBZ 10_1101-2020_01_28_923532 319 11 the the DT 10_1101-2020_01_28_923532 319 12 author author NN 10_1101-2020_01_28_923532 319 13 / / SYM 10_1101-2020_01_28_923532 319 14 funder funder NN 10_1101-2020_01_28_923532 319 15 . . . 10_1101-2020_01_28_923532 320 1 This this DT 10_1101-2020_01_28_923532 320 2 article article NN 10_1101-2020_01_28_923532 320 3 is be VBZ 10_1101-2020_01_28_923532 320 4 a a DT 10_1101-2020_01_28_923532 320 5 US US NNP 10_1101-2020_01_28_923532 320 6 Government Government NNP 10_1101-2020_01_28_923532 320 7 work work NN 10_1101-2020_01_28_923532 320 8 . . . 10_1101-2020_01_28_923532 321 1 It -PRON- PRP 10_1101-2020_01_28_923532 321 2 is be VBZ 10_1101-2020_01_28_923532 321 3 not not RB 10_1101-2020_01_28_923532 321 4 subject subject JJ 10_1101-2020_01_28_923532 321 5 to to IN 10_1101-2020_01_28_923532 321 6 copyright copyright NN 10_1101-2020_01_28_923532 321 7 under under IN 10_1101-2020_01_28_923532 321 8 17 17 CD 10_1101-2020_01_28_923532 321 9 USC usc NN 10_1101-2020_01_28_923532 321 10 The the DT 10_1101-2020_01_28_923532 321 11 copyright copyright NN 10_1101-2020_01_28_923532 321 12 holder holder NN 10_1101-2020_01_28_923532 321 13 for for IN 10_1101-2020_01_28_923532 321 14 this this DT 10_1101-2020_01_28_923532 321 15 preprintthis preprintthis NN 10_1101-2020_01_28_923532 321 16 version version NN 10_1101-2020_01_28_923532 321 17 posted post VBD 10_1101-2020_01_28_923532 321 18 February February NNP 10_1101-2020_01_28_923532 321 19 12 12 CD 10_1101-2020_01_28_923532 321 20 , , , 10_1101-2020_01_28_923532 321 21 2021 2021 CD 10_1101-2020_01_28_923532 321 22 . . . 10_1101-2020_01_28_923532 321 23 ; ; : 10_1101-2020_01_28_923532 321 24 https://doi.org/10.1101/2020.01.28.923532doi https://doi.org/10.1101/2020.01.28.923532doi ADD 10_1101-2020_01_28_923532 321 25 : : : 10_1101-2020_01_28_923532 321 26 bioRxiv biorxiv VB 10_1101-2020_01_28_923532 321 27 preprint preprint NN 10_1101-2020_01_28_923532 321 28 https://doi.org/10.1101/2020.01.28.923532 https://doi.org/10.1101/2020.01.28.923532 PRP 10_1101-2020_01_28_923532 321 29 26 26 CD 10_1101-2020_01_28_923532 321 30 analyze analyze VBP 10_1101-2020_01_28_923532 321 31 more more JJR 10_1101-2020_01_28_923532 321 32 and and CC 10_1101-2020_01_28_923532 321 33 larger large JJR 10_1101-2020_01_28_923532 321 34 data data NN 10_1101-2020_01_28_923532 321 35 sets set NNS 10_1101-2020_01_28_923532 321 36 in in IN 10_1101-2020_01_28_923532 321 37 the the DT 10_1101-2020_01_28_923532 321 38 future future NN 10_1101-2020_01_28_923532 321 39 . . . 10_1101-2020_01_28_923532 322 1 Even even RB 10_1101-2020_01_28_923532 322 2 among among IN 10_1101-2020_01_28_923532 322 3 four four CD 10_1101-2020_01_28_923532 322 4 data data NN 10_1101-2020_01_28_923532 322 5 sets set NNS 10_1101-2020_01_28_923532 322 6 of of IN 10_1101-2020_01_28_923532 322 7 the the DT 10_1101-2020_01_28_923532 322 8 same same JJ 10_1101-2020_01_28_923532 322 9 ( ( -LRB- 10_1101-2020_01_28_923532 322 10 brain brain NN 10_1101-2020_01_28_923532 322 11 ) ) -RRB- 10_1101-2020_01_28_923532 322 12 cancer cancer NN 10_1101-2020_01_28_923532 322 13 type type NN 10_1101-2020_01_28_923532 322 14 , , , 10_1101-2020_01_28_923532 322 15 we -PRON- PRP 10_1101-2020_01_28_923532 322 16 observed observe VBD 10_1101-2020_01_28_923532 322 17 considerable considerable JJ 10_1101-2020_01_28_923532 322 18 variability variability NN 10_1101-2020_01_28_923532 322 19 in in IN 10_1101-2020_01_28_923532 322 20 CTS CTS NNP 10_1101-2020_01_28_923532 322 21 and and CC 10_1101-2020_01_28_923532 322 22 ITS its PRP$ 10_1101-2020_01_28_923532 322 23 sizes size NNS 10_1101-2020_01_28_923532 322 24 . . . 10_1101-2020_01_28_923532 323 1 Since since IN 10_1101-2020_01_28_923532 323 2 our -PRON- PRP$ 10_1101-2020_01_28_923532 323 3 approach approach NN 10_1101-2020_01_28_923532 323 4 is be VBZ 10_1101-2020_01_28_923532 323 5 general general JJ 10_1101-2020_01_28_923532 323 6 and and CC 10_1101-2020_01_28_923532 323 7 the the DT 10_1101-2020_01_28_923532 323 8 software software NN 10_1101-2020_01_28_923532 323 9 is be VBZ 10_1101-2020_01_28_923532 323 10 freely freely RB 10_1101-2020_01_28_923532 323 11 available available JJ 10_1101-2020_01_28_923532 323 12 as as IN 10_1101-2020_01_28_923532 323 13 source source NN 10_1101-2020_01_28_923532 323 14 code code NN 10_1101-2020_01_28_923532 323 15 , , , 10_1101-2020_01_28_923532 323 16 other other JJ 10_1101-2020_01_28_923532 323 17 researchers researcher NNS 10_1101-2020_01_28_923532 323 18 can can MD 10_1101-2020_01_28_923532 323 19 test test VB 10_1101-2020_01_28_923532 323 20 the the DT 10_1101-2020_01_28_923532 323 21 method method NN 10_1101-2020_01_28_923532 323 22 on on IN 10_1101-2020_01_28_923532 323 23 new new JJ 10_1101-2020_01_28_923532 323 24 data data NN 10_1101-2020_01_28_923532 323 25 sets set NNS 10_1101-2020_01_28_923532 323 26 or or CC 10_1101-2020_01_28_923532 323 27 add add VB 10_1101-2020_01_28_923532 323 28 new new JJ 10_1101-2020_01_28_923532 323 29 variables variable NNS 10_1101-2020_01_28_923532 323 30 , , , 10_1101-2020_01_28_923532 323 31 constraints constraint NNS 10_1101-2020_01_28_923532 323 32 , , , 10_1101-2020_01_28_923532 323 33 and and CC 10_1101-2020_01_28_923532 323 34 optimality optimality NN 10_1101-2020_01_28_923532 323 35 criteria criterion NNS 10_1101-2020_01_28_923532 323 36 . . . 10_1101-2020_01_28_923532 324 1 These these DT 10_1101-2020_01_28_923532 324 2 investigations investigation NNS 10_1101-2020_01_28_923532 324 3 may may MD 10_1101-2020_01_28_923532 324 4 of of IN 10_1101-2020_01_28_923532 324 5 course course NN 10_1101-2020_01_28_923532 324 6 lead lead VB 10_1101-2020_01_28_923532 324 7 other other JJ 10_1101-2020_01_28_923532 324 8 to to TO 10_1101-2020_01_28_923532 324 9 further further RB 10_1101-2020_01_28_923532 324 10 improve improve VB 10_1101-2020_01_28_923532 324 11 our -PRON- PRP$ 10_1101-2020_01_28_923532 324 12 method method NN 10_1101-2020_01_28_923532 324 13 and and CC 10_1101-2020_01_28_923532 324 14 broaden broaden VB 10_1101-2020_01_28_923532 324 15 its -PRON- PRP$ 10_1101-2020_01_28_923532 324 16 applicability applicability NN 10_1101-2020_01_28_923532 324 17 . . . 10_1101-2020_01_28_923532 325 1 In in IN 10_1101-2020_01_28_923532 325 2 future future JJ 10_1101-2020_01_28_923532 325 3 work work NN 10_1101-2020_01_28_923532 325 4 , , , 10_1101-2020_01_28_923532 325 5 we -PRON- PRP 10_1101-2020_01_28_923532 325 6 plan plan VBP 10_1101-2020_01_28_923532 325 7 to to TO 10_1101-2020_01_28_923532 325 8 apply apply VB 10_1101-2020_01_28_923532 325 9 our -PRON- PRP$ 10_1101-2020_01_28_923532 325 10 approach approach NN 10_1101-2020_01_28_923532 325 11 to to TO 10_1101-2020_01_28_923532 325 12 study study VB 10_1101-2020_01_28_923532 325 13 ways way NNS 10_1101-2020_01_28_923532 325 14 for for IN 10_1101-2020_01_28_923532 325 15 selectively selectively RB 10_1101-2020_01_28_923532 325 16 killing kill VBG 10_1101-2020_01_28_923532 325 17 specific specific JJ 10_1101-2020_01_28_923532 325 18 populations population NNS 10_1101-2020_01_28_923532 325 19 of of IN 10_1101-2020_01_28_923532 325 20 immune immune JJ 10_1101-2020_01_28_923532 325 21 cells cell NNS 10_1101-2020_01_28_923532 325 22 , , , 10_1101-2020_01_28_923532 325 23 such such JJ 10_1101-2020_01_28_923532 325 24 as as IN 10_1101-2020_01_28_923532 325 25 myeloid myeloid JJ 10_1101-2020_01_28_923532 325 26 - - HYPH 10_1101-2020_01_28_923532 325 27 derived derive VBN 10_1101-2020_01_28_923532 325 28 suppressor suppressor NN 10_1101-2020_01_28_923532 325 29 cells cell NNS 10_1101-2020_01_28_923532 325 30 , , , 10_1101-2020_01_28_923532 325 31 because because IN 10_1101-2020_01_28_923532 325 32 they -PRON- PRP 10_1101-2020_01_28_923532 325 33 inhibit inhibit VBP 10_1101-2020_01_28_923532 325 34 tumor tumor NN 10_1101-2020_01_28_923532 325 35 killing killing NN 10_1101-2020_01_28_923532 325 36 , , , 10_1101-2020_01_28_923532 325 37 while while IN 10_1101-2020_01_28_923532 325 38 sparing spare VBG 10_1101-2020_01_28_923532 325 39 most most JJS 10_1101-2020_01_28_923532 325 40 other other JJ 10_1101-2020_01_28_923532 325 41 non non JJ 10_1101-2020_01_28_923532 325 42 - - JJ 10_1101-2020_01_28_923532 325 43 cancer cancer JJ 10_1101-2020_01_28_923532 325 44 cells cell NNS 10_1101-2020_01_28_923532 325 45 . . . 10_1101-2020_01_28_923532 326 1 We -PRON- PRP 10_1101-2020_01_28_923532 326 2 compared compare VBD 10_1101-2020_01_28_923532 326 3 gene gene NN 10_1101-2020_01_28_923532 326 4 expression expression NN 10_1101-2020_01_28_923532 326 5 levels level NNS 10_1101-2020_01_28_923532 326 6 between between IN 10_1101-2020_01_28_923532 326 7 non non JJ 10_1101-2020_01_28_923532 326 8 - - JJ 10_1101-2020_01_28_923532 326 9 cancer cancer JJ 10_1101-2020_01_28_923532 326 10 cells cell NNS 10_1101-2020_01_28_923532 326 11 and and CC 10_1101-2020_01_28_923532 326 12 cancer cancer NN 10_1101-2020_01_28_923532 326 13 cells cell NNS 10_1101-2020_01_28_923532 326 14 sampled sample VBN 10_1101-2020_01_28_923532 326 15 from from IN 10_1101-2020_01_28_923532 326 16 the the DT 10_1101-2020_01_28_923532 326 17 same same JJ 10_1101-2020_01_28_923532 326 18 patient patient NN 10_1101-2020_01_28_923532 326 19 , , , 10_1101-2020_01_28_923532 326 20 which which WDT 10_1101-2020_01_28_923532 326 21 avoids avoid VBZ 10_1101-2020_01_28_923532 326 22 inter inter JJ 10_1101-2020_01_28_923532 326 23 - - JJ 10_1101-2020_01_28_923532 326 24 patient patient JJ 10_1101-2020_01_28_923532 326 25 expression expression NN 10_1101-2020_01_28_923532 326 26 variability53 variability53 NN 10_1101-2020_01_28_923532 326 27 . . . 10_1101-2020_01_28_923532 327 1 However however RB 10_1101-2020_01_28_923532 327 2 , , , 10_1101-2020_01_28_923532 327 3 we -PRON- PRP 10_1101-2020_01_28_923532 327 4 did do VBD 10_1101-2020_01_28_923532 327 5 little little JJ 10_1101-2020_01_28_923532 327 6 to to TO 10_1101-2020_01_28_923532 327 7 account account VB 10_1101-2020_01_28_923532 327 8 for for IN 10_1101-2020_01_28_923532 327 9 “ " `` 10_1101-2020_01_28_923532 327 10 expression expression NN 10_1101-2020_01_28_923532 327 11 dropout dropout NN 10_1101-2020_01_28_923532 327 12 ” " '' 10_1101-2020_01_28_923532 327 13 beyond beyond IN 10_1101-2020_01_28_923532 327 14 the the DT 10_1101-2020_01_28_923532 327 15 normalization normalization NN 10_1101-2020_01_28_923532 327 16 performed perform VBN 10_1101-2020_01_28_923532 327 17 by by IN 10_1101-2020_01_28_923532 327 18 the the DT 10_1101-2020_01_28_923532 327 19 providers provider NNS 10_1101-2020_01_28_923532 327 20 of of IN 10_1101-2020_01_28_923532 327 21 the the DT 10_1101-2020_01_28_923532 327 22 data data NN 10_1101-2020_01_28_923532 327 23 sets set NNS 10_1101-2020_01_28_923532 327 24 , , , 10_1101-2020_01_28_923532 327 25 aiming aim VBG 10_1101-2020_01_28_923532 327 26 to to TO 10_1101-2020_01_28_923532 327 27 preserve preserve VB 10_1101-2020_01_28_923532 327 28 the the DT 10_1101-2020_01_28_923532 327 29 public public JJ 10_1101-2020_01_28_923532 327 30 data datum NNS 10_1101-2020_01_28_923532 327 31 as as IN 10_1101-2020_01_28_923532 327 32 it -PRON- PRP 10_1101-2020_01_28_923532 327 33 was be VBD 10_1101-2020_01_28_923532 327 34 submitted submit VBN 10_1101-2020_01_28_923532 327 35 to to IN 10_1101-2020_01_28_923532 327 36 GEO GEO NNP 10_1101-2020_01_28_923532 327 37 or or CC 10_1101-2020_01_28_923532 327 38 Array Array NNP 10_1101-2020_01_28_923532 327 39 Express Express NNP 10_1101-2020_01_28_923532 327 40 . . . 10_1101-2020_01_28_923532 328 1 To to TO 10_1101-2020_01_28_923532 328 2 achieve achieve VB 10_1101-2020_01_28_923532 328 3 some some DT 10_1101-2020_01_28_923532 328 4 uniformity uniformity NN 10_1101-2020_01_28_923532 328 5 and and CC 10_1101-2020_01_28_923532 328 6 also also RB 10_1101-2020_01_28_923532 328 7 to to TO 10_1101-2020_01_28_923532 328 8 take take VB 10_1101-2020_01_28_923532 328 9 as as RB 10_1101-2020_01_28_923532 328 10 cautious cautious JJ 10_1101-2020_01_28_923532 328 11 an an DT 10_1101-2020_01_28_923532 328 12 approach approach NN 10_1101-2020_01_28_923532 328 13 as as IN 10_1101-2020_01_28_923532 328 14 possible possible JJ 10_1101-2020_01_28_923532 328 15 , , , 10_1101-2020_01_28_923532 328 16 we -PRON- PRP 10_1101-2020_01_28_923532 328 17 added add VBD 10_1101-2020_01_28_923532 328 18 a a DT 10_1101-2020_01_28_923532 328 19 step step NN 10_1101-2020_01_28_923532 328 20 to to TO 10_1101-2020_01_28_923532 328 21 filter filter VB 10_1101-2020_01_28_923532 328 22 low low JJ 10_1101-2020_01_28_923532 328 23 expressing express VBG 10_1101-2020_01_28_923532 328 24 cells cell NNS 10_1101-2020_01_28_923532 328 25 because because IN 10_1101-2020_01_28_923532 328 26 some some DT 10_1101-2020_01_28_923532 328 27 data data NN 10_1101-2020_01_28_923532 328 28 sets set NNS 10_1101-2020_01_28_923532 328 29 had have VBD 10_1101-2020_01_28_923532 328 30 already already RB 10_1101-2020_01_28_923532 328 31 been be VBN 10_1101-2020_01_28_923532 328 32 filtered filter VBN 10_1101-2020_01_28_923532 328 33 in in IN 10_1101-2020_01_28_923532 328 34 this this DT 10_1101-2020_01_28_923532 328 35 way way NN 10_1101-2020_01_28_923532 328 36 . . . 10_1101-2020_01_28_923532 329 1 One one PRP 10_1101-2020_01_28_923532 329 2 could could MD 10_1101-2020_01_28_923532 329 3 instead instead RB 10_1101-2020_01_28_923532 329 4 apply apply VB 10_1101-2020_01_28_923532 329 5 imputation imputation NN 10_1101-2020_01_28_923532 329 6 methods method NNS 10_1101-2020_01_28_923532 329 7 such such JJ 10_1101-2020_01_28_923532 329 8 as as IN 10_1101-2020_01_28_923532 329 9 MAGIC54 MAGIC54 NNP 10_1101-2020_01_28_923532 329 10 or or CC 10_1101-2020_01_28_923532 329 11 scImpute55 scImpute55 NNP 10_1101-2020_01_28_923532 329 12 to to TO 10_1101-2020_01_28_923532 329 13 infer infer VB 10_1101-2020_01_28_923532 329 14 denser denser NN 10_1101-2020_01_28_923532 329 15 gene gene NNP 10_1101-2020_01_28_923532 329 16 expression expression NN 10_1101-2020_01_28_923532 329 17 matrices matrix NNS 10_1101-2020_01_28_923532 329 18 and and CC 10_1101-2020_01_28_923532 329 19 then then RB 10_1101-2020_01_28_923532 329 20 apply apply VB 10_1101-2020_01_28_923532 329 21 our -PRON- PRP$ 10_1101-2020_01_28_923532 329 22 method method NN 10_1101-2020_01_28_923532 329 23 to to IN 10_1101-2020_01_28_923532 329 24 the the DT 10_1101-2020_01_28_923532 329 25 adjusted adjust VBN 10_1101-2020_01_28_923532 329 26 input input NN 10_1101-2020_01_28_923532 329 27 data datum NNS 10_1101-2020_01_28_923532 329 28 . . . 10_1101-2020_01_28_923532 330 1 Therefore therefore RB 10_1101-2020_01_28_923532 330 2 , , , 10_1101-2020_01_28_923532 330 3 our -PRON- PRP$ 10_1101-2020_01_28_923532 330 4 results result NNS 10_1101-2020_01_28_923532 330 5 about about IN 10_1101-2020_01_28_923532 330 6 the the DT 10_1101-2020_01_28_923532 330 7 sizes size NNS 10_1101-2020_01_28_923532 330 8 of of IN 10_1101-2020_01_28_923532 330 9 optimal optimal JJ 10_1101-2020_01_28_923532 330 10 ITS its PRP$ 10_1101-2020_01_28_923532 330 11 should should MD 10_1101-2020_01_28_923532 330 12 be be VB 10_1101-2020_01_28_923532 330 13 viewed view VBN 10_1101-2020_01_28_923532 330 14 as as IN 10_1101-2020_01_28_923532 330 15 estimated estimate VBN 10_1101-2020_01_28_923532 330 16 upper upper JJ 10_1101-2020_01_28_923532 330 17 bounds bound NNS 10_1101-2020_01_28_923532 330 18 that that WDT 10_1101-2020_01_28_923532 330 19 are be VBP 10_1101-2020_01_28_923532 330 20 likely likely JJ 10_1101-2020_01_28_923532 330 21 to to TO 10_1101-2020_01_28_923532 330 22 decrease decrease VB 10_1101-2020_01_28_923532 330 23 if if IN 10_1101-2020_01_28_923532 330 24 the the DT 10_1101-2020_01_28_923532 330 25 dropout dropout NN 10_1101-2020_01_28_923532 330 26 rate rate NN 10_1101-2020_01_28_923532 330 27 decreases decrease VBZ 10_1101-2020_01_28_923532 330 28 or or CC 10_1101-2020_01_28_923532 330 29 if if IN 10_1101-2020_01_28_923532 330 30 cells cell NNS 10_1101-2020_01_28_923532 330 31 expressing express VBG 10_1101-2020_01_28_923532 330 32 few few JJ 10_1101-2020_01_28_923532 330 33 genes gene NNS 10_1101-2020_01_28_923532 330 34 are be VBP 10_1101-2020_01_28_923532 330 35 eliminated eliminate VBN 10_1101-2020_01_28_923532 330 36 from from IN 10_1101-2020_01_28_923532 330 37 the the DT 10_1101-2020_01_28_923532 330 38 analysis analysis NN 10_1101-2020_01_28_923532 330 39 more more RBR 10_1101-2020_01_28_923532 330 40 stringently stringently RB 10_1101-2020_01_28_923532 330 41 . . . 10_1101-2020_01_28_923532 331 1 Another another DT 10_1101-2020_01_28_923532 331 2 limitation limitation NN 10_1101-2020_01_28_923532 331 3 of of IN 10_1101-2020_01_28_923532 331 4 our -PRON- PRP$ 10_1101-2020_01_28_923532 331 5 method method NN 10_1101-2020_01_28_923532 331 6 is be VBZ 10_1101-2020_01_28_923532 331 7 that that IN 10_1101-2020_01_28_923532 331 8 we -PRON- PRP 10_1101-2020_01_28_923532 331 9 viewed view VBD 10_1101-2020_01_28_923532 331 10 the the DT 10_1101-2020_01_28_923532 331 11 measured measure VBN 10_1101-2020_01_28_923532 331 12 gene gene NN 10_1101-2020_01_28_923532 331 13 expression expression NN 10_1101-2020_01_28_923532 331 14 as as IN 10_1101-2020_01_28_923532 331 15 being be VBG 10_1101-2020_01_28_923532 331 16 valid valid JJ 10_1101-2020_01_28_923532 331 17 over over IN 10_1101-2020_01_28_923532 331 18 all all DT 10_1101-2020_01_28_923532 331 19 time time NN 10_1101-2020_01_28_923532 331 20 , , , 10_1101-2020_01_28_923532 331 21 even even RB 10_1101-2020_01_28_923532 331 22 though though IN 10_1101-2020_01_28_923532 331 23 gene gene NN 10_1101-2020_01_28_923532 331 24 expression expression NN 10_1101-2020_01_28_923532 331 25 is be VBZ 10_1101-2020_01_28_923532 331 26 known know VBN 10_1101-2020_01_28_923532 331 27 to to TO 10_1101-2020_01_28_923532 331 28 be be VB 10_1101-2020_01_28_923532 331 29 a a DT 10_1101-2020_01_28_923532 331 30 stochastic stochastic JJ 10_1101-2020_01_28_923532 331 31 process56 process56 NN 10_1101-2020_01_28_923532 331 32 . . . 10_1101-2020_01_28_923532 332 1 In in IN 10_1101-2020_01_28_923532 332 2 the the DT 10_1101-2020_01_28_923532 332 3 future future NN 10_1101-2020_01_28_923532 332 4 , , , 10_1101-2020_01_28_923532 332 5 we -PRON- PRP 10_1101-2020_01_28_923532 332 6 would would MD 10_1101-2020_01_28_923532 332 7 like like VB 10_1101-2020_01_28_923532 332 8 to to TO 10_1101-2020_01_28_923532 332 9 extend extend VB 10_1101-2020_01_28_923532 332 10 our -PRON- PRP$ 10_1101-2020_01_28_923532 332 11 approach approach NN 10_1101-2020_01_28_923532 332 12 to to TO 10_1101-2020_01_28_923532 332 13 use use VB 10_1101-2020_01_28_923532 332 14 the the DT 10_1101-2020_01_28_923532 332 15 single single JJ 10_1101-2020_01_28_923532 332 16 - - HYPH 10_1101-2020_01_28_923532 332 17 cell cell NN 10_1101-2020_01_28_923532 332 18 data datum NNS 10_1101-2020_01_28_923532 332 19 to to TO 10_1101-2020_01_28_923532 332 20 infer infer VB 10_1101-2020_01_28_923532 332 21 how how WRB 10_1101-2020_01_28_923532 332 22 stochastic stochastic JJ 10_1101-2020_01_28_923532 332 23 is be VBZ 10_1101-2020_01_28_923532 332 24 the the DT 10_1101-2020_01_28_923532 332 25 expression expression NN 10_1101-2020_01_28_923532 332 26 of of IN 10_1101-2020_01_28_923532 332 27 each each DT 10_1101-2020_01_28_923532 332 28 gene57 gene57 NN 10_1101-2020_01_28_923532 332 29 and and CC 10_1101-2020_01_28_923532 332 30 to to TO 10_1101-2020_01_28_923532 332 31 prefer prefer VB 10_1101-2020_01_28_923532 332 32 targets target NNS 10_1101-2020_01_28_923532 332 33 whose whose WP$ 10_1101-2020_01_28_923532 332 34 expression expression NN 10_1101-2020_01_28_923532 332 35 is be VBZ 10_1101-2020_01_28_923532 332 36 more more RBR 10_1101-2020_01_28_923532 332 37 stable stable JJ 10_1101-2020_01_28_923532 332 38 . . . 10_1101-2020_01_28_923532 333 1 Even even RB 10_1101-2020_01_28_923532 333 2 though though IN 10_1101-2020_01_28_923532 333 3 the the DT 10_1101-2020_01_28_923532 333 4 combinatorial combinatorial JJ 10_1101-2020_01_28_923532 333 5 optimization optimization NN 10_1101-2020_01_28_923532 333 6 problems problem NNS 10_1101-2020_01_28_923532 333 7 solved solve VBN 10_1101-2020_01_28_923532 333 8 here here RB 10_1101-2020_01_28_923532 333 9 are be VBP 10_1101-2020_01_28_923532 333 10 in in IN 10_1101-2020_01_28_923532 333 11 the the DT 10_1101-2020_01_28_923532 333 12 worst bad JJS 10_1101-2020_01_28_923532 333 13 - - HYPH 10_1101-2020_01_28_923532 333 14 case case NN 10_1101-2020_01_28_923532 333 15 exponentially exponentially RB 10_1101-2020_01_28_923532 333 16 hard hard RB 10_1101-2020_01_28_923532 333 17 ( ( -LRB- 10_1101-2020_01_28_923532 333 18 NP NP NNP 10_1101-2020_01_28_923532 333 19 - - HYPH 10_1101-2020_01_28_923532 333 20 complete36 complete36 RB 10_1101-2020_01_28_923532 333 21 in in IN 10_1101-2020_01_28_923532 333 22 computer computer NN 10_1101-2020_01_28_923532 333 23 science science NN 10_1101-2020_01_28_923532 333 24 terminology terminology NN 10_1101-2020_01_28_923532 333 25 ) ) -RRB- 10_1101-2020_01_28_923532 333 26 , , , 10_1101-2020_01_28_923532 333 27 the the DT 10_1101-2020_01_28_923532 333 28 actual actual JJ 10_1101-2020_01_28_923532 333 29 instances instance NNS 10_1101-2020_01_28_923532 333 30 that that WDT 10_1101-2020_01_28_923532 333 31 arise arise VBP 10_1101-2020_01_28_923532 333 32 from from IN 10_1101-2020_01_28_923532 333 33 the the DT 10_1101-2020_01_28_923532 333 34 single single JJ 10_1101-2020_01_28_923532 333 35 - - HYPH 10_1101-2020_01_28_923532 333 36 cell cell NN 10_1101-2020_01_28_923532 333 37 data datum NNS 10_1101-2020_01_28_923532 333 38 could could MD 10_1101-2020_01_28_923532 333 39 be be VB 10_1101-2020_01_28_923532 333 40 either either CC 10_1101-2020_01_28_923532 333 41 formally formally RB 10_1101-2020_01_28_923532 333 42 solved solve VBN 10_1101-2020_01_28_923532 333 43 to to IN 10_1101-2020_01_28_923532 333 44 optimality optimality NN 10_1101-2020_01_28_923532 333 45 or or CC 10_1101-2020_01_28_923532 333 46 shown show VBN 10_1101-2020_01_28_923532 333 47 to to TO 10_1101-2020_01_28_923532 333 48 be be VB 10_1101-2020_01_28_923532 333 49 infeasible infeasible JJ 10_1101-2020_01_28_923532 333 50 with with IN 10_1101-2020_01_28_923532 333 51 modern modern JJ 10_1101-2020_01_28_923532 333 52 optimization optimization NN 10_1101-2020_01_28_923532 333 53 software software NN 10_1101-2020_01_28_923532 333 54 . . . 10_1101-2020_01_28_923532 334 1 Of of IN 10_1101-2020_01_28_923532 334 2 note note NN 10_1101-2020_01_28_923532 334 3 , , , 10_1101-2020_01_28_923532 334 4 Delaney Delaney NNP 10_1101-2020_01_28_923532 334 5 et et FW 10_1101-2020_01_28_923532 334 6 al al NNP 10_1101-2020_01_28_923532 334 7 . . NNP 10_1101-2020_01_28_923532 334 8 , , , 10_1101-2020_01_28_923532 334 9 have have VBP 10_1101-2020_01_28_923532 334 10 recently recently RB 10_1101-2020_01_28_923532 334 11 formalized formalize VBN 10_1101-2020_01_28_923532 334 12 a a DT 10_1101-2020_01_28_923532 334 13 related related JJ 10_1101-2020_01_28_923532 334 14 optimization optimization NN 10_1101-2020_01_28_923532 334 15 problem problem NN 10_1101-2020_01_28_923532 334 16 in in IN 10_1101-2020_01_28_923532 334 17 analysis analysis NN 10_1101-2020_01_28_923532 334 18 of of IN 10_1101-2020_01_28_923532 334 19 single single JJ 10_1101-2020_01_28_923532 334 20 - - HYPH 10_1101-2020_01_28_923532 334 21 cell cell NN 10_1101-2020_01_28_923532 334 22 clustered cluster VBN 10_1101-2020_01_28_923532 334 23 data datum NNS 10_1101-2020_01_28_923532 334 24 for for IN 10_1101-2020_01_28_923532 334 25 immunology38 immunology38 NN 10_1101-2020_01_28_923532 334 26 . . . 10_1101-2020_01_28_923532 335 1 Their -PRON- PRP$ 10_1101-2020_01_28_923532 335 2 optimization optimization NN 10_1101-2020_01_28_923532 335 3 problem problem NN 10_1101-2020_01_28_923532 335 4 is be VBZ 10_1101-2020_01_28_923532 335 5 also also RB 10_1101-2020_01_28_923532 335 6 NP NP NNP 10_1101-2020_01_28_923532 335 7 - - HYPH 10_1101-2020_01_28_923532 335 8 complete complete JJ 10_1101-2020_01_28_923532 335 9 in in IN 10_1101-2020_01_28_923532 335 10 the the DT 10_1101-2020_01_28_923532 335 11 worst bad JJS 10_1101-2020_01_28_923532 335 12 case case NN 10_1101-2020_01_28_923532 335 13 and and CC 10_1101-2020_01_28_923532 335 14 they -PRON- PRP 10_1101-2020_01_28_923532 335 15 could could MD 10_1101-2020_01_28_923532 335 16 solve solve VB 10_1101-2020_01_28_923532 335 17 sets set NNS 10_1101-2020_01_28_923532 335 18 of of IN 10_1101-2020_01_28_923532 335 19 up up IN 10_1101-2020_01_28_923532 335 20 to to TO 10_1101-2020_01_28_923532 335 21 size size VB 10_1101-2020_01_28_923532 335 22 four four CD 10_1101-2020_01_28_923532 335 23 using use VBG 10_1101-2020_01_28_923532 335 24 heuristic heuristic JJ 10_1101-2020_01_28_923532 335 25 methods38 methods38 NN 10_1101-2020_01_28_923532 335 26 . . . 10_1101-2020_01_28_923532 336 1 We -PRON- PRP 10_1101-2020_01_28_923532 336 2 have have VBP 10_1101-2020_01_28_923532 336 3 shown show VBN 10_1101-2020_01_28_923532 336 4 that that IN 10_1101-2020_01_28_923532 336 5 the the DT 10_1101-2020_01_28_923532 336 6 optimal optimal JJ 10_1101-2020_01_28_923532 336 7 ILP ILP NNP 10_1101-2020_01_28_923532 336 8 solutions solution NNS 10_1101-2020_01_28_923532 336 9 we -PRON- PRP 10_1101-2020_01_28_923532 336 10 obtained obtain VBD 10_1101-2020_01_28_923532 336 11 105 105 CD 10_1101-2020_01_28_923532 336 12 and and CC 10_1101-2020_01_28_923532 336 13 is be VBZ 10_1101-2020_01_28_923532 336 14 also also RB 10_1101-2020_01_28_923532 336 15 made make VBN 10_1101-2020_01_28_923532 336 16 available available JJ 10_1101-2020_01_28_923532 336 17 for for IN 10_1101-2020_01_28_923532 336 18 use use NN 10_1101-2020_01_28_923532 336 19 under under IN 10_1101-2020_01_28_923532 336 20 a a DT 10_1101-2020_01_28_923532 336 21 CC0 CC0 NNP 10_1101-2020_01_28_923532 336 22 license license NN 10_1101-2020_01_28_923532 336 23 . . . 10_1101-2020_01_28_923532 337 1 ( ( -LRB- 10_1101-2020_01_28_923532 337 2 which which WDT 10_1101-2020_01_28_923532 337 3 was be VBD 10_1101-2020_01_28_923532 337 4 not not RB 10_1101-2020_01_28_923532 337 5 certified certify VBN 10_1101-2020_01_28_923532 337 6 by by IN 10_1101-2020_01_28_923532 337 7 peer peer NN 10_1101-2020_01_28_923532 337 8 review review NN 10_1101-2020_01_28_923532 337 9 ) ) -RRB- 10_1101-2020_01_28_923532 337 10 is be VBZ 10_1101-2020_01_28_923532 337 11 the the DT 10_1101-2020_01_28_923532 337 12 author author NN 10_1101-2020_01_28_923532 337 13 / / SYM 10_1101-2020_01_28_923532 337 14 funder funder NN 10_1101-2020_01_28_923532 337 15 . . . 10_1101-2020_01_28_923532 338 1 This this DT 10_1101-2020_01_28_923532 338 2 article article NN 10_1101-2020_01_28_923532 338 3 is be VBZ 10_1101-2020_01_28_923532 338 4 a a DT 10_1101-2020_01_28_923532 338 5 US US NNP 10_1101-2020_01_28_923532 338 6 Government Government NNP 10_1101-2020_01_28_923532 338 7 work work NN 10_1101-2020_01_28_923532 338 8 . . . 10_1101-2020_01_28_923532 339 1 It -PRON- PRP 10_1101-2020_01_28_923532 339 2 is be VBZ 10_1101-2020_01_28_923532 339 3 not not RB 10_1101-2020_01_28_923532 339 4 subject subject JJ 10_1101-2020_01_28_923532 339 5 to to IN 10_1101-2020_01_28_923532 339 6 copyright copyright NN 10_1101-2020_01_28_923532 339 7 under under IN 10_1101-2020_01_28_923532 339 8 17 17 CD 10_1101-2020_01_28_923532 339 9 USC usc NN 10_1101-2020_01_28_923532 339 10 The the DT 10_1101-2020_01_28_923532 339 11 copyright copyright NN 10_1101-2020_01_28_923532 339 12 holder holder NN 10_1101-2020_01_28_923532 339 13 for for IN 10_1101-2020_01_28_923532 339 14 this this DT 10_1101-2020_01_28_923532 339 15 preprintthis preprintthis NN 10_1101-2020_01_28_923532 339 16 version version NN 10_1101-2020_01_28_923532 339 17 posted post VBD 10_1101-2020_01_28_923532 339 18 February February NNP 10_1101-2020_01_28_923532 339 19 12 12 CD 10_1101-2020_01_28_923532 339 20 , , , 10_1101-2020_01_28_923532 339 21 2021 2021 CD 10_1101-2020_01_28_923532 339 22 . . . 10_1101-2020_01_28_923532 339 23 ; ; : 10_1101-2020_01_28_923532 339 24 https://doi.org/10.1101/2020.01.28.923532doi https://doi.org/10.1101/2020.01.28.923532doi ADD 10_1101-2020_01_28_923532 339 25 : : : 10_1101-2020_01_28_923532 339 26 bioRxiv biorxiv VB 10_1101-2020_01_28_923532 339 27 preprint preprint NN 10_1101-2020_01_28_923532 339 28 https://doi.org/10.1101/2020.01.28.923532 https://doi.org/10.1101/2020.01.28.923532 UH 10_1101-2020_01_28_923532 339 29 27 27 CD 10_1101-2020_01_28_923532 339 30 are be VBP 10_1101-2020_01_28_923532 339 31 often often RB 10_1101-2020_01_28_923532 339 32 substantially substantially RB 10_1101-2020_01_28_923532 339 33 smaller small JJR 10_1101-2020_01_28_923532 339 34 than than IN 10_1101-2020_01_28_923532 339 35 solutions solution NNS 10_1101-2020_01_28_923532 339 36 obtained obtain VBN 10_1101-2020_01_28_923532 339 37 via via IN 10_1101-2020_01_28_923532 339 38 a a DT 10_1101-2020_01_28_923532 339 39 greedy greedy JJ 10_1101-2020_01_28_923532 339 40 heuristic heuristic JJ 10_1101-2020_01_28_923532 339 41 ( ( -LRB- 10_1101-2020_01_28_923532 339 42 Figure figure NN 10_1101-2020_01_28_923532 339 43 4 4 CD 10_1101-2020_01_28_923532 339 44 , , , 10_1101-2020_01_28_923532 339 45 Supplementary Supplementary NNP 10_1101-2020_01_28_923532 339 46 Materials Materials NNP 10_1101-2020_01_28_923532 339 47 8 8 CD 10_1101-2020_01_28_923532 339 48 including include VBG 10_1101-2020_01_28_923532 339 49 Table Table NNP 10_1101-2020_01_28_923532 339 50 S2 S2 NNP 10_1101-2020_01_28_923532 339 51 ) ) -RRB- 10_1101-2020_01_28_923532 339 52 . . . 10_1101-2020_01_28_923532 340 1 On on IN 10_1101-2020_01_28_923532 340 2 the the DT 10_1101-2020_01_28_923532 340 3 cautionary cautionary JJ 10_1101-2020_01_28_923532 340 4 side side NN 10_1101-2020_01_28_923532 340 5 , , , 10_1101-2020_01_28_923532 340 6 experiments experiment NNS 10_1101-2020_01_28_923532 340 7 with with IN 10_1101-2020_01_28_923532 340 8 target target NN 10_1101-2020_01_28_923532 340 9 gene gene NN 10_1101-2020_01_28_923532 340 10 sets set NNS 10_1101-2020_01_28_923532 340 11 that that WDT 10_1101-2020_01_28_923532 340 12 were be VBD 10_1101-2020_01_28_923532 340 13 further further RB 10_1101-2020_01_28_923532 340 14 filtered filter VBN 10_1101-2020_01_28_923532 340 15 by by IN 10_1101-2020_01_28_923532 340 16 low low JJ 10_1101-2020_01_28_923532 340 17 expression expression NN 10_1101-2020_01_28_923532 340 18 in in IN 10_1101-2020_01_28_923532 340 19 normal normal JJ 10_1101-2020_01_28_923532 340 20 tissues tissue NNS 10_1101-2020_01_28_923532 340 21 showed show VBD 10_1101-2020_01_28_923532 340 22 that that IN 10_1101-2020_01_28_923532 340 23 the the DT 10_1101-2020_01_28_923532 340 24 individual individual JJ 10_1101-2020_01_28_923532 340 25 target target NN 10_1101-2020_01_28_923532 340 26 set set VBN 10_1101-2020_01_28_923532 340 27 problem problem NN 10_1101-2020_01_28_923532 340 28 can can MD 10_1101-2020_01_28_923532 340 29 become become VB 10_1101-2020_01_28_923532 340 30 infeasible infeasible JJ 10_1101-2020_01_28_923532 340 31 in in IN 10_1101-2020_01_28_923532 340 32 many many JJ 10_1101-2020_01_28_923532 340 33 instances instance NNS 10_1101-2020_01_28_923532 340 34 . . . 10_1101-2020_01_28_923532 341 1 Even even RB 10_1101-2020_01_28_923532 341 2 when when WRB 10_1101-2020_01_28_923532 341 3 the the DT 10_1101-2020_01_28_923532 341 4 instance instance NN 10_1101-2020_01_28_923532 341 5 remained remain VBD 10_1101-2020_01_28_923532 341 6 feasible feasible JJ 10_1101-2020_01_28_923532 341 7 , , , 10_1101-2020_01_28_923532 341 8 optimal optimal JJ 10_1101-2020_01_28_923532 341 9 cohort cohort NN 10_1101-2020_01_28_923532 341 10 treatment treatment NN 10_1101-2020_01_28_923532 341 11 set set NN 10_1101-2020_01_28_923532 341 12 sizes size NNS 10_1101-2020_01_28_923532 341 13 increased increase VBD 10_1101-2020_01_28_923532 341 14 rapidly rapidly RB 10_1101-2020_01_28_923532 341 15 as as IN 10_1101-2020_01_28_923532 341 16 the the DT 10_1101-2020_01_28_923532 341 17 expression expression NN 10_1101-2020_01_28_923532 341 18 levels level NNS 10_1101-2020_01_28_923532 341 19 allowed allow VBN 10_1101-2020_01_28_923532 341 20 decreased decreased JJ 10_1101-2020_01_28_923532 341 21 ( ( -LRB- 10_1101-2020_01_28_923532 341 22 Figure Figure NNP 10_1101-2020_01_28_923532 341 23 7 7 CD 10_1101-2020_01_28_923532 341 24 ) ) -RRB- 10_1101-2020_01_28_923532 341 25 , , , 10_1101-2020_01_28_923532 341 26 pointing point VBG 10_1101-2020_01_28_923532 341 27 to to IN 10_1101-2020_01_28_923532 341 28 potential potential JJ 10_1101-2020_01_28_923532 341 29 inherent inherent JJ 10_1101-2020_01_28_923532 341 30 limitations limitation NNS 10_1101-2020_01_28_923532 341 31 of of IN 10_1101-2020_01_28_923532 341 32 applying apply VBG 10_1101-2020_01_28_923532 341 33 such such JJ 10_1101-2020_01_28_923532 341 34 combination combination NN 10_1101-2020_01_28_923532 341 35 approaches approach NNS 10_1101-2020_01_28_923532 341 36 to to IN 10_1101-2020_01_28_923532 341 37 patients patient NNS 10_1101-2020_01_28_923532 341 38 in in IN 10_1101-2020_01_28_923532 341 39 the the DT 10_1101-2020_01_28_923532 341 40 clinic clinic NN 10_1101-2020_01_28_923532 341 41 and and CC 10_1101-2020_01_28_923532 341 42 the the DT 10_1101-2020_01_28_923532 341 43 need need NN 10_1101-2020_01_28_923532 341 44 to to TO 10_1101-2020_01_28_923532 341 45 carefully carefully RB 10_1101-2020_01_28_923532 341 46 monitor monitor VB 10_1101-2020_01_28_923532 341 47 their -PRON- PRP$ 10_1101-2020_01_28_923532 341 48 putative putative JJ 10_1101-2020_01_28_923532 341 49 safety safety NN 10_1101-2020_01_28_923532 341 50 and and CC 10_1101-2020_01_28_923532 341 51 toxicity toxicity NN 10_1101-2020_01_28_923532 341 52 in in IN 10_1101-2020_01_28_923532 341 53 future future JJ 10_1101-2020_01_28_923532 341 54 applications application NNS 10_1101-2020_01_28_923532 341 55 . . . 10_1101-2020_01_28_923532 342 1 Finally finally RB 10_1101-2020_01_28_923532 342 2 , , , 10_1101-2020_01_28_923532 342 3 functional functional JJ 10_1101-2020_01_28_923532 342 4 enrichment enrichment NN 10_1101-2020_01_28_923532 342 5 analysis analysis NN 10_1101-2020_01_28_923532 342 6 of of IN 10_1101-2020_01_28_923532 342 7 genes gene NNS 10_1101-2020_01_28_923532 342 8 commonly commonly RB 10_1101-2020_01_28_923532 342 9 occurring occur VBG 10_1101-2020_01_28_923532 342 10 in in IN 10_1101-2020_01_28_923532 342 11 the the DT 10_1101-2020_01_28_923532 342 12 optimal optimal JJ 10_1101-2020_01_28_923532 342 13 target target NN 10_1101-2020_01_28_923532 342 14 sets set NNS 10_1101-2020_01_28_923532 342 15 reinforced reinforce VBD 10_1101-2020_01_28_923532 342 16 the the DT 10_1101-2020_01_28_923532 342 17 central central JJ 10_1101-2020_01_28_923532 342 18 role role NN 10_1101-2020_01_28_923532 342 19 of of IN 10_1101-2020_01_28_923532 342 20 the the DT 10_1101-2020_01_28_923532 342 21 widely widely RB 10_1101-2020_01_28_923532 342 22 studied studied JJ 10_1101-2020_01_28_923532 342 23 oncogene oncogene NN 10_1101-2020_01_28_923532 342 24 EGFR EGFR NNP 10_1101-2020_01_28_923532 342 25 and and CC 10_1101-2020_01_28_923532 342 26 other other JJ 10_1101-2020_01_28_923532 342 27 transmembrane transmembrane JJ 10_1101-2020_01_28_923532 342 28 kinases kinase NNS 10_1101-2020_01_28_923532 342 29 . . . 10_1101-2020_01_28_923532 343 1 We -PRON- PRP 10_1101-2020_01_28_923532 343 2 also also RB 10_1101-2020_01_28_923532 343 3 found find VBD 10_1101-2020_01_28_923532 343 4 that that IN 10_1101-2020_01_28_923532 343 5 that that IN 10_1101-2020_01_28_923532 343 6 the the DT 10_1101-2020_01_28_923532 343 7 less less RBR 10_1101-2020_01_28_923532 343 8 - - HYPH 10_1101-2020_01_28_923532 343 9 studied study VBN 10_1101-2020_01_28_923532 343 10 phosphatase phosphatase NN 10_1101-2020_01_28_923532 343 11 PTPRZ1 ptprz1 NN 10_1101-2020_01_28_923532 343 12 is be VBZ 10_1101-2020_01_28_923532 343 13 a a DT 10_1101-2020_01_28_923532 343 14 useful useful JJ 10_1101-2020_01_28_923532 343 15 target target NN 10_1101-2020_01_28_923532 343 16 , , , 10_1101-2020_01_28_923532 343 17 especially especially RB 10_1101-2020_01_28_923532 343 18 in in IN 10_1101-2020_01_28_923532 343 19 brain brain NN 10_1101-2020_01_28_923532 343 20 cancer cancer NN 10_1101-2020_01_28_923532 343 21 . . . 10_1101-2020_01_28_923532 344 1 In in IN 10_1101-2020_01_28_923532 344 2 summary summary NN 10_1101-2020_01_28_923532 344 3 , , , 10_1101-2020_01_28_923532 344 4 this this DT 10_1101-2020_01_28_923532 344 5 study study NN 10_1101-2020_01_28_923532 344 6 is be VBZ 10_1101-2020_01_28_923532 344 7 the the DT 10_1101-2020_01_28_923532 344 8 first first JJ 10_1101-2020_01_28_923532 344 9 to to IN 10_1101-2020_01_28_923532 344 10 harness harness JJ 10_1101-2020_01_28_923532 344 11 combinatorial combinatorial JJ 10_1101-2020_01_28_923532 344 12 optimization optimization NN 10_1101-2020_01_28_923532 344 13 tools tool NNS 10_1101-2020_01_28_923532 344 14 to to TO 10_1101-2020_01_28_923532 344 15 analyze analyze VB 10_1101-2020_01_28_923532 344 16 emerging emerge VBG 10_1101-2020_01_28_923532 344 17 single single JJ 10_1101-2020_01_28_923532 344 18 - - HYPH 10_1101-2020_01_28_923532 344 19 cell cell NN 10_1101-2020_01_28_923532 344 20 data datum NNS 10_1101-2020_01_28_923532 344 21 to to TO 10_1101-2020_01_28_923532 344 22 portray portray VB 10_1101-2020_01_28_923532 344 23 the the DT 10_1101-2020_01_28_923532 344 24 landscape landscape NN 10_1101-2020_01_28_923532 344 25 of of IN 10_1101-2020_01_28_923532 344 26 feasible feasible JJ 10_1101-2020_01_28_923532 344 27 personalized personalize VBN 10_1101-2020_01_28_923532 344 28 combinations combination NNS 10_1101-2020_01_28_923532 344 29 in in IN 10_1101-2020_01_28_923532 344 30 cancer cancer NN 10_1101-2020_01_28_923532 344 31 medicine medicine NN 10_1101-2020_01_28_923532 344 32 . . . 10_1101-2020_01_28_923532 345 1 Our -PRON- PRP$ 10_1101-2020_01_28_923532 345 2 findings finding NNS 10_1101-2020_01_28_923532 345 3 uncover uncover VBP 10_1101-2020_01_28_923532 345 4 promising promise VBG 10_1101-2020_01_28_923532 345 5 membranal membranal JJ 10_1101-2020_01_28_923532 345 6 targets target NNS 10_1101-2020_01_28_923532 345 7 for for IN 10_1101-2020_01_28_923532 345 8 the the DT 10_1101-2020_01_28_923532 345 9 development development NN 10_1101-2020_01_28_923532 345 10 of of IN 10_1101-2020_01_28_923532 345 11 future future JJ 10_1101-2020_01_28_923532 345 12 oncology oncology NN 10_1101-2020_01_28_923532 345 13 medicines medicine NNS 10_1101-2020_01_28_923532 345 14 that that WDT 10_1101-2020_01_28_923532 345 15 may may MD 10_1101-2020_01_28_923532 345 16 serve serve VB 10_1101-2020_01_28_923532 345 17 to to TO 10_1101-2020_01_28_923532 345 18 optimize optimize VB 10_1101-2020_01_28_923532 345 19 the the DT 10_1101-2020_01_28_923532 345 20 treatment treatment NN 10_1101-2020_01_28_923532 345 21 of of IN 10_1101-2020_01_28_923532 345 22 cancer cancer NN 10_1101-2020_01_28_923532 345 23 patient patient NN 10_1101-2020_01_28_923532 345 24 cohorts cohort NNS 10_1101-2020_01_28_923532 345 25 in in IN 10_1101-2020_01_28_923532 345 26 several several JJ 10_1101-2020_01_28_923532 345 27 cancer cancer NN 10_1101-2020_01_28_923532 345 28 types type NNS 10_1101-2020_01_28_923532 345 29 . . . 10_1101-2020_01_28_923532 346 1 The the DT 10_1101-2020_01_28_923532 346 2 MadHitter MadHitter NNP 10_1101-2020_01_28_923532 346 3 approach approach NN 10_1101-2020_01_28_923532 346 4 presented present VBD 10_1101-2020_01_28_923532 346 5 and and CC 10_1101-2020_01_28_923532 346 6 the the DT 10_1101-2020_01_28_923532 346 7 accompanying accompany VBG 10_1101-2020_01_28_923532 346 8 software software NN 10_1101-2020_01_28_923532 346 9 made make VBD 10_1101-2020_01_28_923532 346 10 public public JJ 10_1101-2020_01_28_923532 346 11 can can MD 10_1101-2020_01_28_923532 346 12 be be VB 10_1101-2020_01_28_923532 346 13 readily readily RB 10_1101-2020_01_28_923532 346 14 applied apply VBN 10_1101-2020_01_28_923532 346 15 to to TO 10_1101-2020_01_28_923532 346 16 address address VB 10_1101-2020_01_28_923532 346 17 additional additional JJ 10_1101-2020_01_28_923532 346 18 fundamental fundamental JJ 10_1101-2020_01_28_923532 346 19 related related JJ 10_1101-2020_01_28_923532 346 20 research research NN 10_1101-2020_01_28_923532 346 21 questions question NNS 10_1101-2020_01_28_923532 346 22 and and CC 10_1101-2020_01_28_923532 346 23 analyze analyze VB 10_1101-2020_01_28_923532 346 24 additional additional JJ 10_1101-2020_01_28_923532 346 25 cancer cancer NN 10_1101-2020_01_28_923532 346 26 data datum NNS 10_1101-2020_01_28_923532 346 27 sets set NNS 10_1101-2020_01_28_923532 346 28 as as IN 10_1101-2020_01_28_923532 346 29 they -PRON- PRP 10_1101-2020_01_28_923532 346 30 become become VBP 10_1101-2020_01_28_923532 346 31 available available JJ 10_1101-2020_01_28_923532 346 32 . . . 10_1101-2020_01_28_923532 347 1 Methods Methods NNP 10_1101-2020_01_28_923532 347 2 Data data NN 10_1101-2020_01_28_923532 347 3 Sets set NNS 10_1101-2020_01_28_923532 347 4 We -PRON- PRP 10_1101-2020_01_28_923532 347 5 retrieved retrieve VBD 10_1101-2020_01_28_923532 347 6 and and CC 10_1101-2020_01_28_923532 347 7 organized organize VBN 10_1101-2020_01_28_923532 347 8 data data NN 10_1101-2020_01_28_923532 347 9 sets set NNS 10_1101-2020_01_28_923532 347 10 from from IN 10_1101-2020_01_28_923532 347 11 NCBI NCBI NNP 10_1101-2020_01_28_923532 347 12 ’s ’s POS 10_1101-2020_01_28_923532 347 13 Gene Gene NNP 10_1101-2020_01_28_923532 347 14 Expression Expression NNP 10_1101-2020_01_28_923532 347 15 Omnibus Omnibus NNP 10_1101-2020_01_28_923532 347 16 ( ( -LRB- 10_1101-2020_01_28_923532 347 17 GEO)58 geo)58 DT 10_1101-2020_01_28_923532 347 18 and and CC 10_1101-2020_01_28_923532 347 19 Ensembl Ensembl NNP 10_1101-2020_01_28_923532 347 20 ’s ’s , 10_1101-2020_01_28_923532 347 21 ArrayExpess59 ArrayExpess59 NNP 10_1101-2020_01_28_923532 347 22 and and CC 10_1101-2020_01_28_923532 347 23 the the DT 10_1101-2020_01_28_923532 347 24 Broad Broad NNP 10_1101-2020_01_28_923532 347 25 Institute Institute NNP 10_1101-2020_01_28_923532 347 26 ’s ’s POS 10_1101-2020_01_28_923532 347 27 Single Single NNP 10_1101-2020_01_28_923532 347 28 Cell Cell NNP 10_1101-2020_01_28_923532 347 29 Portal Portal NNP 10_1101-2020_01_28_923532 347 30 ( ( -LRB- 10_1101-2020_01_28_923532 347 31 https://portals.broadinstitute.org/single_cell https://portals.broadinstitute.org/single_cell UH 10_1101-2020_01_28_923532 347 32 ) ) -RRB- 10_1101-2020_01_28_923532 347 33 . . . 10_1101-2020_01_28_923532 348 1 Nine nine CD 10_1101-2020_01_28_923532 348 2 data data NN 10_1101-2020_01_28_923532 348 3 sets set NNS 10_1101-2020_01_28_923532 348 4 had have VBD 10_1101-2020_01_28_923532 348 5 sufficient sufficient JJ 10_1101-2020_01_28_923532 348 6 tumor tumor NN 10_1101-2020_01_28_923532 348 7 and and CC 10_1101-2020_01_28_923532 348 8 non non JJ 10_1101-2020_01_28_923532 348 9 - - JJ 10_1101-2020_01_28_923532 348 10 tumor tumor JJ 10_1101-2020_01_28_923532 348 11 cells cell NNS 10_1101-2020_01_28_923532 348 12 and and CC 10_1101-2020_01_28_923532 348 13 were be VBD 10_1101-2020_01_28_923532 348 14 used use VBN 10_1101-2020_01_28_923532 348 15 in in IN 10_1101-2020_01_28_923532 348 16 this this DT 10_1101-2020_01_28_923532 348 17 study study NN 10_1101-2020_01_28_923532 348 18 ; ; : 10_1101-2020_01_28_923532 348 19 an an DT 10_1101-2020_01_28_923532 348 20 additional additional JJ 10_1101-2020_01_28_923532 348 21 five five CD 10_1101-2020_01_28_923532 348 22 data datum NNS 10_1101-2020_01_28_923532 348 23 sets set NNS 10_1101-2020_01_28_923532 348 24 had have VBD 10_1101-2020_01_28_923532 348 25 sufficient sufficient JJ 10_1101-2020_01_28_923532 348 26 tumor tumor NN 10_1101-2020_01_28_923532 348 27 cells cell NNS 10_1101-2020_01_28_923532 348 28 only only RB 10_1101-2020_01_28_923532 348 29 and and CC 10_1101-2020_01_28_923532 348 30 were be VBD 10_1101-2020_01_28_923532 348 31 used use VBN 10_1101-2020_01_28_923532 348 32 in in IN 10_1101-2020_01_28_923532 348 33 testing test VBG 10_1101-2020_01_28_923532 348 34 early early JJ 10_1101-2020_01_28_923532 348 35 versions version NNS 10_1101-2020_01_28_923532 348 36 of of IN 10_1101-2020_01_28_923532 348 37 MadHitter MadHitter NNP 10_1101-2020_01_28_923532 348 38 . . . 10_1101-2020_01_28_923532 349 1 Suitable suitable JJ 10_1101-2020_01_28_923532 349 2 data data NN 10_1101-2020_01_28_923532 349 3 sets set NNS 10_1101-2020_01_28_923532 349 4 were be VBD 10_1101-2020_01_28_923532 349 5 identified identify VBN 10_1101-2020_01_28_923532 349 6 by by IN 10_1101-2020_01_28_923532 349 7 searching search VBG 10_1101-2020_01_28_923532 349 8 scRNASeqDB60 scRNASeqDB60 NNP 10_1101-2020_01_28_923532 349 9 , , , 10_1101-2020_01_28_923532 349 10 CancerSea61 CancerSea61 NNP 10_1101-2020_01_28_923532 349 11 , , , 10_1101-2020_01_28_923532 349 12 GEO GEO NNP 10_1101-2020_01_28_923532 349 13 , , , 10_1101-2020_01_28_923532 349 14 ArrayExpress ArrayExpress NNP 10_1101-2020_01_28_923532 349 15 , , , 10_1101-2020_01_28_923532 349 16 Google Google NNP 10_1101-2020_01_28_923532 349 17 Scholar Scholar NNP 10_1101-2020_01_28_923532 349 18 , , , 10_1101-2020_01_28_923532 349 19 and and CC 10_1101-2020_01_28_923532 349 20 the the DT 10_1101-2020_01_28_923532 349 21 10x 10x NNPS 10_1101-2020_01_28_923532 349 22 Genomics Genomics NNP 10_1101-2020_01_28_923532 349 23 list list NN 10_1101-2020_01_28_923532 349 24 of of IN 10_1101-2020_01_28_923532 349 25 publications publication NNS 10_1101-2020_01_28_923532 349 26 ( ( -LRB- 10_1101-2020_01_28_923532 349 27 https://www.10xgenomics.com/resources/publications/ https://www.10xgenomics.com/resources/publications/ NNP 10_1101-2020_01_28_923532 349 28 ) ) -RRB- 10_1101-2020_01_28_923532 349 29 . . . 10_1101-2020_01_28_923532 350 1 We -PRON- PRP 10_1101-2020_01_28_923532 350 2 required require VBD 10_1101-2020_01_28_923532 350 3 that that IN 10_1101-2020_01_28_923532 350 4 each each DT 10_1101-2020_01_28_923532 350 5 105 105 CD 10_1101-2020_01_28_923532 350 6 and and CC 10_1101-2020_01_28_923532 350 7 is be VBZ 10_1101-2020_01_28_923532 350 8 also also RB 10_1101-2020_01_28_923532 350 9 made make VBN 10_1101-2020_01_28_923532 350 10 available available JJ 10_1101-2020_01_28_923532 350 11 for for IN 10_1101-2020_01_28_923532 350 12 use use NN 10_1101-2020_01_28_923532 350 13 under under IN 10_1101-2020_01_28_923532 350 14 a a DT 10_1101-2020_01_28_923532 350 15 CC0 CC0 NNP 10_1101-2020_01_28_923532 350 16 license license NN 10_1101-2020_01_28_923532 350 17 . . . 10_1101-2020_01_28_923532 351 1 ( ( -LRB- 10_1101-2020_01_28_923532 351 2 which which WDT 10_1101-2020_01_28_923532 351 3 was be VBD 10_1101-2020_01_28_923532 351 4 not not RB 10_1101-2020_01_28_923532 351 5 certified certify VBN 10_1101-2020_01_28_923532 351 6 by by IN 10_1101-2020_01_28_923532 351 7 peer peer NN 10_1101-2020_01_28_923532 351 8 review review NN 10_1101-2020_01_28_923532 351 9 ) ) -RRB- 10_1101-2020_01_28_923532 351 10 is be VBZ 10_1101-2020_01_28_923532 351 11 the the DT 10_1101-2020_01_28_923532 351 12 author author NN 10_1101-2020_01_28_923532 351 13 / / SYM 10_1101-2020_01_28_923532 351 14 funder funder NN 10_1101-2020_01_28_923532 351 15 . . . 10_1101-2020_01_28_923532 352 1 This this DT 10_1101-2020_01_28_923532 352 2 article article NN 10_1101-2020_01_28_923532 352 3 is be VBZ 10_1101-2020_01_28_923532 352 4 a a DT 10_1101-2020_01_28_923532 352 5 US US NNP 10_1101-2020_01_28_923532 352 6 Government Government NNP 10_1101-2020_01_28_923532 352 7 work work NN 10_1101-2020_01_28_923532 352 8 . . . 10_1101-2020_01_28_923532 353 1 It -PRON- PRP 10_1101-2020_01_28_923532 353 2 is be VBZ 10_1101-2020_01_28_923532 353 3 not not RB 10_1101-2020_01_28_923532 353 4 subject subject JJ 10_1101-2020_01_28_923532 353 5 to to IN 10_1101-2020_01_28_923532 353 6 copyright copyright NN 10_1101-2020_01_28_923532 353 7 under under IN 10_1101-2020_01_28_923532 353 8 17 17 CD 10_1101-2020_01_28_923532 353 9 USC usc NN 10_1101-2020_01_28_923532 353 10 The the DT 10_1101-2020_01_28_923532 353 11 copyright copyright NN 10_1101-2020_01_28_923532 353 12 holder holder NN 10_1101-2020_01_28_923532 353 13 for for IN 10_1101-2020_01_28_923532 353 14 this this DT 10_1101-2020_01_28_923532 353 15 preprintthis preprintthis NN 10_1101-2020_01_28_923532 353 16 version version NN 10_1101-2020_01_28_923532 353 17 posted post VBD 10_1101-2020_01_28_923532 353 18 February February NNP 10_1101-2020_01_28_923532 353 19 12 12 CD 10_1101-2020_01_28_923532 353 20 , , , 10_1101-2020_01_28_923532 353 21 2021 2021 CD 10_1101-2020_01_28_923532 353 22 . . . 10_1101-2020_01_28_923532 353 23 ; ; : 10_1101-2020_01_28_923532 353 24 https://doi.org/10.1101/2020.01.28.923532doi https://doi.org/10.1101/2020.01.28.923532doi ADD 10_1101-2020_01_28_923532 353 25 : : : 10_1101-2020_01_28_923532 353 26 bioRxiv biorxiv VB 10_1101-2020_01_28_923532 353 27 preprint preprint NN 10_1101-2020_01_28_923532 353 28 https://portals.broadinstitute.org/single_cell https://portals.broadinstitute.org/single_cell ADD 10_1101-2020_01_28_923532 353 29 https://www.10xgenomics.com/resources/publications/ https://www.10xgenomics.com/resources/publications/ PRP 10_1101-2020_01_28_923532 353 30 https://doi.org/10.1101/2020.01.28.923532 https://doi.org/10.1101/2020.01.28.923532 UH 10_1101-2020_01_28_923532 353 31 28 28 CD 10_1101-2020_01_28_923532 353 32 data datum NNS 10_1101-2020_01_28_923532 353 33 set set NN 10_1101-2020_01_28_923532 353 34 contain contain NN 10_1101-2020_01_28_923532 353 35 measurements measurement NNS 10_1101-2020_01_28_923532 353 36 of of IN 10_1101-2020_01_28_923532 353 37 RNA RNA NNP 10_1101-2020_01_28_923532 353 38 expression expression NN 10_1101-2020_01_28_923532 353 39 on on IN 10_1101-2020_01_28_923532 353 40 single single JJ 10_1101-2020_01_28_923532 353 41 cells cell NNS 10_1101-2020_01_28_923532 353 42 from from IN 10_1101-2020_01_28_923532 353 43 human human JJ 10_1101-2020_01_28_923532 353 44 primary primary JJ 10_1101-2020_01_28_923532 353 45 solid solid JJ 10_1101-2020_01_28_923532 353 46 tumors tumor NNS 10_1101-2020_01_28_923532 353 47 of of IN 10_1101-2020_01_28_923532 353 48 at at RB 10_1101-2020_01_28_923532 353 49 least least RBS 10_1101-2020_01_28_923532 353 50 two two CD 10_1101-2020_01_28_923532 353 51 patients patient NNS 10_1101-2020_01_28_923532 353 52 and and CC 10_1101-2020_01_28_923532 353 53 the the DT 10_1101-2020_01_28_923532 353 54 metadata metadata NN 10_1101-2020_01_28_923532 353 55 are be VBP 10_1101-2020_01_28_923532 353 56 consistent consistent JJ 10_1101-2020_01_28_923532 353 57 with with IN 10_1101-2020_01_28_923532 353 58 the the DT 10_1101-2020_01_28_923532 353 59 primary primary JJ 10_1101-2020_01_28_923532 353 60 data datum NNS 10_1101-2020_01_28_923532 353 61 . . . 10_1101-2020_01_28_923532 354 1 We -PRON- PRP 10_1101-2020_01_28_923532 354 2 are be VBP 10_1101-2020_01_28_923532 354 3 grateful grateful JJ 10_1101-2020_01_28_923532 354 4 to to IN 10_1101-2020_01_28_923532 354 5 several several JJ 10_1101-2020_01_28_923532 354 6 of of IN 10_1101-2020_01_28_923532 354 7 the the DT 10_1101-2020_01_28_923532 354 8 data datum NNS 10_1101-2020_01_28_923532 354 9 depositing deposit VBG 10_1101-2020_01_28_923532 354 10 authors author NNS 10_1101-2020_01_28_923532 354 11 of of IN 10_1101-2020_01_28_923532 354 12 data datum NNS 10_1101-2020_01_28_923532 354 13 sets set NNS 10_1101-2020_01_28_923532 354 14 for for IN 10_1101-2020_01_28_923532 354 15 resolving resolve VBG 10_1101-2020_01_28_923532 354 16 metadata metadata NN 10_1101-2020_01_28_923532 354 17 inconsistencies inconsistency NNS 10_1101-2020_01_28_923532 354 18 by by IN 10_1101-2020_01_28_923532 354 19 e e NN 10_1101-2020_01_28_923532 354 20 - - NN 10_1101-2020_01_28_923532 354 21 mail mail NN 10_1101-2020_01_28_923532 354 22 correspondence correspondence NN 10_1101-2020_01_28_923532 354 23 and and CC 10_1101-2020_01_28_923532 354 24 by by IN 10_1101-2020_01_28_923532 354 25 sending send VBG 10_1101-2020_01_28_923532 354 26 additional additional JJ 10_1101-2020_01_28_923532 354 27 files file NNS 10_1101-2020_01_28_923532 354 28 not not RB 10_1101-2020_01_28_923532 354 29 available available JJ 10_1101-2020_01_28_923532 354 30 at at IN 10_1101-2020_01_28_923532 354 31 GEO GEO NNP 10_1101-2020_01_28_923532 354 32 or or CC 10_1101-2020_01_28_923532 354 33 ArrayExpress ArrayExpress NNP 10_1101-2020_01_28_923532 354 34 . . . 10_1101-2020_01_28_923532 355 1 We -PRON- PRP 10_1101-2020_01_28_923532 355 2 excluded exclude VBD 10_1101-2020_01_28_923532 355 3 blood blood NN 10_1101-2020_01_28_923532 355 4 cancers cancer NNS 10_1101-2020_01_28_923532 355 5 and and CC 10_1101-2020_01_28_923532 355 6 data data NN 10_1101-2020_01_28_923532 355 7 sets set NNS 10_1101-2020_01_28_923532 355 8 with with IN 10_1101-2020_01_28_923532 355 9 single single JJ 10_1101-2020_01_28_923532 355 10 patients patient NNS 10_1101-2020_01_28_923532 355 11 . . . 10_1101-2020_01_28_923532 356 1 When when WRB 10_1101-2020_01_28_923532 356 2 it -PRON- PRP 10_1101-2020_01_28_923532 356 3 was be VBD 10_1101-2020_01_28_923532 356 4 easily easily RB 10_1101-2020_01_28_923532 356 5 possible possible JJ 10_1101-2020_01_28_923532 356 6 to to TO 10_1101-2020_01_28_923532 356 7 separate separate VB 10_1101-2020_01_28_923532 356 8 cancer cancer NN 10_1101-2020_01_28_923532 356 9 cells cell NNS 10_1101-2020_01_28_923532 356 10 from from IN 10_1101-2020_01_28_923532 356 11 non non JJ 10_1101-2020_01_28_923532 356 12 - - JJ 10_1101-2020_01_28_923532 356 13 cancer cancer JJ 10_1101-2020_01_28_923532 356 14 cells cell NNS 10_1101-2020_01_28_923532 356 15 of of IN 10_1101-2020_01_28_923532 356 16 a a DT 10_1101-2020_01_28_923532 356 17 similar similar JJ 10_1101-2020_01_28_923532 356 18 type type NN 10_1101-2020_01_28_923532 356 19 , , , 10_1101-2020_01_28_923532 356 20 we -PRON- PRP 10_1101-2020_01_28_923532 356 21 did do VBD 10_1101-2020_01_28_923532 356 22 so so RB 10_1101-2020_01_28_923532 356 23 . . . 10_1101-2020_01_28_923532 357 1 The the DT 10_1101-2020_01_28_923532 357 2 main main JJ 10_1101-2020_01_28_923532 357 3 task task NN 10_1101-2020_01_28_923532 357 4 in in IN 10_1101-2020_01_28_923532 357 5 organizing organize VBG 10_1101-2020_01_28_923532 357 6 each each DT 10_1101-2020_01_28_923532 357 7 data data NN 10_1101-2020_01_28_923532 357 8 set set NN 10_1101-2020_01_28_923532 357 9 was be VBD 10_1101-2020_01_28_923532 357 10 to to TO 10_1101-2020_01_28_923532 357 11 separate separate VB 10_1101-2020_01_28_923532 357 12 the the DT 10_1101-2020_01_28_923532 357 13 cells cell NNS 10_1101-2020_01_28_923532 357 14 from from IN 10_1101-2020_01_28_923532 357 15 each each DT 10_1101-2020_01_28_923532 357 16 sample sample NN 10_1101-2020_01_28_923532 357 17 or or CC 10_1101-2020_01_28_923532 357 18 each each DT 10_1101-2020_01_28_923532 357 19 patient patient NN 10_1101-2020_01_28_923532 357 20 into into IN 10_1101-2020_01_28_923532 357 21 one one CD 10_1101-2020_01_28_923532 357 22 or or CC 10_1101-2020_01_28_923532 357 23 more more JJR 10_1101-2020_01_28_923532 357 24 single single JJ 10_1101-2020_01_28_923532 357 25 files file NNS 10_1101-2020_01_28_923532 357 26 . . . 10_1101-2020_01_28_923532 358 1 Representations representation NNS 10_1101-2020_01_28_923532 358 2 of of IN 10_1101-2020_01_28_923532 358 3 the the DT 10_1101-2020_01_28_923532 358 4 expression expression NN 10_1101-2020_01_28_923532 358 5 as as IN 10_1101-2020_01_28_923532 358 6 binary binary JJ 10_1101-2020_01_28_923532 358 7 , , , 10_1101-2020_01_28_923532 358 8 as as IN 10_1101-2020_01_28_923532 358 9 read read VBN 10_1101-2020_01_28_923532 358 10 counts count NNS 10_1101-2020_01_28_923532 358 11 , , , 10_1101-2020_01_28_923532 358 12 or or CC 10_1101-2020_01_28_923532 358 13 as as IN 10_1101-2020_01_28_923532 358 14 normalized normalized JJ 10_1101-2020_01_28_923532 358 15 quantities quantity NNS 10_1101-2020_01_28_923532 358 16 such such JJ 10_1101-2020_01_28_923532 358 17 as as IN 10_1101-2020_01_28_923532 358 18 transcripts transcript NNS 10_1101-2020_01_28_923532 358 19 per per IN 10_1101-2020_01_28_923532 358 20 million million CD 10_1101-2020_01_28_923532 358 21 ( ( -LRB- 10_1101-2020_01_28_923532 358 22 TPM TPM NNP 10_1101-2020_01_28_923532 358 23 ) ) -RRB- 10_1101-2020_01_28_923532 358 24 were be VBD 10_1101-2020_01_28_923532 358 25 retained retain VBN 10_1101-2020_01_28_923532 358 26 from from IN 10_1101-2020_01_28_923532 358 27 the the DT 10_1101-2020_01_28_923532 358 28 original original JJ 10_1101-2020_01_28_923532 358 29 data datum NNS 10_1101-2020_01_28_923532 358 30 . . . 10_1101-2020_01_28_923532 359 1 When when WRB 10_1101-2020_01_28_923532 359 2 the the DT 10_1101-2020_01_28_923532 359 3 data data NN 10_1101-2020_01_28_923532 359 4 set set NN 10_1101-2020_01_28_923532 359 5 included include VBD 10_1101-2020_01_28_923532 359 6 cell cell NN 10_1101-2020_01_28_923532 359 7 type type NN 10_1101-2020_01_28_923532 359 8 assignments assignment NNS 10_1101-2020_01_28_923532 359 9 , , , 10_1101-2020_01_28_923532 359 10 we -PRON- PRP 10_1101-2020_01_28_923532 359 11 retained retain VBD 10_1101-2020_01_28_923532 359 12 those those DT 10_1101-2020_01_28_923532 359 13 to to TO 10_1101-2020_01_28_923532 359 14 classify classify VB 10_1101-2020_01_28_923532 359 15 cells cell NNS 10_1101-2020_01_28_923532 359 16 as as IN 10_1101-2020_01_28_923532 359 17 “ " `` 10_1101-2020_01_28_923532 359 18 cancer cancer NN 10_1101-2020_01_28_923532 359 19 ” " '' 10_1101-2020_01_28_923532 359 20 or or CC 10_1101-2020_01_28_923532 359 21 “ " `` 10_1101-2020_01_28_923532 359 22 non non JJ 10_1101-2020_01_28_923532 359 23 - - JJ 10_1101-2020_01_28_923532 359 24 cancer cancer JJ 10_1101-2020_01_28_923532 359 25 ” " '' 10_1101-2020_01_28_923532 359 26 , , , 10_1101-2020_01_28_923532 359 27 except except IN 10_1101-2020_01_28_923532 359 28 in in IN 10_1101-2020_01_28_923532 359 29 the the DT 10_1101-2020_01_28_923532 359 30 data data NN 10_1101-2020_01_28_923532 359 31 set set NN 10_1101-2020_01_28_923532 359 32 of of IN 10_1101-2020_01_28_923532 359 33 Karaayvaz Karaayvaz NNP 10_1101-2020_01_28_923532 359 34 et et NNP 10_1101-2020_01_28_923532 359 35 al.62 al.62 NNP 10_1101-2020_01_28_923532 359 36 where where WRB 10_1101-2020_01_28_923532 359 37 it -PRON- PRP 10_1101-2020_01_28_923532 359 38 was be VBD 10_1101-2020_01_28_923532 359 39 necessary necessary JJ 10_1101-2020_01_28_923532 359 40 to to TO 10_1101-2020_01_28_923532 359 41 reapply reapply VB 10_1101-2020_01_28_923532 359 42 filters filter NNS 10_1101-2020_01_28_923532 359 43 described describe VBN 10_1101-2020_01_28_923532 359 44 in in IN 10_1101-2020_01_28_923532 359 45 the the DT 10_1101-2020_01_28_923532 359 46 paper paper NN 10_1101-2020_01_28_923532 359 47 to to TO 10_1101-2020_01_28_923532 359 48 exclude exclude VB 10_1101-2020_01_28_923532 359 49 cells cell NNS 10_1101-2020_01_28_923532 359 50 expressing express VBG 10_1101-2020_01_28_923532 359 51 few few JJ 10_1101-2020_01_28_923532 359 52 genes gene NNS 10_1101-2020_01_28_923532 359 53 and and CC 10_1101-2020_01_28_923532 359 54 to to TO 10_1101-2020_01_28_923532 359 55 identify identify VB 10_1101-2020_01_28_923532 359 56 likely likely JJ 10_1101-2020_01_28_923532 359 57 cancer cancer NN 10_1101-2020_01_28_923532 359 58 and and CC 10_1101-2020_01_28_923532 359 59 likely likely JJ 10_1101-2020_01_28_923532 359 60 non non JJ 10_1101-2020_01_28_923532 359 61 - - JJ 10_1101-2020_01_28_923532 359 62 cancer cancer JJ 10_1101-2020_01_28_923532 359 63 cells cell NNS 10_1101-2020_01_28_923532 359 64 . . . 10_1101-2020_01_28_923532 360 1 If if IN 10_1101-2020_01_28_923532 360 2 cell cell NN 10_1101-2020_01_28_923532 360 3 types type NNS 10_1101-2020_01_28_923532 360 4 were be VBD 10_1101-2020_01_28_923532 360 5 not not RB 10_1101-2020_01_28_923532 360 6 distinguished distinguish VBN 10_1101-2020_01_28_923532 360 7 , , , 10_1101-2020_01_28_923532 360 8 all all DT 10_1101-2020_01_28_923532 360 9 cells cell NNS 10_1101-2020_01_28_923532 360 10 were be VBD 10_1101-2020_01_28_923532 360 11 treated treat VBN 10_1101-2020_01_28_923532 360 12 as as IN 10_1101-2020_01_28_923532 360 13 cancer cancer NN 10_1101-2020_01_28_923532 360 14 cells cell NNS 10_1101-2020_01_28_923532 360 15 . . . 10_1101-2020_01_28_923532 361 1 To to TO 10_1101-2020_01_28_923532 361 2 achieve achieve VB 10_1101-2020_01_28_923532 361 3 partial partial JJ 10_1101-2020_01_28_923532 361 4 consistency consistency NN 10_1101-2020_01_28_923532 361 5 in in IN 10_1101-2020_01_28_923532 361 6 the the DT 10_1101-2020_01_28_923532 361 7 genes gene NNS 10_1101-2020_01_28_923532 361 8 included include VBN 10_1101-2020_01_28_923532 361 9 , , , 10_1101-2020_01_28_923532 361 10 we -PRON- PRP 10_1101-2020_01_28_923532 361 11 filtered filter VBD 10_1101-2020_01_28_923532 361 12 data data NN 10_1101-2020_01_28_923532 361 13 sets set NNS 10_1101-2020_01_28_923532 361 14 to to TO 10_1101-2020_01_28_923532 361 15 include include VB 10_1101-2020_01_28_923532 361 16 only only RB 10_1101-2020_01_28_923532 361 17 those those DT 10_1101-2020_01_28_923532 361 18 gene gene NN 10_1101-2020_01_28_923532 361 19 labels label NNS 10_1101-2020_01_28_923532 361 20 recognized recognize VBD 10_1101-2020_01_28_923532 361 21 as as IN 10_1101-2020_01_28_923532 361 22 valid valid JJ 10_1101-2020_01_28_923532 361 23 by by IN 10_1101-2020_01_28_923532 361 24 the the DT 10_1101-2020_01_28_923532 361 25 HUGO HUGO NNP 10_1101-2020_01_28_923532 361 26 Gene Gene NNP 10_1101-2020_01_28_923532 361 27 Nomenclature Nomenclature NNP 10_1101-2020_01_28_923532 361 28 Committee Committee NNP 10_1101-2020_01_28_923532 361 29 ( ( -LRB- 10_1101-2020_01_28_923532 361 30 http://genenames.org http://genenames.org NNP 10_1101-2020_01_28_923532 361 31 ) ) -RRB- 10_1101-2020_01_28_923532 361 32 , , , 10_1101-2020_01_28_923532 361 33 but but CC 10_1101-2020_01_28_923532 361 34 otherwise otherwise RB 10_1101-2020_01_28_923532 361 35 we -PRON- PRP 10_1101-2020_01_28_923532 361 36 retained retain VBD 10_1101-2020_01_28_923532 361 37 whatever whatever WDT 10_1101-2020_01_28_923532 361 38 recognized recognize VBN 10_1101-2020_01_28_923532 361 39 genes gene NNS 10_1101-2020_01_28_923532 361 40 that that WDT 10_1101-2020_01_28_923532 361 41 the the DT 10_1101-2020_01_28_923532 361 42 data datum NNS 10_1101-2020_01_28_923532 361 43 submitters submitter NNS 10_1101-2020_01_28_923532 361 44 chose choose VBD 10_1101-2020_01_28_923532 361 45 to to TO 10_1101-2020_01_28_923532 361 46 include include VB 10_1101-2020_01_28_923532 361 47 . . . 10_1101-2020_01_28_923532 362 1 After after IN 10_1101-2020_01_28_923532 362 2 filtering filter VBG 10_1101-2020_01_28_923532 362 3 out out RP 10_1101-2020_01_28_923532 362 4 the the DT 10_1101-2020_01_28_923532 362 5 non non JJ 10_1101-2020_01_28_923532 362 6 - - JJ 10_1101-2020_01_28_923532 362 7 HUGO hugo JJ 10_1101-2020_01_28_923532 362 8 genes gene NNS 10_1101-2020_01_28_923532 362 9 , , , 10_1101-2020_01_28_923532 362 10 but but CC 10_1101-2020_01_28_923532 362 11 before before IN 10_1101-2020_01_28_923532 362 12 reducing reduce VBG 10_1101-2020_01_28_923532 362 13 the the DT 10_1101-2020_01_28_923532 362 14 set set NN 10_1101-2020_01_28_923532 362 15 of of IN 10_1101-2020_01_28_923532 362 16 genes gene NNS 10_1101-2020_01_28_923532 362 17 to to IN 10_1101-2020_01_28_923532 362 18 1269 1269 CD 10_1101-2020_01_28_923532 362 19 or or CC 10_1101-2020_01_28_923532 362 20 900 900 CD 10_1101-2020_01_28_923532 362 21 or or CC 10_1101-2020_01_28_923532 362 22 424 424 CD 10_1101-2020_01_28_923532 362 23 or or CC 10_1101-2020_01_28_923532 362 24 58 58 CD 10_1101-2020_01_28_923532 362 25 , , , 10_1101-2020_01_28_923532 362 26 we -PRON- PRP 10_1101-2020_01_28_923532 362 27 filtered filter VBD 10_1101-2020_01_28_923532 362 28 out out RP 10_1101-2020_01_28_923532 362 29 cells cell NNS 10_1101-2020_01_28_923532 362 30 as as IN 10_1101-2020_01_28_923532 362 31 follows follow VBZ 10_1101-2020_01_28_923532 362 32 . . . 10_1101-2020_01_28_923532 363 1 Some some DT 10_1101-2020_01_28_923532 363 2 data data NN 10_1101-2020_01_28_923532 363 3 sets set NNS 10_1101-2020_01_28_923532 363 4 came come VBD 10_1101-2020_01_28_923532 363 5 with with IN 10_1101-2020_01_28_923532 363 6 low low JJ 10_1101-2020_01_28_923532 363 7 expressing express VBG 10_1101-2020_01_28_923532 363 8 cells cell NNS 10_1101-2020_01_28_923532 363 9 filtered filter VBN 10_1101-2020_01_28_923532 363 10 out out RP 10_1101-2020_01_28_923532 363 11 . . . 10_1101-2020_01_28_923532 364 1 To to TO 10_1101-2020_01_28_923532 364 2 achieve achieve VB 10_1101-2020_01_28_923532 364 3 some some DT 10_1101-2020_01_28_923532 364 4 homogeneity homogeneity NN 10_1101-2020_01_28_923532 364 5 , , , 10_1101-2020_01_28_923532 364 6 we -PRON- PRP 10_1101-2020_01_28_923532 364 7 filtered filter VBD 10_1101-2020_01_28_923532 364 8 out out RP 10_1101-2020_01_28_923532 364 9 any any DT 10_1101-2020_01_28_923532 364 10 cells cell NNS 10_1101-2020_01_28_923532 364 11 expressing express VBG 10_1101-2020_01_28_923532 364 12 fewer few JJR 10_1101-2020_01_28_923532 364 13 than than IN 10_1101-2020_01_28_923532 364 14 10 10 CD 10_1101-2020_01_28_923532 364 15 % % NN 10_1101-2020_01_28_923532 364 16 of of IN 10_1101-2020_01_28_923532 364 17 all all DT 10_1101-2020_01_28_923532 364 18 genes gene NNS 10_1101-2020_01_28_923532 364 19 before before IN 10_1101-2020_01_28_923532 364 20 we -PRON- PRP 10_1101-2020_01_28_923532 364 21 reduced reduce VBD 10_1101-2020_01_28_923532 364 22 the the DT 10_1101-2020_01_28_923532 364 23 number number NN 10_1101-2020_01_28_923532 364 24 of of IN 10_1101-2020_01_28_923532 364 25 genes gene NNS 10_1101-2020_01_28_923532 364 26 . . . 10_1101-2020_01_28_923532 365 1 In in IN 10_1101-2020_01_28_923532 365 2 Supplementary Supplementary NNP 10_1101-2020_01_28_923532 365 3 Materials Materials NNP 10_1101-2020_01_28_923532 365 4 4 4 CD 10_1101-2020_01_28_923532 365 5 , , , 10_1101-2020_01_28_923532 365 6 we -PRON- PRP 10_1101-2020_01_28_923532 365 7 tested test VBD 10_1101-2020_01_28_923532 365 8 the the DT 10_1101-2020_01_28_923532 365 9 robustness robustness NN 10_1101-2020_01_28_923532 365 10 of of IN 10_1101-2020_01_28_923532 365 11 this this DT 10_1101-2020_01_28_923532 365 12 10 10 CD 10_1101-2020_01_28_923532 365 13 % % NN 10_1101-2020_01_28_923532 365 14 threshold threshold NN 10_1101-2020_01_28_923532 365 15 . . . 10_1101-2020_01_28_923532 366 1 Finally finally RB 10_1101-2020_01_28_923532 366 2 , , , 10_1101-2020_01_28_923532 366 3 we -PRON- PRP 10_1101-2020_01_28_923532 366 4 retained retain VBD 10_1101-2020_01_28_923532 366 5 either either CC 10_1101-2020_01_28_923532 366 6 all all DT 10_1101-2020_01_28_923532 366 7 available available JJ 10_1101-2020_01_28_923532 366 8 genes gene NNS 10_1101-2020_01_28_923532 366 9 from from IN 10_1101-2020_01_28_923532 366 10 among among IN 10_1101-2020_01_28_923532 366 11 either either CC 10_1101-2020_01_28_923532 366 12 our -PRON- PRP$ 10_1101-2020_01_28_923532 366 13 set set NN 10_1101-2020_01_28_923532 366 14 of of IN 10_1101-2020_01_28_923532 366 15 1269 1269 CD 10_1101-2020_01_28_923532 366 16 genes gene NNS 10_1101-2020_01_28_923532 366 17 encoding encode VBG 10_1101-2020_01_28_923532 366 18 cell cell NN 10_1101-2020_01_28_923532 366 19 - - HYPH 10_1101-2020_01_28_923532 366 20 surface surface NN 10_1101-2020_01_28_923532 366 21 receptors receptor NNS 10_1101-2020_01_28_923532 366 22 that that WDT 10_1101-2020_01_28_923532 366 23 met meet VBD 10_1101-2020_01_28_923532 366 24 additional additional JJ 10_1101-2020_01_28_923532 366 25 criteria criterion NNS 10_1101-2020_01_28_923532 366 26 on on IN 10_1101-2020_01_28_923532 366 27 low low JJ 10_1101-2020_01_28_923532 366 28 expression expression NN 10_1101-2020_01_28_923532 366 29 or or CC 10_1101-2020_01_28_923532 366 30 available available JJ 10_1101-2020_01_28_923532 366 31 ligand ligand NN 10_1101-2020_01_28_923532 366 32 - - HYPH 10_1101-2020_01_28_923532 366 33 mimicking mimicking NN 10_1101-2020_01_28_923532 366 34 peptides peptide NNS 10_1101-2020_01_28_923532 366 35 . . . 10_1101-2020_01_28_923532 367 1 Table table NN 10_1101-2020_01_28_923532 367 2 1 1 CD 10_1101-2020_01_28_923532 367 3 . . . 10_1101-2020_01_28_923532 368 1 Summary summary JJ 10_1101-2020_01_28_923532 368 2 descriptions description NNS 10_1101-2020_01_28_923532 368 3 of of IN 10_1101-2020_01_28_923532 368 4 single single JJ 10_1101-2020_01_28_923532 368 5 - - HYPH 10_1101-2020_01_28_923532 368 6 cell cell NN 10_1101-2020_01_28_923532 368 7 data data NN 10_1101-2020_01_28_923532 368 8 sets set NNS 10_1101-2020_01_28_923532 368 9 from from IN 10_1101-2020_01_28_923532 368 10 solid solid JJ 10_1101-2020_01_28_923532 368 11 tumors tumor NNS 10_1101-2020_01_28_923532 368 12 used use VBN 10_1101-2020_01_28_923532 368 13 either either CC 10_1101-2020_01_28_923532 368 14 for for IN 10_1101-2020_01_28_923532 368 15 analysis analysis NN 10_1101-2020_01_28_923532 368 16 ( ( -LRB- 10_1101-2020_01_28_923532 368 17 9 9 CD 10_1101-2020_01_28_923532 368 18 ) ) -RRB- 10_1101-2020_01_28_923532 368 19 or or CC 10_1101-2020_01_28_923532 368 20 preliminary preliminary JJ 10_1101-2020_01_28_923532 368 21 testing testing NN 10_1101-2020_01_28_923532 368 22 ( ( -LRB- 10_1101-2020_01_28_923532 368 23 5 5 CD 10_1101-2020_01_28_923532 368 24 additional additional JJ 10_1101-2020_01_28_923532 368 25 ) ) -RRB- 10_1101-2020_01_28_923532 368 26 . . . 10_1101-2020_01_28_923532 369 1 Data data NN 10_1101-2020_01_28_923532 369 2 sets set NNS 10_1101-2020_01_28_923532 369 3 are be VBP 10_1101-2020_01_28_923532 369 4 ordered order VBN 10_1101-2020_01_28_923532 369 5 so so IN 10_1101-2020_01_28_923532 369 6 that that IN 10_1101-2020_01_28_923532 369 7 those those DT 10_1101-2020_01_28_923532 369 8 from from IN 10_1101-2020_01_28_923532 369 9 the the DT 10_1101-2020_01_28_923532 369 10 same same JJ 10_1101-2020_01_28_923532 369 11 or or CC 10_1101-2020_01_28_923532 369 12 similar similar JJ 10_1101-2020_01_28_923532 369 13 tumor tumor NN 10_1101-2020_01_28_923532 369 14 types type NNS 10_1101-2020_01_28_923532 369 15 are be VBP 10_1101-2020_01_28_923532 369 16 on on IN 10_1101-2020_01_28_923532 369 17 consecutive consecutive JJ 10_1101-2020_01_28_923532 369 18 rows row NNS 10_1101-2020_01_28_923532 369 19 . . . 10_1101-2020_01_28_923532 370 1 The the DT 10_1101-2020_01_28_923532 370 2 first first JJ 10_1101-2020_01_28_923532 370 3 13 13 CD 10_1101-2020_01_28_923532 370 4 data datum NNS 10_1101-2020_01_28_923532 370 5 sets set NNS 10_1101-2020_01_28_923532 370 6 were be VBD 10_1101-2020_01_28_923532 370 7 obtained obtain VBN 10_1101-2020_01_28_923532 370 8 either either CC 10_1101-2020_01_28_923532 370 9 from from IN 10_1101-2020_01_28_923532 370 10 GEO GEO NNP 10_1101-2020_01_28_923532 370 11 or or CC 10_1101-2020_01_28_923532 370 12 the the DT 10_1101-2020_01_28_923532 370 13 Broad Broad NNP 10_1101-2020_01_28_923532 370 14 Institute Institute NNP 10_1101-2020_01_28_923532 370 15 Single Single NNP 10_1101-2020_01_28_923532 370 16 Cell Cell NNP 10_1101-2020_01_28_923532 370 17 Portal Portal NNP 10_1101-2020_01_28_923532 370 18 , , , 10_1101-2020_01_28_923532 370 19 but but CC 10_1101-2020_01_28_923532 370 20 the the DT 10_1101-2020_01_28_923532 370 21 GEO GEO NNP 10_1101-2020_01_28_923532 370 22 code code NN 10_1101-2020_01_28_923532 370 23 is be VBZ 10_1101-2020_01_28_923532 370 24 shown show VBN 10_1101-2020_01_28_923532 370 25 . . . 10_1101-2020_01_28_923532 371 1 The the DT 10_1101-2020_01_28_923532 371 2 data datum NNS 10_1101-2020_01_28_923532 371 3 set set VBN 10_1101-2020_01_28_923532 371 4 on on IN 10_1101-2020_01_28_923532 371 5 the the DT 10_1101-2020_01_28_923532 371 6 last last JJ 10_1101-2020_01_28_923532 371 7 row row NN 10_1101-2020_01_28_923532 371 8 was be VBD 10_1101-2020_01_28_923532 371 9 obtained obtain VBN 10_1101-2020_01_28_923532 371 10 from from IN 10_1101-2020_01_28_923532 371 11 ArrayExpress ArrayExpress NNP 10_1101-2020_01_28_923532 371 12 . . . 10_1101-2020_01_28_923532 372 1 In in IN 10_1101-2020_01_28_923532 372 2 some some DT 10_1101-2020_01_28_923532 372 3 data data NN 10_1101-2020_01_28_923532 372 4 sets set NNS 10_1101-2020_01_28_923532 372 5 that that WDT 10_1101-2020_01_28_923532 372 6 have have VBP 10_1101-2020_01_28_923532 372 7 both both DT 10_1101-2020_01_28_923532 372 8 cancer cancer NN 10_1101-2020_01_28_923532 372 9 and and CC 10_1101-2020_01_28_923532 372 10 non- non- NN 10_1101-2020_01_28_923532 372 11 cancer cancer NN 10_1101-2020_01_28_923532 372 12 cells cell NNS 10_1101-2020_01_28_923532 372 13 , , , 10_1101-2020_01_28_923532 372 14 there there EX 10_1101-2020_01_28_923532 372 15 may may MD 10_1101-2020_01_28_923532 372 16 be be VB 10_1101-2020_01_28_923532 372 17 samples sample NNS 10_1101-2020_01_28_923532 372 18 for for IN 10_1101-2020_01_28_923532 372 19 which which WDT 10_1101-2020_01_28_923532 372 20 only only RB 10_1101-2020_01_28_923532 372 21 one one CD 10_1101-2020_01_28_923532 372 22 type type NN 10_1101-2020_01_28_923532 372 23 or or CC 10_1101-2020_01_28_923532 372 24 the the DT 10_1101-2020_01_28_923532 372 25 other other JJ 10_1101-2020_01_28_923532 372 26 is be VBZ 10_1101-2020_01_28_923532 372 27 provided provide VBN 10_1101-2020_01_28_923532 372 28 . . . 10_1101-2020_01_28_923532 373 1 Hence hence RB 10_1101-2020_01_28_923532 373 2 , , , 10_1101-2020_01_28_923532 373 3 the the DT 10_1101-2020_01_28_923532 373 4 105 105 CD 10_1101-2020_01_28_923532 373 5 and and CC 10_1101-2020_01_28_923532 373 6 is be VBZ 10_1101-2020_01_28_923532 373 7 also also RB 10_1101-2020_01_28_923532 373 8 made make VBN 10_1101-2020_01_28_923532 373 9 available available JJ 10_1101-2020_01_28_923532 373 10 for for IN 10_1101-2020_01_28_923532 373 11 use use NN 10_1101-2020_01_28_923532 373 12 under under IN 10_1101-2020_01_28_923532 373 13 a a DT 10_1101-2020_01_28_923532 373 14 CC0 CC0 NNP 10_1101-2020_01_28_923532 373 15 license license NN 10_1101-2020_01_28_923532 373 16 . . . 10_1101-2020_01_28_923532 374 1 ( ( -LRB- 10_1101-2020_01_28_923532 374 2 which which WDT 10_1101-2020_01_28_923532 374 3 was be VBD 10_1101-2020_01_28_923532 374 4 not not RB 10_1101-2020_01_28_923532 374 5 certified certify VBN 10_1101-2020_01_28_923532 374 6 by by IN 10_1101-2020_01_28_923532 374 7 peer peer NN 10_1101-2020_01_28_923532 374 8 review review NN 10_1101-2020_01_28_923532 374 9 ) ) -RRB- 10_1101-2020_01_28_923532 374 10 is be VBZ 10_1101-2020_01_28_923532 374 11 the the DT 10_1101-2020_01_28_923532 374 12 author author NN 10_1101-2020_01_28_923532 374 13 / / SYM 10_1101-2020_01_28_923532 374 14 funder funder NN 10_1101-2020_01_28_923532 374 15 . . . 10_1101-2020_01_28_923532 375 1 This this DT 10_1101-2020_01_28_923532 375 2 article article NN 10_1101-2020_01_28_923532 375 3 is be VBZ 10_1101-2020_01_28_923532 375 4 a a DT 10_1101-2020_01_28_923532 375 5 US US NNP 10_1101-2020_01_28_923532 375 6 Government Government NNP 10_1101-2020_01_28_923532 375 7 work work NN 10_1101-2020_01_28_923532 375 8 . . . 10_1101-2020_01_28_923532 376 1 It -PRON- PRP 10_1101-2020_01_28_923532 376 2 is be VBZ 10_1101-2020_01_28_923532 376 3 not not RB 10_1101-2020_01_28_923532 376 4 subject subject JJ 10_1101-2020_01_28_923532 376 5 to to IN 10_1101-2020_01_28_923532 376 6 copyright copyright NN 10_1101-2020_01_28_923532 376 7 under under IN 10_1101-2020_01_28_923532 376 8 17 17 CD 10_1101-2020_01_28_923532 376 9 USC usc NN 10_1101-2020_01_28_923532 376 10 The the DT 10_1101-2020_01_28_923532 376 11 copyright copyright NN 10_1101-2020_01_28_923532 376 12 holder holder NN 10_1101-2020_01_28_923532 376 13 for for IN 10_1101-2020_01_28_923532 376 14 this this DT 10_1101-2020_01_28_923532 376 15 preprintthis preprintthis NN 10_1101-2020_01_28_923532 376 16 version version NN 10_1101-2020_01_28_923532 376 17 posted post VBD 10_1101-2020_01_28_923532 376 18 February February NNP 10_1101-2020_01_28_923532 376 19 12 12 CD 10_1101-2020_01_28_923532 376 20 , , , 10_1101-2020_01_28_923532 376 21 2021 2021 CD 10_1101-2020_01_28_923532 376 22 . . . 10_1101-2020_01_28_923532 376 23 ; ; : 10_1101-2020_01_28_923532 376 24 https://doi.org/10.1101/2020.01.28.923532doi https://doi.org/10.1101/2020.01.28.923532doi ADD 10_1101-2020_01_28_923532 376 25 : : : 10_1101-2020_01_28_923532 376 26 bioRxiv biorxiv NN 10_1101-2020_01_28_923532 376 27 preprint preprint NN 10_1101-2020_01_28_923532 376 28 http://genenames.org/ http://genenames.org/ NN 10_1101-2020_01_28_923532 376 29 https://doi.org/10.1101/2020.01.28.923532 https://doi.org/10.1101/2020.01.28.923532 UH 10_1101-2020_01_28_923532 376 30 29 29 CD 10_1101-2020_01_28_923532 376 31 numbers number NNS 10_1101-2020_01_28_923532 376 32 in in IN 10_1101-2020_01_28_923532 376 33 parentheses parenthesis NNS 10_1101-2020_01_28_923532 376 34 in in IN 10_1101-2020_01_28_923532 376 35 the the DT 10_1101-2020_01_28_923532 376 36 third third JJ 10_1101-2020_01_28_923532 376 37 and and CC 10_1101-2020_01_28_923532 376 38 fourth fourth JJ 10_1101-2020_01_28_923532 376 39 columns column NNS 10_1101-2020_01_28_923532 376 40 may may MD 10_1101-2020_01_28_923532 376 41 differ differ VB 10_1101-2020_01_28_923532 376 42 . . . 10_1101-2020_01_28_923532 377 1 Data datum NNS 10_1101-2020_01_28_923532 377 2 set set NN 10_1101-2020_01_28_923532 377 3 GSE11597863 gse11597863 NN 10_1101-2020_01_28_923532 377 4 supersedes supersede NNS 10_1101-2020_01_28_923532 377 5 and and CC 10_1101-2020_01_28_923532 377 6 partly partly RB 10_1101-2020_01_28_923532 377 7 subsumes subsume VBZ 10_1101-2020_01_28_923532 377 8 GSE725664 GSE725664 NNP 10_1101-2020_01_28_923532 377 9 . . . 10_1101-2020_01_28_923532 378 1 Data datum NNS 10_1101-2020_01_28_923532 378 2 set set VBD 10_1101-2020_01_28_923532 378 3 code code NN 10_1101-2020_01_28_923532 378 4 Cancer Cancer NNP 10_1101-2020_01_28_923532 378 5 type(s type(s NNP 10_1101-2020_01_28_923532 378 6 ) ) -RRB- 10_1101-2020_01_28_923532 378 7 Cancer cancer NN 10_1101-2020_01_28_923532 378 8 cells(samples cells(sample VBZ 10_1101-2020_01_28_923532 378 9 ) ) -RRB- 10_1101-2020_01_28_923532 378 10 Non- Non- NNP 10_1101-2020_01_28_923532 378 11 cancer cancer NN 10_1101-2020_01_28_923532 378 12 cells cell NNS 10_1101-2020_01_28_923532 378 13 ( ( -LRB- 10_1101-2020_01_28_923532 378 14 samples sample NNS 10_1101-2020_01_28_923532 378 15 ) ) -RRB- 10_1101-2020_01_28_923532 378 16 Clinical clinical JJ 10_1101-2020_01_28_923532 378 17 follow follow NN 10_1101-2020_01_28_923532 378 18 - - HYPH 10_1101-2020_01_28_923532 378 19 up up NN 10_1101-2020_01_28_923532 378 20 Reference(s reference(s CD 10_1101-2020_01_28_923532 378 21 ) ) -RRB- 10_1101-2020_01_28_923532 378 22 GSE75688 GSE75688 NNP 10_1101-2020_01_28_923532 378 23 Breast Breast NNP 10_1101-2020_01_28_923532 378 24 441(11 441(11 CD 10_1101-2020_01_28_923532 378 25 ) ) -RRB- 10_1101-2020_01_28_923532 378 26 -- -- : 10_1101-2020_01_28_923532 378 27 Metastasis metastasis NN 10_1101-2020_01_28_923532 378 28 or or CC 10_1101-2020_01_28_923532 378 29 not not RB 10_1101-2020_01_28_923532 378 30 65 65 CD 10_1101-2020_01_28_923532 378 31 GSE118389 GSE118389 NNP 10_1101-2020_01_28_923532 378 32 Breast Breast NNP 10_1101-2020_01_28_923532 378 33 804(6 804(6 CD 10_1101-2020_01_28_923532 378 34 ) ) -RRB- 10_1101-2020_01_28_923532 378 35 314(6 314(6 CD 10_1101-2020_01_28_923532 378 36 ) ) -RRB- 10_1101-2020_01_28_923532 378 37 Metastasis metastasis NN 10_1101-2020_01_28_923532 378 38 or or CC 10_1101-2020_01_28_923532 378 39 not not RB 10_1101-2020_01_28_923532 378 40 62 62 CD 10_1101-2020_01_28_923532 378 41 GSE89567 GSE89567 NNP 10_1101-2020_01_28_923532 378 42 Brain Brain NNP 10_1101-2020_01_28_923532 378 43 ( ( -LRB- 10_1101-2020_01_28_923532 378 44 glioma glioma NNP 10_1101-2020_01_28_923532 378 45 ) ) -RRB- 10_1101-2020_01_28_923532 378 46 5097(10 5097(10 CD 10_1101-2020_01_28_923532 378 47 ) ) -RRB- 10_1101-2020_01_28_923532 378 48 1146(9 1146(9 CD 10_1101-2020_01_28_923532 378 49 ) ) -RRB- 10_1101-2020_01_28_923532 378 50 No no DT 10_1101-2020_01_28_923532 378 51 66 66 CD 10_1101-2020_01_28_923532 378 52 GSE103224 GSE103224 NNP 10_1101-2020_01_28_923532 378 53 Brain Brain NNP 10_1101-2020_01_28_923532 378 54 ( ( -LRB- 10_1101-2020_01_28_923532 378 55 glioma glioma NNP 10_1101-2020_01_28_923532 378 56 ) ) -RRB- 10_1101-2020_01_28_923532 378 57 23793(8 23793(8 CD 10_1101-2020_01_28_923532 378 58 ) ) -RRB- 10_1101-2020_01_28_923532 378 59 -- -- : 10_1101-2020_01_28_923532 378 60 No no DT 10_1101-2020_01_28_923532 378 61 61 61 CD 10_1101-2020_01_28_923532 378 62 GSE70630 GSE70630 NNP 10_1101-2020_01_28_923532 378 63 Brain Brain NNP 10_1101-2020_01_28_923532 378 64 ( ( -LRB- 10_1101-2020_01_28_923532 378 65 glioma glioma NNP 10_1101-2020_01_28_923532 378 66 ) ) -RRB- 10_1101-2020_01_28_923532 378 67 4044(6 4044(6 CD 10_1101-2020_01_28_923532 378 68 ) ) -RRB- 10_1101-2020_01_28_923532 378 69 303(6 303(6 CD 10_1101-2020_01_28_923532 378 70 ) ) -RRB- 10_1101-2020_01_28_923532 378 71 No no DT 10_1101-2020_01_28_923532 378 72 67 67 CD 10_1101-2020_01_28_923532 378 73 GSE57872 GSE57872 NNP 10_1101-2020_01_28_923532 378 74 Brain Brain NNP 10_1101-2020_01_28_923532 378 75 ( ( -LRB- 10_1101-2020_01_28_923532 378 76 glioma glioma NNP 10_1101-2020_01_28_923532 378 77 ) ) -RRB- 10_1101-2020_01_28_923532 378 78 440(6 440(6 CD 10_1101-2020_01_28_923532 378 79 ) ) -RRB- 10_1101-2020_01_28_923532 378 80 -- -- : 10_1101-2020_01_28_923532 378 81 No no DT 10_1101-2020_01_28_923532 378 82 68 68 CD 10_1101-2020_01_28_923532 378 83 GSE102130 GSE102130 NNP 10_1101-2020_01_28_923532 378 84 Brain Brain NNP 10_1101-2020_01_28_923532 378 85 ( ( -LRB- 10_1101-2020_01_28_923532 378 86 6 6 CD 10_1101-2020_01_28_923532 378 87 glioma glioma NNS 10_1101-2020_01_28_923532 378 88 and and CC 10_1101-2020_01_28_923532 378 89 3 3 CD 10_1101-2020_01_28_923532 378 90 glioblastoma glioblastoma NN 10_1101-2020_01_28_923532 378 91 ) ) -RRB- 10_1101-2020_01_28_923532 378 92 2858(9 2858(9 CD 10_1101-2020_01_28_923532 378 93 ) ) -RRB- 10_1101-2020_01_28_923532 378 94 94(5 94(5 CD 10_1101-2020_01_28_923532 378 95 ) ) -RRB- 10_1101-2020_01_28_923532 378 96 No no DT 10_1101-2020_01_28_923532 378 97 69 69 CD 10_1101-2020_01_28_923532 378 98 GSE84465 GSE84465 NNP 10_1101-2020_01_28_923532 378 99 Brain Brain NNP 10_1101-2020_01_28_923532 378 100 ( ( -LRB- 10_1101-2020_01_28_923532 378 101 glioblastoma glioblastoma NNP 10_1101-2020_01_28_923532 378 102 ) ) -RRB- 10_1101-2020_01_28_923532 378 103 1091(4 1091(4 CD 10_1101-2020_01_28_923532 378 104 ) ) -RRB- 10_1101-2020_01_28_923532 378 105 651(4 651(4 CD 10_1101-2020_01_28_923532 378 106 ) ) -RRB- 10_1101-2020_01_28_923532 378 107 No no DT 10_1101-2020_01_28_923532 378 108 46 46 CD 10_1101-2020_01_28_923532 378 109 GSE81861 GSE81861 NNP 10_1101-2020_01_28_923532 378 110 Colorectal Colorectal NNP 10_1101-2020_01_28_923532 378 111 272(10 272(10 CD 10_1101-2020_01_28_923532 378 112 ) ) -RRB- 10_1101-2020_01_28_923532 378 113 160(6 160(6 CD 10_1101-2020_01_28_923532 378 114 ) ) -RRB- 10_1101-2020_01_28_923532 378 115 No no DT 10_1101-2020_01_28_923532 378 116 70 70 CD 10_1101-2020_01_28_923532 378 117 GSE103322 GSE103322 NNP 10_1101-2020_01_28_923532 378 118 Head Head NNP 10_1101-2020_01_28_923532 378 119 and and CC 10_1101-2020_01_28_923532 378 120 Neck Neck NNP 10_1101-2020_01_28_923532 378 121 2093(13 2093(13 CD 10_1101-2020_01_28_923532 378 122 ) ) -RRB- 10_1101-2020_01_28_923532 378 123 3197(15 3197(15 CD 10_1101-2020_01_28_923532 378 124 ) ) -RRB- 10_1101-2020_01_28_923532 378 125 No no DT 10_1101-2020_01_28_923532 378 126 71 71 CD 10_1101-2020_01_28_923532 378 127 GSE115978 GSE115978 NNP 10_1101-2020_01_28_923532 378 128 Melanoma Melanoma NNP 10_1101-2020_01_28_923532 378 129 2018(23 2018(23 CD 10_1101-2020_01_28_923532 378 130 ) ) -RRB- 10_1101-2020_01_28_923532 378 131 4334(32 4334(32 CD 10_1101-2020_01_28_923532 378 132 ) ) -RRB- 10_1101-2020_01_28_923532 378 133 Yes yes UH 10_1101-2020_01_28_923532 378 134 , , , 10_1101-2020_01_28_923532 378 135 immuno- immuno- NN 10_1101-2020_01_28_923532 378 136 therapy therapy NN 10_1101-2020_01_28_923532 378 137 63,64 63,64 CD 10_1101-2020_01_28_923532 378 138 GSE118828 GSE118828 NNP 10_1101-2020_01_28_923532 378 139 Ovarian Ovarian NNP 10_1101-2020_01_28_923532 378 140 1415(11 1415(11 CD 10_1101-2020_01_28_923532 378 141 primary primary NN 10_1101-2020_01_28_923532 378 142 ) ) -RRB- 10_1101-2020_01_28_923532 378 143 973 973 CD 10_1101-2020_01_28_923532 378 144 ( ( -LRB- 10_1101-2020_01_28_923532 378 145 5 5 CD 10_1101-2020_01_28_923532 378 146 metastasis metastasis NN 10_1101-2020_01_28_923532 378 147 ) ) -RRB- 10_1101-2020_01_28_923532 378 148 578(2 578(2 NN 10_1101-2020_01_28_923532 378 149 ) ) -RRB- 10_1101-2020_01_28_923532 378 150 No no DT 10_1101-2020_01_28_923532 378 151 72 72 CD 10_1101-2020_01_28_923532 378 152 GSE67980 GSE67980 NNP 10_1101-2020_01_28_923532 378 153 Prostate Prostate NNP 10_1101-2020_01_28_923532 378 154 124(21 124(21 CD 10_1101-2020_01_28_923532 378 155 ) ) -RRB- 10_1101-2020_01_28_923532 378 156 -- -- : 10_1101-2020_01_28_923532 378 157 Metastasis metastasis NN 10_1101-2020_01_28_923532 378 158 or or CC 10_1101-2020_01_28_923532 378 159 not not RB 10_1101-2020_01_28_923532 378 160 73 73 CD 10_1101-2020_01_28_923532 378 161 E E NNP 10_1101-2020_01_28_923532 378 162 - - NNP 10_1101-2020_01_28_923532 378 163 MTAB- MTAB- NNP 10_1101-2020_01_28_923532 378 164 6149 6149 CD 10_1101-2020_01_28_923532 378 165 Lung Lung NNP 10_1101-2020_01_28_923532 378 166 7351(5 7351(5 CD 10_1101-2020_01_28_923532 378 167 ) ) -RRB- 10_1101-2020_01_28_923532 378 168 2730(5 2730(5 CD 10_1101-2020_01_28_923532 378 169 ) ) -RRB- 10_1101-2020_01_28_923532 378 170 No no DT 10_1101-2020_01_28_923532 378 171 74 74 CD 10_1101-2020_01_28_923532 378 172 105 105 CD 10_1101-2020_01_28_923532 378 173 and and CC 10_1101-2020_01_28_923532 378 174 is be VBZ 10_1101-2020_01_28_923532 378 175 also also RB 10_1101-2020_01_28_923532 378 176 made make VBN 10_1101-2020_01_28_923532 378 177 available available JJ 10_1101-2020_01_28_923532 378 178 for for IN 10_1101-2020_01_28_923532 378 179 use use NN 10_1101-2020_01_28_923532 378 180 under under IN 10_1101-2020_01_28_923532 378 181 a a DT 10_1101-2020_01_28_923532 378 182 CC0 CC0 NNP 10_1101-2020_01_28_923532 378 183 license license NN 10_1101-2020_01_28_923532 378 184 . . . 10_1101-2020_01_28_923532 379 1 ( ( -LRB- 10_1101-2020_01_28_923532 379 2 which which WDT 10_1101-2020_01_28_923532 379 3 was be VBD 10_1101-2020_01_28_923532 379 4 not not RB 10_1101-2020_01_28_923532 379 5 certified certify VBN 10_1101-2020_01_28_923532 379 6 by by IN 10_1101-2020_01_28_923532 379 7 peer peer NN 10_1101-2020_01_28_923532 379 8 review review NN 10_1101-2020_01_28_923532 379 9 ) ) -RRB- 10_1101-2020_01_28_923532 379 10 is be VBZ 10_1101-2020_01_28_923532 379 11 the the DT 10_1101-2020_01_28_923532 379 12 author author NN 10_1101-2020_01_28_923532 379 13 / / SYM 10_1101-2020_01_28_923532 379 14 funder funder NN 10_1101-2020_01_28_923532 379 15 . . . 10_1101-2020_01_28_923532 380 1 This this DT 10_1101-2020_01_28_923532 380 2 article article NN 10_1101-2020_01_28_923532 380 3 is be VBZ 10_1101-2020_01_28_923532 380 4 a a DT 10_1101-2020_01_28_923532 380 5 US US NNP 10_1101-2020_01_28_923532 380 6 Government Government NNP 10_1101-2020_01_28_923532 380 7 work work NN 10_1101-2020_01_28_923532 380 8 . . . 10_1101-2020_01_28_923532 381 1 It -PRON- PRP 10_1101-2020_01_28_923532 381 2 is be VBZ 10_1101-2020_01_28_923532 381 3 not not RB 10_1101-2020_01_28_923532 381 4 subject subject JJ 10_1101-2020_01_28_923532 381 5 to to IN 10_1101-2020_01_28_923532 381 6 copyright copyright NN 10_1101-2020_01_28_923532 381 7 under under IN 10_1101-2020_01_28_923532 381 8 17 17 CD 10_1101-2020_01_28_923532 381 9 USC usc NN 10_1101-2020_01_28_923532 381 10 The the DT 10_1101-2020_01_28_923532 381 11 copyright copyright NN 10_1101-2020_01_28_923532 381 12 holder holder NN 10_1101-2020_01_28_923532 381 13 for for IN 10_1101-2020_01_28_923532 381 14 this this DT 10_1101-2020_01_28_923532 381 15 preprintthis preprintthis NN 10_1101-2020_01_28_923532 381 16 version version NN 10_1101-2020_01_28_923532 381 17 posted post VBD 10_1101-2020_01_28_923532 381 18 February February NNP 10_1101-2020_01_28_923532 381 19 12 12 CD 10_1101-2020_01_28_923532 381 20 , , , 10_1101-2020_01_28_923532 381 21 2021 2021 CD 10_1101-2020_01_28_923532 381 22 . . . 10_1101-2020_01_28_923532 381 23 ; ; : 10_1101-2020_01_28_923532 381 24 https://doi.org/10.1101/2020.01.28.923532doi https://doi.org/10.1101/2020.01.28.923532doi ADD 10_1101-2020_01_28_923532 381 25 : : : 10_1101-2020_01_28_923532 381 26 bioRxiv biorxiv VB 10_1101-2020_01_28_923532 381 27 preprint preprint NN 10_1101-2020_01_28_923532 381 28 https://doi.org/10.1101/2020.01.28.923532 https://doi.org/10.1101/2020.01.28.923532 UH 10_1101-2020_01_28_923532 381 29 30 30 CD 10_1101-2020_01_28_923532 381 30 Sampling Sampling NNP 10_1101-2020_01_28_923532 381 31 Process Process NNP 10_1101-2020_01_28_923532 381 32 to to IN 10_1101-2020_01_28_923532 381 33 Generate Generate NNP 10_1101-2020_01_28_923532 381 34 Replicates Replicates NNPS 10_1101-2020_01_28_923532 381 35 of of IN 10_1101-2020_01_28_923532 381 36 Data Data NNP 10_1101-2020_01_28_923532 381 37 Sets Sets NNPS 10_1101-2020_01_28_923532 381 38 As as IN 10_1101-2020_01_28_923532 381 39 shown show VBN 10_1101-2020_01_28_923532 381 40 in in IN 10_1101-2020_01_28_923532 381 41 Table table NN 10_1101-2020_01_28_923532 381 42 1 1 CD 10_1101-2020_01_28_923532 381 43 , , , 10_1101-2020_01_28_923532 381 44 the the DT 10_1101-2020_01_28_923532 381 45 number number NN 10_1101-2020_01_28_923532 381 46 of of IN 10_1101-2020_01_28_923532 381 47 cells cell NNS 10_1101-2020_01_28_923532 381 48 available available JJ 10_1101-2020_01_28_923532 381 49 in in IN 10_1101-2020_01_28_923532 381 50 the the DT 10_1101-2020_01_28_923532 381 51 different different JJ 10_1101-2020_01_28_923532 381 52 single single JJ 10_1101-2020_01_28_923532 381 53 - - HYPH 10_1101-2020_01_28_923532 381 54 cell cell NN 10_1101-2020_01_28_923532 381 55 data data NN 10_1101-2020_01_28_923532 381 56 sets set NNS 10_1101-2020_01_28_923532 381 57 varies vary VBZ 10_1101-2020_01_28_923532 381 58 by by IN 10_1101-2020_01_28_923532 381 59 three three CD 10_1101-2020_01_28_923532 381 60 orders order NNS 10_1101-2020_01_28_923532 381 61 of of IN 10_1101-2020_01_28_923532 381 62 magnitude magnitude NN 10_1101-2020_01_28_923532 381 63 ; ; : 10_1101-2020_01_28_923532 381 64 to to TO 10_1101-2020_01_28_923532 381 65 enable enable VB 10_1101-2020_01_28_923532 381 66 us -PRON- PRP 10_1101-2020_01_28_923532 381 67 to to TO 10_1101-2020_01_28_923532 381 68 compare compare VB 10_1101-2020_01_28_923532 381 69 the the DT 10_1101-2020_01_28_923532 381 70 findings finding NNS 10_1101-2020_01_28_923532 381 71 across across IN 10_1101-2020_01_28_923532 381 72 different different JJ 10_1101-2020_01_28_923532 381 73 data data NN 10_1101-2020_01_28_923532 381 74 sets set NNS 10_1101-2020_01_28_923532 381 75 and and CC 10_1101-2020_01_28_923532 381 76 cancer cancer NN 10_1101-2020_01_28_923532 381 77 types type NNS 10_1101-2020_01_28_923532 381 78 on on IN 10_1101-2020_01_28_923532 381 79 more more RBR 10_1101-2020_01_28_923532 381 80 equal equal JJ 10_1101-2020_01_28_923532 381 81 footing footing NN 10_1101-2020_01_28_923532 381 82 , , , 10_1101-2020_01_28_923532 381 83 we -PRON- PRP 10_1101-2020_01_28_923532 381 84 employed employ VBD 10_1101-2020_01_28_923532 381 85 sampling sampling NN 10_1101-2020_01_28_923532 381 86 from from IN 10_1101-2020_01_28_923532 381 87 the the DT 10_1101-2020_01_28_923532 381 88 larger large JJR 10_1101-2020_01_28_923532 381 89 sets set NNS 10_1101-2020_01_28_923532 381 90 to to TO 10_1101-2020_01_28_923532 381 91 reduce reduce VB 10_1101-2020_01_28_923532 381 92 this this DT 10_1101-2020_01_28_923532 381 93 difference difference NN 10_1101-2020_01_28_923532 381 94 to to IN 10_1101-2020_01_28_923532 381 95 one one CD 10_1101-2020_01_28_923532 381 96 order order NN 10_1101-2020_01_28_923532 381 97 of of IN 10_1101-2020_01_28_923532 381 98 magnitude magnitude NN 10_1101-2020_01_28_923532 381 99 . . . 10_1101-2020_01_28_923532 382 1 This this DT 10_1101-2020_01_28_923532 382 2 goes go VBZ 10_1101-2020_01_28_923532 382 3 along along RP 10_1101-2020_01_28_923532 382 4 with with IN 10_1101-2020_01_28_923532 382 5 the the DT 10_1101-2020_01_28_923532 382 6 data datum NNS 10_1101-2020_01_28_923532 382 7 collection collection NN 10_1101-2020_01_28_923532 382 8 process process NN 10_1101-2020_01_28_923532 382 9 in in IN 10_1101-2020_01_28_923532 382 10 the the DT 10_1101-2020_01_28_923532 382 11 real real JJ 10_1101-2020_01_28_923532 382 12 world world NN 10_1101-2020_01_28_923532 382 13 as as IN 10_1101-2020_01_28_923532 382 14 we -PRON- PRP 10_1101-2020_01_28_923532 382 15 might may MD 10_1101-2020_01_28_923532 382 16 get get VB 10_1101-2020_01_28_923532 382 17 measurements measurement NNS 10_1101-2020_01_28_923532 382 18 from from IN 10_1101-2020_01_28_923532 382 19 different different JJ 10_1101-2020_01_28_923532 382 20 samples sample NNS 10_1101-2020_01_28_923532 382 21 at at IN 10_1101-2020_01_28_923532 382 22 different different JJ 10_1101-2020_01_28_923532 382 23 times time NNS 10_1101-2020_01_28_923532 382 24 . . . 10_1101-2020_01_28_923532 383 1 Suppose suppose VB 10_1101-2020_01_28_923532 383 2 for for IN 10_1101-2020_01_28_923532 383 3 a a DT 10_1101-2020_01_28_923532 383 4 data data NN 10_1101-2020_01_28_923532 383 5 set set NN 10_1101-2020_01_28_923532 383 6 we -PRON- PRP 10_1101-2020_01_28_923532 383 7 have have VBP 10_1101-2020_01_28_923532 383 8 𝑛 𝑛 NN 10_1101-2020_01_28_923532 383 9 genes gene NNS 10_1101-2020_01_28_923532 383 10 , , , 10_1101-2020_01_28_923532 383 11 and and CC 10_1101-2020_01_28_923532 383 12 𝑚 𝑚 DT 10_1101-2020_01_28_923532 383 13 cells cell NNS 10_1101-2020_01_28_923532 383 14 comprising comprise VBG 10_1101-2020_01_28_923532 383 15 tumor tumor NN 10_1101-2020_01_28_923532 383 16 cells cell NNS 10_1101-2020_01_28_923532 383 17 and and CC 10_1101-2020_01_28_923532 383 18 non non JJ 10_1101-2020_01_28_923532 383 19 - - JJ 10_1101-2020_01_28_923532 383 20 tumor tumor JJ 10_1101-2020_01_28_923532 383 21 cells cell NNS 10_1101-2020_01_28_923532 383 22 . . . 10_1101-2020_01_28_923532 384 1 We -PRON- PRP 10_1101-2020_01_28_923532 384 2 want want VBP 10_1101-2020_01_28_923532 384 3 to to TO 10_1101-2020_01_28_923532 384 4 select select VB 10_1101-2020_01_28_923532 384 5 a a DT 10_1101-2020_01_28_923532 384 6 subset subset NN 10_1101-2020_01_28_923532 384 7 of of IN 10_1101-2020_01_28_923532 384 8 𝑚 𝑚 DT 10_1101-2020_01_28_923532 384 9 ′ ′ XX 10_1101-2020_01_28_923532 384 10 < < XX 10_1101-2020_01_28_923532 384 11 𝑚 𝑚 NN 10_1101-2020_01_28_923532 384 12 cells cell NNS 10_1101-2020_01_28_923532 384 13 . . . 10_1101-2020_01_28_923532 385 1 We -PRON- PRP 10_1101-2020_01_28_923532 385 2 select select VBP 10_1101-2020_01_28_923532 385 3 a a DT 10_1101-2020_01_28_923532 385 4 set set NN 10_1101-2020_01_28_923532 385 5 of of IN 10_1101-2020_01_28_923532 385 6 𝑚′ 𝑚′ NN 10_1101-2020_01_28_923532 385 7 cells cell NNS 10_1101-2020_01_28_923532 385 8 uniformly uniformly RB 10_1101-2020_01_28_923532 385 9 at at IN 10_1101-2020_01_28_923532 385 10 random random JJ 10_1101-2020_01_28_923532 385 11 without without IN 10_1101-2020_01_28_923532 385 12 replacement replacement NN 10_1101-2020_01_28_923532 385 13 from from IN 10_1101-2020_01_28_923532 385 14 among among IN 10_1101-2020_01_28_923532 385 15 all all DT 10_1101-2020_01_28_923532 385 16 cells cell NNS 10_1101-2020_01_28_923532 385 17 . . . 10_1101-2020_01_28_923532 386 1 Then then RB 10_1101-2020_01_28_923532 386 2 we -PRON- PRP 10_1101-2020_01_28_923532 386 3 partition partition VBP 10_1101-2020_01_28_923532 386 4 the the DT 10_1101-2020_01_28_923532 386 5 selected select VBN 10_1101-2020_01_28_923532 386 6 cells cell NNS 10_1101-2020_01_28_923532 386 7 into into IN 10_1101-2020_01_28_923532 386 8 𝑚𝑡 𝑚𝑡 NNP 10_1101-2020_01_28_923532 386 9 ′ ′ CD 10_1101-2020_01_28_923532 386 10 tumor tumor NN 10_1101-2020_01_28_923532 386 11 cells cell NNS 10_1101-2020_01_28_923532 386 12 and and CC 10_1101-2020_01_28_923532 386 13 𝑚𝑛 𝑚𝑛 NNP 10_1101-2020_01_28_923532 386 14 ′ ′ NFP 10_1101-2020_01_28_923532 386 15 non non JJ 10_1101-2020_01_28_923532 386 16 - - JJ 10_1101-2020_01_28_923532 386 17 tumor tumor JJ 10_1101-2020_01_28_923532 386 18 cells cell NNS 10_1101-2020_01_28_923532 386 19 to to TO 10_1101-2020_01_28_923532 386 20 define define VB 10_1101-2020_01_28_923532 386 21 one one CD 10_1101-2020_01_28_923532 386 22 replicate replicate NN 10_1101-2020_01_28_923532 386 23 . . . 10_1101-2020_01_28_923532 387 1 In in IN 10_1101-2020_01_28_923532 387 2 most most JJS 10_1101-2020_01_28_923532 387 3 of of IN 10_1101-2020_01_28_923532 387 4 the the DT 10_1101-2020_01_28_923532 387 5 computational computational JJ 10_1101-2020_01_28_923532 387 6 experiments experiment NNS 10_1101-2020_01_28_923532 387 7 shown show VBN 10_1101-2020_01_28_923532 387 8 we -PRON- PRP 10_1101-2020_01_28_923532 387 9 used use VBD 10_1101-2020_01_28_923532 387 10 20 20 CD 10_1101-2020_01_28_923532 387 11 replicates replicate NNS 10_1101-2020_01_28_923532 387 12 and and CC 10_1101-2020_01_28_923532 387 13 we -PRON- PRP 10_1101-2020_01_28_923532 387 14 report report VBP 10_1101-2020_01_28_923532 387 15 either either CC 10_1101-2020_01_28_923532 387 16 the the DT 10_1101-2020_01_28_923532 387 17 arithmetic arithmetic JJ 10_1101-2020_01_28_923532 387 18 mean mean NN 10_1101-2020_01_28_923532 387 19 or or CC 10_1101-2020_01_28_923532 387 20 entire entire JJ 10_1101-2020_01_28_923532 387 21 distribution distribution NN 10_1101-2020_01_28_923532 387 22 of of IN 10_1101-2020_01_28_923532 387 23 quantities quantity NNS 10_1101-2020_01_28_923532 387 24 such such JJ 10_1101-2020_01_28_923532 387 25 as as IN 10_1101-2020_01_28_923532 387 26 the the DT 10_1101-2020_01_28_923532 387 27 CTS CTS NNP 10_1101-2020_01_28_923532 387 28 size size NN 10_1101-2020_01_28_923532 387 29 . . . 10_1101-2020_01_28_923532 388 1 Considering consider VBG 10_1101-2020_01_28_923532 388 2 a a DT 10_1101-2020_01_28_923532 388 3 previously previously RB 10_1101-2020_01_28_923532 388 4 defined define VBN 10_1101-2020_01_28_923532 388 5 set set NN 10_1101-2020_01_28_923532 388 6 of of IN 10_1101-2020_01_28_923532 388 7 target target NN 10_1101-2020_01_28_923532 388 8 genes gene NNS 10_1101-2020_01_28_923532 388 9 and and CC 10_1101-2020_01_28_923532 388 10 of of IN 10_1101-2020_01_28_923532 388 11 HPA HPA NNP 10_1101-2020_01_28_923532 388 12 gene gene NN 10_1101-2020_01_28_923532 388 13 expression expression NN 10_1101-2020_01_28_923532 388 14 across across IN 10_1101-2020_01_28_923532 388 15 different different JJ 10_1101-2020_01_28_923532 388 16 normal normal JJ 10_1101-2020_01_28_923532 388 17 tissues tissue NNS 10_1101-2020_01_28_923532 388 18 The the DT 10_1101-2020_01_28_923532 388 19 general general JJ 10_1101-2020_01_28_923532 388 20 aim aim NN 10_1101-2020_01_28_923532 388 21 of of IN 10_1101-2020_01_28_923532 388 22 our -PRON- PRP$ 10_1101-2020_01_28_923532 388 23 methods method NNS 10_1101-2020_01_28_923532 388 24 is be VBZ 10_1101-2020_01_28_923532 388 25 to to TO 10_1101-2020_01_28_923532 388 26 target target VB 10_1101-2020_01_28_923532 388 27 the the DT 10_1101-2020_01_28_923532 388 28 cancer cancer NN 10_1101-2020_01_28_923532 388 29 cells cell NNS 10_1101-2020_01_28_923532 388 30 while while IN 10_1101-2020_01_28_923532 388 31 sparing spare VBG 10_1101-2020_01_28_923532 388 32 the the DT 10_1101-2020_01_28_923532 388 33 adjacent adjacent JJ 10_1101-2020_01_28_923532 388 34 non- non- NN 10_1101-2020_01_28_923532 388 35 cancer cancer NN 10_1101-2020_01_28_923532 388 36 cells cell NNS 10_1101-2020_01_28_923532 388 37 as as RB 10_1101-2020_01_28_923532 388 38 much much RB 10_1101-2020_01_28_923532 388 39 as as IN 10_1101-2020_01_28_923532 388 40 possible possible JJ 10_1101-2020_01_28_923532 388 41 . . . 10_1101-2020_01_28_923532 389 1 A a DT 10_1101-2020_01_28_923532 389 2 related related JJ 10_1101-2020_01_28_923532 389 3 concern concern NN 10_1101-2020_01_28_923532 389 4 is be VBZ 10_1101-2020_01_28_923532 389 5 that that IN 10_1101-2020_01_28_923532 389 6 genes gene NNS 10_1101-2020_01_28_923532 389 7 within within IN 10_1101-2020_01_28_923532 389 8 the the DT 10_1101-2020_01_28_923532 389 9 target target NN 10_1101-2020_01_28_923532 389 10 set set VBN 10_1101-2020_01_28_923532 389 11 could could MD 10_1101-2020_01_28_923532 389 12 be be VB 10_1101-2020_01_28_923532 389 13 expressed express VBN 10_1101-2020_01_28_923532 389 14 at at IN 10_1101-2020_01_28_923532 389 15 high high JJ 10_1101-2020_01_28_923532 389 16 levels level NNS 10_1101-2020_01_28_923532 389 17 in in IN 10_1101-2020_01_28_923532 389 18 other other JJ 10_1101-2020_01_28_923532 389 19 normal normal JJ 10_1101-2020_01_28_923532 389 20 tissues tissue NNS 10_1101-2020_01_28_923532 389 21 that that WDT 10_1101-2020_01_28_923532 389 22 are be VBP 10_1101-2020_01_28_923532 389 23 not not RB 10_1101-2020_01_28_923532 389 24 part part NN 10_1101-2020_01_28_923532 389 25 of of IN 10_1101-2020_01_28_923532 389 26 the the DT 10_1101-2020_01_28_923532 389 27 non non JJ 10_1101-2020_01_28_923532 389 28 - - JJ 10_1101-2020_01_28_923532 389 29 cancer cancer JJ 10_1101-2020_01_28_923532 389 30 cells cell NNS 10_1101-2020_01_28_923532 389 31 from from IN 10_1101-2020_01_28_923532 389 32 the the DT 10_1101-2020_01_28_923532 389 33 tumor tumor NN 10_1101-2020_01_28_923532 389 34 microenvironment microenvironment NN 10_1101-2020_01_28_923532 389 35 included include VBN 10_1101-2020_01_28_923532 389 36 in in IN 10_1101-2020_01_28_923532 389 37 the the DT 10_1101-2020_01_28_923532 389 38 input input NN 10_1101-2020_01_28_923532 389 39 data datum NNS 10_1101-2020_01_28_923532 389 40 sets set NNS 10_1101-2020_01_28_923532 389 41 . . . 10_1101-2020_01_28_923532 390 1 One one CD 10_1101-2020_01_28_923532 390 2 way way NN 10_1101-2020_01_28_923532 390 3 to to TO 10_1101-2020_01_28_923532 390 4 address address VB 10_1101-2020_01_28_923532 390 5 this this DT 10_1101-2020_01_28_923532 390 6 problem problem NN 10_1101-2020_01_28_923532 390 7 is be VBZ 10_1101-2020_01_28_923532 390 8 to to TO 10_1101-2020_01_28_923532 390 9 identify identify VB 10_1101-2020_01_28_923532 390 10 genes gene NNS 10_1101-2020_01_28_923532 390 11 that that WDT 10_1101-2020_01_28_923532 390 12 have have VBP 10_1101-2020_01_28_923532 390 13 low low JJ 10_1101-2020_01_28_923532 390 14 expression expression NN 10_1101-2020_01_28_923532 390 15 in in IN 10_1101-2020_01_28_923532 390 16 the the DT 10_1101-2020_01_28_923532 390 17 majority majority NN 10_1101-2020_01_28_923532 390 18 of of IN 10_1101-2020_01_28_923532 390 19 the the DT 10_1101-2020_01_28_923532 390 20 tissues tissue NNS 10_1101-2020_01_28_923532 390 21 and and CC 10_1101-2020_01_28_923532 390 22 to to TO 10_1101-2020_01_28_923532 390 23 use use VB 10_1101-2020_01_28_923532 390 24 them -PRON- PRP 10_1101-2020_01_28_923532 390 25 to to TO 10_1101-2020_01_28_923532 390 26 obtain obtain VB 10_1101-2020_01_28_923532 390 27 a a DT 10_1101-2020_01_28_923532 390 28 target target NN 10_1101-2020_01_28_923532 390 29 set set VBN 10_1101-2020_01_28_923532 390 30 . . . 10_1101-2020_01_28_923532 391 1 This this DT 10_1101-2020_01_28_923532 391 2 approach approach NN 10_1101-2020_01_28_923532 391 3 has have VBZ 10_1101-2020_01_28_923532 391 4 been be VBN 10_1101-2020_01_28_923532 391 5 pioneered pioneer VBN 10_1101-2020_01_28_923532 391 6 in in IN 10_1101-2020_01_28_923532 391 7 a a DT 10_1101-2020_01_28_923532 391 8 recent recent JJ 10_1101-2020_01_28_923532 391 9 paper paper NN 10_1101-2020_01_28_923532 391 10 on on IN 10_1101-2020_01_28_923532 391 11 selecting select VBG 10_1101-2020_01_28_923532 391 12 gene gene NN 10_1101-2020_01_28_923532 391 13 targets target NNS 10_1101-2020_01_28_923532 391 14 suitable suitable JJ 10_1101-2020_01_28_923532 391 15 for for IN 10_1101-2020_01_28_923532 391 16 CAR CAR NNP 10_1101-2020_01_28_923532 391 17 - - HYPH 10_1101-2020_01_28_923532 391 18 T t NN 10_1101-2020_01_28_923532 391 19 therapy25 therapy25 NN 10_1101-2020_01_28_923532 391 20 . . . 10_1101-2020_01_28_923532 392 1 The the DT 10_1101-2020_01_28_923532 392 2 authors author NNS 10_1101-2020_01_28_923532 392 3 selected select VBD 10_1101-2020_01_28_923532 392 4 533 533 CD 10_1101-2020_01_28_923532 392 5 candidate candidate NN 10_1101-2020_01_28_923532 392 6 genes gene NNS 10_1101-2020_01_28_923532 392 7 that that WDT 10_1101-2020_01_28_923532 392 8 they -PRON- PRP 10_1101-2020_01_28_923532 392 9 judged judge VBD 10_1101-2020_01_28_923532 392 10 could could MD 10_1101-2020_01_28_923532 392 11 be be VB 10_1101-2020_01_28_923532 392 12 reasonable reasonable JJ 10_1101-2020_01_28_923532 392 13 targets target NNS 10_1101-2020_01_28_923532 392 14 for for IN 10_1101-2020_01_28_923532 392 15 CAR car NN 10_1101-2020_01_28_923532 392 16 - - HYPH 10_1101-2020_01_28_923532 392 17 T. t. NN 10_1101-2020_01_28_923532 393 1 They -PRON- PRP 10_1101-2020_01_28_923532 393 2 made make VBD 10_1101-2020_01_28_923532 393 3 this this DT 10_1101-2020_01_28_923532 393 4 selection selection NN 10_1101-2020_01_28_923532 393 5 based base VBN 10_1101-2020_01_28_923532 393 6 on on IN 10_1101-2020_01_28_923532 393 7 expression expression NN 10_1101-2020_01_28_923532 393 8 data datum NNS 10_1101-2020_01_28_923532 393 9 from from IN 10_1101-2020_01_28_923532 393 10 the the DT 10_1101-2020_01_28_923532 393 11 Human Human NNP 10_1101-2020_01_28_923532 393 12 Protein Protein NNP 10_1101-2020_01_28_923532 393 13 Atlas75 Atlas75 NNP 10_1101-2020_01_28_923532 393 14 and and CC 10_1101-2020_01_28_923532 393 15 the the DT 10_1101-2020_01_28_923532 393 16 Genotype Genotype NNP 10_1101-2020_01_28_923532 393 17 - - HYPH 10_1101-2020_01_28_923532 393 18 Tissue Tissue NNP 10_1101-2020_01_28_923532 393 19 Expression Expression NNP 10_1101-2020_01_28_923532 393 20 consortium consortium NN 10_1101-2020_01_28_923532 393 21 ( ( -LRB- 10_1101-2020_01_28_923532 393 22 GTEx)76 GTEx)76 NNP 10_1101-2020_01_28_923532 393 23 , , , 10_1101-2020_01_28_923532 393 24 which which WDT 10_1101-2020_01_28_923532 393 25 have have VBP 10_1101-2020_01_28_923532 393 26 expression expression NN 10_1101-2020_01_28_923532 393 27 information information NN 10_1101-2020_01_28_923532 393 28 from from IN 10_1101-2020_01_28_923532 393 29 multiple multiple JJ 10_1101-2020_01_28_923532 393 30 tissues tissue NNS 10_1101-2020_01_28_923532 393 31 which which WDT 10_1101-2020_01_28_923532 393 32 was be VBD 10_1101-2020_01_28_923532 393 33 used use VBN 10_1101-2020_01_28_923532 393 34 to to TO 10_1101-2020_01_28_923532 393 35 identify identify VB 10_1101-2020_01_28_923532 393 36 low low JJ 10_1101-2020_01_28_923532 393 37 expressed express VBN 10_1101-2020_01_28_923532 393 38 target target NN 10_1101-2020_01_28_923532 393 39 genes gene NNS 10_1101-2020_01_28_923532 393 40 . . . 10_1101-2020_01_28_923532 394 1 McKay McKay NNP 10_1101-2020_01_28_923532 394 2 et et NNP 10_1101-2020_01_28_923532 394 3 al.25 al.25 IN 10_1101-2020_01_28_923532 394 4 used use VBD 10_1101-2020_01_28_923532 394 5 a a DT 10_1101-2020_01_28_923532 394 6 threshold threshold NN 10_1101-2020_01_28_923532 394 7 of of IN 10_1101-2020_01_28_923532 394 8 15 15 CD 10_1101-2020_01_28_923532 394 9 TPM TPM NNP 10_1101-2020_01_28_923532 394 10 units unit NNS 10_1101-2020_01_28_923532 394 11 of of IN 10_1101-2020_01_28_923532 394 12 expression expression NN 10_1101-2020_01_28_923532 394 13 ( ( -LRB- 10_1101-2020_01_28_923532 394 14 written write VBN 10_1101-2020_01_28_923532 394 15 in in IN 10_1101-2020_01_28_923532 394 16 their -PRON- PRP$ 10_1101-2020_01_28_923532 394 17 work work NN 10_1101-2020_01_28_923532 394 18 as as IN 10_1101-2020_01_28_923532 394 19 log2(TPM+1 log2(TPM+1 NNP 10_1101-2020_01_28_923532 394 20 ) ) -RRB- 10_1101-2020_01_28_923532 394 21 ≤ ≤ NNP 10_1101-2020_01_28_923532 394 22 4 4 CD 10_1101-2020_01_28_923532 394 23 ) ) -RRB- 10_1101-2020_01_28_923532 394 24 , , , 10_1101-2020_01_28_923532 394 25 but but CC 10_1101-2020_01_28_923532 394 26 they -PRON- PRP 10_1101-2020_01_28_923532 394 27 allowed allow VBD 10_1101-2020_01_28_923532 394 28 a a DT 10_1101-2020_01_28_923532 394 29 small small JJ 10_1101-2020_01_28_923532 394 30 number number NN 10_1101-2020_01_28_923532 394 31 of of IN 10_1101-2020_01_28_923532 394 32 tissues tissue NNS 10_1101-2020_01_28_923532 394 33 to to TO 10_1101-2020_01_28_923532 394 34 exceed exceed VB 10_1101-2020_01_28_923532 394 35 this this DT 10_1101-2020_01_28_923532 394 36 threshold threshold NN 10_1101-2020_01_28_923532 394 37 . . . 10_1101-2020_01_28_923532 395 1 Instead instead RB 10_1101-2020_01_28_923532 395 2 , , , 10_1101-2020_01_28_923532 395 3 we -PRON- PRP 10_1101-2020_01_28_923532 395 4 used use VBD 10_1101-2020_01_28_923532 395 5 quantitative quantitative JJ 10_1101-2020_01_28_923532 395 6 levels level NNS 10_1101-2020_01_28_923532 395 7 of of IN 10_1101-2020_01_28_923532 395 8 expression expression NN 10_1101-2020_01_28_923532 395 9 for for IN 10_1101-2020_01_28_923532 395 10 finer fine JJR 10_1101-2020_01_28_923532 395 11 granularity granularity NN 10_1101-2020_01_28_923532 395 12 in in IN 10_1101-2020_01_28_923532 395 13 analysis analysis NN 10_1101-2020_01_28_923532 395 14 , , , 10_1101-2020_01_28_923532 395 15 as as IN 10_1101-2020_01_28_923532 395 16 described describe VBN 10_1101-2020_01_28_923532 395 17 in in IN 10_1101-2020_01_28_923532 395 18 the the DT 10_1101-2020_01_28_923532 395 19 next next JJ 10_1101-2020_01_28_923532 395 20 subsection subsection NN 10_1101-2020_01_28_923532 395 21 . . . 10_1101-2020_01_28_923532 396 1 One one CD 10_1101-2020_01_28_923532 396 2 clinical clinical JJ 10_1101-2020_01_28_923532 396 3 difference difference NN 10_1101-2020_01_28_923532 396 4 is be VBZ 10_1101-2020_01_28_923532 396 5 that that IN 10_1101-2020_01_28_923532 396 6 we -PRON- PRP 10_1101-2020_01_28_923532 396 7 looked look VBD 10_1101-2020_01_28_923532 396 8 only only RB 10_1101-2020_01_28_923532 396 9 at at IN 10_1101-2020_01_28_923532 396 10 adult adult NN 10_1101-2020_01_28_923532 396 11 tissues tissue NNS 10_1101-2020_01_28_923532 396 12 because because IN 10_1101-2020_01_28_923532 396 13 we -PRON- PRP 10_1101-2020_01_28_923532 396 14 are be VBP 10_1101-2020_01_28_923532 396 15 105 105 CD 10_1101-2020_01_28_923532 396 16 and and CC 10_1101-2020_01_28_923532 396 17 is be VBZ 10_1101-2020_01_28_923532 396 18 also also RB 10_1101-2020_01_28_923532 396 19 made make VBN 10_1101-2020_01_28_923532 396 20 available available JJ 10_1101-2020_01_28_923532 396 21 for for IN 10_1101-2020_01_28_923532 396 22 use use NN 10_1101-2020_01_28_923532 396 23 under under IN 10_1101-2020_01_28_923532 396 24 a a DT 10_1101-2020_01_28_923532 396 25 CC0 CC0 NNP 10_1101-2020_01_28_923532 396 26 license license NN 10_1101-2020_01_28_923532 396 27 . . . 10_1101-2020_01_28_923532 397 1 ( ( -LRB- 10_1101-2020_01_28_923532 397 2 which which WDT 10_1101-2020_01_28_923532 397 3 was be VBD 10_1101-2020_01_28_923532 397 4 not not RB 10_1101-2020_01_28_923532 397 5 certified certify VBN 10_1101-2020_01_28_923532 397 6 by by IN 10_1101-2020_01_28_923532 397 7 peer peer NN 10_1101-2020_01_28_923532 397 8 review review NN 10_1101-2020_01_28_923532 397 9 ) ) -RRB- 10_1101-2020_01_28_923532 397 10 is be VBZ 10_1101-2020_01_28_923532 397 11 the the DT 10_1101-2020_01_28_923532 397 12 author author NN 10_1101-2020_01_28_923532 397 13 / / SYM 10_1101-2020_01_28_923532 397 14 funder funder NN 10_1101-2020_01_28_923532 397 15 . . . 10_1101-2020_01_28_923532 398 1 This this DT 10_1101-2020_01_28_923532 398 2 article article NN 10_1101-2020_01_28_923532 398 3 is be VBZ 10_1101-2020_01_28_923532 398 4 a a DT 10_1101-2020_01_28_923532 398 5 US US NNP 10_1101-2020_01_28_923532 398 6 Government Government NNP 10_1101-2020_01_28_923532 398 7 work work NN 10_1101-2020_01_28_923532 398 8 . . . 10_1101-2020_01_28_923532 399 1 It -PRON- PRP 10_1101-2020_01_28_923532 399 2 is be VBZ 10_1101-2020_01_28_923532 399 3 not not RB 10_1101-2020_01_28_923532 399 4 subject subject JJ 10_1101-2020_01_28_923532 399 5 to to IN 10_1101-2020_01_28_923532 399 6 copyright copyright NN 10_1101-2020_01_28_923532 399 7 under under IN 10_1101-2020_01_28_923532 399 8 17 17 CD 10_1101-2020_01_28_923532 399 9 USC usc NN 10_1101-2020_01_28_923532 399 10 The the DT 10_1101-2020_01_28_923532 399 11 copyright copyright NN 10_1101-2020_01_28_923532 399 12 holder holder NN 10_1101-2020_01_28_923532 399 13 for for IN 10_1101-2020_01_28_923532 399 14 this this DT 10_1101-2020_01_28_923532 399 15 preprintthis preprintthis NN 10_1101-2020_01_28_923532 399 16 version version NN 10_1101-2020_01_28_923532 399 17 posted post VBD 10_1101-2020_01_28_923532 399 18 February February NNP 10_1101-2020_01_28_923532 399 19 12 12 CD 10_1101-2020_01_28_923532 399 20 , , , 10_1101-2020_01_28_923532 399 21 2021 2021 CD 10_1101-2020_01_28_923532 399 22 . . . 10_1101-2020_01_28_923532 399 23 ; ; : 10_1101-2020_01_28_923532 399 24 https://doi.org/10.1101/2020.01.28.923532doi https://doi.org/10.1101/2020.01.28.923532doi ADD 10_1101-2020_01_28_923532 399 25 : : : 10_1101-2020_01_28_923532 399 26 bioRxiv biorxiv VB 10_1101-2020_01_28_923532 399 27 preprint preprint NN 10_1101-2020_01_28_923532 399 28 https://doi.org/10.1101/2020.01.28.923532 https://doi.org/10.1101/2020.01.28.923532 UH 10_1101-2020_01_28_923532 399 29 31 31 CD 10_1101-2020_01_28_923532 399 30 analyzing analyze VBG 10_1101-2020_01_28_923532 399 31 adult adult NN 10_1101-2020_01_28_923532 399 32 tumors tumor NNS 10_1101-2020_01_28_923532 399 33 , , , 10_1101-2020_01_28_923532 399 34 while while IN 10_1101-2020_01_28_923532 399 35 CAR CAR NNP 10_1101-2020_01_28_923532 399 36 - - HYPH 10_1101-2020_01_28_923532 399 37 T t NN 10_1101-2020_01_28_923532 399 38 therapy therapy NN 10_1101-2020_01_28_923532 399 39 can can MD 10_1101-2020_01_28_923532 399 40 be be VB 10_1101-2020_01_28_923532 399 41 used use VBN 10_1101-2020_01_28_923532 399 42 for for IN 10_1101-2020_01_28_923532 399 43 either either DT 10_1101-2020_01_28_923532 399 44 childhood childhood NN 10_1101-2020_01_28_923532 399 45 or or CC 10_1101-2020_01_28_923532 399 46 adult adult NN 10_1101-2020_01_28_923532 399 47 tumors tumor NNS 10_1101-2020_01_28_923532 399 48 . . . 10_1101-2020_01_28_923532 400 1 The the DT 10_1101-2020_01_28_923532 400 2 reason reason NN 10_1101-2020_01_28_923532 400 3 to to TO 10_1101-2020_01_28_923532 400 4 focus focus VB 10_1101-2020_01_28_923532 400 5 on on IN 10_1101-2020_01_28_923532 400 6 cell cell NN 10_1101-2020_01_28_923532 400 7 - - HYPH 10_1101-2020_01_28_923532 400 8 surface surface NN 10_1101-2020_01_28_923532 400 9 receptors receptor NNS 10_1101-2020_01_28_923532 400 10 , , , 10_1101-2020_01_28_923532 400 11 as as IN 10_1101-2020_01_28_923532 400 12 suggested suggest VBN 10_1101-2020_01_28_923532 400 13 by by IN 10_1101-2020_01_28_923532 400 14 Dannenfelser Dannenfelser NNP 10_1101-2020_01_28_923532 400 15 et et NNP 10_1101-2020_01_28_923532 400 16 al.24 al.24 NNP 10_1101-2020_01_28_923532 400 17 , , , 10_1101-2020_01_28_923532 400 18 is be VBZ 10_1101-2020_01_28_923532 400 19 that that IN 10_1101-2020_01_28_923532 400 20 CAR- CAR- NNP 10_1101-2020_01_28_923532 400 21 T T NNP 10_1101-2020_01_28_923532 400 22 therapy therapy NN 10_1101-2020_01_28_923532 400 23 requires require VBZ 10_1101-2020_01_28_923532 400 24 a a DT 10_1101-2020_01_28_923532 400 25 cell cell NN 10_1101-2020_01_28_923532 400 26 - - HYPH 10_1101-2020_01_28_923532 400 27 surface surface NN 10_1101-2020_01_28_923532 400 28 target target NN 10_1101-2020_01_28_923532 400 29 that that WDT 10_1101-2020_01_28_923532 400 30 may may MD 10_1101-2020_01_28_923532 400 31 or or CC 10_1101-2020_01_28_923532 400 32 may may MD 10_1101-2020_01_28_923532 400 33 not not RB 10_1101-2020_01_28_923532 400 34 be be VB 10_1101-2020_01_28_923532 400 35 a a DT 10_1101-2020_01_28_923532 400 36 receptor receptor NN 10_1101-2020_01_28_923532 400 37 , , , 10_1101-2020_01_28_923532 400 38 antibody antibody NN 10_1101-2020_01_28_923532 400 39 technologies technology NNS 10_1101-2020_01_28_923532 400 40 require require VBP 10_1101-2020_01_28_923532 400 41 a a DT 10_1101-2020_01_28_923532 400 42 cell cell NN 10_1101-2020_01_28_923532 400 43 surface surface NN 10_1101-2020_01_28_923532 400 44 receptor receptor NN 10_1101-2020_01_28_923532 400 45 , , , 10_1101-2020_01_28_923532 400 46 and and CC 10_1101-2020_01_28_923532 400 47 the the DT 10_1101-2020_01_28_923532 400 48 ligand ligand NN 10_1101-2020_01_28_923532 400 49 - - HYPH 10_1101-2020_01_28_923532 400 50 mimicking mimic VBG 10_1101-2020_01_28_923532 400 51 peptide peptide NN 10_1101-2020_01_28_923532 400 52 nanotechnology nanotechnology NN 10_1101-2020_01_28_923532 400 53 that that IN 10_1101-2020_01_28_923532 400 54 we -PRON- PRP 10_1101-2020_01_28_923532 400 55 summarized summarize VBD 10_1101-2020_01_28_923532 400 56 in in IN 10_1101-2020_01_28_923532 400 57 the the DT 10_1101-2020_01_28_923532 400 58 Introduction introduction NN 10_1101-2020_01_28_923532 400 59 also also RB 10_1101-2020_01_28_923532 400 60 requires require VBZ 10_1101-2020_01_28_923532 400 61 cell cell NN 10_1101-2020_01_28_923532 400 62 surface surface NN 10_1101-2020_01_28_923532 400 63 receptor receptor NN 10_1101-2020_01_28_923532 400 64 targets target NNS 10_1101-2020_01_28_923532 400 65 . . . 10_1101-2020_01_28_923532 401 1 Construction construction NN 10_1101-2020_01_28_923532 401 2 of of IN 10_1101-2020_01_28_923532 401 3 target target NN 10_1101-2020_01_28_923532 401 4 gene gene NN 10_1101-2020_01_28_923532 401 5 sets set NNS 10_1101-2020_01_28_923532 401 6 that that WDT 10_1101-2020_01_28_923532 401 7 are be VBP 10_1101-2020_01_28_923532 401 8 lowly lowly RB 10_1101-2020_01_28_923532 401 9 expressed express VBN 10_1101-2020_01_28_923532 401 10 in in IN 10_1101-2020_01_28_923532 401 11 normal normal JJ 10_1101-2020_01_28_923532 401 12 tissues tissue NNS 10_1101-2020_01_28_923532 401 13 To to TO 10_1101-2020_01_28_923532 401 14 analyze analyze VB 10_1101-2020_01_28_923532 401 15 the the DT 10_1101-2020_01_28_923532 401 16 tissue tissue NN 10_1101-2020_01_28_923532 401 17 specificity specificity NN 10_1101-2020_01_28_923532 401 18 of of IN 10_1101-2020_01_28_923532 401 19 the the DT 10_1101-2020_01_28_923532 401 20 1269 1269 CD 10_1101-2020_01_28_923532 401 21 candidate candidate NN 10_1101-2020_01_28_923532 401 22 target target NN 10_1101-2020_01_28_923532 401 23 genes gene NNS 10_1101-2020_01_28_923532 401 24 , , , 10_1101-2020_01_28_923532 401 25 the the DT 10_1101-2020_01_28_923532 401 26 RNAseq RNAseq NNP 10_1101-2020_01_28_923532 401 27 based base VBN 10_1101-2020_01_28_923532 401 28 multiple multiple JJ 10_1101-2020_01_28_923532 401 29 tissue tissue NN 10_1101-2020_01_28_923532 401 30 expression expression NN 10_1101-2020_01_28_923532 401 31 data datum NNS 10_1101-2020_01_28_923532 401 32 was be VBD 10_1101-2020_01_28_923532 401 33 obtained obtain VBN 10_1101-2020_01_28_923532 401 34 from from IN 10_1101-2020_01_28_923532 401 35 the the DT 10_1101-2020_01_28_923532 401 36 Human Human NNP 10_1101-2020_01_28_923532 401 37 Protein Protein NNP 10_1101-2020_01_28_923532 401 38 Atlas Atlas NNP 10_1101-2020_01_28_923532 401 39 ( ( -LRB- 10_1101-2020_01_28_923532 401 40 HPA HPA NNP 10_1101-2020_01_28_923532 401 41 ) ) -RRB- 10_1101-2020_01_28_923532 401 42 database database NN 10_1101-2020_01_28_923532 401 43 ( ( -LRB- 10_1101-2020_01_28_923532 401 44 https://www.proteinatlas.org/about/download https://www.proteinatlas.org/about/download NN 10_1101-2020_01_28_923532 401 45 ; ; : 10_1101-2020_01_28_923532 401 46 Date date NN 10_1101-2020_01_28_923532 401 47 : : : 10_1101-2020_01_28_923532 401 48 May May NNP 10_1101-2020_01_28_923532 401 49 29 29 CD 10_1101-2020_01_28_923532 401 50 , , , 10_1101-2020_01_28_923532 401 51 2020 2020 CD 10_1101-2020_01_28_923532 401 52 ) ) -RRB- 10_1101-2020_01_28_923532 401 53 . . . 10_1101-2020_01_28_923532 402 1 The the DT 10_1101-2020_01_28_923532 402 2 HPA HPA NNP 10_1101-2020_01_28_923532 402 3 database database NN 10_1101-2020_01_28_923532 402 4 includes include VBZ 10_1101-2020_01_28_923532 402 5 expression expression NN 10_1101-2020_01_28_923532 402 6 values value NNS 10_1101-2020_01_28_923532 402 7 ( ( -LRB- 10_1101-2020_01_28_923532 402 8 in in IN 10_1101-2020_01_28_923532 402 9 units unit NNS 10_1101-2020_01_28_923532 402 10 of of IN 10_1101-2020_01_28_923532 402 11 transcripts transcript NNS 10_1101-2020_01_28_923532 402 12 per per IN 10_1101-2020_01_28_923532 402 13 million million CD 10_1101-2020_01_28_923532 402 14 ( ( -LRB- 10_1101-2020_01_28_923532 402 15 TPM TPM NNP 10_1101-2020_01_28_923532 402 16 ) ) -RRB- 10_1101-2020_01_28_923532 402 17 ) ) -RRB- 10_1101-2020_01_28_923532 402 18 for for IN 10_1101-2020_01_28_923532 402 19 37 37 CD 10_1101-2020_01_28_923532 402 20 tissues tissue NNS 10_1101-2020_01_28_923532 402 21 from from IN 10_1101-2020_01_28_923532 402 22 HPA HPA NNP 10_1101-2020_01_28_923532 402 23 ( ( -LRB- 10_1101-2020_01_28_923532 402 24 rna_tissue_hpa.tsv.zip)75 rna_tissue_hpa.tsv.zip)75 NNP 10_1101-2020_01_28_923532 402 25 and and CC 10_1101-2020_01_28_923532 402 26 36 36 CD 10_1101-2020_01_28_923532 402 27 tissues tissue NNS 10_1101-2020_01_28_923532 402 28 from from IN 10_1101-2020_01_28_923532 402 29 the the DT 10_1101-2020_01_28_923532 402 30 Genotype Genotype NNP 10_1101-2020_01_28_923532 402 31 - - HYPH 10_1101-2020_01_28_923532 402 32 Tissue Tissue NNP 10_1101-2020_01_28_923532 402 33 Expression Expression NNP 10_1101-2020_01_28_923532 402 34 consortium consortium NN 10_1101-2020_01_28_923532 402 35 ( ( -LRB- 10_1101-2020_01_28_923532 402 36 rna_tissue_gtex.tsv.zip)76 rna_tissue_gtex.tsv.zip)76 NNP 10_1101-2020_01_28_923532 402 37 . . . 10_1101-2020_01_28_923532 403 1 Next next RB 10_1101-2020_01_28_923532 403 2 , , , 10_1101-2020_01_28_923532 403 3 to to TO 10_1101-2020_01_28_923532 403 4 identify identify VB 10_1101-2020_01_28_923532 403 5 target target NN 10_1101-2020_01_28_923532 403 6 genes gene NNS 10_1101-2020_01_28_923532 403 7 with with IN 10_1101-2020_01_28_923532 403 8 low low JJ 10_1101-2020_01_28_923532 403 9 or or CC 10_1101-2020_01_28_923532 403 10 no no DT 10_1101-2020_01_28_923532 403 11 expression expression NN 10_1101-2020_01_28_923532 403 12 within within IN 10_1101-2020_01_28_923532 403 13 majority majority NN 10_1101-2020_01_28_923532 403 14 of of IN 10_1101-2020_01_28_923532 403 15 adult adult NN 10_1101-2020_01_28_923532 403 16 human human JJ 10_1101-2020_01_28_923532 403 17 tissues tissue NNS 10_1101-2020_01_28_923532 403 18 , , , 10_1101-2020_01_28_923532 403 19 for for IN 10_1101-2020_01_28_923532 403 20 the the DT 10_1101-2020_01_28_923532 403 21 1269 1269 CD 10_1101-2020_01_28_923532 403 22 candidate candidate NN 10_1101-2020_01_28_923532 403 23 genes gene NNS 10_1101-2020_01_28_923532 403 24 we -PRON- PRP 10_1101-2020_01_28_923532 403 25 identified identify VBD 10_1101-2020_01_28_923532 403 26 genes gene NNS 10_1101-2020_01_28_923532 403 27 whose whose WP$ 10_1101-2020_01_28_923532 403 28 average average JJ 10_1101-2020_01_28_923532 403 29 expression expression NN 10_1101-2020_01_28_923532 403 30 across across IN 10_1101-2020_01_28_923532 403 31 tissues tissue NNS 10_1101-2020_01_28_923532 403 32 is be VBZ 10_1101-2020_01_28_923532 403 33 below below IN 10_1101-2020_01_28_923532 403 34 certain certain JJ 10_1101-2020_01_28_923532 403 35 threshold threshold NN 10_1101-2020_01_28_923532 403 36 value value NN 10_1101-2020_01_28_923532 403 37 ( ( -LRB- 10_1101-2020_01_28_923532 403 38 0.25 0.25 CD 10_1101-2020_01_28_923532 403 39 , , , 10_1101-2020_01_28_923532 403 40 0.5 0.5 CD 10_1101-2020_01_28_923532 403 41 , , , 10_1101-2020_01_28_923532 403 42 1 1 CD 10_1101-2020_01_28_923532 403 43 , , , 10_1101-2020_01_28_923532 403 44 2 2 CD 10_1101-2020_01_28_923532 403 45 , , , 10_1101-2020_01_28_923532 403 46 5 5 CD 10_1101-2020_01_28_923532 403 47 , , , 10_1101-2020_01_28_923532 403 48 and and CC 10_1101-2020_01_28_923532 403 49 10 10 CD 10_1101-2020_01_28_923532 403 50 TPM TPM NNP 10_1101-2020_01_28_923532 403 51 ) ) -RRB- 10_1101-2020_01_28_923532 403 52 in in IN 10_1101-2020_01_28_923532 403 53 both both DT 10_1101-2020_01_28_923532 403 54 HPA HPA NNP 10_1101-2020_01_28_923532 403 55 and and CC 10_1101-2020_01_28_923532 403 56 GTEx GTEx NNP 10_1101-2020_01_28_923532 403 57 data datum NNS 10_1101-2020_01_28_923532 403 58 sets set NNS 10_1101-2020_01_28_923532 403 59 . . . 10_1101-2020_01_28_923532 404 1 Using use VBG 10_1101-2020_01_28_923532 404 2 the the DT 10_1101-2020_01_28_923532 404 3 intersection intersection NN 10_1101-2020_01_28_923532 404 4 of of IN 10_1101-2020_01_28_923532 404 5 low low JJ 10_1101-2020_01_28_923532 404 6 expression expression NN 10_1101-2020_01_28_923532 404 7 candidate candidate NN 10_1101-2020_01_28_923532 404 8 genes gene NNS 10_1101-2020_01_28_923532 404 9 from from IN 10_1101-2020_01_28_923532 404 10 HPA HPA NNP 10_1101-2020_01_28_923532 404 11 and and CC 10_1101-2020_01_28_923532 404 12 GTEx GTEx NNP 10_1101-2020_01_28_923532 404 13 data data NN 10_1101-2020_01_28_923532 404 14 sets set NNS 10_1101-2020_01_28_923532 404 15 , , , 10_1101-2020_01_28_923532 404 16 we -PRON- PRP 10_1101-2020_01_28_923532 404 17 generated generate VBD 10_1101-2020_01_28_923532 404 18 lists list NNS 10_1101-2020_01_28_923532 404 19 of of IN 10_1101-2020_01_28_923532 404 20 high high JJ 10_1101-2020_01_28_923532 404 21 confidence confidence NN 10_1101-2020_01_28_923532 404 22 targets target NNS 10_1101-2020_01_28_923532 404 23 . . . 10_1101-2020_01_28_923532 405 1 The the DT 10_1101-2020_01_28_923532 405 2 size size NN 10_1101-2020_01_28_923532 405 3 of of IN 10_1101-2020_01_28_923532 405 4 the the DT 10_1101-2020_01_28_923532 405 5 resulting result VBG 10_1101-2020_01_28_923532 405 6 high high JJ 10_1101-2020_01_28_923532 405 7 confidence confidence NN 10_1101-2020_01_28_923532 405 8 target target NN 10_1101-2020_01_28_923532 405 9 genes gene NNS 10_1101-2020_01_28_923532 405 10 varied vary VBN 10_1101-2020_01_28_923532 405 11 from from IN 10_1101-2020_01_28_923532 405 12 424 424 CD 10_1101-2020_01_28_923532 405 13 ( ( -LRB- 10_1101-2020_01_28_923532 405 14 average average JJ 10_1101-2020_01_28_923532 405 15 expression expression NN 10_1101-2020_01_28_923532 405 16 less less JJR 10_1101-2020_01_28_923532 405 17 than than IN 10_1101-2020_01_28_923532 405 18 0.25 0.25 CD 10_1101-2020_01_28_923532 405 19 TPM TPM NNP 10_1101-2020_01_28_923532 405 20 ) ) -RRB- 10_1101-2020_01_28_923532 405 21 to to IN 10_1101-2020_01_28_923532 405 22 900 900 CD 10_1101-2020_01_28_923532 405 23 ( ( -LRB- 10_1101-2020_01_28_923532 405 24 average average JJ 10_1101-2020_01_28_923532 405 25 expression expression NN 10_1101-2020_01_28_923532 405 26 across across IN 10_1101-2020_01_28_923532 405 27 tissue tissue NN 10_1101-2020_01_28_923532 405 28 less less JJR 10_1101-2020_01_28_923532 405 29 than than IN 10_1101-2020_01_28_923532 405 30 10 10 CD 10_1101-2020_01_28_923532 405 31 TPM TPM NNP 10_1101-2020_01_28_923532 405 32 ) ) -RRB- 10_1101-2020_01_28_923532 405 33 genes gene NNS 10_1101-2020_01_28_923532 405 34 ( ( -LRB- 10_1101-2020_01_28_923532 405 35 Table table NN 10_1101-2020_01_28_923532 405 36 2 2 CD 10_1101-2020_01_28_923532 405 37 ) ) -RRB- 10_1101-2020_01_28_923532 405 38 . . . 10_1101-2020_01_28_923532 406 1 While while IN 10_1101-2020_01_28_923532 406 2 the the DT 10_1101-2020_01_28_923532 406 3 total total JJ 10_1101-2020_01_28_923532 406 4 number number NN 10_1101-2020_01_28_923532 406 5 of of IN 10_1101-2020_01_28_923532 406 6 genes gene NNS 10_1101-2020_01_28_923532 406 7 decreases decrease VBZ 10_1101-2020_01_28_923532 406 8 slowly slowly RB 10_1101-2020_01_28_923532 406 9 , , , 10_1101-2020_01_28_923532 406 10 the the DT 10_1101-2020_01_28_923532 406 11 decrease decrease NN 10_1101-2020_01_28_923532 406 12 is be VBZ 10_1101-2020_01_28_923532 406 13 much much RB 10_1101-2020_01_28_923532 406 14 steeper steep JJR 10_1101-2020_01_28_923532 406 15 if if IN 10_1101-2020_01_28_923532 406 16 one one CD 10_1101-2020_01_28_923532 406 17 excludes exclude VBZ 10_1101-2020_01_28_923532 406 18 olfactory olfactory JJ 10_1101-2020_01_28_923532 406 19 receptors receptor NNS 10_1101-2020_01_28_923532 406 20 and and CC 10_1101-2020_01_28_923532 406 21 taste taste NN 10_1101-2020_01_28_923532 406 22 receptors receptor NNS 10_1101-2020_01_28_923532 406 23 ( ( -LRB- 10_1101-2020_01_28_923532 406 24 Table table NN 10_1101-2020_01_28_923532 406 25 2 2 CD 10_1101-2020_01_28_923532 406 26 ) ) -RRB- 10_1101-2020_01_28_923532 406 27 . . . 10_1101-2020_01_28_923532 407 1 These these DT 10_1101-2020_01_28_923532 407 2 sensory sensory JJ 10_1101-2020_01_28_923532 407 3 receptors receptor NNS 10_1101-2020_01_28_923532 407 4 are be VBP 10_1101-2020_01_28_923532 407 5 not not RB 10_1101-2020_01_28_923532 407 6 typically typically RB 10_1101-2020_01_28_923532 407 7 considered consider VBN 10_1101-2020_01_28_923532 407 8 as as IN 10_1101-2020_01_28_923532 407 9 cancer cancer NN 10_1101-2020_01_28_923532 407 10 targets target NNS 10_1101-2020_01_28_923532 407 11 , , , 10_1101-2020_01_28_923532 407 12 although although IN 10_1101-2020_01_28_923532 407 13 a a DT 10_1101-2020_01_28_923532 407 14 few few JJ 10_1101-2020_01_28_923532 407 15 of of IN 10_1101-2020_01_28_923532 407 16 these these DT 10_1101-2020_01_28_923532 407 17 receptors receptor NNS 10_1101-2020_01_28_923532 407 18 are be VBP 10_1101-2020_01_28_923532 407 19 selected select VBN 10_1101-2020_01_28_923532 407 20 in in IN 10_1101-2020_01_28_923532 407 21 optimal optimal JJ 10_1101-2020_01_28_923532 407 22 target target NN 10_1101-2020_01_28_923532 407 23 sets set NNS 10_1101-2020_01_28_923532 407 24 when when WRB 10_1101-2020_01_28_923532 407 25 there there EX 10_1101-2020_01_28_923532 407 26 are be VBP 10_1101-2020_01_28_923532 407 27 few few JJ 10_1101-2020_01_28_923532 407 28 alternatives alternative NNS 10_1101-2020_01_28_923532 407 29 ( ( -LRB- 10_1101-2020_01_28_923532 407 30 Figure Figure NNP 10_1101-2020_01_28_923532 407 31 7 7 CD 10_1101-2020_01_28_923532 407 32 ) ) -RRB- 10_1101-2020_01_28_923532 407 33 . . . 10_1101-2020_01_28_923532 408 1 MadHitter MadHitter NNP 10_1101-2020_01_28_923532 408 2 was be VBD 10_1101-2020_01_28_923532 408 3 run run VBN 10_1101-2020_01_28_923532 408 4 on on IN 10_1101-2020_01_28_923532 408 5 all all DT 10_1101-2020_01_28_923532 408 6 nine nine CD 10_1101-2020_01_28_923532 408 7 data data NN 10_1101-2020_01_28_923532 408 8 sets set NNS 10_1101-2020_01_28_923532 408 9 using use VBG 10_1101-2020_01_28_923532 408 10 the the DT 10_1101-2020_01_28_923532 408 11 expression expression NN 10_1101-2020_01_28_923532 408 12 information information NN 10_1101-2020_01_28_923532 408 13 from from IN 10_1101-2020_01_28_923532 408 14 the the DT 10_1101-2020_01_28_923532 408 15 high high JJ 10_1101-2020_01_28_923532 408 16 confidence confidence NN 10_1101-2020_01_28_923532 408 17 gene gene NN 10_1101-2020_01_28_923532 408 18 lists list NNS 10_1101-2020_01_28_923532 408 19 . . . 10_1101-2020_01_28_923532 409 1 Table table NN 10_1101-2020_01_28_923532 409 2 2 2 CD 10_1101-2020_01_28_923532 409 3 : : : 10_1101-2020_01_28_923532 409 4 Size size NN 10_1101-2020_01_28_923532 409 5 of of IN 10_1101-2020_01_28_923532 409 6 high high JJ 10_1101-2020_01_28_923532 409 7 confidence confidence NN 10_1101-2020_01_28_923532 409 8 target target NN 10_1101-2020_01_28_923532 409 9 gene gene NN 10_1101-2020_01_28_923532 409 10 sets set NNS 10_1101-2020_01_28_923532 409 11 for for IN 10_1101-2020_01_28_923532 409 12 different different JJ 10_1101-2020_01_28_923532 409 13 thresholds threshold NNS 10_1101-2020_01_28_923532 409 14 . . . 10_1101-2020_01_28_923532 410 1 Thresholds threshold NNS 10_1101-2020_01_28_923532 410 2 expression expression NN 10_1101-2020_01_28_923532 410 3 across across IN 10_1101-2020_01_28_923532 410 4 Size size NN 10_1101-2020_01_28_923532 410 5 of of IN 10_1101-2020_01_28_923532 410 6 gene gene NN 10_1101-2020_01_28_923532 410 7 set set VBN 10_1101-2020_01_28_923532 410 8 No no NN 10_1101-2020_01_28_923532 410 9 of of IN 10_1101-2020_01_28_923532 410 10 genes gene NNS 10_1101-2020_01_28_923532 410 11 which which WDT 10_1101-2020_01_28_923532 410 12 are be VBP 10_1101-2020_01_28_923532 410 13 NOT not RB 10_1101-2020_01_28_923532 410 14 olfactory olfactory JJ 10_1101-2020_01_28_923532 410 15 No no NN 10_1101-2020_01_28_923532 410 16 of of IN 10_1101-2020_01_28_923532 410 17 genes gene NNS 10_1101-2020_01_28_923532 410 18 with with IN 10_1101-2020_01_28_923532 410 19 ligand ligand NNP 10_1101-2020_01_28_923532 410 20 mimicking mimic VBG 10_1101-2020_01_28_923532 410 21 105 105 CD 10_1101-2020_01_28_923532 410 22 and and CC 10_1101-2020_01_28_923532 410 23 is be VBZ 10_1101-2020_01_28_923532 410 24 also also RB 10_1101-2020_01_28_923532 410 25 made make VBN 10_1101-2020_01_28_923532 410 26 available available JJ 10_1101-2020_01_28_923532 410 27 for for IN 10_1101-2020_01_28_923532 410 28 use use NN 10_1101-2020_01_28_923532 410 29 under under IN 10_1101-2020_01_28_923532 410 30 a a DT 10_1101-2020_01_28_923532 410 31 CC0 CC0 NNP 10_1101-2020_01_28_923532 410 32 license license NN 10_1101-2020_01_28_923532 410 33 . . . 10_1101-2020_01_28_923532 411 1 ( ( -LRB- 10_1101-2020_01_28_923532 411 2 which which WDT 10_1101-2020_01_28_923532 411 3 was be VBD 10_1101-2020_01_28_923532 411 4 not not RB 10_1101-2020_01_28_923532 411 5 certified certify VBN 10_1101-2020_01_28_923532 411 6 by by IN 10_1101-2020_01_28_923532 411 7 peer peer NN 10_1101-2020_01_28_923532 411 8 review review NN 10_1101-2020_01_28_923532 411 9 ) ) -RRB- 10_1101-2020_01_28_923532 411 10 is be VBZ 10_1101-2020_01_28_923532 411 11 the the DT 10_1101-2020_01_28_923532 411 12 author author NN 10_1101-2020_01_28_923532 411 13 / / SYM 10_1101-2020_01_28_923532 411 14 funder funder NN 10_1101-2020_01_28_923532 411 15 . . . 10_1101-2020_01_28_923532 412 1 This this DT 10_1101-2020_01_28_923532 412 2 article article NN 10_1101-2020_01_28_923532 412 3 is be VBZ 10_1101-2020_01_28_923532 412 4 a a DT 10_1101-2020_01_28_923532 412 5 US US NNP 10_1101-2020_01_28_923532 412 6 Government Government NNP 10_1101-2020_01_28_923532 412 7 work work NN 10_1101-2020_01_28_923532 412 8 . . . 10_1101-2020_01_28_923532 413 1 It -PRON- PRP 10_1101-2020_01_28_923532 413 2 is be VBZ 10_1101-2020_01_28_923532 413 3 not not RB 10_1101-2020_01_28_923532 413 4 subject subject JJ 10_1101-2020_01_28_923532 413 5 to to IN 10_1101-2020_01_28_923532 413 6 copyright copyright NN 10_1101-2020_01_28_923532 413 7 under under IN 10_1101-2020_01_28_923532 413 8 17 17 CD 10_1101-2020_01_28_923532 413 9 USC usc NN 10_1101-2020_01_28_923532 413 10 The the DT 10_1101-2020_01_28_923532 413 11 copyright copyright NN 10_1101-2020_01_28_923532 413 12 holder holder NN 10_1101-2020_01_28_923532 413 13 for for IN 10_1101-2020_01_28_923532 413 14 this this DT 10_1101-2020_01_28_923532 413 15 preprintthis preprintthis NN 10_1101-2020_01_28_923532 413 16 version version NN 10_1101-2020_01_28_923532 413 17 posted post VBD 10_1101-2020_01_28_923532 413 18 February February NNP 10_1101-2020_01_28_923532 413 19 12 12 CD 10_1101-2020_01_28_923532 413 20 , , , 10_1101-2020_01_28_923532 413 21 2021 2021 CD 10_1101-2020_01_28_923532 413 22 . . . 10_1101-2020_01_28_923532 413 23 ; ; : 10_1101-2020_01_28_923532 413 24 https://doi.org/10.1101/2020.01.28.923532doi https://doi.org/10.1101/2020.01.28.923532doi ADD 10_1101-2020_01_28_923532 413 25 : : : 10_1101-2020_01_28_923532 413 26 bioRxiv biorxiv VB 10_1101-2020_01_28_923532 413 27 preprint preprint NN 10_1101-2020_01_28_923532 413 28 https://www.proteinatlas.org/about/download https://www.proteinatlas.org/about/download NN 10_1101-2020_01_28_923532 413 29 https://doi.org/10.1101/2020.01.28.923532 https://doi.org/10.1101/2020.01.28.923532 PRP 10_1101-2020_01_28_923532 413 30 32 32 CD 10_1101-2020_01_28_923532 413 31 tissues tissue NNS 10_1101-2020_01_28_923532 413 32 ( ( -LRB- 10_1101-2020_01_28_923532 413 33 TPM TPM NNP 10_1101-2020_01_28_923532 413 34 ) ) -RRB- 10_1101-2020_01_28_923532 413 35 ( ( -LRB- 10_1101-2020_01_28_923532 413 36 OR or CC 10_1101-2020_01_28_923532 413 37 * * NFP 10_1101-2020_01_28_923532 413 38 ) ) -RRB- 10_1101-2020_01_28_923532 413 39 and and CC 10_1101-2020_01_28_923532 413 40 taste taste NN 10_1101-2020_01_28_923532 413 41 receptors receptor NNS 10_1101-2020_01_28_923532 413 42 ( ( -LRB- 10_1101-2020_01_28_923532 413 43 TAS TAS NNP 10_1101-2020_01_28_923532 413 44 * * NFP 10_1101-2020_01_28_923532 413 45 ) ) -RRB- 10_1101-2020_01_28_923532 413 46 peptides peptide NNS 10_1101-2020_01_28_923532 413 47 ( ( -LRB- 10_1101-2020_01_28_923532 413 48 intersection intersection NN 10_1101-2020_01_28_923532 413 49 with with IN 10_1101-2020_01_28_923532 413 50 Tables Tables NNP 10_1101-2020_01_28_923532 413 51 3 3 CD 10_1101-2020_01_28_923532 413 52 and and CC 10_1101-2020_01_28_923532 413 53 4 4 CD 10_1101-2020_01_28_923532 413 54 ) ) -RRB- 10_1101-2020_01_28_923532 413 55 0.25 0.25 CD 10_1101-2020_01_28_923532 413 56 424 424 CD 10_1101-2020_01_28_923532 413 57 97 97 CD 10_1101-2020_01_28_923532 413 58 1 1 CD 10_1101-2020_01_28_923532 413 59 0.5 0.5 CD 10_1101-2020_01_28_923532 413 60 494 494 CD 10_1101-2020_01_28_923532 413 61 141 141 CD 10_1101-2020_01_28_923532 413 62 3 3 CD 10_1101-2020_01_28_923532 413 63 1 1 CD 10_1101-2020_01_28_923532 413 64 547 547 CD 10_1101-2020_01_28_923532 413 65 187 187 CD 10_1101-2020_01_28_923532 413 66 3 3 CD 10_1101-2020_01_28_923532 413 67 2 2 CD 10_1101-2020_01_28_923532 413 68 632 632 CD 10_1101-2020_01_28_923532 413 69 269 269 CD 10_1101-2020_01_28_923532 413 70 6 6 CD 10_1101-2020_01_28_923532 413 71 5 5 CD 10_1101-2020_01_28_923532 413 72 762 762 CD 10_1101-2020_01_28_923532 413 73 398 398 CD 10_1101-2020_01_28_923532 413 74 10 10 CD 10_1101-2020_01_28_923532 413 75 10 10 CD 10_1101-2020_01_28_923532 413 76 900 900 CD 10_1101-2020_01_28_923532 413 77 536 536 CD 10_1101-2020_01_28_923532 413 78 19 19 CD 10_1101-2020_01_28_923532 413 79 Assembling assemble VBG 10_1101-2020_01_28_923532 413 80 Lists Lists NNPS 10_1101-2020_01_28_923532 413 81 of of IN 10_1101-2020_01_28_923532 413 82 Membrane Membrane NNP 10_1101-2020_01_28_923532 413 83 Target Target NNP 10_1101-2020_01_28_923532 413 84 Genes Genes NNPS 10_1101-2020_01_28_923532 413 85 We -PRON- PRP 10_1101-2020_01_28_923532 413 86 are be VBP 10_1101-2020_01_28_923532 413 87 interested interested JJ 10_1101-2020_01_28_923532 413 88 in in IN 10_1101-2020_01_28_923532 413 89 the the DT 10_1101-2020_01_28_923532 413 90 set set NN 10_1101-2020_01_28_923532 413 91 of of IN 10_1101-2020_01_28_923532 413 92 genes gene NNS 10_1101-2020_01_28_923532 413 93 𝐺 𝐺 NN 10_1101-2020_01_28_923532 413 94 that that WDT 10_1101-2020_01_28_923532 413 95 i i PRP 10_1101-2020_01_28_923532 413 96 ) ) -RRB- 10_1101-2020_01_28_923532 413 97 have have VBP 10_1101-2020_01_28_923532 413 98 the the DT 10_1101-2020_01_28_923532 413 99 encoded encoded JJ 10_1101-2020_01_28_923532 413 100 protein protein NN 10_1101-2020_01_28_923532 413 101 expressed express VBD 10_1101-2020_01_28_923532 413 102 on on IN 10_1101-2020_01_28_923532 413 103 the the DT 10_1101-2020_01_28_923532 413 104 cell cell NN 10_1101-2020_01_28_923532 413 105 surface surface NN 10_1101-2020_01_28_923532 413 106 and and CC 10_1101-2020_01_28_923532 413 107 ii ii NN 10_1101-2020_01_28_923532 413 108 ) ) -RRB- 10_1101-2020_01_28_923532 413 109 for for IN 10_1101-2020_01_28_923532 413 110 which which WDT 10_1101-2020_01_28_923532 413 111 some some DT 10_1101-2020_01_28_923532 413 112 biochemistry biochemistry NN 10_1101-2020_01_28_923532 413 113 lab lab NN 10_1101-2020_01_28_923532 413 114 has have VBZ 10_1101-2020_01_28_923532 413 115 found find VBN 10_1101-2020_01_28_923532 413 116 a a DT 10_1101-2020_01_28_923532 413 117 small small JJ 10_1101-2020_01_28_923532 413 118 peptide peptide NN 10_1101-2020_01_28_923532 413 119 ( ( -LRB- 10_1101-2020_01_28_923532 413 120 i.e. i.e. FW 10_1101-2020_01_28_923532 414 1 amino amino NNP 10_1101-2020_01_28_923532 414 2 acid acid NNP 10_1101-2020_01_28_923532 414 3 sequences sequence NNS 10_1101-2020_01_28_923532 414 4 of of IN 10_1101-2020_01_28_923532 414 5 5 5 CD 10_1101-2020_01_28_923532 414 6 - - SYM 10_1101-2020_01_28_923532 414 7 30 30 CD 10_1101-2020_01_28_923532 414 8 amino amino JJ 10_1101-2020_01_28_923532 414 9 acids acid NNS 10_1101-2020_01_28_923532 414 10 ) ) -RRB- 10_1101-2020_01_28_923532 414 11 that that WDT 10_1101-2020_01_28_923532 414 12 can can MD 10_1101-2020_01_28_923532 414 13 attach attach VB 10_1101-2020_01_28_923532 414 14 itself -PRON- PRP 10_1101-2020_01_28_923532 414 15 to to IN 10_1101-2020_01_28_923532 414 16 the the DT 10_1101-2020_01_28_923532 414 17 target target NN 10_1101-2020_01_28_923532 414 18 protein protein NN 10_1101-2020_01_28_923532 414 19 and and CC 10_1101-2020_01_28_923532 414 20 get get VB 10_1101-2020_01_28_923532 414 21 inside inside IN 10_1101-2020_01_28_923532 414 22 the the DT 10_1101-2020_01_28_923532 414 23 cell cell NN 10_1101-2020_01_28_923532 414 24 carrying carry VBG 10_1101-2020_01_28_923532 414 25 a a DT 10_1101-2020_01_28_923532 414 26 tiny tiny JJ 10_1101-2020_01_28_923532 414 27 cargo cargo NN 10_1101-2020_01_28_923532 414 28 of of IN 10_1101-2020_01_28_923532 414 29 a a DT 10_1101-2020_01_28_923532 414 30 toxic toxic JJ 10_1101-2020_01_28_923532 414 31 drug drug NN 10_1101-2020_01_28_923532 414 32 that that WDT 10_1101-2020_01_28_923532 414 33 will will MD 10_1101-2020_01_28_923532 414 34 kill kill VB 10_1101-2020_01_28_923532 414 35 the the DT 10_1101-2020_01_28_923532 414 36 cell cell NN 10_1101-2020_01_28_923532 414 37 and and CC 10_1101-2020_01_28_923532 414 38 iii iii NNP 10_1101-2020_01_28_923532 414 39 ) ) -RRB- 10_1101-2020_01_28_923532 414 40 encode encode VBP 10_1101-2020_01_28_923532 414 41 proteins protein NNS 10_1101-2020_01_28_923532 414 42 that that WDT 10_1101-2020_01_28_923532 414 43 are be VBP 10_1101-2020_01_28_923532 414 44 receptors receptor NNS 10_1101-2020_01_28_923532 414 45 . . . 10_1101-2020_01_28_923532 415 1 The the DT 10_1101-2020_01_28_923532 415 2 third third JJ 10_1101-2020_01_28_923532 415 3 condition condition NN 10_1101-2020_01_28_923532 415 4 is be VBZ 10_1101-2020_01_28_923532 415 5 needed need VBN 10_1101-2020_01_28_923532 415 6 because because IN 10_1101-2020_01_28_923532 415 7 many many JJ 10_1101-2020_01_28_923532 415 8 proteins protein NNS 10_1101-2020_01_28_923532 415 9 that that WDT 10_1101-2020_01_28_923532 415 10 reside reside VBP 10_1101-2020_01_28_923532 415 11 on on IN 10_1101-2020_01_28_923532 415 12 the the DT 10_1101-2020_01_28_923532 415 13 cell cell NN 10_1101-2020_01_28_923532 415 14 surface surface NN 10_1101-2020_01_28_923532 415 15 are be VBP 10_1101-2020_01_28_923532 415 16 not not RB 10_1101-2020_01_28_923532 415 17 receptors receptor NNS 10_1101-2020_01_28_923532 415 18 that that WDT 10_1101-2020_01_28_923532 415 19 can can MD 10_1101-2020_01_28_923532 415 20 undergo undergo VB 10_1101-2020_01_28_923532 415 21 RME rme NN 10_1101-2020_01_28_923532 415 22 . . . 10_1101-2020_01_28_923532 416 1 The the DT 10_1101-2020_01_28_923532 416 2 first first JJ 10_1101-2020_01_28_923532 416 3 condition condition NN 10_1101-2020_01_28_923532 416 4 can can MD 10_1101-2020_01_28_923532 416 5 be be VB 10_1101-2020_01_28_923532 416 6 reliably reliably RB 10_1101-2020_01_28_923532 416 7 tested test VBN 10_1101-2020_01_28_923532 416 8 using use VBG 10_1101-2020_01_28_923532 416 9 a a DT 10_1101-2020_01_28_923532 416 10 recently recently RB 10_1101-2020_01_28_923532 416 11 published publish VBN 10_1101-2020_01_28_923532 416 12 list list NN 10_1101-2020_01_28_923532 416 13 of of IN 10_1101-2020_01_28_923532 416 14 2799 2799 CD 10_1101-2020_01_28_923532 416 15 genes gene NNS 10_1101-2020_01_28_923532 416 16 encoding encode VBG 10_1101-2020_01_28_923532 416 17 human human JJ 10_1101-2020_01_28_923532 416 18 predicted predict VBD 10_1101-2020_01_28_923532 416 19 cell cell NN 10_1101-2020_01_28_923532 416 20 surface surface NN 10_1101-2020_01_28_923532 416 21 proteins77 proteins77 NNP 10_1101-2020_01_28_923532 416 22 ; ; : 10_1101-2020_01_28_923532 416 23 we -PRON- PRP 10_1101-2020_01_28_923532 416 24 reduced reduce VBD 10_1101-2020_01_28_923532 416 25 the the DT 10_1101-2020_01_28_923532 416 26 list list NN 10_1101-2020_01_28_923532 416 27 to to IN 10_1101-2020_01_28_923532 416 28 1269 1269 CD 10_1101-2020_01_28_923532 416 29 by by IN 10_1101-2020_01_28_923532 416 30 requiring require VBG 10_1101-2020_01_28_923532 416 31 that that IN 10_1101-2020_01_28_923532 416 32 the the DT 10_1101-2020_01_28_923532 416 33 proteins protein NNS 10_1101-2020_01_28_923532 416 34 be be VB 10_1101-2020_01_28_923532 416 35 receptors receptor NNS 10_1101-2020_01_28_923532 416 36 , , , 10_1101-2020_01_28_923532 416 37 which which WDT 10_1101-2020_01_28_923532 416 38 is be VBZ 10_1101-2020_01_28_923532 416 39 necessary necessary JJ 10_1101-2020_01_28_923532 416 40 for for IN 10_1101-2020_01_28_923532 416 41 RME rme NN 10_1101-2020_01_28_923532 416 42 - - HYPH 10_1101-2020_01_28_923532 416 43 based base VBN 10_1101-2020_01_28_923532 416 44 therapies therapy NNS 10_1101-2020_01_28_923532 416 45 but but CC 10_1101-2020_01_28_923532 416 46 not not RB 10_1101-2020_01_28_923532 416 47 for for IN 10_1101-2020_01_28_923532 416 48 CAR CAR NNP 10_1101-2020_01_28_923532 416 49 - - HYPH 10_1101-2020_01_28_923532 416 50 T T NNP 10_1101-2020_01_28_923532 416 51 therpy24 therpy24 NNS 10_1101-2020_01_28_923532 416 52 . . . 10_1101-2020_01_28_923532 417 1 For for IN 10_1101-2020_01_28_923532 417 2 condition condition NN 10_1101-2020_01_28_923532 417 3 ii ii NNP 10_1101-2020_01_28_923532 417 4 ) ) -RRB- 10_1101-2020_01_28_923532 417 5 , , , 10_1101-2020_01_28_923532 417 6 we -PRON- PRP 10_1101-2020_01_28_923532 417 7 found find VBD 10_1101-2020_01_28_923532 417 8 two two CD 10_1101-2020_01_28_923532 417 9 review review NN 10_1101-2020_01_28_923532 417 10 articles article NNS 10_1101-2020_01_28_923532 417 11 in in IN 10_1101-2020_01_28_923532 417 12 the the DT 10_1101-2020_01_28_923532 417 13 chemistry chemistry NN 10_1101-2020_01_28_923532 417 14 literature19 literature19 NNP 10_1101-2020_01_28_923532 417 15 - - : 10_1101-2020_01_28_923532 417 16 20 20 CD 10_1101-2020_01_28_923532 417 17 that that DT 10_1101-2020_01_28_923532 417 18 list list NN 10_1101-2020_01_28_923532 417 19 targets target NNS 10_1101-2020_01_28_923532 417 20 effectively effectively RB 10_1101-2020_01_28_923532 417 21 meeting meet VBG 10_1101-2020_01_28_923532 417 22 this this DT 10_1101-2020_01_28_923532 417 23 condition condition NN 10_1101-2020_01_28_923532 417 24 . . . 10_1101-2020_01_28_923532 418 1 Intersecting intersect VBG 10_1101-2020_01_28_923532 418 2 the the DT 10_1101-2020_01_28_923532 418 3 lists list NNS 10_1101-2020_01_28_923532 418 4 meeting meet VBG 10_1101-2020_01_28_923532 418 5 conditions condition NNS 10_1101-2020_01_28_923532 418 6 i i PRP 10_1101-2020_01_28_923532 418 7 ) ) -RRB- 10_1101-2020_01_28_923532 418 8 and and CC 10_1101-2020_01_28_923532 418 9 ii ii NNP 10_1101-2020_01_28_923532 418 10 ) ) -RRB- 10_1101-2020_01_28_923532 418 11 gave give VBD 10_1101-2020_01_28_923532 418 12 us -PRON- PRP 10_1101-2020_01_28_923532 418 13 38 38 CD 10_1101-2020_01_28_923532 418 14 genes gene NNS 10_1101-2020_01_28_923532 418 15 / / SYM 10_1101-2020_01_28_923532 418 16 proteins protein NNS 10_1101-2020_01_28_923532 418 17 that that WDT 10_1101-2020_01_28_923532 418 18 could could MD 10_1101-2020_01_28_923532 418 19 be be VB 10_1101-2020_01_28_923532 418 20 targeted target VBN 10_1101-2020_01_28_923532 418 21 ( ( -LRB- 10_1101-2020_01_28_923532 418 22 Table table NN 10_1101-2020_01_28_923532 418 23 3 3 CD 10_1101-2020_01_28_923532 418 24 ) ) -RRB- 10_1101-2020_01_28_923532 418 25 . . . 10_1101-2020_01_28_923532 419 1 Most Most JJS 10_1101-2020_01_28_923532 419 2 of of IN 10_1101-2020_01_28_923532 419 3 the the DT 10_1101-2020_01_28_923532 419 4 data data NN 10_1101-2020_01_28_923532 419 5 sets set NNS 10_1101-2020_01_28_923532 419 6 listed list VBN 10_1101-2020_01_28_923532 419 7 in in IN 10_1101-2020_01_28_923532 419 8 Table table NN 10_1101-2020_01_28_923532 419 9 1 1 CD 10_1101-2020_01_28_923532 419 10 had have VBD 10_1101-2020_01_28_923532 419 11 expression expression NN 10_1101-2020_01_28_923532 419 12 data datum NNS 10_1101-2020_01_28_923532 419 13 on on IN 10_1101-2020_01_28_923532 419 14 1200 1200 CD 10_1101-2020_01_28_923532 419 15 - - SYM 10_1101-2020_01_28_923532 419 16 1220 1220 CD 10_1101-2020_01_28_923532 419 17 of of IN 10_1101-2020_01_28_923532 419 18 these these DT 10_1101-2020_01_28_923532 419 19 genes gene NNS 10_1101-2020_01_28_923532 419 20 because because IN 10_1101-2020_01_28_923532 419 21 the the DT 10_1101-2020_01_28_923532 419 22 list list NN 10_1101-2020_01_28_923532 419 23 of of IN 10_1101-2020_01_28_923532 419 24 1269 1269 CD 10_1101-2020_01_28_923532 419 25 includes include VBZ 10_1101-2020_01_28_923532 419 26 many many JJ 10_1101-2020_01_28_923532 419 27 olfactory olfactory JJ 10_1101-2020_01_28_923532 419 28 receptor receptor NN 10_1101-2020_01_28_923532 419 29 genes gene NNS 10_1101-2020_01_28_923532 419 30 that that WDT 10_1101-2020_01_28_923532 419 31 may may MD 10_1101-2020_01_28_923532 419 32 be be VB 10_1101-2020_01_28_923532 419 33 omitted omit VBN 10_1101-2020_01_28_923532 419 34 from from IN 10_1101-2020_01_28_923532 419 35 standard standard JJ 10_1101-2020_01_28_923532 419 36 genome genome NN 10_1101-2020_01_28_923532 419 37 - - HYPH 10_1101-2020_01_28_923532 419 38 wide wide JJ 10_1101-2020_01_28_923532 419 39 expression expression NN 10_1101-2020_01_28_923532 419 40 experiments experiment NNS 10_1101-2020_01_28_923532 419 41 . . . 10_1101-2020_01_28_923532 420 1 Among among IN 10_1101-2020_01_28_923532 420 2 the the DT 10_1101-2020_01_28_923532 420 3 38 38 CD 10_1101-2020_01_28_923532 420 4 genes gene NNS 10_1101-2020_01_28_923532 420 5 in in IN 10_1101-2020_01_28_923532 420 6 Table table NN 10_1101-2020_01_28_923532 420 7 3 3 CD 10_1101-2020_01_28_923532 420 8 , , , 10_1101-2020_01_28_923532 420 9 13/14 13/14 CD 10_1101-2020_01_28_923532 420 10 data data NN 10_1101-2020_01_28_923532 420 11 sets set NNS 10_1101-2020_01_28_923532 420 12 have have VBP 10_1101-2020_01_28_923532 420 13 all all DT 10_1101-2020_01_28_923532 420 14 38 38 CD 10_1101-2020_01_28_923532 420 15 genes gene NNS 10_1101-2020_01_28_923532 420 16 , , , 10_1101-2020_01_28_923532 420 17 but but CC 10_1101-2020_01_28_923532 420 18 GSE57872 GSE57872 NNP 10_1101-2020_01_28_923532 420 19 was be VBD 10_1101-2020_01_28_923532 420 20 substantially substantially RB 10_1101-2020_01_28_923532 420 21 filtered filter VBN 10_1101-2020_01_28_923532 420 22 and and CC 10_1101-2020_01_28_923532 420 23 has have VBZ 10_1101-2020_01_28_923532 420 24 only only RB 10_1101-2020_01_28_923532 420 25 10/38 10/38 CD 10_1101-2020_01_28_923532 420 26 genes gene NNS 10_1101-2020_01_28_923532 420 27 ; ; : 10_1101-2020_01_28_923532 420 28 since since IN 10_1101-2020_01_28_923532 420 29 GSE57872 GSE57872 NNP 10_1101-2020_01_28_923532 420 30 lacks lack VBZ 10_1101-2020_01_28_923532 420 31 non non JJ 10_1101-2020_01_28_923532 420 32 - - JJ 10_1101-2020_01_28_923532 420 33 tumor tumor JJ 10_1101-2020_01_28_923532 420 34 cells cell NNS 10_1101-2020_01_28_923532 420 35 , , , 10_1101-2020_01_28_923532 420 36 we -PRON- PRP 10_1101-2020_01_28_923532 420 37 did do VBD 10_1101-2020_01_28_923532 420 38 not not RB 10_1101-2020_01_28_923532 420 39 use use VB 10_1101-2020_01_28_923532 420 40 this this DT 10_1101-2020_01_28_923532 420 41 data data NN 10_1101-2020_01_28_923532 420 42 set set VBN 10_1101-2020_01_28_923532 420 43 in in IN 10_1101-2020_01_28_923532 420 44 any any DT 10_1101-2020_01_28_923532 420 45 analyses analysis NNS 10_1101-2020_01_28_923532 420 46 shown show VBN 10_1101-2020_01_28_923532 420 47 . . . 10_1101-2020_01_28_923532 421 1 105 105 CD 10_1101-2020_01_28_923532 421 2 and and CC 10_1101-2020_01_28_923532 421 3 is be VBZ 10_1101-2020_01_28_923532 421 4 also also RB 10_1101-2020_01_28_923532 421 5 made make VBN 10_1101-2020_01_28_923532 421 6 available available JJ 10_1101-2020_01_28_923532 421 7 for for IN 10_1101-2020_01_28_923532 421 8 use use NN 10_1101-2020_01_28_923532 421 9 under under IN 10_1101-2020_01_28_923532 421 10 a a DT 10_1101-2020_01_28_923532 421 11 CC0 CC0 NNP 10_1101-2020_01_28_923532 421 12 license license NN 10_1101-2020_01_28_923532 421 13 . . . 10_1101-2020_01_28_923532 422 1 ( ( -LRB- 10_1101-2020_01_28_923532 422 2 which which WDT 10_1101-2020_01_28_923532 422 3 was be VBD 10_1101-2020_01_28_923532 422 4 not not RB 10_1101-2020_01_28_923532 422 5 certified certify VBN 10_1101-2020_01_28_923532 422 6 by by IN 10_1101-2020_01_28_923532 422 7 peer peer NN 10_1101-2020_01_28_923532 422 8 review review NN 10_1101-2020_01_28_923532 422 9 ) ) -RRB- 10_1101-2020_01_28_923532 422 10 is be VBZ 10_1101-2020_01_28_923532 422 11 the the DT 10_1101-2020_01_28_923532 422 12 author author NN 10_1101-2020_01_28_923532 422 13 / / SYM 10_1101-2020_01_28_923532 422 14 funder funder NN 10_1101-2020_01_28_923532 422 15 . . . 10_1101-2020_01_28_923532 423 1 This this DT 10_1101-2020_01_28_923532 423 2 article article NN 10_1101-2020_01_28_923532 423 3 is be VBZ 10_1101-2020_01_28_923532 423 4 a a DT 10_1101-2020_01_28_923532 423 5 US US NNP 10_1101-2020_01_28_923532 423 6 Government Government NNP 10_1101-2020_01_28_923532 423 7 work work NN 10_1101-2020_01_28_923532 423 8 . . . 10_1101-2020_01_28_923532 424 1 It -PRON- PRP 10_1101-2020_01_28_923532 424 2 is be VBZ 10_1101-2020_01_28_923532 424 3 not not RB 10_1101-2020_01_28_923532 424 4 subject subject JJ 10_1101-2020_01_28_923532 424 5 to to IN 10_1101-2020_01_28_923532 424 6 copyright copyright NN 10_1101-2020_01_28_923532 424 7 under under IN 10_1101-2020_01_28_923532 424 8 17 17 CD 10_1101-2020_01_28_923532 424 9 USC usc NN 10_1101-2020_01_28_923532 424 10 The the DT 10_1101-2020_01_28_923532 424 11 copyright copyright NN 10_1101-2020_01_28_923532 424 12 holder holder NN 10_1101-2020_01_28_923532 424 13 for for IN 10_1101-2020_01_28_923532 424 14 this this DT 10_1101-2020_01_28_923532 424 15 preprintthis preprintthis NN 10_1101-2020_01_28_923532 424 16 version version NN 10_1101-2020_01_28_923532 424 17 posted post VBD 10_1101-2020_01_28_923532 424 18 February February NNP 10_1101-2020_01_28_923532 424 19 12 12 CD 10_1101-2020_01_28_923532 424 20 , , , 10_1101-2020_01_28_923532 424 21 2021 2021 CD 10_1101-2020_01_28_923532 424 22 . . . 10_1101-2020_01_28_923532 424 23 ; ; : 10_1101-2020_01_28_923532 424 24 https://doi.org/10.1101/2020.01.28.923532doi https://doi.org/10.1101/2020.01.28.923532doi ADD 10_1101-2020_01_28_923532 424 25 : : : 10_1101-2020_01_28_923532 424 26 bioRxiv biorxiv VB 10_1101-2020_01_28_923532 424 27 preprint preprint NN 10_1101-2020_01_28_923532 424 28 https://doi.org/10.1101/2020.01.28.923532 https://doi.org/10.1101/2020.01.28.923532 UH 10_1101-2020_01_28_923532 424 29 33 33 CD 10_1101-2020_01_28_923532 424 30 Because because IN 10_1101-2020_01_28_923532 424 31 the the DT 10_1101-2020_01_28_923532 424 32 latter latter JJ 10_1101-2020_01_28_923532 424 33 review20 review20 NNP 10_1101-2020_01_28_923532 424 34 was be VBD 10_1101-2020_01_28_923532 424 35 published publish VBN 10_1101-2020_01_28_923532 424 36 in in IN 10_1101-2020_01_28_923532 424 37 2017 2017 CD 10_1101-2020_01_28_923532 424 38 , , , 10_1101-2020_01_28_923532 424 39 we -PRON- PRP 10_1101-2020_01_28_923532 424 40 expected expect VBD 10_1101-2020_01_28_923532 424 41 that that IN 10_1101-2020_01_28_923532 424 42 there there EX 10_1101-2020_01_28_923532 424 43 are be VBP 10_1101-2020_01_28_923532 424 44 now now RB 10_1101-2020_01_28_923532 424 45 additional additional JJ 10_1101-2020_01_28_923532 424 46 genes gene NNS 10_1101-2020_01_28_923532 424 47 for for IN 10_1101-2020_01_28_923532 424 48 which which WDT 10_1101-2020_01_28_923532 424 49 ligand ligand NN 10_1101-2020_01_28_923532 424 50 - - HYPH 10_1101-2020_01_28_923532 424 51 mimicking mimicking NN 10_1101-2020_01_28_923532 424 52 peptides peptide NNS 10_1101-2020_01_28_923532 424 53 are be VBP 10_1101-2020_01_28_923532 424 54 known know VBN 10_1101-2020_01_28_923532 424 55 . . . 10_1101-2020_01_28_923532 425 1 We -PRON- PRP 10_1101-2020_01_28_923532 425 2 found find VBD 10_1101-2020_01_28_923532 425 3 20 20 CD 10_1101-2020_01_28_923532 425 4 additional additional JJ 10_1101-2020_01_28_923532 425 5 genes gene NNS 10_1101-2020_01_28_923532 425 6 and and CC 10_1101-2020_01_28_923532 425 7 those those DT 10_1101-2020_01_28_923532 425 8 are be VBP 10_1101-2020_01_28_923532 425 9 listed list VBN 10_1101-2020_01_28_923532 425 10 in in IN 10_1101-2020_01_28_923532 425 11 Table table NN 10_1101-2020_01_28_923532 425 12 4 4 CD 10_1101-2020_01_28_923532 425 13 . . . 10_1101-2020_01_28_923532 426 1 Thus thus RB 10_1101-2020_01_28_923532 426 2 , , , 10_1101-2020_01_28_923532 426 3 our -PRON- PRP$ 10_1101-2020_01_28_923532 426 4 target target NN 10_1101-2020_01_28_923532 426 5 set set VBN 10_1101-2020_01_28_923532 426 6 analyses analysis NNS 10_1101-2020_01_28_923532 426 7 restricted restrict VBN 10_1101-2020_01_28_923532 426 8 to to IN 10_1101-2020_01_28_923532 426 9 genes gene NNS 10_1101-2020_01_28_923532 426 10 with with IN 10_1101-2020_01_28_923532 426 11 known know VBN 10_1101-2020_01_28_923532 426 12 ligand ligand NN 10_1101-2020_01_28_923532 426 13 - - HYPH 10_1101-2020_01_28_923532 426 14 mimicking mimicking NN 10_1101-2020_01_28_923532 426 15 peptides peptide NNS 10_1101-2020_01_28_923532 426 16 use use VBP 10_1101-2020_01_28_923532 426 17 58 58 CD 10_1101-2020_01_28_923532 426 18 = = SYM 10_1101-2020_01_28_923532 426 19 38 38 CD 10_1101-2020_01_28_923532 426 20 + + SYM 10_1101-2020_01_28_923532 426 21 20 20 CD 10_1101-2020_01_28_923532 426 22 targets target NNS 10_1101-2020_01_28_923532 426 23 . . . 10_1101-2020_01_28_923532 427 1 Table table NN 10_1101-2020_01_28_923532 427 2 3 3 CD 10_1101-2020_01_28_923532 427 3 . . . 10_1101-2020_01_28_923532 428 1 Single single JJ 10_1101-2020_01_28_923532 428 2 proteins protein NNS 10_1101-2020_01_28_923532 428 3 that that WDT 10_1101-2020_01_28_923532 428 4 can can MD 10_1101-2020_01_28_923532 428 5 be be VB 10_1101-2020_01_28_923532 428 6 targeted target VBN 10_1101-2020_01_28_923532 428 7 by by IN 10_1101-2020_01_28_923532 428 8 peptides peptide NNS 10_1101-2020_01_28_923532 428 9 based base VBN 10_1101-2020_01_28_923532 428 10 on on IN 10_1101-2020_01_28_923532 428 11 references reference NNS 10_1101-2020_01_28_923532 428 12 18 18 CD 10_1101-2020_01_28_923532 428 13 , , , 10_1101-2020_01_28_923532 428 14 19 19 CD 10_1101-2020_01_28_923532 428 15 and and CC 10_1101-2020_01_28_923532 428 16 are be VBP 10_1101-2020_01_28_923532 428 17 expressed express VBN 10_1101-2020_01_28_923532 428 18 on on IN 10_1101-2020_01_28_923532 428 19 the the DT 10_1101-2020_01_28_923532 428 20 cell cell NN 10_1101-2020_01_28_923532 428 21 surface77 surface77 NN 10_1101-2020_01_28_923532 428 22 . . . 10_1101-2020_01_28_923532 429 1 For for IN 10_1101-2020_01_28_923532 429 2 easier easy JJR 10_1101-2020_01_28_923532 429 3 correspondence correspondence NN 10_1101-2020_01_28_923532 429 4 with with IN 10_1101-2020_01_28_923532 429 5 the the DT 10_1101-2020_01_28_923532 429 6 gene gene NN 10_1101-2020_01_28_923532 429 7 expression expression NN 10_1101-2020_01_28_923532 429 8 data datum NNS 10_1101-2020_01_28_923532 429 9 , , , 10_1101-2020_01_28_923532 429 10 the the DT 10_1101-2020_01_28_923532 429 11 entries entry NNS 10_1101-2020_01_28_923532 429 12 are be VBP 10_1101-2020_01_28_923532 429 13 listed list VBN 10_1101-2020_01_28_923532 429 14 in in IN 10_1101-2020_01_28_923532 429 15 alphabetical alphabetical JJ 10_1101-2020_01_28_923532 429 16 order order NN 10_1101-2020_01_28_923532 429 17 by by IN 10_1101-2020_01_28_923532 429 18 gene gene NN 10_1101-2020_01_28_923532 429 19 symbol symbol NN 10_1101-2020_01_28_923532 429 20 . . . 10_1101-2020_01_28_923532 430 1 In in IN 10_1101-2020_01_28_923532 430 2 this this DT 10_1101-2020_01_28_923532 430 3 table table NN 10_1101-2020_01_28_923532 430 4 , , , 10_1101-2020_01_28_923532 430 5 we -PRON- PRP 10_1101-2020_01_28_923532 430 6 follow follow VBP 10_1101-2020_01_28_923532 430 7 the the DT 10_1101-2020_01_28_923532 430 8 clinical clinical JJ 10_1101-2020_01_28_923532 430 9 genetics genetic NNS 10_1101-2020_01_28_923532 430 10 formatting format VBG 10_1101-2020_01_28_923532 430 11 convention convention NN 10_1101-2020_01_28_923532 430 12 that that WDT 10_1101-2020_01_28_923532 430 13 proteins protein NNS 10_1101-2020_01_28_923532 430 14 are be VBP 10_1101-2020_01_28_923532 430 15 in in IN 10_1101-2020_01_28_923532 430 16 Roman roman JJ 10_1101-2020_01_28_923532 430 17 and and CC 10_1101-2020_01_28_923532 430 18 gene gene NN 10_1101-2020_01_28_923532 430 19 symbols symbol NNS 10_1101-2020_01_28_923532 430 20 are be VBP 10_1101-2020_01_28_923532 430 21 in in IN 10_1101-2020_01_28_923532 430 22 italics italic NNS 10_1101-2020_01_28_923532 430 23 . . . 10_1101-2020_01_28_923532 431 1 Protein Protein NNP 10_1101-2020_01_28_923532 431 2 Gene Gene NNP 10_1101-2020_01_28_923532 431 3 Symbol Symbol NNP 10_1101-2020_01_28_923532 431 4 APN APN NNP 10_1101-2020_01_28_923532 431 5 / / SYM 10_1101-2020_01_28_923532 431 6 CD13 CD13 NNP 10_1101-2020_01_28_923532 431 7 ANPEP ANPEP NNP 10_1101-2020_01_28_923532 431 8 APP APP NNP 10_1101-2020_01_28_923532 431 9 APP APP NNP 10_1101-2020_01_28_923532 431 10 PD PD NNP 10_1101-2020_01_28_923532 431 11 - - HYPH 10_1101-2020_01_28_923532 431 12 L1 L1 NNP 10_1101-2020_01_28_923532 431 13 CD274 CD274 NNP 10_1101-2020_01_28_923532 431 14 CD44 CD44 NNP 10_1101-2020_01_28_923532 431 15 CD44 CD44 NNP 10_1101-2020_01_28_923532 431 16 P32 P32 NNP 10_1101-2020_01_28_923532 431 17 / / SYM 10_1101-2020_01_28_923532 431 18 gC1qR gC1qR NNP 10_1101-2020_01_28_923532 431 19 CD93 CD93 NNP 10_1101-2020_01_28_923532 431 20 E E NNP 10_1101-2020_01_28_923532 431 21 - - HYPH 10_1101-2020_01_28_923532 431 22 cadherin cadherin NNP 10_1101-2020_01_28_923532 431 23 CDH1 CDH1 NNP 10_1101-2020_01_28_923532 431 24 N N NNP 10_1101-2020_01_28_923532 431 25 - - HYPH 10_1101-2020_01_28_923532 431 26 cadherin cadherin NN 10_1101-2020_01_28_923532 431 27 CDH2 CDH2 NNP 10_1101-2020_01_28_923532 431 28 CD21 CD21 NNP 10_1101-2020_01_28_923532 431 29 CR2 CR2 NNP 10_1101-2020_01_28_923532 431 30 EGFR EGFR NNP 10_1101-2020_01_28_923532 431 31 EGFR egfr NN 10_1101-2020_01_28_923532 431 32 Epha2 epha2 NN 10_1101-2020_01_28_923532 431 33 EPHA2 epha2 XX 10_1101-2020_01_28_923532 431 34 EphB4 EphB4 NNP 10_1101-2020_01_28_923532 431 35 EPHB4 EPHB4 NNP 10_1101-2020_01_28_923532 431 36 HER2 HER2 NNP 10_1101-2020_01_28_923532 431 37 ERBB2 ERBB2 NNS 10_1101-2020_01_28_923532 431 38 FGFR1 fgfr1 CD 10_1101-2020_01_28_923532 431 39 FGFR1 fgfr1 CD 10_1101-2020_01_28_923532 431 40 FGFR2 fgfr2 NN 10_1101-2020_01_28_923532 431 41 FGFR2 FGFR2 NNP 10_1101-2020_01_28_923532 431 42 FGFR3 FGFR3 NNP 10_1101-2020_01_28_923532 431 43 FGFR3 FGFR3 NNP 10_1101-2020_01_28_923532 431 44 105 105 CD 10_1101-2020_01_28_923532 431 45 and and CC 10_1101-2020_01_28_923532 431 46 is be VBZ 10_1101-2020_01_28_923532 431 47 also also RB 10_1101-2020_01_28_923532 431 48 made make VBN 10_1101-2020_01_28_923532 431 49 available available JJ 10_1101-2020_01_28_923532 431 50 for for IN 10_1101-2020_01_28_923532 431 51 use use NN 10_1101-2020_01_28_923532 431 52 under under IN 10_1101-2020_01_28_923532 431 53 a a DT 10_1101-2020_01_28_923532 431 54 CC0 CC0 NNP 10_1101-2020_01_28_923532 431 55 license license NN 10_1101-2020_01_28_923532 431 56 . . . 10_1101-2020_01_28_923532 432 1 ( ( -LRB- 10_1101-2020_01_28_923532 432 2 which which WDT 10_1101-2020_01_28_923532 432 3 was be VBD 10_1101-2020_01_28_923532 432 4 not not RB 10_1101-2020_01_28_923532 432 5 certified certify VBN 10_1101-2020_01_28_923532 432 6 by by IN 10_1101-2020_01_28_923532 432 7 peer peer NN 10_1101-2020_01_28_923532 432 8 review review NN 10_1101-2020_01_28_923532 432 9 ) ) -RRB- 10_1101-2020_01_28_923532 432 10 is be VBZ 10_1101-2020_01_28_923532 432 11 the the DT 10_1101-2020_01_28_923532 432 12 author author NN 10_1101-2020_01_28_923532 432 13 / / SYM 10_1101-2020_01_28_923532 432 14 funder funder NN 10_1101-2020_01_28_923532 432 15 . . . 10_1101-2020_01_28_923532 433 1 This this DT 10_1101-2020_01_28_923532 433 2 article article NN 10_1101-2020_01_28_923532 433 3 is be VBZ 10_1101-2020_01_28_923532 433 4 a a DT 10_1101-2020_01_28_923532 433 5 US US NNP 10_1101-2020_01_28_923532 433 6 Government Government NNP 10_1101-2020_01_28_923532 433 7 work work NN 10_1101-2020_01_28_923532 433 8 . . . 10_1101-2020_01_28_923532 434 1 It -PRON- PRP 10_1101-2020_01_28_923532 434 2 is be VBZ 10_1101-2020_01_28_923532 434 3 not not RB 10_1101-2020_01_28_923532 434 4 subject subject JJ 10_1101-2020_01_28_923532 434 5 to to IN 10_1101-2020_01_28_923532 434 6 copyright copyright NN 10_1101-2020_01_28_923532 434 7 under under IN 10_1101-2020_01_28_923532 434 8 17 17 CD 10_1101-2020_01_28_923532 434 9 USC usc NN 10_1101-2020_01_28_923532 434 10 The the DT 10_1101-2020_01_28_923532 434 11 copyright copyright NN 10_1101-2020_01_28_923532 434 12 holder holder NN 10_1101-2020_01_28_923532 434 13 for for IN 10_1101-2020_01_28_923532 434 14 this this DT 10_1101-2020_01_28_923532 434 15 preprintthis preprintthis NN 10_1101-2020_01_28_923532 434 16 version version NN 10_1101-2020_01_28_923532 434 17 posted post VBD 10_1101-2020_01_28_923532 434 18 February February NNP 10_1101-2020_01_28_923532 434 19 12 12 CD 10_1101-2020_01_28_923532 434 20 , , , 10_1101-2020_01_28_923532 434 21 2021 2021 CD 10_1101-2020_01_28_923532 434 22 . . . 10_1101-2020_01_28_923532 434 23 ; ; : 10_1101-2020_01_28_923532 434 24 https://doi.org/10.1101/2020.01.28.923532doi https://doi.org/10.1101/2020.01.28.923532doi ADD 10_1101-2020_01_28_923532 434 25 : : : 10_1101-2020_01_28_923532 434 26 bioRxiv biorxiv VB 10_1101-2020_01_28_923532 434 27 preprint preprint NN 10_1101-2020_01_28_923532 434 28 https://doi.org/10.1101/2020.01.28.923532 https://doi.org/10.1101/2020.01.28.923532 UH 10_1101-2020_01_28_923532 434 29 34 34 CD 10_1101-2020_01_28_923532 434 30 FGFR4 FGFR4 NNS 10_1101-2020_01_28_923532 434 31 FGFR4 fgfr4 NN 10_1101-2020_01_28_923532 434 32 VEGFR1 VEGFR1 NNP 10_1101-2020_01_28_923532 434 33 FLT1 FLT1 NNP 10_1101-2020_01_28_923532 434 34 VEGFR3 VEGFR3 NNP 10_1101-2020_01_28_923532 434 35 FLT4 FLT4 NNP 10_1101-2020_01_28_923532 434 36 PSMA PSMA NNP 10_1101-2020_01_28_923532 434 37 FOLH1 folh1 NN 10_1101-2020_01_28_923532 434 38 GPC3 GPC3 NNP 10_1101-2020_01_28_923532 434 39 GPC3 GPC3 NNP 10_1101-2020_01_28_923532 434 40 IL-10RA IL-10RA NNP 10_1101-2020_01_28_923532 434 41 IL10RA IL10RA NNP 10_1101-2020_01_28_923532 434 42 IL-11Rα IL-11Rα NNP 10_1101-2020_01_28_923532 434 43 IL11RA IL11RA NNP 10_1101-2020_01_28_923532 434 44 IL-13Rα2 IL-13Rα2 NNP 10_1101-2020_01_28_923532 434 45 IL13RA2 IL13RA2 NNP 10_1101-2020_01_28_923532 434 46 IL-6Rα IL-6Rα NNP 10_1101-2020_01_28_923532 434 47 IL6R il6r NN 10_1101-2020_01_28_923532 434 48 GP130 GP130 NNP 10_1101-2020_01_28_923532 434 49 IL6ST IL6ST NNP 10_1101-2020_01_28_923532 434 50 VEGFR2 VEGFR2 VBD 10_1101-2020_01_28_923532 434 51 KDR KDR NNP 10_1101-2020_01_28_923532 434 52 MUC18 muc18 NN 10_1101-2020_01_28_923532 434 53 MCAM MCAM NNS 10_1101-2020_01_28_923532 434 54 Met Met NNP 10_1101-2020_01_28_923532 434 55 MET MET NNP 10_1101-2020_01_28_923532 434 56 MMP9 MMP9 NNP 10_1101-2020_01_28_923532 434 57 MMP9 MMP9 NNP 10_1101-2020_01_28_923532 434 58 Thomsen Thomsen NNP 10_1101-2020_01_28_923532 434 59 - - HYPH 10_1101-2020_01_28_923532 434 60 Friedenreich Friedenreich NNP 10_1101-2020_01_28_923532 434 61 carbohydrate carbohydrate NN 10_1101-2020_01_28_923532 434 62 antigen antigen NN 10_1101-2020_01_28_923532 434 63 MUC1 MUC1 NNP 10_1101-2020_01_28_923532 434 64 NRP-1 NRP-1 NNP 10_1101-2020_01_28_923532 434 65 NRP1 NRP1 NNP 10_1101-2020_01_28_923532 434 66 PDGFRβ PDGFRβ VBZ 10_1101-2020_01_28_923532 434 67 PDGFRB pdgfrb NN 10_1101-2020_01_28_923532 434 68 CD133 cd133 DT 10_1101-2020_01_28_923532 434 69 PROM1 prom1 NN 10_1101-2020_01_28_923532 434 70 PTPRJ PTPRJ NNP 10_1101-2020_01_28_923532 434 71 PTPRJ ptprj NN 10_1101-2020_01_28_923532 434 72 HSPG HSPG NNS 10_1101-2020_01_28_923532 434 73 SDC2 SDC2 NNP 10_1101-2020_01_28_923532 434 74 E e NN 10_1101-2020_01_28_923532 434 75 - - NN 10_1101-2020_01_28_923532 434 76 selectin selectin JJ 10_1101-2020_01_28_923532 434 77 SELE SELE NNP 10_1101-2020_01_28_923532 434 78 Tie2 Tie2 NNP 10_1101-2020_01_28_923532 434 79 TEK tek FW 10_1101-2020_01_28_923532 434 80 VPAC1 vpac1 FW 10_1101-2020_01_28_923532 434 81 VIPR1 VIPR1 NNP 10_1101-2020_01_28_923532 434 82 Table table NN 10_1101-2020_01_28_923532 434 83 4 4 CD 10_1101-2020_01_28_923532 434 84 . . . 10_1101-2020_01_28_923532 435 1 Single single JJ 10_1101-2020_01_28_923532 435 2 proteins protein NNS 10_1101-2020_01_28_923532 435 3 that that WDT 10_1101-2020_01_28_923532 435 4 can can MD 10_1101-2020_01_28_923532 435 5 be be VB 10_1101-2020_01_28_923532 435 6 targeted target VBN 10_1101-2020_01_28_923532 435 7 by by IN 10_1101-2020_01_28_923532 435 8 ligand ligand NN 10_1101-2020_01_28_923532 435 9 - - HYPH 10_1101-2020_01_28_923532 435 10 mimicking mimic VBG 10_1101-2020_01_28_923532 435 11 peptides peptide NNS 10_1101-2020_01_28_923532 435 12 but but CC 10_1101-2020_01_28_923532 435 13 are be VBP 10_1101-2020_01_28_923532 435 14 not not RB 10_1101-2020_01_28_923532 435 15 included include VBN 10_1101-2020_01_28_923532 435 16 in in IN 10_1101-2020_01_28_923532 435 17 the the DT 10_1101-2020_01_28_923532 435 18 two two CD 10_1101-2020_01_28_923532 435 19 principal principal JJ 10_1101-2020_01_28_923532 435 20 reviews review NNS 10_1101-2020_01_28_923532 435 21 that that WDT 10_1101-2020_01_28_923532 435 22 we -PRON- PRP 10_1101-2020_01_28_923532 435 23 consulted19 consulted19 NNP 10_1101-2020_01_28_923532 435 24 - - : 10_1101-2020_01_28_923532 435 25 20 20 CD 10_1101-2020_01_28_923532 435 26 and and CC 10_1101-2020_01_28_923532 435 27 are be VBP 10_1101-2020_01_28_923532 435 28 among among IN 10_1101-2020_01_28_923532 435 29 1269 1269 CD 10_1101-2020_01_28_923532 435 30 cell cell NN 10_1101-2020_01_28_923532 435 31 surface surface NN 10_1101-2020_01_28_923532 435 32 receptors77 receptors77 NNP 10_1101-2020_01_28_923532 435 33 . . . 10_1101-2020_01_28_923532 436 1 105 105 CD 10_1101-2020_01_28_923532 436 2 and and CC 10_1101-2020_01_28_923532 436 3 is be VBZ 10_1101-2020_01_28_923532 436 4 also also RB 10_1101-2020_01_28_923532 436 5 made make VBN 10_1101-2020_01_28_923532 436 6 available available JJ 10_1101-2020_01_28_923532 436 7 for for IN 10_1101-2020_01_28_923532 436 8 use use NN 10_1101-2020_01_28_923532 436 9 under under IN 10_1101-2020_01_28_923532 436 10 a a DT 10_1101-2020_01_28_923532 436 11 CC0 CC0 NNP 10_1101-2020_01_28_923532 436 12 license license NN 10_1101-2020_01_28_923532 436 13 . . . 10_1101-2020_01_28_923532 437 1 ( ( -LRB- 10_1101-2020_01_28_923532 437 2 which which WDT 10_1101-2020_01_28_923532 437 3 was be VBD 10_1101-2020_01_28_923532 437 4 not not RB 10_1101-2020_01_28_923532 437 5 certified certify VBN 10_1101-2020_01_28_923532 437 6 by by IN 10_1101-2020_01_28_923532 437 7 peer peer NN 10_1101-2020_01_28_923532 437 8 review review NN 10_1101-2020_01_28_923532 437 9 ) ) -RRB- 10_1101-2020_01_28_923532 437 10 is be VBZ 10_1101-2020_01_28_923532 437 11 the the DT 10_1101-2020_01_28_923532 437 12 author author NN 10_1101-2020_01_28_923532 437 13 / / SYM 10_1101-2020_01_28_923532 437 14 funder funder NN 10_1101-2020_01_28_923532 437 15 . . . 10_1101-2020_01_28_923532 438 1 This this DT 10_1101-2020_01_28_923532 438 2 article article NN 10_1101-2020_01_28_923532 438 3 is be VBZ 10_1101-2020_01_28_923532 438 4 a a DT 10_1101-2020_01_28_923532 438 5 US US NNP 10_1101-2020_01_28_923532 438 6 Government Government NNP 10_1101-2020_01_28_923532 438 7 work work NN 10_1101-2020_01_28_923532 438 8 . . . 10_1101-2020_01_28_923532 439 1 It -PRON- PRP 10_1101-2020_01_28_923532 439 2 is be VBZ 10_1101-2020_01_28_923532 439 3 not not RB 10_1101-2020_01_28_923532 439 4 subject subject JJ 10_1101-2020_01_28_923532 439 5 to to IN 10_1101-2020_01_28_923532 439 6 copyright copyright NN 10_1101-2020_01_28_923532 439 7 under under IN 10_1101-2020_01_28_923532 439 8 17 17 CD 10_1101-2020_01_28_923532 439 9 USC usc NN 10_1101-2020_01_28_923532 439 10 The the DT 10_1101-2020_01_28_923532 439 11 copyright copyright NN 10_1101-2020_01_28_923532 439 12 holder holder NN 10_1101-2020_01_28_923532 439 13 for for IN 10_1101-2020_01_28_923532 439 14 this this DT 10_1101-2020_01_28_923532 439 15 preprintthis preprintthis NN 10_1101-2020_01_28_923532 439 16 version version NN 10_1101-2020_01_28_923532 439 17 posted post VBD 10_1101-2020_01_28_923532 439 18 February February NNP 10_1101-2020_01_28_923532 439 19 12 12 CD 10_1101-2020_01_28_923532 439 20 , , , 10_1101-2020_01_28_923532 439 21 2021 2021 CD 10_1101-2020_01_28_923532 439 22 . . . 10_1101-2020_01_28_923532 439 23 ; ; : 10_1101-2020_01_28_923532 439 24 https://doi.org/10.1101/2020.01.28.923532doi https://doi.org/10.1101/2020.01.28.923532doi ADD 10_1101-2020_01_28_923532 439 25 : : : 10_1101-2020_01_28_923532 439 26 bioRxiv biorxiv VB 10_1101-2020_01_28_923532 439 27 preprint preprint NN 10_1101-2020_01_28_923532 439 28 https://doi.org/10.1101/2020.01.28.923532 https://doi.org/10.1101/2020.01.28.923532 UH 10_1101-2020_01_28_923532 439 29 35 35 CD 10_1101-2020_01_28_923532 439 30 Since since IN 10_1101-2020_01_28_923532 439 31 the the DT 10_1101-2020_01_28_923532 439 32 evidence evidence NN 10_1101-2020_01_28_923532 439 33 that that IN 10_1101-2020_01_28_923532 439 34 these these DT 10_1101-2020_01_28_923532 439 35 20 20 CD 10_1101-2020_01_28_923532 439 36 genes gene NNS 10_1101-2020_01_28_923532 439 37 have have VBP 10_1101-2020_01_28_923532 439 38 ligand ligand NN 10_1101-2020_01_28_923532 439 39 - - HYPH 10_1101-2020_01_28_923532 439 40 mimicking mimicking NN 10_1101-2020_01_28_923532 439 41 peptides peptide NNS 10_1101-2020_01_28_923532 439 42 is be VBZ 10_1101-2020_01_28_923532 439 43 scattered scatter VBN 10_1101-2020_01_28_923532 439 44 in in IN 10_1101-2020_01_28_923532 439 45 the the DT 10_1101-2020_01_28_923532 439 46 literature literature NN 10_1101-2020_01_28_923532 439 47 , , , 10_1101-2020_01_28_923532 439 48 we -PRON- PRP 10_1101-2020_01_28_923532 439 49 include include VBP 10_1101-2020_01_28_923532 439 50 at at IN 10_1101-2020_01_28_923532 439 51 least least JJS 10_1101-2020_01_28_923532 439 52 one one CD 10_1101-2020_01_28_923532 439 53 PubMed PubMed NNP 10_1101-2020_01_28_923532 439 54 ID ID NNP 10_1101-2020_01_28_923532 439 55 of of IN 10_1101-2020_01_28_923532 439 56 a a DT 10_1101-2020_01_28_923532 439 57 paper paper NN 10_1101-2020_01_28_923532 439 58 describing describe VBG 10_1101-2020_01_28_923532 439 59 a a DT 10_1101-2020_01_28_923532 439 60 suitable suitable JJ 10_1101-2020_01_28_923532 439 61 peptide peptide NN 10_1101-2020_01_28_923532 439 62 . . . 10_1101-2020_01_28_923532 440 1 Protein protein NN 10_1101-2020_01_28_923532 440 2 Gene Gene NNP 10_1101-2020_01_28_923532 440 3 Symbol Symbol NNP 10_1101-2020_01_28_923532 440 4 At at IN 10_1101-2020_01_28_923532 440 5 Least Least JJS 10_1101-2020_01_28_923532 440 6 One one CD 10_1101-2020_01_28_923532 440 7 PubMed PubMed NNP 10_1101-2020_01_28_923532 440 8 ID ID NNP 10_1101-2020_01_28_923532 440 9 ActRIIB ActRIIB NNP 10_1101-2020_01_28_923532 440 10 ACVR2B ACVR2B NNP 10_1101-2020_01_28_923532 440 11 28955765 28955765 CD 10_1101-2020_01_28_923532 440 12 CD163 CD163 NNP 10_1101-2020_01_28_923532 440 13 CD163 CD163 NNP 10_1101-2020_01_28_923532 440 14 27563889 27563889 CD 10_1101-2020_01_28_923532 440 15 CXCR4 CXCR4 NNS 10_1101-2020_01_28_923532 440 16 CXCR4 CXCR4 NNS 10_1101-2020_01_28_923532 440 17 19482312 19482312 CD 10_1101-2020_01_28_923532 440 18 , , , 10_1101-2020_01_28_923532 440 19 22523575 22523575 CD 10_1101-2020_01_28_923532 440 20 ephrin ephrin NN 10_1101-2020_01_28_923532 440 21 A4 A4 NNP 10_1101-2020_01_28_923532 440 22 EPHA4 EPHA4 NNP 10_1101-2020_01_28_923532 440 23 15681844 15681844 CD 10_1101-2020_01_28_923532 440 24 , , , 10_1101-2020_01_28_923532 440 25 22523575 22523575 CD 10_1101-2020_01_28_923532 440 26 ephrin ephrin NN 10_1101-2020_01_28_923532 440 27 B1 B1 NNP 10_1101-2020_01_28_923532 440 28 EPHB1 EPHB1 NNP 10_1101-2020_01_28_923532 440 29 15722342 15722342 CD 10_1101-2020_01_28_923532 440 30 , , , 10_1101-2020_01_28_923532 440 31 22523575 22523575 CD 10_1101-2020_01_28_923532 440 32 ephrin ephrin NN 10_1101-2020_01_28_923532 440 33 B2 B2 NNP 10_1101-2020_01_28_923532 440 34 EPHB2 EPHB2 NNP 10_1101-2020_01_28_923532 440 35 15722342 15722342 CD 10_1101-2020_01_28_923532 440 36 , , , 10_1101-2020_01_28_923532 440 37 22523575 22523575 CD 10_1101-2020_01_28_923532 440 38 ephrin ephrin NNP 10_1101-2020_01_28_923532 440 39 B3 B3 NNP 10_1101-2020_01_28_923532 440 40 EPHB3 EPHB3 NNS 10_1101-2020_01_28_923532 440 41 15722342 15722342 CD 10_1101-2020_01_28_923532 440 42 , , , 10_1101-2020_01_28_923532 440 43 22523575 22523575 CD 10_1101-2020_01_28_923532 440 44 gonadotrophin gonadotrophin NN 10_1101-2020_01_28_923532 440 45 releasing release VBG 10_1101-2020_01_28_923532 440 46 hormone hormone NN 10_1101-2020_01_28_923532 440 47 receptor receptor NN 10_1101-2020_01_28_923532 440 48 GNRHR GNRHR NNP 10_1101-2020_01_28_923532 440 49 20814857 20814857 CD 10_1101-2020_01_28_923532 440 50 , , , 10_1101-2020_01_28_923532 440 51 22523575 22523575 CD 10_1101-2020_01_28_923532 440 52 G G NNP 10_1101-2020_01_28_923532 440 53 Protein Protein NNP 10_1101-2020_01_28_923532 440 54 coupled couple VBN 10_1101-2020_01_28_923532 440 55 receptor receptor NN 10_1101-2020_01_28_923532 440 56 55 55 CD 10_1101-2020_01_28_923532 440 57 GPR55 gpr55 CD 10_1101-2020_01_28_923532 440 58 28029647 28029647 CD 10_1101-2020_01_28_923532 440 59 bombesin bombesin NNP 10_1101-2020_01_28_923532 440 60 receptor receptor NN 10_1101-2020_01_28_923532 440 61 2 2 CD 10_1101-2020_01_28_923532 440 62 GRPR GRPR NNP 10_1101-2020_01_28_923532 440 63 20814857 20814857 CD 10_1101-2020_01_28_923532 440 64 , , , 10_1101-2020_01_28_923532 440 65 22523575 22523575 CD 10_1101-2020_01_28_923532 440 66 IL4 IL4 NNP 10_1101-2020_01_28_923532 440 67 receptor receptor NN 10_1101-2020_01_28_923532 440 68 IL4R il4r POS 10_1101-2020_01_28_923532 440 69 19012727 19012727 CD 10_1101-2020_01_28_923532 440 70 low low JJ 10_1101-2020_01_28_923532 440 71 density density NN 10_1101-2020_01_28_923532 440 72 lipoprotein lipoprotein NNP 10_1101-2020_01_28_923532 440 73 receptor receptor NN 10_1101-2020_01_28_923532 440 74 LDLR LDLR NNP 10_1101-2020_01_28_923532 440 75 27656777 27656777 CD 10_1101-2020_01_28_923532 440 76 leptin leptin NNP 10_1101-2020_01_28_923532 440 77 receptor receptor NNP 10_1101-2020_01_28_923532 440 78 LEPR LEPR NNP 10_1101-2020_01_28_923532 440 79 19233229 19233229 CD 10_1101-2020_01_28_923532 440 80 , , , 10_1101-2020_01_28_923532 440 81 26265355 26265355 CD 10_1101-2020_01_28_923532 440 82 LRP1 LRP1 NNP 10_1101-2020_01_28_923532 440 83 LRP1 LRP1 NNP 10_1101-2020_01_28_923532 440 84 29090274 29090274 CD 10_1101-2020_01_28_923532 440 85 melanocortin melanocortin NNP 10_1101-2020_01_28_923532 440 86 1 1 CD 10_1101-2020_01_28_923532 440 87 receptor receptor NN 10_1101-2020_01_28_923532 440 88 MC1R MC1R NNP 10_1101-2020_01_28_923532 440 89 22964391 22964391 CD 10_1101-2020_01_28_923532 440 90 melanocortin melanocortin NNP 10_1101-2020_01_28_923532 440 91 4 4 CD 10_1101-2020_01_28_923532 440 92 receptor receptor NN 10_1101-2020_01_28_923532 440 93 MC4R MC4R NNP 10_1101-2020_01_28_923532 440 94 17591746 17591746 CD 10_1101-2020_01_28_923532 440 95 CD206 CD206 NNP 10_1101-2020_01_28_923532 440 96 MRC1 MRC1 NNP 10_1101-2020_01_28_923532 440 97 30768279 30768279 CD 10_1101-2020_01_28_923532 440 98 urokinase urokinase NNP 10_1101-2020_01_28_923532 440 99 plasminogen plasminogen NN 10_1101-2020_01_28_923532 440 100 activator activator NN 10_1101-2020_01_28_923532 440 101 receptor receptor NN 10_1101-2020_01_28_923532 440 102 PLAUR PLAUR NNP 10_1101-2020_01_28_923532 440 103 25080049 25080049 CD 10_1101-2020_01_28_923532 440 104 neurokinin-1 neurokinin-1 NNP 10_1101-2020_01_28_923532 440 105 receptor receptor NN 10_1101-2020_01_28_923532 440 106 TACR1 TACR1 NFP 10_1101-2020_01_28_923532 440 107 29498264 29498264 CD 10_1101-2020_01_28_923532 440 108 VPAC2 vpac2 NN 10_1101-2020_01_28_923532 440 109 VIPR2 VIPR2 NNP 10_1101-2020_01_28_923532 440 110 30077368 30077368 CD 10_1101-2020_01_28_923532 440 111 105 105 CD 10_1101-2020_01_28_923532 440 112 and and CC 10_1101-2020_01_28_923532 440 113 is be VBZ 10_1101-2020_01_28_923532 440 114 also also RB 10_1101-2020_01_28_923532 440 115 made make VBN 10_1101-2020_01_28_923532 440 116 available available JJ 10_1101-2020_01_28_923532 440 117 for for IN 10_1101-2020_01_28_923532 440 118 use use NN 10_1101-2020_01_28_923532 440 119 under under IN 10_1101-2020_01_28_923532 440 120 a a DT 10_1101-2020_01_28_923532 440 121 CC0 CC0 NNP 10_1101-2020_01_28_923532 440 122 license license NN 10_1101-2020_01_28_923532 440 123 . . . 10_1101-2020_01_28_923532 441 1 ( ( -LRB- 10_1101-2020_01_28_923532 441 2 which which WDT 10_1101-2020_01_28_923532 441 3 was be VBD 10_1101-2020_01_28_923532 441 4 not not RB 10_1101-2020_01_28_923532 441 5 certified certify VBN 10_1101-2020_01_28_923532 441 6 by by IN 10_1101-2020_01_28_923532 441 7 peer peer NN 10_1101-2020_01_28_923532 441 8 review review NN 10_1101-2020_01_28_923532 441 9 ) ) -RRB- 10_1101-2020_01_28_923532 441 10 is be VBZ 10_1101-2020_01_28_923532 441 11 the the DT 10_1101-2020_01_28_923532 441 12 author author NN 10_1101-2020_01_28_923532 441 13 / / SYM 10_1101-2020_01_28_923532 441 14 funder funder NN 10_1101-2020_01_28_923532 441 15 . . . 10_1101-2020_01_28_923532 442 1 This this DT 10_1101-2020_01_28_923532 442 2 article article NN 10_1101-2020_01_28_923532 442 3 is be VBZ 10_1101-2020_01_28_923532 442 4 a a DT 10_1101-2020_01_28_923532 442 5 US US NNP 10_1101-2020_01_28_923532 442 6 Government Government NNP 10_1101-2020_01_28_923532 442 7 work work NN 10_1101-2020_01_28_923532 442 8 . . . 10_1101-2020_01_28_923532 443 1 It -PRON- PRP 10_1101-2020_01_28_923532 443 2 is be VBZ 10_1101-2020_01_28_923532 443 3 not not RB 10_1101-2020_01_28_923532 443 4 subject subject JJ 10_1101-2020_01_28_923532 443 5 to to IN 10_1101-2020_01_28_923532 443 6 copyright copyright NN 10_1101-2020_01_28_923532 443 7 under under IN 10_1101-2020_01_28_923532 443 8 17 17 CD 10_1101-2020_01_28_923532 443 9 USC usc NN 10_1101-2020_01_28_923532 443 10 The the DT 10_1101-2020_01_28_923532 443 11 copyright copyright NN 10_1101-2020_01_28_923532 443 12 holder holder NN 10_1101-2020_01_28_923532 443 13 for for IN 10_1101-2020_01_28_923532 443 14 this this DT 10_1101-2020_01_28_923532 443 15 preprintthis preprintthis NN 10_1101-2020_01_28_923532 443 16 version version NN 10_1101-2020_01_28_923532 443 17 posted post VBD 10_1101-2020_01_28_923532 443 18 February February NNP 10_1101-2020_01_28_923532 443 19 12 12 CD 10_1101-2020_01_28_923532 443 20 , , , 10_1101-2020_01_28_923532 443 21 2021 2021 CD 10_1101-2020_01_28_923532 443 22 . . . 10_1101-2020_01_28_923532 443 23 ; ; : 10_1101-2020_01_28_923532 443 24 https://doi.org/10.1101/2020.01.28.923532doi https://doi.org/10.1101/2020.01.28.923532doi ADD 10_1101-2020_01_28_923532 443 25 : : : 10_1101-2020_01_28_923532 443 26 bioRxiv biorxiv VB 10_1101-2020_01_28_923532 443 27 preprint preprint NN 10_1101-2020_01_28_923532 443 28 https://doi.org/10.1101/2020.01.28.923532 https://doi.org/10.1101/2020.01.28.923532 ADD 10_1101-2020_01_28_923532 443 29 36 36 CD 10_1101-2020_01_28_923532 443 30 Definition definition NN 10_1101-2020_01_28_923532 443 31 of of IN 10_1101-2020_01_28_923532 443 32 the the DT 10_1101-2020_01_28_923532 443 33 Minimum Minimum NNP 10_1101-2020_01_28_923532 443 34 Hitting Hitting NNP 10_1101-2020_01_28_923532 443 35 Set Set NNP 10_1101-2020_01_28_923532 443 36 Problem Problem NNP 10_1101-2020_01_28_923532 443 37 and and CC 10_1101-2020_01_28_923532 443 38 Solution Solution NNP 10_1101-2020_01_28_923532 443 39 Feasibility Feasibility NNP 10_1101-2020_01_28_923532 443 40 One one CD 10_1101-2020_01_28_923532 443 41 of of IN 10_1101-2020_01_28_923532 443 42 Karp Karp NNP 10_1101-2020_01_28_923532 443 43 ’s ’s POS 10_1101-2020_01_28_923532 443 44 original original JJ 10_1101-2020_01_28_923532 443 45 NP np NN 10_1101-2020_01_28_923532 443 46 - - HYPH 10_1101-2020_01_28_923532 443 47 complete complete JJ 10_1101-2020_01_28_923532 443 48 problems problem NNS 10_1101-2020_01_28_923532 443 49 is be VBZ 10_1101-2020_01_28_923532 443 50 called call VBN 10_1101-2020_01_28_923532 443 51 “ " `` 10_1101-2020_01_28_923532 443 52 hitting hit VBG 10_1101-2020_01_28_923532 443 53 set set NN 10_1101-2020_01_28_923532 443 54 ” " '' 10_1101-2020_01_28_923532 443 55 and and CC 10_1101-2020_01_28_923532 443 56 is be VBZ 10_1101-2020_01_28_923532 443 57 defined define VBN 10_1101-2020_01_28_923532 443 58 as as IN 10_1101-2020_01_28_923532 443 59 follows36 follows36 NNP 10_1101-2020_01_28_923532 443 60 . . . 10_1101-2020_01_28_923532 444 1 Let let VB 10_1101-2020_01_28_923532 444 2 𝑈 𝑈 NNP 10_1101-2020_01_28_923532 444 3 be be VB 10_1101-2020_01_28_923532 444 4 a a DT 10_1101-2020_01_28_923532 444 5 finite finite JJ 10_1101-2020_01_28_923532 444 6 universal universal JJ 10_1101-2020_01_28_923532 444 7 set set NN 10_1101-2020_01_28_923532 444 8 of of IN 10_1101-2020_01_28_923532 444 9 elements element NNS 10_1101-2020_01_28_923532 444 10 . . . 10_1101-2020_01_28_923532 445 1 Let let VB 10_1101-2020_01_28_923532 445 2 𝑆1 𝑆1 NNP 10_1101-2020_01_28_923532 445 3 , , , 10_1101-2020_01_28_923532 445 4 𝑆2 𝑆2 NN 10_1101-2020_01_28_923532 445 5 , , , 10_1101-2020_01_28_923532 445 6 𝑆3 𝑆3 NNP 10_1101-2020_01_28_923532 445 7 , , , 10_1101-2020_01_28_923532 445 8 . . . 10_1101-2020_01_28_923532 446 1 . . . 10_1101-2020_01_28_923532 447 1 . . . 10_1101-2020_01_28_923532 448 1 , , , 10_1101-2020_01_28_923532 448 2 𝑆𝑘 𝑆𝑘 NNP 10_1101-2020_01_28_923532 448 3 be be VB 10_1101-2020_01_28_923532 448 4 subsets subset NNS 10_1101-2020_01_28_923532 448 5 of of IN 10_1101-2020_01_28_923532 448 6 𝑈. 𝑈. NNP 10_1101-2020_01_28_923532 449 1 Is be VBZ 10_1101-2020_01_28_923532 449 2 there there EX 10_1101-2020_01_28_923532 449 3 a a DT 10_1101-2020_01_28_923532 449 4 small small JJ 10_1101-2020_01_28_923532 449 5 subset subset NN 10_1101-2020_01_28_923532 449 6 𝐻 𝐻 NNP 10_1101-2020_01_28_923532 449 7 ⊆ ⊆ ADD 10_1101-2020_01_28_923532 449 8 𝑈 𝑈 NNP 10_1101-2020_01_28_923532 449 9 such such JJ 10_1101-2020_01_28_923532 449 10 that that IN 10_1101-2020_01_28_923532 449 11 for for IN 10_1101-2020_01_28_923532 449 12 𝑖 𝑖 NNP 10_1101-2020_01_28_923532 449 13 = = SYM 10_1101-2020_01_28_923532 449 14 1 1 CD 10_1101-2020_01_28_923532 449 15 , , , 10_1101-2020_01_28_923532 449 16 2 2 CD 10_1101-2020_01_28_923532 449 17 , , , 10_1101-2020_01_28_923532 449 18 3 3 CD 10_1101-2020_01_28_923532 449 19 , , , 10_1101-2020_01_28_923532 449 20 . . . 10_1101-2020_01_28_923532 450 1 . . . 10_1101-2020_01_28_923532 451 1 . . . 10_1101-2020_01_28_923532 452 1 , , , 10_1101-2020_01_28_923532 452 2 𝑘 𝑘 NNP 10_1101-2020_01_28_923532 452 3 , , , 10_1101-2020_01_28_923532 452 4 𝑆𝑖 𝑆𝑖 NNP 10_1101-2020_01_28_923532 452 5 ∩ ∩ NN 10_1101-2020_01_28_923532 452 6 𝐻 𝐻 NNP 10_1101-2020_01_28_923532 452 7 is be VBZ 10_1101-2020_01_28_923532 452 8 non non JJ 10_1101-2020_01_28_923532 452 9 - - JJ 10_1101-2020_01_28_923532 452 10 empty empty JJ 10_1101-2020_01_28_923532 452 11 . . . 10_1101-2020_01_28_923532 453 1 In in IN 10_1101-2020_01_28_923532 453 2 our -PRON- PRP$ 10_1101-2020_01_28_923532 453 3 setting setting NN 10_1101-2020_01_28_923532 453 4 , , , 10_1101-2020_01_28_923532 453 5 U u NN 10_1101-2020_01_28_923532 453 6 is be VBZ 10_1101-2020_01_28_923532 453 7 the the DT 10_1101-2020_01_28_923532 453 8 set set NN 10_1101-2020_01_28_923532 453 9 of of IN 10_1101-2020_01_28_923532 453 10 target target NN 10_1101-2020_01_28_923532 453 11 genes gene NNS 10_1101-2020_01_28_923532 453 12 and and CC 10_1101-2020_01_28_923532 453 13 the the DT 10_1101-2020_01_28_923532 453 14 subsets subset NNS 10_1101-2020_01_28_923532 453 15 𝑆𝑖are 𝑆𝑖are NNP 10_1101-2020_01_28_923532 453 16 the the DT 10_1101-2020_01_28_923532 453 17 single single JJ 10_1101-2020_01_28_923532 453 18 cells cell NNS 10_1101-2020_01_28_923532 453 19 . . . 10_1101-2020_01_28_923532 454 1 In in IN 10_1101-2020_01_28_923532 454 2 reference reference NN 10_1101-2020_01_28_923532 454 3 78 78 CD 10_1101-2020_01_28_923532 454 4 , , , 10_1101-2020_01_28_923532 454 5 numerous numerous JJ 10_1101-2020_01_28_923532 454 6 applications application NNS 10_1101-2020_01_28_923532 454 7 for for IN 10_1101-2020_01_28_923532 454 8 hitting hit VBG 10_1101-2020_01_28_923532 454 9 set set VBN 10_1101-2020_01_28_923532 454 10 and and CC 10_1101-2020_01_28_923532 454 11 the the DT 10_1101-2020_01_28_923532 454 12 closely closely RB 10_1101-2020_01_28_923532 454 13 related related JJ 10_1101-2020_01_28_923532 454 14 problems problem NNS 10_1101-2020_01_28_923532 454 15 of of IN 10_1101-2020_01_28_923532 454 16 subset subset NN 10_1101-2020_01_28_923532 454 17 cover cover NN 10_1101-2020_01_28_923532 454 18 and and CC 10_1101-2020_01_28_923532 454 19 dominating dominating JJ 10_1101-2020_01_28_923532 454 20 set set NN 10_1101-2020_01_28_923532 454 21 are be VBP 10_1101-2020_01_28_923532 454 22 described describe VBN 10_1101-2020_01_28_923532 454 23 ; ; : 10_1101-2020_01_28_923532 454 24 in in IN 10_1101-2020_01_28_923532 454 25 addition addition NN 10_1101-2020_01_28_923532 454 26 , , , 10_1101-2020_01_28_923532 454 27 practical practical JJ 10_1101-2020_01_28_923532 454 28 algorithms algorithm NNS 10_1101-2020_01_28_923532 454 29 for for IN 10_1101-2020_01_28_923532 454 30 hitting hit VBG 10_1101-2020_01_28_923532 454 31 set set NN 10_1101-2020_01_28_923532 454 32 are be VBP 10_1101-2020_01_28_923532 454 33 compared compare VBN 10_1101-2020_01_28_923532 454 34 on on IN 10_1101-2020_01_28_923532 454 35 real real JJ 10_1101-2020_01_28_923532 454 36 and and CC 10_1101-2020_01_28_923532 454 37 synthetic synthetic JJ 10_1101-2020_01_28_923532 454 38 data datum NNS 10_1101-2020_01_28_923532 454 39 . . . 10_1101-2020_01_28_923532 455 1 Among among IN 10_1101-2020_01_28_923532 455 2 the the DT 10_1101-2020_01_28_923532 455 3 applications application NNS 10_1101-2020_01_28_923532 455 4 of of IN 10_1101-2020_01_28_923532 455 5 hitting hit VBG 10_1101-2020_01_28_923532 455 6 set set VBN 10_1101-2020_01_28_923532 455 7 and and CC 10_1101-2020_01_28_923532 455 8 closely closely RB 10_1101-2020_01_28_923532 455 9 related related JJ 10_1101-2020_01_28_923532 455 10 NP NP NNP 10_1101-2020_01_28_923532 455 11 - - HYPH 10_1101-2020_01_28_923532 455 12 complete complete JJ 10_1101-2020_01_28_923532 455 13 problems problem NNS 10_1101-2020_01_28_923532 455 14 in in IN 10_1101-2020_01_28_923532 455 15 biology biology NN 10_1101-2020_01_28_923532 455 16 and and CC 10_1101-2020_01_28_923532 455 17 biochemistry biochemistry NN 10_1101-2020_01_28_923532 455 18 are be VBP 10_1101-2020_01_28_923532 455 19 stability stability NN 10_1101-2020_01_28_923532 455 20 analysis analysis NN 10_1101-2020_01_28_923532 455 21 of of IN 10_1101-2020_01_28_923532 455 22 metabolic metabolic NNP 10_1101-2020_01_28_923532 455 23 networks79 networks79 NNP 10_1101-2020_01_28_923532 455 24 - - HYPH 10_1101-2020_01_28_923532 455 25 83 83 CD 10_1101-2020_01_28_923532 455 26 , , , 10_1101-2020_01_28_923532 455 27 identification identification NN 10_1101-2020_01_28_923532 455 28 of of IN 10_1101-2020_01_28_923532 455 29 critical critical JJ 10_1101-2020_01_28_923532 455 30 paths path NNS 10_1101-2020_01_28_923532 455 31 in in IN 10_1101-2020_01_28_923532 455 32 gene gene NN 10_1101-2020_01_28_923532 455 33 signaling signaling NN 10_1101-2020_01_28_923532 455 34 and and CC 10_1101-2020_01_28_923532 455 35 regulatory regulatory JJ 10_1101-2020_01_28_923532 455 36 networks84 networks84 NNP 10_1101-2020_01_28_923532 455 37 - - HYPH 10_1101-2020_01_28_923532 455 38 86 86 CD 10_1101-2020_01_28_923532 455 39 and and CC 10_1101-2020_01_28_923532 455 40 selection selection NN 10_1101-2020_01_28_923532 455 41 of of IN 10_1101-2020_01_28_923532 455 42 a a DT 10_1101-2020_01_28_923532 455 43 set set NN 10_1101-2020_01_28_923532 455 44 of of IN 10_1101-2020_01_28_923532 455 45 drugs drug NNS 10_1101-2020_01_28_923532 455 46 to to TO 10_1101-2020_01_28_923532 455 47 treat treat VB 10_1101-2020_01_28_923532 455 48 cell cell NN 10_1101-2020_01_28_923532 455 49 lines87 lines87 NNP 10_1101-2020_01_28_923532 455 50 - - HYPH 10_1101-2020_01_28_923532 455 51 88 88 CD 10_1101-2020_01_28_923532 455 52 or or CC 10_1101-2020_01_28_923532 455 53 single single JJ 10_1101-2020_01_28_923532 455 54 patients89 patients89 NNP 10_1101-2020_01_28_923532 455 55 - - SYM 10_1101-2020_01_28_923532 455 56 90 90 CD 10_1101-2020_01_28_923532 455 57 . . . 10_1101-2020_01_28_923532 456 1 More More JJR 10_1101-2020_01_28_923532 456 2 information information NN 10_1101-2020_01_28_923532 456 3 about about IN 10_1101-2020_01_28_923532 456 4 related related JJ 10_1101-2020_01_28_923532 456 5 work work NN 10_1101-2020_01_28_923532 456 6 can can MD 10_1101-2020_01_28_923532 456 7 be be VB 10_1101-2020_01_28_923532 456 8 found find VBN 10_1101-2020_01_28_923532 456 9 in in IN 10_1101-2020_01_28_923532 456 10 Supplementary Supplementary NNP 10_1101-2020_01_28_923532 456 11 Materials Materials NNP 10_1101-2020_01_28_923532 456 12 1 1 CD 10_1101-2020_01_28_923532 456 13 . . . 10_1101-2020_01_28_923532 457 1 Two two CD 10_1101-2020_01_28_923532 457 2 different different JJ 10_1101-2020_01_28_923532 457 3 difficulties difficulty NNS 10_1101-2020_01_28_923532 457 4 arising arise VBG 10_1101-2020_01_28_923532 457 5 in in IN 10_1101-2020_01_28_923532 457 6 problems problem NNS 10_1101-2020_01_28_923532 457 7 such such JJ 10_1101-2020_01_28_923532 457 8 as as IN 10_1101-2020_01_28_923532 457 9 hitting hit VBG 10_1101-2020_01_28_923532 457 10 set set VBN 10_1101-2020_01_28_923532 457 11 are be VBP 10_1101-2020_01_28_923532 457 12 that that IN 10_1101-2020_01_28_923532 457 13 1 1 LS 10_1101-2020_01_28_923532 457 14 ) ) -RRB- 10_1101-2020_01_28_923532 457 15 an an DT 10_1101-2020_01_28_923532 457 16 instance instance NN 10_1101-2020_01_28_923532 457 17 may may MD 10_1101-2020_01_28_923532 457 18 be be VB 10_1101-2020_01_28_923532 457 19 infeasible infeasible JJ 10_1101-2020_01_28_923532 457 20 meaning meaning NN 10_1101-2020_01_28_923532 457 21 that that IN 10_1101-2020_01_28_923532 457 22 there there EX 10_1101-2020_01_28_923532 457 23 does do VBZ 10_1101-2020_01_28_923532 457 24 not not RB 10_1101-2020_01_28_923532 457 25 exist exist VB 10_1101-2020_01_28_923532 457 26 a a DT 10_1101-2020_01_28_923532 457 27 solution solution NN 10_1101-2020_01_28_923532 457 28 satisfying satisfy VBG 10_1101-2020_01_28_923532 457 29 all all DT 10_1101-2020_01_28_923532 457 30 constraints constraint NNS 10_1101-2020_01_28_923532 457 31 and and CC 10_1101-2020_01_28_923532 457 32 2 2 LS 10_1101-2020_01_28_923532 457 33 ) ) -RRB- 10_1101-2020_01_28_923532 457 34 an an DT 10_1101-2020_01_28_923532 457 35 instance instance NN 10_1101-2020_01_28_923532 457 36 may may MD 10_1101-2020_01_28_923532 457 37 be be VB 10_1101-2020_01_28_923532 457 38 intractable intractable JJ 10_1101-2020_01_28_923532 457 39 meaning meaning NN 10_1101-2020_01_28_923532 457 40 that that IN 10_1101-2020_01_28_923532 457 41 in in IN 10_1101-2020_01_28_923532 457 42 the the DT 10_1101-2020_01_28_923532 457 43 time time NN 10_1101-2020_01_28_923532 457 44 available available JJ 10_1101-2020_01_28_923532 457 45 , , , 10_1101-2020_01_28_923532 457 46 one one PRP 10_1101-2020_01_28_923532 457 47 can can MD 10_1101-2020_01_28_923532 457 48 not not RB 10_1101-2020_01_28_923532 457 49 either either RB 10_1101-2020_01_28_923532 457 50 i i PRP 10_1101-2020_01_28_923532 457 51 ) ) -RRB- 10_1101-2020_01_28_923532 457 52 prove prove VBP 10_1101-2020_01_28_923532 457 53 that that IN 10_1101-2020_01_28_923532 457 54 the the DT 10_1101-2020_01_28_923532 457 55 instance instance NN 10_1101-2020_01_28_923532 457 56 is be VBZ 10_1101-2020_01_28_923532 457 57 infeasible infeasible JJ 10_1101-2020_01_28_923532 457 58 or or CC 10_1101-2020_01_28_923532 457 59 ii ii LS 10_1101-2020_01_28_923532 457 60 ) ) -RRB- 10_1101-2020_01_28_923532 457 61 find find VBP 10_1101-2020_01_28_923532 457 62 an an DT 10_1101-2020_01_28_923532 457 63 optimal optimal JJ 10_1101-2020_01_28_923532 457 64 feasible feasible JJ 10_1101-2020_01_28_923532 457 65 solution solution NN 10_1101-2020_01_28_923532 457 66 . . . 10_1101-2020_01_28_923532 458 1 All all DT 10_1101-2020_01_28_923532 458 2 instances instance NNS 10_1101-2020_01_28_923532 458 3 of of IN 10_1101-2020_01_28_923532 458 4 minimum minimum JJ 10_1101-2020_01_28_923532 458 5 hitting hitting NN 10_1101-2020_01_28_923532 458 6 set set NN 10_1101-2020_01_28_923532 458 7 that that IN 10_1101-2020_01_28_923532 458 8 we -PRON- PRP 10_1101-2020_01_28_923532 458 9 considered consider VBD 10_1101-2020_01_28_923532 458 10 were be VBD 10_1101-2020_01_28_923532 458 11 tractable tractable JJ 10_1101-2020_01_28_923532 458 12 on on IN 10_1101-2020_01_28_923532 458 13 the the DT 10_1101-2020_01_28_923532 458 14 NIH NIH NNP 10_1101-2020_01_28_923532 458 15 Biowulf Biowulf NNP 10_1101-2020_01_28_923532 458 16 system system NN 10_1101-2020_01_28_923532 458 17 . . . 10_1101-2020_01_28_923532 459 1 Many many JJ 10_1101-2020_01_28_923532 459 2 instances instance NNS 10_1101-2020_01_28_923532 459 3 were be VBD 10_1101-2020_01_28_923532 459 4 provably provably RB 10_1101-2020_01_28_923532 459 5 infeasible infeasible JJ 10_1101-2020_01_28_923532 459 6 ; ; : 10_1101-2020_01_28_923532 459 7 in in IN 10_1101-2020_01_28_923532 459 8 almost almost RB 10_1101-2020_01_28_923532 459 9 all all DT 10_1101-2020_01_28_923532 459 10 cases case NNS 10_1101-2020_01_28_923532 459 11 . . . 10_1101-2020_01_28_923532 460 1 we -PRON- PRP 10_1101-2020_01_28_923532 460 2 did do VBD 10_1101-2020_01_28_923532 460 3 not not RB 10_1101-2020_01_28_923532 460 4 plot plot VB 10_1101-2020_01_28_923532 460 5 the the DT 10_1101-2020_01_28_923532 460 6 infeasible infeasible JJ 10_1101-2020_01_28_923532 460 7 parameter parameter NN 10_1101-2020_01_28_923532 460 8 combinations combination NNS 10_1101-2020_01_28_923532 460 9 . . . 10_1101-2020_01_28_923532 461 1 However however RB 10_1101-2020_01_28_923532 461 2 , , , 10_1101-2020_01_28_923532 461 3 in in IN 10_1101-2020_01_28_923532 461 4 Figure figure NN 10_1101-2020_01_28_923532 461 5 4 4 CD 10_1101-2020_01_28_923532 461 6 , , , 10_1101-2020_01_28_923532 461 7 the the DT 10_1101-2020_01_28_923532 461 8 instance instance NN 10_1101-2020_01_28_923532 461 9 for for IN 10_1101-2020_01_28_923532 461 10 the the DT 10_1101-2020_01_28_923532 461 11 melanoma melanoma NNP 10_1101-2020_01_28_923532 461 12 data datum NNS 10_1101-2020_01_28_923532 461 13 set set VBN 10_1101-2020_01_28_923532 461 14 with with IN 10_1101-2020_01_28_923532 461 15 the the DT 10_1101-2020_01_28_923532 461 16 more more RBR 10_1101-2020_01_28_923532 461 17 stringent stringent JJ 10_1101-2020_01_28_923532 461 18 parameters parameter NNS 10_1101-2020_01_28_923532 461 19 was be VBD 10_1101-2020_01_28_923532 461 20 infeasible infeasible JJ 10_1101-2020_01_28_923532 461 21 because because IN 10_1101-2020_01_28_923532 461 22 of of IN 10_1101-2020_01_28_923532 461 23 only only RB 10_1101-2020_01_28_923532 461 24 one one CD 10_1101-2020_01_28_923532 461 25 patient patient JJ 10_1101-2020_01_28_923532 461 26 sample sample NN 10_1101-2020_01_28_923532 461 27 , , , 10_1101-2020_01_28_923532 461 28 so so RB 10_1101-2020_01_28_923532 461 29 we -PRON- PRP 10_1101-2020_01_28_923532 461 30 omitted omit VBD 10_1101-2020_01_28_923532 461 31 that that DT 10_1101-2020_01_28_923532 461 32 patient patient NN 10_1101-2020_01_28_923532 461 33 for for IN 10_1101-2020_01_28_923532 461 34 both both DT 10_1101-2020_01_28_923532 461 35 parameter parameter NN 10_1101-2020_01_28_923532 461 36 settings setting NNS 10_1101-2020_01_28_923532 461 37 in in IN 10_1101-2020_01_28_923532 461 38 Figure Figure NNP 10_1101-2020_01_28_923532 461 39 4 4 CD 10_1101-2020_01_28_923532 461 40 . . . 10_1101-2020_01_28_923532 462 1 Basic Basic NNP 10_1101-2020_01_28_923532 462 2 Optimal Optimal NNP 10_1101-2020_01_28_923532 462 3 Target target NN 10_1101-2020_01_28_923532 462 4 Set Set NNP 10_1101-2020_01_28_923532 462 5 Formulation Formulation NNP 10_1101-2020_01_28_923532 462 6 Given give VBN 10_1101-2020_01_28_923532 462 7 a a DT 10_1101-2020_01_28_923532 462 8 collection collection NN 10_1101-2020_01_28_923532 462 9 𝑆 𝑆 NN 10_1101-2020_01_28_923532 462 10 = = SYM 10_1101-2020_01_28_923532 462 11 { { -LRB- 10_1101-2020_01_28_923532 462 12 𝑆1 𝑆1 NNP 10_1101-2020_01_28_923532 462 13 , , , 10_1101-2020_01_28_923532 462 14 𝑆2 𝑆2 NN 10_1101-2020_01_28_923532 462 15 , , , 10_1101-2020_01_28_923532 462 16 𝑆3 𝑆3 NNP 10_1101-2020_01_28_923532 462 17 , , , 10_1101-2020_01_28_923532 462 18 . . . 10_1101-2020_01_28_923532 463 1 . . . 10_1101-2020_01_28_923532 464 1 . . . 10_1101-2020_01_28_923532 464 2 } } -RRB- 10_1101-2020_01_28_923532 465 1 of of IN 10_1101-2020_01_28_923532 465 2 subsets subset NNS 10_1101-2020_01_28_923532 465 3 of of IN 10_1101-2020_01_28_923532 465 4 a a DT 10_1101-2020_01_28_923532 465 5 set set VBN 10_1101-2020_01_28_923532 465 6 𝑈 𝑈 NN 10_1101-2020_01_28_923532 465 7 , , , 10_1101-2020_01_28_923532 465 8 the the DT 10_1101-2020_01_28_923532 465 9 hitting hitting NN 10_1101-2020_01_28_923532 465 10 set set NN 10_1101-2020_01_28_923532 465 11 problem problem NN 10_1101-2020_01_28_923532 465 12 is be VBZ 10_1101-2020_01_28_923532 465 13 to to TO 10_1101-2020_01_28_923532 465 14 find find VB 10_1101-2020_01_28_923532 465 15 the the DT 10_1101-2020_01_28_923532 465 16 smallest small JJS 10_1101-2020_01_28_923532 465 17 subset subset NN 10_1101-2020_01_28_923532 465 18 𝐻 𝐻 NNP 10_1101-2020_01_28_923532 465 19 ⊆ ⊆ ADD 10_1101-2020_01_28_923532 465 20 𝑈 𝑈 NN 10_1101-2020_01_28_923532 465 21 that that WDT 10_1101-2020_01_28_923532 465 22 intersects intersect VBZ 10_1101-2020_01_28_923532 465 23 every every DT 10_1101-2020_01_28_923532 465 24 set set NN 10_1101-2020_01_28_923532 465 25 in in IN 10_1101-2020_01_28_923532 465 26 𝑆. 𝑆. NN 10_1101-2020_01_28_923532 466 1 The the DT 10_1101-2020_01_28_923532 466 2 hitting hit VBG 10_1101-2020_01_28_923532 466 3 set set NN 10_1101-2020_01_28_923532 466 4 problem problem NN 10_1101-2020_01_28_923532 466 5 is be VBZ 10_1101-2020_01_28_923532 466 6 equivalent equivalent JJ 10_1101-2020_01_28_923532 466 7 to to IN 10_1101-2020_01_28_923532 466 8 the the DT 10_1101-2020_01_28_923532 466 9 set set VBN 10_1101-2020_01_28_923532 466 10 cover cover NN 10_1101-2020_01_28_923532 466 11 problem problem NN 10_1101-2020_01_28_923532 466 12 and and CC 10_1101-2020_01_28_923532 466 13 hence hence RB 10_1101-2020_01_28_923532 466 14 is be VBZ 10_1101-2020_01_28_923532 466 15 NP np NN 10_1101-2020_01_28_923532 466 16 - - HYPH 10_1101-2020_01_28_923532 466 17 complete complete JJ 10_1101-2020_01_28_923532 466 18 . . . 10_1101-2020_01_28_923532 467 1 The the DT 10_1101-2020_01_28_923532 467 2 following following JJ 10_1101-2020_01_28_923532 467 3 ILP ILP NNP 10_1101-2020_01_28_923532 467 4 formulates formulate VBZ 10_1101-2020_01_28_923532 467 5 this this DT 10_1101-2020_01_28_923532 467 6 target target NN 10_1101-2020_01_28_923532 467 7 set set NN 10_1101-2020_01_28_923532 467 8 problem problem NN 10_1101-2020_01_28_923532 467 9 : : : 10_1101-2020_01_28_923532 467 10 105 105 CD 10_1101-2020_01_28_923532 467 11 and and CC 10_1101-2020_01_28_923532 467 12 is be VBZ 10_1101-2020_01_28_923532 467 13 also also RB 10_1101-2020_01_28_923532 467 14 made make VBN 10_1101-2020_01_28_923532 467 15 available available JJ 10_1101-2020_01_28_923532 467 16 for for IN 10_1101-2020_01_28_923532 467 17 use use NN 10_1101-2020_01_28_923532 467 18 under under IN 10_1101-2020_01_28_923532 467 19 a a DT 10_1101-2020_01_28_923532 467 20 CC0 CC0 NNP 10_1101-2020_01_28_923532 467 21 license license NN 10_1101-2020_01_28_923532 467 22 . . . 10_1101-2020_01_28_923532 468 1 ( ( -LRB- 10_1101-2020_01_28_923532 468 2 which which WDT 10_1101-2020_01_28_923532 468 3 was be VBD 10_1101-2020_01_28_923532 468 4 not not RB 10_1101-2020_01_28_923532 468 5 certified certify VBN 10_1101-2020_01_28_923532 468 6 by by IN 10_1101-2020_01_28_923532 468 7 peer peer NN 10_1101-2020_01_28_923532 468 8 review review NN 10_1101-2020_01_28_923532 468 9 ) ) -RRB- 10_1101-2020_01_28_923532 468 10 is be VBZ 10_1101-2020_01_28_923532 468 11 the the DT 10_1101-2020_01_28_923532 468 12 author author NN 10_1101-2020_01_28_923532 468 13 / / SYM 10_1101-2020_01_28_923532 468 14 funder funder NN 10_1101-2020_01_28_923532 468 15 . . . 10_1101-2020_01_28_923532 469 1 This this DT 10_1101-2020_01_28_923532 469 2 article article NN 10_1101-2020_01_28_923532 469 3 is be VBZ 10_1101-2020_01_28_923532 469 4 a a DT 10_1101-2020_01_28_923532 469 5 US US NNP 10_1101-2020_01_28_923532 469 6 Government Government NNP 10_1101-2020_01_28_923532 469 7 work work NN 10_1101-2020_01_28_923532 469 8 . . . 10_1101-2020_01_28_923532 470 1 It -PRON- PRP 10_1101-2020_01_28_923532 470 2 is be VBZ 10_1101-2020_01_28_923532 470 3 not not RB 10_1101-2020_01_28_923532 470 4 subject subject JJ 10_1101-2020_01_28_923532 470 5 to to IN 10_1101-2020_01_28_923532 470 6 copyright copyright NN 10_1101-2020_01_28_923532 470 7 under under IN 10_1101-2020_01_28_923532 470 8 17 17 CD 10_1101-2020_01_28_923532 470 9 USC usc NN 10_1101-2020_01_28_923532 470 10 The the DT 10_1101-2020_01_28_923532 470 11 copyright copyright NN 10_1101-2020_01_28_923532 470 12 holder holder NN 10_1101-2020_01_28_923532 470 13 for for IN 10_1101-2020_01_28_923532 470 14 this this DT 10_1101-2020_01_28_923532 470 15 preprintthis preprintthis NN 10_1101-2020_01_28_923532 470 16 version version NN 10_1101-2020_01_28_923532 470 17 posted post VBD 10_1101-2020_01_28_923532 470 18 February February NNP 10_1101-2020_01_28_923532 470 19 12 12 CD 10_1101-2020_01_28_923532 470 20 , , , 10_1101-2020_01_28_923532 470 21 2021 2021 CD 10_1101-2020_01_28_923532 470 22 . . . 10_1101-2020_01_28_923532 470 23 ; ; : 10_1101-2020_01_28_923532 470 24 https://doi.org/10.1101/2020.01.28.923532doi https://doi.org/10.1101/2020.01.28.923532doi ADD 10_1101-2020_01_28_923532 470 25 : : : 10_1101-2020_01_28_923532 470 26 bioRxiv biorxiv VB 10_1101-2020_01_28_923532 470 27 preprint preprint NN 10_1101-2020_01_28_923532 470 28 https://doi.org/10.1101/2020.01.28.923532 https://doi.org/10.1101/2020.01.28.923532 UH 10_1101-2020_01_28_923532 470 29 37 37 CD 10_1101-2020_01_28_923532 470 30 𝑚𝑖𝑛 𝑚𝑖𝑛 NN 10_1101-2020_01_28_923532 470 31 ∑ ∑ XX 10_1101-2020_01_28_923532 470 32 𝑔∈𝑈 𝑔∈𝑈 NFP 10_1101-2020_01_28_923532 470 33 𝑥(𝑔 𝑥(𝑔 NNP 10_1101-2020_01_28_923532 470 34 ) ) -RRB- 10_1101-2020_01_28_923532 470 35 ∑ ∑ . 10_1101-2020_01_28_923532 470 36 𝑔∈𝐶 𝑔∈𝐶 NN 10_1101-2020_01_28_923532 470 37 𝑥(𝑔 𝑥(𝑔 NN 10_1101-2020_01_28_923532 470 38 ) ) -RRB- 10_1101-2020_01_28_923532 470 39 ≥ ≥ UH 10_1101-2020_01_28_923532 470 40 1 1 CD 10_1101-2020_01_28_923532 470 41 ∀𝑆𝑖 ∀𝑆𝑖 NN 10_1101-2020_01_28_923532 470 42 ∈ ∈ NNP 10_1101-2020_01_28_923532 470 43 𝑆 𝑆 NN 10_1101-2020_01_28_923532 470 44 ( ( -LRB- 10_1101-2020_01_28_923532 470 45 1 1 CD 10_1101-2020_01_28_923532 470 46 ) ) -RRB- 10_1101-2020_01_28_923532 470 47 In in IN 10_1101-2020_01_28_923532 470 48 this this DT 10_1101-2020_01_28_923532 470 49 formulation formulation NN 10_1101-2020_01_28_923532 470 50 , , , 10_1101-2020_01_28_923532 470 51 there there EX 10_1101-2020_01_28_923532 470 52 is be VBZ 10_1101-2020_01_28_923532 470 53 a a DT 10_1101-2020_01_28_923532 470 54 binary binary JJ 10_1101-2020_01_28_923532 470 55 variable variable JJ 10_1101-2020_01_28_923532 470 56 𝑥(𝑔 𝑥(𝑔 NN 10_1101-2020_01_28_923532 470 57 ) ) -RRB- 10_1101-2020_01_28_923532 470 58 for for IN 10_1101-2020_01_28_923532 470 59 each each DT 10_1101-2020_01_28_923532 470 60 element element NN 10_1101-2020_01_28_923532 470 61 𝑔 𝑔 XX 10_1101-2020_01_28_923532 470 62 ∈ ∈ JJ 10_1101-2020_01_28_923532 470 63 𝑈that 𝑈that NNP 10_1101-2020_01_28_923532 470 64 denotes denote NNS 10_1101-2020_01_28_923532 470 65 whether whether IN 10_1101-2020_01_28_923532 470 66 the the DT 10_1101-2020_01_28_923532 470 67 element element NN 10_1101-2020_01_28_923532 470 68 𝑔 𝑔 NNP 10_1101-2020_01_28_923532 470 69 is be VBZ 10_1101-2020_01_28_923532 470 70 selected select VBN 10_1101-2020_01_28_923532 470 71 or or CC 10_1101-2020_01_28_923532 470 72 not not RB 10_1101-2020_01_28_923532 470 73 . . . 10_1101-2020_01_28_923532 471 1 Constraint constraint NN 10_1101-2020_01_28_923532 471 2 ( ( -LRB- 10_1101-2020_01_28_923532 471 3 1 1 LS 10_1101-2020_01_28_923532 471 4 ) ) -RRB- 10_1101-2020_01_28_923532 471 5 makes make VBZ 10_1101-2020_01_28_923532 471 6 sure sure JJ 10_1101-2020_01_28_923532 471 7 that that IN 10_1101-2020_01_28_923532 471 8 from from IN 10_1101-2020_01_28_923532 471 9 each each DT 10_1101-2020_01_28_923532 471 10 set set VBN 10_1101-2020_01_28_923532 471 11 𝑆𝑖 𝑆𝑖 NNP 10_1101-2020_01_28_923532 471 12 in in IN 10_1101-2020_01_28_923532 471 13 S S NNP 10_1101-2020_01_28_923532 471 14 , , , 10_1101-2020_01_28_923532 471 15 at at RB 10_1101-2020_01_28_923532 471 16 least least RBS 10_1101-2020_01_28_923532 471 17 one one CD 10_1101-2020_01_28_923532 471 18 element element NN 10_1101-2020_01_28_923532 471 19 is be VBZ 10_1101-2020_01_28_923532 471 20 selected select VBN 10_1101-2020_01_28_923532 471 21 . . . 10_1101-2020_01_28_923532 472 1 For for IN 10_1101-2020_01_28_923532 472 2 any any DT 10_1101-2020_01_28_923532 472 3 data datum NNS 10_1101-2020_01_28_923532 472 4 set set NN 10_1101-2020_01_28_923532 472 5 of of IN 10_1101-2020_01_28_923532 472 6 tumor tumor NN 10_1101-2020_01_28_923532 472 7 cells cell NNS 10_1101-2020_01_28_923532 472 8 , , , 10_1101-2020_01_28_923532 472 9 we -PRON- PRP 10_1101-2020_01_28_923532 472 10 begin begin VBP 10_1101-2020_01_28_923532 472 11 with with IN 10_1101-2020_01_28_923532 472 12 the the DT 10_1101-2020_01_28_923532 472 13 model model NN 10_1101-2020_01_28_923532 472 14 that that WDT 10_1101-2020_01_28_923532 472 15 we -PRON- PRP 10_1101-2020_01_28_923532 472 16 specify specify VBP 10_1101-2020_01_28_923532 472 17 a a DT 10_1101-2020_01_28_923532 472 18 set set NN 10_1101-2020_01_28_923532 472 19 of of IN 10_1101-2020_01_28_923532 472 20 genes gene NNS 10_1101-2020_01_28_923532 472 21 that that WDT 10_1101-2020_01_28_923532 472 22 can can MD 10_1101-2020_01_28_923532 472 23 be be VB 10_1101-2020_01_28_923532 472 24 targeted target VBN 10_1101-2020_01_28_923532 472 25 , , , 10_1101-2020_01_28_923532 472 26 and and CC 10_1101-2020_01_28_923532 472 27 that that DT 10_1101-2020_01_28_923532 472 28 is be VBZ 10_1101-2020_01_28_923532 472 29 𝑈. 𝑈. NNP 10_1101-2020_01_28_923532 473 1 Each each DT 10_1101-2020_01_28_923532 473 2 cell cell NN 10_1101-2020_01_28_923532 473 3 is be VBZ 10_1101-2020_01_28_923532 473 4 represented represent VBN 10_1101-2020_01_28_923532 473 5 by by IN 10_1101-2020_01_28_923532 473 6 the the DT 10_1101-2020_01_28_923532 473 7 subset subset NN 10_1101-2020_01_28_923532 473 8 of of IN 10_1101-2020_01_28_923532 473 9 genes gene NNS 10_1101-2020_01_28_923532 473 10 in in IN 10_1101-2020_01_28_923532 473 11 𝑈 𝑈 NN 10_1101-2020_01_28_923532 473 12 whose whose WP$ 10_1101-2020_01_28_923532 473 13 expression expression NN 10_1101-2020_01_28_923532 473 14 is be VBZ 10_1101-2020_01_28_923532 473 15 greater great JJR 10_1101-2020_01_28_923532 473 16 than than IN 10_1101-2020_01_28_923532 473 17 zero zero CD 10_1101-2020_01_28_923532 473 18 . . . 10_1101-2020_01_28_923532 474 1 In in IN 10_1101-2020_01_28_923532 474 2 biological biological JJ 10_1101-2020_01_28_923532 474 3 terms term NNS 10_1101-2020_01_28_923532 474 4 , , , 10_1101-2020_01_28_923532 474 5 a a DT 10_1101-2020_01_28_923532 474 6 cell cell NN 10_1101-2020_01_28_923532 474 7 is be VBZ 10_1101-2020_01_28_923532 474 8 killed kill VBN 10_1101-2020_01_28_923532 474 9 ( ( -LRB- 10_1101-2020_01_28_923532 474 10 hit hit VBN 10_1101-2020_01_28_923532 474 11 ) ) -RRB- 10_1101-2020_01_28_923532 474 12 if if IN 10_1101-2020_01_28_923532 474 13 it -PRON- PRP 10_1101-2020_01_28_923532 474 14 expresses express VBZ 10_1101-2020_01_28_923532 474 15 at at IN 10_1101-2020_01_28_923532 474 16 any any DT 10_1101-2020_01_28_923532 474 17 level level NN 10_1101-2020_01_28_923532 474 18 on on IN 10_1101-2020_01_28_923532 474 19 one one CD 10_1101-2020_01_28_923532 474 20 of of IN 10_1101-2020_01_28_923532 474 21 the the DT 10_1101-2020_01_28_923532 474 22 genes gene NNS 10_1101-2020_01_28_923532 474 23 that that WDT 10_1101-2020_01_28_923532 474 24 is be VBZ 10_1101-2020_01_28_923532 474 25 selected select VBN 10_1101-2020_01_28_923532 474 26 to to TO 10_1101-2020_01_28_923532 474 27 be be VB 10_1101-2020_01_28_923532 474 28 a a DT 10_1101-2020_01_28_923532 474 29 target target NN 10_1101-2020_01_28_923532 474 30 ( ( -LRB- 10_1101-2020_01_28_923532 474 31 i.e. i.e. FW 10_1101-2020_01_28_923532 474 32 , , , 10_1101-2020_01_28_923532 474 33 in in IN 10_1101-2020_01_28_923532 474 34 the the DT 10_1101-2020_01_28_923532 474 35 optimal optimal JJ 10_1101-2020_01_28_923532 474 36 target target NN 10_1101-2020_01_28_923532 474 37 set set VBN 10_1101-2020_01_28_923532 474 38 ) ) -RRB- 10_1101-2020_01_28_923532 474 39 in in IN 10_1101-2020_01_28_923532 474 40 the the DT 10_1101-2020_01_28_923532 474 41 treatment treatment NN 10_1101-2020_01_28_923532 474 42 . . . 10_1101-2020_01_28_923532 475 1 In in IN 10_1101-2020_01_28_923532 475 2 this this DT 10_1101-2020_01_28_923532 475 3 initial initial JJ 10_1101-2020_01_28_923532 475 4 formulation formulation NN 10_1101-2020_01_28_923532 475 5 , , , 10_1101-2020_01_28_923532 475 6 all all DT 10_1101-2020_01_28_923532 475 7 tumor tumor NN 10_1101-2020_01_28_923532 475 8 cells cell NNS 10_1101-2020_01_28_923532 475 9 are be VBP 10_1101-2020_01_28_923532 475 10 combined combine VBN 10_1101-2020_01_28_923532 475 11 as as IN 10_1101-2020_01_28_923532 475 12 if if IN 10_1101-2020_01_28_923532 475 13 they -PRON- PRP 10_1101-2020_01_28_923532 475 14 come come VBP 10_1101-2020_01_28_923532 475 15 from from IN 10_1101-2020_01_28_923532 475 16 one one CD 10_1101-2020_01_28_923532 475 17 patient patient NN 10_1101-2020_01_28_923532 475 18 because because IN 10_1101-2020_01_28_923532 475 19 we -PRON- PRP 10_1101-2020_01_28_923532 475 20 model model VBP 10_1101-2020_01_28_923532 475 21 that that IN 10_1101-2020_01_28_923532 475 22 the the DT 10_1101-2020_01_28_923532 475 23 treatment treatment NN 10_1101-2020_01_28_923532 475 24 goal goal NN 10_1101-2020_01_28_923532 475 25 is be VBZ 10_1101-2020_01_28_923532 475 26 to to TO 10_1101-2020_01_28_923532 475 27 kill kill VB 10_1101-2020_01_28_923532 475 28 ( ( -LRB- 10_1101-2020_01_28_923532 475 29 hit hit VB 10_1101-2020_01_28_923532 475 30 ) ) -RRB- 10_1101-2020_01_28_923532 475 31 all all DT 10_1101-2020_01_28_923532 475 32 tumor tumor NN 10_1101-2020_01_28_923532 475 33 cells cell NNS 10_1101-2020_01_28_923532 475 34 ( ( -LRB- 10_1101-2020_01_28_923532 475 35 all all DT 10_1101-2020_01_28_923532 475 36 subsets subset NNS 10_1101-2020_01_28_923532 475 37 ) ) -RRB- 10_1101-2020_01_28_923532 475 38 . . . 10_1101-2020_01_28_923532 476 1 In in IN 10_1101-2020_01_28_923532 476 2 a a DT 10_1101-2020_01_28_923532 476 3 later later JJ 10_1101-2020_01_28_923532 476 4 subsection subsection NN 10_1101-2020_01_28_923532 476 5 , , , 10_1101-2020_01_28_923532 476 6 we -PRON- PRP 10_1101-2020_01_28_923532 476 7 consider consider VBP 10_1101-2020_01_28_923532 476 8 a a DT 10_1101-2020_01_28_923532 476 9 fair fair JJ 10_1101-2020_01_28_923532 476 10 version version NN 10_1101-2020_01_28_923532 476 11 of of IN 10_1101-2020_01_28_923532 476 12 this this DT 10_1101-2020_01_28_923532 476 13 problem problem NN 10_1101-2020_01_28_923532 476 14 , , , 10_1101-2020_01_28_923532 476 15 taking take VBG 10_1101-2020_01_28_923532 476 16 into into IN 10_1101-2020_01_28_923532 476 17 account account NN 10_1101-2020_01_28_923532 476 18 that that IN 10_1101-2020_01_28_923532 476 19 each each DT 10_1101-2020_01_28_923532 476 20 patient patient NN 10_1101-2020_01_28_923532 476 21 is be VBZ 10_1101-2020_01_28_923532 476 22 part part NN 10_1101-2020_01_28_923532 476 23 of of IN 10_1101-2020_01_28_923532 476 24 a a DT 10_1101-2020_01_28_923532 476 25 cohort cohort NN 10_1101-2020_01_28_923532 476 26 . . . 10_1101-2020_01_28_923532 477 1 Before before IN 10_1101-2020_01_28_923532 477 2 that that DT 10_1101-2020_01_28_923532 477 3 , , , 10_1101-2020_01_28_923532 477 4 we -PRON- PRP 10_1101-2020_01_28_923532 477 5 model model VBP 10_1101-2020_01_28_923532 477 6 the the DT 10_1101-2020_01_28_923532 477 7 oncologist oncologist NN 10_1101-2020_01_28_923532 477 8 ’s ’s POS 10_1101-2020_01_28_923532 477 9 intuition intuition NN 10_1101-2020_01_28_923532 477 10 that that IN 10_1101-2020_01_28_923532 477 11 we -PRON- PRP 10_1101-2020_01_28_923532 477 12 want want VBP 10_1101-2020_01_28_923532 477 13 to to TO 10_1101-2020_01_28_923532 477 14 target target VB 10_1101-2020_01_28_923532 477 15 genes gene NNS 10_1101-2020_01_28_923532 477 16 that that WDT 10_1101-2020_01_28_923532 477 17 are be VBP 10_1101-2020_01_28_923532 477 18 overexpressed overexpresse VBN 10_1101-2020_01_28_923532 477 19 in in IN 10_1101-2020_01_28_923532 477 20 the the DT 10_1101-2020_01_28_923532 477 21 tumor tumor NN 10_1101-2020_01_28_923532 477 22 . . . 10_1101-2020_01_28_923532 478 1 Combining combine VBG 10_1101-2020_01_28_923532 478 2 Data Data NNPS 10_1101-2020_01_28_923532 478 3 on on IN 10_1101-2020_01_28_923532 478 4 Tumor Tumor NNP 10_1101-2020_01_28_923532 478 5 Cells Cells NNPS 10_1101-2020_01_28_923532 478 6 and and CC 10_1101-2020_01_28_923532 478 7 Non non JJ 10_1101-2020_01_28_923532 478 8 - - JJ 10_1101-2020_01_28_923532 478 9 Tumor tumor JJ 10_1101-2020_01_28_923532 478 10 Cells cell NNS 10_1101-2020_01_28_923532 478 11 To to TO 10_1101-2020_01_28_923532 478 12 make make VB 10_1101-2020_01_28_923532 478 13 the the DT 10_1101-2020_01_28_923532 478 14 hitting hit VBG 10_1101-2020_01_28_923532 478 15 set set NN 10_1101-2020_01_28_923532 478 16 formulation formulation NN 10_1101-2020_01_28_923532 478 17 more more RBR 10_1101-2020_01_28_923532 478 18 realistic realistic JJ 10_1101-2020_01_28_923532 478 19 , , , 10_1101-2020_01_28_923532 478 20 we -PRON- PRP 10_1101-2020_01_28_923532 478 21 would would MD 10_1101-2020_01_28_923532 478 22 likely likely RB 10_1101-2020_01_28_923532 478 23 model model VB 10_1101-2020_01_28_923532 478 24 that that IN 10_1101-2020_01_28_923532 478 25 a a DT 10_1101-2020_01_28_923532 478 26 cell cell NN 10_1101-2020_01_28_923532 478 27 ( ( -LRB- 10_1101-2020_01_28_923532 478 28 set set NN 10_1101-2020_01_28_923532 478 29 ) ) -RRB- 10_1101-2020_01_28_923532 478 30 is be VBZ 10_1101-2020_01_28_923532 478 31 killed kill VBN 10_1101-2020_01_28_923532 478 32 ( ( -LRB- 10_1101-2020_01_28_923532 478 33 hit hit VBN 10_1101-2020_01_28_923532 478 34 ) ) -RRB- 10_1101-2020_01_28_923532 478 35 only only RB 10_1101-2020_01_28_923532 478 36 if if IN 10_1101-2020_01_28_923532 478 37 one one CD 10_1101-2020_01_28_923532 478 38 of of IN 10_1101-2020_01_28_923532 478 39 its -PRON- PRP$ 10_1101-2020_01_28_923532 478 40 targets target NNS 10_1101-2020_01_28_923532 478 41 is be VBZ 10_1101-2020_01_28_923532 478 42 overexpressed overexpresse VBN 10_1101-2020_01_28_923532 478 43 compared compare VBN 10_1101-2020_01_28_923532 478 44 to to IN 10_1101-2020_01_28_923532 478 45 typical typical JJ 10_1101-2020_01_28_923532 478 46 expression expression NN 10_1101-2020_01_28_923532 478 47 in in IN 10_1101-2020_01_28_923532 478 48 non- non- NNP 10_1101-2020_01_28_923532 478 49 cancer cancer NN 10_1101-2020_01_28_923532 478 50 cells cell NNS 10_1101-2020_01_28_923532 478 51 . . . 10_1101-2020_01_28_923532 479 1 Such such JJ 10_1101-2020_01_28_923532 479 2 modeling modeling NN 10_1101-2020_01_28_923532 479 3 can can MD 10_1101-2020_01_28_923532 479 4 be be VB 10_1101-2020_01_28_923532 479 5 applied apply VBN 10_1101-2020_01_28_923532 479 6 in in IN 10_1101-2020_01_28_923532 479 7 the the DT 10_1101-2020_01_28_923532 479 8 nine nine CD 10_1101-2020_01_28_923532 479 9 single single JJ 10_1101-2020_01_28_923532 479 10 - - HYPH 10_1101-2020_01_28_923532 479 11 cell cell NN 10_1101-2020_01_28_923532 479 12 data data NN 10_1101-2020_01_28_923532 479 13 sets set NNS 10_1101-2020_01_28_923532 479 14 that that WDT 10_1101-2020_01_28_923532 479 15 have have VBP 10_1101-2020_01_28_923532 479 16 data datum NNS 10_1101-2020_01_28_923532 479 17 on on IN 10_1101-2020_01_28_923532 479 18 non- non- NNP 10_1101-2020_01_28_923532 479 19 cancer cancer NN 10_1101-2020_01_28_923532 479 20 cells cell NNS 10_1101-2020_01_28_923532 479 21 to to TO 10_1101-2020_01_28_923532 479 22 reflect reflect VB 10_1101-2020_01_28_923532 479 23 the the DT 10_1101-2020_01_28_923532 479 24 principle principle NN 10_1101-2020_01_28_923532 479 25 that that IN 10_1101-2020_01_28_923532 479 26 we -PRON- PRP 10_1101-2020_01_28_923532 479 27 would would MD 10_1101-2020_01_28_923532 479 28 like like VB 10_1101-2020_01_28_923532 479 29 the the DT 10_1101-2020_01_28_923532 479 30 treatment treatment NN 10_1101-2020_01_28_923532 479 31 to to TO 10_1101-2020_01_28_923532 479 32 kill kill VB 10_1101-2020_01_28_923532 479 33 the the DT 10_1101-2020_01_28_923532 479 34 tumor tumor NN 10_1101-2020_01_28_923532 479 35 cells cell NNS 10_1101-2020_01_28_923532 479 36 and and CC 10_1101-2020_01_28_923532 479 37 spare spare VB 10_1101-2020_01_28_923532 479 38 the the DT 10_1101-2020_01_28_923532 479 39 non non JJ 10_1101-2020_01_28_923532 479 40 - - JJ 10_1101-2020_01_28_923532 479 41 tumor tumor JJ 10_1101-2020_01_28_923532 479 42 cells cell NNS 10_1101-2020_01_28_923532 479 43 . . . 10_1101-2020_01_28_923532 480 1 Let let VB 10_1101-2020_01_28_923532 480 2 𝑁𝑇 𝑁𝑇 NNP 10_1101-2020_01_28_923532 480 3 be be VB 10_1101-2020_01_28_923532 480 4 the the DT 10_1101-2020_01_28_923532 480 5 set set NN 10_1101-2020_01_28_923532 480 6 of of IN 10_1101-2020_01_28_923532 480 7 non non JJ 10_1101-2020_01_28_923532 480 8 - - JJ 10_1101-2020_01_28_923532 480 9 tumor tumor JJ 10_1101-2020_01_28_923532 480 10 cells cell NNS 10_1101-2020_01_28_923532 480 11 . . . 10_1101-2020_01_28_923532 481 1 For for IN 10_1101-2020_01_28_923532 481 2 each each DT 10_1101-2020_01_28_923532 481 3 gene gene NN 10_1101-2020_01_28_923532 481 4 𝑔 𝑔 NN 10_1101-2020_01_28_923532 481 5 , , , 10_1101-2020_01_28_923532 481 6 define define VB 10_1101-2020_01_28_923532 481 7 its -PRON- PRP$ 10_1101-2020_01_28_923532 481 8 average average JJ 10_1101-2020_01_28_923532 481 9 expression expression NN 10_1101-2020_01_28_923532 481 10 𝐸(𝑔 𝐸(𝑔 NNP 10_1101-2020_01_28_923532 481 11 ) ) -RRB- 10_1101-2020_01_28_923532 481 12 as as IN 10_1101-2020_01_28_923532 481 13 the the DT 10_1101-2020_01_28_923532 481 14 arithmetic arithmetic JJ 10_1101-2020_01_28_923532 481 15 mean mean NN 10_1101-2020_01_28_923532 481 16 among among IN 10_1101-2020_01_28_923532 481 17 all all PDT 10_1101-2020_01_28_923532 481 18 the the DT 10_1101-2020_01_28_923532 481 19 non non JJ 10_1101-2020_01_28_923532 481 20 - - JJ 10_1101-2020_01_28_923532 481 21 zero zero JJ 10_1101-2020_01_28_923532 481 22 values value NNS 10_1101-2020_01_28_923532 481 23 of of IN 10_1101-2020_01_28_923532 481 24 the the DT 10_1101-2020_01_28_923532 481 25 expression expression NN 10_1101-2020_01_28_923532 481 26 level level NN 10_1101-2020_01_28_923532 481 27 of of IN 10_1101-2020_01_28_923532 481 28 𝑔 𝑔 NN 10_1101-2020_01_28_923532 481 29 and and CC 10_1101-2020_01_28_923532 481 30 cells cell NNS 10_1101-2020_01_28_923532 481 31 in in IN 10_1101-2020_01_28_923532 481 32 𝑁𝑇. 𝑁𝑇. CD 10_1101-2020_01_28_923532 482 1 The the DT 10_1101-2020_01_28_923532 482 2 zeroes zero NNS 10_1101-2020_01_28_923532 482 3 are be VBP 10_1101-2020_01_28_923532 482 4 ignored ignore VBN 10_1101-2020_01_28_923532 482 5 because because IN 10_1101-2020_01_28_923532 482 6 many many JJ 10_1101-2020_01_28_923532 482 7 of of IN 10_1101-2020_01_28_923532 482 8 these these DT 10_1101-2020_01_28_923532 482 9 likely likely JJ 10_1101-2020_01_28_923532 482 10 represent represent VBP 10_1101-2020_01_28_923532 482 11 dropouts dropout NNS 10_1101-2020_01_28_923532 482 12 in in IN 10_1101-2020_01_28_923532 482 13 the the DT 10_1101-2020_01_28_923532 482 14 expression expression NN 10_1101-2020_01_28_923532 482 15 measurement measurement NN 10_1101-2020_01_28_923532 482 16 . . . 10_1101-2020_01_28_923532 483 1 Following follow VBG 10_1101-2020_01_28_923532 483 2 the the DT 10_1101-2020_01_28_923532 483 3 design design NN 10_1101-2020_01_28_923532 483 4 of of IN 10_1101-2020_01_28_923532 483 5 experiments experiment NNS 10_1101-2020_01_28_923532 483 6 in in IN 10_1101-2020_01_28_923532 483 7 the the DT 10_1101-2020_01_28_923532 483 8 lab lab NN 10_1101-2020_01_28_923532 483 9 of of IN 10_1101-2020_01_28_923532 483 10 N. N. NNP 10_1101-2020_01_28_923532 483 11 A. A. NNP 10_1101-2020_01_28_923532 483 12 , , , 10_1101-2020_01_28_923532 483 13 we -PRON- PRP 10_1101-2020_01_28_923532 483 14 define define VBP 10_1101-2020_01_28_923532 483 15 an an DT 10_1101-2020_01_28_923532 483 16 expression expression NN 10_1101-2020_01_28_923532 483 17 ratio ratio NN 10_1101-2020_01_28_923532 483 18 threshold threshold NN 10_1101-2020_01_28_923532 483 19 factor factor NN 10_1101-2020_01_28_923532 483 20 𝑟 𝑟 NNP 10_1101-2020_01_28_923532 483 21 whose whose WP$ 10_1101-2020_01_28_923532 483 22 baseline baseline NN 10_1101-2020_01_28_923532 483 23 value value NN 10_1101-2020_01_28_923532 483 24 is be VBZ 10_1101-2020_01_28_923532 483 25 2.0 2.0 CD 10_1101-2020_01_28_923532 483 26 . . . 10_1101-2020_01_28_923532 484 1 We -PRON- PRP 10_1101-2020_01_28_923532 484 2 adjust adjust VBP 10_1101-2020_01_28_923532 484 3 the the DT 10_1101-2020_01_28_923532 484 4 formulation formulation NN 10_1101-2020_01_28_923532 484 5 of of IN 10_1101-2020_01_28_923532 484 6 the the DT 10_1101-2020_01_28_923532 484 7 previous previous JJ 10_1101-2020_01_28_923532 484 8 subsection subsection NN 10_1101-2020_01_28_923532 484 9 , , , 10_1101-2020_01_28_923532 484 10 so so IN 10_1101-2020_01_28_923532 484 11 that that IN 10_1101-2020_01_28_923532 484 12 the the DT 10_1101-2020_01_28_923532 484 13 set set NN 10_1101-2020_01_28_923532 484 14 representing represent VBG 10_1101-2020_01_28_923532 484 15 a a DT 10_1101-2020_01_28_923532 484 16 cell cell NN 10_1101-2020_01_28_923532 484 17 ( ( -LRB- 10_1101-2020_01_28_923532 484 18 in in IN 10_1101-2020_01_28_923532 484 19 the the DT 10_1101-2020_01_28_923532 484 20 tumor tumor NN 10_1101-2020_01_28_923532 484 21 cell cell NN 10_1101-2020_01_28_923532 484 22 set set NN 10_1101-2020_01_28_923532 484 23 ) ) -RRB- 10_1101-2020_01_28_923532 484 24 contains contain VBZ 10_1101-2020_01_28_923532 484 25 only only RB 10_1101-2020_01_28_923532 484 26 those those DT 10_1101-2020_01_28_923532 484 27 genes gene NNS 10_1101-2020_01_28_923532 484 28 𝑔 𝑔 VBP 10_1101-2020_01_28_923532 484 29 such such JJ 10_1101-2020_01_28_923532 484 30 that that IN 10_1101-2020_01_28_923532 484 31 the the DT 10_1101-2020_01_28_923532 484 32 expression expression NN 10_1101-2020_01_28_923532 484 33 of of IN 10_1101-2020_01_28_923532 484 34 𝑔 𝑔 NNP 10_1101-2020_01_28_923532 484 35 is be VBZ 10_1101-2020_01_28_923532 484 36 greater great JJR 10_1101-2020_01_28_923532 484 37 than than IN 10_1101-2020_01_28_923532 484 38 𝑟 𝑟 NN 10_1101-2020_01_28_923532 484 39 × × NN 10_1101-2020_01_28_923532 484 40 𝐸(𝑔 𝐸(𝑔 NNP 10_1101-2020_01_28_923532 484 41 ) ) -RRB- 10_1101-2020_01_28_923532 484 42 instead instead RB 10_1101-2020_01_28_923532 484 43 of of IN 10_1101-2020_01_28_923532 484 44 greater great JJR 10_1101-2020_01_28_923532 484 45 than than IN 10_1101-2020_01_28_923532 484 46 zero zero CD 10_1101-2020_01_28_923532 484 47 . . . 10_1101-2020_01_28_923532 485 1 We -PRON- PRP 10_1101-2020_01_28_923532 485 2 keep keep VBP 10_1101-2020_01_28_923532 485 3 the the DT 10_1101-2020_01_28_923532 485 4 105 105 CD 10_1101-2020_01_28_923532 485 5 and and CC 10_1101-2020_01_28_923532 485 6 is be VBZ 10_1101-2020_01_28_923532 485 7 also also RB 10_1101-2020_01_28_923532 485 8 made make VBN 10_1101-2020_01_28_923532 485 9 available available JJ 10_1101-2020_01_28_923532 485 10 for for IN 10_1101-2020_01_28_923532 485 11 use use NN 10_1101-2020_01_28_923532 485 12 under under IN 10_1101-2020_01_28_923532 485 13 a a DT 10_1101-2020_01_28_923532 485 14 CC0 CC0 NNP 10_1101-2020_01_28_923532 485 15 license license NN 10_1101-2020_01_28_923532 485 16 . . . 10_1101-2020_01_28_923532 486 1 ( ( -LRB- 10_1101-2020_01_28_923532 486 2 which which WDT 10_1101-2020_01_28_923532 486 3 was be VBD 10_1101-2020_01_28_923532 486 4 not not RB 10_1101-2020_01_28_923532 486 5 certified certify VBN 10_1101-2020_01_28_923532 486 6 by by IN 10_1101-2020_01_28_923532 486 7 peer peer NN 10_1101-2020_01_28_923532 486 8 review review NN 10_1101-2020_01_28_923532 486 9 ) ) -RRB- 10_1101-2020_01_28_923532 486 10 is be VBZ 10_1101-2020_01_28_923532 486 11 the the DT 10_1101-2020_01_28_923532 486 12 author author NN 10_1101-2020_01_28_923532 486 13 / / SYM 10_1101-2020_01_28_923532 486 14 funder funder NN 10_1101-2020_01_28_923532 486 15 . . . 10_1101-2020_01_28_923532 487 1 This this DT 10_1101-2020_01_28_923532 487 2 article article NN 10_1101-2020_01_28_923532 487 3 is be VBZ 10_1101-2020_01_28_923532 487 4 a a DT 10_1101-2020_01_28_923532 487 5 US US NNP 10_1101-2020_01_28_923532 487 6 Government Government NNP 10_1101-2020_01_28_923532 487 7 work work NN 10_1101-2020_01_28_923532 487 8 . . . 10_1101-2020_01_28_923532 488 1 It -PRON- PRP 10_1101-2020_01_28_923532 488 2 is be VBZ 10_1101-2020_01_28_923532 488 3 not not RB 10_1101-2020_01_28_923532 488 4 subject subject JJ 10_1101-2020_01_28_923532 488 5 to to IN 10_1101-2020_01_28_923532 488 6 copyright copyright NN 10_1101-2020_01_28_923532 488 7 under under IN 10_1101-2020_01_28_923532 488 8 17 17 CD 10_1101-2020_01_28_923532 488 9 USC usc NN 10_1101-2020_01_28_923532 488 10 The the DT 10_1101-2020_01_28_923532 488 11 copyright copyright NN 10_1101-2020_01_28_923532 488 12 holder holder NN 10_1101-2020_01_28_923532 488 13 for for IN 10_1101-2020_01_28_923532 488 14 this this DT 10_1101-2020_01_28_923532 488 15 preprintthis preprintthis NN 10_1101-2020_01_28_923532 488 16 version version NN 10_1101-2020_01_28_923532 488 17 posted post VBD 10_1101-2020_01_28_923532 488 18 February February NNP 10_1101-2020_01_28_923532 488 19 12 12 CD 10_1101-2020_01_28_923532 488 20 , , , 10_1101-2020_01_28_923532 488 21 2021 2021 CD 10_1101-2020_01_28_923532 488 22 . . . 10_1101-2020_01_28_923532 488 23 ; ; : 10_1101-2020_01_28_923532 488 24 https://doi.org/10.1101/2020.01.28.923532doi https://doi.org/10.1101/2020.01.28.923532doi ADD 10_1101-2020_01_28_923532 488 25 : : : 10_1101-2020_01_28_923532 488 26 bioRxiv biorxiv VB 10_1101-2020_01_28_923532 488 27 preprint preprint NN 10_1101-2020_01_28_923532 488 28 https://doi.org/10.1101/2020.01.28.923532 https://doi.org/10.1101/2020.01.28.923532 UH 10_1101-2020_01_28_923532 488 29 38 38 CD 10_1101-2020_01_28_923532 488 30 objective objective JJ 10_1101-2020_01_28_923532 488 31 function function NN 10_1101-2020_01_28_923532 488 32 limited limit VBN 10_1101-2020_01_28_923532 488 33 to to IN 10_1101-2020_01_28_923532 488 34 the the DT 10_1101-2020_01_28_923532 488 35 tumor tumor NN 10_1101-2020_01_28_923532 488 36 cells cell NNS 10_1101-2020_01_28_923532 488 37 , , , 10_1101-2020_01_28_923532 488 38 but but CC 10_1101-2020_01_28_923532 488 39 we -PRON- PRP 10_1101-2020_01_28_923532 488 40 also also RB 10_1101-2020_01_28_923532 488 41 store store VBP 10_1101-2020_01_28_923532 488 42 a a DT 10_1101-2020_01_28_923532 488 43 set set NN 10_1101-2020_01_28_923532 488 44 to to TO 10_1101-2020_01_28_923532 488 45 represent represent VB 10_1101-2020_01_28_923532 488 46 each each DT 10_1101-2020_01_28_923532 488 47 non non JJ 10_1101-2020_01_28_923532 488 48 - - JJ 10_1101-2020_01_28_923532 488 49 tumor tumor JJ 10_1101-2020_01_28_923532 488 50 cell cell NN 10_1101-2020_01_28_923532 488 51 , , , 10_1101-2020_01_28_923532 488 52 and and CC 10_1101-2020_01_28_923532 488 53 we -PRON- PRP 10_1101-2020_01_28_923532 488 54 tabulate tabulate VBP 10_1101-2020_01_28_923532 488 55 which which WDT 10_1101-2020_01_28_923532 488 56 non non JJ 10_1101-2020_01_28_923532 488 57 - - JJ 10_1101-2020_01_28_923532 488 58 tumor tumor JJ 10_1101-2020_01_28_923532 488 59 cells cell NNS 10_1101-2020_01_28_923532 488 60 ( ( -LRB- 10_1101-2020_01_28_923532 488 61 sets set NNS 10_1101-2020_01_28_923532 488 62 ) ) -RRB- 10_1101-2020_01_28_923532 488 63 would would MD 10_1101-2020_01_28_923532 488 64 be be VB 10_1101-2020_01_28_923532 488 65 killed kill VBN 10_1101-2020_01_28_923532 488 66 ( ( -LRB- 10_1101-2020_01_28_923532 488 67 hit hit VBN 10_1101-2020_01_28_923532 488 68 ) ) -RRB- 10_1101-2020_01_28_923532 488 69 because because IN 10_1101-2020_01_28_923532 488 70 for for IN 10_1101-2020_01_28_923532 488 71 at at RB 10_1101-2020_01_28_923532 488 72 least least RBS 10_1101-2020_01_28_923532 488 73 one one CD 10_1101-2020_01_28_923532 488 74 of of IN 10_1101-2020_01_28_923532 488 75 the the DT 10_1101-2020_01_28_923532 488 76 genes gene NNS 10_1101-2020_01_28_923532 488 77 in in IN 10_1101-2020_01_28_923532 488 78 the the DT 10_1101-2020_01_28_923532 488 79 optimal optimal JJ 10_1101-2020_01_28_923532 488 80 target target NN 10_1101-2020_01_28_923532 488 81 set set VBN 10_1101-2020_01_28_923532 488 82 , , , 10_1101-2020_01_28_923532 488 83 the the DT 10_1101-2020_01_28_923532 488 84 expression expression NN 10_1101-2020_01_28_923532 488 85 of of IN 10_1101-2020_01_28_923532 488 86 that that DT 10_1101-2020_01_28_923532 488 87 gene gene NN 10_1101-2020_01_28_923532 488 88 in in IN 10_1101-2020_01_28_923532 488 89 that that DT 10_1101-2020_01_28_923532 488 90 non non JJ 10_1101-2020_01_28_923532 488 91 - - JJ 10_1101-2020_01_28_923532 488 92 tumor tumor JJ 10_1101-2020_01_28_923532 488 93 cell cell NN 10_1101-2020_01_28_923532 488 94 exceeds exceed VBZ 10_1101-2020_01_28_923532 488 95 the the DT 10_1101-2020_01_28_923532 488 96 threshold threshold NN 10_1101-2020_01_28_923532 488 97 𝑟 𝑟 NNP 10_1101-2020_01_28_923532 488 98 × × NNP 10_1101-2020_01_28_923532 488 99 𝐸(𝑔 𝐸(𝑔 NNP 10_1101-2020_01_28_923532 488 100 ) ) -RRB- 10_1101-2020_01_28_923532 488 101 . . . 10_1101-2020_01_28_923532 489 1 We -PRON- PRP 10_1101-2020_01_28_923532 489 2 add add VBP 10_1101-2020_01_28_923532 489 3 parameters parameter NNS 10_1101-2020_01_28_923532 489 4 𝑙𝑏 𝑙𝑏 VBP 10_1101-2020_01_28_923532 489 5 and and CC 10_1101-2020_01_28_923532 489 6 𝑢𝑏 𝑢𝑏 VB 10_1101-2020_01_28_923532 489 7 each each DT 10_1101-2020_01_28_923532 489 8 in in IN 10_1101-2020_01_28_923532 489 9 the the DT 10_1101-2020_01_28_923532 489 10 range range NN 10_1101-2020_01_28_923532 489 11 [ [ -LRB- 10_1101-2020_01_28_923532 489 12 0,1 0,1 NFP 10_1101-2020_01_28_923532 489 13 ] ] -RRB- 10_1101-2020_01_28_923532 489 14 and and CC 10_1101-2020_01_28_923532 489 15 representing represent VBG 10_1101-2020_01_28_923532 489 16 respectively respectively RB 10_1101-2020_01_28_923532 489 17 a a DT 10_1101-2020_01_28_923532 489 18 lower low JJR 10_1101-2020_01_28_923532 489 19 bound bind VBN 10_1101-2020_01_28_923532 489 20 on on IN 10_1101-2020_01_28_923532 489 21 the the DT 10_1101-2020_01_28_923532 489 22 proportion proportion NN 10_1101-2020_01_28_923532 489 23 of of IN 10_1101-2020_01_28_923532 489 24 tumor tumor NN 10_1101-2020_01_28_923532 489 25 cells cell NNS 10_1101-2020_01_28_923532 489 26 killed kill VBN 10_1101-2020_01_28_923532 489 27 and and CC 10_1101-2020_01_28_923532 489 28 an an DT 10_1101-2020_01_28_923532 489 29 upper upper JJ 10_1101-2020_01_28_923532 489 30 bound bind VBN 10_1101-2020_01_28_923532 489 31 on on IN 10_1101-2020_01_28_923532 489 32 the the DT 10_1101-2020_01_28_923532 489 33 proportion proportion NN 10_1101-2020_01_28_923532 489 34 of of IN 10_1101-2020_01_28_923532 489 35 non non JJ 10_1101-2020_01_28_923532 489 36 - - JJ 10_1101-2020_01_28_923532 489 37 tumor tumor JJ 10_1101-2020_01_28_923532 489 38 cells cell NNS 10_1101-2020_01_28_923532 489 39 killed kill VBN 10_1101-2020_01_28_923532 489 40 . . . 10_1101-2020_01_28_923532 490 1 The the DT 10_1101-2020_01_28_923532 490 2 parameters parameter NNS 10_1101-2020_01_28_923532 490 3 𝑙𝑏 𝑙𝑏 VBP 10_1101-2020_01_28_923532 490 4 , , , 10_1101-2020_01_28_923532 490 5 ub ub PRP 10_1101-2020_01_28_923532 490 6 are be VBP 10_1101-2020_01_28_923532 490 7 used use VBN 10_1101-2020_01_28_923532 490 8 only only RB 10_1101-2020_01_28_923532 490 9 in in IN 10_1101-2020_01_28_923532 490 10 two two CD 10_1101-2020_01_28_923532 490 11 constraints constraint NNS 10_1101-2020_01_28_923532 490 12 , , , 10_1101-2020_01_28_923532 490 13 and and CC 10_1101-2020_01_28_923532 490 14 we -PRON- PRP 10_1101-2020_01_28_923532 490 15 do do VBP 10_1101-2020_01_28_923532 490 16 not not RB 10_1101-2020_01_28_923532 490 17 favor favor VB 10_1101-2020_01_28_923532 490 18 optimal optimal JJ 10_1101-2020_01_28_923532 490 19 solutions solution NNS 10_1101-2020_01_28_923532 490 20 that that WDT 10_1101-2020_01_28_923532 490 21 kill kill VBP 10_1101-2020_01_28_923532 490 22 more more JJR 10_1101-2020_01_28_923532 490 23 tumor tumor NN 10_1101-2020_01_28_923532 490 24 cells cell NNS 10_1101-2020_01_28_923532 490 25 or or CC 10_1101-2020_01_28_923532 490 26 fewer few JJR 10_1101-2020_01_28_923532 490 27 non non JJ 10_1101-2020_01_28_923532 490 28 - - JJ 10_1101-2020_01_28_923532 490 29 tumor tumor JJ 10_1101-2020_01_28_923532 490 30 cells cell NNS 10_1101-2020_01_28_923532 490 31 , , , 10_1101-2020_01_28_923532 490 32 so so RB 10_1101-2020_01_28_923532 490 33 long long RB 10_1101-2020_01_28_923532 490 34 as as IN 10_1101-2020_01_28_923532 490 35 the the DT 10_1101-2020_01_28_923532 490 36 solutions solution NNS 10_1101-2020_01_28_923532 490 37 obey obey VBP 10_1101-2020_01_28_923532 490 38 the the DT 10_1101-2020_01_28_923532 490 39 constraints constraint NNS 10_1101-2020_01_28_923532 490 40 . . . 10_1101-2020_01_28_923532 491 1 The the DT 10_1101-2020_01_28_923532 491 2 Fair Fair NNP 10_1101-2020_01_28_923532 491 3 Cohort Cohort NNP 10_1101-2020_01_28_923532 491 4 Target Target NNP 10_1101-2020_01_28_923532 491 5 Set Set VBD 10_1101-2020_01_28_923532 491 6 Problem problem NN 10_1101-2020_01_28_923532 491 7 for for IN 10_1101-2020_01_28_923532 491 8 a a DT 10_1101-2020_01_28_923532 491 9 Multi multi JJ 10_1101-2020_01_28_923532 491 10 - - JJ 10_1101-2020_01_28_923532 491 11 Patient patient JJ 10_1101-2020_01_28_923532 491 12 Cohort Cohort NNP 10_1101-2020_01_28_923532 491 13 We -PRON- PRP 10_1101-2020_01_28_923532 491 14 want want VBP 10_1101-2020_01_28_923532 491 15 to to TO 10_1101-2020_01_28_923532 491 16 formulate formulate VB 10_1101-2020_01_28_923532 491 17 an an DT 10_1101-2020_01_28_923532 491 18 integer integer NN 10_1101-2020_01_28_923532 491 19 linear linear NN 10_1101-2020_01_28_923532 491 20 program program NN 10_1101-2020_01_28_923532 491 21 that that WDT 10_1101-2020_01_28_923532 491 22 selects select VBZ 10_1101-2020_01_28_923532 491 23 a a DT 10_1101-2020_01_28_923532 491 24 set set NN 10_1101-2020_01_28_923532 491 25 of of IN 10_1101-2020_01_28_923532 491 26 genes gene NNS 10_1101-2020_01_28_923532 491 27 𝑆∗ 𝑆∗ NNS 10_1101-2020_01_28_923532 491 28 from from IN 10_1101-2020_01_28_923532 491 29 available available JJ 10_1101-2020_01_28_923532 491 30 genes gene NNS 10_1101-2020_01_28_923532 491 31 in in IN 10_1101-2020_01_28_923532 491 32 such such PDT 10_1101-2020_01_28_923532 491 33 a a DT 10_1101-2020_01_28_923532 491 34 way way NN 10_1101-2020_01_28_923532 491 35 that that IN 10_1101-2020_01_28_923532 491 36 , , , 10_1101-2020_01_28_923532 491 37 for for IN 10_1101-2020_01_28_923532 491 38 each each DT 10_1101-2020_01_28_923532 491 39 patient patient NN 10_1101-2020_01_28_923532 491 40 , , , 10_1101-2020_01_28_923532 491 41 there there EX 10_1101-2020_01_28_923532 491 42 exists exist VBZ 10_1101-2020_01_28_923532 491 43 an an DT 10_1101-2020_01_28_923532 491 44 individual individual JJ 10_1101-2020_01_28_923532 491 45 target target NN 10_1101-2020_01_28_923532 491 46 set set VBN 10_1101-2020_01_28_923532 491 47 𝐻𝑖 𝐻𝑖 NNP 10_1101-2020_01_28_923532 491 48 𝑆∗ 𝑆∗ ADD 10_1101-2020_01_28_923532 491 49 ⊆ ⊆ : 10_1101-2020_01_28_923532 491 50 𝑆∗of 𝑆∗of PRP 10_1101-2020_01_28_923532 491 51 a a DT 10_1101-2020_01_28_923532 491 52 relative relative JJ 10_1101-2020_01_28_923532 491 53 small small JJ 10_1101-2020_01_28_923532 491 54 size size NN 10_1101-2020_01_28_923532 491 55 ( ( -LRB- 10_1101-2020_01_28_923532 491 56 compared compare VBN 10_1101-2020_01_28_923532 491 57 to to IN 10_1101-2020_01_28_923532 491 58 the the DT 10_1101-2020_01_28_923532 491 59 optimal optimal JJ 10_1101-2020_01_28_923532 491 60 ITS ITS NNP 10_1101-2020_01_28_923532 491 61 of of IN 10_1101-2020_01_28_923532 491 62 that that DT 10_1101-2020_01_28_923532 491 63 patient patient NN 10_1101-2020_01_28_923532 491 64 alone alone RB 10_1101-2020_01_28_923532 491 65 which which WDT 10_1101-2020_01_28_923532 491 66 is be VBZ 10_1101-2020_01_28_923532 491 67 denoted denote VBN 10_1101-2020_01_28_923532 491 68 by by IN 10_1101-2020_01_28_923532 491 69 𝐻(𝑖 𝐻(𝑖 CD 10_1101-2020_01_28_923532 491 70 ) ) -RRB- 10_1101-2020_01_28_923532 491 71 ) ) -RRB- 10_1101-2020_01_28_923532 491 72 . . . 10_1101-2020_01_28_923532 492 1 Let let VB 10_1101-2020_01_28_923532 492 2 U u PRP 10_1101-2020_01_28_923532 492 3 = = NFP 10_1101-2020_01_28_923532 492 4 { { -LRB- 10_1101-2020_01_28_923532 492 5 g1 g1 NN 10_1101-2020_01_28_923532 492 6 , , , 10_1101-2020_01_28_923532 492 7 g2 g2 NNP 10_1101-2020_01_28_923532 492 8 , , , 10_1101-2020_01_28_923532 492 9 ... ... : 10_1101-2020_01_28_923532 492 10 , , , 10_1101-2020_01_28_923532 492 11 g|U| g|U| NNP 10_1101-2020_01_28_923532 492 12 } } -RRB- 10_1101-2020_01_28_923532 492 13 be be VB 10_1101-2020_01_28_923532 492 14 the the DT 10_1101-2020_01_28_923532 492 15 set set NN 10_1101-2020_01_28_923532 492 16 of of IN 10_1101-2020_01_28_923532 492 17 genes gene NNS 10_1101-2020_01_28_923532 492 18 . . . 10_1101-2020_01_28_923532 493 1 There there EX 10_1101-2020_01_28_923532 493 2 are be VBP 10_1101-2020_01_28_923532 493 3 𝑛 𝑛 NN 10_1101-2020_01_28_923532 493 4 patients patient NNS 10_1101-2020_01_28_923532 493 5 . . . 10_1101-2020_01_28_923532 494 1 For for IN 10_1101-2020_01_28_923532 494 2 the the DT 10_1101-2020_01_28_923532 494 3 i i PRP 10_1101-2020_01_28_923532 494 4 th th XX 10_1101-2020_01_28_923532 494 5 patient patient NN 10_1101-2020_01_28_923532 494 6 , , , 10_1101-2020_01_28_923532 494 7 we -PRON- PRP 10_1101-2020_01_28_923532 494 8 denote denote VBP 10_1101-2020_01_28_923532 494 9 by by IN 10_1101-2020_01_28_923532 494 10 𝑆𝑃(𝑖 𝑆𝑃(𝑖 NNP 10_1101-2020_01_28_923532 494 11 ) ) -RRB- 10_1101-2020_01_28_923532 494 12 , , , 10_1101-2020_01_28_923532 494 13 the the DT 10_1101-2020_01_28_923532 494 14 set set NN 10_1101-2020_01_28_923532 494 15 of of IN 10_1101-2020_01_28_923532 494 16 tumor tumor NN 10_1101-2020_01_28_923532 494 17 cells cell NNS 10_1101-2020_01_28_923532 494 18 related relate VBN 10_1101-2020_01_28_923532 494 19 to to IN 10_1101-2020_01_28_923532 494 20 patient patient NN 10_1101-2020_01_28_923532 494 21 i. i. NNP 10_1101-2020_01_28_923532 495 1 For for IN 10_1101-2020_01_28_923532 495 2 each each DT 10_1101-2020_01_28_923532 495 3 tumor tumor NN 10_1101-2020_01_28_923532 495 4 cell cell NN 10_1101-2020_01_28_923532 495 5 𝐶 𝐶 NNP 10_1101-2020_01_28_923532 495 6 ∈ ∈ NNP 10_1101-2020_01_28_923532 495 7 𝑆𝑃(𝑖 𝑆𝑃(𝑖 NN 10_1101-2020_01_28_923532 495 8 ) ) -RRB- 10_1101-2020_01_28_923532 495 9 , , , 10_1101-2020_01_28_923532 495 10 we -PRON- PRP 10_1101-2020_01_28_923532 495 11 describe describe VBP 10_1101-2020_01_28_923532 495 12 it -PRON- PRP 10_1101-2020_01_28_923532 495 13 as as IN 10_1101-2020_01_28_923532 495 14 a a DT 10_1101-2020_01_28_923532 495 15 set set NN 10_1101-2020_01_28_923532 495 16 of of IN 10_1101-2020_01_28_923532 495 17 genes gene NNS 10_1101-2020_01_28_923532 495 18 which which WDT 10_1101-2020_01_28_923532 495 19 is be VBZ 10_1101-2020_01_28_923532 495 20 known know VBN 10_1101-2020_01_28_923532 495 21 to to TO 10_1101-2020_01_28_923532 495 22 be be VB 10_1101-2020_01_28_923532 495 23 targetable targetable JJ 10_1101-2020_01_28_923532 495 24 to to TO 10_1101-2020_01_28_923532 495 25 cell cell NN 10_1101-2020_01_28_923532 495 26 𝐶. 𝐶. NNP 10_1101-2020_01_28_923532 496 1 That that RB 10_1101-2020_01_28_923532 496 2 is is RB 10_1101-2020_01_28_923532 496 3 , , , 10_1101-2020_01_28_923532 496 4 𝑔 𝑔 NNP 10_1101-2020_01_28_923532 496 5 ∈ ∈ NNP 10_1101-2020_01_28_923532 496 6 𝐶 𝐶 NNP 10_1101-2020_01_28_923532 496 7 if if IN 10_1101-2020_01_28_923532 496 8 and and CC 10_1101-2020_01_28_923532 496 9 only only RB 10_1101-2020_01_28_923532 496 10 if if IN 10_1101-2020_01_28_923532 496 11 a a DT 10_1101-2020_01_28_923532 496 12 drug drug NN 10_1101-2020_01_28_923532 496 13 containing contain VBG 10_1101-2020_01_28_923532 496 14 𝑔 𝑔 NNP 10_1101-2020_01_28_923532 496 15 can can MD 10_1101-2020_01_28_923532 496 16 target target VB 10_1101-2020_01_28_923532 496 17 the the DT 10_1101-2020_01_28_923532 496 18 cell cell NN 10_1101-2020_01_28_923532 496 19 𝐶. 𝐶. NN 10_1101-2020_01_28_923532 497 1 In in IN 10_1101-2020_01_28_923532 497 2 the the DT 10_1101-2020_01_28_923532 497 3 ILP ILP NNP 10_1101-2020_01_28_923532 497 4 , , , 10_1101-2020_01_28_923532 497 5 there there EX 10_1101-2020_01_28_923532 497 6 is be VBZ 10_1101-2020_01_28_923532 497 7 a a DT 10_1101-2020_01_28_923532 497 8 variable variable JJ 10_1101-2020_01_28_923532 497 9 𝑥(𝑔 𝑥(𝑔 NN 10_1101-2020_01_28_923532 497 10 ) ) -RRB- 10_1101-2020_01_28_923532 497 11 corresponding correspond VBG 10_1101-2020_01_28_923532 497 12 to to IN 10_1101-2020_01_28_923532 497 13 each each DT 10_1101-2020_01_28_923532 497 14 gene gene NN 10_1101-2020_01_28_923532 497 15 𝑔 𝑔 NNP 10_1101-2020_01_28_923532 497 16 ∈ ∈ NNP 10_1101-2020_01_28_923532 497 17 𝑈 𝑈 NN 10_1101-2020_01_28_923532 497 18 that that WDT 10_1101-2020_01_28_923532 497 19 shows show VBZ 10_1101-2020_01_28_923532 497 20 whether whether IN 10_1101-2020_01_28_923532 497 21 the the DT 10_1101-2020_01_28_923532 497 22 gene gene NN 10_1101-2020_01_28_923532 497 23 g g NN 10_1101-2020_01_28_923532 497 24 is be VBZ 10_1101-2020_01_28_923532 497 25 selected select VBN 10_1101-2020_01_28_923532 497 26 or or CC 10_1101-2020_01_28_923532 497 27 not not RB 10_1101-2020_01_28_923532 497 28 . . . 10_1101-2020_01_28_923532 498 1 There there EX 10_1101-2020_01_28_923532 498 2 is be VBZ 10_1101-2020_01_28_923532 498 3 a a DT 10_1101-2020_01_28_923532 498 4 variable variable JJ 10_1101-2020_01_28_923532 498 5 𝑥(𝑔 𝑥(𝑔 NN 10_1101-2020_01_28_923532 498 6 , , , 10_1101-2020_01_28_923532 498 7 𝑃(𝑖 𝑃(𝑖 CD 10_1101-2020_01_28_923532 498 8 ) ) -RRB- 10_1101-2020_01_28_923532 498 9 ) ) -RRB- 10_1101-2020_01_28_923532 498 10 which which WDT 10_1101-2020_01_28_923532 498 11 shows show VBZ 10_1101-2020_01_28_923532 498 12 whether whether IN 10_1101-2020_01_28_923532 498 13 a a DT 10_1101-2020_01_28_923532 498 14 gene gene NN 10_1101-2020_01_28_923532 498 15 g g NN 10_1101-2020_01_28_923532 498 16 is be VBZ 10_1101-2020_01_28_923532 498 17 selected select VBN 10_1101-2020_01_28_923532 498 18 in in IN 10_1101-2020_01_28_923532 498 19 the the DT 10_1101-2020_01_28_923532 498 20 target target NN 10_1101-2020_01_28_923532 498 21 set set VBN 10_1101-2020_01_28_923532 498 22 of of IN 10_1101-2020_01_28_923532 498 23 patient patient JJ 10_1101-2020_01_28_923532 498 24 𝑃(𝑖 𝑃(𝑖 NNP 10_1101-2020_01_28_923532 498 25 ) ) -RRB- 10_1101-2020_01_28_923532 498 26 . . . 10_1101-2020_01_28_923532 499 1 The the DT 10_1101-2020_01_28_923532 499 2 objective objective JJ 10_1101-2020_01_28_923532 499 3 function function NN 10_1101-2020_01_28_923532 499 4 is be VBZ 10_1101-2020_01_28_923532 499 5 to to TO 10_1101-2020_01_28_923532 499 6 minimize minimize VB 10_1101-2020_01_28_923532 499 7 the the DT 10_1101-2020_01_28_923532 499 8 total total JJ 10_1101-2020_01_28_923532 499 9 number number NN 10_1101-2020_01_28_923532 499 10 of of IN 10_1101-2020_01_28_923532 499 11 genes gene NNS 10_1101-2020_01_28_923532 499 12 selected select VBN 10_1101-2020_01_28_923532 499 13 , , , 10_1101-2020_01_28_923532 499 14 subject subject JJ 10_1101-2020_01_28_923532 499 15 to to IN 10_1101-2020_01_28_923532 499 16 having have VBG 10_1101-2020_01_28_923532 499 17 a a DT 10_1101-2020_01_28_923532 499 18 target target NN 10_1101-2020_01_28_923532 499 19 set set VBN 10_1101-2020_01_28_923532 499 20 of of IN 10_1101-2020_01_28_923532 499 21 size size NN 10_1101-2020_01_28_923532 499 22 at at IN 10_1101-2020_01_28_923532 499 23 most most JJS 10_1101-2020_01_28_923532 499 24 𝐻(𝑖 𝐻(𝑖 CD 10_1101-2020_01_28_923532 499 25 ) ) -RRB- 10_1101-2020_01_28_923532 499 26 + + CC 10_1101-2020_01_28_923532 499 27 𝛼 𝛼 NN 10_1101-2020_01_28_923532 499 28 for for IN 10_1101-2020_01_28_923532 499 29 patient patient NNP 10_1101-2020_01_28_923532 499 30 𝑃(𝑖 𝑃(𝑖 NNP 10_1101-2020_01_28_923532 499 31 ) ) -RRB- 10_1101-2020_01_28_923532 499 32 where where WRB 10_1101-2020_01_28_923532 499 33 1 1 CD 10_1101-2020_01_28_923532 499 34 ≤ ≤ NNP 10_1101-2020_01_28_923532 499 35 𝑖 𝑖 NNP 10_1101-2020_01_28_923532 499 36 ≤ ≤ NN 10_1101-2020_01_28_923532 499 37 𝑛. 𝑛. NNP 10_1101-2020_01_28_923532 499 38 Constraint Constraint NNP 10_1101-2020_01_28_923532 499 39 ( ( -LRB- 10_1101-2020_01_28_923532 499 40 3 3 LS 10_1101-2020_01_28_923532 499 41 ) ) -RRB- 10_1101-2020_01_28_923532 499 42 ensures ensure VBZ 10_1101-2020_01_28_923532 499 43 that that IN 10_1101-2020_01_28_923532 499 44 , , , 10_1101-2020_01_28_923532 499 45 for for IN 10_1101-2020_01_28_923532 499 46 patient patient JJ 10_1101-2020_01_28_923532 499 47 𝑃(𝑖),we 𝑃(𝑖),we NNP 10_1101-2020_01_28_923532 499 48 do do VBP 10_1101-2020_01_28_923532 499 49 not not RB 10_1101-2020_01_28_923532 499 50 select select VB 10_1101-2020_01_28_923532 499 51 any any DT 10_1101-2020_01_28_923532 499 52 gene gene NN 10_1101-2020_01_28_923532 499 53 𝑔 𝑔 NN 10_1101-2020_01_28_923532 499 54 that that WDT 10_1101-2020_01_28_923532 499 55 are be VBP 10_1101-2020_01_28_923532 499 56 not not RB 10_1101-2020_01_28_923532 499 57 selected select VBN 10_1101-2020_01_28_923532 499 58 in in IN 10_1101-2020_01_28_923532 499 59 the the DT 10_1101-2020_01_28_923532 499 60 global global JJ 10_1101-2020_01_28_923532 499 61 set set NN 10_1101-2020_01_28_923532 499 62 . . . 10_1101-2020_01_28_923532 500 1 Constraint constraint NN 10_1101-2020_01_28_923532 500 2 ( ( -LRB- 10_1101-2020_01_28_923532 500 3 4 4 CD 10_1101-2020_01_28_923532 500 4 ) ) -RRB- 10_1101-2020_01_28_923532 500 5 ensures ensure VBZ 10_1101-2020_01_28_923532 500 6 all all PDT 10_1101-2020_01_28_923532 500 7 the the DT 10_1101-2020_01_28_923532 500 8 sets set NNS 10_1101-2020_01_28_923532 500 9 corresponding correspond VBG 10_1101-2020_01_28_923532 500 10 to to IN 10_1101-2020_01_28_923532 500 11 tumor tumor NN 10_1101-2020_01_28_923532 500 12 cells cell NNS 10_1101-2020_01_28_923532 500 13 of of IN 10_1101-2020_01_28_923532 500 14 patient patient JJ 10_1101-2020_01_28_923532 500 15 𝑃(𝑖 𝑃(𝑖 NNP 10_1101-2020_01_28_923532 500 16 ) ) -RRB- 10_1101-2020_01_28_923532 500 17 are be VBP 10_1101-2020_01_28_923532 500 18 hit hit VBN 10_1101-2020_01_28_923532 500 19 . . . 10_1101-2020_01_28_923532 501 1 𝑚𝑖𝑛 𝑚𝑖𝑛 NNP 10_1101-2020_01_28_923532 501 2 ∑ ∑ XX 10_1101-2020_01_28_923532 501 3 𝑔∈𝑈 𝑔∈𝑈 NNP 10_1101-2020_01_28_923532 501 4 𝑥(𝑔 𝑥(𝑔 NNP 10_1101-2020_01_28_923532 501 5 ) ) -RRB- 10_1101-2020_01_28_923532 501 6 ( ( -LRB- 10_1101-2020_01_28_923532 501 7 1 1 CD 10_1101-2020_01_28_923532 501 8 ) ) -RRB- 10_1101-2020_01_28_923532 501 9 ∑ ∑ . 10_1101-2020_01_28_923532 501 10 𝑔∈𝑆𝑃(𝑖 𝑔∈𝑆𝑃(𝑖 NN 10_1101-2020_01_28_923532 501 11 ) ) -RRB- 10_1101-2020_01_28_923532 501 12 𝑥(𝑔 𝑥(𝑔 NNP 10_1101-2020_01_28_923532 501 13 , , , 10_1101-2020_01_28_923532 501 14 𝑃(𝑖 𝑃(𝑖 CD 10_1101-2020_01_28_923532 501 15 ) ) -RRB- 10_1101-2020_01_28_923532 501 16 ) ) -RRB- 10_1101-2020_01_28_923532 501 17 ≤ ≤ NNP 10_1101-2020_01_28_923532 501 18 𝐻(𝑖 𝐻(𝑖 CD 10_1101-2020_01_28_923532 501 19 ) ) -RRB- 10_1101-2020_01_28_923532 501 20 + + CC 10_1101-2020_01_28_923532 501 21 𝛼 𝛼 NN 10_1101-2020_01_28_923532 501 22 ∀𝑖 ∀𝑖 NNP 10_1101-2020_01_28_923532 501 23 ( ( -LRB- 10_1101-2020_01_28_923532 501 24 2 2 CD 10_1101-2020_01_28_923532 501 25 ) ) -RRB- 10_1101-2020_01_28_923532 501 26 105 105 CD 10_1101-2020_01_28_923532 501 27 and and CC 10_1101-2020_01_28_923532 501 28 is be VBZ 10_1101-2020_01_28_923532 501 29 also also RB 10_1101-2020_01_28_923532 501 30 made make VBN 10_1101-2020_01_28_923532 501 31 available available JJ 10_1101-2020_01_28_923532 501 32 for for IN 10_1101-2020_01_28_923532 501 33 use use NN 10_1101-2020_01_28_923532 501 34 under under IN 10_1101-2020_01_28_923532 501 35 a a DT 10_1101-2020_01_28_923532 501 36 CC0 CC0 NNP 10_1101-2020_01_28_923532 501 37 license license NN 10_1101-2020_01_28_923532 501 38 . . . 10_1101-2020_01_28_923532 502 1 ( ( -LRB- 10_1101-2020_01_28_923532 502 2 which which WDT 10_1101-2020_01_28_923532 502 3 was be VBD 10_1101-2020_01_28_923532 502 4 not not RB 10_1101-2020_01_28_923532 502 5 certified certify VBN 10_1101-2020_01_28_923532 502 6 by by IN 10_1101-2020_01_28_923532 502 7 peer peer NN 10_1101-2020_01_28_923532 502 8 review review NN 10_1101-2020_01_28_923532 502 9 ) ) -RRB- 10_1101-2020_01_28_923532 502 10 is be VBZ 10_1101-2020_01_28_923532 502 11 the the DT 10_1101-2020_01_28_923532 502 12 author author NN 10_1101-2020_01_28_923532 502 13 / / SYM 10_1101-2020_01_28_923532 502 14 funder funder NN 10_1101-2020_01_28_923532 502 15 . . . 10_1101-2020_01_28_923532 503 1 This this DT 10_1101-2020_01_28_923532 503 2 article article NN 10_1101-2020_01_28_923532 503 3 is be VBZ 10_1101-2020_01_28_923532 503 4 a a DT 10_1101-2020_01_28_923532 503 5 US US NNP 10_1101-2020_01_28_923532 503 6 Government Government NNP 10_1101-2020_01_28_923532 503 7 work work NN 10_1101-2020_01_28_923532 503 8 . . . 10_1101-2020_01_28_923532 504 1 It -PRON- PRP 10_1101-2020_01_28_923532 504 2 is be VBZ 10_1101-2020_01_28_923532 504 3 not not RB 10_1101-2020_01_28_923532 504 4 subject subject JJ 10_1101-2020_01_28_923532 504 5 to to IN 10_1101-2020_01_28_923532 504 6 copyright copyright NN 10_1101-2020_01_28_923532 504 7 under under IN 10_1101-2020_01_28_923532 504 8 17 17 CD 10_1101-2020_01_28_923532 504 9 USC usc NN 10_1101-2020_01_28_923532 504 10 The the DT 10_1101-2020_01_28_923532 504 11 copyright copyright NN 10_1101-2020_01_28_923532 504 12 holder holder NN 10_1101-2020_01_28_923532 504 13 for for IN 10_1101-2020_01_28_923532 504 14 this this DT 10_1101-2020_01_28_923532 504 15 preprintthis preprintthis NN 10_1101-2020_01_28_923532 504 16 version version NN 10_1101-2020_01_28_923532 504 17 posted post VBD 10_1101-2020_01_28_923532 504 18 February February NNP 10_1101-2020_01_28_923532 504 19 12 12 CD 10_1101-2020_01_28_923532 504 20 , , , 10_1101-2020_01_28_923532 504 21 2021 2021 CD 10_1101-2020_01_28_923532 504 22 . . . 10_1101-2020_01_28_923532 504 23 ; ; : 10_1101-2020_01_28_923532 504 24 https://doi.org/10.1101/2020.01.28.923532doi https://doi.org/10.1101/2020.01.28.923532doi ADD 10_1101-2020_01_28_923532 504 25 : : : 10_1101-2020_01_28_923532 504 26 bioRxiv biorxiv VB 10_1101-2020_01_28_923532 504 27 preprint preprint NN 10_1101-2020_01_28_923532 504 28 https://doi.org/10.1101/2020.01.28.923532 https://doi.org/10.1101/2020.01.28.923532 UH 10_1101-2020_01_28_923532 504 29 39 39 CD 10_1101-2020_01_28_923532 504 30 𝑥(𝑔 𝑥(𝑔 CD 10_1101-2020_01_28_923532 504 31 , , , 10_1101-2020_01_28_923532 504 32 𝑃(𝑖 𝑃(𝑖 CD 10_1101-2020_01_28_923532 504 33 ) ) -RRB- 10_1101-2020_01_28_923532 504 34 ) ) -RRB- 10_1101-2020_01_28_923532 504 35 ≤ ≤ NNP 10_1101-2020_01_28_923532 504 36 𝑥(𝑔 𝑥(𝑔 NNP 10_1101-2020_01_28_923532 504 37 ) ) -RRB- 10_1101-2020_01_28_923532 504 38 ∀𝑖∀𝑔 ∀𝑖∀𝑔 CD 10_1101-2020_01_28_923532 504 39 ∈ ∈ NNP 10_1101-2020_01_28_923532 504 40 𝑈 𝑈 NNP 10_1101-2020_01_28_923532 504 41 ( ( -LRB- 10_1101-2020_01_28_923532 504 42 3 3 CD 10_1101-2020_01_28_923532 504 43 ) ) -RRB- 10_1101-2020_01_28_923532 504 44 ∑ ∑ . 10_1101-2020_01_28_923532 504 45 𝑔∈𝐶 𝑔∈𝐶 NN 10_1101-2020_01_28_923532 504 46 𝑥(𝑔 𝑥(𝑔 NN 10_1101-2020_01_28_923532 504 47 , , , 10_1101-2020_01_28_923532 504 48 𝑃(𝑖 𝑃(𝑖 CD 10_1101-2020_01_28_923532 504 49 ) ) -RRB- 10_1101-2020_01_28_923532 504 50 ) ) -RRB- 10_1101-2020_01_28_923532 504 51 ≥ ≥ UH 10_1101-2020_01_28_923532 504 52 1 1 CD 10_1101-2020_01_28_923532 504 53 ∀𝑖∀𝐶 ∀𝑖∀𝐶 NNS 10_1101-2020_01_28_923532 504 54 ∈ ∈ NNP 10_1101-2020_01_28_923532 504 55 𝑆𝑃(𝑖 𝑆𝑃(𝑖 NN 10_1101-2020_01_28_923532 504 56 ) ) -RRB- 10_1101-2020_01_28_923532 504 57 ( ( -LRB- 10_1101-2020_01_28_923532 504 58 4 4 LS 10_1101-2020_01_28_923532 504 59 ) ) -RRB- 10_1101-2020_01_28_923532 504 60 Parameterization parameterization NN 10_1101-2020_01_28_923532 504 61 of of IN 10_1101-2020_01_28_923532 504 62 the the DT 10_1101-2020_01_28_923532 504 63 Fair Fair NNP 10_1101-2020_01_28_923532 504 64 Cohort Cohort NNP 10_1101-2020_01_28_923532 504 65 Target Target NNP 10_1101-2020_01_28_923532 504 66 Set Set VBD 10_1101-2020_01_28_923532 504 67 Problem problem NN 10_1101-2020_01_28_923532 504 68 In in IN 10_1101-2020_01_28_923532 504 69 the the DT 10_1101-2020_01_28_923532 504 70 Fair Fair NNP 10_1101-2020_01_28_923532 504 71 Cohort Cohort NNP 10_1101-2020_01_28_923532 504 72 Target Target NNP 10_1101-2020_01_28_923532 504 73 Set Set NNP 10_1101-2020_01_28_923532 504 74 ILP ILP NNP 10_1101-2020_01_28_923532 504 75 shown show VBN 10_1101-2020_01_28_923532 504 76 above above RB 10_1101-2020_01_28_923532 504 77 , , , 10_1101-2020_01_28_923532 504 78 we -PRON- PRP 10_1101-2020_01_28_923532 504 79 give give VBP 10_1101-2020_01_28_923532 504 80 more more JJR 10_1101-2020_01_28_923532 504 81 preference preference NN 10_1101-2020_01_28_923532 504 82 towards towards IN 10_1101-2020_01_28_923532 504 83 minimizing minimize VBG 10_1101-2020_01_28_923532 504 84 number number NN 10_1101-2020_01_28_923532 504 85 of of IN 10_1101-2020_01_28_923532 504 86 genes gene NNS 10_1101-2020_01_28_923532 504 87 needed need VBN 10_1101-2020_01_28_923532 504 88 in in IN 10_1101-2020_01_28_923532 504 89 the the DT 10_1101-2020_01_28_923532 504 90 CTS CTS NNP 10_1101-2020_01_28_923532 504 91 . . . 10_1101-2020_01_28_923532 505 1 However however RB 10_1101-2020_01_28_923532 505 2 , , , 10_1101-2020_01_28_923532 505 3 we -PRON- PRP 10_1101-2020_01_28_923532 505 4 do do VBP 10_1101-2020_01_28_923532 505 5 not not RB 10_1101-2020_01_28_923532 505 6 take take VB 10_1101-2020_01_28_923532 505 7 into into IN 10_1101-2020_01_28_923532 505 8 account account NN 10_1101-2020_01_28_923532 505 9 the the DT 10_1101-2020_01_28_923532 505 10 number number NN 10_1101-2020_01_28_923532 505 11 of of IN 10_1101-2020_01_28_923532 505 12 non- non- NNP 10_1101-2020_01_28_923532 505 13 tumor tumor NN 10_1101-2020_01_28_923532 505 14 cells cell NNS 10_1101-2020_01_28_923532 505 15 killed kill VBN 10_1101-2020_01_28_923532 505 16 . . . 10_1101-2020_01_28_923532 506 1 Killing kill VBG 10_1101-2020_01_28_923532 506 2 ( ( -LRB- 10_1101-2020_01_28_923532 506 3 covering cover VBG 10_1101-2020_01_28_923532 506 4 ) ) -RRB- 10_1101-2020_01_28_923532 506 5 too too RB 10_1101-2020_01_28_923532 506 6 many many JJ 10_1101-2020_01_28_923532 506 7 non non JJ 10_1101-2020_01_28_923532 506 8 - - JJ 10_1101-2020_01_28_923532 506 9 tumor tumor JJ 10_1101-2020_01_28_923532 506 10 cells cell NNS 10_1101-2020_01_28_923532 506 11 potentially potentially RB 10_1101-2020_01_28_923532 506 12 hurts hurt VBZ 10_1101-2020_01_28_923532 506 13 patients patient NNS 10_1101-2020_01_28_923532 506 14 . . . 10_1101-2020_01_28_923532 507 1 In in IN 10_1101-2020_01_28_923532 507 2 order order NN 10_1101-2020_01_28_923532 507 3 to to TO 10_1101-2020_01_28_923532 507 4 avoid avoid VB 10_1101-2020_01_28_923532 507 5 that that DT 10_1101-2020_01_28_923532 507 6 , , , 10_1101-2020_01_28_923532 507 7 we -PRON- PRP 10_1101-2020_01_28_923532 507 8 add add VBP 10_1101-2020_01_28_923532 507 9 an an DT 10_1101-2020_01_28_923532 507 10 additional additional JJ 10_1101-2020_01_28_923532 507 11 constraint constraint NN 10_1101-2020_01_28_923532 507 12 to to IN 10_1101-2020_01_28_923532 507 13 both both PDT 10_1101-2020_01_28_923532 507 14 the the DT 10_1101-2020_01_28_923532 507 15 ILP ILP NNP 10_1101-2020_01_28_923532 507 16 for for IN 10_1101-2020_01_28_923532 507 17 the the DT 10_1101-2020_01_28_923532 507 18 local local JJ 10_1101-2020_01_28_923532 507 19 instances instance NNS 10_1101-2020_01_28_923532 507 20 and and CC 10_1101-2020_01_28_923532 507 21 the the DT 10_1101-2020_01_28_923532 507 22 global global JJ 10_1101-2020_01_28_923532 507 23 instance instance NN 10_1101-2020_01_28_923532 507 24 . . . 10_1101-2020_01_28_923532 508 1 Intuitively intuitively RB 10_1101-2020_01_28_923532 508 2 , , , 10_1101-2020_01_28_923532 508 3 for for IN 10_1101-2020_01_28_923532 508 4 patient patient JJ 10_1101-2020_01_28_923532 508 5 𝑃(𝑖 𝑃(𝑖 NNP 10_1101-2020_01_28_923532 508 6 ) ) -RRB- 10_1101-2020_01_28_923532 508 7 , , , 10_1101-2020_01_28_923532 508 8 given give VBN 10_1101-2020_01_28_923532 508 9 an an DT 10_1101-2020_01_28_923532 508 10 upper upper JJ 10_1101-2020_01_28_923532 508 11 bound bound NN 10_1101-2020_01_28_923532 508 12 of of IN 10_1101-2020_01_28_923532 508 13 the the DT 10_1101-2020_01_28_923532 508 14 portion portion NN 10_1101-2020_01_28_923532 508 15 of of IN 10_1101-2020_01_28_923532 508 16 the the DT 10_1101-2020_01_28_923532 508 17 non- non- NNP 10_1101-2020_01_28_923532 508 18 tumor tumor NNP 10_1101-2020_01_28_923532 508 19 cell cell NN 10_1101-2020_01_28_923532 508 20 killed kill VBD 10_1101-2020_01_28_923532 508 21 𝑈𝐵 𝑈𝐵 NN 10_1101-2020_01_28_923532 508 22 , , , 10_1101-2020_01_28_923532 508 23 we -PRON- PRP 10_1101-2020_01_28_923532 508 24 want want VBP 10_1101-2020_01_28_923532 508 25 to to TO 10_1101-2020_01_28_923532 508 26 find find VB 10_1101-2020_01_28_923532 508 27 the the DT 10_1101-2020_01_28_923532 508 28 smallest small JJS 10_1101-2020_01_28_923532 508 29 cohort cohort NN 10_1101-2020_01_28_923532 508 30 target target NN 10_1101-2020_01_28_923532 508 31 set set VBD 10_1101-2020_01_28_923532 508 32 𝐻(𝑖 𝐻(𝑖 CD 10_1101-2020_01_28_923532 508 33 ) ) -RRB- 10_1101-2020_01_28_923532 508 34 with with IN 10_1101-2020_01_28_923532 508 35 the the DT 10_1101-2020_01_28_923532 508 36 following follow VBG 10_1101-2020_01_28_923532 508 37 properties property NNS 10_1101-2020_01_28_923532 508 38 : : : 10_1101-2020_01_28_923532 508 39 1 1 CD 10_1101-2020_01_28_923532 508 40 . . . 10_1101-2020_01_28_923532 509 1 𝐻(𝑖 𝐻(𝑖 ADD 10_1101-2020_01_28_923532 509 2 ) ) -RRB- 10_1101-2020_01_28_923532 509 3 covers cover VBZ 10_1101-2020_01_28_923532 509 4 all all PDT 10_1101-2020_01_28_923532 509 5 the the DT 10_1101-2020_01_28_923532 509 6 tumor tumor NN 10_1101-2020_01_28_923532 509 7 cells cell NNS 10_1101-2020_01_28_923532 509 8 of of IN 10_1101-2020_01_28_923532 509 9 patient patient JJ 10_1101-2020_01_28_923532 509 10 𝑃(𝑖 𝑃(𝑖 NNP 10_1101-2020_01_28_923532 509 11 ) ) -RRB- 10_1101-2020_01_28_923532 509 12 . . . 10_1101-2020_01_28_923532 510 1 2 2 LS 10_1101-2020_01_28_923532 510 2 . . . 10_1101-2020_01_28_923532 511 1 𝐻(𝑖 𝐻(𝑖 ADD 10_1101-2020_01_28_923532 511 2 ) ) -RRB- 10_1101-2020_01_28_923532 511 3 covers cover VBZ 10_1101-2020_01_28_923532 511 4 at at IN 10_1101-2020_01_28_923532 511 5 most most JJS 10_1101-2020_01_28_923532 511 6 𝑈𝐵 𝑈𝐵 NN 10_1101-2020_01_28_923532 511 7 ∗ ∗ NNP 10_1101-2020_01_28_923532 511 8 |𝑁𝑇𝑃(𝑖)| |𝑁𝑇𝑃(𝑖)| NN 10_1101-2020_01_28_923532 511 9 where where WRB 10_1101-2020_01_28_923532 511 10 𝑁𝑇𝑃(𝑖 𝑁𝑇𝑃(𝑖 JJ 10_1101-2020_01_28_923532 511 11 ) ) -RRB- 10_1101-2020_01_28_923532 511 12 is be VBZ 10_1101-2020_01_28_923532 511 13 the the DT 10_1101-2020_01_28_923532 511 14 set set NN 10_1101-2020_01_28_923532 511 15 of of IN 10_1101-2020_01_28_923532 511 16 non non JJ 10_1101-2020_01_28_923532 511 17 - - JJ 10_1101-2020_01_28_923532 511 18 tumor tumor JJ 10_1101-2020_01_28_923532 511 19 cells cell NNS 10_1101-2020_01_28_923532 511 20 known know VBN 10_1101-2020_01_28_923532 511 21 for for IN 10_1101-2020_01_28_923532 511 22 patient patient JJ 10_1101-2020_01_28_923532 511 23 𝑃(𝑖 𝑃(𝑖 NNP 10_1101-2020_01_28_923532 511 24 ) ) -RRB- 10_1101-2020_01_28_923532 511 25 ; ; : 10_1101-2020_01_28_923532 511 26 the the DT 10_1101-2020_01_28_923532 511 27 number number NN 10_1101-2020_01_28_923532 511 28 of of IN 10_1101-2020_01_28_923532 511 29 non non JJ 10_1101-2020_01_28_923532 511 30 - - JJ 10_1101-2020_01_28_923532 511 31 tumor tumor JJ 10_1101-2020_01_28_923532 511 32 cells cell NNS 10_1101-2020_01_28_923532 511 33 killed kill VBN 10_1101-2020_01_28_923532 511 34 is be VBZ 10_1101-2020_01_28_923532 511 35 represented represent VBN 10_1101-2020_01_28_923532 511 36 by by IN 10_1101-2020_01_28_923532 511 37 the the DT 10_1101-2020_01_28_923532 511 38 variable variable JJ 10_1101-2020_01_28_923532 511 39 𝑦. 𝑦. NNP 10_1101-2020_01_28_923532 512 1 The the DT 10_1101-2020_01_28_923532 512 2 ILP ILP NNP 10_1101-2020_01_28_923532 512 3 can can MD 10_1101-2020_01_28_923532 512 4 be be VB 10_1101-2020_01_28_923532 512 5 formulated formulate VBN 10_1101-2020_01_28_923532 512 6 as as IN 10_1101-2020_01_28_923532 512 7 follows follow VBZ 10_1101-2020_01_28_923532 512 8 : : : 10_1101-2020_01_28_923532 512 9 𝑚𝑖𝑛 𝑚𝑖𝑛 NN 10_1101-2020_01_28_923532 512 10 ∑ ∑ XX 10_1101-2020_01_28_923532 512 11 𝑔∈𝑈 𝑔∈𝑈 NFP 10_1101-2020_01_28_923532 512 12 𝑥(𝑔 𝑥(𝑔 NNP 10_1101-2020_01_28_923532 512 13 ) ) -RRB- 10_1101-2020_01_28_923532 512 14 ( ( -LRB- 10_1101-2020_01_28_923532 512 15 1 1 CD 10_1101-2020_01_28_923532 512 16 ) ) -RRB- 10_1101-2020_01_28_923532 512 17 ∑ ∑ . 10_1101-2020_01_28_923532 512 18 𝑔∈𝐶 𝑔∈𝐶 VBZ 10_1101-2020_01_28_923532 512 19 𝑥(𝑔 𝑥(𝑔 NN 10_1101-2020_01_28_923532 512 20 ) ) -RRB- 10_1101-2020_01_28_923532 512 21 ≥ ≥ NN 10_1101-2020_01_28_923532 512 22 1 1 CD 10_1101-2020_01_28_923532 512 23 ∀𝐶 ∀𝐶 NN 10_1101-2020_01_28_923532 512 24 ∈ ∈ NNP 10_1101-2020_01_28_923532 512 25 𝑆𝑃(𝑖 𝑆𝑃(𝑖 NN 10_1101-2020_01_28_923532 512 26 ) ) -RRB- 10_1101-2020_01_28_923532 512 27 ( ( -LRB- 10_1101-2020_01_28_923532 512 28 2 2 LS 10_1101-2020_01_28_923532 512 29 ) ) -RRB- 10_1101-2020_01_28_923532 512 30 𝑦(𝐶 𝑦(𝐶 NN 10_1101-2020_01_28_923532 512 31 ) ) -RRB- 10_1101-2020_01_28_923532 512 32 ≥ ≥ UH 10_1101-2020_01_28_923532 512 33 𝑚𝑎𝑥 𝑚𝑎𝑥 FW 10_1101-2020_01_28_923532 512 34 𝑔∈𝐶 𝑔∈𝐶 NNP 10_1101-2020_01_28_923532 512 35 𝑥(𝑔 𝑥(𝑔 NN 10_1101-2020_01_28_923532 512 36 ) ) -RRB- 10_1101-2020_01_28_923532 512 37 ∀𝐶 ∀𝐶 CD 10_1101-2020_01_28_923532 512 38 ∈ ∈ UH 10_1101-2020_01_28_923532 512 39 𝑁𝑇𝑃(𝑖 𝑁𝑇𝑃(𝑖 NN 10_1101-2020_01_28_923532 512 40 ) ) -RRB- 10_1101-2020_01_28_923532 512 41 ( ( -LRB- 10_1101-2020_01_28_923532 512 42 3 3 LS 10_1101-2020_01_28_923532 512 43 ) ) -RRB- 10_1101-2020_01_28_923532 512 44 ∑ ∑ . 10_1101-2020_01_28_923532 512 45 𝐶 𝐶 NN 10_1101-2020_01_28_923532 512 46 𝑦(𝐶 𝑦(𝐶 NN 10_1101-2020_01_28_923532 512 47 ) ) -RRB- 10_1101-2020_01_28_923532 512 48 ≤ ≤ NNP 10_1101-2020_01_28_923532 512 49 𝑈𝐵 𝑈𝐵 NNP 10_1101-2020_01_28_923532 512 50 ∗ ∗ NNP 10_1101-2020_01_28_923532 512 51 |𝑁𝑇𝑃(𝑖)| |𝑁𝑇𝑃(𝑖)| NNP 10_1101-2020_01_28_923532 512 52 ∀𝐶 ∀𝐶 NNP 10_1101-2020_01_28_923532 512 53 ∈ ∈ UH 10_1101-2020_01_28_923532 512 54 𝑁𝑇𝑃(𝑖 𝑁𝑇𝑃(𝑖 NN 10_1101-2020_01_28_923532 512 55 ) ) -RRB- 10_1101-2020_01_28_923532 512 56 ( ( -LRB- 10_1101-2020_01_28_923532 512 57 4 4 LS 10_1101-2020_01_28_923532 512 58 ) ) -RRB- 10_1101-2020_01_28_923532 512 59 With with IN 10_1101-2020_01_28_923532 512 60 this this DT 10_1101-2020_01_28_923532 512 61 formulation formulation NN 10_1101-2020_01_28_923532 512 62 , , , 10_1101-2020_01_28_923532 512 63 the the DT 10_1101-2020_01_28_923532 512 64 existence existence NN 10_1101-2020_01_28_923532 512 65 of of IN 10_1101-2020_01_28_923532 512 66 a a DT 10_1101-2020_01_28_923532 512 67 feasible feasible JJ 10_1101-2020_01_28_923532 512 68 solution solution NN 10_1101-2020_01_28_923532 512 69 is be VBZ 10_1101-2020_01_28_923532 512 70 not not RB 10_1101-2020_01_28_923532 512 71 guaranteed guarantee VBN 10_1101-2020_01_28_923532 512 72 . . . 10_1101-2020_01_28_923532 513 1 However however RB 10_1101-2020_01_28_923532 513 2 , , , 10_1101-2020_01_28_923532 513 3 covering cover VBG 10_1101-2020_01_28_923532 513 4 all all DT 10_1101-2020_01_28_923532 513 5 tumor tumor NN 10_1101-2020_01_28_923532 513 6 cells cell NNS 10_1101-2020_01_28_923532 513 7 might may MD 10_1101-2020_01_28_923532 513 8 not not RB 10_1101-2020_01_28_923532 513 9 always always RB 10_1101-2020_01_28_923532 513 10 be be VB 10_1101-2020_01_28_923532 513 11 necessary necessary JJ 10_1101-2020_01_28_923532 513 12 either either RB 10_1101-2020_01_28_923532 513 13 . . . 10_1101-2020_01_28_923532 514 1 This this DT 10_1101-2020_01_28_923532 514 2 statement statement NN 10_1101-2020_01_28_923532 514 3 can can MD 10_1101-2020_01_28_923532 514 4 be be VB 10_1101-2020_01_28_923532 514 5 justified justify VBN 10_1101-2020_01_28_923532 514 6 as as IN 10_1101-2020_01_28_923532 514 7 ( ( -LRB- 10_1101-2020_01_28_923532 514 8 1 1 CD 10_1101-2020_01_28_923532 514 9 ) ) -RRB- 10_1101-2020_01_28_923532 514 10 measuring measure VBG 10_1101-2020_01_28_923532 514 11 data datum NNS 10_1101-2020_01_28_923532 514 12 is be VBZ 10_1101-2020_01_28_923532 514 13 not not RB 10_1101-2020_01_28_923532 514 14 always always RB 10_1101-2020_01_28_923532 514 15 accurate accurate JJ 10_1101-2020_01_28_923532 514 16 , , , 10_1101-2020_01_28_923532 514 17 and and CC 10_1101-2020_01_28_923532 514 18 some some DT 10_1101-2020_01_28_923532 514 19 tumor tumor NN 10_1101-2020_01_28_923532 514 20 cells cell NNS 10_1101-2020_01_28_923532 514 21 could could MD 10_1101-2020_01_28_923532 514 22 be be VB 10_1101-2020_01_28_923532 514 23 missing miss VBG 10_1101-2020_01_28_923532 514 24 and and CC 10_1101-2020_01_28_923532 514 25 ( ( -LRB- 10_1101-2020_01_28_923532 514 26 2 2 LS 10_1101-2020_01_28_923532 514 27 ) ) -RRB- 10_1101-2020_01_28_923532 514 28 in in IN 10_1101-2020_01_28_923532 514 29 some some DT 10_1101-2020_01_28_923532 514 30 cases case NNS 10_1101-2020_01_28_923532 514 31 , , , 10_1101-2020_01_28_923532 514 32 it -PRON- PRP 10_1101-2020_01_28_923532 514 33 might may MD 10_1101-2020_01_28_923532 514 34 be be VB 10_1101-2020_01_28_923532 514 35 possible possible JJ 10_1101-2020_01_28_923532 514 36 to to TO 10_1101-2020_01_28_923532 514 37 handle handle VB 10_1101-2020_01_28_923532 514 38 uncovered uncovered JJ 10_1101-2020_01_28_923532 514 39 tumor tumor NN 10_1101-2020_01_28_923532 514 40 cells cell NNS 10_1101-2020_01_28_923532 514 41 using use VBG 10_1101-2020_01_28_923532 514 42 different different JJ 10_1101-2020_01_28_923532 514 43 methods method NNS 10_1101-2020_01_28_923532 514 44 . . . 10_1101-2020_01_28_923532 515 1 Hence hence RB 10_1101-2020_01_28_923532 515 2 , , , 10_1101-2020_01_28_923532 515 3 we -PRON- PRP 10_1101-2020_01_28_923532 515 4 add add VBP 10_1101-2020_01_28_923532 515 5 another another DT 10_1101-2020_01_28_923532 515 6 parameter parameter NN 10_1101-2020_01_28_923532 515 7 𝐿𝐵 𝐿𝐵 NN 10_1101-2020_01_28_923532 515 8 to to TO 10_1101-2020_01_28_923532 515 9 let let VB 10_1101-2020_01_28_923532 515 10 us -PRON- PRP 10_1101-2020_01_28_923532 515 11 model model VB 10_1101-2020_01_28_923532 515 12 this this DT 10_1101-2020_01_28_923532 515 13 scenario scenario NN 10_1101-2020_01_28_923532 515 14 . . . 10_1101-2020_01_28_923532 516 1 In in IN 10_1101-2020_01_28_923532 516 2 the the DT 10_1101-2020_01_28_923532 516 3 high high JJ 10_1101-2020_01_28_923532 516 4 - - HYPH 10_1101-2020_01_28_923532 516 5 level level NN 10_1101-2020_01_28_923532 516 6 , , , 10_1101-2020_01_28_923532 516 7 this this DT 10_1101-2020_01_28_923532 516 8 is be VBZ 10_1101-2020_01_28_923532 516 9 the the DT 10_1101-2020_01_28_923532 516 10 ratio ratio NN 10_1101-2020_01_28_923532 516 11 of of IN 10_1101-2020_01_28_923532 516 12 the the DT 10_1101-2020_01_28_923532 516 13 tumor tumor NN 10_1101-2020_01_28_923532 516 14 cells cell NNS 10_1101-2020_01_28_923532 516 15 we -PRON- PRP 10_1101-2020_01_28_923532 516 16 want want VBP 10_1101-2020_01_28_923532 516 17 to to TO 10_1101-2020_01_28_923532 516 18 cover cover VB 10_1101-2020_01_28_923532 516 19 . . . 10_1101-2020_01_28_923532 517 1 The the DT 10_1101-2020_01_28_923532 517 2 ILP ILP NNP 10_1101-2020_01_28_923532 517 3 can can MD 10_1101-2020_01_28_923532 517 4 be be VB 10_1101-2020_01_28_923532 517 5 formulated formulate VBN 10_1101-2020_01_28_923532 517 6 as as IN 10_1101-2020_01_28_923532 517 7 follows follow VBZ 10_1101-2020_01_28_923532 517 8 : : : 10_1101-2020_01_28_923532 517 9 𝑚𝑖𝑛 𝑚𝑖𝑛 NN 10_1101-2020_01_28_923532 517 10 ∑ ∑ XX 10_1101-2020_01_28_923532 517 11 𝑔∈𝑈 𝑔∈𝑈 NFP 10_1101-2020_01_28_923532 517 12 𝑥(𝑔 𝑥(𝑔 NNP 10_1101-2020_01_28_923532 517 13 ) ) -RRB- 10_1101-2020_01_28_923532 517 14 ( ( -LRB- 10_1101-2020_01_28_923532 517 15 1 1 CD 10_1101-2020_01_28_923532 517 16 ) ) -RRB- 10_1101-2020_01_28_923532 517 17 105 105 CD 10_1101-2020_01_28_923532 517 18 and and CC 10_1101-2020_01_28_923532 517 19 is be VBZ 10_1101-2020_01_28_923532 517 20 also also RB 10_1101-2020_01_28_923532 517 21 made make VBN 10_1101-2020_01_28_923532 517 22 available available JJ 10_1101-2020_01_28_923532 517 23 for for IN 10_1101-2020_01_28_923532 517 24 use use NN 10_1101-2020_01_28_923532 517 25 under under IN 10_1101-2020_01_28_923532 517 26 a a DT 10_1101-2020_01_28_923532 517 27 CC0 CC0 NNP 10_1101-2020_01_28_923532 517 28 license license NN 10_1101-2020_01_28_923532 517 29 . . . 10_1101-2020_01_28_923532 518 1 ( ( -LRB- 10_1101-2020_01_28_923532 518 2 which which WDT 10_1101-2020_01_28_923532 518 3 was be VBD 10_1101-2020_01_28_923532 518 4 not not RB 10_1101-2020_01_28_923532 518 5 certified certify VBN 10_1101-2020_01_28_923532 518 6 by by IN 10_1101-2020_01_28_923532 518 7 peer peer NN 10_1101-2020_01_28_923532 518 8 review review NN 10_1101-2020_01_28_923532 518 9 ) ) -RRB- 10_1101-2020_01_28_923532 518 10 is be VBZ 10_1101-2020_01_28_923532 518 11 the the DT 10_1101-2020_01_28_923532 518 12 author author NN 10_1101-2020_01_28_923532 518 13 / / SYM 10_1101-2020_01_28_923532 518 14 funder funder NN 10_1101-2020_01_28_923532 518 15 . . . 10_1101-2020_01_28_923532 519 1 This this DT 10_1101-2020_01_28_923532 519 2 article article NN 10_1101-2020_01_28_923532 519 3 is be VBZ 10_1101-2020_01_28_923532 519 4 a a DT 10_1101-2020_01_28_923532 519 5 US US NNP 10_1101-2020_01_28_923532 519 6 Government Government NNP 10_1101-2020_01_28_923532 519 7 work work NN 10_1101-2020_01_28_923532 519 8 . . . 10_1101-2020_01_28_923532 520 1 It -PRON- PRP 10_1101-2020_01_28_923532 520 2 is be VBZ 10_1101-2020_01_28_923532 520 3 not not RB 10_1101-2020_01_28_923532 520 4 subject subject JJ 10_1101-2020_01_28_923532 520 5 to to IN 10_1101-2020_01_28_923532 520 6 copyright copyright NN 10_1101-2020_01_28_923532 520 7 under under IN 10_1101-2020_01_28_923532 520 8 17 17 CD 10_1101-2020_01_28_923532 520 9 USC usc NN 10_1101-2020_01_28_923532 520 10 The the DT 10_1101-2020_01_28_923532 520 11 copyright copyright NN 10_1101-2020_01_28_923532 520 12 holder holder NN 10_1101-2020_01_28_923532 520 13 for for IN 10_1101-2020_01_28_923532 520 14 this this DT 10_1101-2020_01_28_923532 520 15 preprintthis preprintthis NN 10_1101-2020_01_28_923532 520 16 version version NN 10_1101-2020_01_28_923532 520 17 posted post VBD 10_1101-2020_01_28_923532 520 18 February February NNP 10_1101-2020_01_28_923532 520 19 12 12 CD 10_1101-2020_01_28_923532 520 20 , , , 10_1101-2020_01_28_923532 520 21 2021 2021 CD 10_1101-2020_01_28_923532 520 22 . . . 10_1101-2020_01_28_923532 520 23 ; ; : 10_1101-2020_01_28_923532 520 24 https://doi.org/10.1101/2020.01.28.923532doi https://doi.org/10.1101/2020.01.28.923532doi ADD 10_1101-2020_01_28_923532 520 25 : : : 10_1101-2020_01_28_923532 520 26 bioRxiv biorxiv VB 10_1101-2020_01_28_923532 520 27 preprint preprint NN 10_1101-2020_01_28_923532 520 28 https://doi.org/10.1101/2020.01.28.923532 https://doi.org/10.1101/2020.01.28.923532 UH 10_1101-2020_01_28_923532 520 29 40 40 CD 10_1101-2020_01_28_923532 520 30 ∑ ∑ CD 10_1101-2020_01_28_923532 520 31 𝐶 𝐶 NN 10_1101-2020_01_28_923532 520 32 𝑦(𝐶 𝑦(𝐶 NN 10_1101-2020_01_28_923532 520 33 ) ) -RRB- 10_1101-2020_01_28_923532 520 34 ≥ ≥ UH 10_1101-2020_01_28_923532 520 35 𝐿𝐵 𝐿𝐵 NNP 10_1101-2020_01_28_923532 520 36 ∗ ∗ NNP 10_1101-2020_01_28_923532 520 37 |𝑆𝑃(𝑖)| |𝑆𝑃(𝑖)| NNP 10_1101-2020_01_28_923532 520 38 ∀𝐶 ∀𝐶 CD 10_1101-2020_01_28_923532 520 39 ∈ ∈ NNP 10_1101-2020_01_28_923532 520 40 𝑆𝑃(𝑖 𝑆𝑃(𝑖 NN 10_1101-2020_01_28_923532 520 41 ) ) -RRB- 10_1101-2020_01_28_923532 520 42 ( ( -LRB- 10_1101-2020_01_28_923532 520 43 2 2 LS 10_1101-2020_01_28_923532 520 44 ) ) -RRB- 10_1101-2020_01_28_923532 520 45 𝑦(𝐶 𝑦(𝐶 NN 10_1101-2020_01_28_923532 520 46 ) ) -RRB- 10_1101-2020_01_28_923532 520 47 ≥ ≥ UH 10_1101-2020_01_28_923532 520 48 𝑚𝑎𝑥 𝑚𝑎𝑥 FW 10_1101-2020_01_28_923532 520 49 𝑔∈𝐶 𝑔∈𝐶 NNP 10_1101-2020_01_28_923532 520 50 𝑥(𝑔 𝑥(𝑔 NN 10_1101-2020_01_28_923532 520 51 ) ) -RRB- 10_1101-2020_01_28_923532 520 52 ∀𝐶 ∀𝐶 ADD 10_1101-2020_01_28_923532 520 53 ∈ ∈ NNP 10_1101-2020_01_28_923532 520 54 𝑆𝑃(𝑖 𝑆𝑃(𝑖 NN 10_1101-2020_01_28_923532 520 55 ) ) -RRB- 10_1101-2020_01_28_923532 520 56 ∪ ∪ NNP 10_1101-2020_01_28_923532 520 57 𝑁𝑇𝑃(𝑖 𝑁𝑇𝑃(𝑖 NN 10_1101-2020_01_28_923532 520 58 ) ) -RRB- 10_1101-2020_01_28_923532 520 59 ( ( -LRB- 10_1101-2020_01_28_923532 520 60 3 3 LS 10_1101-2020_01_28_923532 520 61 ) ) -RRB- 10_1101-2020_01_28_923532 520 62 ∑ ∑ . 10_1101-2020_01_28_923532 520 63 𝐶 𝐶 NN 10_1101-2020_01_28_923532 520 64 𝑦(𝐶 𝑦(𝐶 NN 10_1101-2020_01_28_923532 520 65 ) ) -RRB- 10_1101-2020_01_28_923532 520 66 ≤ ≤ NNP 10_1101-2020_01_28_923532 520 67 𝑈𝐵 𝑈𝐵 NNP 10_1101-2020_01_28_923532 520 68 ∗ ∗ NNP 10_1101-2020_01_28_923532 520 69 |𝑁𝑇𝑃(𝑖)| |𝑁𝑇𝑃(𝑖)| NNP 10_1101-2020_01_28_923532 520 70 ∀𝐶 ∀𝐶 NNP 10_1101-2020_01_28_923532 520 71 ∈ ∈ UH 10_1101-2020_01_28_923532 520 72 𝑁𝑇𝑃(𝑖 𝑁𝑇𝑃(𝑖 NN 10_1101-2020_01_28_923532 520 73 ) ) -RRB- 10_1101-2020_01_28_923532 520 74 ( ( -LRB- 10_1101-2020_01_28_923532 520 75 4 4 LS 10_1101-2020_01_28_923532 520 76 ) ) -RRB- 10_1101-2020_01_28_923532 520 77 Notice notice VB 10_1101-2020_01_28_923532 520 78 that that IN 10_1101-2020_01_28_923532 520 79 the the DT 10_1101-2020_01_28_923532 520 80 constraint constraint NN 10_1101-2020_01_28_923532 520 81 ( ( -LRB- 10_1101-2020_01_28_923532 520 82 2 2 LS 10_1101-2020_01_28_923532 520 83 ) ) -RRB- 10_1101-2020_01_28_923532 520 84 here here RB 10_1101-2020_01_28_923532 520 85 is be VBZ 10_1101-2020_01_28_923532 520 86 different different JJ 10_1101-2020_01_28_923532 520 87 from from IN 10_1101-2020_01_28_923532 520 88 the the DT 10_1101-2020_01_28_923532 520 89 one one NN 10_1101-2020_01_28_923532 520 90 above above IN 10_1101-2020_01_28_923532 520 91 as as IN 10_1101-2020_01_28_923532 520 92 we -PRON- PRP 10_1101-2020_01_28_923532 520 93 only only RB 10_1101-2020_01_28_923532 520 94 care care VBP 10_1101-2020_01_28_923532 520 95 about about IN 10_1101-2020_01_28_923532 520 96 the the DT 10_1101-2020_01_28_923532 520 97 total total JJ 10_1101-2020_01_28_923532 520 98 number number NN 10_1101-2020_01_28_923532 520 99 of of IN 10_1101-2020_01_28_923532 520 100 tumor tumor NN 10_1101-2020_01_28_923532 520 101 cells cell NNS 10_1101-2020_01_28_923532 520 102 covered cover VBN 10_1101-2020_01_28_923532 520 103 . . . 10_1101-2020_01_28_923532 521 1 Even even RB 10_1101-2020_01_28_923532 521 2 with with IN 10_1101-2020_01_28_923532 521 3 both both CC 10_1101-2020_01_28_923532 521 4 𝑈𝐵 𝑈𝐵 NN 10_1101-2020_01_28_923532 521 5 and and CC 10_1101-2020_01_28_923532 521 6 𝐿𝐵 𝐿𝐵 NNP 10_1101-2020_01_28_923532 521 7 , , , 10_1101-2020_01_28_923532 521 8 the the DT 10_1101-2020_01_28_923532 521 9 feasibility feasibility NN 10_1101-2020_01_28_923532 521 10 of of IN 10_1101-2020_01_28_923532 521 11 the the DT 10_1101-2020_01_28_923532 521 12 ILP ILP NNP 10_1101-2020_01_28_923532 521 13 is be VBZ 10_1101-2020_01_28_923532 521 14 still still RB 10_1101-2020_01_28_923532 521 15 not not RB 10_1101-2020_01_28_923532 521 16 guaranteed guarantee VBN 10_1101-2020_01_28_923532 521 17 . . . 10_1101-2020_01_28_923532 522 1 However however RB 10_1101-2020_01_28_923532 522 2 , , , 10_1101-2020_01_28_923532 522 3 modeling model VBG 10_1101-2020_01_28_923532 522 4 the the DT 10_1101-2020_01_28_923532 522 5 ILP ILP NNP 10_1101-2020_01_28_923532 522 6 in in IN 10_1101-2020_01_28_923532 522 7 this this DT 10_1101-2020_01_28_923532 522 8 way way NN 10_1101-2020_01_28_923532 522 9 allows allow VBZ 10_1101-2020_01_28_923532 522 10 us -PRON- PRP 10_1101-2020_01_28_923532 522 11 to to TO 10_1101-2020_01_28_923532 522 12 parameterize parameterize VB 10_1101-2020_01_28_923532 522 13 the the DT 10_1101-2020_01_28_923532 522 14 ILP ILP NNP 10_1101-2020_01_28_923532 522 15 for for IN 10_1101-2020_01_28_923532 522 16 various various JJ 10_1101-2020_01_28_923532 522 17 other other JJ 10_1101-2020_01_28_923532 522 18 scenarios scenario NNS 10_1101-2020_01_28_923532 522 19 of of IN 10_1101-2020_01_28_923532 522 20 interest interest NN 10_1101-2020_01_28_923532 522 21 . . . 10_1101-2020_01_28_923532 523 1 While while IN 10_1101-2020_01_28_923532 523 2 the the DT 10_1101-2020_01_28_923532 523 3 two two CD 10_1101-2020_01_28_923532 523 4 ILPs ilp NNS 10_1101-2020_01_28_923532 523 5 above above RB 10_1101-2020_01_28_923532 523 6 are be VBP 10_1101-2020_01_28_923532 523 7 designed design VBN 10_1101-2020_01_28_923532 523 8 for for IN 10_1101-2020_01_28_923532 523 9 one one CD 10_1101-2020_01_28_923532 523 10 patient patient NN 10_1101-2020_01_28_923532 523 11 , , , 10_1101-2020_01_28_923532 523 12 one one PRP 10_1101-2020_01_28_923532 523 13 can can MD 10_1101-2020_01_28_923532 523 14 extend extend VB 10_1101-2020_01_28_923532 523 15 these these DT 10_1101-2020_01_28_923532 523 16 ILPs ilp NNS 10_1101-2020_01_28_923532 523 17 for for IN 10_1101-2020_01_28_923532 523 18 multi multi JJ 10_1101-2020_01_28_923532 523 19 - - JJ 10_1101-2020_01_28_923532 523 20 patient patient JJ 10_1101-2020_01_28_923532 523 21 cohort cohort NN 10_1101-2020_01_28_923532 523 22 . . . 10_1101-2020_01_28_923532 524 1 𝑚𝑖𝑛 𝑚𝑖𝑛 NNP 10_1101-2020_01_28_923532 524 2 ∑ ∑ XX 10_1101-2020_01_28_923532 524 3 𝑔∈𝑈 𝑔∈𝑈 NNP 10_1101-2020_01_28_923532 524 4 𝑥(𝑔 𝑥(𝑔 NNP 10_1101-2020_01_28_923532 524 5 ) ) -RRB- 10_1101-2020_01_28_923532 524 6 ( ( -LRB- 10_1101-2020_01_28_923532 524 7 1 1 CD 10_1101-2020_01_28_923532 524 8 ) ) -RRB- 10_1101-2020_01_28_923532 524 9 ∑ ∑ . 10_1101-2020_01_28_923532 524 10 𝑔∈𝐶 𝑔∈𝐶 NN 10_1101-2020_01_28_923532 524 11 𝑥(𝑔 𝑥(𝑔 NN 10_1101-2020_01_28_923532 524 12 , , , 10_1101-2020_01_28_923532 524 13 𝑃(𝑖 𝑃(𝑖 CD 10_1101-2020_01_28_923532 524 14 ) ) -RRB- 10_1101-2020_01_28_923532 524 15 ) ) -RRB- 10_1101-2020_01_28_923532 524 16 ≤ ≤ NNP 10_1101-2020_01_28_923532 524 17 𝐻(𝑖 𝐻(𝑖 CD 10_1101-2020_01_28_923532 524 18 ) ) -RRB- 10_1101-2020_01_28_923532 524 19 + + CC 10_1101-2020_01_28_923532 524 20 𝛼 𝛼 LS 10_1101-2020_01_28_923532 524 21 ∀𝑖∀𝐶 ∀𝑖∀𝐶 NNS 10_1101-2020_01_28_923532 524 22 ∈ ∈ NNP 10_1101-2020_01_28_923532 524 23 𝑆𝑃(𝑖 𝑆𝑃(𝑖 NN 10_1101-2020_01_28_923532 524 24 ) ) -RRB- 10_1101-2020_01_28_923532 524 25 ( ( -LRB- 10_1101-2020_01_28_923532 524 26 2 2 LS 10_1101-2020_01_28_923532 524 27 ) ) -RRB- 10_1101-2020_01_28_923532 524 28 𝑥(𝑔 𝑥(𝑔 NN 10_1101-2020_01_28_923532 524 29 , , , 10_1101-2020_01_28_923532 524 30 𝑃(𝑖 𝑃(𝑖 CD 10_1101-2020_01_28_923532 524 31 ) ) -RRB- 10_1101-2020_01_28_923532 524 32 ) ) -RRB- 10_1101-2020_01_28_923532 524 33 ≤ ≤ NNP 10_1101-2020_01_28_923532 524 34 𝑥(𝑔 𝑥(𝑔 NNP 10_1101-2020_01_28_923532 524 35 ) ) -RRB- 10_1101-2020_01_28_923532 524 36 ∀𝑖 ∀𝑖 CD 10_1101-2020_01_28_923532 524 37 , , , 10_1101-2020_01_28_923532 524 38 𝑔 𝑔 NNP 10_1101-2020_01_28_923532 524 39 ∈ ∈ NNP 10_1101-2020_01_28_923532 524 40 𝑈 𝑈 NNP 10_1101-2020_01_28_923532 524 41 ( ( -LRB- 10_1101-2020_01_28_923532 524 42 3 3 CD 10_1101-2020_01_28_923532 524 43 ) ) -RRB- 10_1101-2020_01_28_923532 524 44 𝑦(𝐶 𝑦(𝐶 NN 10_1101-2020_01_28_923532 524 45 , , , 10_1101-2020_01_28_923532 524 46 𝑃𝑃(𝑖 𝑃𝑃(𝑖 NNP 10_1101-2020_01_28_923532 524 47 ) ) -RRB- 10_1101-2020_01_28_923532 524 48 ) ) -RRB- 10_1101-2020_01_28_923532 524 49 ≥ ≥ UH 10_1101-2020_01_28_923532 524 50 𝑚𝑎𝑥 𝑚𝑎𝑥 FW 10_1101-2020_01_28_923532 524 51 𝑔 𝑔 NNP 10_1101-2020_01_28_923532 524 52 ∈𝐶 ∈𝐶 NN 10_1101-2020_01_28_923532 524 53 𝑥(𝑔 𝑥(𝑔 NNP 10_1101-2020_01_28_923532 524 54 , , , 10_1101-2020_01_28_923532 524 55 𝑃(𝑖 𝑃(𝑖 CD 10_1101-2020_01_28_923532 524 56 ) ) -RRB- 10_1101-2020_01_28_923532 524 57 ) ) -RRB- 10_1101-2020_01_28_923532 524 58 ∀𝑖∀𝐶 ∀𝑖∀𝐶 VB 10_1101-2020_01_28_923532 524 59 ∈ ∈ VB 10_1101-2020_01_28_923532 524 60 𝑆𝑃(𝑖 𝑆𝑃(𝑖 NN 10_1101-2020_01_28_923532 524 61 ) ) -RRB- 10_1101-2020_01_28_923532 524 62 ( ( -LRB- 10_1101-2020_01_28_923532 524 63 4 4 CD 10_1101-2020_01_28_923532 524 64 ) ) -RRB- 10_1101-2020_01_28_923532 524 65 ∑ ∑ . 10_1101-2020_01_28_923532 524 66 𝐶 𝐶 NN 10_1101-2020_01_28_923532 524 67 𝑦(𝐶 𝑦(𝐶 NN 10_1101-2020_01_28_923532 524 68 , , , 10_1101-2020_01_28_923532 524 69 𝑃𝑃(𝑖 𝑃𝑃(𝑖 NNP 10_1101-2020_01_28_923532 524 70 ) ) -RRB- 10_1101-2020_01_28_923532 524 71 ) ) -RRB- 10_1101-2020_01_28_923532 524 72 ≥ ≥ NN 10_1101-2020_01_28_923532 524 73 𝐿𝐵 𝐿𝐵 NNP 10_1101-2020_01_28_923532 524 74 ∗ ∗ NNP 10_1101-2020_01_28_923532 524 75 |𝑆𝑃(𝑖)| |𝑆𝑃(𝑖)| NNP 10_1101-2020_01_28_923532 524 76 ∀𝑖 ∀𝑖 NNP 10_1101-2020_01_28_923532 524 77 ( ( -LRB- 10_1101-2020_01_28_923532 524 78 5 5 CD 10_1101-2020_01_28_923532 524 79 ) ) -RRB- 10_1101-2020_01_28_923532 524 80 ∑ ∑ . 10_1101-2020_01_28_923532 524 81 𝐶 𝐶 NN 10_1101-2020_01_28_923532 524 82 𝑦(𝐶 𝑦(𝐶 NN 10_1101-2020_01_28_923532 524 83 , , , 10_1101-2020_01_28_923532 524 84 𝑃𝑃(𝑖 𝑃𝑃(𝑖 NNP 10_1101-2020_01_28_923532 524 85 ) ) -RRB- 10_1101-2020_01_28_923532 524 86 ) ) -RRB- 10_1101-2020_01_28_923532 524 87 ≤ ≤ JJ 10_1101-2020_01_28_923532 524 88 𝑈𝐵 𝑈𝐵 NNP 10_1101-2020_01_28_923532 524 89 ∗ ∗ NNP 10_1101-2020_01_28_923532 524 90 |𝑁𝑇𝑃(𝑖)| |𝑁𝑇𝑃(𝑖)| NNP 10_1101-2020_01_28_923532 524 91 ∀𝑖 ∀𝑖 NNP 10_1101-2020_01_28_923532 524 92 ( ( -LRB- 10_1101-2020_01_28_923532 524 93 6 6 CD 10_1101-2020_01_28_923532 524 94 ) ) -RRB- 10_1101-2020_01_28_923532 524 95 Implementation implementation NN 10_1101-2020_01_28_923532 524 96 Note note NN 10_1101-2020_01_28_923532 524 97 , , , 10_1101-2020_01_28_923532 524 98 Accounting account VBG 10_1101-2020_01_28_923532 524 99 for for IN 10_1101-2020_01_28_923532 524 100 Multiple Multiple NNP 10_1101-2020_01_28_923532 524 101 Optima Optima NNP 10_1101-2020_01_28_923532 524 102 and and CC 10_1101-2020_01_28_923532 524 103 Software Software NNP 10_1101-2020_01_28_923532 524 104 Availability Availability NNP 10_1101-2020_01_28_923532 524 105 We -PRON- PRP 10_1101-2020_01_28_923532 524 106 implemented implement VBD 10_1101-2020_01_28_923532 524 107 in in IN 10_1101-2020_01_28_923532 524 108 Python Python NNP 10_1101-2020_01_28_923532 524 109 3 3 CD 10_1101-2020_01_28_923532 524 110 the the DT 10_1101-2020_01_28_923532 524 111 above above JJ 10_1101-2020_01_28_923532 524 112 fair fair JJ 10_1101-2020_01_28_923532 524 113 cohort cohort NN 10_1101-2020_01_28_923532 524 114 target target NN 10_1101-2020_01_28_923532 524 115 set set VBN 10_1101-2020_01_28_923532 524 116 formulations formulation NNS 10_1101-2020_01_28_923532 524 117 , , , 10_1101-2020_01_28_923532 524 118 with with IN 10_1101-2020_01_28_923532 524 119 the the DT 10_1101-2020_01_28_923532 524 120 expression expression NN 10_1101-2020_01_28_923532 524 121 ratio ratio NN 10_1101-2020_01_28_923532 524 122 𝑟 𝑟 NNP 10_1101-2020_01_28_923532 524 123 as as IN 10_1101-2020_01_28_923532 524 124 an an DT 10_1101-2020_01_28_923532 524 125 option option NN 10_1101-2020_01_28_923532 524 126 when when WRB 10_1101-2020_01_28_923532 524 127 non non JJ 10_1101-2020_01_28_923532 524 128 - - JJ 10_1101-2020_01_28_923532 524 129 tumor tumor JJ 10_1101-2020_01_28_923532 524 130 cells cell NNS 10_1101-2020_01_28_923532 524 131 are be VBP 10_1101-2020_01_28_923532 524 132 available available JJ 10_1101-2020_01_28_923532 524 133 . . . 10_1101-2020_01_28_923532 525 1 The the DT 10_1101-2020_01_28_923532 525 2 parameters parameter NNS 10_1101-2020_01_28_923532 525 3 𝛼 𝛼 LS 10_1101-2020_01_28_923532 525 4 , , , 10_1101-2020_01_28_923532 525 5 𝑙𝑏 𝑙𝑏 UH 10_1101-2020_01_28_923532 525 6 , , , 10_1101-2020_01_28_923532 525 7 𝑢𝑏 𝑢𝑏 NNP 10_1101-2020_01_28_923532 525 8 can can MD 10_1101-2020_01_28_923532 525 9 be be VB 10_1101-2020_01_28_923532 525 10 set set VBN 10_1101-2020_01_28_923532 525 11 by by IN 10_1101-2020_01_28_923532 525 12 the the DT 10_1101-2020_01_28_923532 525 13 user user NN 10_1101-2020_01_28_923532 525 14 in in IN 10_1101-2020_01_28_923532 525 15 the the DT 10_1101-2020_01_28_923532 525 16 command command NN 10_1101-2020_01_28_923532 525 17 line line NN 10_1101-2020_01_28_923532 525 18 . . . 10_1101-2020_01_28_923532 526 1 To to TO 10_1101-2020_01_28_923532 526 2 solve solve VB 10_1101-2020_01_28_923532 526 3 the the DT 10_1101-2020_01_28_923532 526 4 ILPs ilp NNS 10_1101-2020_01_28_923532 526 5 to to TO 10_1101-2020_01_28_923532 526 6 optimality optimality NN 10_1101-2020_01_28_923532 526 7 we -PRON- PRP 10_1101-2020_01_28_923532 526 8 usually usually RB 10_1101-2020_01_28_923532 526 9 used use VBD 10_1101-2020_01_28_923532 526 10 the the DT 10_1101-2020_01_28_923532 526 11 SCIP SCIP NNP 10_1101-2020_01_28_923532 526 12 library library NN 10_1101-2020_01_28_923532 526 13 and and CC 10_1101-2020_01_28_923532 526 14 its -PRON- PRP$ 10_1101-2020_01_28_923532 526 15 Python Python NNP 10_1101-2020_01_28_923532 526 16 interface891 interface891 NNP 10_1101-2020_01_28_923532 526 17 . . . 10_1101-2020_01_28_923532 527 1 To to TO 10_1101-2020_01_28_923532 527 2 obtain obtain VB 10_1101-2020_01_28_923532 527 3 multiple multiple JJ 10_1101-2020_01_28_923532 527 4 optimal optimal JJ 10_1101-2020_01_28_923532 527 5 solutions solution NNS 10_1101-2020_01_28_923532 527 6 of of IN 10_1101-2020_01_28_923532 527 7 equal equal JJ 10_1101-2020_01_28_923532 527 8 size size NN 10_1101-2020_01_28_923532 527 9 we -PRON- PRP 10_1101-2020_01_28_923532 527 10 used use VBD 10_1101-2020_01_28_923532 527 11 the the DT 10_1101-2020_01_28_923532 527 12 Gurobi Gurobi NNP 10_1101-2020_01_28_923532 527 13 library library NN 10_1101-2020_01_28_923532 527 14 ( ( -LRB- 10_1101-2020_01_28_923532 527 15 https://www.gurobi.com https://www.gurobi.com ADD 10_1101-2020_01_28_923532 527 16 ) ) -RRB- 10_1101-2020_01_28_923532 527 17 and and CC 10_1101-2020_01_28_923532 527 18 its -PRON- PRP$ 10_1101-2020_01_28_923532 527 19 python python JJ 10_1101-2020_01_28_923532 527 20 interface interface NN 10_1101-2020_01_28_923532 527 21 . . . 10_1101-2020_01_28_923532 528 1 When when WRB 10_1101-2020_01_28_923532 528 2 evaluating evaluate VBG 10_1101-2020_01_28_923532 528 3 multiple multiple JJ 10_1101-2020_01_28_923532 528 4 optima optima NN 10_1101-2020_01_28_923532 528 5 , , , 10_1101-2020_01_28_923532 528 6 for for IN 10_1101-2020_01_28_923532 528 7 all all DT 10_1101-2020_01_28_923532 528 8 feasible feasible JJ 10_1101-2020_01_28_923532 528 9 instances instance NNS 10_1101-2020_01_28_923532 528 10 , , , 10_1101-2020_01_28_923532 528 11 we -PRON- PRP 10_1101-2020_01_28_923532 528 12 sampled sample VBD 10_1101-2020_01_28_923532 528 13 50 50 CD 10_1101-2020_01_28_923532 528 14 optimal optimal JJ 10_1101-2020_01_28_923532 528 15 solutions solution NNS 10_1101-2020_01_28_923532 528 16 that that WDT 10_1101-2020_01_28_923532 528 17 may may MD 10_1101-2020_01_28_923532 528 18 or or CC 10_1101-2020_01_28_923532 528 19 may may MD 10_1101-2020_01_28_923532 528 20 not not RB 10_1101-2020_01_28_923532 528 21 be be VB 10_1101-2020_01_28_923532 528 22 distinct distinct JJ 10_1101-2020_01_28_923532 528 23 , , , 10_1101-2020_01_28_923532 528 24 using use VBG 10_1101-2020_01_28_923532 528 25 the the DT 10_1101-2020_01_28_923532 528 26 Gurobi Gurobi NNP 10_1101-2020_01_28_923532 528 27 function function NN 10_1101-2020_01_28_923532 528 28 select_solution select_solution NNP 10_1101-2020_01_28_923532 528 29 ( ( -LRB- 10_1101-2020_01_28_923532 528 30 ) ) -RRB- 10_1101-2020_01_28_923532 528 31 . . . 10_1101-2020_01_28_923532 529 1 To to TO 10_1101-2020_01_28_923532 529 2 determine determine VB 10_1101-2020_01_28_923532 529 3 how how WRB 10_1101-2020_01_28_923532 529 4 often often RB 10_1101-2020_01_28_923532 529 5 each each DT 10_1101-2020_01_28_923532 529 6 gene gene NN 10_1101-2020_01_28_923532 529 7 or or CC 10_1101-2020_01_28_923532 529 8 pair pair NN 10_1101-2020_01_28_923532 529 9 of of IN 10_1101-2020_01_28_923532 529 10 genes gene NNS 10_1101-2020_01_28_923532 529 11 occur occur VBP 10_1101-2020_01_28_923532 529 12 in in IN 10_1101-2020_01_28_923532 529 13 105 105 CD 10_1101-2020_01_28_923532 529 14 and and CC 10_1101-2020_01_28_923532 529 15 is be VBZ 10_1101-2020_01_28_923532 529 16 also also RB 10_1101-2020_01_28_923532 529 17 made make VBN 10_1101-2020_01_28_923532 529 18 available available JJ 10_1101-2020_01_28_923532 529 19 for for IN 10_1101-2020_01_28_923532 529 20 use use NN 10_1101-2020_01_28_923532 529 21 under under IN 10_1101-2020_01_28_923532 529 22 a a DT 10_1101-2020_01_28_923532 529 23 CC0 CC0 NNP 10_1101-2020_01_28_923532 529 24 license license NN 10_1101-2020_01_28_923532 529 25 . . . 10_1101-2020_01_28_923532 530 1 ( ( -LRB- 10_1101-2020_01_28_923532 530 2 which which WDT 10_1101-2020_01_28_923532 530 3 was be VBD 10_1101-2020_01_28_923532 530 4 not not RB 10_1101-2020_01_28_923532 530 5 certified certify VBN 10_1101-2020_01_28_923532 530 6 by by IN 10_1101-2020_01_28_923532 530 7 peer peer NN 10_1101-2020_01_28_923532 530 8 review review NN 10_1101-2020_01_28_923532 530 9 ) ) -RRB- 10_1101-2020_01_28_923532 530 10 is be VBZ 10_1101-2020_01_28_923532 530 11 the the DT 10_1101-2020_01_28_923532 530 12 author author NN 10_1101-2020_01_28_923532 530 13 / / SYM 10_1101-2020_01_28_923532 530 14 funder funder NN 10_1101-2020_01_28_923532 530 15 . . . 10_1101-2020_01_28_923532 531 1 This this DT 10_1101-2020_01_28_923532 531 2 article article NN 10_1101-2020_01_28_923532 531 3 is be VBZ 10_1101-2020_01_28_923532 531 4 a a DT 10_1101-2020_01_28_923532 531 5 US US NNP 10_1101-2020_01_28_923532 531 6 Government Government NNP 10_1101-2020_01_28_923532 531 7 work work NN 10_1101-2020_01_28_923532 531 8 . . . 10_1101-2020_01_28_923532 532 1 It -PRON- PRP 10_1101-2020_01_28_923532 532 2 is be VBZ 10_1101-2020_01_28_923532 532 3 not not RB 10_1101-2020_01_28_923532 532 4 subject subject JJ 10_1101-2020_01_28_923532 532 5 to to IN 10_1101-2020_01_28_923532 532 6 copyright copyright NN 10_1101-2020_01_28_923532 532 7 under under IN 10_1101-2020_01_28_923532 532 8 17 17 CD 10_1101-2020_01_28_923532 532 9 USC usc NN 10_1101-2020_01_28_923532 532 10 The the DT 10_1101-2020_01_28_923532 532 11 copyright copyright NN 10_1101-2020_01_28_923532 532 12 holder holder NN 10_1101-2020_01_28_923532 532 13 for for IN 10_1101-2020_01_28_923532 532 14 this this DT 10_1101-2020_01_28_923532 532 15 preprintthis preprintthis NN 10_1101-2020_01_28_923532 532 16 version version NN 10_1101-2020_01_28_923532 532 17 posted post VBD 10_1101-2020_01_28_923532 532 18 February February NNP 10_1101-2020_01_28_923532 532 19 12 12 CD 10_1101-2020_01_28_923532 532 20 , , , 10_1101-2020_01_28_923532 532 21 2021 2021 CD 10_1101-2020_01_28_923532 532 22 . . . 10_1101-2020_01_28_923532 532 23 ; ; : 10_1101-2020_01_28_923532 532 24 https://doi.org/10.1101/2020.01.28.923532doi https://doi.org/10.1101/2020.01.28.923532doi ADD 10_1101-2020_01_28_923532 532 25 : : : 10_1101-2020_01_28_923532 532 26 bioRxiv biorxiv VB 10_1101-2020_01_28_923532 532 27 preprint preprint NN 10_1101-2020_01_28_923532 532 28 https://www.gurobi.com/ https://www.gurobi.com/ NN 10_1101-2020_01_28_923532 532 29 https://doi.org/10.1101/2020.01.28.923532 https://doi.org/10.1101/2020.01.28.923532 UH 10_1101-2020_01_28_923532 532 30 41 41 CD 10_1101-2020_01_28_923532 532 31 optimal optimal JJ 10_1101-2020_01_28_923532 532 32 solutions solution NNS 10_1101-2020_01_28_923532 532 33 , , , 10_1101-2020_01_28_923532 532 34 we -PRON- PRP 10_1101-2020_01_28_923532 532 35 computed compute VBD 10_1101-2020_01_28_923532 532 36 the the DT 10_1101-2020_01_28_923532 532 37 arithmetic arithmetic JJ 10_1101-2020_01_28_923532 532 38 mean mean NN 10_1101-2020_01_28_923532 532 39 of of IN 10_1101-2020_01_28_923532 532 40 gene gene NN 10_1101-2020_01_28_923532 532 41 frequencies frequency NNS 10_1101-2020_01_28_923532 532 42 and and CC 10_1101-2020_01_28_923532 532 43 gene gene NN 10_1101-2020_01_28_923532 532 44 pair pair NN 10_1101-2020_01_28_923532 532 45 frequencies frequency NNS 10_1101-2020_01_28_923532 532 46 over over IN 10_1101-2020_01_28_923532 532 47 all all DT 10_1101-2020_01_28_923532 532 48 sampled sample VBN 10_1101-2020_01_28_923532 532 49 optimal optimal JJ 10_1101-2020_01_28_923532 532 50 solutions solution NNS 10_1101-2020_01_28_923532 532 51 . . . 10_1101-2020_01_28_923532 533 1 The the DT 10_1101-2020_01_28_923532 533 2 software software NN 10_1101-2020_01_28_923532 533 3 package package NN 10_1101-2020_01_28_923532 533 4 is be VBZ 10_1101-2020_01_28_923532 533 5 called call VBN 10_1101-2020_01_28_923532 533 6 MadHitter MadHitter NNP 10_1101-2020_01_28_923532 533 7 . . . 10_1101-2020_01_28_923532 534 1 The the DT 10_1101-2020_01_28_923532 534 2 main main JJ 10_1101-2020_01_28_923532 534 3 program program NN 10_1101-2020_01_28_923532 534 4 is be VBZ 10_1101-2020_01_28_923532 534 5 called call VBN 10_1101-2020_01_28_923532 534 6 hitting_set.py hitting_set.py NN 10_1101-2020_01_28_923532 534 7 . . . 10_1101-2020_01_28_923532 535 1 We -PRON- PRP 10_1101-2020_01_28_923532 535 2 include include VBP 10_1101-2020_01_28_923532 535 3 in in IN 10_1101-2020_01_28_923532 535 4 MadHitter MadHitter NNP 10_1101-2020_01_28_923532 535 5 a a DT 10_1101-2020_01_28_923532 535 6 separate separate JJ 10_1101-2020_01_28_923532 535 7 program program NN 10_1101-2020_01_28_923532 535 8 to to TO 10_1101-2020_01_28_923532 535 9 sample sample VB 10_1101-2020_01_28_923532 535 10 cells cell NNS 10_1101-2020_01_28_923532 535 11 and and CC 10_1101-2020_01_28_923532 535 12 generate generate VB 10_1101-2020_01_28_923532 535 13 replicates replicate NNS 10_1101-2020_01_28_923532 535 14 , , , 10_1101-2020_01_28_923532 535 15 called call VBN 10_1101-2020_01_28_923532 535 16 sample_columns.py sample_columns.py CD 10_1101-2020_01_28_923532 535 17 . . . 10_1101-2020_01_28_923532 536 1 So so RB 10_1101-2020_01_28_923532 536 2 long long RB 10_1101-2020_01_28_923532 536 3 as as IN 10_1101-2020_01_28_923532 536 4 one one NN 10_1101-2020_01_28_923532 536 5 seeks seek VBZ 10_1101-2020_01_28_923532 536 6 only only RB 10_1101-2020_01_28_923532 536 7 single single JJ 10_1101-2020_01_28_923532 536 8 optimal optimal JJ 10_1101-2020_01_28_923532 536 9 solutions solution NNS 10_1101-2020_01_28_923532 536 10 for for IN 10_1101-2020_01_28_923532 536 11 each each DT 10_1101-2020_01_28_923532 536 12 instance instance NN 10_1101-2020_01_28_923532 536 13 , , , 10_1101-2020_01_28_923532 536 14 exactly exactly RB 10_1101-2020_01_28_923532 536 15 one one CD 10_1101-2020_01_28_923532 536 16 of of IN 10_1101-2020_01_28_923532 536 17 SCIP SCIP NNP 10_1101-2020_01_28_923532 536 18 and and CC 10_1101-2020_01_28_923532 536 19 Gurobi Gurobi NNP 10_1101-2020_01_28_923532 536 20 is be VBZ 10_1101-2020_01_28_923532 536 21 sufficient sufficient JJ 10_1101-2020_01_28_923532 536 22 to to TO 10_1101-2020_01_28_923532 536 23 use use VB 10_1101-2020_01_28_923532 536 24 MadHitter MadHitter NNP 10_1101-2020_01_28_923532 536 25 . . . 10_1101-2020_01_28_923532 537 1 We -PRON- PRP 10_1101-2020_01_28_923532 537 2 verified verify VBD 10_1101-2020_01_28_923532 537 3 that that IN 10_1101-2020_01_28_923532 537 4 SCIP SCIP NNP 10_1101-2020_01_28_923532 537 5 and and CC 10_1101-2020_01_28_923532 537 6 Gurobi Gurobi NNP 10_1101-2020_01_28_923532 537 7 give give VBP 10_1101-2020_01_28_923532 537 8 optimal optimal JJ 10_1101-2020_01_28_923532 537 9 solutions solution NNS 10_1101-2020_01_28_923532 537 10 of of IN 10_1101-2020_01_28_923532 537 11 the the DT 10_1101-2020_01_28_923532 537 12 same same JJ 10_1101-2020_01_28_923532 537 13 size size NN 10_1101-2020_01_28_923532 537 14 . . . 10_1101-2020_01_28_923532 538 1 If if IN 10_1101-2020_01_28_923532 538 2 one one PRP 10_1101-2020_01_28_923532 538 3 wants want VBZ 10_1101-2020_01_28_923532 538 4 to to TO 10_1101-2020_01_28_923532 538 5 sample sample VB 10_1101-2020_01_28_923532 538 6 multiple multiple JJ 10_1101-2020_01_28_923532 538 7 optima optimum NNS 10_1101-2020_01_28_923532 538 8 , , , 10_1101-2020_01_28_923532 538 9 this this DT 10_1101-2020_01_28_923532 538 10 can can MD 10_1101-2020_01_28_923532 538 11 be be VB 10_1101-2020_01_28_923532 538 12 done do VBN 10_1101-2020_01_28_923532 538 13 only only RB 10_1101-2020_01_28_923532 538 14 with with IN 10_1101-2020_01_28_923532 538 15 the the DT 10_1101-2020_01_28_923532 538 16 Gurobi Gurobi NNP 10_1101-2020_01_28_923532 538 17 library library NN 10_1101-2020_01_28_923532 538 18 . . . 10_1101-2020_01_28_923532 539 1 The the DT 10_1101-2020_01_28_923532 539 2 choice choice NN 10_1101-2020_01_28_923532 539 3 between between IN 10_1101-2020_01_28_923532 539 4 SCIP SCIP NNP 10_1101-2020_01_28_923532 539 5 and and CC 10_1101-2020_01_28_923532 539 6 Gurobi Gurobi NNP 10_1101-2020_01_28_923532 539 7 and and CC 10_1101-2020_01_28_923532 539 8 the the DT 10_1101-2020_01_28_923532 539 9 number number NN 10_1101-2020_01_28_923532 539 10 of of IN 10_1101-2020_01_28_923532 539 11 optima optima NNP 10_1101-2020_01_28_923532 539 12 to to TO 10_1101-2020_01_28_923532 539 13 sample sample NN 10_1101-2020_01_28_923532 539 14 are be VBP 10_1101-2020_01_28_923532 539 15 controlled control VBN 10_1101-2020_01_28_923532 539 16 by by IN 10_1101-2020_01_28_923532 539 17 command command NN 10_1101-2020_01_28_923532 539 18 - - HYPH 10_1101-2020_01_28_923532 539 19 line line NN 10_1101-2020_01_28_923532 539 20 parameters parameter NNS 10_1101-2020_01_28_923532 539 21 use_gurobi use_gurobi NNP 10_1101-2020_01_28_923532 539 22 and and CC 10_1101-2020_01_28_923532 539 23 num_sol num_sol NNP 10_1101-2020_01_28_923532 539 24 , , , 10_1101-2020_01_28_923532 539 25 respectively respectively RB 10_1101-2020_01_28_923532 539 26 . . . 10_1101-2020_01_28_923532 540 1 The the DT 10_1101-2020_01_28_923532 540 2 MadHitter MadHitter NNP 10_1101-2020_01_28_923532 540 3 software software NN 10_1101-2020_01_28_923532 540 4 is be VBZ 10_1101-2020_01_28_923532 540 5 available available JJ 10_1101-2020_01_28_923532 540 6 on on IN 10_1101-2020_01_28_923532 540 7 GitHub GitHub NNP 10_1101-2020_01_28_923532 540 8 at at IN 10_1101-2020_01_28_923532 540 9 https://github.com/ruppinlab/madhitter https://github.com/ruppinlab/madhitter NN 10_1101-2020_01_28_923532 540 10 Acknowledgements acknowledgement NNS 10_1101-2020_01_28_923532 540 11 This this DT 10_1101-2020_01_28_923532 540 12 research research NN 10_1101-2020_01_28_923532 540 13 is be VBZ 10_1101-2020_01_28_923532 540 14 supported support VBN 10_1101-2020_01_28_923532 540 15 in in IN 10_1101-2020_01_28_923532 540 16 part part NN 10_1101-2020_01_28_923532 540 17 by by IN 10_1101-2020_01_28_923532 540 18 the the DT 10_1101-2020_01_28_923532 540 19 Intramural Intramural NNP 10_1101-2020_01_28_923532 540 20 Research Research NNP 10_1101-2020_01_28_923532 540 21 program program NN 10_1101-2020_01_28_923532 540 22 of of IN 10_1101-2020_01_28_923532 540 23 the the DT 10_1101-2020_01_28_923532 540 24 National National NNP 10_1101-2020_01_28_923532 540 25 Institutes Institutes NNPS 10_1101-2020_01_28_923532 540 26 of of IN 10_1101-2020_01_28_923532 540 27 Health Health NNP 10_1101-2020_01_28_923532 540 28 , , , 10_1101-2020_01_28_923532 540 29 National National NNP 10_1101-2020_01_28_923532 540 30 Cancer Cancer NNP 10_1101-2020_01_28_923532 540 31 Institute Institute NNP 10_1101-2020_01_28_923532 540 32 . . . 10_1101-2020_01_28_923532 541 1 This this DT 10_1101-2020_01_28_923532 541 2 research research NN 10_1101-2020_01_28_923532 541 3 is be VBZ 10_1101-2020_01_28_923532 541 4 supported support VBN 10_1101-2020_01_28_923532 541 5 in in IN 10_1101-2020_01_28_923532 541 6 part part NN 10_1101-2020_01_28_923532 541 7 by by IN 10_1101-2020_01_28_923532 541 8 the the DT 10_1101-2020_01_28_923532 541 9 University University NNP 10_1101-2020_01_28_923532 541 10 of of IN 10_1101-2020_01_28_923532 541 11 Maryland Maryland NNP 10_1101-2020_01_28_923532 541 12 Year Year NNP 10_1101-2020_01_28_923532 541 13 of of IN 10_1101-2020_01_28_923532 541 14 Data Data NNP 10_1101-2020_01_28_923532 541 15 Science Science NNP 10_1101-2020_01_28_923532 541 16 Program Program NNP 10_1101-2020_01_28_923532 541 17 . . . 10_1101-2020_01_28_923532 542 1 This this DT 10_1101-2020_01_28_923532 542 2 research research NN 10_1101-2020_01_28_923532 542 3 is be VBZ 10_1101-2020_01_28_923532 542 4 supported support VBN 10_1101-2020_01_28_923532 542 5 in in IN 10_1101-2020_01_28_923532 542 6 part part NN 10_1101-2020_01_28_923532 542 7 by by IN 10_1101-2020_01_28_923532 542 8 start start VB 10_1101-2020_01_28_923532 542 9 - - HYPH 10_1101-2020_01_28_923532 542 10 up up RP 10_1101-2020_01_28_923532 542 11 funds fund NNS 10_1101-2020_01_28_923532 542 12 from from IN 10_1101-2020_01_28_923532 542 13 Northwestern Northwestern NNP 10_1101-2020_01_28_923532 542 14 University University NNP 10_1101-2020_01_28_923532 542 15 and and CC 10_1101-2020_01_28_923532 542 16 a a DT 10_1101-2020_01_28_923532 542 17 research research NN 10_1101-2020_01_28_923532 542 18 award award NN 10_1101-2020_01_28_923532 542 19 from from IN 10_1101-2020_01_28_923532 542 20 Amazon Amazon NNP 10_1101-2020_01_28_923532 542 21 to to TO 10_1101-2020_01_28_923532 542 22 support support VB 10_1101-2020_01_28_923532 542 23 the the DT 10_1101-2020_01_28_923532 542 24 research research NN 10_1101-2020_01_28_923532 542 25 of of IN 10_1101-2020_01_28_923532 542 26 S.K. S.K. NNP 10_1101-2020_01_28_923532 543 1 This this DT 10_1101-2020_01_28_923532 543 2 work work NN 10_1101-2020_01_28_923532 543 3 utilized utilize VBD 10_1101-2020_01_28_923532 543 4 the the DT 10_1101-2020_01_28_923532 543 5 computational computational JJ 10_1101-2020_01_28_923532 543 6 resources resource NNS 10_1101-2020_01_28_923532 543 7 of of IN 10_1101-2020_01_28_923532 543 8 the the DT 10_1101-2020_01_28_923532 543 9 NIH NIH NNP 10_1101-2020_01_28_923532 543 10 HPC HPC NNP 10_1101-2020_01_28_923532 543 11 Biowulf Biowulf NNP 10_1101-2020_01_28_923532 543 12 cluster cluster NN 10_1101-2020_01_28_923532 543 13 . . . 10_1101-2020_01_28_923532 544 1 ( ( -LRB- 10_1101-2020_01_28_923532 544 2 http://hpc.nih.gov http://hpc.nih.gov NNP 10_1101-2020_01_28_923532 544 3 ) ) -RRB- 10_1101-2020_01_28_923532 544 4 . . . 10_1101-2020_01_28_923532 545 1 Thanks thank NNS 10_1101-2020_01_28_923532 545 2 to to IN 10_1101-2020_01_28_923532 545 3 E. E. NNP 10_1101-2020_01_28_923532 545 4 Michael Michael NNP 10_1101-2020_01_28_923532 545 5 Gertz Gertz NNP 10_1101-2020_01_28_923532 545 6 for for IN 10_1101-2020_01_28_923532 545 7 technical technical JJ 10_1101-2020_01_28_923532 545 8 assistance assistance NN 10_1101-2020_01_28_923532 545 9 with with IN 10_1101-2020_01_28_923532 545 10 SCIP SCIP NNP 10_1101-2020_01_28_923532 545 11 , , , 10_1101-2020_01_28_923532 545 12 Gurobi Gurobi NNP 10_1101-2020_01_28_923532 545 13 , , , 10_1101-2020_01_28_923532 545 14 and and CC 10_1101-2020_01_28_923532 545 15 Biowulf Biowulf NNP 10_1101-2020_01_28_923532 545 16 . . . 10_1101-2020_01_28_923532 546 1 Thanks thank NNS 10_1101-2020_01_28_923532 546 2 to to IN 10_1101-2020_01_28_923532 546 3 Allon Allon NNP 10_1101-2020_01_28_923532 546 4 Wagner Wagner NNP 10_1101-2020_01_28_923532 546 5 , , , 10_1101-2020_01_28_923532 546 6 Keren Keren NNP 10_1101-2020_01_28_923532 546 7 Yizhak Yizhak NNP 10_1101-2020_01_28_923532 546 8 and and CC 10_1101-2020_01_28_923532 546 9 Sushant Sushant NNP 10_1101-2020_01_28_923532 546 10 Patkar Patkar NNP 10_1101-2020_01_28_923532 546 11 for for IN 10_1101-2020_01_28_923532 546 12 assistance assistance NN 10_1101-2020_01_28_923532 546 13 in in IN 10_1101-2020_01_28_923532 546 14 identifying identify VBG 10_1101-2020_01_28_923532 546 15 and and CC 10_1101-2020_01_28_923532 546 16 retrieving retrieve VBG 10_1101-2020_01_28_923532 546 17 suitable suitable JJ 10_1101-2020_01_28_923532 546 18 single single JJ 10_1101-2020_01_28_923532 546 19 - - HYPH 10_1101-2020_01_28_923532 546 20 cell cell NN 10_1101-2020_01_28_923532 546 21 RNAseq RNAseq NNP 10_1101-2020_01_28_923532 546 22 data datum NNS 10_1101-2020_01_28_923532 546 23 sets set NNS 10_1101-2020_01_28_923532 546 24 . . . 10_1101-2020_01_28_923532 547 1 Thanks thank NNS 10_1101-2020_01_28_923532 547 2 to to IN 10_1101-2020_01_28_923532 547 3 Leandro Leandro NNP 10_1101-2020_01_28_923532 547 4 Hermida Hermida NNP 10_1101-2020_01_28_923532 547 5 for for IN 10_1101-2020_01_28_923532 547 6 technical technical JJ 10_1101-2020_01_28_923532 547 7 advice advice NN 10_1101-2020_01_28_923532 547 8 . . . 10_1101-2020_01_28_923532 548 1 Competing compete VBG 10_1101-2020_01_28_923532 548 2 Interests interest NNS 10_1101-2020_01_28_923532 548 3 The the DT 10_1101-2020_01_28_923532 548 4 authors author NNS 10_1101-2020_01_28_923532 548 5 declare declare VBP 10_1101-2020_01_28_923532 548 6 that that IN 10_1101-2020_01_28_923532 548 7 they -PRON- PRP 10_1101-2020_01_28_923532 548 8 have have VBP 10_1101-2020_01_28_923532 548 9 no no DT 10_1101-2020_01_28_923532 548 10 competing compete VBG 10_1101-2020_01_28_923532 548 11 interests interest NNS 10_1101-2020_01_28_923532 548 12 . . . 10_1101-2020_01_28_923532 549 1 References reference NNS 10_1101-2020_01_28_923532 549 2 1 1 CD 10_1101-2020_01_28_923532 549 3 . . . 10_1101-2020_01_28_923532 550 1 Von Von NNP 10_1101-2020_01_28_923532 550 2 Hoff Hoff NNP 10_1101-2020_01_28_923532 550 3 D.D. D.D. NNP 10_1101-2020_01_28_923532 550 4 , , , 10_1101-2020_01_28_923532 550 5 et et NNP 10_1101-2020_01_28_923532 550 6 al al NNP 10_1101-2020_01_28_923532 550 7 . . . 10_1101-2020_01_28_923532 551 1 Pilot pilot NN 10_1101-2020_01_28_923532 551 2 study study NN 10_1101-2020_01_28_923532 551 3 using use VBG 10_1101-2020_01_28_923532 551 4 molecular molecular JJ 10_1101-2020_01_28_923532 551 5 profiling profiling NN 10_1101-2020_01_28_923532 551 6 of of IN 10_1101-2020_01_28_923532 551 7 patients patient NNS 10_1101-2020_01_28_923532 551 8 ’ ’ POS 10_1101-2020_01_28_923532 551 9 tumors tumor NNS 10_1101-2020_01_28_923532 551 10 to to TO 10_1101-2020_01_28_923532 551 11 find find VB 10_1101-2020_01_28_923532 551 12 potential potential JJ 10_1101-2020_01_28_923532 551 13 targets target NNS 10_1101-2020_01_28_923532 551 14 and and CC 10_1101-2020_01_28_923532 551 15 select select VB 10_1101-2020_01_28_923532 551 16 treatments treatment NNS 10_1101-2020_01_28_923532 551 17 for for IN 10_1101-2020_01_28_923532 551 18 their -PRON- PRP$ 10_1101-2020_01_28_923532 551 19 refractory refractory JJ 10_1101-2020_01_28_923532 551 20 cancers cancer NNS 10_1101-2020_01_28_923532 551 21 . . . 10_1101-2020_01_28_923532 552 1 J. J. NNP 10_1101-2020_01_28_923532 552 2 Clin Clin NNP 10_1101-2020_01_28_923532 552 3 . . . 10_1101-2020_01_28_923532 553 1 Oncol Oncol NNP 10_1101-2020_01_28_923532 553 2 . . . 10_1101-2020_01_28_923532 554 1 28(33 28(33 CD 10_1101-2020_01_28_923532 554 2 ) ) -RRB- 10_1101-2020_01_28_923532 554 3 , , , 10_1101-2020_01_28_923532 554 4 4877 4877 CD 10_1101-2020_01_28_923532 554 5 - - SYM 10_1101-2020_01_28_923532 554 6 4883 4883 CD 10_1101-2020_01_28_923532 554 7 ( ( -LRB- 10_1101-2020_01_28_923532 554 8 2010 2010 CD 10_1101-2020_01_28_923532 554 9 ) ) -RRB- 10_1101-2020_01_28_923532 554 10 . . . 10_1101-2020_01_28_923532 555 1 105 105 CD 10_1101-2020_01_28_923532 555 2 and and CC 10_1101-2020_01_28_923532 555 3 is be VBZ 10_1101-2020_01_28_923532 555 4 also also RB 10_1101-2020_01_28_923532 555 5 made make VBN 10_1101-2020_01_28_923532 555 6 available available JJ 10_1101-2020_01_28_923532 555 7 for for IN 10_1101-2020_01_28_923532 555 8 use use NN 10_1101-2020_01_28_923532 555 9 under under IN 10_1101-2020_01_28_923532 555 10 a a DT 10_1101-2020_01_28_923532 555 11 CC0 CC0 NNP 10_1101-2020_01_28_923532 555 12 license license NN 10_1101-2020_01_28_923532 555 13 . . . 10_1101-2020_01_28_923532 556 1 ( ( -LRB- 10_1101-2020_01_28_923532 556 2 which which WDT 10_1101-2020_01_28_923532 556 3 was be VBD 10_1101-2020_01_28_923532 556 4 not not RB 10_1101-2020_01_28_923532 556 5 certified certify VBN 10_1101-2020_01_28_923532 556 6 by by IN 10_1101-2020_01_28_923532 556 7 peer peer NN 10_1101-2020_01_28_923532 556 8 review review NN 10_1101-2020_01_28_923532 556 9 ) ) -RRB- 10_1101-2020_01_28_923532 556 10 is be VBZ 10_1101-2020_01_28_923532 556 11 the the DT 10_1101-2020_01_28_923532 556 12 author author NN 10_1101-2020_01_28_923532 556 13 / / SYM 10_1101-2020_01_28_923532 556 14 funder funder NN 10_1101-2020_01_28_923532 556 15 . . . 10_1101-2020_01_28_923532 557 1 This this DT 10_1101-2020_01_28_923532 557 2 article article NN 10_1101-2020_01_28_923532 557 3 is be VBZ 10_1101-2020_01_28_923532 557 4 a a DT 10_1101-2020_01_28_923532 557 5 US US NNP 10_1101-2020_01_28_923532 557 6 Government Government NNP 10_1101-2020_01_28_923532 557 7 work work NN 10_1101-2020_01_28_923532 557 8 . . . 10_1101-2020_01_28_923532 558 1 It -PRON- PRP 10_1101-2020_01_28_923532 558 2 is be VBZ 10_1101-2020_01_28_923532 558 3 not not RB 10_1101-2020_01_28_923532 558 4 subject subject JJ 10_1101-2020_01_28_923532 558 5 to to IN 10_1101-2020_01_28_923532 558 6 copyright copyright NN 10_1101-2020_01_28_923532 558 7 under under IN 10_1101-2020_01_28_923532 558 8 17 17 CD 10_1101-2020_01_28_923532 558 9 USC usc NN 10_1101-2020_01_28_923532 558 10 The the DT 10_1101-2020_01_28_923532 558 11 copyright copyright NN 10_1101-2020_01_28_923532 558 12 holder holder NN 10_1101-2020_01_28_923532 558 13 for for IN 10_1101-2020_01_28_923532 558 14 this this DT 10_1101-2020_01_28_923532 558 15 preprintthis preprintthis NN 10_1101-2020_01_28_923532 558 16 version version NN 10_1101-2020_01_28_923532 558 17 posted post VBD 10_1101-2020_01_28_923532 558 18 February February NNP 10_1101-2020_01_28_923532 558 19 12 12 CD 10_1101-2020_01_28_923532 558 20 , , , 10_1101-2020_01_28_923532 558 21 2021 2021 CD 10_1101-2020_01_28_923532 558 22 . . . 10_1101-2020_01_28_923532 558 23 ; ; : 10_1101-2020_01_28_923532 558 24 https://doi.org/10.1101/2020.01.28.923532doi https://doi.org/10.1101/2020.01.28.923532doi ADD 10_1101-2020_01_28_923532 558 25 : : : 10_1101-2020_01_28_923532 558 26 bioRxiv biorxiv VB 10_1101-2020_01_28_923532 558 27 preprint preprint NN 10_1101-2020_01_28_923532 558 28 https://github.com/ruppinlab/madhitter https://github.com/ruppinlab/madhitter NN 10_1101-2020_01_28_923532 558 29 http://hpc.nih.gov/ http://hpc.nih.gov/ NNP 10_1101-2020_01_28_923532 558 30 https://doi.org/10.1101/2020.01.28.923532 https://doi.org/10.1101/2020.01.28.923532 ADD 10_1101-2020_01_28_923532 558 31 42 42 CD 10_1101-2020_01_28_923532 558 32 2 2 CD 10_1101-2020_01_28_923532 558 33 . . . 10_1101-2020_01_28_923532 559 1 Schütte Schütte NNP 10_1101-2020_01_28_923532 559 2 M. M. NNP 10_1101-2020_01_28_923532 559 3 , , , 10_1101-2020_01_28_923532 559 4 et et NNP 10_1101-2020_01_28_923532 559 5 al al NNP 10_1101-2020_01_28_923532 559 6 . . . 10_1101-2020_01_28_923532 560 1 Cancer cancer NN 10_1101-2020_01_28_923532 560 2 precision precision NN 10_1101-2020_01_28_923532 560 3 medicine medicine NN 10_1101-2020_01_28_923532 560 4 : : : 10_1101-2020_01_28_923532 560 5 Why why WRB 10_1101-2020_01_28_923532 560 6 more more JJR 10_1101-2020_01_28_923532 560 7 is be VBZ 10_1101-2020_01_28_923532 560 8 more more JJR 10_1101-2020_01_28_923532 560 9 and and CC 10_1101-2020_01_28_923532 560 10 DNA DNA NNP 10_1101-2020_01_28_923532 560 11 is be VBZ 10_1101-2020_01_28_923532 560 12 not not RB 10_1101-2020_01_28_923532 560 13 enough enough JJ 10_1101-2020_01_28_923532 560 14 . . . 10_1101-2020_01_28_923532 561 1 Pub pub RB 10_1101-2020_01_28_923532 561 2 . . . 10_1101-2020_01_28_923532 562 1 Health Health NNP 10_1101-2020_01_28_923532 562 2 Genomics Genomics NNPS 10_1101-2020_01_28_923532 562 3 20(2):70 20(2):70 NNP 10_1101-2020_01_28_923532 562 4 - - HYPH 10_1101-2020_01_28_923532 562 5 80 80 CD 10_1101-2020_01_28_923532 562 6 ( ( -LRB- 10_1101-2020_01_28_923532 562 7 2017 2017 CD 10_1101-2020_01_28_923532 562 8 ) ) -RRB- 10_1101-2020_01_28_923532 562 9 . . . 10_1101-2020_01_28_923532 563 1 3 3 LS 10_1101-2020_01_28_923532 563 2 . . . 10_1101-2020_01_28_923532 564 1 Jameson Jameson NNP 10_1101-2020_01_28_923532 564 2 , , , 10_1101-2020_01_28_923532 564 3 G.S. G.S. NNP 10_1101-2020_01_28_923532 564 4 , , , 10_1101-2020_01_28_923532 564 5 et et NNP 10_1101-2020_01_28_923532 564 6 al al NNP 10_1101-2020_01_28_923532 564 7 . . . 10_1101-2020_01_28_923532 565 1 A a DT 10_1101-2020_01_28_923532 565 2 pilot pilot NN 10_1101-2020_01_28_923532 565 3 study study NN 10_1101-2020_01_28_923532 565 4 utilizing utilize VBG 10_1101-2020_01_28_923532 565 5 multi multi JJ 10_1101-2020_01_28_923532 565 6 - - JJ 10_1101-2020_01_28_923532 565 7 omic omic JJ 10_1101-2020_01_28_923532 565 8 molecular molecular JJ 10_1101-2020_01_28_923532 565 9 profiling profiling NN 10_1101-2020_01_28_923532 565 10 to to TO 10_1101-2020_01_28_923532 565 11 find find VB 10_1101-2020_01_28_923532 565 12 potential potential JJ 10_1101-2020_01_28_923532 565 13 targets target NNS 10_1101-2020_01_28_923532 565 14 and and CC 10_1101-2020_01_28_923532 565 15 select select VB 10_1101-2020_01_28_923532 565 16 individualized individualized JJ 10_1101-2020_01_28_923532 565 17 treatments treatment NNS 10_1101-2020_01_28_923532 565 18 for for IN 10_1101-2020_01_28_923532 565 19 patients patient NNS 10_1101-2020_01_28_923532 565 20 with with IN 10_1101-2020_01_28_923532 565 21 previously previously RB 10_1101-2020_01_28_923532 565 22 treated treat VBN 10_1101-2020_01_28_923532 565 23 metastatic metastatic JJ 10_1101-2020_01_28_923532 565 24 breast breast NN 10_1101-2020_01_28_923532 565 25 cancer cancer NN 10_1101-2020_01_28_923532 565 26 . . . 10_1101-2020_01_28_923532 566 1 Breast Breast NNP 10_1101-2020_01_28_923532 566 2 Cancer Cancer NNP 10_1101-2020_01_28_923532 566 3 Res Res NNP 10_1101-2020_01_28_923532 566 4 . . . 10_1101-2020_01_28_923532 567 1 Treat treat VB 10_1101-2020_01_28_923532 567 2 . . . 10_1101-2020_01_28_923532 568 1 147(3 147(3 CD 10_1101-2020_01_28_923532 568 2 ) ) -RRB- 10_1101-2020_01_28_923532 568 3 , , , 10_1101-2020_01_28_923532 568 4 579 579 CD 10_1101-2020_01_28_923532 568 5 - - SYM 10_1101-2020_01_28_923532 568 6 588 588 CD 10_1101-2020_01_28_923532 568 7 ( ( -LRB- 10_1101-2020_01_28_923532 568 8 2014 2014 CD 10_1101-2020_01_28_923532 568 9 ) ) -RRB- 10_1101-2020_01_28_923532 568 10 . . . 10_1101-2020_01_28_923532 569 1 4 4 LS 10_1101-2020_01_28_923532 569 2 . . . 10_1101-2020_01_28_923532 570 1 Saulnier Saulnier NNP 10_1101-2020_01_28_923532 570 2 Sholler Sholler NNP 10_1101-2020_01_28_923532 570 3 , , , 10_1101-2020_01_28_923532 570 4 G.L. G.L. NNP 10_1101-2020_01_28_923532 570 5 , , , 10_1101-2020_01_28_923532 570 6 et et NNP 10_1101-2020_01_28_923532 570 7 al al NNP 10_1101-2020_01_28_923532 570 8 . . . 10_1101-2020_01_28_923532 571 1 Feasibility feasibility NN 10_1101-2020_01_28_923532 571 2 of of IN 10_1101-2020_01_28_923532 571 3 implementing implement VBG 10_1101-2020_01_28_923532 571 4 molecular molecular NN 10_1101-2020_01_28_923532 571 5 - - HYPH 10_1101-2020_01_28_923532 571 6 guided guide VBN 10_1101-2020_01_28_923532 571 7 therapy therapy NN 10_1101-2020_01_28_923532 571 8 for for IN 10_1101-2020_01_28_923532 571 9 the the DT 10_1101-2020_01_28_923532 571 10 treatment treatment NN 10_1101-2020_01_28_923532 571 11 of of IN 10_1101-2020_01_28_923532 571 12 patients patient NNS 10_1101-2020_01_28_923532 571 13 with with IN 10_1101-2020_01_28_923532 571 14 relapsed relapsed JJ 10_1101-2020_01_28_923532 571 15 or or CC 10_1101-2020_01_28_923532 571 16 refractory refractory JJ 10_1101-2020_01_28_923532 571 17 neuroblastoma neuroblastoma NN 10_1101-2020_01_28_923532 571 18 . . . 10_1101-2020_01_28_923532 572 1 Cancer Cancer NNP 10_1101-2020_01_28_923532 572 2 Med Med NNP 10_1101-2020_01_28_923532 572 3 . . . 10_1101-2020_01_28_923532 573 1 4(6):871 4(6):871 CD 10_1101-2020_01_28_923532 573 2 - - HYPH 10_1101-2020_01_28_923532 573 3 886 886 CD 10_1101-2020_01_28_923532 573 4 ( ( -LRB- 10_1101-2020_01_28_923532 573 5 2015 2015 CD 10_1101-2020_01_28_923532 573 6 ) ) -RRB- 10_1101-2020_01_28_923532 573 7 . . . 10_1101-2020_01_28_923532 574 1 5 5 CD 10_1101-2020_01_28_923532 574 2 . . . 10_1101-2020_01_28_923532 575 1 Byron Byron NNP 10_1101-2020_01_28_923532 575 2 , , , 10_1101-2020_01_28_923532 575 3 S.A. S.A. NNP 10_1101-2020_01_28_923532 575 4 , , , 10_1101-2020_01_28_923532 575 5 et et NNP 10_1101-2020_01_28_923532 575 6 al al NNP 10_1101-2020_01_28_923532 575 7 . . . 10_1101-2020_01_28_923532 576 1 Prospective prospective JJ 10_1101-2020_01_28_923532 576 2 feasibility feasibility NN 10_1101-2020_01_28_923532 576 3 trial trial NN 10_1101-2020_01_28_923532 576 4 for for IN 10_1101-2020_01_28_923532 576 5 genomics genomic NNS 10_1101-2020_01_28_923532 576 6 - - HYPH 10_1101-2020_01_28_923532 576 7 informed inform VBN 10_1101-2020_01_28_923532 576 8 treatment treatment NN 10_1101-2020_01_28_923532 576 9 in in IN 10_1101-2020_01_28_923532 576 10 recurrent recurrent JJ 10_1101-2020_01_28_923532 576 11 and and CC 10_1101-2020_01_28_923532 576 12 progressive progressive JJ 10_1101-2020_01_28_923532 576 13 glioblastoma glioblastoma NN 10_1101-2020_01_28_923532 576 14 . . . 10_1101-2020_01_28_923532 577 1 Clin Clin NNP 10_1101-2020_01_28_923532 577 2 . . . 10_1101-2020_01_28_923532 578 1 Cancer cancer NN 10_1101-2020_01_28_923532 578 2 Res Res NNP 10_1101-2020_01_28_923532 578 3 . . . 10_1101-2020_01_28_923532 579 1 24(2 24(2 LS 10_1101-2020_01_28_923532 579 2 ) ) -RRB- 10_1101-2020_01_28_923532 579 3 , , , 10_1101-2020_01_28_923532 579 4 295 295 CD 10_1101-2020_01_28_923532 579 5 - - SYM 10_1101-2020_01_28_923532 579 6 305 305 CD 10_1101-2020_01_28_923532 579 7 ( ( -LRB- 10_1101-2020_01_28_923532 579 8 2018 2018 CD 10_1101-2020_01_28_923532 579 9 ) ) -RRB- 10_1101-2020_01_28_923532 579 10 . . . 10_1101-2020_01_28_923532 580 1 6 6 CD 10_1101-2020_01_28_923532 580 2 . . . 10_1101-2020_01_28_923532 581 1 Schwaederle Schwaederle NNP 10_1101-2020_01_28_923532 581 2 , , , 10_1101-2020_01_28_923532 581 3 M. M. NNP 10_1101-2020_01_28_923532 581 4 , , , 10_1101-2020_01_28_923532 581 5 et et NNP 10_1101-2020_01_28_923532 581 6 al al NNP 10_1101-2020_01_28_923532 581 7 . . . 10_1101-2020_01_28_923532 582 1 Association Association NNP 10_1101-2020_01_28_923532 582 2 of of IN 10_1101-2020_01_28_923532 582 3 biomarker biomarker NN 10_1101-2020_01_28_923532 582 4 - - HYPH 10_1101-2020_01_28_923532 582 5 based base VBN 10_1101-2020_01_28_923532 582 6 treatment treatment NN 10_1101-2020_01_28_923532 582 7 strategies strategy NNS 10_1101-2020_01_28_923532 582 8 with with IN 10_1101-2020_01_28_923532 582 9 response response NN 10_1101-2020_01_28_923532 582 10 rates rate NNS 10_1101-2020_01_28_923532 582 11 and and CC 10_1101-2020_01_28_923532 582 12 progression progression NN 10_1101-2020_01_28_923532 582 13 - - HYPH 10_1101-2020_01_28_923532 582 14 free free JJ 10_1101-2020_01_28_923532 582 15 survival survival NN 10_1101-2020_01_28_923532 582 16 in in IN 10_1101-2020_01_28_923532 582 17 refractory refractory JJ 10_1101-2020_01_28_923532 582 18 malignant malignant JJ 10_1101-2020_01_28_923532 582 19 neoplasms neoplasm NNS 10_1101-2020_01_28_923532 582 20 : : : 10_1101-2020_01_28_923532 582 21 A a DT 10_1101-2020_01_28_923532 582 22 meta meta JJ 10_1101-2020_01_28_923532 582 23 - - HYPH 10_1101-2020_01_28_923532 582 24 analysis analysis NN 10_1101-2020_01_28_923532 582 25 . . . 10_1101-2020_01_28_923532 583 1 JAMA JAMA NNP 10_1101-2020_01_28_923532 583 2 Oncology Oncology NNP 10_1101-2020_01_28_923532 583 3 2(11 2(11 NNP 10_1101-2020_01_28_923532 583 4 ) ) -RRB- 10_1101-2020_01_28_923532 583 5 , , , 10_1101-2020_01_28_923532 583 6 1452 1452 CD 10_1101-2020_01_28_923532 583 7 - - SYM 10_1101-2020_01_28_923532 583 8 1459 1459 CD 10_1101-2020_01_28_923532 583 9 ( ( -LRB- 10_1101-2020_01_28_923532 583 10 2016 2016 CD 10_1101-2020_01_28_923532 583 11 ) ) -RRB- 10_1101-2020_01_28_923532 583 12 . . . 10_1101-2020_01_28_923532 584 1 7 7 LS 10_1101-2020_01_28_923532 584 2 . . . 10_1101-2020_01_28_923532 585 1 Arnedos Arnedos NNP 10_1101-2020_01_28_923532 585 2 , , , 10_1101-2020_01_28_923532 585 3 M. M. NNP 10_1101-2020_01_28_923532 585 4 , , , 10_1101-2020_01_28_923532 585 5 Vielh Vielh NNP 10_1101-2020_01_28_923532 585 6 , , , 10_1101-2020_01_28_923532 585 7 P. P. NNP 10_1101-2020_01_28_923532 585 8 , , , 10_1101-2020_01_28_923532 585 9 Soria Soria NNP 10_1101-2020_01_28_923532 585 10 , , , 10_1101-2020_01_28_923532 585 11 J.C. J.C. NNP 10_1101-2020_01_28_923532 585 12 & & CC 10_1101-2020_01_28_923532 585 13 Andre Andre NNP 10_1101-2020_01_28_923532 585 14 , , , 10_1101-2020_01_28_923532 585 15 F. F. NNP 10_1101-2020_01_28_923532 585 16 The the DT 10_1101-2020_01_28_923532 585 17 genetic genetic JJ 10_1101-2020_01_28_923532 585 18 complexity complexity NN 10_1101-2020_01_28_923532 585 19 of of IN 10_1101-2020_01_28_923532 585 20 common common JJ 10_1101-2020_01_28_923532 585 21 cancers cancer NNS 10_1101-2020_01_28_923532 585 22 and and CC 10_1101-2020_01_28_923532 585 23 the the DT 10_1101-2020_01_28_923532 585 24 promise promise NN 10_1101-2020_01_28_923532 585 25 of of IN 10_1101-2020_01_28_923532 585 26 personalized personalized JJ 10_1101-2020_01_28_923532 585 27 medicine medicine NN 10_1101-2020_01_28_923532 585 28 : : : 10_1101-2020_01_28_923532 585 29 is be VBZ 10_1101-2020_01_28_923532 585 30 there there EX 10_1101-2020_01_28_923532 585 31 any any DT 10_1101-2020_01_28_923532 585 32 hope hope NN 10_1101-2020_01_28_923532 585 33 ? ? . 10_1101-2020_01_28_923532 586 1 J. J. NNP 10_1101-2020_01_28_923532 586 2 Pathol Pathol NNP 10_1101-2020_01_28_923532 586 3 . . . 10_1101-2020_01_28_923532 587 1 232(2 232(2 LS 10_1101-2020_01_28_923532 587 2 ) ) -RRB- 10_1101-2020_01_28_923532 587 3 : : : 10_1101-2020_01_28_923532 587 4 274 274 CD 10_1101-2020_01_28_923532 587 5 - - HYPH 10_1101-2020_01_28_923532 587 6 282 282 CD 10_1101-2020_01_28_923532 587 7 ( ( -LRB- 10_1101-2020_01_28_923532 587 8 2014 2014 CD 10_1101-2020_01_28_923532 587 9 ) ) -RRB- 10_1101-2020_01_28_923532 587 10 . . . 10_1101-2020_01_28_923532 588 1 8 8 LS 10_1101-2020_01_28_923532 588 2 . . . 10_1101-2020_01_28_923532 589 1 Nikanjam Nikanjam NNP 10_1101-2020_01_28_923532 589 2 , , , 10_1101-2020_01_28_923532 589 3 M. M. NNP 10_1101-2020_01_28_923532 589 4 , , , 10_1101-2020_01_28_923532 589 5 Liu Liu NNP 10_1101-2020_01_28_923532 589 6 , , , 10_1101-2020_01_28_923532 589 7 S. S. NNP 10_1101-2020_01_28_923532 589 8 , , , 10_1101-2020_01_28_923532 589 9 Yang Yang NNP 10_1101-2020_01_28_923532 589 10 , , , 10_1101-2020_01_28_923532 589 11 J. J. NNP 10_1101-2020_01_28_923532 590 1 & & CC 10_1101-2020_01_28_923532 590 2 Kurzrock Kurzrock NNP 10_1101-2020_01_28_923532 590 3 , , , 10_1101-2020_01_28_923532 590 4 R. R. NNP 10_1101-2020_01_28_923532 590 5 Dosing Dosing NNP 10_1101-2020_01_28_923532 590 6 three three CD 10_1101-2020_01_28_923532 590 7 - - HYPH 10_1101-2020_01_28_923532 590 8 drug drug NN 10_1101-2020_01_28_923532 590 9 combinations combination NNS 10_1101-2020_01_28_923532 590 10 that that WDT 10_1101-2020_01_28_923532 590 11 include include VBP 10_1101-2020_01_28_923532 590 12 targeted target VBN 10_1101-2020_01_28_923532 590 13 anti anti JJ 10_1101-2020_01_28_923532 590 14 - - JJ 10_1101-2020_01_28_923532 590 15 cancer cancer JJ 10_1101-2020_01_28_923532 590 16 agents agent NNS 10_1101-2020_01_28_923532 590 17 : : : 10_1101-2020_01_28_923532 590 18 Analysis analysis NN 10_1101-2020_01_28_923532 590 19 of of IN 10_1101-2020_01_28_923532 590 20 37,763 37,763 CD 10_1101-2020_01_28_923532 590 21 patients patient NNS 10_1101-2020_01_28_923532 590 22 . . . 10_1101-2020_01_28_923532 591 1 Oncologist oncologist JJ 10_1101-2020_01_28_923532 591 2 22(5 22(5 CD 10_1101-2020_01_28_923532 591 3 ) ) -RRB- 10_1101-2020_01_28_923532 591 4 , , , 10_1101-2020_01_28_923532 591 5 576 576 CD 10_1101-2020_01_28_923532 591 6 - - HYPH 10_1101-2020_01_28_923532 591 7 584 584 CD 10_1101-2020_01_28_923532 591 8 ( ( -LRB- 10_1101-2020_01_28_923532 591 9 2017 2017 CD 10_1101-2020_01_28_923532 591 10 ) ) -RRB- 10_1101-2020_01_28_923532 591 11 . . . 10_1101-2020_01_28_923532 592 1 9 9 CD 10_1101-2020_01_28_923532 592 2 . . . 10_1101-2020_01_28_923532 593 1 Rebollo Rebollo NNP 10_1101-2020_01_28_923532 593 2 , , , 10_1101-2020_01_28_923532 593 3 J. J. NNP 10_1101-2020_01_28_923532 593 4 et et NNP 10_1101-2020_01_28_923532 593 5 al al NNP 10_1101-2020_01_28_923532 593 6 . . . 10_1101-2020_01_28_923532 594 1 Gene gene NN 10_1101-2020_01_28_923532 594 2 expression expression NN 10_1101-2020_01_28_923532 594 3 profiling profiling NN 10_1101-2020_01_28_923532 594 4 of of IN 10_1101-2020_01_28_923532 594 5 tumors tumor NNS 10_1101-2020_01_28_923532 594 6 from from IN 10_1101-2020_01_28_923532 594 7 heavily heavily RB 10_1101-2020_01_28_923532 594 8 pretreated pretreate VBN 10_1101-2020_01_28_923532 594 9 patients patient NNS 10_1101-2020_01_28_923532 594 10 with with IN 10_1101-2020_01_28_923532 594 11 metastatic metastatic JJ 10_1101-2020_01_28_923532 594 12 cancer cancer NN 10_1101-2020_01_28_923532 594 13 for for IN 10_1101-2020_01_28_923532 594 14 the the DT 10_1101-2020_01_28_923532 594 15 selection selection NN 10_1101-2020_01_28_923532 594 16 of of IN 10_1101-2020_01_28_923532 594 17 therapy therapy NN 10_1101-2020_01_28_923532 594 18 : : : 10_1101-2020_01_28_923532 594 19 A a DT 10_1101-2020_01_28_923532 594 20 pilot pilot NN 10_1101-2020_01_28_923532 594 21 study study NN 10_1101-2020_01_28_923532 594 22 . . . 10_1101-2020_01_28_923532 595 1 Am Am NNP 10_1101-2020_01_28_923532 595 2 . . . 10_1101-2020_01_28_923532 596 1 J. J. NNP 10_1101-2020_01_28_923532 596 2 Clin Clin NNP 10_1101-2020_01_28_923532 596 3 . . . 10_1101-2020_01_28_923532 597 1 Oncol Oncol NNP 10_1101-2020_01_28_923532 597 2 . . . 10_1101-2020_01_28_923532 598 1 40(2 40(2 LS 10_1101-2020_01_28_923532 598 2 ) ) -RRB- 10_1101-2020_01_28_923532 598 3 , , , 10_1101-2020_01_28_923532 598 4 140- 140- VBZ 10_1101-2020_01_28_923532 598 5 145 145 CD 10_1101-2020_01_28_923532 598 6 ( ( -LRB- 10_1101-2020_01_28_923532 598 7 2017 2017 CD 10_1101-2020_01_28_923532 598 8 ) ) -RRB- 10_1101-2020_01_28_923532 598 9 . . . 10_1101-2020_01_28_923532 599 1 10 10 CD 10_1101-2020_01_28_923532 599 2 . . . 10_1101-2020_01_28_923532 600 1 Sureda Sureda NNP 10_1101-2020_01_28_923532 600 2 , , , 10_1101-2020_01_28_923532 600 3 M. M. NNP 10_1101-2020_01_28_923532 600 4 , , , 10_1101-2020_01_28_923532 600 5 et et NNP 10_1101-2020_01_28_923532 600 6 al al NNP 10_1101-2020_01_28_923532 600 7 . . . 10_1101-2020_01_28_923532 601 1 Determining determine VBG 10_1101-2020_01_28_923532 601 2 personalized personalized JJ 10_1101-2020_01_28_923532 601 3 treatment treatment NN 10_1101-2020_01_28_923532 601 4 by by IN 10_1101-2020_01_28_923532 601 5 gene gene NN 10_1101-2020_01_28_923532 601 6 expression expression NN 10_1101-2020_01_28_923532 601 7 profiling profiling NN 10_1101-2020_01_28_923532 601 8 in in IN 10_1101-2020_01_28_923532 601 9 metastatic metastatic JJ 10_1101-2020_01_28_923532 601 10 breast breast NN 10_1101-2020_01_28_923532 601 11 carcinoma carcinoma NN 10_1101-2020_01_28_923532 601 12 patients patient NNS 10_1101-2020_01_28_923532 601 13 : : : 10_1101-2020_01_28_923532 601 14 a a DT 10_1101-2020_01_28_923532 601 15 pilot pilot NN 10_1101-2020_01_28_923532 601 16 study study NN 10_1101-2020_01_28_923532 601 17 . . . 10_1101-2020_01_28_923532 602 1 Clin Clin NNP 10_1101-2020_01_28_923532 602 2 . . . 10_1101-2020_01_28_923532 603 1 Trans tran NNS 10_1101-2020_01_28_923532 603 2 . . . 10_1101-2020_01_28_923532 604 1 Oncol Oncol NNP 10_1101-2020_01_28_923532 604 2 . . . 10_1101-2020_01_28_923532 605 1 20(6 20(6 LS 10_1101-2020_01_28_923532 605 2 ) ) -RRB- 10_1101-2020_01_28_923532 605 3 , , , 10_1101-2020_01_28_923532 605 4 785 785 CD 10_1101-2020_01_28_923532 605 5 - - SYM 10_1101-2020_01_28_923532 605 6 793 793 CD 10_1101-2020_01_28_923532 605 7 ( ( -LRB- 10_1101-2020_01_28_923532 605 8 2018 2018 CD 10_1101-2020_01_28_923532 605 9 ) ) -RRB- 10_1101-2020_01_28_923532 605 10 . . . 10_1101-2020_01_28_923532 606 1 11 11 CD 10_1101-2020_01_28_923532 606 2 . . . 10_1101-2020_01_28_923532 607 1 Sicklick Sicklick NNP 10_1101-2020_01_28_923532 607 2 , , , 10_1101-2020_01_28_923532 607 3 J.K. J.K. NNP 10_1101-2020_01_28_923532 607 4 , , , 10_1101-2020_01_28_923532 607 5 et et NNP 10_1101-2020_01_28_923532 607 6 al al NNP 10_1101-2020_01_28_923532 607 7 . . . 10_1101-2020_01_28_923532 608 1 Molecular molecular JJ 10_1101-2020_01_28_923532 608 2 profiling profiling NN 10_1101-2020_01_28_923532 608 3 of of IN 10_1101-2020_01_28_923532 608 4 cancer cancer NN 10_1101-2020_01_28_923532 608 5 patients patient NNS 10_1101-2020_01_28_923532 608 6 enables enable VBZ 10_1101-2020_01_28_923532 608 7 personalized personalize VBN 10_1101-2020_01_28_923532 608 8 combination combination NN 10_1101-2020_01_28_923532 608 9 therapy therapy NN 10_1101-2020_01_28_923532 608 10 : : : 10_1101-2020_01_28_923532 608 11 the the DT 10_1101-2020_01_28_923532 608 12 I I NNP 10_1101-2020_01_28_923532 608 13 - - HYPH 10_1101-2020_01_28_923532 608 14 PREDICT PREDICT NNP 10_1101-2020_01_28_923532 608 15 study study NN 10_1101-2020_01_28_923532 608 16 . . . 10_1101-2020_01_28_923532 609 1 Nat Nat NNP 10_1101-2020_01_28_923532 609 2 . . . 10_1101-2020_01_28_923532 610 1 Med Med NNP 10_1101-2020_01_28_923532 610 2 . . . 10_1101-2020_01_28_923532 611 1 25(5 25(5 LS 10_1101-2020_01_28_923532 611 2 ) ) -RRB- 10_1101-2020_01_28_923532 611 3 , , , 10_1101-2020_01_28_923532 611 4 744 744 CD 10_1101-2020_01_28_923532 611 5 - - HYPH 10_1101-2020_01_28_923532 611 6 750 750 CD 10_1101-2020_01_28_923532 611 7 ( ( -LRB- 10_1101-2020_01_28_923532 611 8 2019 2019 CD 10_1101-2020_01_28_923532 611 9 ) ) -RRB- 10_1101-2020_01_28_923532 611 10 . . . 10_1101-2020_01_28_923532 612 1 12 12 CD 10_1101-2020_01_28_923532 612 2 . . . 10_1101-2020_01_28_923532 613 1 Joo Joo NNP 10_1101-2020_01_28_923532 613 2 , , , 10_1101-2020_01_28_923532 613 3 J.I. J.I. NNP 10_1101-2020_01_28_923532 613 4 , , , 10_1101-2020_01_28_923532 613 5 et et NNP 10_1101-2020_01_28_923532 613 6 al al NNP 10_1101-2020_01_28_923532 613 7 . . . 10_1101-2020_01_28_923532 614 1 Realizing realize VBG 10_1101-2020_01_28_923532 614 2 cancer cancer NN 10_1101-2020_01_28_923532 614 3 precision precision NN 10_1101-2020_01_28_923532 614 4 medicine medicine NN 10_1101-2020_01_28_923532 614 5 by by IN 10_1101-2020_01_28_923532 614 6 integrating integrate VBG 10_1101-2020_01_28_923532 614 7 systems system NNS 10_1101-2020_01_28_923532 614 8 biology biology NN 10_1101-2020_01_28_923532 614 9 and and CC 10_1101-2020_01_28_923532 614 10 nanomaterial nanomaterial JJ 10_1101-2020_01_28_923532 614 11 engineering engineering NN 10_1101-2020_01_28_923532 614 12 . . . 10_1101-2020_01_28_923532 615 1 Adv Adv NNP 10_1101-2020_01_28_923532 615 2 . . . 10_1101-2020_01_28_923532 616 1 Mater Mater NNP 10_1101-2020_01_28_923532 616 2 . . . 10_1101-2020_01_28_923532 617 1 32(35):e1906783 32(35):e1906783 CD 10_1101-2020_01_28_923532 617 2 ( ( -LRB- 10_1101-2020_01_28_923532 617 3 2020 2020 CD 10_1101-2020_01_28_923532 617 4 ) ) -RRB- 10_1101-2020_01_28_923532 617 5 . . . 10_1101-2020_01_28_923532 618 1 13 13 CD 10_1101-2020_01_28_923532 618 2 . . . 10_1101-2020_01_28_923532 619 1 Marusyk Marusyk NNP 10_1101-2020_01_28_923532 619 2 , , , 10_1101-2020_01_28_923532 619 3 A. a. NN 10_1101-2020_01_28_923532 620 1 & & CC 10_1101-2020_01_28_923532 620 2 Polyak Polyak NNP 10_1101-2020_01_28_923532 620 3 , , , 10_1101-2020_01_28_923532 620 4 K. K. NNP 10_1101-2020_01_28_923532 620 5 Tumor Tumor NNP 10_1101-2020_01_28_923532 620 6 heterogeneity heterogeneity NN 10_1101-2020_01_28_923532 620 7 : : : 10_1101-2020_01_28_923532 620 8 Causes cause NNS 10_1101-2020_01_28_923532 620 9 and and CC 10_1101-2020_01_28_923532 620 10 consequences consequence NNS 10_1101-2020_01_28_923532 620 11 . . . 10_1101-2020_01_28_923532 621 1 Biochimica Biochimica NNP 10_1101-2020_01_28_923532 621 2 et et NNP 10_1101-2020_01_28_923532 621 3 Biophysica Biophysica NNP 10_1101-2020_01_28_923532 621 4 Acta Acta NNP 10_1101-2020_01_28_923532 621 5 1805(1 1805(1 NNP 10_1101-2020_01_28_923532 621 6 ) ) -RRB- 10_1101-2020_01_28_923532 621 7 , , , 10_1101-2020_01_28_923532 621 8 105 105 CD 10_1101-2020_01_28_923532 621 9 - - SYM 10_1101-2020_01_28_923532 621 10 117 117 CD 10_1101-2020_01_28_923532 621 11 ( ( -LRB- 10_1101-2020_01_28_923532 621 12 2010 2010 CD 10_1101-2020_01_28_923532 621 13 ) ) -RRB- 10_1101-2020_01_28_923532 621 14 . . . 10_1101-2020_01_28_923532 622 1 14 14 CD 10_1101-2020_01_28_923532 622 2 . . . 10_1101-2020_01_28_923532 623 1 McGranahan McGranahan NNP 10_1101-2020_01_28_923532 623 2 , , , 10_1101-2020_01_28_923532 623 3 N. N. NNP 10_1101-2020_01_28_923532 623 4 & & CC 10_1101-2020_01_28_923532 623 5 Swanton Swanton NNP 10_1101-2020_01_28_923532 623 6 , , , 10_1101-2020_01_28_923532 623 7 C. C. NNP 10_1101-2020_01_28_923532 623 8 Biological Biological NNP 10_1101-2020_01_28_923532 623 9 and and CC 10_1101-2020_01_28_923532 623 10 therapeutic therapeutic JJ 10_1101-2020_01_28_923532 623 11 impact impact NN 10_1101-2020_01_28_923532 623 12 of of IN 10_1101-2020_01_28_923532 623 13 intratumor intratumor JJ 10_1101-2020_01_28_923532 623 14 heterogeneity heterogeneity NN 10_1101-2020_01_28_923532 623 15 in in IN 10_1101-2020_01_28_923532 623 16 cancer cancer NN 10_1101-2020_01_28_923532 623 17 evolution evolution NN 10_1101-2020_01_28_923532 623 18 . . . 10_1101-2020_01_28_923532 624 1 Cancer cancer NN 10_1101-2020_01_28_923532 624 2 Cell Cell NNP 10_1101-2020_01_28_923532 624 3 27(1):15 27(1):15 NNP 10_1101-2020_01_28_923532 624 4 - - HYPH 10_1101-2020_01_28_923532 624 5 26 26 CD 10_1101-2020_01_28_923532 624 6 ( ( -LRB- 10_1101-2020_01_28_923532 624 7 2015 2015 CD 10_1101-2020_01_28_923532 624 8 ) ) -RRB- 10_1101-2020_01_28_923532 624 9 . . . 10_1101-2020_01_28_923532 625 1 15 15 CD 10_1101-2020_01_28_923532 625 2 . . . 10_1101-2020_01_28_923532 626 1 Yofe Yofe NNP 10_1101-2020_01_28_923532 626 2 , , , 10_1101-2020_01_28_923532 626 3 I. I. NNP 10_1101-2020_01_28_923532 626 4 , , , 10_1101-2020_01_28_923532 626 5 Dahan Dahan NNP 10_1101-2020_01_28_923532 626 6 , , , 10_1101-2020_01_28_923532 626 7 R. R. NNP 10_1101-2020_01_28_923532 626 8 & & CC 10_1101-2020_01_28_923532 626 9 Amit Amit NNP 10_1101-2020_01_28_923532 626 10 I. I. NNP 10_1101-2020_01_28_923532 626 11 Single single JJ 10_1101-2020_01_28_923532 626 12 - - HYPH 10_1101-2020_01_28_923532 626 13 cell cell NN 10_1101-2020_01_28_923532 626 14 genomic genomic JJ 10_1101-2020_01_28_923532 626 15 approaches approach NNS 10_1101-2020_01_28_923532 626 16 for for IN 10_1101-2020_01_28_923532 626 17 developing develop VBG 10_1101-2020_01_28_923532 626 18 the the DT 10_1101-2020_01_28_923532 626 19 next next JJ 10_1101-2020_01_28_923532 626 20 generation generation NN 10_1101-2020_01_28_923532 626 21 of of IN 10_1101-2020_01_28_923532 626 22 immunotherapies immunotherapy NNS 10_1101-2020_01_28_923532 626 23 . . . 10_1101-2020_01_28_923532 627 1 Nat Nat NNP 10_1101-2020_01_28_923532 627 2 . . . 10_1101-2020_01_28_923532 628 1 Med Med NNP 10_1101-2020_01_28_923532 628 2 . . . 10_1101-2020_01_28_923532 629 1 26(2 26(2 LS 10_1101-2020_01_28_923532 629 2 ) ) -RRB- 10_1101-2020_01_28_923532 629 3 , , , 10_1101-2020_01_28_923532 629 4 171 171 CD 10_1101-2020_01_28_923532 629 5 - - SYM 10_1101-2020_01_28_923532 629 6 177 177 CD 10_1101-2020_01_28_923532 629 7 ( ( -LRB- 10_1101-2020_01_28_923532 629 8 2020 2020 CD 10_1101-2020_01_28_923532 629 9 ) ) -RRB- 10_1101-2020_01_28_923532 629 10 . . . 10_1101-2020_01_28_923532 630 1 16 16 CD 10_1101-2020_01_28_923532 630 2 . . . 10_1101-2020_01_28_923532 631 1 Neelapu Neelapu NNP 10_1101-2020_01_28_923532 631 2 , , , 10_1101-2020_01_28_923532 631 3 S.S. S.S. NNP 10_1101-2020_01_28_923532 631 4 , , , 10_1101-2020_01_28_923532 631 5 et et NNP 10_1101-2020_01_28_923532 631 6 al al NNP 10_1101-2020_01_28_923532 631 7 . . . 10_1101-2020_01_28_923532 632 1 Axicabatagene axicabatagene JJ 10_1101-2020_01_28_923532 632 2 ciloleucel ciloleucel NN 10_1101-2020_01_28_923532 632 3 CAR car NN 10_1101-2020_01_28_923532 632 4 T t NN 10_1101-2020_01_28_923532 632 5 - - HYPH 10_1101-2020_01_28_923532 632 6 cell cell NN 10_1101-2020_01_28_923532 632 7 therapy therapy NN 10_1101-2020_01_28_923532 632 8 in in IN 10_1101-2020_01_28_923532 632 9 refractory refractory JJ 10_1101-2020_01_28_923532 632 10 large large JJ 10_1101-2020_01_28_923532 632 11 B b NN 10_1101-2020_01_28_923532 632 12 - - HYPH 10_1101-2020_01_28_923532 632 13 cell cell NN 10_1101-2020_01_28_923532 632 14 lymphoma lymphoma NN 10_1101-2020_01_28_923532 632 15 . . . 10_1101-2020_01_28_923532 633 1 New New NNP 10_1101-2020_01_28_923532 633 2 Engl Engl NNP 10_1101-2020_01_28_923532 633 3 . . . 10_1101-2020_01_28_923532 634 1 J. J. NNP 10_1101-2020_01_28_923532 634 2 Med Med NNP 10_1101-2020_01_28_923532 634 3 . . . 10_1101-2020_01_28_923532 635 1 377(26):2531 377(26):2531 CD 10_1101-2020_01_28_923532 635 2 - - HYPH 10_1101-2020_01_28_923532 635 3 2544 2544 CD 10_1101-2020_01_28_923532 635 4 , , , 10_1101-2020_01_28_923532 635 5 2017 2017 CD 10_1101-2020_01_28_923532 635 6 . . . 10_1101-2020_01_28_923532 636 1 17 17 CD 10_1101-2020_01_28_923532 636 2 . . . 10_1101-2020_01_28_923532 637 1 Bjorn Bjorn NNP 10_1101-2020_01_28_923532 637 2 , , , 10_1101-2020_01_28_923532 637 3 M.J. M.J. NNP 10_1101-2020_01_28_923532 637 4 , , , 10_1101-2020_01_28_923532 637 5 Ring Ring NNP 10_1101-2020_01_28_923532 637 6 , , , 10_1101-2020_01_28_923532 637 7 D. D. NNP 10_1101-2020_01_28_923532 637 8 & & CC 10_1101-2020_01_28_923532 637 9 Frankel Frankel NNP 10_1101-2020_01_28_923532 637 10 , , , 10_1101-2020_01_28_923532 637 11 A. a. NN 10_1101-2020_01_28_923532 638 1 Evaluation evaluation NN 10_1101-2020_01_28_923532 638 2 of of IN 10_1101-2020_01_28_923532 638 3 monoclonal monoclonal JJ 10_1101-2020_01_28_923532 638 4 antibodies antibody NNS 10_1101-2020_01_28_923532 638 5 for for IN 10_1101-2020_01_28_923532 638 6 the the DT 10_1101-2020_01_28_923532 638 7 development development NN 10_1101-2020_01_28_923532 638 8 of of IN 10_1101-2020_01_28_923532 638 9 breast breast NN 10_1101-2020_01_28_923532 638 10 cancer cancer NN 10_1101-2020_01_28_923532 638 11 immunotoxins immunotoxin NNS 10_1101-2020_01_28_923532 638 12 . . . 10_1101-2020_01_28_923532 639 1 Cancer cancer NN 10_1101-2020_01_28_923532 639 2 Res Res NNP 10_1101-2020_01_28_923532 639 3 . . . 10_1101-2020_01_28_923532 640 1 45(3 45(3 LS 10_1101-2020_01_28_923532 640 2 ) ) -RRB- 10_1101-2020_01_28_923532 640 3 , , , 10_1101-2020_01_28_923532 640 4 1214 1214 CD 10_1101-2020_01_28_923532 640 5 - - SYM 10_1101-2020_01_28_923532 640 6 1221 1221 CD 10_1101-2020_01_28_923532 640 7 ( ( -LRB- 10_1101-2020_01_28_923532 640 8 1985 1985 CD 10_1101-2020_01_28_923532 640 9 ) ) -RRB- 10_1101-2020_01_28_923532 640 10 . . . 10_1101-2020_01_28_923532 641 1 18 18 CD 10_1101-2020_01_28_923532 641 2 . . . 10_1101-2020_01_28_923532 642 1 Pastan Pastan NNP 10_1101-2020_01_28_923532 642 2 , , , 10_1101-2020_01_28_923532 642 3 I. I. NNP 10_1101-2020_01_28_923532 642 4 , , , 10_1101-2020_01_28_923532 642 5 Willingham Willingham NNP 10_1101-2020_01_28_923532 642 6 , , , 10_1101-2020_01_28_923532 642 7 M.C. M.C. NNP 10_1101-2020_01_28_923532 643 1 & & CC 10_1101-2020_01_28_923532 643 2 FitzGerald FitzGerald NNP 10_1101-2020_01_28_923532 643 3 D.J.P. D.J.P. NNP 10_1101-2020_01_28_923532 644 1 Immunotoxins immunotoxin NNS 10_1101-2020_01_28_923532 644 2 . . . 10_1101-2020_01_28_923532 645 1 Cell cell NN 10_1101-2020_01_28_923532 645 2 47(5 47(5 JJ 10_1101-2020_01_28_923532 645 3 ) ) -RRB- 10_1101-2020_01_28_923532 645 4 , , , 10_1101-2020_01_28_923532 645 5 641 641 CD 10_1101-2020_01_28_923532 645 6 - - SYM 10_1101-2020_01_28_923532 645 7 648 648 CD 10_1101-2020_01_28_923532 645 8 ( ( -LRB- 10_1101-2020_01_28_923532 645 9 1986 1986 CD 10_1101-2020_01_28_923532 645 10 ) ) -RRB- 10_1101-2020_01_28_923532 645 11 . . . 10_1101-2020_01_28_923532 646 1 19 19 CD 10_1101-2020_01_28_923532 646 2 . . . 10_1101-2020_01_28_923532 647 1 Gray Gray NNP 10_1101-2020_01_28_923532 647 2 , , , 10_1101-2020_01_28_923532 647 3 B.P. B.P. NNP 10_1101-2020_01_28_923532 648 1 & & CC 10_1101-2020_01_28_923532 648 2 Brown Brown NNP 10_1101-2020_01_28_923532 648 3 , , , 10_1101-2020_01_28_923532 648 4 K.C. K.C. NNP 10_1101-2020_01_28_923532 649 1 Combinatorial combinatorial JJ 10_1101-2020_01_28_923532 649 2 peptide peptide NN 10_1101-2020_01_28_923532 649 3 libraries library NNS 10_1101-2020_01_28_923532 649 4 : : : 10_1101-2020_01_28_923532 649 5 mining mine VBG 10_1101-2020_01_28_923532 649 6 for for IN 10_1101-2020_01_28_923532 649 7 cell cell NN 10_1101-2020_01_28_923532 649 8 - - HYPH 10_1101-2020_01_28_923532 649 9 binding bind VBG 10_1101-2020_01_28_923532 649 10 peptides peptide NNS 10_1101-2020_01_28_923532 649 11 . . . 10_1101-2020_01_28_923532 650 1 Chem Chem NNP 10_1101-2020_01_28_923532 650 2 . . . 10_1101-2020_01_28_923532 651 1 Rev. Rev. NNP 10_1101-2020_01_28_923532 652 1 114(2 114(2 LS 10_1101-2020_01_28_923532 652 2 ) ) -RRB- 10_1101-2020_01_28_923532 652 3 , , , 10_1101-2020_01_28_923532 652 4 1020 1020 CD 10_1101-2020_01_28_923532 652 5 - - SYM 10_1101-2020_01_28_923532 652 6 1081 1081 CD 10_1101-2020_01_28_923532 652 7 ( ( -LRB- 10_1101-2020_01_28_923532 652 8 2014 2014 CD 10_1101-2020_01_28_923532 652 9 ) ) -RRB- 10_1101-2020_01_28_923532 652 10 . . . 10_1101-2020_01_28_923532 653 1 20 20 CD 10_1101-2020_01_28_923532 653 2 . . . 10_1101-2020_01_28_923532 654 1 Liu Liu NNP 10_1101-2020_01_28_923532 654 2 , , , 10_1101-2020_01_28_923532 654 3 R. R. NNP 10_1101-2020_01_28_923532 654 4 , , , 10_1101-2020_01_28_923532 654 5 Li Li NNP 10_1101-2020_01_28_923532 654 6 , , , 10_1101-2020_01_28_923532 654 7 X. X. NNP 10_1101-2020_01_28_923532 654 8 , , , 10_1101-2020_01_28_923532 654 9 Xiao Xiao NNP 10_1101-2020_01_28_923532 654 10 , , , 10_1101-2020_01_28_923532 654 11 W. W. NNP 10_1101-2020_01_28_923532 654 12 & & CC 10_1101-2020_01_28_923532 654 13 Lam Lam NNP 10_1101-2020_01_28_923532 654 14 , , , 10_1101-2020_01_28_923532 654 15 K.S. K.S. NNP 10_1101-2020_01_28_923532 655 1 Tumor tumor NN 10_1101-2020_01_28_923532 655 2 - - HYPH 10_1101-2020_01_28_923532 655 3 targeting target VBG 10_1101-2020_01_28_923532 655 4 peptides peptide NNS 10_1101-2020_01_28_923532 655 5 from from IN 10_1101-2020_01_28_923532 655 6 combinatorial combinatorial JJ 10_1101-2020_01_28_923532 655 7 libraries library NNS 10_1101-2020_01_28_923532 655 8 . . . 10_1101-2020_01_28_923532 656 1 Adv Adv NNP 10_1101-2020_01_28_923532 656 2 . . . 10_1101-2020_01_28_923532 657 1 Drug Drug NNP 10_1101-2020_01_28_923532 657 2 Delivery Delivery NNP 10_1101-2020_01_28_923532 657 3 Rev. Rev. NNP 10_1101-2020_01_28_923532 658 1 110 110 CD 10_1101-2020_01_28_923532 658 2 - - SYM 10_1101-2020_01_28_923532 658 3 111 111 CD 10_1101-2020_01_28_923532 658 4 , , , 10_1101-2020_01_28_923532 658 5 13 13 CD 10_1101-2020_01_28_923532 658 6 - - SYM 10_1101-2020_01_28_923532 658 7 37 37 CD 10_1101-2020_01_28_923532 658 8 ( ( -LRB- 10_1101-2020_01_28_923532 658 9 2017 2017 CD 10_1101-2020_01_28_923532 658 10 ) ) -RRB- 10_1101-2020_01_28_923532 658 11 . . . 10_1101-2020_01_28_923532 659 1 21 21 CD 10_1101-2020_01_28_923532 659 2 . . . 10_1101-2020_01_28_923532 660 1 Fisher Fisher NNP 10_1101-2020_01_28_923532 660 2 , , , 10_1101-2020_01_28_923532 660 3 S.L. S.L. NNP 10_1101-2020_01_28_923532 661 1 & & CC 10_1101-2020_01_28_923532 661 2 Phillips Phillips NNP 10_1101-2020_01_28_923532 661 3 , , , 10_1101-2020_01_28_923532 661 4 A.J. A.J. NNP 10_1101-2020_01_28_923532 662 1 Targeted target VBN 10_1101-2020_01_28_923532 662 2 protein protein NN 10_1101-2020_01_28_923532 662 3 degradation degradation NN 10_1101-2020_01_28_923532 662 4 and and CC 10_1101-2020_01_28_923532 662 5 the the DT 10_1101-2020_01_28_923532 662 6 enzymology enzymology NN 10_1101-2020_01_28_923532 662 7 of of IN 10_1101-2020_01_28_923532 662 8 degraders degrader NNS 10_1101-2020_01_28_923532 662 9 . . . 10_1101-2020_01_28_923532 663 1 Curr curr UH 10_1101-2020_01_28_923532 663 2 . . . 10_1101-2020_01_28_923532 664 1 Opin opin JJ 10_1101-2020_01_28_923532 664 2 . . . 10_1101-2020_01_28_923532 665 1 Chem Chem NNP 10_1101-2020_01_28_923532 665 2 . . . 10_1101-2020_01_28_923532 666 1 Biol Biol NNP 10_1101-2020_01_28_923532 666 2 . . . 10_1101-2020_01_28_923532 667 1 44 44 CD 10_1101-2020_01_28_923532 667 2 , , , 10_1101-2020_01_28_923532 667 3 47 47 CD 10_1101-2020_01_28_923532 667 4 - - SYM 10_1101-2020_01_28_923532 667 5 55 55 CD 10_1101-2020_01_28_923532 667 6 ( ( -LRB- 10_1101-2020_01_28_923532 667 7 2018 2018 CD 10_1101-2020_01_28_923532 667 8 ) ) -RRB- 10_1101-2020_01_28_923532 667 9 . . . 10_1101-2020_01_28_923532 668 1 105 105 CD 10_1101-2020_01_28_923532 668 2 and and CC 10_1101-2020_01_28_923532 668 3 is be VBZ 10_1101-2020_01_28_923532 668 4 also also RB 10_1101-2020_01_28_923532 668 5 made make VBN 10_1101-2020_01_28_923532 668 6 available available JJ 10_1101-2020_01_28_923532 668 7 for for IN 10_1101-2020_01_28_923532 668 8 use use NN 10_1101-2020_01_28_923532 668 9 under under IN 10_1101-2020_01_28_923532 668 10 a a DT 10_1101-2020_01_28_923532 668 11 CC0 CC0 NNP 10_1101-2020_01_28_923532 668 12 license license NN 10_1101-2020_01_28_923532 668 13 . . . 10_1101-2020_01_28_923532 669 1 ( ( -LRB- 10_1101-2020_01_28_923532 669 2 which which WDT 10_1101-2020_01_28_923532 669 3 was be VBD 10_1101-2020_01_28_923532 669 4 not not RB 10_1101-2020_01_28_923532 669 5 certified certify VBN 10_1101-2020_01_28_923532 669 6 by by IN 10_1101-2020_01_28_923532 669 7 peer peer NN 10_1101-2020_01_28_923532 669 8 review review NN 10_1101-2020_01_28_923532 669 9 ) ) -RRB- 10_1101-2020_01_28_923532 669 10 is be VBZ 10_1101-2020_01_28_923532 669 11 the the DT 10_1101-2020_01_28_923532 669 12 author author NN 10_1101-2020_01_28_923532 669 13 / / SYM 10_1101-2020_01_28_923532 669 14 funder funder NN 10_1101-2020_01_28_923532 669 15 . . . 10_1101-2020_01_28_923532 670 1 This this DT 10_1101-2020_01_28_923532 670 2 article article NN 10_1101-2020_01_28_923532 670 3 is be VBZ 10_1101-2020_01_28_923532 670 4 a a DT 10_1101-2020_01_28_923532 670 5 US US NNP 10_1101-2020_01_28_923532 670 6 Government Government NNP 10_1101-2020_01_28_923532 670 7 work work NN 10_1101-2020_01_28_923532 670 8 . . . 10_1101-2020_01_28_923532 671 1 It -PRON- PRP 10_1101-2020_01_28_923532 671 2 is be VBZ 10_1101-2020_01_28_923532 671 3 not not RB 10_1101-2020_01_28_923532 671 4 subject subject JJ 10_1101-2020_01_28_923532 671 5 to to IN 10_1101-2020_01_28_923532 671 6 copyright copyright NN 10_1101-2020_01_28_923532 671 7 under under IN 10_1101-2020_01_28_923532 671 8 17 17 CD 10_1101-2020_01_28_923532 671 9 USC usc NN 10_1101-2020_01_28_923532 671 10 The the DT 10_1101-2020_01_28_923532 671 11 copyright copyright NN 10_1101-2020_01_28_923532 671 12 holder holder NN 10_1101-2020_01_28_923532 671 13 for for IN 10_1101-2020_01_28_923532 671 14 this this DT 10_1101-2020_01_28_923532 671 15 preprintthis preprintthis NN 10_1101-2020_01_28_923532 671 16 version version NN 10_1101-2020_01_28_923532 671 17 posted post VBD 10_1101-2020_01_28_923532 671 18 February February NNP 10_1101-2020_01_28_923532 671 19 12 12 CD 10_1101-2020_01_28_923532 671 20 , , , 10_1101-2020_01_28_923532 671 21 2021 2021 CD 10_1101-2020_01_28_923532 671 22 . . . 10_1101-2020_01_28_923532 671 23 ; ; : 10_1101-2020_01_28_923532 671 24 https://doi.org/10.1101/2020.01.28.923532doi https://doi.org/10.1101/2020.01.28.923532doi ADD 10_1101-2020_01_28_923532 671 25 : : : 10_1101-2020_01_28_923532 671 26 bioRxiv biorxiv VB 10_1101-2020_01_28_923532 671 27 preprint preprint NN 10_1101-2020_01_28_923532 671 28 https://www.ncbi.nlm.nih.gov/pubmed/28595192 https://www.ncbi.nlm.nih.gov/pubmed/28595192 -LRB- 10_1101-2020_01_28_923532 671 29 https://www.ncbi.nlm.nih.gov/pubmed/?term=Jameson%20GS%5BAuthor%5D&cauthor=true&cauthor_uid=25209003 https://www.ncbi.nlm.nih.gov/pubmed/?term=Jameson%20GS%5BAuthor%5D&cauthor=true&cauthor_uid=25209003 NNP 10_1101-2020_01_28_923532 671 30 https://www.ncbi.nlm.nih.gov/pubmed/?term=Jameson+GS%5Bauth%5D+2014 https://www.ncbi.nlm.nih.gov/pubmed/?term=jameson+gs%5bauth%5d+2014 CD 10_1101-2020_01_28_923532 671 31 https://www.ncbi.nlm.nih.gov/pubmed/25720842 https://www.ncbi.nlm.nih.gov/pubmed/25720842 UH 10_1101-2020_01_28_923532 671 32 https://www.ncbi.nlm.nih.gov/pubmed/25720842 https://www.ncbi.nlm.nih.gov/pubmed/25720842 UH 10_1101-2020_01_28_923532 671 33 https://www.ncbi.nlm.nih.gov/pubmed/27273579 https://www.ncbi.nlm.nih.gov/pubmed/27273579 ADD 10_1101-2020_01_28_923532 671 34 https://www.ncbi.nlm.nih.gov/pubmed/27273579 https://www.ncbi.nlm.nih.gov/pubmed/27273579 ADD 10_1101-2020_01_28_923532 671 35 https://www.ncbi.nlm.nih.gov/pubmed/28424323 https://www.ncbi.nlm.nih.gov/pubmed/28424323 NNP 10_1101-2020_01_28_923532 671 36 https://www.ncbi.nlm.nih.gov/pubmed/28424323 https://www.ncbi.nlm.nih.gov/pubmed/28424323 NNP 10_1101-2020_01_28_923532 671 37 https://www.ncbi.nlm.nih.gov/pubmed/25144266 https://www.ncbi.nlm.nih.gov/pubmed/25144266 NNP 10_1101-2020_01_28_923532 671 38 https://www.ncbi.nlm.nih.gov/pubmed/25144266 https://www.ncbi.nlm.nih.gov/pubmed/25144266 IN 10_1101-2020_01_28_923532 671 39 https://doi.org/10.1101/2020.01.28.923532 https://doi.org/10.1101/2020.01.28.923532 ADD 10_1101-2020_01_28_923532 671 40 43 43 CD 10_1101-2020_01_28_923532 671 41 22 22 CD 10_1101-2020_01_28_923532 671 42 . . . 10_1101-2020_01_28_923532 672 1 Plückthun Plückthun NNP 10_1101-2020_01_28_923532 672 2 A. A. NNP 10_1101-2020_01_28_923532 673 1 Designed design VBN 10_1101-2020_01_28_923532 673 2 ankyrin ankyrin NN 10_1101-2020_01_28_923532 673 3 repeat repeat NN 10_1101-2020_01_28_923532 673 4 proteins protein NNS 10_1101-2020_01_28_923532 673 5 ( ( -LRB- 10_1101-2020_01_28_923532 673 6 DARPins darpin NNS 10_1101-2020_01_28_923532 673 7 ) ) -RRB- 10_1101-2020_01_28_923532 673 8 : : : 10_1101-2020_01_28_923532 673 9 binding bind VBG 10_1101-2020_01_28_923532 673 10 proteins protein NNS 10_1101-2020_01_28_923532 673 11 for for IN 10_1101-2020_01_28_923532 673 12 research research NN 10_1101-2020_01_28_923532 673 13 , , , 10_1101-2020_01_28_923532 673 14 diagnostics diagnostic NNS 10_1101-2020_01_28_923532 673 15 , , , 10_1101-2020_01_28_923532 673 16 and and CC 10_1101-2020_01_28_923532 673 17 therapy therapy NN 10_1101-2020_01_28_923532 673 18 . . . 10_1101-2020_01_28_923532 674 1 Annu Annu NNP 10_1101-2020_01_28_923532 674 2 . . . 10_1101-2020_01_28_923532 675 1 Rev. Rev. NNP 10_1101-2020_01_28_923532 676 1 Pharmacol Pharmacol NNP 10_1101-2020_01_28_923532 676 2 . . . 10_1101-2020_01_28_923532 677 1 Toxicol Toxicol NNP 10_1101-2020_01_28_923532 677 2 . . . 10_1101-2020_01_28_923532 678 1 55 55 CD 10_1101-2020_01_28_923532 678 2 , , , 10_1101-2020_01_28_923532 678 3 489 489 CD 10_1101-2020_01_28_923532 678 4 - - SYM 10_1101-2020_01_28_923532 678 5 511 511 CD 10_1101-2020_01_28_923532 678 6 ( ( -LRB- 10_1101-2020_01_28_923532 678 7 2015 2015 CD 10_1101-2020_01_28_923532 678 8 ) ) -RRB- 10_1101-2020_01_28_923532 678 9 . . . 10_1101-2020_01_28_923532 679 1 23 23 CD 10_1101-2020_01_28_923532 679 2 . . . 10_1101-2020_01_28_923532 680 1 Sokolova Sokolova NNP 10_1101-2020_01_28_923532 680 2 , , , 10_1101-2020_01_28_923532 680 3 E.A. E.A. NNP 10_1101-2020_01_28_923532 680 4 , , , 10_1101-2020_01_28_923532 680 5 et et NNP 10_1101-2020_01_28_923532 680 6 al al NNP 10_1101-2020_01_28_923532 680 7 . . . 10_1101-2020_01_28_923532 681 1 HER2-specific HER2-specific NNP 10_1101-2020_01_28_923532 681 2 targeted target VBD 10_1101-2020_01_28_923532 681 3 toxin toxin NN 10_1101-2020_01_28_923532 681 4 DARPin DARPin NNP 10_1101-2020_01_28_923532 681 5 - - HYPH 10_1101-2020_01_28_923532 681 6 LoPE LoPE NNP 10_1101-2020_01_28_923532 681 7 : : : 10_1101-2020_01_28_923532 681 8 Immunogenicity immunogenicity NN 10_1101-2020_01_28_923532 681 9 and and CC 10_1101-2020_01_28_923532 681 10 antitumor antitumor NN 10_1101-2020_01_28_923532 681 11 effect effect NN 10_1101-2020_01_28_923532 681 12 on on IN 10_1101-2020_01_28_923532 681 13 intraperitoneal intraperitoneal JJ 10_1101-2020_01_28_923532 681 14 ovarian ovarian JJ 10_1101-2020_01_28_923532 681 15 cancer cancer NN 10_1101-2020_01_28_923532 681 16 xenograft xenograft NNP 10_1101-2020_01_28_923532 681 17 model model NN 10_1101-2020_01_28_923532 681 18 . . . 10_1101-2020_01_28_923532 682 1 Int Int NNP 10_1101-2020_01_28_923532 682 2 . . . 10_1101-2020_01_28_923532 683 1 J. J. NNP 10_1101-2020_01_28_923532 683 2 Mol Mol NNP 10_1101-2020_01_28_923532 683 3 . . . 10_1101-2020_01_28_923532 684 1 Sci Sci NNP 10_1101-2020_01_28_923532 684 2 . . . 10_1101-2020_01_28_923532 685 1 20(10 20(10 LS 10_1101-2020_01_28_923532 685 2 ) ) -RRB- 10_1101-2020_01_28_923532 685 3 . . . 10_1101-2020_01_28_923532 686 1 pii pii NNP 10_1101-2020_01_28_923532 686 2 : : : 10_1101-2020_01_28_923532 686 3 E2399 E2399 NNP 10_1101-2020_01_28_923532 686 4 ( ( -LRB- 10_1101-2020_01_28_923532 686 5 2019 2019 CD 10_1101-2020_01_28_923532 686 6 ) ) -RRB- 10_1101-2020_01_28_923532 686 7 . . . 10_1101-2020_01_28_923532 687 1 24 24 CD 10_1101-2020_01_28_923532 687 2 . . . 10_1101-2020_01_28_923532 688 1 Dannenfelser Dannenfelser NNP 10_1101-2020_01_28_923532 688 2 , , , 10_1101-2020_01_28_923532 688 3 R. R. NNP 10_1101-2020_01_28_923532 688 4 , , , 10_1101-2020_01_28_923532 688 5 et et NNP 10_1101-2020_01_28_923532 688 6 al al NNP 10_1101-2020_01_28_923532 688 7 . . NNP 10_1101-2020_01_28_923532 688 8 , , , 10_1101-2020_01_28_923532 688 9 Discriminatory Discriminatory NNP 10_1101-2020_01_28_923532 688 10 power power NN 10_1101-2020_01_28_923532 688 11 of of IN 10_1101-2020_01_28_923532 688 12 combinatorial combinatorial NNP 10_1101-2020_01_28_923532 688 13 antigen antigen NNP 10_1101-2020_01_28_923532 688 14 recognition recognition NNP 10_1101-2020_01_28_923532 688 15 in in IN 10_1101-2020_01_28_923532 688 16 cancer cancer NN 10_1101-2020_01_28_923532 688 17 T T NNP 10_1101-2020_01_28_923532 688 18 cell cell NN 10_1101-2020_01_28_923532 688 19 therapies therapy NNS 10_1101-2020_01_28_923532 688 20 . . . 10_1101-2020_01_28_923532 689 1 Cell Cell NNP 10_1101-2020_01_28_923532 689 2 Syst Syst NNP 10_1101-2020_01_28_923532 689 3 . . . 10_1101-2020_01_28_923532 690 1 11(3):215 11(3):215 CD 10_1101-2020_01_28_923532 690 2 - - SYM 10_1101-2020_01_28_923532 690 3 228 228 CD 10_1101-2020_01_28_923532 690 4 ( ( -LRB- 10_1101-2020_01_28_923532 690 5 2020 2020 CD 10_1101-2020_01_28_923532 690 6 ) ) -RRB- 10_1101-2020_01_28_923532 690 7 . . . 10_1101-2020_01_28_923532 691 1 25 25 CD 10_1101-2020_01_28_923532 691 2 . . . 10_1101-2020_01_28_923532 692 1 MacKay MacKay NNP 10_1101-2020_01_28_923532 692 2 , , , 10_1101-2020_01_28_923532 692 3 M. M. NNP 10_1101-2020_01_28_923532 692 4 , , , 10_1101-2020_01_28_923532 692 5 et et NNP 10_1101-2020_01_28_923532 692 6 al al NNP 10_1101-2020_01_28_923532 692 7 . . . 10_1101-2020_01_28_923532 693 1 The the DT 10_1101-2020_01_28_923532 693 2 therapeutic therapeutic JJ 10_1101-2020_01_28_923532 693 3 landscape landscape NN 10_1101-2020_01_28_923532 693 4 for for IN 10_1101-2020_01_28_923532 693 5 cells cell NNS 10_1101-2020_01_28_923532 693 6 engineered engineer VBN 10_1101-2020_01_28_923532 693 7 with with IN 10_1101-2020_01_28_923532 693 8 chimeric chimeric JJ 10_1101-2020_01_28_923532 693 9 antigen antigen NNP 10_1101-2020_01_28_923532 693 10 receptors receptor NNS 10_1101-2020_01_28_923532 693 11 . . . 10_1101-2020_01_28_923532 694 1 Nat Nat NNP 10_1101-2020_01_28_923532 694 2 . . . 10_1101-2020_01_28_923532 695 1 Biotech Biotech NNP 10_1101-2020_01_28_923532 695 2 . . . 10_1101-2020_01_28_923532 696 1 38(2 38(2 LS 10_1101-2020_01_28_923532 696 2 ) ) -RRB- 10_1101-2020_01_28_923532 696 3 , , , 10_1101-2020_01_28_923532 696 4 233 233 CD 10_1101-2020_01_28_923532 696 5 - - HYPH 10_1101-2020_01_28_923532 696 6 244 244 CD 10_1101-2020_01_28_923532 696 7 ( ( -LRB- 10_1101-2020_01_28_923532 696 8 2020 2020 CD 10_1101-2020_01_28_923532 696 9 ) ) -RRB- 10_1101-2020_01_28_923532 696 10 . . . 10_1101-2020_01_28_923532 697 1 26 26 CD 10_1101-2020_01_28_923532 697 2 . . . 10_1101-2020_01_28_923532 698 1 Maude Maude NNP 10_1101-2020_01_28_923532 698 2 , , , 10_1101-2020_01_28_923532 698 3 S.L. S.L. NNP 10_1101-2020_01_28_923532 698 4 , , , 10_1101-2020_01_28_923532 698 5 et et NNP 10_1101-2020_01_28_923532 698 6 al al NNP 10_1101-2020_01_28_923532 698 7 . . . 10_1101-2020_01_28_923532 699 1 Tisagenlecleusel tisagenlecleusel NN 10_1101-2020_01_28_923532 699 2 in in IN 10_1101-2020_01_28_923532 699 3 children child NNS 10_1101-2020_01_28_923532 699 4 and and CC 10_1101-2020_01_28_923532 699 5 young young JJ 10_1101-2020_01_28_923532 699 6 adults adult NNS 10_1101-2020_01_28_923532 699 7 with with IN 10_1101-2020_01_28_923532 699 8 B b NN 10_1101-2020_01_28_923532 699 9 - - HYPH 10_1101-2020_01_28_923532 699 10 cell cell NN 10_1101-2020_01_28_923532 699 11 lymphoblastic lymphoblastic NN 10_1101-2020_01_28_923532 699 12 leukemia leukemia NN 10_1101-2020_01_28_923532 699 13 . . . 10_1101-2020_01_28_923532 700 1 New New NNP 10_1101-2020_01_28_923532 700 2 Engl Engl NNP 10_1101-2020_01_28_923532 700 3 . . . 10_1101-2020_01_28_923532 701 1 J. J. NNP 10_1101-2020_01_28_923532 701 2 Med Med NNP 10_1101-2020_01_28_923532 701 3 . . . 10_1101-2020_01_28_923532 702 1 378(5):439 378(5):439 NNP 10_1101-2020_01_28_923532 702 2 - - SYM 10_1101-2020_01_28_923532 702 3 448 448 CD 10_1101-2020_01_28_923532 702 4 ( ( -LRB- 10_1101-2020_01_28_923532 702 5 2018 2018 CD 10_1101-2020_01_28_923532 702 6 ) ) -RRB- 10_1101-2020_01_28_923532 702 7 . . . 10_1101-2020_01_28_923532 703 1 27 27 CD 10_1101-2020_01_28_923532 703 2 . . . 10_1101-2020_01_28_923532 704 1 Lamers Lamers NNP 10_1101-2020_01_28_923532 704 2 , , , 10_1101-2020_01_28_923532 704 3 C.H. C.H. NNP 10_1101-2020_01_28_923532 704 4 , , , 10_1101-2020_01_28_923532 704 5 et et NNP 10_1101-2020_01_28_923532 704 6 al al NNP 10_1101-2020_01_28_923532 704 7 . . . 10_1101-2020_01_28_923532 705 1 Treatment treatment NN 10_1101-2020_01_28_923532 705 2 of of IN 10_1101-2020_01_28_923532 705 3 metastatic metastatic JJ 10_1101-2020_01_28_923532 705 4 renal renal JJ 10_1101-2020_01_28_923532 705 5 cell cell NN 10_1101-2020_01_28_923532 705 6 carcinoma carcinoma NN 10_1101-2020_01_28_923532 705 7 with with IN 10_1101-2020_01_28_923532 705 8 CAIX CAIX NNP 10_1101-2020_01_28_923532 705 9 CAR- CAR- NNP 10_1101-2020_01_28_923532 705 10 engineered engineer VBN 10_1101-2020_01_28_923532 705 11 T t NN 10_1101-2020_01_28_923532 705 12 cells cell NNS 10_1101-2020_01_28_923532 705 13 : : : 10_1101-2020_01_28_923532 705 14 clinical clinical JJ 10_1101-2020_01_28_923532 705 15 evaluation evaluation NN 10_1101-2020_01_28_923532 705 16 and and CC 10_1101-2020_01_28_923532 705 17 management management NN 10_1101-2020_01_28_923532 705 18 of of IN 10_1101-2020_01_28_923532 705 19 on on IN 10_1101-2020_01_28_923532 705 20 - - HYPH 10_1101-2020_01_28_923532 705 21 target target NN 10_1101-2020_01_28_923532 705 22 toxicity toxicity NN 10_1101-2020_01_28_923532 705 23 . . . 10_1101-2020_01_28_923532 706 1 Mol Mol NNP 10_1101-2020_01_28_923532 706 2 . . . 10_1101-2020_01_28_923532 707 1 Ther ther RB 10_1101-2020_01_28_923532 707 2 . . . 10_1101-2020_01_28_923532 708 1 21(4):904 21(4):904 LS 10_1101-2020_01_28_923532 708 2 - - SYM 10_1101-2020_01_28_923532 708 3 912 912 CD 10_1101-2020_01_28_923532 708 4 ( ( -LRB- 10_1101-2020_01_28_923532 708 5 2013 2013 CD 10_1101-2020_01_28_923532 708 6 ) ) -RRB- 10_1101-2020_01_28_923532 708 7 . . . 10_1101-2020_01_28_923532 709 1 28 28 CD 10_1101-2020_01_28_923532 709 2 . . . 10_1101-2020_01_28_923532 710 1 Thistlethwaite Thistlethwaite NNP 10_1101-2020_01_28_923532 710 2 , , , 10_1101-2020_01_28_923532 710 3 F.C. F.C. NNP 10_1101-2020_01_28_923532 710 4 , , , 10_1101-2020_01_28_923532 710 5 et et NNP 10_1101-2020_01_28_923532 710 6 al al NNP 10_1101-2020_01_28_923532 710 7 . . . 10_1101-2020_01_28_923532 711 1 The the DT 10_1101-2020_01_28_923532 711 2 clinical clinical JJ 10_1101-2020_01_28_923532 711 3 efficacy efficacy NN 10_1101-2020_01_28_923532 711 4 of of IN 10_1101-2020_01_28_923532 711 5 first first JJ 10_1101-2020_01_28_923532 711 6 - - HYPH 10_1101-2020_01_28_923532 711 7 generation generation NN 10_1101-2020_01_28_923532 711 8 carcinoembryonic carcinoembryonic JJ 10_1101-2020_01_28_923532 711 9 antigen antigen NN 10_1101-2020_01_28_923532 711 10 ( ( -LRB- 10_1101-2020_01_28_923532 711 11 CEACAM5)-specific CEACAM5)-specific NNP 10_1101-2020_01_28_923532 711 12 CAR car NN 10_1101-2020_01_28_923532 711 13 T t NN 10_1101-2020_01_28_923532 711 14 cells cell NNS 10_1101-2020_01_28_923532 711 15 is be VBZ 10_1101-2020_01_28_923532 711 16 limited limit VBN 10_1101-2020_01_28_923532 711 17 by by IN 10_1101-2020_01_28_923532 711 18 poor poor JJ 10_1101-2020_01_28_923532 711 19 persistence persistence NN 10_1101-2020_01_28_923532 711 20 and and CC 10_1101-2020_01_28_923532 711 21 transient transient JJ 10_1101-2020_01_28_923532 711 22 pre- pre- NN 10_1101-2020_01_28_923532 711 23 conditioning conditioning NN 10_1101-2020_01_28_923532 711 24 - - HYPH 10_1101-2020_01_28_923532 711 25 dependent dependent JJ 10_1101-2020_01_28_923532 711 26 respiratory respiratory JJ 10_1101-2020_01_28_923532 711 27 toxicity toxicity NN 10_1101-2020_01_28_923532 711 28 . . . 10_1101-2020_01_28_923532 712 1 Cancer Cancer NNP 10_1101-2020_01_28_923532 712 2 Immunol Immunol NNP 10_1101-2020_01_28_923532 712 3 . . . 10_1101-2020_01_28_923532 713 1 Immunother immunother NN 10_1101-2020_01_28_923532 713 2 . . . 10_1101-2020_01_28_923532 714 1 66(11):1425- 66(11):1425- CD 10_1101-2020_01_28_923532 714 2 1436 1436 CD 10_1101-2020_01_28_923532 714 3 ( ( -LRB- 10_1101-2020_01_28_923532 714 4 2017 2017 CD 10_1101-2020_01_28_923532 714 5 ) ) -RRB- 10_1101-2020_01_28_923532 714 6 . . . 10_1101-2020_01_28_923532 715 1 29 29 CD 10_1101-2020_01_28_923532 715 2 . . . 10_1101-2020_01_28_923532 716 1 Fedorov Fedorov NNP 10_1101-2020_01_28_923532 716 2 , , , 10_1101-2020_01_28_923532 716 3 V.D. V.D. NNP 10_1101-2020_01_28_923532 716 4 , , , 10_1101-2020_01_28_923532 716 5 Themeli Themeli NNP 10_1101-2020_01_28_923532 716 6 , , , 10_1101-2020_01_28_923532 716 7 M. M. NNP 10_1101-2020_01_28_923532 716 8 , , , 10_1101-2020_01_28_923532 716 9 Sadelain Sadelain NNP 10_1101-2020_01_28_923532 716 10 , , , 10_1101-2020_01_28_923532 716 11 M. M. NNP 10_1101-2020_01_28_923532 716 12 PD-1- PD-1- NNP 10_1101-2020_01_28_923532 716 13 and and CC 10_1101-2020_01_28_923532 716 14 CTLA-4-based ctla-4-base VBD 10_1101-2020_01_28_923532 716 15 inhibitory inhibitory NNP 10_1101-2020_01_28_923532 716 16 chimeric chimeric NNP 10_1101-2020_01_28_923532 716 17 antigen antigen NNP 10_1101-2020_01_28_923532 716 18 receptors receptors NNP 10_1101-2020_01_28_923532 716 19 ( ( -LRB- 10_1101-2020_01_28_923532 716 20 iCARs iCARs NNP 10_1101-2020_01_28_923532 716 21 ) ) -RRB- 10_1101-2020_01_28_923532 716 22 divert divert VB 10_1101-2020_01_28_923532 716 23 off off IN 10_1101-2020_01_28_923532 716 24 - - HYPH 10_1101-2020_01_28_923532 716 25 target target NN 10_1101-2020_01_28_923532 716 26 immunotherapy immunotherapy NN 10_1101-2020_01_28_923532 716 27 responses response NNS 10_1101-2020_01_28_923532 716 28 . . . 10_1101-2020_01_28_923532 717 1 Sci Sci NNP 10_1101-2020_01_28_923532 717 2 . . . 10_1101-2020_01_28_923532 718 1 Transl Transl NNP 10_1101-2020_01_28_923532 718 2 . . . 10_1101-2020_01_28_923532 719 1 Med Med NNP 10_1101-2020_01_28_923532 719 2 . . . 10_1101-2020_01_28_923532 720 1 5(215):215ra172 5(215):215ra172 CD 10_1101-2020_01_28_923532 720 2 ( ( -LRB- 10_1101-2020_01_28_923532 720 3 2013 2013 CD 10_1101-2020_01_28_923532 720 4 ) ) -RRB- 10_1101-2020_01_28_923532 720 5 . . . 10_1101-2020_01_28_923532 721 1 30 30 CD 10_1101-2020_01_28_923532 721 2 . . . 10_1101-2020_01_28_923532 722 1 Grada Grada NNP 10_1101-2020_01_28_923532 722 2 , , , 10_1101-2020_01_28_923532 722 3 Z. Z. NNP 10_1101-2020_01_28_923532 722 4 , , , 10_1101-2020_01_28_923532 722 5 et et NNP 10_1101-2020_01_28_923532 722 6 al al NNP 10_1101-2020_01_28_923532 722 7 . . . 10_1101-2020_01_28_923532 723 1 TanCAR tancar XX 10_1101-2020_01_28_923532 723 2 : : : 10_1101-2020_01_28_923532 723 3 A a DT 10_1101-2020_01_28_923532 723 4 novel novel JJ 10_1101-2020_01_28_923532 723 5 bispecific bispecific NN 10_1101-2020_01_28_923532 723 6 chimeric chimeric NNP 10_1101-2020_01_28_923532 723 7 antigen antigen NNP 10_1101-2020_01_28_923532 723 8 receptor receptor NN 10_1101-2020_01_28_923532 723 9 for for IN 10_1101-2020_01_28_923532 723 10 cancer cancer NN 10_1101-2020_01_28_923532 723 11 immunotherapy immunotherapy NN 10_1101-2020_01_28_923532 723 12 . . . 10_1101-2020_01_28_923532 724 1 Mol Mol NNP 10_1101-2020_01_28_923532 724 2 . . . 10_1101-2020_01_28_923532 725 1 Ther ther RB 10_1101-2020_01_28_923532 725 2 . . . 10_1101-2020_01_28_923532 726 1 Nucl Nucl NNP 10_1101-2020_01_28_923532 726 2 . . . 10_1101-2020_01_28_923532 727 1 Acids acid NNS 10_1101-2020_01_28_923532 727 2 2 2 CD 10_1101-2020_01_28_923532 727 3 : : : 10_1101-2020_01_28_923532 727 4 e105 e105 NNP 10_1101-2020_01_28_923532 727 5 ( ( -LRB- 10_1101-2020_01_28_923532 727 6 2013 2013 CD 10_1101-2020_01_28_923532 727 7 ) ) -RRB- 10_1101-2020_01_28_923532 727 8 . . . 10_1101-2020_01_28_923532 728 1 31 31 CD 10_1101-2020_01_28_923532 728 2 . . . 10_1101-2020_01_28_923532 729 1 Hegde Hegde NNP 10_1101-2020_01_28_923532 729 2 , , , 10_1101-2020_01_28_923532 729 3 M. M. NNP 10_1101-2020_01_28_923532 729 4 , , , 10_1101-2020_01_28_923532 729 5 et et NNP 10_1101-2020_01_28_923532 729 6 al al NNP 10_1101-2020_01_28_923532 729 7 . . . 10_1101-2020_01_28_923532 730 1 Combinational combinational JJ 10_1101-2020_01_28_923532 730 2 targeting targeting NN 10_1101-2020_01_28_923532 730 3 offsets offset VBZ 10_1101-2020_01_28_923532 730 4 antigen antigen NNP 10_1101-2020_01_28_923532 730 5 escape escape NNP 10_1101-2020_01_28_923532 730 6 and and CC 10_1101-2020_01_28_923532 730 7 enhances enhance VBZ 10_1101-2020_01_28_923532 730 8 effector effector NN 10_1101-2020_01_28_923532 730 9 function function NN 10_1101-2020_01_28_923532 730 10 of of IN 10_1101-2020_01_28_923532 730 11 adoptively adoptively RB 10_1101-2020_01_28_923532 730 12 transferred transfer VBN 10_1101-2020_01_28_923532 730 13 T T NNP 10_1101-2020_01_28_923532 730 14 cells cell NNS 10_1101-2020_01_28_923532 730 15 in in IN 10_1101-2020_01_28_923532 730 16 glioblastoma glioblastoma NNP 10_1101-2020_01_28_923532 730 17 . . . 10_1101-2020_01_28_923532 731 1 Mol Mol NNP 10_1101-2020_01_28_923532 731 2 . . . 10_1101-2020_01_28_923532 732 1 Ther ther RB 10_1101-2020_01_28_923532 732 2 . . . 10_1101-2020_01_28_923532 733 1 21(11):2087 21(11):2087 LS 10_1101-2020_01_28_923532 733 2 - - SYM 10_1101-2020_01_28_923532 733 3 2101 2101 CD 10_1101-2020_01_28_923532 733 4 ( ( -LRB- 10_1101-2020_01_28_923532 733 5 2013 2013 CD 10_1101-2020_01_28_923532 733 6 ) ) -RRB- 10_1101-2020_01_28_923532 733 7 . . . 10_1101-2020_01_28_923532 734 1 32 32 CD 10_1101-2020_01_28_923532 734 2 . . . 10_1101-2020_01_28_923532 735 1 Roybal Roybal NNP 10_1101-2020_01_28_923532 735 2 , , , 10_1101-2020_01_28_923532 735 3 K.T. K.T. NNP 10_1101-2020_01_28_923532 735 4 , , , 10_1101-2020_01_28_923532 735 5 et et NNP 10_1101-2020_01_28_923532 735 6 al al NNP 10_1101-2020_01_28_923532 735 7 . . . 10_1101-2020_01_28_923532 736 1 Engineering engineer VBG 10_1101-2020_01_28_923532 736 2 T t NN 10_1101-2020_01_28_923532 736 3 cells cell NNS 10_1101-2020_01_28_923532 736 4 with with IN 10_1101-2020_01_28_923532 736 5 customized customized JJ 10_1101-2020_01_28_923532 736 6 therapeutic therapeutic JJ 10_1101-2020_01_28_923532 736 7 response response NN 10_1101-2020_01_28_923532 736 8 using use VBG 10_1101-2020_01_28_923532 736 9 synthetic synthetic JJ 10_1101-2020_01_28_923532 736 10 Notch Notch NNP 10_1101-2020_01_28_923532 736 11 receptors receptor NNS 10_1101-2020_01_28_923532 736 12 . . . 10_1101-2020_01_28_923532 737 1 Cell Cell NNP 10_1101-2020_01_28_923532 737 2 167(2):419 167(2):419 NNP 10_1101-2020_01_28_923532 737 3 - - HYPH 10_1101-2020_01_28_923532 737 4 43.e16 43.e16 CD 10_1101-2020_01_28_923532 737 5 ( ( -LRB- 10_1101-2020_01_28_923532 737 6 2016 2016 CD 10_1101-2020_01_28_923532 737 7 ) ) -RRB- 10_1101-2020_01_28_923532 737 8 . . . 10_1101-2020_01_28_923532 738 1 33 33 CD 10_1101-2020_01_28_923532 738 2 . . . 10_1101-2020_01_28_923532 739 1 Williams Williams NNP 10_1101-2020_01_28_923532 739 2 , , , 10_1101-2020_01_28_923532 739 3 J.Z. J.Z. NNP 10_1101-2020_01_28_923532 739 4 , , , 10_1101-2020_01_28_923532 739 5 et et NNP 10_1101-2020_01_28_923532 739 6 al al NNP 10_1101-2020_01_28_923532 739 7 . . . 10_1101-2020_01_28_923532 740 1 Precise precise JJ 10_1101-2020_01_28_923532 740 2 T T NNP 10_1101-2020_01_28_923532 740 3 cell cell NN 10_1101-2020_01_28_923532 740 4 recognition recognition NN 10_1101-2020_01_28_923532 740 5 programs program NNS 10_1101-2020_01_28_923532 740 6 designed design VBN 10_1101-2020_01_28_923532 740 7 by by IN 10_1101-2020_01_28_923532 740 8 transcriptionally transcriptionally RB 10_1101-2020_01_28_923532 740 9 linking link VBG 10_1101-2020_01_28_923532 740 10 multiple multiple JJ 10_1101-2020_01_28_923532 740 11 receptors receptor NNS 10_1101-2020_01_28_923532 740 12 . . . 10_1101-2020_01_28_923532 741 1 Science Science NNP 10_1101-2020_01_28_923532 741 2 370(6520):1099 370(6520):1099 CD 10_1101-2020_01_28_923532 741 3 - - HYPH 10_1101-2020_01_28_923532 741 4 1104 1104 CD 10_1101-2020_01_28_923532 741 5 ( ( -LRB- 10_1101-2020_01_28_923532 741 6 2020 2020 CD 10_1101-2020_01_28_923532 741 7 ) ) -RRB- 10_1101-2020_01_28_923532 741 8 . . . 10_1101-2020_01_28_923532 742 1 34 34 CD 10_1101-2020_01_28_923532 742 2 . . . 10_1101-2020_01_28_923532 743 1 Říhová Říhová NNP 10_1101-2020_01_28_923532 743 2 , , , 10_1101-2020_01_28_923532 743 3 B. B. NNP 10_1101-2020_01_28_923532 743 4 Receptor Receptor NNP 10_1101-2020_01_28_923532 743 5 - - HYPH 10_1101-2020_01_28_923532 743 6 mediated mediate VBN 10_1101-2020_01_28_923532 743 7 targeted target VBD 10_1101-2020_01_28_923532 743 8 drug drug NN 10_1101-2020_01_28_923532 743 9 or or CC 10_1101-2020_01_28_923532 743 10 toxin toxin NN 10_1101-2020_01_28_923532 743 11 delivery delivery NN 10_1101-2020_01_28_923532 743 12 . . . 10_1101-2020_01_28_923532 744 1 Adv Adv NNP 10_1101-2020_01_28_923532 744 2 . . . 10_1101-2020_01_28_923532 745 1 Drug Drug NNP 10_1101-2020_01_28_923532 745 2 Deliv Deliv NNP 10_1101-2020_01_28_923532 745 3 . . . 10_1101-2020_01_28_923532 746 1 Rev. Rev. NNP 10_1101-2020_01_28_923532 747 1 29(3 29(3 LS 10_1101-2020_01_28_923532 747 2 ) ) -RRB- 10_1101-2020_01_28_923532 747 3 , , , 10_1101-2020_01_28_923532 747 4 273 273 CD 10_1101-2020_01_28_923532 747 5 - - SYM 10_1101-2020_01_28_923532 747 6 289 289 CD 10_1101-2020_01_28_923532 747 7 ( ( -LRB- 10_1101-2020_01_28_923532 747 8 1998 1998 CD 10_1101-2020_01_28_923532 747 9 ) ) -RRB- 10_1101-2020_01_28_923532 747 10 . . . 10_1101-2020_01_28_923532 748 1 35 35 CD 10_1101-2020_01_28_923532 748 2 . . . 10_1101-2020_01_28_923532 749 1 Tortorella Tortorella NNP 10_1101-2020_01_28_923532 749 2 , , , 10_1101-2020_01_28_923532 749 3 S. S. NNP 10_1101-2020_01_28_923532 749 4 & & CC 10_1101-2020_01_28_923532 749 5 Karagiannis Karagiannis NNP 10_1101-2020_01_28_923532 749 6 , , , 10_1101-2020_01_28_923532 749 7 T.C. T.C. NNP 10_1101-2020_01_28_923532 750 1 Transferrin Transferrin NNP 10_1101-2020_01_28_923532 750 2 receptor receptor NN 10_1101-2020_01_28_923532 750 3 - - HYPH 10_1101-2020_01_28_923532 750 4 mediated mediate VBN 10_1101-2020_01_28_923532 750 5 endocytosis endocytosis NN 10_1101-2020_01_28_923532 750 6 : : : 10_1101-2020_01_28_923532 750 7 a a DT 10_1101-2020_01_28_923532 750 8 useful useful JJ 10_1101-2020_01_28_923532 750 9 target target NN 10_1101-2020_01_28_923532 750 10 for for IN 10_1101-2020_01_28_923532 750 11 cancer cancer NN 10_1101-2020_01_28_923532 750 12 therapy therapy NN 10_1101-2020_01_28_923532 750 13 . . . 10_1101-2020_01_28_923532 751 1 J. J. NNP 10_1101-2020_01_28_923532 751 2 Membr Membr NNP 10_1101-2020_01_28_923532 751 3 . . . 10_1101-2020_01_28_923532 752 1 Biol Biol NNP 10_1101-2020_01_28_923532 752 2 . . . 10_1101-2020_01_28_923532 753 1 247(4 247(4 CD 10_1101-2020_01_28_923532 753 2 ) ) -RRB- 10_1101-2020_01_28_923532 753 3 , , , 10_1101-2020_01_28_923532 753 4 291 291 CD 10_1101-2020_01_28_923532 753 5 - - SYM 10_1101-2020_01_28_923532 753 6 307 307 CD 10_1101-2020_01_28_923532 753 7 ( ( -LRB- 10_1101-2020_01_28_923532 753 8 2014 2014 CD 10_1101-2020_01_28_923532 753 9 ) ) -RRB- 10_1101-2020_01_28_923532 753 10 . . . 10_1101-2020_01_28_923532 754 1 36 36 CD 10_1101-2020_01_28_923532 754 2 . . . 10_1101-2020_01_28_923532 755 1 Karp Karp NNP 10_1101-2020_01_28_923532 755 2 , , , 10_1101-2020_01_28_923532 755 3 R.M. R.M. NNP 10_1101-2020_01_28_923532 756 1 Reducibility reducibility NN 10_1101-2020_01_28_923532 756 2 among among IN 10_1101-2020_01_28_923532 756 3 combinatorial combinatorial JJ 10_1101-2020_01_28_923532 756 4 problems problem NNS 10_1101-2020_01_28_923532 756 5 . . . 10_1101-2020_01_28_923532 757 1 In in IN 10_1101-2020_01_28_923532 757 2 Complexity complexity NN 10_1101-2020_01_28_923532 757 3 of of IN 10_1101-2020_01_28_923532 757 4 Computer Computer NNP 10_1101-2020_01_28_923532 757 5 Computations Computations NNPS 10_1101-2020_01_28_923532 757 6 , , , 10_1101-2020_01_28_923532 757 7 pp pp NNP 10_1101-2020_01_28_923532 757 8 . . . 10_1101-2020_01_28_923532 758 1 85 85 CD 10_1101-2020_01_28_923532 758 2 - - SYM 10_1101-2020_01_28_923532 758 3 103 103 CD 10_1101-2020_01_28_923532 758 4 ( ( -LRB- 10_1101-2020_01_28_923532 758 5 Plenum Plenum NNP 10_1101-2020_01_28_923532 758 6 Press Press NNP 10_1101-2020_01_28_923532 758 7 , , , 10_1101-2020_01_28_923532 758 8 New New NNP 10_1101-2020_01_28_923532 758 9 York York NNP 10_1101-2020_01_28_923532 758 10 , , , 10_1101-2020_01_28_923532 758 11 1972 1972 CD 10_1101-2020_01_28_923532 758 12 ) ) -RRB- 10_1101-2020_01_28_923532 758 13 . . . 10_1101-2020_01_28_923532 759 1 37 37 CD 10_1101-2020_01_28_923532 759 2 . . . 10_1101-2020_01_28_923532 760 1 Martinez Martinez NNP 10_1101-2020_01_28_923532 760 2 - - HYPH 10_1101-2020_01_28_923532 760 3 Veracoechea Veracoechea NNP 10_1101-2020_01_28_923532 760 4 , , , 10_1101-2020_01_28_923532 760 5 F.J. F.J. NNP 10_1101-2020_01_28_923532 760 6 & & CC 10_1101-2020_01_28_923532 760 7 Frenkel Frenkel NNP 10_1101-2020_01_28_923532 760 8 , , , 10_1101-2020_01_28_923532 760 9 D. D. NNP 10_1101-2020_01_28_923532 760 10 Designing Designing NNP 10_1101-2020_01_28_923532 760 11 super super JJ 10_1101-2020_01_28_923532 760 12 selectivity selectivity NN 10_1101-2020_01_28_923532 760 13 in in IN 10_1101-2020_01_28_923532 760 14 multivalent multivalent NN 10_1101-2020_01_28_923532 760 15 nano- nano- NNP 10_1101-2020_01_28_923532 760 16 particle particle NN 10_1101-2020_01_28_923532 760 17 binding binding NN 10_1101-2020_01_28_923532 760 18 . . . 10_1101-2020_01_28_923532 761 1 Proc Proc NNP 10_1101-2020_01_28_923532 761 2 . . . 10_1101-2020_01_28_923532 762 1 Natl Natl NNP 10_1101-2020_01_28_923532 762 2 Acad Acad NNP 10_1101-2020_01_28_923532 762 3 . . . 10_1101-2020_01_28_923532 763 1 Sci Sci NNP 10_1101-2020_01_28_923532 763 2 . . . 10_1101-2020_01_28_923532 764 1 USA USA NNP 10_1101-2020_01_28_923532 764 2 108 108 CD 10_1101-2020_01_28_923532 764 3 , , , 10_1101-2020_01_28_923532 764 4 10963 10963 CD 10_1101-2020_01_28_923532 764 5 - - SYM 10_1101-2020_01_28_923532 764 6 10968 10968 CD 10_1101-2020_01_28_923532 764 7 ( ( -LRB- 10_1101-2020_01_28_923532 764 8 2011 2011 CD 10_1101-2020_01_28_923532 764 9 ) ) -RRB- 10_1101-2020_01_28_923532 764 10 . . . 10_1101-2020_01_28_923532 765 1 38 38 CD 10_1101-2020_01_28_923532 765 2 . . . 10_1101-2020_01_28_923532 766 1 Delaney Delaney NNP 10_1101-2020_01_28_923532 766 2 , , , 10_1101-2020_01_28_923532 766 3 C. C. NNP 10_1101-2020_01_28_923532 766 4 , , , 10_1101-2020_01_28_923532 766 5 et et NNP 10_1101-2020_01_28_923532 766 6 al al NNP 10_1101-2020_01_28_923532 766 7 . . . 10_1101-2020_01_28_923532 767 1 Combinatorial combinatorial JJ 10_1101-2020_01_28_923532 767 2 prediction prediction NN 10_1101-2020_01_28_923532 767 3 of of IN 10_1101-2020_01_28_923532 767 4 marker marker NN 10_1101-2020_01_28_923532 767 5 panels panel NNS 10_1101-2020_01_28_923532 767 6 from from IN 10_1101-2020_01_28_923532 767 7 single single JJ 10_1101-2020_01_28_923532 767 8 - - HYPH 10_1101-2020_01_28_923532 767 9 cell cell NN 10_1101-2020_01_28_923532 767 10 transcriptomic transcriptomic JJ 10_1101-2020_01_28_923532 767 11 data datum NNS 10_1101-2020_01_28_923532 767 12 . . . 10_1101-2020_01_28_923532 768 1 Mol Mol NNP 10_1101-2020_01_28_923532 768 2 . . . 10_1101-2020_01_28_923532 769 1 Syst Syst NNP 10_1101-2020_01_28_923532 769 2 . . . 10_1101-2020_01_28_923532 770 1 Biol Biol NNP 10_1101-2020_01_28_923532 770 2 . . . 10_1101-2020_01_28_923532 771 1 15(10 15(10 LS 10_1101-2020_01_28_923532 771 2 ) ) -RRB- 10_1101-2020_01_28_923532 771 3 , , , 10_1101-2020_01_28_923532 771 4 e9005 e9005 NNP 10_1101-2020_01_28_923532 771 5 ( ( -LRB- 10_1101-2020_01_28_923532 771 6 2019 2019 CD 10_1101-2020_01_28_923532 771 7 ) ) -RRB- 10_1101-2020_01_28_923532 771 8 . . . 10_1101-2020_01_28_923532 772 1 39 39 CD 10_1101-2020_01_28_923532 772 2 . . . 10_1101-2020_01_28_923532 773 1 Müller Müller NNP 10_1101-2020_01_28_923532 773 2 , , , 10_1101-2020_01_28_923532 773 3 S. S. NNP 10_1101-2020_01_28_923532 773 4 , , , 10_1101-2020_01_28_923532 773 5 et et NNP 10_1101-2020_01_28_923532 773 6 al al NNP 10_1101-2020_01_28_923532 773 7 . . . 10_1101-2020_01_28_923532 774 1 A a DT 10_1101-2020_01_28_923532 774 2 role role NN 10_1101-2020_01_28_923532 774 3 for for IN 10_1101-2020_01_28_923532 774 4 receptor receptor NN 10_1101-2020_01_28_923532 774 5 tyrosine tyrosine NN 10_1101-2020_01_28_923532 774 6 phosphatase phosphatase NNP 10_1101-2020_01_28_923532 774 7 zeta zeta NNP 10_1101-2020_01_28_923532 774 8 in in IN 10_1101-2020_01_28_923532 774 9 glioma glioma NNP 10_1101-2020_01_28_923532 774 10 cell cell NN 10_1101-2020_01_28_923532 774 11 migration migration NN 10_1101-2020_01_28_923532 774 12 . . . 10_1101-2020_01_28_923532 775 1 Oncogene oncogene NN 10_1101-2020_01_28_923532 775 2 22(43 22(43 CD 10_1101-2020_01_28_923532 775 3 ) ) -RRB- 10_1101-2020_01_28_923532 775 4 , , , 10_1101-2020_01_28_923532 775 5 661 661 CD 10_1101-2020_01_28_923532 775 6 - - SYM 10_1101-2020_01_28_923532 775 7 668 668 CD 10_1101-2020_01_28_923532 775 8 ( ( -LRB- 10_1101-2020_01_28_923532 775 9 2003 2003 CD 10_1101-2020_01_28_923532 775 10 ) ) -RRB- 10_1101-2020_01_28_923532 775 11 . . . 10_1101-2020_01_28_923532 776 1 40 40 CD 10_1101-2020_01_28_923532 776 2 . . . 10_1101-2020_01_28_923532 777 1 Ulbricht Ulbricht NNP 10_1101-2020_01_28_923532 777 2 , , , 10_1101-2020_01_28_923532 777 3 U. U. NNP 10_1101-2020_01_28_923532 777 4 et et NNP 10_1101-2020_01_28_923532 777 5 al al NNP 10_1101-2020_01_28_923532 777 6 . . . 10_1101-2020_01_28_923532 778 1 Expression expression NN 10_1101-2020_01_28_923532 778 2 and and CC 10_1101-2020_01_28_923532 778 3 function function NN 10_1101-2020_01_28_923532 778 4 of of IN 10_1101-2020_01_28_923532 778 5 the the DT 10_1101-2020_01_28_923532 778 6 receptor receptor NN 10_1101-2020_01_28_923532 778 7 protein protein NN 10_1101-2020_01_28_923532 778 8 tyrosine tyrosine NNP 10_1101-2020_01_28_923532 778 9 phosphatase phosphatase NNP 10_1101-2020_01_28_923532 778 10 zeta zeta NNP 10_1101-2020_01_28_923532 778 11 and and CC 10_1101-2020_01_28_923532 778 12 its -PRON- PRP$ 10_1101-2020_01_28_923532 778 13 ligand ligand NN 10_1101-2020_01_28_923532 778 14 pleiotrophin pleiotrophin NN 10_1101-2020_01_28_923532 778 15 in in IN 10_1101-2020_01_28_923532 778 16 human human JJ 10_1101-2020_01_28_923532 778 17 astrocytomas astrocytoma NNS 10_1101-2020_01_28_923532 778 18 . . . 10_1101-2020_01_28_923532 779 1 J. J. NNP 10_1101-2020_01_28_923532 779 2 Neuropathol Neuropathol NNP 10_1101-2020_01_28_923532 779 3 . . . 10_1101-2020_01_28_923532 780 1 Exp Exp NNP 10_1101-2020_01_28_923532 780 2 . . . 10_1101-2020_01_28_923532 781 1 Neurol Neurol NNP 10_1101-2020_01_28_923532 781 2 . . . 10_1101-2020_01_28_923532 782 1 62(12 62(12 LS 10_1101-2020_01_28_923532 782 2 ) ) -RRB- 10_1101-2020_01_28_923532 782 3 , , , 10_1101-2020_01_28_923532 782 4 1265 1265 CD 10_1101-2020_01_28_923532 782 5 - - SYM 10_1101-2020_01_28_923532 782 6 1275 1275 CD 10_1101-2020_01_28_923532 782 7 ( ( -LRB- 10_1101-2020_01_28_923532 782 8 2003 2003 CD 10_1101-2020_01_28_923532 782 9 ) ) -RRB- 10_1101-2020_01_28_923532 782 10 . . . 10_1101-2020_01_28_923532 783 1 105 105 CD 10_1101-2020_01_28_923532 783 2 and and CC 10_1101-2020_01_28_923532 783 3 is be VBZ 10_1101-2020_01_28_923532 783 4 also also RB 10_1101-2020_01_28_923532 783 5 made make VBN 10_1101-2020_01_28_923532 783 6 available available JJ 10_1101-2020_01_28_923532 783 7 for for IN 10_1101-2020_01_28_923532 783 8 use use NN 10_1101-2020_01_28_923532 783 9 under under IN 10_1101-2020_01_28_923532 783 10 a a DT 10_1101-2020_01_28_923532 783 11 CC0 CC0 NNP 10_1101-2020_01_28_923532 783 12 license license NN 10_1101-2020_01_28_923532 783 13 . . . 10_1101-2020_01_28_923532 784 1 ( ( -LRB- 10_1101-2020_01_28_923532 784 2 which which WDT 10_1101-2020_01_28_923532 784 3 was be VBD 10_1101-2020_01_28_923532 784 4 not not RB 10_1101-2020_01_28_923532 784 5 certified certify VBN 10_1101-2020_01_28_923532 784 6 by by IN 10_1101-2020_01_28_923532 784 7 peer peer NN 10_1101-2020_01_28_923532 784 8 review review NN 10_1101-2020_01_28_923532 784 9 ) ) -RRB- 10_1101-2020_01_28_923532 784 10 is be VBZ 10_1101-2020_01_28_923532 784 11 the the DT 10_1101-2020_01_28_923532 784 12 author author NN 10_1101-2020_01_28_923532 784 13 / / SYM 10_1101-2020_01_28_923532 784 14 funder funder NN 10_1101-2020_01_28_923532 784 15 . . . 10_1101-2020_01_28_923532 785 1 This this DT 10_1101-2020_01_28_923532 785 2 article article NN 10_1101-2020_01_28_923532 785 3 is be VBZ 10_1101-2020_01_28_923532 785 4 a a DT 10_1101-2020_01_28_923532 785 5 US US NNP 10_1101-2020_01_28_923532 785 6 Government Government NNP 10_1101-2020_01_28_923532 785 7 work work NN 10_1101-2020_01_28_923532 785 8 . . . 10_1101-2020_01_28_923532 786 1 It -PRON- PRP 10_1101-2020_01_28_923532 786 2 is be VBZ 10_1101-2020_01_28_923532 786 3 not not RB 10_1101-2020_01_28_923532 786 4 subject subject JJ 10_1101-2020_01_28_923532 786 5 to to IN 10_1101-2020_01_28_923532 786 6 copyright copyright NN 10_1101-2020_01_28_923532 786 7 under under IN 10_1101-2020_01_28_923532 786 8 17 17 CD 10_1101-2020_01_28_923532 786 9 USC usc NN 10_1101-2020_01_28_923532 786 10 The the DT 10_1101-2020_01_28_923532 786 11 copyright copyright NN 10_1101-2020_01_28_923532 786 12 holder holder NN 10_1101-2020_01_28_923532 786 13 for for IN 10_1101-2020_01_28_923532 786 14 this this DT 10_1101-2020_01_28_923532 786 15 preprintthis preprintthis NN 10_1101-2020_01_28_923532 786 16 version version NN 10_1101-2020_01_28_923532 786 17 posted post VBD 10_1101-2020_01_28_923532 786 18 February February NNP 10_1101-2020_01_28_923532 786 19 12 12 CD 10_1101-2020_01_28_923532 786 20 , , , 10_1101-2020_01_28_923532 786 21 2021 2021 CD 10_1101-2020_01_28_923532 786 22 . . . 10_1101-2020_01_28_923532 786 23 ; ; : 10_1101-2020_01_28_923532 786 24 https://doi.org/10.1101/2020.01.28.923532doi https://doi.org/10.1101/2020.01.28.923532doi ADD 10_1101-2020_01_28_923532 786 25 : : : 10_1101-2020_01_28_923532 786 26 bioRxiv biorxiv VB 10_1101-2020_01_28_923532 786 27 preprint preprint NN 10_1101-2020_01_28_923532 786 28 https://doi.org/10.1101/2020.01.28.923532 https://doi.org/10.1101/2020.01.28.923532 PRP 10_1101-2020_01_28_923532 786 29 44 44 CD 10_1101-2020_01_28_923532 786 30 41 41 CD 10_1101-2020_01_28_923532 786 31 . . . 10_1101-2020_01_28_923532 787 1 Chen Chen NNP 10_1101-2020_01_28_923532 787 2 , , , 10_1101-2020_01_28_923532 787 3 H.M. H.M. NNP 10_1101-2020_01_28_923532 787 4 , , , 10_1101-2020_01_28_923532 787 5 et et NNP 10_1101-2020_01_28_923532 787 6 al al NNP 10_1101-2020_01_28_923532 787 7 . . . 10_1101-2020_01_28_923532 788 1 Enhanced enhance VBN 10_1101-2020_01_28_923532 788 2 expression expression NN 10_1101-2020_01_28_923532 788 3 and and CC 10_1101-2020_01_28_923532 788 4 phosphorylation phosphorylation NN 10_1101-2020_01_28_923532 788 5 of of IN 10_1101-2020_01_28_923532 788 6 the the DT 10_1101-2020_01_28_923532 788 7 MET MET NNP 10_1101-2020_01_28_923532 788 8 oncoprotein oncoprotein RB 10_1101-2020_01_28_923532 788 9 by by IN 10_1101-2020_01_28_923532 788 10 glioma glioma NNP 10_1101-2020_01_28_923532 788 11 - - HYPH 10_1101-2020_01_28_923532 788 12 specific specific JJ 10_1101-2020_01_28_923532 788 13 PTPRZ1-MET ptprz1-met JJ 10_1101-2020_01_28_923532 788 14 fusions fusion NNS 10_1101-2020_01_28_923532 788 15 . . . 10_1101-2020_01_28_923532 789 1 FEBS FEBS NNP 10_1101-2020_01_28_923532 789 2 Lett Lett NNP 10_1101-2020_01_28_923532 789 3 . . . 10_1101-2020_01_28_923532 790 1 589(13):1437 589(13):1437 CD 10_1101-2020_01_28_923532 790 2 - - HYPH 10_1101-2020_01_28_923532 790 3 1443 1443 CD 10_1101-2020_01_28_923532 790 4 ( ( -LRB- 10_1101-2020_01_28_923532 790 5 2015 2015 CD 10_1101-2020_01_28_923532 790 6 ) ) -RRB- 10_1101-2020_01_28_923532 790 7 . . . 10_1101-2020_01_28_923532 791 1 42 42 CD 10_1101-2020_01_28_923532 791 2 . . . 10_1101-2020_01_28_923532 792 1 Ulbricht Ulbricht NNP 10_1101-2020_01_28_923532 792 2 , , , 10_1101-2020_01_28_923532 792 3 U. U. NNP 10_1101-2020_01_28_923532 792 4 , , , 10_1101-2020_01_28_923532 792 5 Eckerich Eckerich NNP 10_1101-2020_01_28_923532 792 6 , , , 10_1101-2020_01_28_923532 792 7 C. C. NNP 10_1101-2020_01_28_923532 792 8 , , , 10_1101-2020_01_28_923532 792 9 Fillbrandt Fillbrandt NNP 10_1101-2020_01_28_923532 792 10 , , , 10_1101-2020_01_28_923532 792 11 R. R. NNP 10_1101-2020_01_28_923532 792 12 , , , 10_1101-2020_01_28_923532 792 13 Westphal Westphal NNP 10_1101-2020_01_28_923532 792 14 , , , 10_1101-2020_01_28_923532 792 15 M. M. NNP 10_1101-2020_01_28_923532 792 16 & & CC 10_1101-2020_01_28_923532 792 17 Lamszus Lamszus NNP 10_1101-2020_01_28_923532 792 18 , , , 10_1101-2020_01_28_923532 792 19 K. K. NNP 10_1101-2020_01_28_923532 792 20 RNA RNA NNP 10_1101-2020_01_28_923532 792 21 interference interference NN 10_1101-2020_01_28_923532 792 22 targeting target VBG 10_1101-2020_01_28_923532 792 23 protein protein NN 10_1101-2020_01_28_923532 792 24 tyrosine tyrosine NN 10_1101-2020_01_28_923532 792 25 phosphatase phosphatase NNP 10_1101-2020_01_28_923532 792 26 zeta zeta NNP 10_1101-2020_01_28_923532 792 27 / / SYM 10_1101-2020_01_28_923532 792 28 receptor receptor NN 10_1101-2020_01_28_923532 792 29 - - HYPH 10_1101-2020_01_28_923532 792 30 type type NN 10_1101-2020_01_28_923532 792 31 protein protein NN 10_1101-2020_01_28_923532 792 32 tyrosine tyrosine NN 10_1101-2020_01_28_923532 792 33 phosphatase phosphatase NN 10_1101-2020_01_28_923532 792 34 beta beta NN 10_1101-2020_01_28_923532 792 35 suppresses suppresse NNS 10_1101-2020_01_28_923532 792 36 glioblastoma glioblastoma NN 10_1101-2020_01_28_923532 792 37 growth growth NN 10_1101-2020_01_28_923532 792 38 in in IN 10_1101-2020_01_28_923532 792 39 vitro vitro FW 10_1101-2020_01_28_923532 792 40 and and CC 10_1101-2020_01_28_923532 792 41 in in IN 10_1101-2020_01_28_923532 792 42 vivo vivo NNP 10_1101-2020_01_28_923532 792 43 . . . 10_1101-2020_01_28_923532 793 1 J. J. NNP 10_1101-2020_01_28_923532 793 2 Neurochem Neurochem NNP 10_1101-2020_01_28_923532 793 3 . . . 10_1101-2020_01_28_923532 794 1 98 98 CD 10_1101-2020_01_28_923532 794 2 , , , 10_1101-2020_01_28_923532 794 3 1497–1506 1497–1506 CD 10_1101-2020_01_28_923532 794 4 ( ( -LRB- 10_1101-2020_01_28_923532 794 5 2006 2006 CD 10_1101-2020_01_28_923532 794 6 ) ) -RRB- 10_1101-2020_01_28_923532 794 7 . . . 10_1101-2020_01_28_923532 795 1 43 43 CD 10_1101-2020_01_28_923532 795 2 . . . 10_1101-2020_01_28_923532 796 1 Bourgonje bourgonje JJ 10_1101-2020_01_28_923532 796 2 . . . 10_1101-2020_01_28_923532 797 1 A.M. A.M. NNP 10_1101-2020_01_28_923532 797 2 , , , 10_1101-2020_01_28_923532 797 3 et et NNP 10_1101-2020_01_28_923532 797 4 al al NNP 10_1101-2020_01_28_923532 797 5 . . . 10_1101-2020_01_28_923532 798 1 Intracellular Intracellular NNP 10_1101-2020_01_28_923532 798 2 and and CC 10_1101-2020_01_28_923532 798 3 extracellular extracellular JJ 10_1101-2020_01_28_923532 798 4 domains domain NNS 10_1101-2020_01_28_923532 798 5 of of IN 10_1101-2020_01_28_923532 798 6 protein protein NN 10_1101-2020_01_28_923532 798 7 tyrosine tyrosine NN 10_1101-2020_01_28_923532 798 8 phosphatase phosphatase NNP 10_1101-2020_01_28_923532 798 9 PTPRZ PTPRZ NNP 10_1101-2020_01_28_923532 798 10 - - HYPH 10_1101-2020_01_28_923532 798 11 B B NNP 10_1101-2020_01_28_923532 798 12 differentially differentially RB 10_1101-2020_01_28_923532 798 13 regulate regulate VB 10_1101-2020_01_28_923532 798 14 glioma glioma NNP 10_1101-2020_01_28_923532 798 15 cell cell NN 10_1101-2020_01_28_923532 798 16 growth growth NN 10_1101-2020_01_28_923532 798 17 and and CC 10_1101-2020_01_28_923532 798 18 motility motility NN 10_1101-2020_01_28_923532 798 19 . . . 10_1101-2020_01_28_923532 799 1 Oncotarget Oncotarget NNP 10_1101-2020_01_28_923532 799 2 5(18 5(18 NNP 10_1101-2020_01_28_923532 799 3 ) ) -RRB- 10_1101-2020_01_28_923532 799 4 , , , 10_1101-2020_01_28_923532 799 5 8690 8690 CD 10_1101-2020_01_28_923532 799 6 - - SYM 10_1101-2020_01_28_923532 799 7 8702 8702 CD 10_1101-2020_01_28_923532 799 8 ( ( -LRB- 10_1101-2020_01_28_923532 799 9 2014 2014 CD 10_1101-2020_01_28_923532 799 10 ) ) -RRB- 10_1101-2020_01_28_923532 799 11 . . . 10_1101-2020_01_28_923532 800 1 44 44 CD 10_1101-2020_01_28_923532 800 2 . . . 10_1101-2020_01_28_923532 801 1 Fujikawa Fujikawa NNP 10_1101-2020_01_28_923532 801 2 , , , 10_1101-2020_01_28_923532 801 3 A. A. NNP 10_1101-2020_01_28_923532 801 4 , , , 10_1101-2020_01_28_923532 801 5 et et NNP 10_1101-2020_01_28_923532 801 6 al al NNP 10_1101-2020_01_28_923532 801 7 . . . 10_1101-2020_01_28_923532 802 1 Targeting Targeting NNP 10_1101-2020_01_28_923532 802 2 PTPRZ PTPRZ NNP 10_1101-2020_01_28_923532 802 3 inhibits inhibit VBZ 10_1101-2020_01_28_923532 802 4 stem stem NN 10_1101-2020_01_28_923532 802 5 cell cell NN 10_1101-2020_01_28_923532 802 6 - - HYPH 10_1101-2020_01_28_923532 802 7 like like JJ 10_1101-2020_01_28_923532 802 8 properties property NNS 10_1101-2020_01_28_923532 802 9 and and CC 10_1101-2020_01_28_923532 802 10 tumorigenicity tumorigenicity NN 10_1101-2020_01_28_923532 802 11 in in IN 10_1101-2020_01_28_923532 802 12 glioblastoma glioblastoma NN 10_1101-2020_01_28_923532 802 13 cells cell NNS 10_1101-2020_01_28_923532 802 14 . . . 10_1101-2020_01_28_923532 803 1 Sci Sci NNP 10_1101-2020_01_28_923532 803 2 . . . 10_1101-2020_01_28_923532 804 1 Rep. Rep. NNP 10_1101-2020_01_28_923532 804 2 7:5609 7:5609 CD 10_1101-2020_01_28_923532 804 3 ( ( -LRB- 10_1101-2020_01_28_923532 804 4 2017 2017 CD 10_1101-2020_01_28_923532 804 5 ) ) -RRB- 10_1101-2020_01_28_923532 804 6 . . . 10_1101-2020_01_28_923532 805 1 45 45 CD 10_1101-2020_01_28_923532 805 2 . . . 10_1101-2020_01_28_923532 806 1 Pastor Pastor NNP 10_1101-2020_01_28_923532 806 2 , , , 10_1101-2020_01_28_923532 806 3 M. M. NNP 10_1101-2020_01_28_923532 806 4 , , , 10_1101-2020_01_28_923532 806 5 et et NNP 10_1101-2020_01_28_923532 806 6 al al NNP 10_1101-2020_01_28_923532 806 7 . . . 10_1101-2020_01_28_923532 807 1 Development development NN 10_1101-2020_01_28_923532 807 2 of of IN 10_1101-2020_01_28_923532 807 3 inhibitors inhibitor NNS 10_1101-2020_01_28_923532 807 4 of of IN 10_1101-2020_01_28_923532 807 5 receptor receptor NN 10_1101-2020_01_28_923532 807 6 protein protein NN 10_1101-2020_01_28_923532 807 7 tyrosine tyrosine NN 10_1101-2020_01_28_923532 807 8 phosphatase phosphatase NNP 10_1101-2020_01_28_923532 807 9 β β NNP 10_1101-2020_01_28_923532 807 10 / / SYM 10_1101-2020_01_28_923532 807 11 ζ ζ NNP 10_1101-2020_01_28_923532 807 12 ( ( -LRB- 10_1101-2020_01_28_923532 807 13 PTPRZ1 ptprz1 NN 10_1101-2020_01_28_923532 807 14 ) ) -RRB- 10_1101-2020_01_28_923532 807 15 as as IN 10_1101-2020_01_28_923532 807 16 candidates candidate NNS 10_1101-2020_01_28_923532 807 17 for for IN 10_1101-2020_01_28_923532 807 18 CNS CNS NNP 10_1101-2020_01_28_923532 807 19 disorders disorder NNS 10_1101-2020_01_28_923532 807 20 . . . 10_1101-2020_01_28_923532 808 1 Eur Eur NNP 10_1101-2020_01_28_923532 808 2 . . . 10_1101-2020_01_28_923532 809 1 J. J. NNP 10_1101-2020_01_28_923532 809 2 Med Med NNP 10_1101-2020_01_28_923532 809 3 . . . 10_1101-2020_01_28_923532 810 1 Chem Chem NNP 10_1101-2020_01_28_923532 810 2 . . . 10_1101-2020_01_28_923532 811 1 144:318 144:318 CD 10_1101-2020_01_28_923532 811 2 - - SYM 10_1101-2020_01_28_923532 811 3 329 329 CD 10_1101-2020_01_28_923532 811 4 ( ( -LRB- 10_1101-2020_01_28_923532 811 5 2018 2018 CD 10_1101-2020_01_28_923532 811 6 ) ) -RRB- 10_1101-2020_01_28_923532 811 7 . . . 10_1101-2020_01_28_923532 812 1 46 46 CD 10_1101-2020_01_28_923532 812 2 . . . 10_1101-2020_01_28_923532 813 1 Darmanis Darmanis NNP 10_1101-2020_01_28_923532 813 2 , , , 10_1101-2020_01_28_923532 813 3 S. S. NNP 10_1101-2020_01_28_923532 813 4 , , , 10_1101-2020_01_28_923532 813 5 et et NNP 10_1101-2020_01_28_923532 813 6 al al NNP 10_1101-2020_01_28_923532 813 7 . . . 10_1101-2020_01_28_923532 814 1 Single single JJ 10_1101-2020_01_28_923532 814 2 - - HYPH 10_1101-2020_01_28_923532 814 3 cell cell NN 10_1101-2020_01_28_923532 814 4 RNA RNA NNP 10_1101-2020_01_28_923532 814 5 - - HYPH 10_1101-2020_01_28_923532 814 6 Seq Seq NNP 10_1101-2020_01_28_923532 814 7 analysis analysis NN 10_1101-2020_01_28_923532 814 8 of of IN 10_1101-2020_01_28_923532 814 9 infiltrating infiltrate VBG 10_1101-2020_01_28_923532 814 10 neoplastic neoplastic JJ 10_1101-2020_01_28_923532 814 11 cells cell NNS 10_1101-2020_01_28_923532 814 12 at at IN 10_1101-2020_01_28_923532 814 13 the the DT 10_1101-2020_01_28_923532 814 14 migrating migrate VBG 10_1101-2020_01_28_923532 814 15 front front NN 10_1101-2020_01_28_923532 814 16 of of IN 10_1101-2020_01_28_923532 814 17 human human JJ 10_1101-2020_01_28_923532 814 18 glioblastoma glioblastoma NN 10_1101-2020_01_28_923532 814 19 . . . 10_1101-2020_01_28_923532 815 1 Cell Cell NNP 10_1101-2020_01_28_923532 815 2 Rep. Rep. NNP 10_1101-2020_01_28_923532 815 3 21 21 CD 10_1101-2020_01_28_923532 815 4 , , , 10_1101-2020_01_28_923532 815 5 1399 1399 CD 10_1101-2020_01_28_923532 815 6 - - SYM 10_1101-2020_01_28_923532 815 7 1410 1410 CD 10_1101-2020_01_28_923532 815 8 ( ( -LRB- 10_1101-2020_01_28_923532 815 9 2017 2017 CD 10_1101-2020_01_28_923532 815 10 ) ) -RRB- 10_1101-2020_01_28_923532 815 11 . . . 10_1101-2020_01_28_923532 816 1 47 47 CD 10_1101-2020_01_28_923532 816 2 . . . 10_1101-2020_01_28_923532 817 1 Bergelson Bergelson NNP 10_1101-2020_01_28_923532 817 2 , , , 10_1101-2020_01_28_923532 817 3 J.M. J.M. NNP 10_1101-2020_01_28_923532 817 4 , , , 10_1101-2020_01_28_923532 817 5 et et NNP 10_1101-2020_01_28_923532 817 6 al al NNP 10_1101-2020_01_28_923532 817 7 . . . 10_1101-2020_01_28_923532 818 1 Isolation isolation NN 10_1101-2020_01_28_923532 818 2 of of IN 10_1101-2020_01_28_923532 818 3 a a DT 10_1101-2020_01_28_923532 818 4 common common JJ 10_1101-2020_01_28_923532 818 5 receptor receptor NN 10_1101-2020_01_28_923532 818 6 for for IN 10_1101-2020_01_28_923532 818 7 coxsackie coxsackie NNP 10_1101-2020_01_28_923532 818 8 B B NNP 10_1101-2020_01_28_923532 818 9 viruses virus NNS 10_1101-2020_01_28_923532 818 10 and and CC 10_1101-2020_01_28_923532 818 11 adenoviruses adenoviruses RB 10_1101-2020_01_28_923532 818 12 2 2 CD 10_1101-2020_01_28_923532 818 13 and and CC 10_1101-2020_01_28_923532 818 14 5 5 CD 10_1101-2020_01_28_923532 818 15 . . . 10_1101-2020_01_28_923532 819 1 Science Science NNP 10_1101-2020_01_28_923532 819 2 275(5304 275(5304 NNP 10_1101-2020_01_28_923532 819 3 ) ) -RRB- 10_1101-2020_01_28_923532 819 4 : : : 10_1101-2020_01_28_923532 819 5 1320 1320 CD 10_1101-2020_01_28_923532 819 6 - - SYM 10_1101-2020_01_28_923532 819 7 1323 1323 CD 10_1101-2020_01_28_923532 819 8 ( ( -LRB- 10_1101-2020_01_28_923532 819 9 1997 1997 CD 10_1101-2020_01_28_923532 819 10 ) ) -RRB- 10_1101-2020_01_28_923532 819 11 . . . 10_1101-2020_01_28_923532 820 1 48 48 CD 10_1101-2020_01_28_923532 820 2 . . . 10_1101-2020_01_28_923532 821 1 Nilchian Nilchian NNP 10_1101-2020_01_28_923532 821 2 , , , 10_1101-2020_01_28_923532 821 3 A. A. NNP 10_1101-2020_01_28_923532 821 4 , , , 10_1101-2020_01_28_923532 821 5 et et NNP 10_1101-2020_01_28_923532 821 6 al al NNP 10_1101-2020_01_28_923532 821 7 . . . 10_1101-2020_01_28_923532 822 1 CXADR CXADR NNP 10_1101-2020_01_28_923532 822 2 - - HYPH 10_1101-2020_01_28_923532 822 3 mediated mediate VBN 10_1101-2020_01_28_923532 822 4 formation formation NN 10_1101-2020_01_28_923532 822 5 of of IN 10_1101-2020_01_28_923532 822 6 an an DT 10_1101-2020_01_28_923532 822 7 AKT AKT NNP 10_1101-2020_01_28_923532 822 8 inhibitory inhibitory NN 10_1101-2020_01_28_923532 822 9 signalosome signalosome JJ 10_1101-2020_01_28_923532 822 10 at at IN 10_1101-2020_01_28_923532 822 11 tight tight JJ 10_1101-2020_01_28_923532 822 12 junctions junction NNS 10_1101-2020_01_28_923532 822 13 controls control VBZ 10_1101-2020_01_28_923532 822 14 epithelial epithelial JJ 10_1101-2020_01_28_923532 822 15 - - HYPH 10_1101-2020_01_28_923532 822 16 mesenchymal mesenchymal JJ 10_1101-2020_01_28_923532 822 17 plasticity plasticity NN 10_1101-2020_01_28_923532 822 18 in in IN 10_1101-2020_01_28_923532 822 19 breast breast NN 10_1101-2020_01_28_923532 822 20 cancer cancer NN 10_1101-2020_01_28_923532 822 21 . . . 10_1101-2020_01_28_923532 823 1 Cancer cancer NN 10_1101-2020_01_28_923532 823 2 Res Res NNP 10_1101-2020_01_28_923532 823 3 . . . 10_1101-2020_01_28_923532 824 1 79(1):47- 79(1):47- CD 10_1101-2020_01_28_923532 824 2 60 60 CD 10_1101-2020_01_28_923532 824 3 ( ( -LRB- 10_1101-2020_01_28_923532 824 4 2019 2019 CD 10_1101-2020_01_28_923532 824 5 ) ) -RRB- 10_1101-2020_01_28_923532 824 6 . . . 10_1101-2020_01_28_923532 825 1 49 49 CD 10_1101-2020_01_28_923532 825 2 . . . 10_1101-2020_01_28_923532 826 1 Arfelt Arfelt NNP 10_1101-2020_01_28_923532 826 2 K.N. K.N. NNP 10_1101-2020_01_28_923532 826 3 , , , 10_1101-2020_01_28_923532 826 4 et et NNP 10_1101-2020_01_28_923532 826 5 al al NNP 10_1101-2020_01_28_923532 826 6 . . . 10_1101-2020_01_28_923532 827 1 Signaling signal VBG 10_1101-2020_01_28_923532 827 2 via via IN 10_1101-2020_01_28_923532 827 3 G g NN 10_1101-2020_01_28_923532 827 4 proteins protein NNS 10_1101-2020_01_28_923532 827 5 mediates mediate VBZ 10_1101-2020_01_28_923532 827 6 tumorigenic tumorigenic JJ 10_1101-2020_01_28_923532 827 7 effects effect NNS 10_1101-2020_01_28_923532 827 8 of of IN 10_1101-2020_01_28_923532 827 9 GPR87 GPR87 NNP 10_1101-2020_01_28_923532 827 10 . . . 10_1101-2020_01_28_923532 828 1 Cell cell NN 10_1101-2020_01_28_923532 828 2 . . . 10_1101-2020_01_28_923532 829 1 Signal Signal NNP 10_1101-2020_01_28_923532 829 2 . . . 10_1101-2020_01_28_923532 830 1 30:9 30:9 CD 10_1101-2020_01_28_923532 830 2 - - SYM 10_1101-2020_01_28_923532 830 3 18 18 CD 10_1101-2020_01_28_923532 830 4 ( ( -LRB- 10_1101-2020_01_28_923532 830 5 2017 2017 CD 10_1101-2020_01_28_923532 830 6 ) ) -RRB- 10_1101-2020_01_28_923532 830 7 . . . 10_1101-2020_01_28_923532 831 1 50 50 CD 10_1101-2020_01_28_923532 831 2 . . . 10_1101-2020_01_28_923532 832 1 Zhang Zhang NNP 10_1101-2020_01_28_923532 832 2 , , , 10_1101-2020_01_28_923532 832 3 Y. Y. NNP 10_1101-2020_01_28_923532 832 4 , , , 10_1101-2020_01_28_923532 832 5 Qian Qian NNP 10_1101-2020_01_28_923532 832 6 , , , 10_1101-2020_01_28_923532 832 7 Y. Y. NNP 10_1101-2020_01_28_923532 832 8 , , , 10_1101-2020_01_28_923532 832 9 Lu Lu NNP 10_1101-2020_01_28_923532 832 10 , , , 10_1101-2020_01_28_923532 832 11 W. W. NNP 10_1101-2020_01_28_923532 832 12 , , , 10_1101-2020_01_28_923532 832 13 Chen Chen NNP 10_1101-2020_01_28_923532 832 14 , , , 10_1101-2020_01_28_923532 832 15 X. X. NNP 10_1101-2020_01_28_923532 833 1 The the DT 10_1101-2020_01_28_923532 833 2 G G NNP 10_1101-2020_01_28_923532 833 3 protein protein NN 10_1101-2020_01_28_923532 833 4 - - HYPH 10_1101-2020_01_28_923532 833 5 coupled couple VBN 10_1101-2020_01_28_923532 833 6 receptor receptor NN 10_1101-2020_01_28_923532 833 7 87 87 CD 10_1101-2020_01_28_923532 833 8 is be VBZ 10_1101-2020_01_28_923532 833 9 necessary necessary JJ 10_1101-2020_01_28_923532 833 10 for for IN 10_1101-2020_01_28_923532 833 11 p53-dependent p53-dependent HYPH 10_1101-2020_01_28_923532 833 12 cell cell NN 10_1101-2020_01_28_923532 833 13 survival survival NN 10_1101-2020_01_28_923532 833 14 in in IN 10_1101-2020_01_28_923532 833 15 response response NN 10_1101-2020_01_28_923532 833 16 to to IN 10_1101-2020_01_28_923532 833 17 genotoxic genotoxic JJ 10_1101-2020_01_28_923532 833 18 stress stress NN 10_1101-2020_01_28_923532 833 19 . . . 10_1101-2020_01_28_923532 834 1 Cancer cancer NN 10_1101-2020_01_28_923532 834 2 Res Res NNP 10_1101-2020_01_28_923532 834 3 . . . 10_1101-2020_01_28_923532 835 1 69(15):6049 69(15):6049 CD 10_1101-2020_01_28_923532 835 2 - - SYM 10_1101-2020_01_28_923532 835 3 6056 6056 CD 10_1101-2020_01_28_923532 835 4 ( ( -LRB- 10_1101-2020_01_28_923532 835 5 2009 2009 CD 10_1101-2020_01_28_923532 835 6 ) ) -RRB- 10_1101-2020_01_28_923532 835 7 . . . 10_1101-2020_01_28_923532 836 1 51 51 CD 10_1101-2020_01_28_923532 836 2 . . . 10_1101-2020_01_28_923532 837 1 Wang Wang NNP 10_1101-2020_01_28_923532 837 2 , , , 10_1101-2020_01_28_923532 837 3 L. L. NNP 10_1101-2020_01_28_923532 837 4 , , , 10_1101-2020_01_28_923532 837 5 et et NNP 10_1101-2020_01_28_923532 837 6 al al NNP 10_1101-2020_01_28_923532 837 7 . . . 10_1101-2020_01_28_923532 838 1 Overexpression overexpression NN 10_1101-2020_01_28_923532 838 2 of of IN 10_1101-2020_01_28_923532 838 3 G g NN 10_1101-2020_01_28_923532 838 4 protein protein NN 10_1101-2020_01_28_923532 838 5 - - HYPH 10_1101-2020_01_28_923532 838 6 coupled couple VBN 10_1101-2020_01_28_923532 838 7 receptor receptor NN 10_1101-2020_01_28_923532 838 8 GPR87 GPR87 NNP 10_1101-2020_01_28_923532 838 9 promotes promote VBZ 10_1101-2020_01_28_923532 838 10 pancreatic pancreatic JJ 10_1101-2020_01_28_923532 838 11 cancer cancer NN 10_1101-2020_01_28_923532 838 12 aggressiveness aggressiveness NN 10_1101-2020_01_28_923532 838 13 and and CC 10_1101-2020_01_28_923532 838 14 activates activate VBZ 10_1101-2020_01_28_923532 838 15 NF NF NNP 10_1101-2020_01_28_923532 838 16 - - HYPH 10_1101-2020_01_28_923532 838 17 κB κB NNP 10_1101-2020_01_28_923532 838 18 signaling signaling NN 10_1101-2020_01_28_923532 838 19 pathway pathway NN 10_1101-2020_01_28_923532 838 20 . . . 10_1101-2020_01_28_923532 839 1 Mol Mol NNP 10_1101-2020_01_28_923532 839 2 . . . 10_1101-2020_01_28_923532 840 1 Cancer cancer NN 10_1101-2020_01_28_923532 840 2 16:61 16:61 CD 10_1101-2020_01_28_923532 840 3 ( ( -LRB- 10_1101-2020_01_28_923532 840 4 2017 2017 CD 10_1101-2020_01_28_923532 840 5 ) ) -RRB- 10_1101-2020_01_28_923532 840 6 . . . 10_1101-2020_01_28_923532 841 1 52 52 CD 10_1101-2020_01_28_923532 841 2 . . . 10_1101-2020_01_28_923532 842 1 Szklarczyk Szklarczyk NNP 10_1101-2020_01_28_923532 842 2 , , , 10_1101-2020_01_28_923532 842 3 D. D. NNP 10_1101-2020_01_28_923532 842 4 , , , 10_1101-2020_01_28_923532 842 5 et et NNP 10_1101-2020_01_28_923532 842 6 al al NNP 10_1101-2020_01_28_923532 842 7 . . . 10_1101-2020_01_28_923532 843 1 STRING string NN 10_1101-2020_01_28_923532 843 2 v11 v11 NN 10_1101-2020_01_28_923532 843 3 : : : 10_1101-2020_01_28_923532 843 4 protein protein NN 10_1101-2020_01_28_923532 843 5 - - HYPH 10_1101-2020_01_28_923532 843 6 protein protein NNP 10_1101-2020_01_28_923532 843 7 association association NNP 10_1101-2020_01_28_923532 843 8 networks network NNS 10_1101-2020_01_28_923532 843 9 with with IN 10_1101-2020_01_28_923532 843 10 increased increase VBN 10_1101-2020_01_28_923532 843 11 coverage coverage NN 10_1101-2020_01_28_923532 843 12 , , , 10_1101-2020_01_28_923532 843 13 supporting support VBG 10_1101-2020_01_28_923532 843 14 functional functional JJ 10_1101-2020_01_28_923532 843 15 discovery discovery NN 10_1101-2020_01_28_923532 843 16 in in IN 10_1101-2020_01_28_923532 843 17 genome genome NN 10_1101-2020_01_28_923532 843 18 - - HYPH 10_1101-2020_01_28_923532 843 19 wide wide JJ 10_1101-2020_01_28_923532 843 20 experimental experimental JJ 10_1101-2020_01_28_923532 843 21 datasets dataset NNS 10_1101-2020_01_28_923532 843 22 . . . 10_1101-2020_01_28_923532 844 1 Nucleic Nucleic NNP 10_1101-2020_01_28_923532 844 2 Acids Acids NNPS 10_1101-2020_01_28_923532 844 3 Res Res NNP 10_1101-2020_01_28_923532 844 4 . . . 10_1101-2020_01_28_923532 845 1 2019 2019 CD 10_1101-2020_01_28_923532 845 2 ; ; : 10_1101-2020_01_28_923532 845 3 47(D1 47(d1 CD 10_1101-2020_01_28_923532 845 4 ) ) -RRB- 10_1101-2020_01_28_923532 845 5 , , , 10_1101-2020_01_28_923532 845 6 D607-D613 D607-D613 NNP 10_1101-2020_01_28_923532 845 7 ( ( -LRB- 10_1101-2020_01_28_923532 845 8 2019 2019 CD 10_1101-2020_01_28_923532 845 9 ) ) -RRB- 10_1101-2020_01_28_923532 845 10 . . . 10_1101-2020_01_28_923532 846 1 53 53 CD 10_1101-2020_01_28_923532 846 2 . . . 10_1101-2020_01_28_923532 847 1 Seoane Seoane NNP 10_1101-2020_01_28_923532 847 2 , , , 10_1101-2020_01_28_923532 847 3 J. J. NNP 10_1101-2020_01_28_923532 848 1 & & CC 10_1101-2020_01_28_923532 848 2 De De NNP 10_1101-2020_01_28_923532 848 3 Mattos Mattos NNP 10_1101-2020_01_28_923532 848 4 - - HYPH 10_1101-2020_01_28_923532 848 5 Arruda Arruda NNP 10_1101-2020_01_28_923532 848 6 L. L. NNP 10_1101-2020_01_28_923532 848 7 The the DT 10_1101-2020_01_28_923532 848 8 challenge challenge NN 10_1101-2020_01_28_923532 848 9 of of IN 10_1101-2020_01_28_923532 848 10 intratumour intratumour NN 10_1101-2020_01_28_923532 848 11 heterogeneity heterogeneity NN 10_1101-2020_01_28_923532 848 12 in in IN 10_1101-2020_01_28_923532 848 13 precision precision NN 10_1101-2020_01_28_923532 848 14 medicine medicine NN 10_1101-2020_01_28_923532 848 15 . . . 10_1101-2020_01_28_923532 849 1 J. J. NNP 10_1101-2020_01_28_923532 849 2 Intern Intern NNP 10_1101-2020_01_28_923532 849 3 . . . 10_1101-2020_01_28_923532 850 1 Med Med NNP 10_1101-2020_01_28_923532 850 2 . . . 10_1101-2020_01_28_923532 851 1 276(1 276(1 LS 10_1101-2020_01_28_923532 851 2 ) ) -RRB- 10_1101-2020_01_28_923532 851 3 , , , 10_1101-2020_01_28_923532 851 4 41 41 CD 10_1101-2020_01_28_923532 851 5 - - SYM 10_1101-2020_01_28_923532 851 6 51 51 CD 10_1101-2020_01_28_923532 851 7 ( ( -LRB- 10_1101-2020_01_28_923532 851 8 2014 2014 CD 10_1101-2020_01_28_923532 851 9 ) ) -RRB- 10_1101-2020_01_28_923532 851 10 . . . 10_1101-2020_01_28_923532 852 1 54 54 CD 10_1101-2020_01_28_923532 852 2 . . . 10_1101-2020_01_28_923532 853 1 Van Van NNP 10_1101-2020_01_28_923532 853 2 Dijk Dijk NNP 10_1101-2020_01_28_923532 853 3 D D NNP 10_1101-2020_01_28_923532 853 4 , , , 10_1101-2020_01_28_923532 853 5 et et NNP 10_1101-2020_01_28_923532 853 6 al al NNP 10_1101-2020_01_28_923532 853 7 . . . 10_1101-2020_01_28_923532 854 1 Recovering recover VBG 10_1101-2020_01_28_923532 854 2 gene gene NN 10_1101-2020_01_28_923532 854 3 interactions interaction NNS 10_1101-2020_01_28_923532 854 4 from from IN 10_1101-2020_01_28_923532 854 5 single single JJ 10_1101-2020_01_28_923532 854 6 - - HYPH 10_1101-2020_01_28_923532 854 7 cell cell NN 10_1101-2020_01_28_923532 854 8 data datum NNS 10_1101-2020_01_28_923532 854 9 using use VBG 10_1101-2020_01_28_923532 854 10 data datum NNS 10_1101-2020_01_28_923532 854 11 diffusion diffusion NN 10_1101-2020_01_28_923532 854 12 . . . 10_1101-2020_01_28_923532 855 1 Cell Cell NNP 10_1101-2020_01_28_923532 855 2 174(3):716 174(3):716 NNP 10_1101-2020_01_28_923532 855 3 - - HYPH 10_1101-2020_01_28_923532 855 4 729.e27 729.e27 NNP 10_1101-2020_01_28_923532 855 5 ( ( -LRB- 10_1101-2020_01_28_923532 855 6 2018 2018 CD 10_1101-2020_01_28_923532 855 7 ) ) -RRB- 10_1101-2020_01_28_923532 855 8 . . . 10_1101-2020_01_28_923532 856 1 55 55 CD 10_1101-2020_01_28_923532 856 2 . . . 10_1101-2020_01_28_923532 857 1 Li Li NNP 10_1101-2020_01_28_923532 857 2 , , , 10_1101-2020_01_28_923532 857 3 W.V. W.V. NNP 10_1101-2020_01_28_923532 858 1 & & CC 10_1101-2020_01_28_923532 858 2 Li Li NNP 10_1101-2020_01_28_923532 858 3 , , , 10_1101-2020_01_28_923532 858 4 J.J. J.J. NNP 10_1101-2020_01_28_923532 858 5 An an DT 10_1101-2020_01_28_923532 858 6 accurate accurate JJ 10_1101-2020_01_28_923532 858 7 and and CC 10_1101-2020_01_28_923532 858 8 robust robust JJ 10_1101-2020_01_28_923532 858 9 imputation imputation NN 10_1101-2020_01_28_923532 858 10 method method NN 10_1101-2020_01_28_923532 858 11 scImpute scimpute VB 10_1101-2020_01_28_923532 858 12 for for IN 10_1101-2020_01_28_923532 858 13 single single JJ 10_1101-2020_01_28_923532 858 14 - - HYPH 10_1101-2020_01_28_923532 858 15 cell cell NN 10_1101-2020_01_28_923532 858 16 RNA- RNA- NNP 10_1101-2020_01_28_923532 858 17 seq seq NN 10_1101-2020_01_28_923532 858 18 data datum NNS 10_1101-2020_01_28_923532 858 19 . . . 10_1101-2020_01_28_923532 859 1 Nat Nat NNP 10_1101-2020_01_28_923532 859 2 . . . 10_1101-2020_01_28_923532 860 1 Comm Comm NNP 10_1101-2020_01_28_923532 860 2 . . . 10_1101-2020_01_28_923532 861 1 9 9 CD 10_1101-2020_01_28_923532 861 2 , , , 10_1101-2020_01_28_923532 861 3 997 997 CD 10_1101-2020_01_28_923532 861 4 ( ( -LRB- 10_1101-2020_01_28_923532 861 5 2018 2018 CD 10_1101-2020_01_28_923532 861 6 ) ) -RRB- 10_1101-2020_01_28_923532 861 7 . . . 10_1101-2020_01_28_923532 862 1 56 56 CD 10_1101-2020_01_28_923532 862 2 . . . 10_1101-2020_01_28_923532 863 1 Raj Raj NNP 10_1101-2020_01_28_923532 863 2 , , , 10_1101-2020_01_28_923532 863 3 A. a. NN 10_1101-2020_01_28_923532 864 1 & & CC 10_1101-2020_01_28_923532 864 2 van van NNP 10_1101-2020_01_28_923532 864 3 Oudenaarden Oudenaarden NNP 10_1101-2020_01_28_923532 864 4 , , , 10_1101-2020_01_28_923532 864 5 A. a. JJ 10_1101-2020_01_28_923532 864 6 Stochastic stochastic JJ 10_1101-2020_01_28_923532 864 7 gene gene NN 10_1101-2020_01_28_923532 864 8 expression expression NN 10_1101-2020_01_28_923532 864 9 and and CC 10_1101-2020_01_28_923532 864 10 its -PRON- PRP$ 10_1101-2020_01_28_923532 864 11 consequences consequence NNS 10_1101-2020_01_28_923532 864 12 . . . 10_1101-2020_01_28_923532 865 1 Cell cell NN 10_1101-2020_01_28_923532 865 2 135(2 135(2 CD 10_1101-2020_01_28_923532 865 3 ) ) -RRB- 10_1101-2020_01_28_923532 865 4 : : : 10_1101-2020_01_28_923532 865 5 216 216 CD 10_1101-2020_01_28_923532 865 6 - - HYPH 10_1101-2020_01_28_923532 865 7 226 226 CD 10_1101-2020_01_28_923532 865 8 ( ( -LRB- 10_1101-2020_01_28_923532 865 9 2008 2008 CD 10_1101-2020_01_28_923532 865 10 ) ) -RRB- 10_1101-2020_01_28_923532 865 11 . . . 10_1101-2020_01_28_923532 866 1 57 57 CD 10_1101-2020_01_28_923532 866 2 . . . 10_1101-2020_01_28_923532 867 1 Kim Kim NNP 10_1101-2020_01_28_923532 867 2 , , , 10_1101-2020_01_28_923532 867 3 J.Y. J.Y. NNP 10_1101-2020_01_28_923532 868 1 & & CC 10_1101-2020_01_28_923532 868 2 Marioni Marioni NNP 10_1101-2020_01_28_923532 868 3 , , , 10_1101-2020_01_28_923532 868 4 J.C. J.C. NNP 10_1101-2020_01_28_923532 868 5 Inferring infer VBG 10_1101-2020_01_28_923532 868 6 the the DT 10_1101-2020_01_28_923532 868 7 kinetics kinetic NNS 10_1101-2020_01_28_923532 868 8 of of IN 10_1101-2020_01_28_923532 868 9 stochastic stochastic JJ 10_1101-2020_01_28_923532 868 10 gene gene NN 10_1101-2020_01_28_923532 868 11 expression expression NN 10_1101-2020_01_28_923532 868 12 from from IN 10_1101-2020_01_28_923532 868 13 single- single- NNP 10_1101-2020_01_28_923532 868 14 cell cell NN 10_1101-2020_01_28_923532 868 15 RNA RNA NNP 10_1101-2020_01_28_923532 868 16 - - HYPH 10_1101-2020_01_28_923532 868 17 sequencing sequence VBG 10_1101-2020_01_28_923532 868 18 data datum NNS 10_1101-2020_01_28_923532 868 19 . . . 10_1101-2020_01_28_923532 869 1 Genome Genome NNP 10_1101-2020_01_28_923532 869 2 Biol Biol NNP 10_1101-2020_01_28_923532 869 3 . . . 10_1101-2020_01_28_923532 870 1 14 14 CD 10_1101-2020_01_28_923532 870 2 , , , 10_1101-2020_01_28_923532 870 3 R7 R7 NNP 10_1101-2020_01_28_923532 870 4 ( ( -LRB- 10_1101-2020_01_28_923532 870 5 2013 2013 CD 10_1101-2020_01_28_923532 870 6 ) ) -RRB- 10_1101-2020_01_28_923532 870 7 . . . 10_1101-2020_01_28_923532 871 1 58 58 CD 10_1101-2020_01_28_923532 871 2 . . . 10_1101-2020_01_28_923532 872 1 Clough Clough NNP 10_1101-2020_01_28_923532 872 2 , , , 10_1101-2020_01_28_923532 872 3 E. E. NNP 10_1101-2020_01_28_923532 872 4 & & CC 10_1101-2020_01_28_923532 872 5 Barrett Barrett NNP 10_1101-2020_01_28_923532 872 6 , , , 10_1101-2020_01_28_923532 872 7 T. T. NNP 10_1101-2020_01_28_923532 872 8 The the DT 10_1101-2020_01_28_923532 872 9 Gene Gene NNP 10_1101-2020_01_28_923532 872 10 Expression Expression NNP 10_1101-2020_01_28_923532 872 11 Omnibus Omnibus NNP 10_1101-2020_01_28_923532 872 12 Database Database NNP 10_1101-2020_01_28_923532 872 13 . . . 10_1101-2020_01_28_923532 873 1 Meth Meth NNP 10_1101-2020_01_28_923532 873 2 . . . 10_1101-2020_01_28_923532 874 1 Mol Mol NNP 10_1101-2020_01_28_923532 874 2 . . . 10_1101-2020_01_28_923532 875 1 Biol Biol NNP 10_1101-2020_01_28_923532 875 2 . . . 10_1101-2020_01_28_923532 876 1 1418 1418 CD 10_1101-2020_01_28_923532 876 2 , , , 10_1101-2020_01_28_923532 876 3 93 93 CD 10_1101-2020_01_28_923532 876 4 - - SYM 10_1101-2020_01_28_923532 876 5 110 110 CD 10_1101-2020_01_28_923532 876 6 ( ( -LRB- 10_1101-2020_01_28_923532 876 7 2016 2016 CD 10_1101-2020_01_28_923532 876 8 ) ) -RRB- 10_1101-2020_01_28_923532 876 9 . . . 10_1101-2020_01_28_923532 877 1 59 59 CD 10_1101-2020_01_28_923532 877 2 . . . 10_1101-2020_01_28_923532 878 1 Kolesnikov Kolesnikov NNP 10_1101-2020_01_28_923532 878 2 , , , 10_1101-2020_01_28_923532 878 3 N. N. NNP 10_1101-2020_01_28_923532 878 4 , , , 10_1101-2020_01_28_923532 878 5 et et NNP 10_1101-2020_01_28_923532 878 6 al al NNP 10_1101-2020_01_28_923532 878 7 . . . 10_1101-2020_01_28_923532 879 1 ArrayExpress ArrayExpress NNP 10_1101-2020_01_28_923532 879 2 update update NN 10_1101-2020_01_28_923532 879 3 -- -- : 10_1101-2020_01_28_923532 879 4 simplifying simplify VBG 10_1101-2020_01_28_923532 879 5 data datum NNS 10_1101-2020_01_28_923532 879 6 submissions submission NNS 10_1101-2020_01_28_923532 879 7 . . . 10_1101-2020_01_28_923532 880 1 Nucleic Nucleic NNP 10_1101-2020_01_28_923532 880 2 Acids Acids NNPS 10_1101-2020_01_28_923532 880 3 Res Res NNP 10_1101-2020_01_28_923532 880 4 . . . 10_1101-2020_01_28_923532 881 1 43(Database 43(database CD 10_1101-2020_01_28_923532 881 2 Issue issue NN 10_1101-2020_01_28_923532 881 3 ) ) -RRB- 10_1101-2020_01_28_923532 881 4 , , , 10_1101-2020_01_28_923532 881 5 D1113-D1116 D1113-D1116 NNP 10_1101-2020_01_28_923532 881 6 ( ( -LRB- 10_1101-2020_01_28_923532 881 7 2015 2015 CD 10_1101-2020_01_28_923532 881 8 ) ) -RRB- 10_1101-2020_01_28_923532 881 9 . . . 10_1101-2020_01_28_923532 882 1 60 60 CD 10_1101-2020_01_28_923532 882 2 . . . 10_1101-2020_01_28_923532 883 1 Cao Cao NNP 10_1101-2020_01_28_923532 883 2 , , , 10_1101-2020_01_28_923532 883 3 Y. Y. NNP 10_1101-2020_01_28_923532 883 4 , , , 10_1101-2020_01_28_923532 883 5 Zhu Zhu NNP 10_1101-2020_01_28_923532 883 6 , , , 10_1101-2020_01_28_923532 883 7 J. J. NNP 10_1101-2020_01_28_923532 883 8 , , , 10_1101-2020_01_28_923532 883 9 Jia Jia NNP 10_1101-2020_01_28_923532 883 10 , , , 10_1101-2020_01_28_923532 883 11 P. P. NNP 10_1101-2020_01_28_923532 883 12 & & CC 10_1101-2020_01_28_923532 883 13 Zhao Zhao NNP 10_1101-2020_01_28_923532 883 14 Z. Z. NNP 10_1101-2020_01_28_923532 883 15 scRNASeqDB scrnaseqdb NN 10_1101-2020_01_28_923532 883 16 : : : 10_1101-2020_01_28_923532 883 17 A a DT 10_1101-2020_01_28_923532 883 18 database database NN 10_1101-2020_01_28_923532 883 19 for for IN 10_1101-2020_01_28_923532 883 20 RNA RNA NNP 10_1101-2020_01_28_923532 883 21 - - HYPH 10_1101-2020_01_28_923532 883 22 seq seq NNP 10_1101-2020_01_28_923532 883 23 based base VBN 10_1101-2020_01_28_923532 883 24 gene gene NN 10_1101-2020_01_28_923532 883 25 expression expression NN 10_1101-2020_01_28_923532 883 26 profiles profile NNS 10_1101-2020_01_28_923532 883 27 in in IN 10_1101-2020_01_28_923532 883 28 human human JJ 10_1101-2020_01_28_923532 883 29 single single JJ 10_1101-2020_01_28_923532 883 30 cells cell NNS 10_1101-2020_01_28_923532 883 31 . . . 10_1101-2020_01_28_923532 884 1 Genes gene NNS 10_1101-2020_01_28_923532 884 2 8(12 8(12 NNP 10_1101-2020_01_28_923532 884 3 ) ) -RRB- 10_1101-2020_01_28_923532 884 4 , , , 10_1101-2020_01_28_923532 884 5 368 368 CD 10_1101-2020_01_28_923532 884 6 ( ( -LRB- 10_1101-2020_01_28_923532 884 7 2017 2017 CD 10_1101-2020_01_28_923532 884 8 ) ) -RRB- 10_1101-2020_01_28_923532 884 9 . . . 10_1101-2020_01_28_923532 885 1 105 105 CD 10_1101-2020_01_28_923532 885 2 and and CC 10_1101-2020_01_28_923532 885 3 is be VBZ 10_1101-2020_01_28_923532 885 4 also also RB 10_1101-2020_01_28_923532 885 5 made make VBN 10_1101-2020_01_28_923532 885 6 available available JJ 10_1101-2020_01_28_923532 885 7 for for IN 10_1101-2020_01_28_923532 885 8 use use NN 10_1101-2020_01_28_923532 885 9 under under IN 10_1101-2020_01_28_923532 885 10 a a DT 10_1101-2020_01_28_923532 885 11 CC0 CC0 NNP 10_1101-2020_01_28_923532 885 12 license license NN 10_1101-2020_01_28_923532 885 13 . . . 10_1101-2020_01_28_923532 886 1 ( ( -LRB- 10_1101-2020_01_28_923532 886 2 which which WDT 10_1101-2020_01_28_923532 886 3 was be VBD 10_1101-2020_01_28_923532 886 4 not not RB 10_1101-2020_01_28_923532 886 5 certified certify VBN 10_1101-2020_01_28_923532 886 6 by by IN 10_1101-2020_01_28_923532 886 7 peer peer NN 10_1101-2020_01_28_923532 886 8 review review NN 10_1101-2020_01_28_923532 886 9 ) ) -RRB- 10_1101-2020_01_28_923532 886 10 is be VBZ 10_1101-2020_01_28_923532 886 11 the the DT 10_1101-2020_01_28_923532 886 12 author author NN 10_1101-2020_01_28_923532 886 13 / / SYM 10_1101-2020_01_28_923532 886 14 funder funder NN 10_1101-2020_01_28_923532 886 15 . . . 10_1101-2020_01_28_923532 887 1 This this DT 10_1101-2020_01_28_923532 887 2 article article NN 10_1101-2020_01_28_923532 887 3 is be VBZ 10_1101-2020_01_28_923532 887 4 a a DT 10_1101-2020_01_28_923532 887 5 US US NNP 10_1101-2020_01_28_923532 887 6 Government Government NNP 10_1101-2020_01_28_923532 887 7 work work NN 10_1101-2020_01_28_923532 887 8 . . . 10_1101-2020_01_28_923532 888 1 It -PRON- PRP 10_1101-2020_01_28_923532 888 2 is be VBZ 10_1101-2020_01_28_923532 888 3 not not RB 10_1101-2020_01_28_923532 888 4 subject subject JJ 10_1101-2020_01_28_923532 888 5 to to IN 10_1101-2020_01_28_923532 888 6 copyright copyright NN 10_1101-2020_01_28_923532 888 7 under under IN 10_1101-2020_01_28_923532 888 8 17 17 CD 10_1101-2020_01_28_923532 888 9 USC usc NN 10_1101-2020_01_28_923532 888 10 The the DT 10_1101-2020_01_28_923532 888 11 copyright copyright NN 10_1101-2020_01_28_923532 888 12 holder holder NN 10_1101-2020_01_28_923532 888 13 for for IN 10_1101-2020_01_28_923532 888 14 this this DT 10_1101-2020_01_28_923532 888 15 preprintthis preprintthis NN 10_1101-2020_01_28_923532 888 16 version version NN 10_1101-2020_01_28_923532 888 17 posted post VBD 10_1101-2020_01_28_923532 888 18 February February NNP 10_1101-2020_01_28_923532 888 19 12 12 CD 10_1101-2020_01_28_923532 888 20 , , , 10_1101-2020_01_28_923532 888 21 2021 2021 CD 10_1101-2020_01_28_923532 888 22 . . . 10_1101-2020_01_28_923532 888 23 ; ; : 10_1101-2020_01_28_923532 888 24 https://doi.org/10.1101/2020.01.28.923532doi https://doi.org/10.1101/2020.01.28.923532doi ADD 10_1101-2020_01_28_923532 888 25 : : : 10_1101-2020_01_28_923532 888 26 bioRxiv biorxiv VB 10_1101-2020_01_28_923532 888 27 preprint preprint NN 10_1101-2020_01_28_923532 888 28 https://doi.org/10.1101/2020.01.28.923532 https://doi.org/10.1101/2020.01.28.923532 UH 10_1101-2020_01_28_923532 888 29 45 45 CD 10_1101-2020_01_28_923532 888 30 61 61 CD 10_1101-2020_01_28_923532 888 31 . . . 10_1101-2020_01_28_923532 889 1 Yuan Yuan NNP 10_1101-2020_01_28_923532 889 2 J J NNP 10_1101-2020_01_28_923532 889 3 , , , 10_1101-2020_01_28_923532 889 4 et et NNP 10_1101-2020_01_28_923532 889 5 al al NNP 10_1101-2020_01_28_923532 889 6 . . . 10_1101-2020_01_28_923532 890 1 Single single JJ 10_1101-2020_01_28_923532 890 2 - - HYPH 10_1101-2020_01_28_923532 890 3 cell cell NN 10_1101-2020_01_28_923532 890 4 transcriptome transcriptome DT 10_1101-2020_01_28_923532 890 5 analysis analysis NN 10_1101-2020_01_28_923532 890 6 of of IN 10_1101-2020_01_28_923532 890 7 lineage lineage NN 10_1101-2020_01_28_923532 890 8 diversity diversity NN 10_1101-2020_01_28_923532 890 9 in in IN 10_1101-2020_01_28_923532 890 10 high high JJ 10_1101-2020_01_28_923532 890 11 - - HYPH 10_1101-2020_01_28_923532 890 12 grade grade NN 10_1101-2020_01_28_923532 890 13 glioma glioma NN 10_1101-2020_01_28_923532 890 14 . . . 10_1101-2020_01_28_923532 891 1 Genome genome JJ 10_1101-2020_01_28_923532 891 2 Med Med NNP 10_1101-2020_01_28_923532 891 3 . . . 10_1101-2020_01_28_923532 892 1 10(1 10(1 LS 10_1101-2020_01_28_923532 892 2 ) ) -RRB- 10_1101-2020_01_28_923532 892 3 , , , 10_1101-2020_01_28_923532 892 4 57 57 CD 10_1101-2020_01_28_923532 892 5 ( ( -LRB- 10_1101-2020_01_28_923532 892 6 2018 2018 CD 10_1101-2020_01_28_923532 892 7 ) ) -RRB- 10_1101-2020_01_28_923532 892 8 . . . 10_1101-2020_01_28_923532 893 1 62 62 CD 10_1101-2020_01_28_923532 893 2 . . . 10_1101-2020_01_28_923532 894 1 Karaayvaz Karaayvaz NNP 10_1101-2020_01_28_923532 894 2 , , , 10_1101-2020_01_28_923532 894 3 M. M. NNP 10_1101-2020_01_28_923532 894 4 , , , 10_1101-2020_01_28_923532 894 5 et et NNP 10_1101-2020_01_28_923532 894 6 al al NNP 10_1101-2020_01_28_923532 894 7 . . . 10_1101-2020_01_28_923532 895 1 Unravelling unravel VBG 10_1101-2020_01_28_923532 895 2 subclonal subclonal JJ 10_1101-2020_01_28_923532 895 3 heterogeneity heterogeneity NN 10_1101-2020_01_28_923532 895 4 and and CC 10_1101-2020_01_28_923532 895 5 aggressive aggressive JJ 10_1101-2020_01_28_923532 895 6 disease disease NN 10_1101-2020_01_28_923532 895 7 states state NNS 10_1101-2020_01_28_923532 895 8 in in IN 10_1101-2020_01_28_923532 895 9 TNBC tnbc NN 10_1101-2020_01_28_923532 895 10 through through IN 10_1101-2020_01_28_923532 895 11 single single JJ 10_1101-2020_01_28_923532 895 12 - - HYPH 10_1101-2020_01_28_923532 895 13 cell cell NN 10_1101-2020_01_28_923532 895 14 RNA RNA NNP 10_1101-2020_01_28_923532 895 15 - - HYPH 10_1101-2020_01_28_923532 895 16 seq seq NN 10_1101-2020_01_28_923532 895 17 . . . 10_1101-2020_01_28_923532 896 1 Nat Nat NNP 10_1101-2020_01_28_923532 896 2 . . . 10_1101-2020_01_28_923532 897 1 Comm Comm NNP 10_1101-2020_01_28_923532 897 2 . . . 10_1101-2020_01_28_923532 898 1 9(1 9(1 NN 10_1101-2020_01_28_923532 898 2 ) ) -RRB- 10_1101-2020_01_28_923532 898 3 , , , 10_1101-2020_01_28_923532 898 4 3588 3588 CD 10_1101-2020_01_28_923532 898 5 ( ( -LRB- 10_1101-2020_01_28_923532 898 6 2018 2018 CD 10_1101-2020_01_28_923532 898 7 ) ) -RRB- 10_1101-2020_01_28_923532 898 8 . . . 10_1101-2020_01_28_923532 899 1 63 63 CD 10_1101-2020_01_28_923532 899 2 . . . 10_1101-2020_01_28_923532 900 1 Jerby Jerby NNP 10_1101-2020_01_28_923532 900 2 - - HYPH 10_1101-2020_01_28_923532 900 3 Arnon Arnon NNP 10_1101-2020_01_28_923532 900 4 , , , 10_1101-2020_01_28_923532 900 5 L. L. NNP 10_1101-2020_01_28_923532 900 6 , , , 10_1101-2020_01_28_923532 900 7 et et NNP 10_1101-2020_01_28_923532 900 8 al al NNP 10_1101-2020_01_28_923532 900 9 . . . 10_1101-2020_01_28_923532 901 1 A a DT 10_1101-2020_01_28_923532 901 2 cancer cancer NN 10_1101-2020_01_28_923532 901 3 cell cell NN 10_1101-2020_01_28_923532 901 4 program program NN 10_1101-2020_01_28_923532 901 5 promotes promote VBZ 10_1101-2020_01_28_923532 901 6 T T NNP 10_1101-2020_01_28_923532 901 7 cell cell NN 10_1101-2020_01_28_923532 901 8 exclusion exclusion NN 10_1101-2020_01_28_923532 901 9 and and CC 10_1101-2020_01_28_923532 901 10 resistance resistance NN 10_1101-2020_01_28_923532 901 11 to to IN 10_1101-2020_01_28_923532 901 12 checkpoint checkpoint JJ 10_1101-2020_01_28_923532 901 13 blockade blockade NN 10_1101-2020_01_28_923532 901 14 . . . 10_1101-2020_01_28_923532 902 1 Cell Cell NNP 10_1101-2020_01_28_923532 902 2 175(4):984 175(4):984 NNP 10_1101-2020_01_28_923532 902 3 - - HYPH 10_1101-2020_01_28_923532 902 4 997.e24 997.e24 NNP 10_1101-2020_01_28_923532 902 5 ( ( -LRB- 10_1101-2020_01_28_923532 902 6 2018 2018 CD 10_1101-2020_01_28_923532 902 7 ) ) -RRB- 10_1101-2020_01_28_923532 902 8 . . . 10_1101-2020_01_28_923532 903 1 64 64 CD 10_1101-2020_01_28_923532 903 2 . . . 10_1101-2020_01_28_923532 904 1 Tirosh Tirosh NNP 10_1101-2020_01_28_923532 904 2 , , , 10_1101-2020_01_28_923532 904 3 I. I. NNP 10_1101-2020_01_28_923532 904 4 , , , 10_1101-2020_01_28_923532 904 5 et et NNP 10_1101-2020_01_28_923532 904 6 al al NNP 10_1101-2020_01_28_923532 904 7 . . . 10_1101-2020_01_28_923532 905 1 Dissecting dissect VBG 10_1101-2020_01_28_923532 905 2 the the DT 10_1101-2020_01_28_923532 905 3 multicellular multicellular JJ 10_1101-2020_01_28_923532 905 4 ecosystem ecosystem NN 10_1101-2020_01_28_923532 905 5 of of IN 10_1101-2020_01_28_923532 905 6 metastatic metastatic JJ 10_1101-2020_01_28_923532 905 7 melanoma melanoma NN 10_1101-2020_01_28_923532 905 8 by by IN 10_1101-2020_01_28_923532 905 9 single single JJ 10_1101-2020_01_28_923532 905 10 - - HYPH 10_1101-2020_01_28_923532 905 11 cell cell NN 10_1101-2020_01_28_923532 905 12 RNA RNA NNP 10_1101-2020_01_28_923532 905 13 - - HYPH 10_1101-2020_01_28_923532 905 14 seq seq NN 10_1101-2020_01_28_923532 905 15 . . . 10_1101-2020_01_28_923532 906 1 Science Science NNP 10_1101-2020_01_28_923532 906 2 352(6282 352(6282 NNP 10_1101-2020_01_28_923532 906 3 ) ) -RRB- 10_1101-2020_01_28_923532 906 4 , , , 10_1101-2020_01_28_923532 906 5 189 189 CD 10_1101-2020_01_28_923532 906 6 - - SYM 10_1101-2020_01_28_923532 906 7 196 196 CD 10_1101-2020_01_28_923532 906 8 ( ( -LRB- 10_1101-2020_01_28_923532 906 9 2016 2016 CD 10_1101-2020_01_28_923532 906 10 ) ) -RRB- 10_1101-2020_01_28_923532 906 11 . . . 10_1101-2020_01_28_923532 907 1 65 65 CD 10_1101-2020_01_28_923532 907 2 . . . 10_1101-2020_01_28_923532 908 1 Chung Chung NNP 10_1101-2020_01_28_923532 908 2 , , , 10_1101-2020_01_28_923532 908 3 W. W. NNP 10_1101-2020_01_28_923532 908 4 , , , 10_1101-2020_01_28_923532 908 5 et et NNP 10_1101-2020_01_28_923532 908 6 al al NNP 10_1101-2020_01_28_923532 908 7 . . . 10_1101-2020_01_28_923532 909 1 Single single JJ 10_1101-2020_01_28_923532 909 2 - - HYPH 10_1101-2020_01_28_923532 909 3 cell cell NN 10_1101-2020_01_28_923532 909 4 RNA RNA NNP 10_1101-2020_01_28_923532 909 5 - - HYPH 10_1101-2020_01_28_923532 909 6 seq seq NN 10_1101-2020_01_28_923532 909 7 enables enable NNS 10_1101-2020_01_28_923532 909 8 comprehensive comprehensive JJ 10_1101-2020_01_28_923532 909 9 tumour tumour NN 10_1101-2020_01_28_923532 909 10 and and CC 10_1101-2020_01_28_923532 909 11 immune immune JJ 10_1101-2020_01_28_923532 909 12 cell cell NN 10_1101-2020_01_28_923532 909 13 profiling profiling NN 10_1101-2020_01_28_923532 909 14 in in IN 10_1101-2020_01_28_923532 909 15 primary primary JJ 10_1101-2020_01_28_923532 909 16 breast breast NN 10_1101-2020_01_28_923532 909 17 cancer cancer NN 10_1101-2020_01_28_923532 909 18 . . . 10_1101-2020_01_28_923532 910 1 Nat Nat NNP 10_1101-2020_01_28_923532 910 2 . . . 10_1101-2020_01_28_923532 911 1 Comm Comm NNP 10_1101-2020_01_28_923532 911 2 . . . 10_1101-2020_01_28_923532 912 1 8,15081 8,15081 NNP 10_1101-2020_01_28_923532 912 2 ( ( -LRB- 10_1101-2020_01_28_923532 912 3 2017 2017 CD 10_1101-2020_01_28_923532 912 4 ) ) -RRB- 10_1101-2020_01_28_923532 912 5 . . . 10_1101-2020_01_28_923532 913 1 66 66 CD 10_1101-2020_01_28_923532 913 2 . . . 10_1101-2020_01_28_923532 914 1 Venteicher Venteicher NNP 10_1101-2020_01_28_923532 914 2 , , , 10_1101-2020_01_28_923532 914 3 A.S. A.S. NNP 10_1101-2020_01_28_923532 914 4 , , , 10_1101-2020_01_28_923532 914 5 et et NNP 10_1101-2020_01_28_923532 914 6 al al NNP 10_1101-2020_01_28_923532 914 7 . . . 10_1101-2020_01_28_923532 915 1 Decoupling decouple VBG 10_1101-2020_01_28_923532 915 2 genetics genetic NNS 10_1101-2020_01_28_923532 915 3 , , , 10_1101-2020_01_28_923532 915 4 lineages lineage NNS 10_1101-2020_01_28_923532 915 5 , , , 10_1101-2020_01_28_923532 915 6 and and CC 10_1101-2020_01_28_923532 915 7 microenvironment microenvironment NN 10_1101-2020_01_28_923532 915 8 in in IN 10_1101-2020_01_28_923532 915 9 IDH IDH NNP 10_1101-2020_01_28_923532 915 10 - - HYPH 10_1101-2020_01_28_923532 915 11 mutant mutant JJ 10_1101-2020_01_28_923532 915 12 gliomas glioma NNS 10_1101-2020_01_28_923532 915 13 by by IN 10_1101-2020_01_28_923532 915 14 single single JJ 10_1101-2020_01_28_923532 915 15 - - HYPH 10_1101-2020_01_28_923532 915 16 cell cell NN 10_1101-2020_01_28_923532 915 17 RNA RNA NNP 10_1101-2020_01_28_923532 915 18 - - HYPH 10_1101-2020_01_28_923532 915 19 seq seq NN 10_1101-2020_01_28_923532 915 20 . . . 10_1101-2020_01_28_923532 916 1 Science science NN 10_1101-2020_01_28_923532 916 2 355(6332 355(6332 NNP 10_1101-2020_01_28_923532 916 3 ) ) -RRB- 10_1101-2020_01_28_923532 916 4 : : : 10_1101-2020_01_28_923532 916 5 pii pii NN 10_1101-2020_01_28_923532 916 6 : : : 10_1101-2020_01_28_923532 916 7 eaai8478 eaai8478 NNP 10_1101-2020_01_28_923532 916 8 ( ( -LRB- 10_1101-2020_01_28_923532 916 9 2017 2017 CD 10_1101-2020_01_28_923532 916 10 ) ) -RRB- 10_1101-2020_01_28_923532 916 11 . . . 10_1101-2020_01_28_923532 917 1 67 67 CD 10_1101-2020_01_28_923532 917 2 . . . 10_1101-2020_01_28_923532 918 1 Tirosh Tirosh NNP 10_1101-2020_01_28_923532 918 2 , , , 10_1101-2020_01_28_923532 918 3 I. I. NNP 10_1101-2020_01_28_923532 918 4 , , , 10_1101-2020_01_28_923532 918 5 et et NNP 10_1101-2020_01_28_923532 918 6 al al NNP 10_1101-2020_01_28_923532 918 7 . . . 10_1101-2020_01_28_923532 919 1 Single single JJ 10_1101-2020_01_28_923532 919 2 - - HYPH 10_1101-2020_01_28_923532 919 3 cell cell NN 10_1101-2020_01_28_923532 919 4 RNA RNA NNP 10_1101-2020_01_28_923532 919 5 - - HYPH 10_1101-2020_01_28_923532 919 6 seq seq NN 10_1101-2020_01_28_923532 919 7 supports support VBZ 10_1101-2020_01_28_923532 919 8 a a DT 10_1101-2020_01_28_923532 919 9 developmental developmental JJ 10_1101-2020_01_28_923532 919 10 hierarchy hierarchy NN 10_1101-2020_01_28_923532 919 11 in in IN 10_1101-2020_01_28_923532 919 12 human human JJ 10_1101-2020_01_28_923532 919 13 oligodendroglioma oligodendroglioma NN 10_1101-2020_01_28_923532 919 14 . . . 10_1101-2020_01_28_923532 920 1 Nature nature NN 10_1101-2020_01_28_923532 920 2 539(7628 539(7628 NNP 10_1101-2020_01_28_923532 920 3 ) ) -RRB- 10_1101-2020_01_28_923532 920 4 , , , 10_1101-2020_01_28_923532 920 5 309 309 CD 10_1101-2020_01_28_923532 920 6 - - SYM 10_1101-2020_01_28_923532 920 7 313 313 CD 10_1101-2020_01_28_923532 920 8 ( ( -LRB- 10_1101-2020_01_28_923532 920 9 2016a 2016a CD 10_1101-2020_01_28_923532 920 10 ) ) -RRB- 10_1101-2020_01_28_923532 920 11 . . . 10_1101-2020_01_28_923532 921 1 68 68 CD 10_1101-2020_01_28_923532 921 2 . . . 10_1101-2020_01_28_923532 922 1 Patel Patel NNP 10_1101-2020_01_28_923532 922 2 , , , 10_1101-2020_01_28_923532 922 3 A.P. A.P. NNP 10_1101-2020_01_28_923532 922 4 , , , 10_1101-2020_01_28_923532 922 5 et et NNP 10_1101-2020_01_28_923532 922 6 al al NNP 10_1101-2020_01_28_923532 922 7 . . . 10_1101-2020_01_28_923532 923 1 Single single JJ 10_1101-2020_01_28_923532 923 2 - - HYPH 10_1101-2020_01_28_923532 923 3 cell cell NN 10_1101-2020_01_28_923532 923 4 RNA RNA NNP 10_1101-2020_01_28_923532 923 5 - - HYPH 10_1101-2020_01_28_923532 923 6 seq seq NN 10_1101-2020_01_28_923532 923 7 highlights highlight NNS 10_1101-2020_01_28_923532 923 8 intratumoral intratumoral JJ 10_1101-2020_01_28_923532 923 9 heterogeneity heterogeneity NN 10_1101-2020_01_28_923532 923 10 in in IN 10_1101-2020_01_28_923532 923 11 primary primary JJ 10_1101-2020_01_28_923532 923 12 glioblastoma glioblastoma NN 10_1101-2020_01_28_923532 923 13 . . . 10_1101-2020_01_28_923532 924 1 Science science NN 10_1101-2020_01_28_923532 924 2 344(6190 344(6190 NNP 10_1101-2020_01_28_923532 924 3 ) ) -RRB- 10_1101-2020_01_28_923532 924 4 , , , 10_1101-2020_01_28_923532 924 5 1396 1396 CD 10_1101-2020_01_28_923532 924 6 - - SYM 10_1101-2020_01_28_923532 924 7 1401 1401 CD 10_1101-2020_01_28_923532 924 8 ( ( -LRB- 10_1101-2020_01_28_923532 924 9 2014 2014 CD 10_1101-2020_01_28_923532 924 10 ) ) -RRB- 10_1101-2020_01_28_923532 924 11 . . . 10_1101-2020_01_28_923532 925 1 69 69 CD 10_1101-2020_01_28_923532 925 2 . . . 10_1101-2020_01_28_923532 926 1 Filbin Filbin NNP 10_1101-2020_01_28_923532 926 2 , , , 10_1101-2020_01_28_923532 926 3 M.G. M.G. NNP 10_1101-2020_01_28_923532 926 4 , , , 10_1101-2020_01_28_923532 926 5 et et NNP 10_1101-2020_01_28_923532 926 6 al al NNP 10_1101-2020_01_28_923532 926 7 . . . 10_1101-2020_01_28_923532 927 1 Developmental developmental JJ 10_1101-2020_01_28_923532 927 2 and and CC 10_1101-2020_01_28_923532 927 3 oncogenic oncogenic JJ 10_1101-2020_01_28_923532 927 4 programs program NNS 10_1101-2020_01_28_923532 927 5 in in IN 10_1101-2020_01_28_923532 927 6 H3K27 H3K27 NNP 10_1101-2020_01_28_923532 927 7 M M NNP 10_1101-2020_01_28_923532 927 8 gliomas gliomas NNP 10_1101-2020_01_28_923532 927 9 dissected dissect VBN 10_1101-2020_01_28_923532 927 10 by by IN 10_1101-2020_01_28_923532 927 11 single single JJ 10_1101-2020_01_28_923532 927 12 - - HYPH 10_1101-2020_01_28_923532 927 13 cell cell NN 10_1101-2020_01_28_923532 927 14 RNA RNA NNP 10_1101-2020_01_28_923532 927 15 - - HYPH 10_1101-2020_01_28_923532 927 16 seq seq NN 10_1101-2020_01_28_923532 927 17 . . . 10_1101-2020_01_28_923532 928 1 Science science NN 10_1101-2020_01_28_923532 928 2 360(6386 360(6386 NNP 10_1101-2020_01_28_923532 928 3 ) ) -RRB- 10_1101-2020_01_28_923532 928 4 , , , 10_1101-2020_01_28_923532 928 5 331 331 CD 10_1101-2020_01_28_923532 928 6 - - HYPH 10_1101-2020_01_28_923532 928 7 335 335 CD 10_1101-2020_01_28_923532 928 8 ( ( -LRB- 10_1101-2020_01_28_923532 928 9 2018 2018 CD 10_1101-2020_01_28_923532 928 10 ) ) -RRB- 10_1101-2020_01_28_923532 928 11 . . . 10_1101-2020_01_28_923532 929 1 70 70 CD 10_1101-2020_01_28_923532 929 2 . . . 10_1101-2020_01_28_923532 930 1 Li Li NNP 10_1101-2020_01_28_923532 930 2 , , , 10_1101-2020_01_28_923532 930 3 H. H. NNP 10_1101-2020_01_28_923532 930 4 , , , 10_1101-2020_01_28_923532 930 5 et et NNP 10_1101-2020_01_28_923532 930 6 al al NNP 10_1101-2020_01_28_923532 930 7 . . . 10_1101-2020_01_28_923532 931 1 Reference reference NN 10_1101-2020_01_28_923532 931 2 component component NN 10_1101-2020_01_28_923532 931 3 analysis analysis NN 10_1101-2020_01_28_923532 931 4 of of IN 10_1101-2020_01_28_923532 931 5 single single JJ 10_1101-2020_01_28_923532 931 6 - - HYPH 10_1101-2020_01_28_923532 931 7 cell cell NN 10_1101-2020_01_28_923532 931 8 transcriptomes transcriptome NNS 10_1101-2020_01_28_923532 931 9 elucidates elucidate VBZ 10_1101-2020_01_28_923532 931 10 cellular cellular JJ 10_1101-2020_01_28_923532 931 11 heterogeneity heterogeneity NN 10_1101-2020_01_28_923532 931 12 in in IN 10_1101-2020_01_28_923532 931 13 human human JJ 10_1101-2020_01_28_923532 931 14 colorectal colorectal JJ 10_1101-2020_01_28_923532 931 15 tumors tumor NNS 10_1101-2020_01_28_923532 931 16 . . . 10_1101-2020_01_28_923532 932 1 Nat Nat NNP 10_1101-2020_01_28_923532 932 2 . . . 10_1101-2020_01_28_923532 933 1 Genet Genet NNP 10_1101-2020_01_28_923532 933 2 . . . 10_1101-2020_01_28_923532 934 1 49(5 49(5 LS 10_1101-2020_01_28_923532 934 2 ) ) -RRB- 10_1101-2020_01_28_923532 934 3 , , , 10_1101-2020_01_28_923532 934 4 708 708 CD 10_1101-2020_01_28_923532 934 5 - - HYPH 10_1101-2020_01_28_923532 934 6 718 718 CD 10_1101-2020_01_28_923532 934 7 ( ( -LRB- 10_1101-2020_01_28_923532 934 8 2017 2017 CD 10_1101-2020_01_28_923532 934 9 ) ) -RRB- 10_1101-2020_01_28_923532 934 10 . . . 10_1101-2020_01_28_923532 935 1 71 71 CD 10_1101-2020_01_28_923532 935 2 . . . 10_1101-2020_01_28_923532 936 1 Puram Puram NNP 10_1101-2020_01_28_923532 936 2 , , , 10_1101-2020_01_28_923532 936 3 S.V. S.V. NNP 10_1101-2020_01_28_923532 936 4 , , , 10_1101-2020_01_28_923532 936 5 et et NNP 10_1101-2020_01_28_923532 936 6 al al NNP 10_1101-2020_01_28_923532 936 7 . . . 10_1101-2020_01_28_923532 937 1 Single single JJ 10_1101-2020_01_28_923532 937 2 - - HYPH 10_1101-2020_01_28_923532 937 3 cell cell NN 10_1101-2020_01_28_923532 937 4 transcriptomic transcriptomic JJ 10_1101-2020_01_28_923532 937 5 analysis analysis NN 10_1101-2020_01_28_923532 937 6 of of IN 10_1101-2020_01_28_923532 937 7 primary primary JJ 10_1101-2020_01_28_923532 937 8 and and CC 10_1101-2020_01_28_923532 937 9 metastatic metastatic JJ 10_1101-2020_01_28_923532 937 10 tumor tumor NN 10_1101-2020_01_28_923532 937 11 ecosystems ecosystem NNS 10_1101-2020_01_28_923532 937 12 in in IN 10_1101-2020_01_28_923532 937 13 head head NN 10_1101-2020_01_28_923532 937 14 and and CC 10_1101-2020_01_28_923532 937 15 neck neck NN 10_1101-2020_01_28_923532 937 16 cancer cancer NN 10_1101-2020_01_28_923532 937 17 . . . 10_1101-2020_01_28_923532 938 1 Cell cell NN 10_1101-2020_01_28_923532 938 2 171(7 171(7 CD 10_1101-2020_01_28_923532 938 3 ) ) -RRB- 10_1101-2020_01_28_923532 938 4 , , , 10_1101-2020_01_28_923532 938 5 1611 1611 CD 10_1101-2020_01_28_923532 938 6 - - SYM 10_1101-2020_01_28_923532 938 7 1624.e24 1624.e24 CD 10_1101-2020_01_28_923532 938 8 ( ( -LRB- 10_1101-2020_01_28_923532 938 9 2017 2017 CD 10_1101-2020_01_28_923532 938 10 ) ) -RRB- 10_1101-2020_01_28_923532 938 11 . . . 10_1101-2020_01_28_923532 939 1 72 72 CD 10_1101-2020_01_28_923532 939 2 . . . 10_1101-2020_01_28_923532 940 1 Shih Shih NNP 10_1101-2020_01_28_923532 940 2 , , , 10_1101-2020_01_28_923532 940 3 A.J. A.J. NNP 10_1101-2020_01_28_923532 940 4 , , , 10_1101-2020_01_28_923532 940 5 et et NNP 10_1101-2020_01_28_923532 940 6 al al NNP 10_1101-2020_01_28_923532 940 7 . . . 10_1101-2020_01_28_923532 941 1 Identification identification NN 10_1101-2020_01_28_923532 941 2 of of IN 10_1101-2020_01_28_923532 941 3 grade grade NN 10_1101-2020_01_28_923532 941 4 and and CC 10_1101-2020_01_28_923532 941 5 origin origin NN 10_1101-2020_01_28_923532 941 6 specific specific JJ 10_1101-2020_01_28_923532 941 7 cell cell NN 10_1101-2020_01_28_923532 941 8 populations population NNS 10_1101-2020_01_28_923532 941 9 in in IN 10_1101-2020_01_28_923532 941 10 serous serous JJ 10_1101-2020_01_28_923532 941 11 epithelial epithelial JJ 10_1101-2020_01_28_923532 941 12 ovarian ovarian JJ 10_1101-2020_01_28_923532 941 13 cancer cancer NN 10_1101-2020_01_28_923532 941 14 by by IN 10_1101-2020_01_28_923532 941 15 single single JJ 10_1101-2020_01_28_923532 941 16 cell cell NN 10_1101-2020_01_28_923532 941 17 RNA RNA NNP 10_1101-2020_01_28_923532 941 18 - - HYPH 10_1101-2020_01_28_923532 941 19 seq seq NNP 10_1101-2020_01_28_923532 941 20 . . . 10_1101-2020_01_28_923532 942 1 PLoS PLoS : 10_1101-2020_01_28_923532 942 2 ONE one CD 10_1101-2020_01_28_923532 942 3 13(11 13(11 CD 10_1101-2020_01_28_923532 942 4 ) ) -RRB- 10_1101-2020_01_28_923532 942 5 , , , 10_1101-2020_01_28_923532 942 6 e0208778 e0208778 NNP 10_1101-2020_01_28_923532 942 7 ( ( -LRB- 10_1101-2020_01_28_923532 942 8 2018 2018 CD 10_1101-2020_01_28_923532 942 9 ) ) -RRB- 10_1101-2020_01_28_923532 942 10 . . . 10_1101-2020_01_28_923532 943 1 73 73 CD 10_1101-2020_01_28_923532 943 2 . . . 10_1101-2020_01_28_923532 944 1 Miyamoto Miyamoto NNP 10_1101-2020_01_28_923532 944 2 , , , 10_1101-2020_01_28_923532 944 3 D.T. D.T. NNP 10_1101-2020_01_28_923532 944 4 , , , 10_1101-2020_01_28_923532 944 5 et et NNP 10_1101-2020_01_28_923532 944 6 al al NNP 10_1101-2020_01_28_923532 944 7 . . . 10_1101-2020_01_28_923532 945 1 RNA RNA NNP 10_1101-2020_01_28_923532 945 2 - - HYPH 10_1101-2020_01_28_923532 945 3 Seq Seq NNP 10_1101-2020_01_28_923532 945 4 of of IN 10_1101-2020_01_28_923532 945 5 single single JJ 10_1101-2020_01_28_923532 945 6 prostate prostate NN 10_1101-2020_01_28_923532 945 7 CTCs ctc NNS 10_1101-2020_01_28_923532 945 8 implicates implicate VBZ 10_1101-2020_01_28_923532 945 9 noncanonical noncanonical JJ 10_1101-2020_01_28_923532 945 10 Wnt Wnt NNP 10_1101-2020_01_28_923532 945 11 signaling signal VBG 10_1101-2020_01_28_923532 945 12 in in IN 10_1101-2020_01_28_923532 945 13 antiandrogen antiandrogen NN 10_1101-2020_01_28_923532 945 14 resistance resistance NN 10_1101-2020_01_28_923532 945 15 . . . 10_1101-2020_01_28_923532 946 1 Science science NN 10_1101-2020_01_28_923532 946 2 349 349 CD 10_1101-2020_01_28_923532 946 3 , , , 10_1101-2020_01_28_923532 946 4 1351 1351 CD 10_1101-2020_01_28_923532 946 5 - - SYM 10_1101-2020_01_28_923532 946 6 1356 1356 CD 10_1101-2020_01_28_923532 946 7 ( ( -LRB- 10_1101-2020_01_28_923532 946 8 2015 2015 CD 10_1101-2020_01_28_923532 946 9 ) ) -RRB- 10_1101-2020_01_28_923532 946 10 . . . 10_1101-2020_01_28_923532 947 1 74 74 CD 10_1101-2020_01_28_923532 947 2 . . . 10_1101-2020_01_28_923532 948 1 Lambrechts Lambrechts NNP 10_1101-2020_01_28_923532 948 2 , , , 10_1101-2020_01_28_923532 948 3 D. D. NNP 10_1101-2020_01_28_923532 948 4 , , , 10_1101-2020_01_28_923532 948 5 et et NNP 10_1101-2020_01_28_923532 948 6 al al NNP 10_1101-2020_01_28_923532 948 7 . . . 10_1101-2020_01_28_923532 949 1 Phenotype phenotype NN 10_1101-2020_01_28_923532 949 2 molding molding NN 10_1101-2020_01_28_923532 949 3 of of IN 10_1101-2020_01_28_923532 949 4 stromal stromal JJ 10_1101-2020_01_28_923532 949 5 cells cell NNS 10_1101-2020_01_28_923532 949 6 in in IN 10_1101-2020_01_28_923532 949 7 the the DT 10_1101-2020_01_28_923532 949 8 lung lung NN 10_1101-2020_01_28_923532 949 9 tumor tumor NN 10_1101-2020_01_28_923532 949 10 microenvironment microenvironment NNP 10_1101-2020_01_28_923532 949 11 . . . 10_1101-2020_01_28_923532 950 1 Nat Nat NNP 10_1101-2020_01_28_923532 950 2 . . . 10_1101-2020_01_28_923532 951 1 Med Med NNP 10_1101-2020_01_28_923532 951 2 . . . 10_1101-2020_01_28_923532 952 1 24 24 CD 10_1101-2020_01_28_923532 952 2 , , , 10_1101-2020_01_28_923532 952 3 1277 1277 CD 10_1101-2020_01_28_923532 952 4 - - SYM 10_1101-2020_01_28_923532 952 5 1289 1289 CD 10_1101-2020_01_28_923532 952 6 ( ( -LRB- 10_1101-2020_01_28_923532 952 7 2018 2018 CD 10_1101-2020_01_28_923532 952 8 ) ) -RRB- 10_1101-2020_01_28_923532 952 9 . . . 10_1101-2020_01_28_923532 953 1 75 75 CD 10_1101-2020_01_28_923532 953 2 . . . 10_1101-2020_01_28_923532 954 1 Uhlén Uhlén NNP 10_1101-2020_01_28_923532 954 2 , , , 10_1101-2020_01_28_923532 954 3 M. M. NNP 10_1101-2020_01_28_923532 954 4 , , , 10_1101-2020_01_28_923532 954 5 et et NNP 10_1101-2020_01_28_923532 954 6 al al NNP 10_1101-2020_01_28_923532 954 7 . . . 10_1101-2020_01_28_923532 955 1 Tissue tissue NN 10_1101-2020_01_28_923532 955 2 - - HYPH 10_1101-2020_01_28_923532 955 3 based base VBN 10_1101-2020_01_28_923532 955 4 map map NN 10_1101-2020_01_28_923532 955 5 of of IN 10_1101-2020_01_28_923532 955 6 the the DT 10_1101-2020_01_28_923532 955 7 human human JJ 10_1101-2020_01_28_923532 955 8 proteome proteome NN 10_1101-2020_01_28_923532 955 9 . . . 10_1101-2020_01_28_923532 956 1 Science Science NNP 10_1101-2020_01_28_923532 956 2 347(6220 347(6220 NNP 10_1101-2020_01_28_923532 956 3 ) ) -RRB- 10_1101-2020_01_28_923532 956 4 , , , 10_1101-2020_01_28_923532 956 5 1260419 1260419 CD 10_1101-2020_01_28_923532 956 6 ( ( -LRB- 10_1101-2020_01_28_923532 956 7 2015 2015 CD 10_1101-2020_01_28_923532 956 8 ) ) -RRB- 10_1101-2020_01_28_923532 956 9 . . . 10_1101-2020_01_28_923532 957 1 76 76 CD 10_1101-2020_01_28_923532 957 2 . . . 10_1101-2020_01_28_923532 958 1 The the DT 10_1101-2020_01_28_923532 958 2 GTEx GTEx NNP 10_1101-2020_01_28_923532 958 3 Consortium Consortium NNP 10_1101-2020_01_28_923532 958 4 . . . 10_1101-2020_01_28_923532 959 1 The the DT 10_1101-2020_01_28_923532 959 2 genotype genotype NN 10_1101-2020_01_28_923532 959 3 - - HYPH 10_1101-2020_01_28_923532 959 4 tissue tissue NN 10_1101-2020_01_28_923532 959 5 expression expression NN 10_1101-2020_01_28_923532 959 6 ( ( -LRB- 10_1101-2020_01_28_923532 959 7 GTEx GTEx NNP 10_1101-2020_01_28_923532 959 8 ) ) -RRB- 10_1101-2020_01_28_923532 959 9 project project NN 10_1101-2020_01_28_923532 959 10 . . . 10_1101-2020_01_28_923532 960 1 Nat Nat NNP 10_1101-2020_01_28_923532 960 2 . . . 10_1101-2020_01_28_923532 961 1 Genet Genet NNP 10_1101-2020_01_28_923532 961 2 . . . 10_1101-2020_01_28_923532 962 1 45(6 45(6 LS 10_1101-2020_01_28_923532 962 2 ) ) -RRB- 10_1101-2020_01_28_923532 962 3 , , , 10_1101-2020_01_28_923532 962 4 580 580 CD 10_1101-2020_01_28_923532 962 5 - - SYM 10_1101-2020_01_28_923532 962 6 585 585 CD 10_1101-2020_01_28_923532 962 7 ( ( -LRB- 10_1101-2020_01_28_923532 962 8 2013 2013 CD 10_1101-2020_01_28_923532 962 9 ) ) -RRB- 10_1101-2020_01_28_923532 962 10 . . . 10_1101-2020_01_28_923532 963 1 77 77 CD 10_1101-2020_01_28_923532 963 2 . . . 10_1101-2020_01_28_923532 964 1 Bausch Bausch NNP 10_1101-2020_01_28_923532 964 2 - - HYPH 10_1101-2020_01_28_923532 964 3 Fluck Fluck NNP 10_1101-2020_01_28_923532 964 4 , , , 10_1101-2020_01_28_923532 964 5 D. D. NNP 10_1101-2020_01_28_923532 964 6 , , , 10_1101-2020_01_28_923532 964 7 et et NNP 10_1101-2020_01_28_923532 964 8 al al NNP 10_1101-2020_01_28_923532 964 9 . . . 10_1101-2020_01_28_923532 965 1 The the DT 10_1101-2020_01_28_923532 965 2 in in IN 10_1101-2020_01_28_923532 965 3 silico silico NNP 10_1101-2020_01_28_923532 965 4 human human JJ 10_1101-2020_01_28_923532 965 5 surfaceome surfaceome NN 10_1101-2020_01_28_923532 965 6 . . . 10_1101-2020_01_28_923532 966 1 Proc Proc NNP 10_1101-2020_01_28_923532 966 2 . . . 10_1101-2020_01_28_923532 967 1 Natl Natl NNP 10_1101-2020_01_28_923532 967 2 . . . 10_1101-2020_01_28_923532 968 1 Acad Acad NNS 10_1101-2020_01_28_923532 968 2 . . . 10_1101-2020_01_28_923532 969 1 Sci Sci NNP 10_1101-2020_01_28_923532 969 2 USA USA NNP 10_1101-2020_01_28_923532 969 3 115 115 CD 10_1101-2020_01_28_923532 969 4 , , , 10_1101-2020_01_28_923532 969 5 E10988-E10997 E10988-E10997 NNP 10_1101-2020_01_28_923532 969 6 ( ( -LRB- 10_1101-2020_01_28_923532 969 7 2018 2018 CD 10_1101-2020_01_28_923532 969 8 ) ) -RRB- 10_1101-2020_01_28_923532 969 9 . . . 10_1101-2020_01_28_923532 970 1 78 78 CD 10_1101-2020_01_28_923532 970 2 . . . 10_1101-2020_01_28_923532 971 1 Gainer Gainer NNP 10_1101-2020_01_28_923532 971 2 - - HYPH 10_1101-2020_01_28_923532 971 3 Dewar Dewar NNP 10_1101-2020_01_28_923532 971 4 , , , 10_1101-2020_01_28_923532 971 5 A. a. NN 10_1101-2020_01_28_923532 972 1 & & CC 10_1101-2020_01_28_923532 972 2 Vera Vera NNP 10_1101-2020_01_28_923532 972 3 - - HYPH 10_1101-2020_01_28_923532 972 4 Lincona Lincona NNP 10_1101-2020_01_28_923532 972 5 , , , 10_1101-2020_01_28_923532 972 6 P. P. NNP 10_1101-2020_01_28_923532 972 7 The the DT 10_1101-2020_01_28_923532 972 8 minimal minimal JJ 10_1101-2020_01_28_923532 972 9 hitting hit VBG 10_1101-2020_01_28_923532 972 10 set set NN 10_1101-2020_01_28_923532 972 11 generation generation NN 10_1101-2020_01_28_923532 972 12 problem problem NN 10_1101-2020_01_28_923532 972 13 : : : 10_1101-2020_01_28_923532 972 14 Algorithms Algorithms NNP 10_1101-2020_01_28_923532 972 15 and and CC 10_1101-2020_01_28_923532 972 16 computation computation NN 10_1101-2020_01_28_923532 972 17 . . . 10_1101-2020_01_28_923532 973 1 SIAM SIAM NNP 10_1101-2020_01_28_923532 973 2 J. J. NNP 10_1101-2020_01_28_923532 973 3 Discr Discr NNP 10_1101-2020_01_28_923532 973 4 . . . 10_1101-2020_01_28_923532 974 1 Math math NN 10_1101-2020_01_28_923532 974 2 . . . 10_1101-2020_01_28_923532 975 1 31 31 CD 10_1101-2020_01_28_923532 975 2 , , , 10_1101-2020_01_28_923532 975 3 63 63 CD 10_1101-2020_01_28_923532 975 4 - - SYM 10_1101-2020_01_28_923532 975 5 100 100 CD 10_1101-2020_01_28_923532 975 6 ( ( -LRB- 10_1101-2020_01_28_923532 975 7 2017 2017 CD 10_1101-2020_01_28_923532 975 8 ) ) -RRB- 10_1101-2020_01_28_923532 975 9 . . . 10_1101-2020_01_28_923532 976 1 79 79 CD 10_1101-2020_01_28_923532 976 2 . . . 10_1101-2020_01_28_923532 977 1 Haedlicke Haedlicke NNP 10_1101-2020_01_28_923532 977 2 , , , 10_1101-2020_01_28_923532 977 3 O. O. NNP 10_1101-2020_01_28_923532 978 1 & & CC 10_1101-2020_01_28_923532 978 2 Klamt Klamt NNP 10_1101-2020_01_28_923532 978 3 , , , 10_1101-2020_01_28_923532 978 4 S. S. NNP 10_1101-2020_01_28_923532 978 5 Computing Computing NNP 10_1101-2020_01_28_923532 978 6 complex complex JJ 10_1101-2020_01_28_923532 978 7 metabolic metabolic JJ 10_1101-2020_01_28_923532 978 8 intervention intervention NN 10_1101-2020_01_28_923532 978 9 strategies strategy NNS 10_1101-2020_01_28_923532 978 10 using use VBG 10_1101-2020_01_28_923532 978 11 constrained constrain VBN 10_1101-2020_01_28_923532 978 12 minimal minimal JJ 10_1101-2020_01_28_923532 978 13 cut cut NN 10_1101-2020_01_28_923532 978 14 sets set NNS 10_1101-2020_01_28_923532 978 15 . . . 10_1101-2020_01_28_923532 979 1 Metabolic Metabolic NNP 10_1101-2020_01_28_923532 979 2 Eng Eng NNP 10_1101-2020_01_28_923532 979 3 . . . 10_1101-2020_01_28_923532 980 1 13 13 CD 10_1101-2020_01_28_923532 980 2 , , , 10_1101-2020_01_28_923532 980 3 204 204 CD 10_1101-2020_01_28_923532 980 4 - - SYM 10_1101-2020_01_28_923532 980 5 213 213 CD 10_1101-2020_01_28_923532 980 6 ( ( -LRB- 10_1101-2020_01_28_923532 980 7 2011 2011 CD 10_1101-2020_01_28_923532 980 8 ) ) -RRB- 10_1101-2020_01_28_923532 980 9 . . . 10_1101-2020_01_28_923532 981 1 80 80 CD 10_1101-2020_01_28_923532 981 2 . . . 10_1101-2020_01_28_923532 982 1 Haus Haus NNP 10_1101-2020_01_28_923532 982 2 , , , 10_1101-2020_01_28_923532 982 3 U.-U. U.-U. NNP 10_1101-2020_01_28_923532 982 4 , , , 10_1101-2020_01_28_923532 982 5 Klamt Klamt NNP 10_1101-2020_01_28_923532 982 6 , , , 10_1101-2020_01_28_923532 982 7 S. S. NNP 10_1101-2020_01_28_923532 982 8 & & CC 10_1101-2020_01_28_923532 982 9 Stephen Stephen NNP 10_1101-2020_01_28_923532 982 10 , , , 10_1101-2020_01_28_923532 982 11 T. T. NNP 10_1101-2020_01_28_923532 982 12 Computing Computing NNP 10_1101-2020_01_28_923532 982 13 knock knock NN 10_1101-2020_01_28_923532 982 14 - - HYPH 10_1101-2020_01_28_923532 982 15 out out RP 10_1101-2020_01_28_923532 982 16 strategies strategy NNS 10_1101-2020_01_28_923532 982 17 in in IN 10_1101-2020_01_28_923532 982 18 metabolic metabolic JJ 10_1101-2020_01_28_923532 982 19 networks network NNS 10_1101-2020_01_28_923532 982 20 . . . 10_1101-2020_01_28_923532 983 1 J. J. NNP 10_1101-2020_01_28_923532 983 2 Comput Comput NNP 10_1101-2020_01_28_923532 983 3 . . . 10_1101-2020_01_28_923532 984 1 Biol Biol NNP 10_1101-2020_01_28_923532 984 2 . . . 10_1101-2020_01_28_923532 985 1 15(3 15(3 LS 10_1101-2020_01_28_923532 985 2 ) ) -RRB- 10_1101-2020_01_28_923532 985 3 , , , 10_1101-2020_01_28_923532 985 4 259 259 CD 10_1101-2020_01_28_923532 985 5 - - SYM 10_1101-2020_01_28_923532 985 6 268 268 CD 10_1101-2020_01_28_923532 985 7 ( ( -LRB- 10_1101-2020_01_28_923532 985 8 2008 2008 CD 10_1101-2020_01_28_923532 985 9 ) ) -RRB- 10_1101-2020_01_28_923532 985 10 . . . 10_1101-2020_01_28_923532 986 1 81 81 CD 10_1101-2020_01_28_923532 986 2 . . . 10_1101-2020_01_28_923532 987 1 Jarrah Jarrah NNP 10_1101-2020_01_28_923532 987 2 , , , 10_1101-2020_01_28_923532 987 3 A.S. A.S. NNP 10_1101-2020_01_28_923532 987 4 , , , 10_1101-2020_01_28_923532 987 5 Laubenbacher Laubenbacher NNP 10_1101-2020_01_28_923532 987 6 , , , 10_1101-2020_01_28_923532 987 7 R. R. NNP 10_1101-2020_01_28_923532 987 8 , , , 10_1101-2020_01_28_923532 987 9 Stigler Stigler NNP 10_1101-2020_01_28_923532 987 10 , , , 10_1101-2020_01_28_923532 987 11 B. B. NNP 10_1101-2020_01_28_923532 988 1 & & CC 10_1101-2020_01_28_923532 988 2 Stillman Stillman NNP 10_1101-2020_01_28_923532 988 3 , , , 10_1101-2020_01_28_923532 988 4 M. M. NNP 10_1101-2020_01_28_923532 988 5 Reverse Reverse NNP 10_1101-2020_01_28_923532 988 6 - - HYPH 10_1101-2020_01_28_923532 988 7 engineering engineering NN 10_1101-2020_01_28_923532 988 8 of of IN 10_1101-2020_01_28_923532 988 9 polynomial polynomial JJ 10_1101-2020_01_28_923532 988 10 dynamical dynamical JJ 10_1101-2020_01_28_923532 988 11 systems system NNS 10_1101-2020_01_28_923532 988 12 . . . 10_1101-2020_01_28_923532 989 1 Adv Adv NNP 10_1101-2020_01_28_923532 989 2 . . . 10_1101-2020_01_28_923532 990 1 Appl Appl NNP 10_1101-2020_01_28_923532 990 2 . . . 10_1101-2020_01_28_923532 991 1 Math math NN 10_1101-2020_01_28_923532 991 2 . . . 10_1101-2020_01_28_923532 992 1 39 39 CD 10_1101-2020_01_28_923532 992 2 , , , 10_1101-2020_01_28_923532 992 3 477 477 CD 10_1101-2020_01_28_923532 992 4 - - SYM 10_1101-2020_01_28_923532 992 5 489 489 CD 10_1101-2020_01_28_923532 992 6 ( ( -LRB- 10_1101-2020_01_28_923532 992 7 2007 2007 CD 10_1101-2020_01_28_923532 992 8 ) ) -RRB- 10_1101-2020_01_28_923532 992 9 . . . 10_1101-2020_01_28_923532 993 1 82 82 CD 10_1101-2020_01_28_923532 993 2 . . . 10_1101-2020_01_28_923532 994 1 Klamt Klamt NNP 10_1101-2020_01_28_923532 994 2 , , , 10_1101-2020_01_28_923532 994 3 S. S. NNP 10_1101-2020_01_28_923532 994 4 & & CC 10_1101-2020_01_28_923532 994 5 Gilles Gilles NNP 10_1101-2020_01_28_923532 994 6 , , , 10_1101-2020_01_28_923532 994 7 E.D. E.D. NNP 10_1101-2020_01_28_923532 995 1 Minimal minimal JJ 10_1101-2020_01_28_923532 995 2 cut cut VBD 10_1101-2020_01_28_923532 995 3 sets set NNS 10_1101-2020_01_28_923532 995 4 in in IN 10_1101-2020_01_28_923532 995 5 biochemical biochemical JJ 10_1101-2020_01_28_923532 995 6 reaction reaction NN 10_1101-2020_01_28_923532 995 7 networks network NNS 10_1101-2020_01_28_923532 995 8 . . . 10_1101-2020_01_28_923532 996 1 Bioinformatics Bioinformatics NNP 10_1101-2020_01_28_923532 996 2 20 20 CD 10_1101-2020_01_28_923532 996 3 , , , 10_1101-2020_01_28_923532 996 4 226 226 CD 10_1101-2020_01_28_923532 996 5 - - HYPH 10_1101-2020_01_28_923532 996 6 234 234 CD 10_1101-2020_01_28_923532 996 7 ( ( -LRB- 10_1101-2020_01_28_923532 996 8 2004 2004 CD 10_1101-2020_01_28_923532 996 9 ) ) -RRB- 10_1101-2020_01_28_923532 996 10 . . . 10_1101-2020_01_28_923532 997 1 105 105 CD 10_1101-2020_01_28_923532 997 2 and and CC 10_1101-2020_01_28_923532 997 3 is be VBZ 10_1101-2020_01_28_923532 997 4 also also RB 10_1101-2020_01_28_923532 997 5 made make VBN 10_1101-2020_01_28_923532 997 6 available available JJ 10_1101-2020_01_28_923532 997 7 for for IN 10_1101-2020_01_28_923532 997 8 use use NN 10_1101-2020_01_28_923532 997 9 under under IN 10_1101-2020_01_28_923532 997 10 a a DT 10_1101-2020_01_28_923532 997 11 CC0 CC0 NNP 10_1101-2020_01_28_923532 997 12 license license NN 10_1101-2020_01_28_923532 997 13 . . . 10_1101-2020_01_28_923532 998 1 ( ( -LRB- 10_1101-2020_01_28_923532 998 2 which which WDT 10_1101-2020_01_28_923532 998 3 was be VBD 10_1101-2020_01_28_923532 998 4 not not RB 10_1101-2020_01_28_923532 998 5 certified certify VBN 10_1101-2020_01_28_923532 998 6 by by IN 10_1101-2020_01_28_923532 998 7 peer peer NN 10_1101-2020_01_28_923532 998 8 review review NN 10_1101-2020_01_28_923532 998 9 ) ) -RRB- 10_1101-2020_01_28_923532 998 10 is be VBZ 10_1101-2020_01_28_923532 998 11 the the DT 10_1101-2020_01_28_923532 998 12 author author NN 10_1101-2020_01_28_923532 998 13 / / SYM 10_1101-2020_01_28_923532 998 14 funder funder NN 10_1101-2020_01_28_923532 998 15 . . . 10_1101-2020_01_28_923532 999 1 This this DT 10_1101-2020_01_28_923532 999 2 article article NN 10_1101-2020_01_28_923532 999 3 is be VBZ 10_1101-2020_01_28_923532 999 4 a a DT 10_1101-2020_01_28_923532 999 5 US US NNP 10_1101-2020_01_28_923532 999 6 Government Government NNP 10_1101-2020_01_28_923532 999 7 work work NN 10_1101-2020_01_28_923532 999 8 . . . 10_1101-2020_01_28_923532 1000 1 It -PRON- PRP 10_1101-2020_01_28_923532 1000 2 is be VBZ 10_1101-2020_01_28_923532 1000 3 not not RB 10_1101-2020_01_28_923532 1000 4 subject subject JJ 10_1101-2020_01_28_923532 1000 5 to to IN 10_1101-2020_01_28_923532 1000 6 copyright copyright NN 10_1101-2020_01_28_923532 1000 7 under under IN 10_1101-2020_01_28_923532 1000 8 17 17 CD 10_1101-2020_01_28_923532 1000 9 USC usc NN 10_1101-2020_01_28_923532 1000 10 The the DT 10_1101-2020_01_28_923532 1000 11 copyright copyright NN 10_1101-2020_01_28_923532 1000 12 holder holder NN 10_1101-2020_01_28_923532 1000 13 for for IN 10_1101-2020_01_28_923532 1000 14 this this DT 10_1101-2020_01_28_923532 1000 15 preprintthis preprintthis NN 10_1101-2020_01_28_923532 1000 16 version version NN 10_1101-2020_01_28_923532 1000 17 posted post VBD 10_1101-2020_01_28_923532 1000 18 February February NNP 10_1101-2020_01_28_923532 1000 19 12 12 CD 10_1101-2020_01_28_923532 1000 20 , , , 10_1101-2020_01_28_923532 1000 21 2021 2021 CD 10_1101-2020_01_28_923532 1000 22 . . . 10_1101-2020_01_28_923532 1000 23 ; ; : 10_1101-2020_01_28_923532 1000 24 https://doi.org/10.1101/2020.01.28.923532doi https://doi.org/10.1101/2020.01.28.923532doi ADD 10_1101-2020_01_28_923532 1000 25 : : : 10_1101-2020_01_28_923532 1000 26 bioRxiv biorxiv VB 10_1101-2020_01_28_923532 1000 27 preprint preprint NN 10_1101-2020_01_28_923532 1000 28 https://doi.org/10.1101/2020.01.28.923532 https://doi.org/10.1101/2020.01.28.923532 UH 10_1101-2020_01_28_923532 1000 29 46 46 CD 10_1101-2020_01_28_923532 1000 30 83 83 CD 10_1101-2020_01_28_923532 1000 31 . . . 10_1101-2020_01_28_923532 1001 1 Trinh Trinh NNP 10_1101-2020_01_28_923532 1001 2 , , , 10_1101-2020_01_28_923532 1001 3 C.T. C.T. NNP 10_1101-2020_01_28_923532 1001 4 , , , 10_1101-2020_01_28_923532 1001 5 Wlaschin Wlaschin NNP 10_1101-2020_01_28_923532 1001 6 , , , 10_1101-2020_01_28_923532 1001 7 A. a. NN 10_1101-2020_01_28_923532 1002 1 & & CC 10_1101-2020_01_28_923532 1002 2 Srienc Srienc NNP 10_1101-2020_01_28_923532 1002 3 F. F. NNP 10_1101-2020_01_28_923532 1002 4 Elementary Elementary NNP 10_1101-2020_01_28_923532 1002 5 mode mode NN 10_1101-2020_01_28_923532 1002 6 analysis analysis NN 10_1101-2020_01_28_923532 1002 7 : : : 10_1101-2020_01_28_923532 1002 8 a a DT 10_1101-2020_01_28_923532 1002 9 useful useful JJ 10_1101-2020_01_28_923532 1002 10 metabolic metabolic JJ 10_1101-2020_01_28_923532 1002 11 pathway pathway NN 10_1101-2020_01_28_923532 1002 12 analysis analysis NN 10_1101-2020_01_28_923532 1002 13 tool tool NN 10_1101-2020_01_28_923532 1002 14 for for IN 10_1101-2020_01_28_923532 1002 15 characterizing characterize VBG 10_1101-2020_01_28_923532 1002 16 cellular cellular JJ 10_1101-2020_01_28_923532 1002 17 metabolism metabolism NN 10_1101-2020_01_28_923532 1002 18 . . . 10_1101-2020_01_28_923532 1003 1 Appl Appl NNP 10_1101-2020_01_28_923532 1003 2 . . . 10_1101-2020_01_28_923532 1004 1 Microbiol Microbiol NNP 10_1101-2020_01_28_923532 1004 2 . . . 10_1101-2020_01_28_923532 1005 1 Biotech Biotech NNP 10_1101-2020_01_28_923532 1005 2 . . . 10_1101-2020_01_28_923532 1006 1 81 81 CD 10_1101-2020_01_28_923532 1006 2 , , , 10_1101-2020_01_28_923532 1006 3 813 813 CD 10_1101-2020_01_28_923532 1006 4 - - HYPH 10_1101-2020_01_28_923532 1006 5 826 826 CD 10_1101-2020_01_28_923532 1006 6 ( ( -LRB- 10_1101-2020_01_28_923532 1006 7 2009 2009 CD 10_1101-2020_01_28_923532 1006 8 ) ) -RRB- 10_1101-2020_01_28_923532 1006 9 . . . 10_1101-2020_01_28_923532 1007 1 84 84 CD 10_1101-2020_01_28_923532 1007 2 . . . 10_1101-2020_01_28_923532 1008 1 Ideker Ideker NNP 10_1101-2020_01_28_923532 1008 2 , , , 10_1101-2020_01_28_923532 1008 3 T. T. NNP 10_1101-2020_01_28_923532 1008 4 Discovery Discovery NNP 10_1101-2020_01_28_923532 1008 5 of of IN 10_1101-2020_01_28_923532 1008 6 regulatory regulatory JJ 10_1101-2020_01_28_923532 1008 7 interactions interaction NNS 10_1101-2020_01_28_923532 1008 8 through through IN 10_1101-2020_01_28_923532 1008 9 perturbation perturbation NN 10_1101-2020_01_28_923532 1008 10 : : : 10_1101-2020_01_28_923532 1008 11 inference inference NN 10_1101-2020_01_28_923532 1008 12 and and CC 10_1101-2020_01_28_923532 1008 13 experimental experimental JJ 10_1101-2020_01_28_923532 1008 14 design design NN 10_1101-2020_01_28_923532 1008 15 . . . 10_1101-2020_01_28_923532 1009 1 Pac Pac NNP 10_1101-2020_01_28_923532 1009 2 . . . 10_1101-2020_01_28_923532 1010 1 Symp Symp VBN 10_1101-2020_01_28_923532 1010 2 . . . 10_1101-2020_01_28_923532 1011 1 Biocomput biocomput NN 10_1101-2020_01_28_923532 1011 2 . . . 10_1101-2020_01_28_923532 1012 1 5 5 CD 10_1101-2020_01_28_923532 1012 2 , , , 10_1101-2020_01_28_923532 1012 3 302 302 CD 10_1101-2020_01_28_923532 1012 4 - - HYPH 10_1101-2020_01_28_923532 1012 5 313 313 CD 10_1101-2020_01_28_923532 1012 6 ( ( -LRB- 10_1101-2020_01_28_923532 1012 7 2000 2000 CD 10_1101-2020_01_28_923532 1012 8 ) ) -RRB- 10_1101-2020_01_28_923532 1012 9 . . . 10_1101-2020_01_28_923532 1013 1 85 85 CD 10_1101-2020_01_28_923532 1013 2 . . . 10_1101-2020_01_28_923532 1014 1 Wang Wang NNP 10_1101-2020_01_28_923532 1014 2 , , , 10_1101-2020_01_28_923532 1014 3 R.S. R.S. NNP 10_1101-2020_01_28_923532 1015 1 & & CC 10_1101-2020_01_28_923532 1015 2 Albert Albert NNP 10_1101-2020_01_28_923532 1015 3 , , , 10_1101-2020_01_28_923532 1015 4 R. R. NNP 10_1101-2020_01_28_923532 1015 5 Elementary Elementary NNP 10_1101-2020_01_28_923532 1015 6 signaling signal VBG 10_1101-2020_01_28_923532 1015 7 modes mode NNS 10_1101-2020_01_28_923532 1015 8 predict predict VBP 10_1101-2020_01_28_923532 1015 9 the the DT 10_1101-2020_01_28_923532 1015 10 essentiality essentiality NN 10_1101-2020_01_28_923532 1015 11 of of IN 10_1101-2020_01_28_923532 1015 12 signal signal NNP 10_1101-2020_01_28_923532 1015 13 transduction transduction NNP 10_1101-2020_01_28_923532 1015 14 network network NN 10_1101-2020_01_28_923532 1015 15 components component NNS 10_1101-2020_01_28_923532 1015 16 . . . 10_1101-2020_01_28_923532 1016 1 BMC BMC NNP 10_1101-2020_01_28_923532 1016 2 Syst Syst NNP 10_1101-2020_01_28_923532 1016 3 . . . 10_1101-2020_01_28_923532 1017 1 Biol Biol NNP 10_1101-2020_01_28_923532 1017 2 . . . 10_1101-2020_01_28_923532 1018 1 5 5 CD 10_1101-2020_01_28_923532 1018 2 , , , 10_1101-2020_01_28_923532 1018 3 44 44 CD 10_1101-2020_01_28_923532 1018 4 ( ( -LRB- 10_1101-2020_01_28_923532 1018 5 2011 2011 CD 10_1101-2020_01_28_923532 1018 6 ) ) -RRB- 10_1101-2020_01_28_923532 1018 7 . . . 10_1101-2020_01_28_923532 1019 1 86 86 CD 10_1101-2020_01_28_923532 1019 2 . . . 10_1101-2020_01_28_923532 1020 1 Zvedei Zvedei NNP 10_1101-2020_01_28_923532 1020 2 - - HYPH 10_1101-2020_01_28_923532 1020 3 Oancea Oancea NNP 10_1101-2020_01_28_923532 1020 4 , , , 10_1101-2020_01_28_923532 1020 5 I. I. NNP 10_1101-2020_01_28_923532 1021 1 & & CC 10_1101-2020_01_28_923532 1021 2 Schuster Schuster NNP 10_1101-2020_01_28_923532 1021 3 , , , 10_1101-2020_01_28_923532 1021 4 S. S. NNP 10_1101-2020_01_28_923532 1021 5 A a DT 10_1101-2020_01_28_923532 1021 6 theoretical theoretical JJ 10_1101-2020_01_28_923532 1021 7 framework framework NN 10_1101-2020_01_28_923532 1021 8 for for IN 10_1101-2020_01_28_923532 1021 9 detecting detect VBG 10_1101-2020_01_28_923532 1021 10 signal signal NN 10_1101-2020_01_28_923532 1021 11 transfer transfer NN 10_1101-2020_01_28_923532 1021 12 routes route NNS 10_1101-2020_01_28_923532 1021 13 in in IN 10_1101-2020_01_28_923532 1021 14 signaling signal VBG 10_1101-2020_01_28_923532 1021 15 networks network NNS 10_1101-2020_01_28_923532 1021 16 . . . 10_1101-2020_01_28_923532 1022 1 Comput comput NN 10_1101-2020_01_28_923532 1022 2 . . . 10_1101-2020_01_28_923532 1023 1 Chem Chem NNP 10_1101-2020_01_28_923532 1023 2 . . . 10_1101-2020_01_28_923532 1024 1 Engineer engineer NN 10_1101-2020_01_28_923532 1024 2 . . . 10_1101-2020_01_28_923532 1025 1 29 29 CD 10_1101-2020_01_28_923532 1025 2 , , , 10_1101-2020_01_28_923532 1025 3 597 597 CD 10_1101-2020_01_28_923532 1025 4 - - HYPH 10_1101-2020_01_28_923532 1025 5 617 617 CD 10_1101-2020_01_28_923532 1025 6 ( ( -LRB- 10_1101-2020_01_28_923532 1025 7 2005 2005 CD 10_1101-2020_01_28_923532 1025 8 ) ) -RRB- 10_1101-2020_01_28_923532 1025 9 . . . 10_1101-2020_01_28_923532 1026 1 87 87 CD 10_1101-2020_01_28_923532 1026 2 . . . 10_1101-2020_01_28_923532 1027 1 Vazquez Vazquez NNP 10_1101-2020_01_28_923532 1027 2 A. A. NNP 10_1101-2020_01_28_923532 1027 3 Optimal Optimal NNP 10_1101-2020_01_28_923532 1027 4 drug drug NN 10_1101-2020_01_28_923532 1027 5 combinations combination NNS 10_1101-2020_01_28_923532 1027 6 and and CC 10_1101-2020_01_28_923532 1027 7 minimal minimal JJ 10_1101-2020_01_28_923532 1027 8 hitting hitting NN 10_1101-2020_01_28_923532 1027 9 sets set NNS 10_1101-2020_01_28_923532 1027 10 . . . 10_1101-2020_01_28_923532 1028 1 BMC BMC NNP 10_1101-2020_01_28_923532 1028 2 Syst Syst NNP 10_1101-2020_01_28_923532 1028 3 . . . 10_1101-2020_01_28_923532 1029 1 Biol Biol NNP 10_1101-2020_01_28_923532 1029 2 . . . 10_1101-2020_01_28_923532 1029 3 , , , 10_1101-2020_01_28_923532 1029 4 3 3 CD 10_1101-2020_01_28_923532 1029 5 , , , 10_1101-2020_01_28_923532 1029 6 81 81 CD 10_1101-2020_01_28_923532 1029 7 ( ( -LRB- 10_1101-2020_01_28_923532 1029 8 2009 2009 CD 10_1101-2020_01_28_923532 1029 9 ) ) -RRB- 10_1101-2020_01_28_923532 1029 10 . . . 10_1101-2020_01_28_923532 1030 1 88 88 CD 10_1101-2020_01_28_923532 1030 2 . . . 10_1101-2020_01_28_923532 1031 1 Mellor Mellor NNP 10_1101-2020_01_28_923532 1031 2 , , , 10_1101-2020_01_28_923532 1031 3 D. D. NNP 10_1101-2020_01_28_923532 1031 4 , , , 10_1101-2020_01_28_923532 1031 5 Prieto Prieto NNP 10_1101-2020_01_28_923532 1031 6 , , , 10_1101-2020_01_28_923532 1031 7 E. E. NNP 10_1101-2020_01_28_923532 1031 8 , , , 10_1101-2020_01_28_923532 1031 9 Mathieson Mathieson NNP 10_1101-2020_01_28_923532 1031 10 , , , 10_1101-2020_01_28_923532 1031 11 L. L. NNP 10_1101-2020_01_28_923532 1031 12 & & CC 10_1101-2020_01_28_923532 1031 13 Moscato Moscato NNP 10_1101-2020_01_28_923532 1031 14 , , , 10_1101-2020_01_28_923532 1031 15 P. P. NNP 10_1101-2020_01_28_923532 1031 16 A A NNP 10_1101-2020_01_28_923532 1031 17 kernelisation kernelisation NN 10_1101-2020_01_28_923532 1031 18 approach approach NN 10_1101-2020_01_28_923532 1031 19 for for IN 10_1101-2020_01_28_923532 1031 20 multiple multiple JJ 10_1101-2020_01_28_923532 1031 21 d- d- XX 10_1101-2020_01_28_923532 1031 22 hitting hit VBG 10_1101-2020_01_28_923532 1031 23 set set VBN 10_1101-2020_01_28_923532 1031 24 and and CC 10_1101-2020_01_28_923532 1031 25 its -PRON- PRP$ 10_1101-2020_01_28_923532 1031 26 application application NN 10_1101-2020_01_28_923532 1031 27 in in IN 10_1101-2020_01_28_923532 1031 28 optimal optimal JJ 10_1101-2020_01_28_923532 1031 29 multi multi JJ 10_1101-2020_01_28_923532 1031 30 - - JJ 10_1101-2020_01_28_923532 1031 31 drug drug JJ 10_1101-2020_01_28_923532 1031 32 therapeutic therapeutic JJ 10_1101-2020_01_28_923532 1031 33 combinations combination NNS 10_1101-2020_01_28_923532 1031 34 . . . 10_1101-2020_01_28_923532 1032 1 PLoS PLoS : 10_1101-2020_01_28_923532 1032 2 ONE one CD 10_1101-2020_01_28_923532 1032 3 5(10 5(10 CD 10_1101-2020_01_28_923532 1032 4 ) ) -RRB- 10_1101-2020_01_28_923532 1032 5 , , , 10_1101-2020_01_28_923532 1032 6 e13055 e13055 NNP 10_1101-2020_01_28_923532 1032 7 ( ( -LRB- 10_1101-2020_01_28_923532 1032 8 2010 2010 CD 10_1101-2020_01_28_923532 1032 9 ) ) -RRB- 10_1101-2020_01_28_923532 1032 10 . . . 10_1101-2020_01_28_923532 1033 1 89 89 CD 10_1101-2020_01_28_923532 1033 2 . . . 10_1101-2020_01_28_923532 1034 1 Vera Vera NNP 10_1101-2020_01_28_923532 1034 2 - - HYPH 10_1101-2020_01_28_923532 1034 3 Licona Licona NNP 10_1101-2020_01_28_923532 1034 4 , , , 10_1101-2020_01_28_923532 1034 5 P. P. NNP 10_1101-2020_01_28_923532 1034 6 , , , 10_1101-2020_01_28_923532 1034 7 Bonnet Bonnet NNP 10_1101-2020_01_28_923532 1034 8 , , , 10_1101-2020_01_28_923532 1034 9 E. E. NNP 10_1101-2020_01_28_923532 1034 10 , , , 10_1101-2020_01_28_923532 1034 11 Brillot Brillot NNP 10_1101-2020_01_28_923532 1034 12 , , , 10_1101-2020_01_28_923532 1034 13 E E NNP 10_1101-2020_01_28_923532 1034 14 & & CC 10_1101-2020_01_28_923532 1034 15 Zinovyev Zinovyev NNP 10_1101-2020_01_28_923532 1034 16 , , , 10_1101-2020_01_28_923532 1034 17 A. A. NNP 10_1101-2020_01_28_923532 1034 18 OCSANA ocsana NN 10_1101-2020_01_28_923532 1034 19 : : : 10_1101-2020_01_28_923532 1034 20 optimal optimal JJ 10_1101-2020_01_28_923532 1034 21 combinations combination NNS 10_1101-2020_01_28_923532 1034 22 of of IN 10_1101-2020_01_28_923532 1034 23 interventions intervention NNS 10_1101-2020_01_28_923532 1034 24 from from IN 10_1101-2020_01_28_923532 1034 25 network network NN 10_1101-2020_01_28_923532 1034 26 analysis analysis NN 10_1101-2020_01_28_923532 1034 27 . . . 10_1101-2020_01_28_923532 1035 1 Bioinformatics Bioinformatics NNP 10_1101-2020_01_28_923532 1035 2 29 29 CD 10_1101-2020_01_28_923532 1035 3 , , , 10_1101-2020_01_28_923532 1035 4 1571 1571 CD 10_1101-2020_01_28_923532 1035 5 - - SYM 10_1101-2020_01_28_923532 1035 6 1573 1573 CD 10_1101-2020_01_28_923532 1035 7 ( ( -LRB- 10_1101-2020_01_28_923532 1035 8 2013 2013 CD 10_1101-2020_01_28_923532 1035 9 ) ) -RRB- 10_1101-2020_01_28_923532 1035 10 . . . 10_1101-2020_01_28_923532 1036 1 90 90 CD 10_1101-2020_01_28_923532 1036 2 . . . 10_1101-2020_01_28_923532 1037 1 Pang Pang NNP 10_1101-2020_01_28_923532 1037 2 , , , 10_1101-2020_01_28_923532 1037 3 K. K. NNP 10_1101-2020_01_28_923532 1037 4 , , , 10_1101-2020_01_28_923532 1037 5 et et NNP 10_1101-2020_01_28_923532 1037 6 al al NNP 10_1101-2020_01_28_923532 1037 7 . . . 10_1101-2020_01_28_923532 1038 1 Combinatorial combinatorial JJ 10_1101-2020_01_28_923532 1038 2 therapy therapy NN 10_1101-2020_01_28_923532 1038 3 discovery discovery NN 10_1101-2020_01_28_923532 1038 4 using use VBG 10_1101-2020_01_28_923532 1038 5 mixed mixed JJ 10_1101-2020_01_28_923532 1038 6 integer integer NN 10_1101-2020_01_28_923532 1038 7 linear linear JJ 10_1101-2020_01_28_923532 1038 8 programming programming NN 10_1101-2020_01_28_923532 1038 9 . . . 10_1101-2020_01_28_923532 1039 1 Bioinformatics Bioinformatics NNP 10_1101-2020_01_28_923532 1039 2 30 30 CD 10_1101-2020_01_28_923532 1039 3 , , , 10_1101-2020_01_28_923532 1039 4 1456 1456 CD 10_1101-2020_01_28_923532 1039 5 - - SYM 10_1101-2020_01_28_923532 1039 6 1463 1463 CD 10_1101-2020_01_28_923532 1039 7 ( ( -LRB- 10_1101-2020_01_28_923532 1039 8 2014 2014 CD 10_1101-2020_01_28_923532 1039 9 ) ) -RRB- 10_1101-2020_01_28_923532 1039 10 . . . 10_1101-2020_01_28_923532 1040 1 91 91 CD 10_1101-2020_01_28_923532 1040 2 . . . 10_1101-2020_01_28_923532 1041 1 Achterberg Achterberg NNP 10_1101-2020_01_28_923532 1041 2 , , , 10_1101-2020_01_28_923532 1041 3 T. T. NNP 10_1101-2020_01_28_923532 1041 4 SCIP SCIP NNP 10_1101-2020_01_28_923532 1041 5 : : : 10_1101-2020_01_28_923532 1041 6 Solving solve VBG 10_1101-2020_01_28_923532 1041 7 constraint constraint NN 10_1101-2020_01_28_923532 1041 8 integer integer NN 10_1101-2020_01_28_923532 1041 9 programs program NNS 10_1101-2020_01_28_923532 1041 10 . . . 10_1101-2020_01_28_923532 1042 1 Math math NN 10_1101-2020_01_28_923532 1042 2 . . . 10_1101-2020_01_28_923532 1043 1 Program program NN 10_1101-2020_01_28_923532 1043 2 . . . 10_1101-2020_01_28_923532 1044 1 Comput comput NN 10_1101-2020_01_28_923532 1044 2 . . . 10_1101-2020_01_28_923532 1045 1 1(1 1(1 NNP 10_1101-2020_01_28_923532 1045 2 ) ) -RRB- 10_1101-2020_01_28_923532 1045 3 , , . 10_1101-2020_01_28_923532 1045 4 1- 1- NNP 10_1101-2020_01_28_923532 1045 5 41 41 CD 10_1101-2020_01_28_923532 1045 6 ( ( -LRB- 10_1101-2020_01_28_923532 1045 7 2009 2009 CD 10_1101-2020_01_28_923532 1045 8 ) ) -RRB- 10_1101-2020_01_28_923532 1045 9 . . . 10_1101-2020_01_28_923532 1046 1 105 105 CD 10_1101-2020_01_28_923532 1046 2 and and CC 10_1101-2020_01_28_923532 1046 3 is be VBZ 10_1101-2020_01_28_923532 1046 4 also also RB 10_1101-2020_01_28_923532 1046 5 made make VBN 10_1101-2020_01_28_923532 1046 6 available available JJ 10_1101-2020_01_28_923532 1046 7 for for IN 10_1101-2020_01_28_923532 1046 8 use use NN 10_1101-2020_01_28_923532 1046 9 under under IN 10_1101-2020_01_28_923532 1046 10 a a DT 10_1101-2020_01_28_923532 1046 11 CC0 CC0 NNP 10_1101-2020_01_28_923532 1046 12 license license NN 10_1101-2020_01_28_923532 1046 13 . . . 10_1101-2020_01_28_923532 1047 1 ( ( -LRB- 10_1101-2020_01_28_923532 1047 2 which which WDT 10_1101-2020_01_28_923532 1047 3 was be VBD 10_1101-2020_01_28_923532 1047 4 not not RB 10_1101-2020_01_28_923532 1047 5 certified certify VBN 10_1101-2020_01_28_923532 1047 6 by by IN 10_1101-2020_01_28_923532 1047 7 peer peer NN 10_1101-2020_01_28_923532 1047 8 review review NN 10_1101-2020_01_28_923532 1047 9 ) ) -RRB- 10_1101-2020_01_28_923532 1047 10 is be VBZ 10_1101-2020_01_28_923532 1047 11 the the DT 10_1101-2020_01_28_923532 1047 12 author author NN 10_1101-2020_01_28_923532 1047 13 / / SYM 10_1101-2020_01_28_923532 1047 14 funder funder NN 10_1101-2020_01_28_923532 1047 15 . . . 10_1101-2020_01_28_923532 1048 1 This this DT 10_1101-2020_01_28_923532 1048 2 article article NN 10_1101-2020_01_28_923532 1048 3 is be VBZ 10_1101-2020_01_28_923532 1048 4 a a DT 10_1101-2020_01_28_923532 1048 5 US US NNP 10_1101-2020_01_28_923532 1048 6 Government Government NNP 10_1101-2020_01_28_923532 1048 7 work work NN 10_1101-2020_01_28_923532 1048 8 . . . 10_1101-2020_01_28_923532 1049 1 It -PRON- PRP 10_1101-2020_01_28_923532 1049 2 is be VBZ 10_1101-2020_01_28_923532 1049 3 not not RB 10_1101-2020_01_28_923532 1049 4 subject subject JJ 10_1101-2020_01_28_923532 1049 5 to to IN 10_1101-2020_01_28_923532 1049 6 copyright copyright NN 10_1101-2020_01_28_923532 1049 7 under under IN 10_1101-2020_01_28_923532 1049 8 17 17 CD 10_1101-2020_01_28_923532 1049 9 USC usc NN 10_1101-2020_01_28_923532 1049 10 The the DT 10_1101-2020_01_28_923532 1049 11 copyright copyright NN 10_1101-2020_01_28_923532 1049 12 holder holder NN 10_1101-2020_01_28_923532 1049 13 for for IN 10_1101-2020_01_28_923532 1049 14 this this DT 10_1101-2020_01_28_923532 1049 15 preprintthis preprintthis NN 10_1101-2020_01_28_923532 1049 16 version version NN 10_1101-2020_01_28_923532 1049 17 posted post VBD 10_1101-2020_01_28_923532 1049 18 February February NNP 10_1101-2020_01_28_923532 1049 19 12 12 CD 10_1101-2020_01_28_923532 1049 20 , , , 10_1101-2020_01_28_923532 1049 21 2021 2021 CD 10_1101-2020_01_28_923532 1049 22 . . . 10_1101-2020_01_28_923532 1049 23 ; ; : 10_1101-2020_01_28_923532 1049 24 https://doi.org/10.1101/2020.01.28.923532doi https://doi.org/10.1101/2020.01.28.923532doi ADD 10_1101-2020_01_28_923532 1049 25 : : : 10_1101-2020_01_28_923532 1049 26 bioRxiv biorxiv VB 10_1101-2020_01_28_923532 1049 27 preprint preprint NN 10_1101-2020_01_28_923532 1049 28 https://doi.org/10.1101/2020.01.28.923532 https://doi.org/10.1101/2020.01.28.923532 XX