id	author	title	date	pages	extension	mime	words	sentences	flesch	summary	cache	txt
10_1101-2021_02_12_431018	Truong Nguyen, Phuoc	HaVoC, a bioinformatic pipeline for reference-based consensus assembly and lineage assignment for SARS-CoV-2 sequences.	2021	14	.pdf	application/pdf	3786	502	61	HaVoC, a bioinformatic pipeline for reference-based consensus assembly and lineage assignment for SARS-CoV-2 sequences. HaVoC, a bioinformatic pipeline for reference-based consensus assembly and lineage 2 Several new variants of SARS-CoV-2 have emerged globally, of which the 18 based assemblies on raw SARS-CoV-2 sequences in addition to identifying lineages to detect 26 variants of concern, we have developed an open source bioinformatic pipeline called HaVoC 27 monitor the spread of SARS-CoV-2 variants of concern during local outbreaks. currently being used in Finland for monitoring the spread of SARS-CoV-2 variants. SARS-CoV2, variant detection, reference assembly, lineage identification, coronavirus, 40 surveillance of virus variants by sequencing the SARS-CoV-2 genomes would provide a fast 80 to query SARS-CoV-2 fastq sequence libraries and assigns lineages to them individually in 92 processing and a reference genome of SARS-CoV-2 in a separate FASTA file. The likelihood of emergence of novel SARS-CoV-2 variants of concern is increased and 209 Emerging SARS-CoV-2 Variants.	./cache/10_1101-2021_02_12_431018.pdf	./txt/10_1101-2021_02_12_431018.txt