id	author	title	date	pages	extension	mime	words	sentences	flesch	summary	cache	txt
10_1101-2021_02_12_430979	Da Silva, Kévin	StrainFLAIR: Strain-level profiling of metagenomic samples using variation graphs	2021	20	.pdf	application/pdf	10624	992	66	StrainFLAIR: Strain-level profiling of metagenomic samples using variation graphs results show that StrainFLAIR was able to distinguish and estimate the abundances of close strains, as approaches to handle multiple similar genomes as with strains use gene clustering and then select the64 StrainFLAIR assigns and estimates species and strain abundances of a bacterial metagenomic sample graph, called the "node abundance", is computed, first focusing on unique mapped reads (first step). Strain-level abundances are then obtained by exploiting the specific genes of each reference genome188 from the reference variation graph thus simulating a new strain to be identified and quantified.231 strains from a sequenced sample, mapped onto this graph.343 Reference strains relative abundances expected and computed by StrainFLAIR or Reference strains relative abundances expected and computed by StrainFLAIR or Reference strains relative abundances expected and computed by StrainFLAIR or Reference strains relative abundances expected and computed by StrainFLAIR or	./cache/10_1101-2021_02_12_430979.pdf	./txt/10_1101-2021_02_12_430979.txt