id	sid	tid	token	lemma	pos
cord-325328-3l3jznkj	1	1	key	key	JJ
cord-325328-3l3jznkj	1	2	:	:	:
cord-325328-3l3jznkj	1	3	cord-325328	cord-325328	NNP
cord-325328-3l3jznkj	1	4	-	-	HYPH
cord-325328-3l3jznkj	1	5	3l3jznkj	3l3jznkj	NNP
cord-325328-3l3jznkj	1	6	authors	author	NNS
cord-325328-3l3jznkj	1	7	:	:	:
cord-325328-3l3jznkj	1	8	Holbrook	Holbrook	NNP
cord-325328-3l3jznkj	1	9	,	,	,
cord-325328-3l3jznkj	1	10	Stephen	Stephen	NNP
cord-325328-3l3jznkj	1	11	R	R	NNP
cord-325328-3l3jznkj	1	12	title	title	NN
cord-325328-3l3jznkj	1	13	:	:	:
cord-325328-3l3jznkj	1	14	RNA	RNA	NNP
cord-325328-3l3jznkj	1	15	structure	structure	NN
cord-325328-3l3jznkj	1	16	:	:	:
cord-325328-3l3jznkj	2	1	the	the	DT
cord-325328-3l3jznkj	2	2	long	long	JJ
cord-325328-3l3jznkj	2	3	and	and	CC
cord-325328-3l3jznkj	2	4	the	the	DT
cord-325328-3l3jznkj	2	5	short	short	NN
cord-325328-3l3jznkj	2	6	of	of	IN
cord-325328-3l3jznkj	2	7	it	-PRON-	PRP
cord-325328-3l3jznkj	2	8	date	date	NN
cord-325328-3l3jznkj	2	9	:	:	:
cord-325328-3l3jznkj	2	10	2005	2005	CD
cord-325328-3l3jznkj	2	11	-	-	HYPH
cord-325328-3l3jznkj	2	12	05	05	CD
cord-325328-3l3jznkj	2	13	-	-	HYPH
cord-325328-3l3jznkj	2	14	16	16	CD
cord-325328-3l3jznkj	2	15	journal	journal	NN
cord-325328-3l3jznkj	2	16	:	:	:
cord-325328-3l3jznkj	3	1	Curr	Curr	NNP
cord-325328-3l3jznkj	3	2	Opin	Opin	NNP
cord-325328-3l3jznkj	3	3	Struct	Struct	NNP
cord-325328-3l3jznkj	3	4	Biol	Biol	NNP
cord-325328-3l3jznkj	3	5	DOI	DOI	NNP
cord-325328-3l3jznkj	3	6	:	:	:
cord-325328-3l3jznkj	3	7	10.1016	10.1016	CD
cord-325328-3l3jznkj	3	8	/	/	SYM
cord-325328-3l3jznkj	3	9	j.sbi.2005.04.005	j.sbi.2005.04.005	NN
cord-325328-3l3jznkj	3	10	sha	sha	NNP
cord-325328-3l3jznkj	3	11	:	:	:
cord-325328-3l3jznkj	4	1	66bad98f0d51b374c6e3f7f0b1c380726e61e38d	66bad98f0d51b374c6e3f7f0b1c380726e61e38d	CD
cord-325328-3l3jznkj	4	2	doc_id	doc_id	CD
cord-325328-3l3jznkj	4	3	:	:	:
cord-325328-3l3jznkj	4	4	325328	325328	CD
cord-325328-3l3jznkj	4	5	cord_uid	cord_uid	NNS
cord-325328-3l3jznkj	4	6	:	:	:
cord-325328-3l3jznkj	5	1	3l3jznkj	3l3jznkj	NNP
cord-325328-3l3jznkj	6	1	The	the	DT
cord-325328-3l3jznkj	6	2	database	database	NN
cord-325328-3l3jznkj	6	3	of	of	IN
cord-325328-3l3jznkj	6	4	RNA	RNA	NNP
cord-325328-3l3jznkj	6	5	structure	structure	NN
cord-325328-3l3jznkj	6	6	has	have	VBZ
cord-325328-3l3jznkj	6	7	grown	grow	VBN
cord-325328-3l3jznkj	6	8	tremendously	tremendously	RB
cord-325328-3l3jznkj	6	9	since	since	IN
cord-325328-3l3jznkj	6	10	the	the	DT
cord-325328-3l3jznkj	6	11	crystal	crystal	NN
cord-325328-3l3jznkj	6	12	structure	structure	NN
cord-325328-3l3jznkj	6	13	analyses	analysis	NNS
cord-325328-3l3jznkj	6	14	of	of	IN
cord-325328-3l3jznkj	6	15	ribosomal	ribosomal	JJ
cord-325328-3l3jznkj	6	16	subunits	subunit	NNS
cord-325328-3l3jznkj	6	17	in	in	IN
cord-325328-3l3jznkj	6	18	2000–2001	2000–2001	CD
cord-325328-3l3jznkj	6	19	.	.	.
cord-325328-3l3jznkj	7	1	During	during	IN
cord-325328-3l3jznkj	7	2	the	the	DT
cord-325328-3l3jznkj	7	3	past	past	JJ
cord-325328-3l3jznkj	7	4	year	year	NN
cord-325328-3l3jznkj	7	5	,	,	,
cord-325328-3l3jznkj	7	6	the	the	DT
cord-325328-3l3jznkj	7	7	trend	trend	NN
cord-325328-3l3jznkj	7	8	toward	toward	IN
cord-325328-3l3jznkj	7	9	determining	determine	VBG
cord-325328-3l3jznkj	7	10	the	the	DT
cord-325328-3l3jznkj	7	11	structure	structure	NN
cord-325328-3l3jznkj	7	12	of	of	IN
cord-325328-3l3jznkj	7	13	large	large	JJ
cord-325328-3l3jznkj	7	14	,	,	,
cord-325328-3l3jznkj	7	15	complex	complex	JJ
cord-325328-3l3jznkj	7	16	biological	biological	JJ
cord-325328-3l3jznkj	7	17	RNAs	rna	NNS
cord-325328-3l3jznkj	7	18	has	have	VBZ
cord-325328-3l3jznkj	7	19	accelerated	accelerate	VBN
cord-325328-3l3jznkj	7	20	,	,	,
cord-325328-3l3jznkj	7	21	with	with	IN
cord-325328-3l3jznkj	7	22	the	the	DT
cord-325328-3l3jznkj	7	23	analysis	analysis	NN
cord-325328-3l3jznkj	7	24	of	of	IN
cord-325328-3l3jznkj	7	25	three	three	CD
cord-325328-3l3jznkj	7	26	intact	intact	JJ
cord-325328-3l3jznkj	7	27	group	group	NN
cord-325328-3l3jznkj	7	28	I	-PRON-	PRP
cord-325328-3l3jznkj	7	29	introns	intron	NNS
cord-325328-3l3jznkj	7	30	,	,	,
cord-325328-3l3jznkj	7	31	A-	a-	NN
cord-325328-3l3jznkj	7	32	and	and	CC
cord-325328-3l3jznkj	7	33	B	b	NN
cord-325328-3l3jznkj	7	34	-	-	HYPH
cord-325328-3l3jznkj	7	35	type	type	NN
cord-325328-3l3jznkj	7	36	ribonuclease	ribonuclease	NN
cord-325328-3l3jznkj	7	37	P	p	NN
cord-325328-3l3jznkj	7	38	RNAs	rna	NNS
cord-325328-3l3jznkj	7	39	,	,	,
cord-325328-3l3jznkj	7	40	a	a	DT
cord-325328-3l3jznkj	7	41	riboswitch	riboswitch	NN
cord-325328-3l3jznkj	7	42	–	–	:
cord-325328-3l3jznkj	7	43	substrate	substrate	NN
cord-325328-3l3jznkj	7	44	complex	complex	NN
cord-325328-3l3jznkj	7	45	and	and	CC
cord-325328-3l3jznkj	7	46	other	other	JJ
cord-325328-3l3jznkj	7	47	structures	structure	NNS
cord-325328-3l3jznkj	7	48	.	.	.
cord-325328-3l3jznkj	8	1	The	the	DT
cord-325328-3l3jznkj	8	2	growing	grow	VBG
cord-325328-3l3jznkj	8	3	database	database	NN
cord-325328-3l3jznkj	8	4	of	of	IN
cord-325328-3l3jznkj	8	5	RNA	RNA	NNP
cord-325328-3l3jznkj	8	6	structures	structure	NNS
cord-325328-3l3jznkj	8	7	,	,	,
cord-325328-3l3jznkj	8	8	coupled	couple	VBN
cord-325328-3l3jznkj	8	9	with	with	IN
cord-325328-3l3jznkj	8	10	efforts	effort	NNS
cord-325328-3l3jznkj	8	11	directed	direct	VBN
cord-325328-3l3jznkj	8	12	at	at	IN
cord-325328-3l3jznkj	8	13	the	the	DT
cord-325328-3l3jznkj	8	14	standardization	standardization	NN
cord-325328-3l3jznkj	8	15	of	of	IN
cord-325328-3l3jznkj	8	16	nomenclature	nomenclature	NN
cord-325328-3l3jznkj	8	17	and	and	CC
cord-325328-3l3jznkj	8	18	classification	classification	NN
cord-325328-3l3jznkj	8	19	of	of	IN
cord-325328-3l3jznkj	8	20	motifs	motif	NNS
cord-325328-3l3jznkj	8	21	,	,	,
cord-325328-3l3jznkj	8	22	has	have	VBZ
cord-325328-3l3jznkj	8	23	resulted	result	VBN
cord-325328-3l3jznkj	8	24	in	in	IN
cord-325328-3l3jznkj	8	25	the	the	DT
cord-325328-3l3jznkj	8	26	identification	identification	NN
cord-325328-3l3jznkj	8	27	and	and	CC
cord-325328-3l3jznkj	8	28	characterization	characterization	NN
cord-325328-3l3jznkj	8	29	of	of	IN
cord-325328-3l3jznkj	8	30	numerous	numerous	JJ
cord-325328-3l3jznkj	8	31	RNA	RNA	NNP
cord-325328-3l3jznkj	8	32	secondary	secondary	JJ
cord-325328-3l3jznkj	8	33	and	and	CC
cord-325328-3l3jznkj	8	34	tertiary	tertiary	JJ
cord-325328-3l3jznkj	8	35	structure	structure	NN
cord-325328-3l3jznkj	8	36	motifs	motif	NNS
cord-325328-3l3jznkj	8	37	.	.	.
cord-325328-3l3jznkj	9	1	Because	because	IN
cord-325328-3l3jznkj	9	2	a	a	DT
cord-325328-3l3jznkj	9	3	large	large	JJ
cord-325328-3l3jznkj	9	4	proportion	proportion	NN
cord-325328-3l3jznkj	9	5	of	of	IN
cord-325328-3l3jznkj	9	6	RNA	RNA	NNP
cord-325328-3l3jznkj	9	7	structure	structure	NN
cord-325328-3l3jznkj	9	8	can	can	MD
cord-325328-3l3jznkj	9	9	now	now	RB
cord-325328-3l3jznkj	9	10	be	be	VB
cord-325328-3l3jznkj	9	11	shown	show	VBN
cord-325328-3l3jznkj	9	12	to	to	TO
cord-325328-3l3jznkj	9	13	be	be	VB
cord-325328-3l3jznkj	9	14	composed	compose	VBN
cord-325328-3l3jznkj	9	15	of	of	IN
cord-325328-3l3jznkj	9	16	these	these	DT
cord-325328-3l3jznkj	9	17	recurring	recur	VBG
cord-325328-3l3jznkj	9	18	structural	structural	JJ
cord-325328-3l3jznkj	9	19	motifs	motif	NNS
cord-325328-3l3jznkj	9	20	,	,	,
cord-325328-3l3jznkj	9	21	a	a	DT
cord-325328-3l3jznkj	9	22	view	view	NN
cord-325328-3l3jznkj	9	23	of	of	IN
cord-325328-3l3jznkj	9	24	RNA	RNA	NNP
cord-325328-3l3jznkj	9	25	as	as	IN
cord-325328-3l3jznkj	9	26	a	a	DT
cord-325328-3l3jznkj	9	27	modular	modular	JJ
cord-325328-3l3jznkj	9	28	structure	structure	NN
cord-325328-3l3jznkj	9	29	built	build	VBN
cord-325328-3l3jznkj	9	30	from	from	IN
cord-325328-3l3jznkj	9	31	a	a	DT
cord-325328-3l3jznkj	9	32	combination	combination	NN
cord-325328-3l3jznkj	9	33	of	of	IN
cord-325328-3l3jznkj	9	34	these	these	DT
cord-325328-3l3jznkj	9	35	building	building	NN
cord-325328-3l3jznkj	9	36	blocks	block	NNS
cord-325328-3l3jznkj	9	37	and	and	CC
cord-325328-3l3jznkj	9	38	tertiary	tertiary	JJ
cord-325328-3l3jznkj	9	39	linkers	linker	NNS
cord-325328-3l3jznkj	9	40	is	be	VBZ
cord-325328-3l3jznkj	9	41	beginning	begin	VBG
cord-325328-3l3jznkj	9	42	to	to	TO
cord-325328-3l3jznkj	9	43	emerge	emerge	VB
cord-325328-3l3jznkj	9	44	.	.	.
cord-325328-3l3jznkj	10	1	At	at	IN
cord-325328-3l3jznkj	10	2	the	the	DT
cord-325328-3l3jznkj	10	3	same	same	JJ
cord-325328-3l3jznkj	10	4	time	time	NN
cord-325328-3l3jznkj	10	5	,	,	,
cord-325328-3l3jznkj	10	6	however	however	RB
cord-325328-3l3jznkj	10	7	,	,	,
cord-325328-3l3jznkj	10	8	more	more	RBR
cord-325328-3l3jznkj	10	9	detailed	detailed	JJ
cord-325328-3l3jznkj	10	10	analysis	analysis	NN
cord-325328-3l3jznkj	10	11	of	of	IN
cord-325328-3l3jznkj	10	12	water	water	NN
cord-325328-3l3jznkj	10	13	,	,	,
cord-325328-3l3jznkj	10	14	metal	metal	NN
cord-325328-3l3jznkj	10	15	,	,	,
cord-325328-3l3jznkj	10	16	ligand	ligand	NN
cord-325328-3l3jznkj	10	17	and	and	CC
cord-325328-3l3jznkj	10	18	protein	protein	NN
cord-325328-3l3jznkj	10	19	binding	bind	VBG
cord-325328-3l3jznkj	10	20	to	to	IN
cord-325328-3l3jznkj	10	21	RNA	RNA	NNP
cord-325328-3l3jznkj	10	22	is	be	VBZ
cord-325328-3l3jznkj	10	23	revealing	reveal	VBG
cord-325328-3l3jznkj	10	24	the	the	DT
cord-325328-3l3jznkj	10	25	effect	effect	NN
cord-325328-3l3jznkj	10	26	of	of	IN
cord-325328-3l3jznkj	10	27	these	these	DT
cord-325328-3l3jznkj	10	28	moieties	moiety	NNS
cord-325328-3l3jznkj	10	29	on	on	IN
cord-325328-3l3jznkj	10	30	folding	folding	NN
cord-325328-3l3jznkj	10	31	and	and	CC
cord-325328-3l3jznkj	10	32	structure	structure	NN
cord-325328-3l3jznkj	10	33	formation	formation	NN
cord-325328-3l3jznkj	10	34	.	.	.
cord-325328-3l3jznkj	11	1	The	the	DT
cord-325328-3l3jznkj	11	2	balance	balance	NN
cord-325328-3l3jznkj	11	3	between	between	IN
cord-325328-3l3jznkj	11	4	the	the	DT
cord-325328-3l3jznkj	11	5	views	view	NNS
cord-325328-3l3jznkj	11	6	of	of	IN
cord-325328-3l3jznkj	11	7	RNA	RNA	NNP
cord-325328-3l3jznkj	11	8	structure	structure	NN
cord-325328-3l3jznkj	11	9	either	either	CC
cord-325328-3l3jznkj	11	10	as	as	IN
cord-325328-3l3jznkj	11	11	strictly	strictly	RB
cord-325328-3l3jznkj	11	12	a	a	DT
cord-325328-3l3jznkj	11	13	construct	construct	NN
cord-325328-3l3jznkj	11	14	of	of	IN
cord-325328-3l3jznkj	11	15	preformed	preformed	JJ
cord-325328-3l3jznkj	11	16	building	building	NN
cord-325328-3l3jznkj	11	17	blocks	block	NNS
cord-325328-3l3jznkj	11	18	linked	link	VBN
cord-325328-3l3jznkj	11	19	in	in	IN
cord-325328-3l3jznkj	11	20	a	a	DT
cord-325328-3l3jznkj	11	21	limited	limited	JJ
cord-325328-3l3jznkj	11	22	number	number	NN
cord-325328-3l3jznkj	11	23	of	of	IN
cord-325328-3l3jznkj	11	24	ways	way	NNS
cord-325328-3l3jznkj	11	25	or	or	CC
cord-325328-3l3jznkj	11	26	as	as	IN
cord-325328-3l3jznkj	11	27	a	a	DT
cord-325328-3l3jznkj	11	28	flexible	flexible	JJ
cord-325328-3l3jznkj	11	29	polymer	polymer	NN
cord-325328-3l3jznkj	11	30	assuming	assume	VBG
cord-325328-3l3jznkj	11	31	a	a	DT
cord-325328-3l3jznkj	11	32	global	global	JJ
cord-325328-3l3jznkj	11	33	fold	fold	NN
cord-325328-3l3jznkj	11	34	influenced	influence	VBN
cord-325328-3l3jznkj	11	35	by	by	IN
cord-325328-3l3jznkj	11	36	its	-PRON-	PRP$
cord-325328-3l3jznkj	11	37	environment	environment	NN
cord-325328-3l3jznkj	11	38	will	will	MD
cord-325328-3l3jznkj	11	39	be	be	VB
cord-325328-3l3jznkj	11	40	the	the	DT
cord-325328-3l3jznkj	11	41	focus	focus	NN
cord-325328-3l3jznkj	11	42	of	of	IN
cord-325328-3l3jznkj	11	43	current	current	JJ
cord-325328-3l3jznkj	11	44	and	and	CC
cord-325328-3l3jznkj	11	45	future	future	JJ
cord-325328-3l3jznkj	11	46	RNA	RNA	NNP
cord-325328-3l3jznkj	11	47	structural	structural	JJ
cord-325328-3l3jznkj	11	48	biology	biology	NN
cord-325328-3l3jznkj	11	49	.	.	.
cord-325328-3l3jznkj	12	1	Stephen	Stephen	NNP
cord-325328-3l3jznkj	12	2	R	R	NNP
cord-325328-3l3jznkj	12	3	Holbrook	Holbrook	NNP
cord-325328-3l3jznkj	13	1	The	the	DT
cord-325328-3l3jznkj	13	2	database	database	NN
cord-325328-3l3jznkj	13	3	of	of	IN
cord-325328-3l3jznkj	13	4	RNA	RNA	NNP
cord-325328-3l3jznkj	13	5	structure	structure	NN
cord-325328-3l3jznkj	13	6	has	have	VBZ
cord-325328-3l3jznkj	13	7	grown	grow	VBN
cord-325328-3l3jznkj	13	8	tremendously	tremendously	RB
cord-325328-3l3jznkj	13	9	since	since	IN
cord-325328-3l3jznkj	13	10	the	the	DT
cord-325328-3l3jznkj	13	11	crystal	crystal	NN
cord-325328-3l3jznkj	13	12	structure	structure	NN
cord-325328-3l3jznkj	13	13	analyses	analysis	NNS
cord-325328-3l3jznkj	13	14	of	of	IN
cord-325328-3l3jznkj	13	15	ribosomal	ribosomal	JJ
cord-325328-3l3jznkj	13	16	subunits	subunit	NNS
cord-325328-3l3jznkj	13	17	in	in	IN
cord-325328-3l3jznkj	13	18	[	[	-LRB-
cord-325328-3l3jznkj	13	19	2000	2000	CD
cord-325328-3l3jznkj	13	20	]	]	-RRB-
cord-325328-3l3jznkj	13	21	[	[	-LRB-
cord-325328-3l3jznkj	13	22	2001	2001	CD
cord-325328-3l3jznkj	13	23	]	]	-RRB-
cord-325328-3l3jznkj	13	24	.	.	.
cord-325328-3l3jznkj	14	1	During	during	IN
cord-325328-3l3jznkj	14	2	the	the	DT
cord-325328-3l3jznkj	14	3	past	past	JJ
cord-325328-3l3jznkj	14	4	year	year	NN
cord-325328-3l3jznkj	14	5	,	,	,
cord-325328-3l3jznkj	14	6	the	the	DT
cord-325328-3l3jznkj	14	7	trend	trend	NN
cord-325328-3l3jznkj	14	8	toward	toward	IN
cord-325328-3l3jznkj	14	9	determining	determine	VBG
cord-325328-3l3jznkj	14	10	the	the	DT
cord-325328-3l3jznkj	14	11	structure	structure	NN
cord-325328-3l3jznkj	14	12	of	of	IN
cord-325328-3l3jznkj	14	13	large	large	JJ
cord-325328-3l3jznkj	14	14	,	,	,
cord-325328-3l3jznkj	14	15	complex	complex	JJ
cord-325328-3l3jznkj	14	16	biological	biological	JJ
cord-325328-3l3jznkj	14	17	RNAs	rna	NNS
cord-325328-3l3jznkj	14	18	has	have	VBZ
cord-325328-3l3jznkj	14	19	accelerated	accelerate	VBN
cord-325328-3l3jznkj	14	20	,	,	,
cord-325328-3l3jznkj	14	21	with	with	IN
cord-325328-3l3jznkj	14	22	the	the	DT
cord-325328-3l3jznkj	14	23	analysis	analysis	NN
cord-325328-3l3jznkj	14	24	of	of	IN
cord-325328-3l3jznkj	14	25	three	three	CD
cord-325328-3l3jznkj	14	26	intact	intact	JJ
cord-325328-3l3jznkj	14	27	group	group	NN
cord-325328-3l3jznkj	14	28	I	-PRON-	PRP
cord-325328-3l3jznkj	14	29	introns	intron	NNS
cord-325328-3l3jznkj	14	30	,	,	,
cord-325328-3l3jznkj	14	31	A	A	NNP
cord-325328-3l3jznkj	14	32	-	-	,
cord-325328-3l3jznkj	14	33	and	and	CC
cord-325328-3l3jznkj	14	34	B	b	NN
cord-325328-3l3jznkj	14	35	-	-	HYPH
cord-325328-3l3jznkj	14	36	type	type	NN
cord-325328-3l3jznkj	14	37	ribonuclease	ribonuclease	NN
cord-325328-3l3jznkj	14	38	P	p	NN
cord-325328-3l3jznkj	14	39	RNAs	rna	NNS
cord-325328-3l3jznkj	14	40	,	,	,
cord-325328-3l3jznkj	14	41	a	a	DT
cord-325328-3l3jznkj	14	42	riboswitch	riboswitch	NN
cord-325328-3l3jznkj	14	43	-	-	HYPH
cord-325328-3l3jznkj	14	44	substrate	substrate	NN
cord-325328-3l3jznkj	14	45	complex	complex	NN
cord-325328-3l3jznkj	14	46	and	and	CC
cord-325328-3l3jznkj	14	47	other	other	JJ
cord-325328-3l3jznkj	14	48	structures	structure	NNS
cord-325328-3l3jznkj	14	49	.	.	.
cord-325328-3l3jznkj	15	1	The	the	DT
cord-325328-3l3jznkj	15	2	growing	grow	VBG
cord-325328-3l3jznkj	15	3	database	database	NN
cord-325328-3l3jznkj	15	4	of	of	IN
cord-325328-3l3jznkj	15	5	RNA	RNA	NNP
cord-325328-3l3jznkj	15	6	structures	structure	NNS
cord-325328-3l3jznkj	15	7	,	,	,
cord-325328-3l3jznkj	15	8	coupled	couple	VBN
cord-325328-3l3jznkj	15	9	with	with	IN
cord-325328-3l3jznkj	15	10	efforts	effort	NNS
cord-325328-3l3jznkj	15	11	directed	direct	VBN
cord-325328-3l3jznkj	15	12	at	at	IN
cord-325328-3l3jznkj	15	13	the	the	DT
cord-325328-3l3jznkj	15	14	standardization	standardization	NN
cord-325328-3l3jznkj	15	15	of	of	IN
cord-325328-3l3jznkj	15	16	nomenclature	nomenclature	NN
cord-325328-3l3jznkj	15	17	and	and	CC
cord-325328-3l3jznkj	15	18	classification	classification	NN
cord-325328-3l3jznkj	15	19	of	of	IN
cord-325328-3l3jznkj	15	20	motifs	motif	NNS
cord-325328-3l3jznkj	15	21	,	,	,
cord-325328-3l3jznkj	15	22	has	have	VBZ
cord-325328-3l3jznkj	15	23	resulted	result	VBN
cord-325328-3l3jznkj	15	24	in	in	IN
cord-325328-3l3jznkj	15	25	the	the	DT
cord-325328-3l3jznkj	15	26	identification	identification	NN
cord-325328-3l3jznkj	15	27	and	and	CC
cord-325328-3l3jznkj	15	28	characterization	characterization	NN
cord-325328-3l3jznkj	15	29	of	of	IN
cord-325328-3l3jznkj	15	30	numerous	numerous	JJ
cord-325328-3l3jznkj	15	31	RNA	RNA	NNP
cord-325328-3l3jznkj	15	32	secondary	secondary	JJ
cord-325328-3l3jznkj	15	33	and	and	CC
cord-325328-3l3jznkj	15	34	tertiary	tertiary	JJ
cord-325328-3l3jznkj	15	35	structure	structure	NN
cord-325328-3l3jznkj	15	36	motifs	motif	NNS
cord-325328-3l3jznkj	15	37	.	.	.
cord-325328-3l3jznkj	16	1	Because	because	IN
cord-325328-3l3jznkj	16	2	a	a	DT
cord-325328-3l3jznkj	16	3	large	large	JJ
cord-325328-3l3jznkj	16	4	proportion	proportion	NN
cord-325328-3l3jznkj	16	5	of	of	IN
cord-325328-3l3jznkj	16	6	RNA	RNA	NNP
cord-325328-3l3jznkj	16	7	structure	structure	NN
cord-325328-3l3jznkj	16	8	can	can	MD
cord-325328-3l3jznkj	16	9	now	now	RB
cord-325328-3l3jznkj	16	10	be	be	VB
cord-325328-3l3jznkj	16	11	shown	show	VBN
cord-325328-3l3jznkj	16	12	to	to	TO
cord-325328-3l3jznkj	16	13	be	be	VB
cord-325328-3l3jznkj	16	14	composed	compose	VBN
cord-325328-3l3jznkj	16	15	of	of	IN
cord-325328-3l3jznkj	16	16	these	these	DT
cord-325328-3l3jznkj	16	17	recurring	recur	VBG
cord-325328-3l3jznkj	16	18	structural	structural	JJ
cord-325328-3l3jznkj	16	19	motifs	motif	NNS
cord-325328-3l3jznkj	16	20	,	,	,
cord-325328-3l3jznkj	16	21	a	a	DT
cord-325328-3l3jznkj	16	22	view	view	NN
cord-325328-3l3jznkj	16	23	of	of	IN
cord-325328-3l3jznkj	16	24	RNA	RNA	NNP
cord-325328-3l3jznkj	16	25	as	as	IN
cord-325328-3l3jznkj	16	26	a	a	DT
cord-325328-3l3jznkj	16	27	modular	modular	JJ
cord-325328-3l3jznkj	16	28	structure	structure	NN
cord-325328-3l3jznkj	16	29	built	build	VBN
cord-325328-3l3jznkj	16	30	from	from	IN
cord-325328-3l3jznkj	16	31	a	a	DT
cord-325328-3l3jznkj	16	32	combination	combination	NN
cord-325328-3l3jznkj	16	33	of	of	IN
cord-325328-3l3jznkj	16	34	these	these	DT
cord-325328-3l3jznkj	16	35	building	building	NN
cord-325328-3l3jznkj	16	36	blocks	block	NNS
cord-325328-3l3jznkj	16	37	and	and	CC
cord-325328-3l3jznkj	16	38	tertiary	tertiary	JJ
cord-325328-3l3jznkj	16	39	linkers	linker	NNS
cord-325328-3l3jznkj	16	40	is	be	VBZ
cord-325328-3l3jznkj	16	41	beginning	begin	VBG
cord-325328-3l3jznkj	16	42	to	to	TO
cord-325328-3l3jznkj	16	43	emerge	emerge	VB
cord-325328-3l3jznkj	16	44	.	.	.
cord-325328-3l3jznkj	17	1	At	at	IN
cord-325328-3l3jznkj	17	2	the	the	DT
cord-325328-3l3jznkj	17	3	same	same	JJ
cord-325328-3l3jznkj	17	4	time	time	NN
cord-325328-3l3jznkj	17	5	,	,	,
cord-325328-3l3jznkj	17	6	however	however	RB
cord-325328-3l3jznkj	17	7	,	,	,
cord-325328-3l3jznkj	17	8	more	more	RBR
cord-325328-3l3jznkj	17	9	detailed	detailed	JJ
cord-325328-3l3jznkj	17	10	analysis	analysis	NN
cord-325328-3l3jznkj	17	11	of	of	IN
cord-325328-3l3jznkj	17	12	water	water	NN
cord-325328-3l3jznkj	17	13	,	,	,
cord-325328-3l3jznkj	17	14	metal	metal	NN
cord-325328-3l3jznkj	17	15	,	,	,
cord-325328-3l3jznkj	17	16	ligand	ligand	NN
cord-325328-3l3jznkj	17	17	and	and	CC
cord-325328-3l3jznkj	17	18	protein	protein	NN
cord-325328-3l3jznkj	17	19	binding	bind	VBG
cord-325328-3l3jznkj	17	20	to	to	IN
cord-325328-3l3jznkj	17	21	RNA	RNA	NNP
cord-325328-3l3jznkj	17	22	is	be	VBZ
cord-325328-3l3jznkj	17	23	revealing	reveal	VBG
cord-325328-3l3jznkj	17	24	the	the	DT
cord-325328-3l3jznkj	17	25	effect	effect	NN
cord-325328-3l3jznkj	17	26	of	of	IN
cord-325328-3l3jznkj	17	27	these	these	DT
cord-325328-3l3jznkj	17	28	moieties	moiety	NNS
cord-325328-3l3jznkj	17	29	on	on	IN
cord-325328-3l3jznkj	17	30	folding	folding	NN
cord-325328-3l3jznkj	17	31	and	and	CC
cord-325328-3l3jznkj	17	32	structure	structure	NN
cord-325328-3l3jznkj	17	33	formation	formation	NN
cord-325328-3l3jznkj	17	34	.	.	.
cord-325328-3l3jznkj	18	1	The	the	DT
cord-325328-3l3jznkj	18	2	balance	balance	NN
cord-325328-3l3jznkj	18	3	between	between	IN
cord-325328-3l3jznkj	18	4	the	the	DT
cord-325328-3l3jznkj	18	5	views	view	NNS
cord-325328-3l3jznkj	18	6	of	of	IN
cord-325328-3l3jznkj	18	7	RNA	RNA	NNP
cord-325328-3l3jznkj	18	8	structure	structure	NN
cord-325328-3l3jznkj	18	9	either	either	CC
cord-325328-3l3jznkj	18	10	as	as	IN
cord-325328-3l3jznkj	18	11	strictly	strictly	RB
cord-325328-3l3jznkj	18	12	a	a	DT
cord-325328-3l3jznkj	18	13	construct	construct	NN
cord-325328-3l3jznkj	18	14	of	of	IN
cord-325328-3l3jznkj	18	15	preformed	preformed	JJ
cord-325328-3l3jznkj	18	16	building	building	NN
cord-325328-3l3jznkj	18	17	blocks	block	NNS
cord-325328-3l3jznkj	18	18	linked	link	VBN
cord-325328-3l3jznkj	18	19	in	in	IN
cord-325328-3l3jznkj	18	20	a	a	DT
cord-325328-3l3jznkj	18	21	limited	limited	JJ
cord-325328-3l3jznkj	18	22	number	number	NN
cord-325328-3l3jznkj	18	23	of	of	IN
cord-325328-3l3jznkj	18	24	ways	way	NNS
cord-325328-3l3jznkj	18	25	or	or	CC
cord-325328-3l3jznkj	18	26	as	as	IN
cord-325328-3l3jznkj	18	27	a	a	DT
cord-325328-3l3jznkj	18	28	flexible	flexible	JJ
cord-325328-3l3jznkj	18	29	polymer	polymer	NN
cord-325328-3l3jznkj	18	30	assuming	assume	VBG
cord-325328-3l3jznkj	18	31	a	a	DT
cord-325328-3l3jznkj	18	32	global	global	JJ
cord-325328-3l3jznkj	18	33	fold	fold	NN
cord-325328-3l3jznkj	18	34	influenced	influence	VBN
cord-325328-3l3jznkj	18	35	by	by	IN
cord-325328-3l3jznkj	18	36	its	-PRON-	PRP$
cord-325328-3l3jznkj	18	37	environment	environment	NN
cord-325328-3l3jznkj	18	38	will	will	MD
cord-325328-3l3jznkj	18	39	be	be	VB
cord-325328-3l3jznkj	18	40	the	the	DT
cord-325328-3l3jznkj	18	41	focus	focus	NN
cord-325328-3l3jznkj	18	42	of	of	IN
cord-325328-3l3jznkj	18	43	current	current	JJ
cord-325328-3l3jznkj	18	44	and	and	CC
cord-325328-3l3jznkj	18	45	future	future	JJ
cord-325328-3l3jznkj	18	46	RNA	RNA	NNP
cord-325328-3l3jznkj	18	47	structural	structural	JJ
cord-325328-3l3jznkj	18	48	biology	biology	NN
cord-325328-3l3jznkj	18	49	.	.	.
cord-325328-3l3jznkj	19	1	Recent	recent	JJ
cord-325328-3l3jznkj	19	2	trends	trend	NNS
cord-325328-3l3jznkj	19	3	in	in	IN
cord-325328-3l3jznkj	19	4	RNA	RNA	NNP
cord-325328-3l3jznkj	19	5	structure	structure	NN
cord-325328-3l3jznkj	19	6	determination	determination	NN
cord-325328-3l3jznkj	19	7	and	and	CC
cord-325328-3l3jznkj	19	8	analysis	analysis	NN
cord-325328-3l3jznkj	19	9	have	have	VBP
cord-325328-3l3jznkj	19	10	accelerated	accelerate	VBN
cord-325328-3l3jznkj	19	11	in	in	IN
cord-325328-3l3jznkj	19	12	two	two	CD
cord-325328-3l3jznkj	19	13	seemingly	seemingly	RB
cord-325328-3l3jznkj	19	14	disparate	disparate	JJ
cord-325328-3l3jznkj	19	15	directions	direction	NNS
cord-325328-3l3jznkj	19	16	:	:	:
cord-325328-3l3jznkj	19	17	the	the	DT
cord-325328-3l3jznkj	19	18	determination	determination	NN
cord-325328-3l3jznkj	19	19	of	of	IN
cord-325328-3l3jznkj	19	20	larger	large	JJR
cord-325328-3l3jznkj	19	21	,	,	,
cord-325328-3l3jznkj	19	22	more	more	RBR
cord-325328-3l3jznkj	19	23	biologically	biologically	RB
cord-325328-3l3jznkj	19	24	relevant	relevant	JJ
cord-325328-3l3jznkj	19	25	RNA	RNA	NNP
cord-325328-3l3jznkj	19	26	structures	structure	NNS
cord-325328-3l3jznkj	19	27	by	by	IN
cord-325328-3l3jznkj	19	28	both	both	CC
cord-325328-3l3jznkj	19	29	X	x	NN
cord-325328-3l3jznkj	19	30	-	-	NN
cord-325328-3l3jznkj	19	31	ray	ray	NN
cord-325328-3l3jznkj	19	32	crystallography	crystallography	NN
cord-325328-3l3jznkj	19	33	and	and	CC
cord-325328-3l3jznkj	19	34	NMR	NMR	NNP
cord-325328-3l3jznkj	19	35	methods	method	NNS
cord-325328-3l3jznkj	19	36	;	;	:
cord-325328-3l3jznkj	19	37	and	and	CC
cord-325328-3l3jznkj	19	38	the	the	DT
cord-325328-3l3jznkj	19	39	identification	identification	NN
cord-325328-3l3jznkj	19	40	,	,	,
cord-325328-3l3jznkj	19	41	classification	classification	NN
cord-325328-3l3jznkj	19	42	and	and	CC
cord-325328-3l3jznkj	19	43	characterization	characterization	NN
cord-325328-3l3jznkj	19	44	of	of	IN
cord-325328-3l3jznkj	19	45	the	the	DT
cord-325328-3l3jznkj	19	46	small	small	JJ
cord-325328-3l3jznkj	19	47	,	,	,
cord-325328-3l3jznkj	19	48	ubiquitous	ubiquitous	JJ
cord-325328-3l3jznkj	19	49	structural	structural	JJ
cord-325328-3l3jznkj	19	50	motifs	motif	NNS
cord-325328-3l3jznkj	19	51	found	find	VBN
cord-325328-3l3jznkj	19	52	in	in	IN
cord-325328-3l3jznkj	19	53	these	these	DT
cord-325328-3l3jznkj	19	54	RNA	RNA	NNP
cord-325328-3l3jznkj	19	55	structures	structure	NNS
cord-325328-3l3jznkj	19	56	.	.	.
cord-325328-3l3jznkj	20	1	Surprisingly	surprisingly	RB
cord-325328-3l3jznkj	20	2	,	,	,
cord-325328-3l3jznkj	20	3	these	these	DT
cord-325328-3l3jznkj	20	4	two	two	CD
cord-325328-3l3jznkj	20	5	directions	direction	NNS
cord-325328-3l3jznkj	20	6	are	be	VBP
cord-325328-3l3jznkj	20	7	related	relate	VBN
cord-325328-3l3jznkj	20	8	and	and	CC
cord-325328-3l3jznkj	20	9	are	be	VBP
cord-325328-3l3jznkj	20	10	mutually	mutually	RB
cord-325328-3l3jznkj	20	11	reinfor	reinfor	JJ
cord-325328-3l3jznkj	20	12	-	-	HYPH
cord-325328-3l3jznkj	20	13	cing	ce	VBG
cord-325328-3l3jznkj	20	14	the	the	DT
cord-325328-3l3jznkj	20	15	advancement	advancement	NN
cord-325328-3l3jznkj	20	16	of	of	IN
cord-325328-3l3jznkj	20	17	the	the	DT
cord-325328-3l3jznkj	20	18	field	field	NN
cord-325328-3l3jznkj	20	19	of	of	IN
cord-325328-3l3jznkj	20	20	RNA	RNA	NNP
cord-325328-3l3jznkj	20	21	structural	structural	JJ
cord-325328-3l3jznkj	20	22	biology	biology	NN
cord-325328-3l3jznkj	20	23	.	.	.
cord-325328-3l3jznkj	21	1	Continuing	continue	VBG
cord-325328-3l3jznkj	21	2	improvements	improvement	NNS
cord-325328-3l3jznkj	21	3	in	in	IN
cord-325328-3l3jznkj	21	4	methods	method	NNS
cord-325328-3l3jznkj	21	5	for	for	IN
cord-325328-3l3jznkj	21	6	the	the	DT
cord-325328-3l3jznkj	21	7	synthesis	synthesis	NN
cord-325328-3l3jznkj	21	8	,	,	,
cord-325328-3l3jznkj	21	9	purification	purification	NN
cord-325328-3l3jznkj	21	10	,	,	,
cord-325328-3l3jznkj	21	11	crystallization	crystallization	NN
cord-325328-3l3jznkj	21	12	and	and	CC
cord-325328-3l3jznkj	21	13	derivatization	derivatization	NN
cord-325328-3l3jznkj	21	14	of	of	IN
cord-325328-3l3jznkj	21	15	large	large	JJ
cord-325328-3l3jznkj	21	16	RNA	RNA	NNP
cord-325328-3l3jznkj	21	17	molecules	molecule	NNS
cord-325328-3l3jznkj	21	18	,	,	,
cord-325328-3l3jznkj	21	19	together	together	RB
cord-325328-3l3jznkj	21	20	with	with	IN
cord-325328-3l3jznkj	21	21	technical	technical	JJ
cord-325328-3l3jznkj	21	22	advances	advance	NNS
cord-325328-3l3jznkj	21	23	at	at	IN
cord-325328-3l3jznkj	21	24	and	and	CC
cord-325328-3l3jznkj	21	25	increased	increase	VBN
cord-325328-3l3jznkj	21	26	availability	availability	NN
cord-325328-3l3jznkj	21	27	of	of	IN
cord-325328-3l3jznkj	21	28	synchrotron	synchrotron	NN
cord-325328-3l3jznkj	21	29	X	x	NN
cord-325328-3l3jznkj	21	30	-	-	NN
cord-325328-3l3jznkj	21	31	ray	ray	NN
cord-325328-3l3jznkj	21	32	beamlines	beamline	NNS
cord-325328-3l3jznkj	21	33	,	,	,
cord-325328-3l3jznkj	21	34	and	and	CC
cord-325328-3l3jznkj	21	35	the	the	DT
cord-325328-3l3jznkj	21	36	development	development	NN
cord-325328-3l3jznkj	21	37	of	of	IN
cord-325328-3l3jznkj	21	38	advanced	advanced	JJ
cord-325328-3l3jznkj	21	39	structure	structure	NN
cord-325328-3l3jznkj	21	40	solution	solution	NN
cord-325328-3l3jznkj	21	41	software	software	NN
cord-325328-3l3jznkj	21	42	,	,	,
cord-325328-3l3jznkj	21	43	are	be	VBP
cord-325328-3l3jznkj	21	44	allowing	allow	VBG
cord-325328-3l3jznkj	21	45	more	more	JJR
cord-325328-3l3jznkj	21	46	and	and	CC
cord-325328-3l3jznkj	21	47	larger	large	JJR
cord-325328-3l3jznkj	21	48	RNA	RNA	NNP
cord-325328-3l3jznkj	21	49	structures	structure	NNS
cord-325328-3l3jznkj	21	50	to	to	TO
cord-325328-3l3jznkj	21	51	be	be	VB
cord-325328-3l3jznkj	21	52	determined	determine	VBN
cord-325328-3l3jznkj	21	53	[	[	-LRB-
cord-325328-3l3jznkj	21	54	1	1	CD
cord-325328-3l3jznkj	21	55	]	]	-RRB-
cord-325328-3l3jznkj	21	56	.	.	.
cord-325328-3l3jznkj	22	1	The	the	DT
cord-325328-3l3jznkj	22	2	parallel	parallel	JJ
cord-325328-3l3jznkj	22	3	development	development	NN
cord-325328-3l3jznkj	22	4	of	of	IN
cord-325328-3l3jznkj	22	5	high	high	JJ
cord-325328-3l3jznkj	22	6	-	-	HYPH
cord-325328-3l3jznkj	22	7	resolution	resolution	NN
cord-325328-3l3jznkj	22	8	NMR	NMR	NNP
cord-325328-3l3jznkj	22	9	methods	method	NNS
cord-325328-3l3jznkj	22	10	has	have	VBZ
cord-325328-3l3jznkj	22	11	increased	increase	VBN
cord-325328-3l3jznkj	22	12	the	the	DT
cord-325328-3l3jznkj	22	13	feasible	feasible	JJ
cord-325328-3l3jznkj	22	14	size	size	NN
cord-325328-3l3jznkj	22	15	of	of	IN
cord-325328-3l3jznkj	22	16	RNA	RNA	NNP
cord-325328-3l3jznkj	22	17	structures	structure	NNS
cord-325328-3l3jznkj	22	18	that	that	WDT
cord-325328-3l3jznkj	22	19	can	can	MD
cord-325328-3l3jznkj	22	20	be	be	VB
cord-325328-3l3jznkj	22	21	determined	determine	VBN
cord-325328-3l3jznkj	22	22	,	,	,
cord-325328-3l3jznkj	22	23	as	as	IN
cord-325328-3l3jznkj	22	24	evidenced	evidence	VBN
cord-325328-3l3jznkj	22	25	by	by	IN
cord-325328-3l3jznkj	22	26	the	the	DT
cord-325328-3l3jznkj	22	27	structure	structure	NN
cord-325328-3l3jznkj	22	28	of	of	IN
cord-325328-3l3jznkj	22	29	the	the	DT
cord-325328-3l3jznkj	22	30	101-nucleotide	101-nucleotide	CD
cord-325328-3l3jznkj	22	31	RNA	RNA	NNP
cord-325328-3l3jznkj	22	32	responsible	responsible	JJ
cord-325328-3l3jznkj	22	33	for	for	IN
cord-325328-3l3jznkj	22	34	signaling	signal	VBG
cord-325328-3l3jznkj	22	35	core	core	NN
cord-325328-3l3jznkj	22	36	encapsidation	encapsidation	NN
cord-325328-3l3jznkj	22	37	in	in	IN
cord-325328-3l3jznkj	22	38	Moloney	Moloney	NNP
cord-325328-3l3jznkj	22	39	murine	murine	JJ
cord-325328-3l3jznkj	22	40	leukemia	leukemia	NN
cord-325328-3l3jznkj	22	41	virus	virus	NN
cord-325328-3l3jznkj	22	42	(	(	-LRB-
cord-325328-3l3jznkj	22	43	MMLV	MMLV	NNP
cord-325328-3l3jznkj	22	44	)	)	-RRB-
cord-325328-3l3jznkj	22	45	[	[	-LRB-
cord-325328-3l3jznkj	22	46	2	2	CD
cord-325328-3l3jznkj	22	47	]	]	-RRB-
cord-325328-3l3jznkj	22	48	.	.	.
cord-325328-3l3jznkj	23	1	Figure	figure	NN
cord-325328-3l3jznkj	23	2	1	1	CD
cord-325328-3l3jznkj	23	3	shows	show	VBZ
cord-325328-3l3jznkj	23	4	the	the	DT
cord-325328-3l3jznkj	23	5	average	average	JJ
cord-325328-3l3jznkj	23	6	size	size	NN
cord-325328-3l3jznkj	23	7	of	of	IN
cord-325328-3l3jznkj	23	8	RNA	RNA	NNP
cord-325328-3l3jznkj	23	9	structures	structure	NNS
cord-325328-3l3jznkj	23	10	determined	determine	VBN
cord-325328-3l3jznkj	23	11	by	by	IN
cord-325328-3l3jznkj	23	12	year	year	NN
cord-325328-3l3jznkj	23	13	,	,	,
cord-325328-3l3jznkj	23	14	as	as	IN
cord-325328-3l3jznkj	23	15	catalogued	catalogue	VBN
cord-325328-3l3jznkj	23	16	in	in	IN
cord-325328-3l3jznkj	23	17	the	the	DT
cord-325328-3l3jznkj	23	18	Nucleic	Nucleic	NNP
cord-325328-3l3jznkj	23	19	Acid	acid	NN
cord-325328-3l3jznkj	23	20	Database	database	NN
cord-325328-3l3jznkj	23	21	(	(	-LRB-
cord-325328-3l3jznkj	23	22	NDB	ndb	NN
cord-325328-3l3jznkj	23	23	)	)	-RRB-
cord-325328-3l3jznkj	24	1	[	[	-LRB-
cord-325328-3l3jznkj	24	2	3	3	CD
cord-325328-3l3jznkj	24	3	]	]	-RRB-
cord-325328-3l3jznkj	24	4	.	.	.
cord-325328-3l3jznkj	25	1	The	the	DT
cord-325328-3l3jznkj	25	2	solution	solution	NN
cord-325328-3l3jznkj	25	3	of	of	IN
cord-325328-3l3jznkj	25	4	the	the	DT
cord-325328-3l3jznkj	25	5	first	first	JJ
cord-325328-3l3jznkj	25	6	ribosomal	ribosomal	JJ
cord-325328-3l3jznkj	25	7	subunit	subunit	NN
cord-325328-3l3jznkj	25	8	structures	structure	NNS
cord-325328-3l3jznkj	25	9	in	in	IN
cord-325328-3l3jznkj	25	10	2000	2000	CD
cord-325328-3l3jznkj	25	11	-	-	SYM
cord-325328-3l3jznkj	25	12	2001	2001	CD
cord-325328-3l3jznkj	25	13	demonstrated	demonstrate	VBD
cord-325328-3l3jznkj	25	14	that	that	IN
cord-325328-3l3jznkj	25	15	methods	method	NNS
cord-325328-3l3jznkj	25	16	for	for	IN
cord-325328-3l3jznkj	25	17	the	the	DT
cord-325328-3l3jznkj	25	18	determination	determination	NN
cord-325328-3l3jznkj	25	19	of	of	IN
cord-325328-3l3jznkj	25	20	large	large	JJ
cord-325328-3l3jznkj	25	21	RNA	RNA	NNP
cord-325328-3l3jznkj	25	22	structures	structure	NNS
cord-325328-3l3jznkj	25	23	were	be	VBD
cord-325328-3l3jznkj	25	24	available	available	JJ
cord-325328-3l3jznkj	25	25	.	.	.
cord-325328-3l3jznkj	26	1	These	these	DT
cord-325328-3l3jznkj	26	2	methods	method	NNS
cord-325328-3l3jznkj	26	3	are	be	VBP
cord-325328-3l3jznkj	26	4	now	now	RB
cord-325328-3l3jznkj	26	5	being	be	VBG
cord-325328-3l3jznkj	26	6	widely	widely	RB
cord-325328-3l3jznkj	26	7	applied	apply	VBN
cord-325328-3l3jznkj	26	8	to	to	IN
cord-325328-3l3jznkj	26	9	a	a	DT
cord-325328-3l3jznkj	26	10	variety	variety	NN
cord-325328-3l3jznkj	26	11	of	of	IN
cord-325328-3l3jznkj	26	12	biologically	biologically	RB
cord-325328-3l3jznkj	26	13	important	important	JJ
cord-325328-3l3jznkj	26	14	RNA	RNA	NNP
cord-325328-3l3jznkj	26	15	structure	structure	NN
cord-325328-3l3jznkj	26	16	analyses	analysis	NNS
cord-325328-3l3jznkj	26	17	.	.	.
cord-325328-3l3jznkj	27	1	Structural	structural	JJ
cord-325328-3l3jznkj	27	2	studies	study	NNS
cord-325328-3l3jznkj	27	3	and	and	CC
cord-325328-3l3jznkj	27	4	comparative	comparative	JJ
cord-325328-3l3jznkj	27	5	sequence	sequence	NN
cord-325328-3l3jznkj	27	6	analyses	analysis	NNS
cord-325328-3l3jznkj	27	7	have	have	VBP
cord-325328-3l3jznkj	27	8	suggested	suggest	VBN
cord-325328-3l3jznkj	27	9	that	that	IN
cord-325328-3l3jznkj	27	10	biological	biological	JJ
cord-325328-3l3jznkj	27	11	RNAs	rna	NNS
cord-325328-3l3jznkj	27	12	are	be	VBP
cord-325328-3l3jznkj	27	13	largely	largely	RB
cord-325328-3l3jznkj	27	14	modular	modular	JJ
cord-325328-3l3jznkj	27	15	in	in	IN
cord-325328-3l3jznkj	27	16	nature	nature	NN
cord-325328-3l3jznkj	27	17	,	,	,
cord-325328-3l3jznkj	27	18	composed	compose	VBN
cord-325328-3l3jznkj	27	19	primarily	primarily	RB
cord-325328-3l3jznkj	27	20	of	of	IN
cord-325328-3l3jznkj	27	21	conserved	conserve	VBN
cord-325328-3l3jznkj	27	22	structural	structural	JJ
cord-325328-3l3jznkj	27	23	building	building	NN
cord-325328-3l3jznkj	27	24	blocks	block	NNS
cord-325328-3l3jznkj	27	25	or	or	CC
cord-325328-3l3jznkj	27	26	motifs	motif	NNS
cord-325328-3l3jznkj	27	27	[	[	-LRB-
cord-325328-3l3jznkj	27	28	4	4	CD
cord-325328-3l3jznkj	27	29	]	]	-RRB-
cord-325328-3l3jznkj	27	30	of	of	IN
cord-325328-3l3jznkj	27	31	secondary	secondary	JJ
cord-325328-3l3jznkj	27	32	(	(	-LRB-
cord-325328-3l3jznkj	27	33	helices	helix	NNS
cord-325328-3l3jznkj	27	34	,	,	,
cord-325328-3l3jznkj	27	35	and	and	CC
cord-325328-3l3jznkj	27	36	internal	internal	JJ
cord-325328-3l3jznkj	27	37	,	,	,
cord-325328-3l3jznkj	27	38	external	external	JJ
cord-325328-3l3jznkj	27	39	and	and	CC
cord-325328-3l3jznkj	27	40	junction	junction	NN
cord-325328-3l3jznkj	27	41	loops	loop	NNS
cord-325328-3l3jznkj	27	42	)	)	-RRB-
cord-325328-3l3jznkj	27	43	and	and	CC
cord-325328-3l3jznkj	27	44	tertiary	tertiary	JJ
cord-325328-3l3jznkj	27	45	(	(	-LRB-
cord-325328-3l3jznkj	27	46	coaxial	coaxial	JJ
cord-325328-3l3jznkj	27	47	stacks	stack	NNS
cord-325328-3l3jznkj	27	48	,	,	,
cord-325328-3l3jznkj	27	49	kissing	kiss	VBG
cord-325328-3l3jznkj	27	50	hairpin	hairpin	JJ
cord-325328-3l3jznkj	27	51	loops	loop	NNS
cord-325328-3l3jznkj	27	52	,	,	,
cord-325328-3l3jznkj	27	53	ribose	ribose	NN
cord-325328-3l3jznkj	27	54	zippers	zipper	NNS
cord-325328-3l3jznkj	27	55	,	,	,
cord-325328-3l3jznkj	27	56	etc	etc	FW
cord-325328-3l3jznkj	27	57	.	.	.
cord-325328-3l3jznkj	27	58	)	)	-RRB-
cord-325328-3l3jznkj	28	1	structure	structure	NN
cord-325328-3l3jznkj	28	2	.	.	.
cord-325328-3l3jznkj	29	1	Although	although	IN
cord-325328-3l3jznkj	29	2	many	many	JJ
cord-325328-3l3jznkj	29	3	secondary	secondary	JJ
cord-325328-3l3jznkj	29	4	and	and	CC
cord-325328-3l3jznkj	29	5	tertiary	tertiary	JJ
cord-325328-3l3jznkj	29	6	structure	structure	NN
cord-325328-3l3jznkj	29	7	motifs	motif	NNS
cord-325328-3l3jznkj	29	8	have	have	VBP
cord-325328-3l3jznkj	29	9	been	be	VBN
cord-325328-3l3jznkj	29	10	identified	identify	VBN
cord-325328-3l3jznkj	29	11	and	and	CC
cord-325328-3l3jznkj	29	12	characterized	characterize	VBN
cord-325328-3l3jznkj	29	13	in	in	IN
cord-325328-3l3jznkj	29	14	terms	term	NNS
cord-325328-3l3jznkj	29	15	of	of	IN
cord-325328-3l3jznkj	29	16	sequence	sequence	NN
cord-325328-3l3jznkj	29	17	preference	preference	NN
cord-325328-3l3jznkj	29	18	,	,	,
cord-325328-3l3jznkj	29	19	structural	structural	JJ
cord-325328-3l3jznkj	29	20	constraints	constraint	NNS
cord-325328-3l3jznkj	29	21	,	,	,
cord-325328-3l3jznkj	29	22	energetics	energetic	NNS
cord-325328-3l3jznkj	29	23	and	and	CC
cord-325328-3l3jznkj	29	24	dynamics	dynamic	NNS
cord-325328-3l3jznkj	29	25	,	,	,
cord-325328-3l3jznkj	29	26	it	-PRON-	PRP
cord-325328-3l3jznkj	29	27	is	be	VBZ
cord-325328-3l3jznkj	29	28	an	an	DT
cord-325328-3l3jznkj	29	29	open	open	JJ
cord-325328-3l3jznkj	29	30	question	question	NN
cord-325328-3l3jznkj	29	31	as	as	IN
cord-325328-3l3jznkj	29	32	to	to	IN
cord-325328-3l3jznkj	29	33	whether	whether	IN
cord-325328-3l3jznkj	29	34	we	-PRON-	PRP
cord-325328-3l3jznkj	29	35	have	have	VBP
cord-325328-3l3jznkj	29	36	observed	observe	VBN
cord-325328-3l3jznkj	29	37	a	a	DT
cord-325328-3l3jznkj	29	38	large	large	JJ
cord-325328-3l3jznkj	29	39	or	or	CC
cord-325328-3l3jznkj	29	40	small	small	JJ
cord-325328-3l3jznkj	29	41	fraction	fraction	NN
cord-325328-3l3jznkj	29	42	of	of	IN
cord-325328-3l3jznkj	29	43	the	the	DT
cord-325328-3l3jznkj	29	44	universe	universe	NN
cord-325328-3l3jznkj	29	45	of	of	IN
cord-325328-3l3jznkj	29	46	motifs	motif	NNS
cord-325328-3l3jznkj	29	47	.	.	.
cord-325328-3l3jznkj	30	1	Immediately	immediately	RB
cord-325328-3l3jznkj	30	2	after	after	IN
cord-325328-3l3jznkj	30	3	the	the	DT
cord-325328-3l3jznkj	30	4	structure	structure	NN
cord-325328-3l3jznkj	30	5	determination	determination	NN
cord-325328-3l3jznkj	30	6	of	of	IN
cord-325328-3l3jznkj	30	7	the	the	DT
cord-325328-3l3jznkj	30	8	large	large	JJ
cord-325328-3l3jznkj	30	9	[	[	-LRB-
cord-325328-3l3jznkj	30	10	5	5	CD
cord-325328-3l3jznkj	30	11	,	,	,
cord-325328-3l3jznkj	30	12	6	6	CD
cord-325328-3l3jznkj	30	13	]	]	-RRB-
cord-325328-3l3jznkj	30	14	and	and	CC
cord-325328-3l3jznkj	30	15	small	small	JJ
cord-325328-3l3jznkj	30	16	[	[	-LRB-
cord-325328-3l3jznkj	30	17	7	7	CD
cord-325328-3l3jznkj	30	18	]	]	-RRB-
cord-325328-3l3jznkj	30	19	ribosomal	ribosomal	JJ
cord-325328-3l3jznkj	30	20	subunits	subunit	NNS
cord-325328-3l3jznkj	30	21	,	,	,
cord-325328-3l3jznkj	30	22	inspection	inspection	NN
cord-325328-3l3jznkj	30	23	of	of	IN
cord-325328-3l3jznkj	30	24	the	the	DT
cord-325328-3l3jznkj	30	25	rRNA	rRNA	NNP
cord-325328-3l3jznkj	30	26	structures	structure	NNS
cord-325328-3l3jznkj	30	27	suggested	suggest	VBD
cord-325328-3l3jznkj	30	28	that	that	IN
cord-325328-3l3jznkj	30	29	they	-PRON-	PRP
cord-325328-3l3jznkj	30	30	consisted	consist	VBD
cord-325328-3l3jznkj	30	31	mainly	mainly	RB
cord-325328-3l3jznkj	30	32	of	of	IN
cord-325328-3l3jznkj	30	33	known	know	VBN
cord-325328-3l3jznkj	30	34	RNA	RNA	NNP
cord-325328-3l3jznkj	30	35	structural	structural	JJ
cord-325328-3l3jznkj	30	36	elements	element	NNS
cord-325328-3l3jznkj	30	37	(	(	-LRB-
cord-325328-3l3jznkj	30	38	i.e.	i.e.	FW
cord-325328-3l3jznkj	30	39	few	few	JJ
cord-325328-3l3jznkj	30	40	,	,	,
cord-325328-3l3jznkj	30	41	if	if	IN
cord-325328-3l3jznkj	30	42	any	any	DT
cord-325328-3l3jznkj	30	43	,	,	,
cord-325328-3l3jznkj	30	44	novel	novel	JJ
cord-325328-3l3jznkj	30	45	motifs	motif	NNS
cord-325328-3l3jznkj	30	46	were	be	VBD
cord-325328-3l3jznkj	30	47	observed	observe	VBN
cord-325328-3l3jznkj	30	48	)	)	-RRB-
cord-325328-3l3jznkj	30	49	.	.	.
cord-325328-3l3jznkj	31	1	More	more	RBR
cord-325328-3l3jznkj	31	2	detailed	detailed	JJ
cord-325328-3l3jznkj	31	3	studies	study	NNS
cord-325328-3l3jznkj	31	4	are	be	VBP
cord-325328-3l3jznkj	31	5	showing	show	VBG
cord-325328-3l3jznkj	31	6	,	,	,
cord-325328-3l3jznkj	31	7	however	however	RB
cord-325328-3l3jznkj	31	8	,	,	,
cord-325328-3l3jznkj	31	9	that	that	IN
cord-325328-3l3jznkj	31	10	there	there	EX
cord-325328-3l3jznkj	31	11	is	be	VBZ
cord-325328-3l3jznkj	31	12	an	an	DT
cord-325328-3l3jznkj	31	13	abundance	abundance	NN
cord-325328-3l3jznkj	31	14	of	of	IN
cord-325328-3l3jznkj	31	15	information	information	NN
cord-325328-3l3jznkj	31	16	still	still	RB
cord-325328-3l3jznkj	31	17	to	to	TO
cord-325328-3l3jznkj	31	18	be	be	VB
cord-325328-3l3jznkj	31	19	extracted	extract	VBN
cord-325328-3l3jznkj	31	20	from	from	IN
cord-325328-3l3jznkj	31	21	these	these	DT
cord-325328-3l3jznkj	31	22	structures	structure	NNS
cord-325328-3l3jznkj	31	23	and	and	CC
cord-325328-3l3jznkj	31	24	correlated	correlate	VBD
cord-325328-3l3jznkj	31	25	with	with	IN
cord-325328-3l3jznkj	31	26	RNA	RNA	NNP
cord-325328-3l3jznkj	31	27	structural	structural	JJ
cord-325328-3l3jznkj	31	28	features	feature	NNS
cord-325328-3l3jznkj	31	29	observed	observe	VBN
cord-325328-3l3jznkj	31	30	in	in	IN
cord-325328-3l3jznkj	31	31	other	other	JJ
cord-325328-3l3jznkj	31	32	biomolecules	biomolecule	NNS
cord-325328-3l3jznkj	31	33	.	.	.
cord-325328-3l3jznkj	32	1	The	the	DT
cord-325328-3l3jznkj	32	2	determination	determination	NN
cord-325328-3l3jznkj	32	3	of	of	IN
cord-325328-3l3jznkj	32	4	large	large	JJ
cord-325328-3l3jznkj	32	5	RNA	RNA	NNP
cord-325328-3l3jznkj	32	6	structures	structure	NNS
cord-325328-3l3jznkj	32	7	in	in	IN
cord-325328-3l3jznkj	32	8	many	many	JJ
cord-325328-3l3jznkj	32	9	cases	case	NNS
cord-325328-3l3jznkj	32	10	has	have	VBZ
cord-325328-3l3jznkj	32	11	benefited	benefit	VBN
cord-325328-3l3jznkj	32	12	from	from	IN
cord-325328-3l3jznkj	32	13	the	the	DT
cord-325328-3l3jznkj	32	14	design	design	NN
cord-325328-3l3jznkj	32	15	of	of	IN
cord-325328-3l3jznkj	32	16	more	more	JJR
cord-325328-3l3jznkj	32	17	crystallizable	crystallizable	JJ
cord-325328-3l3jznkj	32	18	sequences	sequence	NNS
cord-325328-3l3jznkj	32	19	,	,	,
cord-325328-3l3jznkj	32	20	based	base	VBN
cord-325328-3l3jznkj	32	21	on	on	IN
cord-325328-3l3jznkj	32	22	an	an	DT
cord-325328-3l3jznkj	32	23	understanding	understanding	NN
cord-325328-3l3jznkj	32	24	of	of	IN
cord-325328-3l3jznkj	32	25	RNA	RNA	NNP
cord-325328-3l3jznkj	32	26	structural	structural	JJ
cord-325328-3l3jznkj	32	27	motifs	motif	NNS
cord-325328-3l3jznkj	32	28	.	.	.
cord-325328-3l3jznkj	33	1	Reciprocally	reciprocally	RB
cord-325328-3l3jznkj	33	2	,	,	,
cord-325328-3l3jznkj	33	3	the	the	DT
cord-325328-3l3jznkj	33	4	identification	identification	NN
cord-325328-3l3jznkj	33	5	and	and	CC
cord-325328-3l3jznkj	33	6	characterization	characterization	NN
cord-325328-3l3jznkj	33	7	of	of	IN
cord-325328-3l3jznkj	33	8	known	know	VBN
cord-325328-3l3jznkj	33	9	and	and	CC
cord-325328-3l3jznkj	33	10	novel	novel	NN
cord-325328-3l3jznkj	33	11	RNA	RNA	NNP
cord-325328-3l3jznkj	33	12	motifs	motif	NNS
cord-325328-3l3jznkj	33	13	are	be	VBP
cord-325328-3l3jznkj	33	14	greatly	greatly	RB
cord-325328-3l3jznkj	33	15	advanced	advance	VBN
cord-325328-3l3jznkj	33	16	by	by	IN
cord-325328-3l3jznkj	33	17	the	the	DT
cord-325328-3l3jznkj	33	18	structure	structure	NN
cord-325328-3l3jznkj	33	19	determination	determination	NN
cord-325328-3l3jznkj	33	20	of	of	IN
cord-325328-3l3jznkj	33	21	new	new	JJ
cord-325328-3l3jznkj	33	22	types	type	NNS
cord-325328-3l3jznkj	33	23	of	of	IN
cord-325328-3l3jznkj	33	24	large	large	JJ
cord-325328-3l3jznkj	33	25	biological	biological	JJ
cord-325328-3l3jznkj	33	26	RNAs	rna	NNS
cord-325328-3l3jznkj	33	27	.	.	.
cord-325328-3l3jznkj	34	1	In	in	IN
cord-325328-3l3jznkj	34	2	this	this	DT
cord-325328-3l3jznkj	34	3	review	review	NN
cord-325328-3l3jznkj	34	4	,	,	,
cord-325328-3l3jznkj	34	5	recent	recent	JJ
cord-325328-3l3jznkj	34	6	structure	structure	NN
cord-325328-3l3jznkj	34	7	determinations	determination	NNS
cord-325328-3l3jznkj	34	8	of	of	IN
cord-325328-3l3jznkj	34	9	several	several	JJ
cord-325328-3l3jznkj	34	10	biological	biological	JJ
cord-325328-3l3jznkj	34	11	RNAs	rna	NNS
cord-325328-3l3jznkj	34	12	are	be	VBP
cord-325328-3l3jznkj	34	13	presented	present	VBN
cord-325328-3l3jznkj	34	14	and	and	CC
cord-325328-3l3jznkj	34	15	described	describe	VBN
cord-325328-3l3jznkj	34	16	.	.	.
cord-325328-3l3jznkj	35	1	The	the	DT
cord-325328-3l3jznkj	35	2	secondary	secondary	JJ
cord-325328-3l3jznkj	35	3	structure	structure	NN
cord-325328-3l3jznkj	35	4	and	and	CC
cord-325328-3l3jznkj	35	5	tertiary	tertiary	JJ
cord-325328-3l3jznkj	35	6	interaction	interaction	NN
cord-325328-3l3jznkj	35	7	motifs	motif	NNS
cord-325328-3l3jznkj	35	8	of	of	IN
cord-325328-3l3jznkj	35	9	these	these	DT
cord-325328-3l3jznkj	35	10	RNAs	rna	NNS
cord-325328-3l3jznkj	35	11	are	be	VBP
cord-325328-3l3jznkj	35	12	analyzed	analyze	VBN
cord-325328-3l3jznkj	35	13	in	in	IN
cord-325328-3l3jznkj	35	14	terms	term	NNS
cord-325328-3l3jznkj	35	15	of	of	IN
cord-325328-3l3jznkj	35	16	our	-PRON-	PRP$
cord-325328-3l3jznkj	35	17	current	current	JJ
cord-325328-3l3jznkj	35	18	knowledge	knowledge	NN
cord-325328-3l3jznkj	35	19	of	of	IN
cord-325328-3l3jznkj	35	20	RNA	RNA	NNP
cord-325328-3l3jznkj	35	21	motifs	motif	NNS
cord-325328-3l3jznkj	35	22	and	and	CC
cord-325328-3l3jznkj	35	23	the	the	DT
cord-325328-3l3jznkj	35	24	novel	novel	JJ
cord-325328-3l3jznkj	35	25	motifs	motif	NNS
cord-325328-3l3jznkj	35	26	observed	observe	VBN
cord-325328-3l3jznkj	35	27	in	in	IN
cord-325328-3l3jznkj	35	28	these	these	DT
cord-325328-3l3jznkj	35	29	structures	structure	NNS
cord-325328-3l3jznkj	35	30	.	.	.
cord-325328-3l3jznkj	36	1	The	the	DT
cord-325328-3l3jznkj	36	2	ability	ability	NN
cord-325328-3l3jznkj	36	3	to	to	TO
cord-325328-3l3jznkj	36	4	partition	partition	VB
cord-325328-3l3jznkj	36	5	large	large	JJ
cord-325328-3l3jznkj	36	6	RNA	RNA	NNP
cord-325328-3l3jznkj	36	7	structures	structure	NNS
cord-325328-3l3jznkj	36	8	into	into	IN
cord-325328-3l3jznkj	36	9	well	well	RB
cord-325328-3l3jznkj	36	10	-	-	HYPH
cord-325328-3l3jznkj	36	11	characterized	characterize	VBN
cord-325328-3l3jznkj	36	12	subunits	subunit	NNS
cord-325328-3l3jznkj	36	13	,	,	,
cord-325328-3l3jznkj	36	14	or	or	CC
cord-325328-3l3jznkj	36	15	motifs	motif	NNS
cord-325328-3l3jznkj	36	16	,	,	,
cord-325328-3l3jznkj	36	17	is	be	VBZ
cord-325328-3l3jznkj	36	18	an	an	DT
cord-325328-3l3jznkj	36	19	important	important	JJ
cord-325328-3l3jznkj	36	20	advance	advance	NN
cord-325328-3l3jznkj	36	21	in	in	IN
cord-325328-3l3jznkj	36	22	understanding	understand	VBG
cord-325328-3l3jznkj	36	23	the	the	DT
cord-325328-3l3jznkj	36	24	relationship	relationship	NN
cord-325328-3l3jznkj	36	25	between	between	IN
cord-325328-3l3jznkj	36	26	structure	structure	NN
cord-325328-3l3jznkj	36	27	and	and	CC
cord-325328-3l3jznkj	36	28	function	function	NN
cord-325328-3l3jznkj	36	29	,	,	,
cord-325328-3l3jznkj	36	30	and	and	CC
cord-325328-3l3jznkj	36	31	in	in	IN
cord-325328-3l3jznkj	36	32	RNA	RNA	NNP
cord-325328-3l3jznkj	36	33	structure	structure	NN
cord-325328-3l3jznkj	36	34	prediction	prediction	NN
cord-325328-3l3jznkj	36	35	and	and	CC
cord-325328-3l3jznkj	36	36	design	design	NN
cord-325328-3l3jznkj	36	37	.	.	.
cord-325328-3l3jznkj	37	1	In	in	IN
cord-325328-3l3jznkj	37	2	addition	addition	NN
cord-325328-3l3jznkj	37	3	to	to	IN
cord-325328-3l3jznkj	37	4	the	the	DT
cord-325328-3l3jznkj	37	5	updated	update	VBN
cord-325328-3l3jznkj	37	6	ribosomal	ribosomal	JJ
cord-325328-3l3jznkj	37	7	subunit	subunit	NN
cord-325328-3l3jznkj	37	8	models	model	NNS
cord-325328-3l3jznkj	37	9	,	,	,
cord-325328-3l3jznkj	37	10	with	with	IN
cord-325328-3l3jznkj	37	11	better	well	JJR
cord-325328-3l3jznkj	37	12	resolution	resolution	NN
cord-325328-3l3jznkj	37	13	,	,	,
cord-325328-3l3jznkj	37	14	and	and	CC
cord-325328-3l3jznkj	37	15	the	the	DT
cord-325328-3l3jznkj	37	16	refinement	refinement	NN
cord-325328-3l3jznkj	37	17	and	and	CC
cord-325328-3l3jznkj	37	18	analysis	analysis	NN
cord-325328-3l3jznkj	37	19	of	of	IN
cord-325328-3l3jznkj	37	20	rRNA	rrna	JJ
cord-325328-3l3jznkj	37	21	interactions	interaction	NNS
cord-325328-3l3jznkj	37	22	with	with	IN
cord-325328-3l3jznkj	37	23	protein	protein	NN
cord-325328-3l3jznkj	37	24	and	and	CC
cord-325328-3l3jznkj	37	25	metal	metal	NN
cord-325328-3l3jznkj	37	26	[	[	-LRB-
cord-325328-3l3jznkj	37	27	8	8	CD
cord-325328-3l3jznkj	37	28	,	,	,
cord-325328-3l3jznkj	37	29	9	9	CD
cord-325328-3l3jznkj	37	30	]	]	-RRB-
cord-325328-3l3jznkj	37	31	,	,	,
cord-325328-3l3jznkj	37	32	many	many	JJ
cord-325328-3l3jznkj	37	33	structures	structure	NNS
cord-325328-3l3jznkj	37	34	of	of	IN
cord-325328-3l3jznkj	37	35	the	the	DT
cord-325328-3l3jznkj	37	36	ribosomal	ribosomal	JJ
cord-325328-3l3jznkj	37	37	subunits	subunit	NNS
cord-325328-3l3jznkj	37	38	bound	bind	VBN
cord-325328-3l3jznkj	37	39	to	to	IN
cord-325328-3l3jznkj	37	40	antibiotics	antibiotic	NNS
cord-325328-3l3jznkj	37	41	[	[	-LRB-
cord-325328-3l3jznkj	37	42	10	10	CD
cord-325328-3l3jznkj	37	43	]	]	-RRB-
cord-325328-3l3jznkj	37	44	and	and	CC
cord-325328-3l3jznkj	37	45	other	other	JJ
cord-325328-3l3jznkj	37	46	ligands	ligand	NNS
cord-325328-3l3jznkj	37	47	[	[	-LRB-
cord-325328-3l3jznkj	37	48	11	11	CD
cord-325328-3l3jznkj	37	49	,	,	,
cord-325328-3l3jznkj	37	50	12	12	CD
cord-325328-3l3jznkj	37	51	]	]	-RRB-
cord-325328-3l3jznkj	37	52	have	have	VBP
cord-325328-3l3jznkj	37	53	been	be	VBN
cord-325328-3l3jznkj	37	54	deposited	deposit	VBN
cord-325328-3l3jznkj	37	55	in	in	IN
cord-325328-3l3jznkj	37	56	the	the	DT
cord-325328-3l3jznkj	37	57	Protein	Protein	NNP
cord-325328-3l3jznkj	37	58	Data	Data	NNP
cord-325328-3l3jznkj	37	59	Bank	Bank	NNP
cord-325328-3l3jznkj	37	60	(	(	-LRB-
cord-325328-3l3jznkj	37	61	PDB	PDB	NNP
cord-325328-3l3jznkj	37	62	)	)	-RRB-
cord-325328-3l3jznkj	37	63	.	.	.
cord-325328-3l3jznkj	38	1	Other	other	JJ
cord-325328-3l3jznkj	38	2	biological	biological	JJ
cord-325328-3l3jznkj	38	3	RNA	RNA	NNP
cord-325328-3l3jznkj	38	4	structures	structure	NNS
cord-325328-3l3jznkj	38	5	that	that	WDT
cord-325328-3l3jznkj	38	6	have	have	VBP
cord-325328-3l3jznkj	38	7	recently	recently	RB
cord-325328-3l3jznkj	38	8	been	be	VBN
cord-325328-3l3jznkj	38	9	determined	determine	VBN
cord-325328-3l3jznkj	38	10	are	be	VBP
cord-325328-3l3jznkj	38	11	summarized	summarize	VBN
cord-325328-3l3jznkj	38	12	in	in	IN
cord-325328-3l3jznkj	38	13	Table	Table	NNP
cord-325328-3l3jznkj	38	14	1	1	CD
cord-325328-3l3jznkj	38	15	.	.	.
cord-325328-3l3jznkj	39	1	Three	three	CD
cord-325328-3l3jznkj	39	2	group	group	NN
cord-325328-3l3jznkj	39	3	I	-PRON-	PRP
cord-325328-3l3jznkj	39	4	introns	intron	NNS
cord-325328-3l3jznkj	39	5	are	be	VBP
cord-325328-3l3jznkj	39	6	among	among	IN
cord-325328-3l3jznkj	39	7	recently	recently	RB
cord-325328-3l3jznkj	39	8	solved	solve	VBN
cord-325328-3l3jznkj	39	9	,	,	,
cord-325328-3l3jznkj	39	10	new	new	JJ
cord-325328-3l3jznkj	39	11	,	,	,
cord-325328-3l3jznkj	39	12	high	high	JJ
cord-325328-3l3jznkj	39	13	-	-	HYPH
cord-325328-3l3jznkj	39	14	impact	impact	NN
cord-325328-3l3jznkj	39	15	,	,	,
cord-325328-3l3jznkj	39	16	biological	biological	JJ
cord-325328-3l3jznkj	39	17	RNA	RNA	NNP
cord-325328-3l3jznkj	39	18	structures	structure	NNS
cord-325328-3l3jznkj	39	19	:	:	:
cord-325328-3l3jznkj	39	20	an	an	DT
cord-325328-3l3jznkj	39	21	intact	intact	JJ
cord-325328-3l3jznkj	39	22	,	,	,
cord-325328-3l3jznkj	39	23	selfsplicing	selfsplice	VBG
cord-325328-3l3jznkj	39	24	group	group	NN
cord-325328-3l3jznkj	39	25	I	-PRON-	PRP
cord-325328-3l3jznkj	39	26	intron	intron	VBP
cord-325328-3l3jznkj	39	27	with	with	IN
cord-325328-3l3jznkj	39	28	both	both	CC
cord-325328-3l3jznkj	39	29	its	-PRON-	PRP$
cord-325328-3l3jznkj	39	30	5	5	CD
cord-325328-3l3jznkj	39	31	0	0	CD
cord-325328-3l3jznkj	39	32	and	and	CC
cord-325328-3l3jznkj	39	33	3	3	CD
cord-325328-3l3jznkj	39	34	0	0	CD
cord-325328-3l3jznkj	39	35	exons	exon	NNS
cord-325328-3l3jznkj	39	36	from	from	IN
cord-325328-3l3jznkj	39	37	the	the	DT
cord-325328-3l3jznkj	39	38	purple	purple	JJ
cord-325328-3l3jznkj	39	39	bacterium	bacterium	NN
cord-325328-3l3jznkj	39	40	Azoarcus	Azoarcus	NNP
cord-325328-3l3jznkj	39	41	sp	sp	NNP
cord-325328-3l3jznkj	39	42	[	[	-LRB-
cord-325328-3l3jznkj	39	43	13	13	CD
cord-325328-3l3jznkj	39	44	,	,	,
cord-325328-3l3jznkj	39	45	14	14	CD
cord-325328-3l3jznkj	39	46	]	]	-RRB-
cord-325328-3l3jznkj	39	47	,	,	,
cord-325328-3l3jznkj	39	48	a	a	DT
cord-325328-3l3jznkj	39	49	group	group	NN
cord-325328-3l3jznkj	39	50	I	-PRON-	PRP
cord-325328-3l3jznkj	39	51	ribozyme	ribozyme	NN
cord-325328-3l3jznkj	39	52	-	-	HYPH
cord-325328-3l3jznkj	39	53	product	product	NN
cord-325328-3l3jznkj	39	54	complex	complex	NN
cord-325328-3l3jznkj	39	55	from	from	IN
cord-325328-3l3jznkj	39	56	phage	phage	NN
cord-325328-3l3jznkj	39	57	Twort	Twort	NNP
cord-325328-3l3jznkj	39	58	[	[	-LRB-
cord-325328-3l3jznkj	39	59	15	15	CD
cord-325328-3l3jznkj	39	60	]	]	-RRB-
cord-325328-3l3jznkj	39	61	and	and	CC
cord-325328-3l3jznkj	39	62	a	a	DT
cord-325328-3l3jznkj	39	63	group	group	NN
cord-325328-3l3jznkj	39	64	I	-PRON-	PRP
cord-325328-3l3jznkj	39	65	intron	intron	NN
cord-325328-3l3jznkj	39	66	ribozyme	ribozyme	VBZ
cord-325328-3l3jznkj	39	67	from	from	IN
cord-325328-3l3jznkj	39	68	Tetrahymena	Tetrahymena	NNP
cord-325328-3l3jznkj	39	69	[	[	-LRB-
cord-325328-3l3jznkj	39	70	16	16	CD
cord-325328-3l3jznkj	39	71	]	]	-RRB-
cord-325328-3l3jznkj	39	72	.	.	.
cord-325328-3l3jznkj	40	1	Other	other	JJ
cord-325328-3l3jznkj	40	2	structures	structure	NNS
cord-325328-3l3jznkj	40	3	include	include	VBP
cord-325328-3l3jznkj	40	4	the	the	DT
cord-325328-3l3jznkj	40	5	specificity	specificity	NN
cord-325328-3l3jznkj	40	6	domains	domain	NNS
cord-325328-3l3jznkj	40	7	of	of	IN
cord-325328-3l3jznkj	40	8	both	both	CC
cord-325328-3l3jznkj	40	9	A-	a-	XX
cord-325328-3l3jznkj	40	10	[	[	-LRB-
cord-325328-3l3jznkj	40	11	17	17	CD
cord-325328-3l3jznkj	40	12	]	]	-RRB-
cord-325328-3l3jznkj	40	13	and	and	CC
cord-325328-3l3jznkj	40	14	B	b	NN
cord-325328-3l3jznkj	40	15	-	-	HYPH
cord-325328-3l3jznkj	40	16	type	type	NN
cord-325328-3l3jznkj	40	17	ribonuclease	ribonuclease	NN
cord-325328-3l3jznkj	40	18	P	p	NN
cord-325328-3l3jznkj	40	19	[	[	-LRB-
cord-325328-3l3jznkj	40	20	18	18	CD
cord-325328-3l3jznkj	40	21	]	]	-RRB-
cord-325328-3l3jznkj	40	22	;	;	:
cord-325328-3l3jznkj	40	23	RNAs	rna	NNS
cord-325328-3l3jznkj	40	24	corresponding	correspond	VBG
cord-325328-3l3jznkj	40	25	to	to	IN
cord-325328-3l3jznkj	40	26	a	a	DT
cord-325328-3l3jznkj	40	27	guanine	guanine	NN
cord-325328-3l3jznkj	40	28	-	-	HYPH
cord-325328-3l3jznkj	40	29	responsive	responsive	JJ
cord-325328-3l3jznkj	40	30	riboswitch	riboswitch	NN
cord-325328-3l3jznkj	40	31	(	(	-LRB-
cord-325328-3l3jznkj	40	32	xpt	xpt	NNP
cord-325328-3l3jznkj	40	33	)	)	-RRB-
cord-325328-3l3jznkj	40	34	complexed	complexe	VBN
cord-325328-3l3jznkj	40	35	with	with	IN
cord-325328-3l3jznkj	40	36	guanine	guanine	NN
cord-325328-3l3jznkj	40	37	[	[	-LRB-
cord-325328-3l3jznkj	40	38	19	19	CD
cord-325328-3l3jznkj	40	39	]	]	-RRB-
cord-325328-3l3jznkj	40	40	or	or	CC
cord-325328-3l3jznkj	40	41	hypoxanthine	hypoxanthine	JJ
cord-325328-3l3jznkj	40	42	[	[	-LRB-
cord-325328-3l3jznkj	40	43	20	20	CD
cord-325328-3l3jznkj	40	44	]	]	-RRB-
cord-325328-3l3jznkj	40	45	,	,	,
cord-325328-3l3jznkj	40	46	and	and	CC
cord-325328-3l3jznkj	40	47	an	an	DT
cord-325328-3l3jznkj	40	48	adenosine	adenosine	NN
cord-325328-3l3jznkj	40	49	-	-	HYPH
cord-325328-3l3jznkj	40	50	responsive	responsive	JJ
cord-325328-3l3jznkj	40	51	riboswitch	riboswitch	NN
cord-325328-3l3jznkj	40	52	(	(	-LRB-
cord-325328-3l3jznkj	40	53	add	add	VB
cord-325328-3l3jznkj	40	54	)	)	-RRB-
cord-325328-3l3jznkj	40	55	complexed	complexe	VBN
cord-325328-3l3jznkj	40	56	with	with	IN
cord-325328-3l3jznkj	40	57	adenosine	adenosine	NN
cord-325328-3l3jznkj	40	58	[	[	-LRB-
cord-325328-3l3jznkj	40	59	19	19	CD
cord-325328-3l3jznkj	40	60	]	]	-RRB-
cord-325328-3l3jznkj	40	61	;	;	:
cord-325328-3l3jznkj	40	62	a	a	DT
cord-325328-3l3jznkj	40	63	highly	highly	RB
cord-325328-3l3jznkj	40	64	conserved	conserve	VBN
cord-325328-3l3jznkj	40	65	stem	stem	NN
cord-325328-3l3jznkj	40	66	-	-	HYPH
cord-325328-3l3jznkj	40	67	loop	loop	NN
cord-325328-3l3jznkj	40	68	motif	motif	NN
cord-325328-3l3jznkj	40	69	found	find	VBN
cord-325328-3l3jznkj	40	70	at	at	IN
cord-325328-3l3jznkj	40	71	the	the	DT
cord-325328-3l3jznkj	40	72	3	3	CD
cord-325328-3l3jznkj	40	73	0	0	CD
cord-325328-3l3jznkj	40	74	end	end	NN
cord-325328-3l3jznkj	40	75	of	of	IN
cord-325328-3l3jznkj	40	76	the	the	DT
cord-325328-3l3jznkj	40	77	genome	genome	NN
cord-325328-3l3jznkj	40	78	of	of	IN
cord-325328-3l3jznkj	40	79	SARS	SARS	NNP
cord-325328-3l3jznkj	40	80	(	(	-LRB-
cord-325328-3l3jznkj	40	81	severe	severe	JJ
cord-325328-3l3jznkj	40	82	acute	acute	JJ
cord-325328-3l3jznkj	40	83	respiratory	respiratory	JJ
cord-325328-3l3jznkj	40	84	syndrome	syndrome	NN
cord-325328-3l3jznkj	40	85	)	)	-RRB-
cord-325328-3l3jznkj	40	86	virus	virus	NN
cord-325328-3l3jznkj	40	87	and	and	CC
cord-325328-3l3jznkj	40	88	other	other	JJ
cord-325328-3l3jznkj	40	89	coronaviruses	coronaviruse	NNS
cord-325328-3l3jznkj	40	90	[	[	-LRB-
cord-325328-3l3jznkj	40	91	21	21	CD
cord-325328-3l3jznkj	40	92	]	]	-RRB-
cord-325328-3l3jznkj	40	93	;	;	:
cord-325328-3l3jznkj	40	94	the	the	DT
cord-325328-3l3jznkj	40	95	core	core	NN
cord-325328-3l3jznkj	40	96	encapsidation	encapsidation	NN
cord-325328-3l3jznkj	40	97	signal	signal	NN
cord-325328-3l3jznkj	40	98	of	of	IN
cord-325328-3l3jznkj	40	99	MMLV	MMLV	NNP
cord-325328-3l3jznkj	40	100	[	[	-LRB-
cord-325328-3l3jznkj	40	101	2	2	CD
cord-325328-3l3jznkj	40	102	]	]	-RRB-
cord-325328-3l3jznkj	40	103	;	;	:
cord-325328-3l3jznkj	40	104	and	and	CC
cord-325328-3l3jznkj	40	105	complexes	complex	NNS
cord-325328-3l3jznkj	40	106	between	between	IN
cord-325328-3l3jznkj	40	107	a	a	DT
cord-325328-3l3jznkj	40	108	high	high	JJ
cord-325328-3l3jznkj	40	109	-	-	HYPH
cord-325328-3l3jznkj	40	110	affinity	affinity	NN
cord-325328-3l3jznkj	40	111	RNA	RNA	NNP
cord-325328-3l3jznkj	40	112	aptamer	aptamer	NN
cord-325328-3l3jznkj	40	113	and	and	CC
cord-325328-3l3jznkj	40	114	the	the	DT
cord-325328-3l3jznkj	40	115	NF	NF	NNP
cord-325328-3l3jznkj	40	116	-	-	HYPH
cord-325328-3l3jznkj	40	117	kB	kB	NNP
cord-325328-3l3jznkj	40	118	p50	p50	NN
cord-325328-3l3jznkj	40	119	homodimer	homodimer	NN
cord-325328-3l3jznkj	40	120	[	[	-LRB-
cord-325328-3l3jznkj	40	121	22	22	CD
cord-325328-3l3jznkj	40	122	]	]	-RRB-
cord-325328-3l3jznkj	40	123	,	,	,
cord-325328-3l3jznkj	40	124	and	and	CC
cord-325328-3l3jznkj	40	125	between	between	IN
cord-325328-3l3jznkj	40	126	the	the	DT
cord-325328-3l3jznkj	40	127	archaeal	archaeal	JJ
cord-325328-3l3jznkj	40	128	RNAbinding	rnabinding	NN
cord-325328-3l3jznkj	40	129	protein	protein	NN
cord-325328-3l3jznkj	40	130	L7Ae	L7Ae	NNP
cord-325328-3l3jznkj	40	131	and	and	CC
cord-325328-3l3jznkj	40	132	an	an	DT
cord-325328-3l3jznkj	40	133	RNA	RNA	NNP
cord-325328-3l3jznkj	40	134	K	k	NN
cord-325328-3l3jznkj	40	135	-	-	HYPH
cord-325328-3l3jznkj	40	136	turn	turn	NN
cord-325328-3l3jznkj	40	137	derived	derive	VBN
cord-325328-3l3jznkj	40	138	from	from	IN
cord-325328-3l3jznkj	40	139	a	a	DT
cord-325328-3l3jznkj	40	140	H	H	NNP
cord-325328-3l3jznkj	40	141	/	/	SYM
cord-325328-3l3jznkj	40	142	ACA	ACA	NNP
cord-325328-3l3jznkj	40	143	small	small	JJ
cord-325328-3l3jznkj	40	144	RNA	RNA	NNP
cord-325328-3l3jznkj	40	145	[	[	-LRB-
cord-325328-3l3jznkj	40	146	23	23	CD
cord-325328-3l3jznkj	40	147	]	]	-RRB-
cord-325328-3l3jznkj	40	148	.	.	.
cord-325328-3l3jznkj	41	1	In	in	IN
cord-325328-3l3jznkj	41	2	addition	addition	NN
cord-325328-3l3jznkj	41	3	,	,	,
cord-325328-3l3jznkj	41	4	a	a	DT
cord-325328-3l3jznkj	41	5	series	series	NN
cord-325328-3l3jznkj	41	6	of	of	IN
cord-325328-3l3jznkj	41	7	crystal	crystal	NN
cord-325328-3l3jznkj	41	8	structures	structure	NNS
cord-325328-3l3jznkj	41	9	of	of	IN
cord-325328-3l3jznkj	41	10	the	the	DT
cord-325328-3l3jznkj	41	11	hepatitis	hepatitis	NN
cord-325328-3l3jznkj	41	12	virus	virus	NN
cord-325328-3l3jznkj	41	13	ribozyme	ribozyme	NNP
cord-325328-3l3jznkj	41	14	in	in	IN
cord-325328-3l3jznkj	41	15	its	-PRON-	PRP$
cord-325328-3l3jznkj	41	16	precleaved	precleaved	JJ
cord-325328-3l3jznkj	41	17	state	state	NN
cord-325328-3l3jznkj	41	18	[	[	-LRB-
cord-325328-3l3jznkj	41	19	24	24	CD
cord-325328-3l3jznkj	41	20	]	]	-RRB-
cord-325328-3l3jznkj	41	21	showed	show	VBD
cord-325328-3l3jznkj	41	22	that	that	IN
cord-325328-3l3jznkj	41	23	significant	significant	JJ
cord-325328-3l3jznkj	41	24	conformational	conformational	JJ
cord-325328-3l3jznkj	41	25	changes	change	NNS
cord-325328-3l3jznkj	41	26	take	take	VBP
cord-325328-3l3jznkj	41	27	place	place	NN
cord-325328-3l3jznkj	41	28	and	and	CC
cord-325328-3l3jznkj	41	29	a	a	DT
cord-325328-3l3jznkj	41	30	metal	metal	NN
cord-325328-3l3jznkj	41	31	ion	ion	NN
cord-325328-3l3jznkj	41	32	is	be	VBZ
cord-325328-3l3jznkj	41	33	lost	lose	VBN
cord-325328-3l3jznkj	41	34	in	in	IN
cord-325328-3l3jznkj	41	35	comparison	comparison	NN
cord-325328-3l3jznkj	41	36	to	to	IN
cord-325328-3l3jznkj	41	37	the	the	DT
cord-325328-3l3jznkj	41	38	product	product	NN
cord-325328-3l3jznkj	41	39	form	form	NN
cord-325328-3l3jznkj	41	40	of	of	IN
cord-325328-3l3jznkj	41	41	the	the	DT
cord-325328-3l3jznkj	41	42	ribozyme	ribozyme	NNS
cord-325328-3l3jznkj	41	43	[	[	-LRB-
cord-325328-3l3jznkj	41	44	25	25	CD
cord-325328-3l3jznkj	41	45	]	]	-RRB-
cord-325328-3l3jznkj	41	46	.	.	.
cord-325328-3l3jznkj	42	1	Finally	finally	RB
cord-325328-3l3jznkj	42	2	,	,	,
cord-325328-3l3jznkj	42	3	structures	structure	NNS
cord-325328-3l3jznkj	42	4	of	of	IN
cord-325328-3l3jznkj	42	5	a	a	DT
cord-325328-3l3jznkj	42	6	high	high	JJ
cord-325328-3l3jznkj	42	7	-	-	HYPH
cord-325328-3l3jznkj	42	8	salt	salt	NN
cord-325328-3l3jznkj	42	9	left	leave	VBN
cord-325328-3l3jznkj	42	10	-	-	HYPH
cord-325328-3l3jznkj	42	11	handed	handed	JJ
cord-325328-3l3jznkj	42	12	RNA	RNA	NNP
cord-325328-3l3jznkj	42	13	duplex	duplex	NN
cord-325328-3l3jznkj	42	14	[	[	-LRB-
cord-325328-3l3jznkj	42	15	26	26	CD
cord-325328-3l3jznkj	42	16	]	]	-RRB-
cord-325328-3l3jznkj	42	17	and	and	CC
cord-325328-3l3jznkj	42	18	a	a	DT
cord-325328-3l3jznkj	42	19	mirror	mirror	NN
cord-325328-3l3jznkj	42	20	image	image	NN
cord-325328-3l3jznkj	42	21	(	(	-LRB-
cord-325328-3l3jznkj	42	22	or	or	CC
cord-325328-3l3jznkj	42	23	L	l	NN
cord-325328-3l3jznkj	42	24	-	-	HYPH
cord-325328-3l3jznkj	42	25	configuration	configuration	NN
cord-325328-3l3jznkj	42	26	)	)	-RRB-
cord-325328-3l3jznkj	42	27	[	[	-LRB-
cord-325328-3l3jznkj	42	28	27	27	CD
cord-325328-3l3jznkj	42	29	]	]	-RRB-
cord-325328-3l3jznkj	42	30	RNA	RNA	NNP
cord-325328-3l3jznkj	42	31	duplex	duplex	NN
cord-325328-3l3jznkj	42	32	show	show	NN
cord-325328-3l3jznkj	42	33	variations	variation	NNS
cord-325328-3l3jznkj	42	34	on	on	IN
cord-325328-3l3jznkj	42	35	the	the	DT
cord-325328-3l3jznkj	42	36	canonical	canonical	JJ
cord-325328-3l3jznkj	42	37	'	'	``
cord-325328-3l3jznkj	42	38	standard	standard	NN
cord-325328-3l3jznkj	42	39	'	'	''
cord-325328-3l3jznkj	42	40	RNA	RNA	NNP
cord-325328-3l3jznkj	42	41	double	double	JJ
cord-325328-3l3jznkj	42	42	helix	helix	NN
cord-325328-3l3jznkj	42	43	.	.	.
cord-325328-3l3jznkj	43	1	These	these	DT
cord-325328-3l3jznkj	43	2	structures	structure	NNS
cord-325328-3l3jznkj	43	3	demonstrate	demonstrate	VBP
cord-325328-3l3jznkj	43	4	not	not	RB
cord-325328-3l3jznkj	43	5	only	only	RB
cord-325328-3l3jznkj	43	6	the	the	DT
cord-325328-3l3jznkj	43	7	prevalence	prevalence	NN
cord-325328-3l3jznkj	43	8	of	of	IN
cord-325328-3l3jznkj	43	9	well	well	RB
cord-325328-3l3jznkj	43	10	-	-	HYPH
cord-325328-3l3jznkj	43	11	known	know	VBN
cord-325328-3l3jznkj	43	12	RNA	RNA	NNP
cord-325328-3l3jznkj	43	13	structural	structural	JJ
cord-325328-3l3jznkj	43	14	motifs	motif	NNS
cord-325328-3l3jznkj	43	15	,	,	,
cord-325328-3l3jznkj	43	16	but	but	CC
cord-325328-3l3jznkj	43	17	also	also	RB
cord-325328-3l3jznkj	43	18	the	the	DT
cord-325328-3l3jznkj	43	19	presence	presence	NN
cord-325328-3l3jznkj	43	20	of	of	IN
cord-325328-3l3jznkj	43	21	numerous	numerous	JJ
cord-325328-3l3jznkj	43	22	novel	novel	JJ
cord-325328-3l3jznkj	43	23	structural	structural	JJ
cord-325328-3l3jznkj	43	24	elements	element	NNS
cord-325328-3l3jznkj	43	25	that	that	WDT
cord-325328-3l3jznkj	43	26	potentially	potentially	RB
cord-325328-3l3jznkj	43	27	may	may	MD
cord-325328-3l3jznkj	43	28	serve	serve	VB
cord-325328-3l3jznkj	43	29	as	as	IN
cord-325328-3l3jznkj	43	30	common	common	JJ
cord-325328-3l3jznkj	43	31	modules	module	NNS
cord-325328-3l3jznkj	43	32	in	in	IN
cord-325328-3l3jznkj	43	33	biological	biological	JJ
cord-325328-3l3jznkj	43	34	RNA	RNA	NNP
cord-325328-3l3jznkj	43	35	.	.	.
cord-325328-3l3jznkj	44	1	Conversely	conversely	RB
cord-325328-3l3jznkj	44	2	,	,	,
cord-325328-3l3jznkj	44	3	the	the	DT
cord-325328-3l3jznkj	44	4	structure	structure	NN
cord-325328-3l3jznkj	44	5	of	of	IN
cord-325328-3l3jznkj	44	6	an	an	DT
cord-325328-3l3jznkj	44	7	alternative	alternative	JJ
cord-325328-3l3jznkj	44	8	tRNA	trna	NN
cord-325328-3l3jznkj	44	9	conformation	conformation	NN
cord-325328-3l3jznkj	44	10	,	,	,
cord-325328-3l3jznkj	44	11	designated	designate	VBN
cord-325328-3l3jznkj	44	12	as	as	IN
cord-325328-3l3jznkj	44	13	lambda	lambda	NN
cord-325328-3l3jznkj	44	14	form	form	NN
cord-325328-3l3jznkj	44	15	,	,	,
cord-325328-3l3jznkj	44	16	has	have	VBZ
cord-325328-3l3jznkj	44	17	been	be	VBN
cord-325328-3l3jznkj	44	18	found	find	VBN
cord-325328-3l3jznkj	44	19	in	in	IN
cord-325328-3l3jznkj	44	20	complex	complex	NN
cord-325328-3l3jznkj	44	21	with	with	IN
cord-325328-3l3jznkj	44	22	the	the	DT
cord-325328-3l3jznkj	44	23	tRNA	tRNA	NNP
cord-325328-3l3jznkj	44	24	modification	modification	NN
cord-325328-3l3jznkj	44	25	enzyme	enzyme	NN
cord-325328-3l3jznkj	44	26	archaeosine	archaeosine	NNP
cord-325328-3l3jznkj	44	27	tRNA	tRNA	NNP
cord-325328-3l3jznkj	44	28	-	-	HYPH
cord-325328-3l3jznkj	44	29	guanine	guanine	NN
cord-325328-3l3jznkj	44	30	transglycosylase	transglycosylase	NN
cord-325328-3l3jznkj	44	31	[	[	-LRB-
cord-325328-3l3jznkj	44	32	28	28	CD
cord-325328-3l3jznkj	44	33	,	,	,
cord-325328-3l3jznkj	44	34	29	29	CD
cord-325328-3l3jznkj	44	35	]	]	-RRB-
cord-325328-3l3jznkj	44	36	.	.	.
cord-325328-3l3jznkj	45	1	In	in	IN
cord-325328-3l3jznkj	45	2	this	this	DT
cord-325328-3l3jznkj	45	3	complex	complex	NN
cord-325328-3l3jznkj	45	4	,	,	,
cord-325328-3l3jznkj	45	5	the	the	DT
cord-325328-3l3jznkj	45	6	tertiary	tertiary	JJ
cord-325328-3l3jznkj	45	7	interactions	interaction	NNS
cord-325328-3l3jznkj	45	8	between	between	IN
cord-325328-3l3jznkj	45	9	the	the	DT
cord-325328-3l3jznkj	45	10	D	d	NN
cord-325328-3l3jznkj	45	11	-	-	HYPH
cord-325328-3l3jznkj	45	12	loop	loop	NN
cord-325328-3l3jznkj	45	13	and	and	CC
cord-325328-3l3jznkj	45	14	Tloop	Tloop	NNP
cord-325328-3l3jznkj	45	15	are	be	VBP
cord-325328-3l3jznkj	45	16	disrupted	disrupt	VBN
cord-325328-3l3jznkj	45	17	,	,	,
cord-325328-3l3jznkj	45	18	leading	lead	VBG
cord-325328-3l3jznkj	45	19	to	to	IN
cord-325328-3l3jznkj	45	20	an	an	DT
cord-325328-3l3jznkj	45	21	alternative	alternative	JJ
cord-325328-3l3jznkj	45	22	base	base	NN
cord-325328-3l3jznkj	45	23	pairing	pairing	NN
cord-325328-3l3jznkj	45	24	pattern	pattern	NN
cord-325328-3l3jznkj	45	25	.	.	.
cord-325328-3l3jznkj	46	1	This	this	DT
cord-325328-3l3jznkj	46	2	suggests	suggest	VBZ
cord-325328-3l3jznkj	46	3	that	that	IN
cord-325328-3l3jznkj	46	4	RNA	RNA	NNP
cord-325328-3l3jznkj	46	5	structure	structure	NN
cord-325328-3l3jznkj	46	6	in	in	IN
cord-325328-3l3jznkj	46	7	general	general	JJ
cord-325328-3l3jznkj	46	8	,	,	,
cord-325328-3l3jznkj	46	9	and	and	CC
cord-325328-3l3jznkj	46	10	motif	motif	NN
cord-325328-3l3jznkj	46	11	structure	structure	NN
cord-325328-3l3jznkj	46	12	specifically	specifically	RB
cord-325328-3l3jznkj	46	13	,	,	,
cord-325328-3l3jznkj	46	14	are	be	VBP
cord-325328-3l3jznkj	46	15	subject	subject	JJ
cord-325328-3l3jznkj	46	16	to	to	IN
cord-325328-3l3jznkj	46	17	change	change	NN
cord-325328-3l3jznkj	46	18	through	through	IN
cord-325328-3l3jznkj	46	19	interaction	interaction	NN
cord-325328-3l3jznkj	46	20	with	with	IN
cord-325328-3l3jznkj	46	21	environmental	environmental	JJ
cord-325328-3l3jznkj	46	22	agents	agent	NNS
cord-325328-3l3jznkj	46	23	such	such	JJ
cord-325328-3l3jznkj	46	24	as	as	IN
cord-325328-3l3jznkj	46	25	proteins	protein	NNS
cord-325328-3l3jznkj	46	26	,	,	,
cord-325328-3l3jznkj	46	27	other	other	JJ
cord-325328-3l3jznkj	46	28	RNAs	rna	NNS
cord-325328-3l3jznkj	46	29	,	,	,
cord-325328-3l3jznkj	46	30	metals	metal	NNS
cord-325328-3l3jznkj	46	31	or	or	CC
cord-325328-3l3jznkj	46	32	other	other	JJ
cord-325328-3l3jznkj	46	33	ligands	ligand	NNS
cord-325328-3l3jznkj	46	34	.	.	.
cord-325328-3l3jznkj	47	1	Number	number	NN
cord-325328-3l3jznkj	47	2	of	of	IN
cord-325328-3l3jznkj	47	3	RNA	RNA	NNP
cord-325328-3l3jznkj	47	4	structures	structure	NNS
cord-325328-3l3jznkj	47	5	deposited	deposit	VBN
cord-325328-3l3jznkj	47	6	in	in	IN
cord-325328-3l3jznkj	47	7	the	the	DT
cord-325328-3l3jznkj	47	8	NDB	ndb	NN
cord-325328-3l3jznkj	47	9	(	(	-LRB-
cord-325328-3l3jznkj	47	10	http://ndbserver.rutgers.edu/	http://ndbserver.rutgers.edu/	ADD
cord-325328-3l3jznkj	47	11	)	)	-RRB-
cord-325328-3l3jznkj	47	12	(	(	-LRB-
cord-325328-3l3jznkj	47	13	dark	dark	JJ
cord-325328-3l3jznkj	47	14	red	red	NNP
cord-325328-3l3jznkj	47	15	)	)	-RRB-
cord-325328-3l3jznkj	47	16	and	and	CC
cord-325328-3l3jznkj	47	17	the	the	DT
cord-325328-3l3jznkj	47	18	average	average	JJ
cord-325328-3l3jznkj	47	19	number	number	NN
cord-325328-3l3jznkj	47	20	of	of	IN
cord-325328-3l3jznkj	47	21	nucleotides	nucleotide	NNS
cord-325328-3l3jznkj	47	22	per	per	IN
cord-325328-3l3jznkj	47	23	structure	structure	NN
cord-325328-3l3jznkj	47	24	(	(	-LRB-
cord-325328-3l3jznkj	47	25	yellow	yellow	JJ
cord-325328-3l3jznkj	47	26	)	)	-RRB-
cord-325328-3l3jznkj	47	27	given	give	VBN
cord-325328-3l3jznkj	47	28	by	by	IN
cord-325328-3l3jznkj	47	29	year	year	NN
cord-325328-3l3jznkj	47	30	.	.	.
cord-325328-3l3jznkj	48	1	Although	although	IN
cord-325328-3l3jznkj	48	2	the	the	DT
cord-325328-3l3jznkj	48	3	number	number	NN
cord-325328-3l3jznkj	48	4	of	of	IN
cord-325328-3l3jznkj	48	5	structure	structure	NN
cord-325328-3l3jznkj	48	6	determinations	determination	NNS
cord-325328-3l3jznkj	48	7	has	have	VBZ
cord-325328-3l3jznkj	48	8	grown	grow	VBN
cord-325328-3l3jznkj	48	9	only	only	RB
cord-325328-3l3jznkj	48	10	slowly	slowly	RB
cord-325328-3l3jznkj	48	11	,	,	,
cord-325328-3l3jznkj	48	12	the	the	DT
cord-325328-3l3jznkj	48	13	average	average	JJ
cord-325328-3l3jznkj	48	14	structure	structure	NN
cord-325328-3l3jznkj	48	15	size	size	NN
cord-325328-3l3jznkj	48	16	has	have	VBZ
cord-325328-3l3jznkj	48	17	dramatically	dramatically	RB
cord-325328-3l3jznkj	48	18	increased	increase	VBN
cord-325328-3l3jznkj	48	19	since	since	IN
cord-325328-3l3jznkj	48	20	2000	2000	CD
cord-325328-3l3jznkj	48	21	.	.	.
cord-325328-3l3jznkj	49	1	The	the	DT
cord-325328-3l3jznkj	49	2	availability	availability	NN
cord-325328-3l3jznkj	49	3	of	of	IN
cord-325328-3l3jznkj	49	4	numerous	numerous	JJ
cord-325328-3l3jznkj	49	5	diverse	diverse	JJ
cord-325328-3l3jznkj	49	6	,	,	,
cord-325328-3l3jznkj	49	7	large	large	JJ
cord-325328-3l3jznkj	49	8	RNA	RNA	NNP
cord-325328-3l3jznkj	49	9	structures	structure	NNS
cord-325328-3l3jznkj	49	10	has	have	VBZ
cord-325328-3l3jznkj	49	11	made	make	VBN
cord-325328-3l3jznkj	49	12	possible	possible	JJ
cord-325328-3l3jznkj	49	13	the	the	DT
cord-325328-3l3jznkj	49	14	identification	identification	NN
cord-325328-3l3jznkj	49	15	and	and	CC
cord-325328-3l3jznkj	49	16	classification	classification	NN
cord-325328-3l3jznkj	49	17	of	of	IN
cord-325328-3l3jznkj	49	18	an	an	DT
cord-325328-3l3jznkj	49	19	increasing	increase	VBG
cord-325328-3l3jznkj	49	20	number	number	NN
cord-325328-3l3jznkj	49	21	of	of	IN
cord-325328-3l3jznkj	49	22	RNA	RNA	NNP
cord-325328-3l3jznkj	49	23	secondary	secondary	JJ
cord-325328-3l3jznkj	49	24	and	and	CC
cord-325328-3l3jznkj	49	25	tertiary	tertiary	JJ
cord-325328-3l3jznkj	49	26	structure	structure	NN
cord-325328-3l3jznkj	49	27	motifs	motif	NNS
cord-325328-3l3jznkj	49	28	.	.	.
cord-325328-3l3jznkj	50	1	Both	both	DT
cord-325328-3l3jznkj	50	2	manual	manual	JJ
cord-325328-3l3jznkj	50	3	and	and	CC
cord-325328-3l3jznkj	50	4	automated	automated	JJ
cord-325328-3l3jznkj	50	5	classification	classification	NN
cord-325328-3l3jznkj	50	6	procedures	procedure	NNS
cord-325328-3l3jznkj	50	7	are	be	VBP
cord-325328-3l3jznkj	50	8	being	be	VBG
cord-325328-3l3jznkj	50	9	used	use	VBN
cord-325328-3l3jznkj	50	10	to	to	TO
cord-325328-3l3jznkj	50	11	identify	identify	VB
cord-325328-3l3jznkj	50	12	and	and	CC
cord-325328-3l3jznkj	50	13	characterize	characterize	VB
cord-325328-3l3jznkj	50	14	motifs	motif	NNS
cord-325328-3l3jznkj	50	15	[	[	-LRB-
cord-325328-3l3jznkj	50	16	4	4	CD
cord-325328-3l3jznkj	50	17	]	]	-RRB-
cord-325328-3l3jznkj	50	18	.	.	.
cord-325328-3l3jznkj	51	1	A	a	DT
cord-325328-3l3jznkj	51	2	database	database	NN
cord-325328-3l3jznkj	51	3	of	of	IN
cord-325328-3l3jznkj	51	4	non	non	JJ
cord-325328-3l3jznkj	51	5	-	-	JJ
cord-325328-3l3jznkj	51	6	canonical	canonical	JJ
cord-325328-3l3jznkj	51	7	base	base	NN
cord-325328-3l3jznkj	51	8	pairs	pair	NNS
cord-325328-3l3jznkj	51	9	in	in	IN
cord-325328-3l3jznkj	51	10	RNA	RNA	NNP
cord-325328-3l3jznkj	51	11	structures	structure	NNS
cord-325328-3l3jznkj	51	12	[	[	-LRB-
cord-325328-3l3jznkj	51	13	30	30	CD
cord-325328-3l3jznkj	51	14	]	]	-RRB-
cord-325328-3l3jznkj	51	15	,	,	,
cord-325328-3l3jznkj	51	16	coupled	couple	VBN
cord-325328-3l3jznkj	51	17	with	with	IN
cord-325328-3l3jznkj	51	18	tools	tool	NNS
cord-325328-3l3jznkj	51	19	for	for	IN
cord-325328-3l3jznkj	51	20	the	the	DT
cord-325328-3l3jznkj	51	21	automatic	automatic	JJ
cord-325328-3l3jznkj	51	22	identification	identification	NN
cord-325328-3l3jznkj	51	23	and	and	CC
cord-325328-3l3jznkj	51	24	classification	classification	NN
cord-325328-3l3jznkj	51	25	of	of	IN
cord-325328-3l3jznkj	51	26	RNA	RNA	NNP
cord-325328-3l3jznkj	51	27	base	base	NN
cord-325328-3l3jznkj	51	28	pairs	pair	NNS
cord-325328-3l3jznkj	51	29	[	[	-LRB-
cord-325328-3l3jznkj	51	30	31	31	CD
cord-325328-3l3jznkj	51	31	]	]	-RRB-
cord-325328-3l3jznkj	51	32	,	,	,
cord-325328-3l3jznkj	51	33	provides	provide	VBZ
cord-325328-3l3jznkj	51	34	an	an	DT
cord-325328-3l3jznkj	51	35	initial	initial	JJ
cord-325328-3l3jznkj	51	36	description	description	NN
cord-325328-3l3jznkj	51	37	of	of	IN
cord-325328-3l3jznkj	51	38	RNA	RNA	NNP
cord-325328-3l3jznkj	51	39	secondary	secondary	JJ
cord-325328-3l3jznkj	51	40	structure	structure	NN
cord-325328-3l3jznkj	51	41	.	.	.
cord-325328-3l3jznkj	52	1	This	this	DT
cord-325328-3l3jznkj	52	2	description	description	NN
cord-325328-3l3jznkj	52	3	can	can	MD
cord-325328-3l3jznkj	52	4	be	be	VB
cord-325328-3l3jznkj	52	5	coupled	couple	VBN
cord-325328-3l3jznkj	52	6	with	with	IN
cord-325328-3l3jznkj	52	7	automated	automated	JJ
cord-325328-3l3jznkj	52	8	motif	motif	NN
cord-325328-3l3jznkj	52	9	searches	search	NNS
cord-325328-3l3jznkj	52	10	[	[	-LRB-
cord-325328-3l3jznkj	52	11	32	32	CD
cord-325328-3l3jznkj	52	12	]	]	-RRB-
cord-325328-3l3jznkj	52	13	[	[	-LRB-
cord-325328-3l3jznkj	52	14	33	33	CD
cord-325328-3l3jznkj	52	15	]	]	-RRB-
cord-325328-3l3jznkj	52	16	[	[	-LRB-
cord-325328-3l3jznkj	52	17	34	34	CD
cord-325328-3l3jznkj	52	18	]	]	-RRB-
cord-325328-3l3jznkj	52	19	,	,	,
cord-325328-3l3jznkj	52	20	identifying	identify	VBG
cord-325328-3l3jznkj	52	21	both	both	DT
cord-325328-3l3jznkj	52	22	previously	previously	RB
cord-325328-3l3jznkj	52	23	known	know	VBN
cord-325328-3l3jznkj	52	24	and	and	CC
cord-325328-3l3jznkj	52	25	new	new	JJ
cord-325328-3l3jznkj	52	26	RNA	RNA	NNP
cord-325328-3l3jznkj	52	27	motifs	motif	NNS
cord-325328-3l3jznkj	52	28	.	.	.
cord-325328-3l3jznkj	53	1	The	the	DT
cord-325328-3l3jznkj	53	2	SCOR	SCOR	NNP
cord-325328-3l3jznkj	53	3	(	(	-LRB-
cord-325328-3l3jznkj	53	4	Structural	Structural	NNP
cord-325328-3l3jznkj	53	5	Classification	Classification	NNP
cord-325328-3l3jznkj	53	6	of	of	IN
cord-325328-3l3jznkj	53	7	RNA	RNA	NNP
cord-325328-3l3jznkj	53	8	)	)	-RRB-
cord-325328-3l3jznkj	53	9	database	database	NN
cord-325328-3l3jznkj	53	10	is	be	VBZ
cord-325328-3l3jznkj	53	11	a	a	DT
cord-325328-3l3jznkj	53	12	comprehensive	comprehensive	JJ
cord-325328-3l3jznkj	53	13	,	,	,
cord-325328-3l3jznkj	53	14	manually	manually	RB
cord-325328-3l3jznkj	53	15	curated	curate	VBN
cord-325328-3l3jznkj	53	16	resource	resource	NN
cord-325328-3l3jznkj	53	17	of	of	IN
cord-325328-3l3jznkj	53	18	RNA	RNA	NNP
cord-325328-3l3jznkj	53	19	structural	structural	JJ
cord-325328-3l3jznkj	53	20	motifs	motif	NNS
cord-325328-3l3jznkj	53	21	that	that	WDT
cord-325328-3l3jznkj	53	22	utilizes	utilize	VBZ
cord-325328-3l3jznkj	53	23	automated	automate	VBN
cord-325328-3l3jznkj	53	24	tools	tool	NNS
cord-325328-3l3jznkj	53	25	and	and	CC
cord-325328-3l3jznkj	53	26	literature	literature	NN
cord-325328-3l3jznkj	53	27	descriptions	description	NNS
cord-325328-3l3jznkj	53	28	to	to	TO
cord-325328-3l3jznkj	53	29	assist	assist	VB
cord-325328-3l3jznkj	53	30	in	in	IN
cord-325328-3l3jznkj	53	31	the	the	DT
cord-325328-3l3jznkj	53	32	classification	classification	NN
cord-325328-3l3jznkj	53	33	of	of	IN
cord-325328-3l3jznkj	53	34	RNA	RNA	NNP
cord-325328-3l3jznkj	53	35	secondary	secondary	JJ
cord-325328-3l3jznkj	53	36	and	and	CC
cord-325328-3l3jznkj	53	37	tertiary	tertiary	JJ
cord-325328-3l3jznkj	53	38	structure	structure	NN
cord-325328-3l3jznkj	53	39	motifs	motif	NNS
cord-325328-3l3jznkj	53	40	[	[	-LRB-
cord-325328-3l3jznkj	53	41	35	35	CD
cord-325328-3l3jznkj	53	42	,	,	,
cord-325328-3l3jznkj	53	43	36	36	CD
cord-325328-3l3jznkj	53	44	]	]	-RRB-
cord-325328-3l3jznkj	53	45	.	.	.
cord-325328-3l3jznkj	54	1	Characterization	characterization	NN
cord-325328-3l3jznkj	54	2	of	of	IN
cord-325328-3l3jznkj	54	3	these	these	DT
cord-325328-3l3jznkj	54	4	motifs	motif	NNS
cord-325328-3l3jznkj	54	5	or	or	CC
cord-325328-3l3jznkj	54	6	RNA	RNA	NNP
cord-325328-3l3jznkj	54	7	building	building	NN
cord-325328-3l3jznkj	54	8	blocks	block	NNS
cord-325328-3l3jznkj	54	9	in	in	IN
cord-325328-3l3jznkj	54	10	turn	turn	NN
cord-325328-3l3jznkj	54	11	is	be	VBZ
cord-325328-3l3jznkj	54	12	enabling	enable	VBG
cord-325328-3l3jznkj	54	13	RNA	RNA	NNP
cord-325328-3l3jznkj	54	14	design	design	NN
cord-325328-3l3jznkj	54	15	[	[	-LRB-
cord-325328-3l3jznkj	54	16	37	37	CD
cord-325328-3l3jznkj	54	17	,	,	,
cord-325328-3l3jznkj	54	18	38	38	CD
cord-325328-3l3jznkj	54	19	]	]	-RRB-
cord-325328-3l3jznkj	54	20	,	,	,
cord-325328-3l3jznkj	54	21	RNA	RNA	NNP
cord-325328-3l3jznkj	54	22	structure	structure	NN
cord-325328-3l3jznkj	54	23	prediction	prediction	NN
cord-325328-3l3jznkj	54	24	,	,	,
cord-325328-3l3jznkj	54	25	RNA	RNA	NNP
cord-325328-3l3jznkj	54	26	modeling	modeling	NN
cord-325328-3l3jznkj	54	27	and	and	CC
cord-325328-3l3jznkj	54	28	RNA	RNA	NNP
cord-325328-3l3jznkj	54	29	gene	gene	NN
cord-325328-3l3jznkj	54	30	finding	find	VBG
cord-325328-3l3jznkj	54	31	[	[	-LRB-
cord-325328-3l3jznkj	54	32	39	39	CD
cord-325328-3l3jznkj	54	33	]	]	-RRB-
cord-325328-3l3jznkj	54	34	.	.	.
cord-325328-3l3jznkj	55	1	Recently	recently	RB
cord-325328-3l3jznkj	55	2	determined	determine	VBN
cord-325328-3l3jznkj	55	3	crystal	crystal	NN
cord-325328-3l3jznkj	55	4	structures	structure	NNS
cord-325328-3l3jznkj	55	5	of	of	IN
cord-325328-3l3jznkj	55	6	RNA	RNA	NNP
cord-325328-3l3jznkj	55	7	and	and	CC
cord-325328-3l3jznkj	55	8	RNA	RNA	NNP
cord-325328-3l3jznkj	55	9	-	-	HYPH
cord-325328-3l3jznkj	55	10	protein	protein	NN
cord-325328-3l3jznkj	55	11	complexes	complex	NNS
cord-325328-3l3jznkj	55	12	(	(	-LRB-
cord-325328-3l3jznkj	55	13	in	in	IN
cord-325328-3l3jznkj	55	14	addition	addition	NN
cord-325328-3l3jznkj	55	15	to	to	IN
cord-325328-3l3jznkj	55	16	rRNA	rrna	JJ
cord-325328-3l3jznkj	55	17	structures	structure	NNS
cord-325328-3l3jznkj	55	18	)	)	-RRB-
cord-325328-3l3jznkj	55	19	are	be	VBP
cord-325328-3l3jznkj	55	20	revealing	reveal	VBG
cord-325328-3l3jznkj	55	21	many	many	JJ
cord-325328-3l3jznkj	55	22	new	new	JJ
cord-325328-3l3jznkj	55	23	structural	structural	JJ
cord-325328-3l3jznkj	55	24	elements	element	NNS
cord-325328-3l3jznkj	55	25	,	,	,
cord-325328-3l3jznkj	55	26	in	in	IN
cord-325328-3l3jznkj	55	27	addition	addition	NN
cord-325328-3l3jznkj	55	28	to	to	IN
cord-325328-3l3jznkj	55	29	previously	previously	RB
cord-325328-3l3jznkj	55	30	characterized	characterize	VBN
cord-325328-3l3jznkj	55	31	motifs	motif	NNS
cord-325328-3l3jznkj	55	32	(	(	-LRB-
cord-325328-3l3jznkj	55	33	as	as	IN
cord-325328-3l3jznkj	55	34	summarized	summarize	VBN
cord-325328-3l3jznkj	55	35	in	in	IN
cord-325328-3l3jznkj	55	36	Table	Table	NNP
cord-325328-3l3jznkj	55	37	1	1	CD
cord-325328-3l3jznkj	55	38	)	)	-RRB-
cord-325328-3l3jznkj	55	39	.	.	.
cord-325328-3l3jznkj	56	1	As	as	IN
cord-325328-3l3jznkj	56	2	additional	additional	JJ
cord-325328-3l3jznkj	56	3	RNA	RNA	NNP
cord-325328-3l3jznkj	56	4	structures	structure	NNS
cord-325328-3l3jznkj	56	5	are	be	VBP
cord-325328-3l3jznkj	56	6	determined	determine	VBN
cord-325328-3l3jznkj	56	7	,	,	,
cord-325328-3l3jznkj	56	8	304	304	CD
cord-325328-3l3jznkj	56	9	Sequences	Sequences	NNPS
cord-325328-3l3jznkj	56	10	and	and	CC
cord-325328-3l3jznkj	56	11	topology	topology	VB
cord-325328-3l3jznkj	56	12	the	the	DT
cord-325328-3l3jznkj	56	13	occurrence	occurrence	NN
cord-325328-3l3jznkj	56	14	of	of	IN
cord-325328-3l3jznkj	56	15	these	these	DT
cord-325328-3l3jznkj	56	16	elements	element	NNS
cord-325328-3l3jznkj	56	17	may	may	MD
cord-325328-3l3jznkj	56	18	indicate	indicate	VB
cord-325328-3l3jznkj	56	19	that	that	IN
cord-325328-3l3jznkj	56	20	they	-PRON-	PRP
cord-325328-3l3jznkj	56	21	are	be	VBP
cord-325328-3l3jznkj	56	22	common	common	JJ
cord-325328-3l3jznkj	56	23	structural	structural	JJ
cord-325328-3l3jznkj	56	24	motifs	motif	NNS
cord-325328-3l3jznkj	56	25	,	,	,
cord-325328-3l3jznkj	56	26	and	and	CC
cord-325328-3l3jznkj	56	27	thus	thus	RB
cord-325328-3l3jznkj	56	28	enable	enable	VB
cord-325328-3l3jznkj	56	29	their	-PRON-	PRP$
cord-325328-3l3jznkj	56	30	characterization	characterization	NN
cord-325328-3l3jznkj	56	31	by	by	IN
cord-325328-3l3jznkj	56	32	sequence	sequence	NN
cord-325328-3l3jznkj	56	33	,	,	,
cord-325328-3l3jznkj	56	34	structure	structure	NN
cord-325328-3l3jznkj	56	35	and	and	CC
cord-325328-3l3jznkj	56	36	function	function	NN
cord-325328-3l3jznkj	56	37	.	.	.
cord-325328-3l3jznkj	57	1	Presented	present	VBN
cord-325328-3l3jznkj	57	2	below	below	RB
cord-325328-3l3jznkj	57	3	are	be	VBP
cord-325328-3l3jznkj	57	4	examples	example	NNS
cord-325328-3l3jznkj	57	5	of	of	IN
cord-325328-3l3jznkj	57	6	recently	recently	RB
cord-325328-3l3jznkj	57	7	determined	determine	VBN
cord-325328-3l3jznkj	57	8	RNA	RNA	NNP
cord-325328-3l3jznkj	57	9	structures	structure	NNS
cord-325328-3l3jznkj	57	10	that	that	WDT
cord-325328-3l3jznkj	57	11	have	have	VBP
cord-325328-3l3jznkj	57	12	both	both	DT
cord-325328-3l3jznkj	57	13	known	know	VBN
cord-325328-3l3jznkj	57	14	RNA	RNA	NNP
cord-325328-3l3jznkj	57	15	motifs	motif	NNS
cord-325328-3l3jznkj	57	16	and	and	CC
cord-325328-3l3jznkj	57	17	novel	novel	JJ
cord-325328-3l3jznkj	57	18	structural	structural	JJ
cord-325328-3l3jznkj	57	19	features	feature	NNS
cord-325328-3l3jznkj	57	20	that	that	WDT
cord-325328-3l3jznkj	57	21	may	may	MD
cord-325328-3l3jznkj	57	22	correspond	correspond	VB
cord-325328-3l3jznkj	57	23	to	to	IN
cord-325328-3l3jznkj	57	24	new	new	JJ
cord-325328-3l3jznkj	57	25	structural	structural	JJ
cord-325328-3l3jznkj	57	26	motifs	motif	NNS
cord-325328-3l3jznkj	57	27	.	.	.
cord-325328-3l3jznkj	58	1	These	these	DT
cord-325328-3l3jznkj	58	2	motifs	motif	NNS
cord-325328-3l3jznkj	58	3	are	be	VBP
cord-325328-3l3jznkj	58	4	likely	likely	JJ
cord-325328-3l3jznkj	58	5	to	to	TO
cord-325328-3l3jznkj	58	6	be	be	VB
cord-325328-3l3jznkj	58	7	crucial	crucial	JJ
cord-325328-3l3jznkj	58	8	to	to	IN
cord-325328-3l3jznkj	58	9	both	both	DT
cord-325328-3l3jznkj	58	10	biological	biological	JJ
cord-325328-3l3jznkj	58	11	function	function	NN
cord-325328-3l3jznkj	58	12	and	and	CC
cord-325328-3l3jznkj	58	13	three	three	CD
cord-325328-3l3jznkj	58	14	-	-	HYPH
cord-325328-3l3jznkj	58	15	dimensional	dimensional	JJ
cord-325328-3l3jznkj	58	16	structure	structure	NN
cord-325328-3l3jznkj	58	17	.	.	.
cord-325328-3l3jznkj	59	1	The	the	DT
cord-325328-3l3jznkj	59	2	3	3	CD
cord-325328-3l3jznkj	59	3	0	0	CD
cord-325328-3l3jznkj	59	4	end	end	NN
cord-325328-3l3jznkj	59	5	of	of	IN
cord-325328-3l3jznkj	59	6	the	the	DT
cord-325328-3l3jznkj	59	7	genome	genome	NN
cord-325328-3l3jznkj	59	8	of	of	IN
cord-325328-3l3jznkj	59	9	SARS	SARS	NNP
cord-325328-3l3jznkj	59	10	virus	virus	NN
cord-325328-3l3jznkj	59	11	and	and	CC
cord-325328-3l3jznkj	59	12	related	related	JJ
cord-325328-3l3jznkj	59	13	coronaviruses	coronaviruse	NNS
cord-325328-3l3jznkj	59	14	and	and	CC
cord-325328-3l3jznkj	59	15	astroviruses	astroviruses	NNP
cord-325328-3l3jznkj	59	16	contains	contain	VBZ
cord-325328-3l3jznkj	59	17	a	a	DT
cord-325328-3l3jznkj	59	18	highly	highly	RB
cord-325328-3l3jznkj	59	19	conserved	conserve	VBN
cord-325328-3l3jznkj	59	20	sequence	sequence	NN
cord-325328-3l3jznkj	59	21	called	call	VBN
cord-325328-3l3jznkj	59	22	the	the	DT
cord-325328-3l3jznkj	59	23	s2	s2	NNP
cord-325328-3l3jznkj	59	24	m	m	NNP
cord-325328-3l3jznkj	59	25	or	or	CC
cord-325328-3l3jznkj	59	26	stem	stem	NN
cord-325328-3l3jznkj	59	27	-	-	HYPH
cord-325328-3l3jznkj	59	28	loop	loop	NN
cord-325328-3l3jznkj	59	29	II	II	NNP
cord-325328-3l3jznkj	59	30	element	element	NN
cord-325328-3l3jznkj	59	31	.	.	.
cord-325328-3l3jznkj	60	1	As	as	IN
cord-325328-3l3jznkj	60	2	shown	show	VBN
cord-325328-3l3jznkj	60	3	in	in	IN
cord-325328-3l3jznkj	60	4	Table	Table	NNP
cord-325328-3l3jznkj	60	5	1	1	CD
cord-325328-3l3jznkj	60	6	,	,	,
cord-325328-3l3jznkj	60	7	the	the	DT
cord-325328-3l3jznkj	60	8	crystal	crystal	NN
cord-325328-3l3jznkj	60	9	structure	structure	NN
cord-325328-3l3jznkj	60	10	of	of	IN
cord-325328-3l3jznkj	60	11	a	a	DT
cord-325328-3l3jznkj	60	12	48-nucleotide	48-nucleotide	CD
cord-325328-3l3jznkj	60	13	RNA	RNA	NNP
cord-325328-3l3jznkj	60	14	corresponding	correspond	VBG
cord-325328-3l3jznkj	60	15	to	to	IN
cord-325328-3l3jznkj	60	16	this	this	DT
cord-325328-3l3jznkj	60	17	element	element	NN
cord-325328-3l3jznkj	60	18	has	have	VBZ
cord-325328-3l3jznkj	60	19	been	be	VBN
cord-325328-3l3jznkj	60	20	solved	solve	VBN
cord-325328-3l3jznkj	60	21	at	at	IN
cord-325328-3l3jznkj	60	22	2.7	2.7	CD
cord-325328-3l3jznkj	60	23	Å	å	NN
cord-325328-3l3jznkj	60	24	resolution	resolution	NN
cord-325328-3l3jznkj	60	25	[	[	-LRB-
cord-325328-3l3jznkj	60	26	21	21	CD
cord-325328-3l3jznkj	60	27	]	]	-RRB-
cord-325328-3l3jznkj	60	28	.	.	.
cord-325328-3l3jznkj	61	1	In	in	IN
cord-325328-3l3jznkj	61	2	addition	addition	NN
cord-325328-3l3jznkj	61	3	to	to	IN
cord-325328-3l3jznkj	61	4	previously	previously	RB
cord-325328-3l3jznkj	61	5	characterized	characterize	VBN
cord-325328-3l3jznkj	61	6	RNA	RNA	NNP
cord-325328-3l3jznkj	61	7	structural	structural	JJ
cord-325328-3l3jznkj	61	8	motifs	motif	NNS
cord-325328-3l3jznkj	61	9	,	,	,
cord-325328-3l3jznkj	61	10	such	such	JJ
cord-325328-3l3jznkj	61	11	as	as	IN
cord-325328-3l3jznkj	61	12	a	a	DT
cord-325328-3l3jznkj	61	13	GNRA	GNRA	NNP
cord-325328-3l3jznkj	61	14	-	-	HYPH
cord-325328-3l3jznkj	61	15	like	like	JJ
cord-325328-3l3jznkj	61	16	pentaloop	pentaloop	NN
cord-325328-3l3jznkj	61	17	and	and	CC
cord-325328-3l3jznkj	61	18	a	a	DT
cord-325328-3l3jznkj	61	19	dinucleotide	dinucleotide	NN
cord-325328-3l3jznkj	61	20	platform	platform	NN
cord-325328-3l3jznkj	61	21	base	base	NN
cord-325328-3l3jznkj	61	22	triple	triple	JJ
cord-325328-3l3jznkj	61	23	[	[	-LRB-
cord-325328-3l3jznkj	61	24	36	36	CD
cord-325328-3l3jznkj	61	25	]	]	-RRB-
cord-325328-3l3jznkj	61	26	,	,	,
cord-325328-3l3jznkj	61	27	novel	novel	JJ
cord-325328-3l3jznkj	61	28	structural	structural	JJ
cord-325328-3l3jznkj	61	29	features	feature	NNS
cord-325328-3l3jznkj	61	30	were	be	VBD
cord-325328-3l3jznkj	61	31	observed	observe	VBN
cord-325328-3l3jznkj	61	32	.	.	.
cord-325328-3l3jznkj	62	1	A	a	DT
cord-325328-3l3jznkj	62	2	unique	unique	JJ
cord-325328-3l3jznkj	62	3	base	base	NN
cord-325328-3l3jznkj	62	4	quartet	quartet	NN
cord-325328-3l3jznkj	62	5	is	be	VBZ
cord-325328-3l3jznkj	62	6	formed	form	VBN
cord-325328-3l3jznkj	62	7	between	between	IN
cord-325328-3l3jznkj	62	8	Watson	Watson	NNP
cord-325328-3l3jznkj	62	9	-	-	HYPH
cord-325328-3l3jznkj	62	10	Crick	Crick	NNP
cord-325328-3l3jznkj	62	11	GC	GC	NNP
cord-325328-3l3jznkj	62	12	pairs	pair	NNS
cord-325328-3l3jznkj	62	13	at	at	IN
cord-325328-3l3jznkj	62	14	the	the	DT
cord-325328-3l3jznkj	62	15	junction	junction	NN
cord-325328-3l3jznkj	62	16	of	of	IN
cord-325328-3l3jznkj	62	17	two	two	CD
cord-325328-3l3jznkj	62	18	helices	helix	NNS
cord-325328-3l3jznkj	62	19	,	,	,
cord-325328-3l3jznkj	62	20	as	as	IN
cord-325328-3l3jznkj	62	21	shown	show	VBN
cord-325328-3l3jznkj	62	22	in	in	IN
cord-325328-3l3jznkj	62	23	Figure	figure	NN
cord-325328-3l3jznkj	62	24	2	2	CD
cord-325328-3l3jznkj	62	25	.	.	.
cord-325328-3l3jznkj	63	1	Another	another	DT
cord-325328-3l3jznkj	63	2	novel	novel	JJ
cord-325328-3l3jznkj	63	3	RNA	RNA	NNP
cord-325328-3l3jznkj	63	4	structural	structural	JJ
cord-325328-3l3jznkj	63	5	feature	feature	NN
cord-325328-3l3jznkj	63	6	is	be	VBZ
cord-325328-3l3jznkj	63	7	formed	form	VBN
cord-325328-3l3jznkj	63	8	by	by	IN
cord-325328-3l3jznkj	63	9	a	a	DT
cord-325328-3l3jznkj	63	10	three	three	CD
cord-325328-3l3jznkj	63	11	-	-	HYPH
cord-325328-3l3jznkj	63	12	purine	purine	NN
cord-325328-3l3jznkj	63	13	bulge	bulge	NN
cord-325328-3l3jznkj	63	14	that	that	WDT
cord-325328-3l3jznkj	63	15	excludes	exclude	VBZ
cord-325328-3l3jznkj	63	16	an	an	DT
cord-325328-3l3jznkj	63	17	adenosine	adenosine	NN
cord-325328-3l3jznkj	63	18	from	from	IN
cord-325328-3l3jznkj	63	19	the	the	DT
cord-325328-3l3jznkj	63	20	central	central	JJ
cord-325328-3l3jznkj	63	21	stack	stack	NN
cord-325328-3l3jznkj	63	22	and	and	CC
cord-325328-3l3jznkj	63	23	forms	form	VBZ
cord-325328-3l3jznkj	63	24	tertiary	tertiary	JJ
cord-325328-3l3jznkj	63	25	interactions	interaction	NNS
cord-325328-3l3jznkj	63	26	with	with	IN
cord-325328-3l3jznkj	63	27	residues	residue	NNS
cord-325328-3l3jznkj	63	28	from	from	IN
cord-325328-3l3jznkj	63	29	an	an	DT
cord-325328-3l3jznkj	63	30	asymmetric	asymmetric	JJ
cord-325328-3l3jznkj	63	31	internal	internal	JJ
cord-325328-3l3jznkj	63	32	loop	loop	NN
cord-325328-3l3jznkj	63	33	,	,	,
cord-325328-3l3jznkj	63	34	forming	form	VBG
cord-325328-3l3jznkj	63	35	a	a	DT
cord-325328-3l3jznkj	63	36	'	'	``
cord-325328-3l3jznkj	63	37	tunnel	tunnel	NN
cord-325328-3l3jznkj	63	38	'	'	''
cord-325328-3l3jznkj	63	39	that	that	WDT
cord-325328-3l3jznkj	63	40	serves	serve	VBZ
cord-325328-3l3jznkj	63	41	as	as	IN
cord-325328-3l3jznkj	63	42	a	a	DT
cord-325328-3l3jznkj	63	43	binding	binding	JJ
cord-325328-3l3jznkj	63	44	site	site	NN
cord-325328-3l3jznkj	63	45	for	for	IN
cord-325328-3l3jznkj	63	46	two	two	CD
cord-325328-3l3jznkj	63	47	magnesium	magnesium	NN
cord-325328-3l3jznkj	63	48	ions	ion	NNS
cord-325328-3l3jznkj	63	49	[	[	-LRB-
cord-325328-3l3jznkj	63	50	21	21	CD
cord-325328-3l3jznkj	63	51	]	]	-RRB-
cord-325328-3l3jznkj	63	52	.	.	.
cord-325328-3l3jznkj	64	1	The	the	DT
cord-325328-3l3jznkj	64	2	interaction	interaction	NN
cord-325328-3l3jznkj	64	3	between	between	IN
cord-325328-3l3jznkj	64	4	two	two	CD
cord-325328-3l3jznkj	64	5	hairpin	hairpin	JJ
cord-325328-3l3jznkj	64	6	loops	loop	NNS
cord-325328-3l3jznkj	64	7	in	in	IN
cord-325328-3l3jznkj	64	8	the	the	DT
cord-325328-3l3jznkj	64	9	guanineresponsive	guanineresponsive	JJ
cord-325328-3l3jznkj	64	10	riboswitch	riboswitch	NN
cord-325328-3l3jznkj	64	11	is	be	VBZ
cord-325328-3l3jznkj	64	12	required	require	VBN
cord-325328-3l3jznkj	64	13	for	for	IN
cord-325328-3l3jznkj	64	14	its	-PRON-	PRP$
cord-325328-3l3jznkj	64	15	biological	biological	JJ
cord-325328-3l3jznkj	64	16	function	function	NN
cord-325328-3l3jznkj	64	17	.	.	.
cord-325328-3l3jznkj	65	1	Crystal	crystal	NN
cord-325328-3l3jznkj	65	2	structures	structure	NNS
cord-325328-3l3jznkj	65	3	of	of	IN
cord-325328-3l3jznkj	65	4	the	the	DT
cord-325328-3l3jznkj	65	5	riboswitch	riboswitch	NN
cord-325328-3l3jznkj	65	6	-	-	HYPH
cord-325328-3l3jznkj	65	7	hypoxanthine	hypoxanthine	NN
cord-325328-3l3jznkj	65	8	complex	complex	NN
cord-325328-3l3jznkj	65	9	[	[	-LRB-
cord-325328-3l3jznkj	65	10	20	20	CD
cord-325328-3l3jznkj	65	11	]	]	-RRB-
cord-325328-3l3jznkj	65	12	and	and	CC
cord-325328-3l3jznkj	65	13	the	the	DT
cord-325328-3l3jznkj	65	14	riboswitch	riboswitch	NN
cord-325328-3l3jznkj	65	15	-	-	HYPH
cord-325328-3l3jznkj	65	16	guanine	guanine	NN
cord-325328-3l3jznkj	65	17	complex	complex	NN
cord-325328-3l3jznkj	65	18	[	[	-LRB-
cord-325328-3l3jznkj	65	19	19	19	CD
cord-325328-3l3jznkj	65	20	]	]	-RRB-
cord-325328-3l3jznkj	65	21	show	show	VBP
cord-325328-3l3jznkj	65	22	the	the	DT
cord-325328-3l3jznkj	65	23	detail	detail	NN
cord-325328-3l3jznkj	65	24	of	of	IN
cord-325328-3l3jznkj	65	25	this	this	DT
cord-325328-3l3jznkj	65	26	tertiary	tertiary	JJ
cord-325328-3l3jznkj	65	27	interaction	interaction	NN
cord-325328-3l3jznkj	65	28	between	between	IN
cord-325328-3l3jznkj	65	29	these	these	DT
cord-325328-3l3jznkj	65	30	seven	seven	CD
cord-325328-3l3jznkj	65	31	-	-	HYPH
cord-325328-3l3jznkj	65	32	nucleotide	nucleotide	JJ
cord-325328-3l3jznkj	65	33	loops	loop	NNS
cord-325328-3l3jznkj	65	34	,	,	,
cord-325328-3l3jznkj	65	35	as	as	IN
cord-325328-3l3jznkj	65	36	shown	show	VBN
cord-325328-3l3jznkj	65	37	in	in	IN
cord-325328-3l3jznkj	65	38	Figure	Figure	NNP
cord-325328-3l3jznkj	65	39	3	3	CD
cord-325328-3l3jznkj	65	40	.	.	.
cord-325328-3l3jznkj	66	1	These	these	DT
cord-325328-3l3jznkj	66	2	quartets	quartet	NNS
cord-325328-3l3jznkj	66	3	are	be	VBP
cord-325328-3l3jznkj	66	4	similar	similar	JJ
cord-325328-3l3jznkj	66	5	to	to	IN
cord-325328-3l3jznkj	66	6	those	those	DT
cord-325328-3l3jznkj	66	7	found	find	VBN
cord-325328-3l3jznkj	66	8	in	in	IN
cord-325328-3l3jznkj	66	9	the	the	DT
cord-325328-3l3jznkj	66	10	SARS	SARS	NNP
cord-325328-3l3jznkj	66	11	virus	virus	NN
cord-325328-3l3jznkj	66	12	s2	s2	NNP
cord-325328-3l3jznkj	66	13	m	m	NNP
cord-325328-3l3jznkj	66	14	element	element	NN
cord-325328-3l3jznkj	66	15	(	(	-LRB-
cord-325328-3l3jznkj	66	16	see	see	VB
cord-325328-3l3jznkj	66	17	above	above	RB
cord-325328-3l3jznkj	66	18	)	)	-RRB-
cord-325328-3l3jznkj	66	19	in	in	IN
cord-325328-3l3jznkj	66	20	that	that	IN
cord-325328-3l3jznkj	66	21	they	-PRON-	PRP
cord-325328-3l3jznkj	66	22	include	include	VBP
cord-325328-3l3jznkj	66	23	Watson	Watson	NNP
cord-325328-3l3jznkj	66	24	-	-	HYPH
cord-325328-3l3jznkj	66	25	Crick	Crick	NNP
cord-325328-3l3jznkj	66	26	pairs	pair	NNS
cord-325328-3l3jznkj	66	27	(	(	-LRB-
cord-325328-3l3jznkj	66	28	one	one	CD
cord-325328-3l3jznkj	66	29	base	base	NN
cord-325328-3l3jznkj	66	30	from	from	IN
cord-325328-3l3jznkj	66	31	each	each	DT
cord-325328-3l3jznkj	66	32	loop	loop	NN
cord-325328-3l3jznkj	66	33	)	)	-RRB-
cord-325328-3l3jznkj	66	34	,	,	,
cord-325328-3l3jznkj	66	35	but	but	CC
cord-325328-3l3jznkj	66	36	in	in	IN
cord-325328-3l3jznkj	66	37	this	this	DT
cord-325328-3l3jznkj	66	38	case	case	NN
cord-325328-3l3jznkj	66	39	they	-PRON-	PRP
cord-325328-3l3jznkj	66	40	interact	interact	VBP
cord-325328-3l3jznkj	66	41	with	with	IN
cord-325328-3l3jznkj	66	42	non	non	JJ
cord-325328-3l3jznkj	66	43	-	-	JJ
cord-325328-3l3jznkj	66	44	canonical	canonical	JJ
cord-325328-3l3jznkj	66	45	pairs	pair	NNS
cord-325328-3l3jznkj	66	46	(	(	-LRB-
cord-325328-3l3jznkj	66	47	formed	form	VBN
cord-325328-3l3jznkj	66	48	between	between	IN
cord-325328-3l3jznkj	66	49	loops	loop	NNS
cord-325328-3l3jznkj	66	50	)	)	-RRB-
cord-325328-3l3jznkj	66	51	in	in	IN
cord-325328-3l3jznkj	66	52	their	-PRON-	PRP$
cord-325328-3l3jznkj	66	53	minor	minor	JJ
cord-325328-3l3jznkj	66	54	groove	groove	NN
cord-325328-3l3jznkj	66	55	.	.	.
cord-325328-3l3jznkj	67	1	This	this	DT
cord-325328-3l3jznkj	67	2	tertiary	tertiary	JJ
cord-325328-3l3jznkj	67	3	interaction	interaction	NN
cord-325328-3l3jznkj	67	4	pulls	pull	VBZ
cord-325328-3l3jznkj	67	5	the	the	DT
cord-325328-3l3jznkj	67	6	loops	loop	NNS
cord-325328-3l3jznkj	67	7	together	together	RB
cord-325328-3l3jznkj	67	8	along	along	IN
cord-325328-3l3jznkj	67	9	with	with	IN
cord-325328-3l3jznkj	67	10	their	-PRON-	PRP$
cord-325328-3l3jznkj	67	11	attached	attach	VBN
cord-325328-3l3jznkj	67	12	stems	stem	NNS
cord-325328-3l3jznkj	67	13	.	.	.
cord-325328-3l3jznkj	68	1	The	the	DT
cord-325328-3l3jznkj	68	2	Moloney	Moloney	NNP
cord-325328-3l3jznkj	68	3	murine	murine	JJ
cord-325328-3l3jznkj	68	4	leukemia	leukemia	NN
cord-325328-3l3jznkj	68	5	virus	virus	NN
cord-325328-3l3jznkj	68	6	core	core	NN
cord-325328-3l3jznkj	68	7	encapsidation	encapsidation	NN
cord-325328-3l3jznkj	68	8	signal	signal	NN
cord-325328-3l3jznkj	68	9	Specificity	Specificity	NNP
cord-325328-3l3jznkj	68	10	of	of	IN
cord-325328-3l3jznkj	68	11	packaging	packaging	NN
cord-325328-3l3jznkj	68	12	of	of	IN
cord-325328-3l3jznkj	68	13	retroviral	retroviral	JJ
cord-325328-3l3jznkj	68	14	genomes	genome	NNS
cord-325328-3l3jznkj	68	15	is	be	VBZ
cord-325328-3l3jznkj	68	16	a	a	DT
cord-325328-3l3jznkj	68	17	result	result	NN
cord-325328-3l3jznkj	68	18	of	of	IN
cord-325328-3l3jznkj	68	19	interaction	interaction	NN
cord-325328-3l3jznkj	68	20	between	between	IN
cord-325328-3l3jznkj	68	21	nucleocapsid	nucleocapsid	NN
cord-325328-3l3jznkj	68	22	domains	domain	NNS
cord-325328-3l3jznkj	68	23	of	of	IN
cord-325328-3l3jznkj	68	24	the	the	DT
cord-325328-3l3jznkj	68	25	Gag	Gag	NNP
cord-325328-3l3jznkj	68	26	polyproteins	polyprotein	NNS
cord-325328-3l3jznkj	68	27	and	and	CC
cord-325328-3l3jznkj	68	28	the	the	DT
cord-325328-3l3jznkj	68	29	C	C	NNP
cord-325328-3l3jznkj	68	30	-	-	HYPH
cord-325328-3l3jznkj	68	31	site	site	NN
cord-325328-3l3jznkj	68	32	of	of	IN
cord-325328-3l3jznkj	68	33	the	the	DT
cord-325328-3l3jznkj	68	34	viral	viral	JJ
cord-325328-3l3jznkj	68	35	genome	genome	NN
cord-325328-3l3jznkj	68	36	.	.	.
cord-325328-3l3jznkj	69	1	Conserved	Conserved	NNP
cord-325328-3l3jznkj	69	2	RNA	RNA	NNP
cord-325328-3l3jznkj	69	3	secondary	secondary	JJ
cord-325328-3l3jznkj	69	4	structure	structure	NN
cord-325328-3l3jznkj	69	5	elements	element	NNS
cord-325328-3l3jznkj	69	6	within	within	IN
cord-325328-3l3jznkj	69	7	the	the	DT
cord-325328-3l3jznkj	69	8	Csite	Csite	NNP
cord-325328-3l3jznkj	69	9	have	have	VBP
cord-325328-3l3jznkj	69	10	been	be	VBN
cord-325328-3l3jznkj	69	11	identified	identify	VBN
cord-325328-3l3jznkj	69	12	for	for	IN
cord-325328-3l3jznkj	69	13	MMLV	MMLV	NNP
cord-325328-3l3jznkj	69	14	and	and	CC
cord-325328-3l3jznkj	69	15	other	other	JJ
cord-325328-3l3jznkj	69	16	retroviruses	retrovirus	NNS
cord-325328-3l3jznkj	69	17	.	.	.
cord-325328-3l3jznkj	70	1	In	in	IN
cord-325328-3l3jznkj	70	2	MMLV	MMLV	NNP
cord-325328-3l3jznkj	70	3	,	,	,
cord-325328-3l3jznkj	70	4	such	such	PDT
cord-325328-3l3jznkj	70	5	a	a	DT
cord-325328-3l3jznkj	70	6	region	region	NN
cord-325328-3l3jznkj	70	7	,	,	,
cord-325328-3l3jznkj	70	8	which	which	WDT
cord-325328-3l3jznkj	70	9	includes	include	VBZ
cord-325328-3l3jznkj	70	10	three	three	CD
cord-325328-3l3jznkj	70	11	stem	stem	NN
cord-325328-3l3jznkj	70	12	-	-	HYPH
cord-325328-3l3jznkj	70	13	loop	loop	NN
cord-325328-3l3jznkj	70	14	structures	structure	NNS
cord-325328-3l3jznkj	70	15	,	,	,
cord-325328-3l3jznkj	70	16	is	be	VBZ
cord-325328-3l3jznkj	70	17	highly	highly	RB
cord-325328-3l3jznkj	70	18	conserved	conserve	VBN
cord-325328-3l3jznkj	70	19	.	.	.
cord-325328-3l3jznkj	71	1	The	the	DT
cord-325328-3l3jznkj	71	2	sequences	sequence	NNS
cord-325328-3l3jznkj	71	3	of	of	IN
cord-325328-3l3jznkj	71	4	the	the	DT
cord-325328-3l3jznkj	71	5	three	three	CD
cord-325328-3l3jznkj	71	6	stem	stem	NN
cord-325328-3l3jznkj	71	7	-	-	HYPH
cord-325328-3l3jznkj	71	8	loops	loop	NNS
cord-325328-3l3jznkj	71	9	(	(	-LRB-
cord-325328-3l3jznkj	71	10	tetraloops	tetraloop	NNS
cord-325328-3l3jznkj	71	11	)	)	-RRB-
cord-325328-3l3jznkj	71	12	in	in	IN
cord-325328-3l3jznkj	71	13	this	this	DT
cord-325328-3l3jznkj	71	14	region	region	NN
cord-325328-3l3jznkj	71	15	were	be	VBD
cord-325328-3l3jznkj	71	16	changed	change	VBN
cord-325328-3l3jznkj	71	17	to	to	TO
cord-325328-3l3jznkj	71	18	prevent	prevent	VB
cord-325328-3l3jznkj	71	19	intermolecular	intermolecular	JJ
cord-325328-3l3jznkj	71	20	interaction	interaction	NN
cord-325328-3l3jznkj	71	21	and	and	CC
cord-325328-3l3jznkj	71	22	enhance	enhance	VB
cord-325328-3l3jznkj	71	23	crystallization	crystallization	NN
cord-325328-3l3jznkj	71	24	,	,	,
cord-325328-3l3jznkj	71	25	while	while	IN
cord-325328-3l3jznkj	71	26	retaining	retain	VBG
cord-325328-3l3jznkj	71	27	function	function	NN
cord-325328-3l3jznkj	71	28	.	.	.
cord-325328-3l3jznkj	72	1	The	the	DT
cord-325328-3l3jznkj	72	2	structure	structure	NN
cord-325328-3l3jznkj	72	3	of	of	IN
cord-325328-3l3jznkj	72	4	this	this	DT
cord-325328-3l3jznkj	72	5	engineered	engineer	VBN
cord-325328-3l3jznkj	72	6	,	,	,
cord-325328-3l3jznkj	72	7	functional	functional	NNP
cord-325328-3l3jznkj	72	8	RNA	RNA	NNP
cord-325328-3l3jznkj	72	9	,	,	,
cord-325328-3l3jznkj	72	10	which	which	WDT
cord-325328-3l3jznkj	72	11	corresponds	correspond	VBZ
cord-325328-3l3jznkj	72	12	to	to	IN
cord-325328-3l3jznkj	72	13	the	the	DT
cord-325328-3l3jznkj	72	14	core	core	NN
cord-325328-3l3jznkj	72	15	encapsidation	encapsidation	NN
cord-325328-3l3jznkj	72	16	signal	signal	NN
cord-325328-3l3jznkj	72	17	,	,	,
cord-325328-3l3jznkj	72	18	has	have	VBZ
cord-325328-3l3jznkj	72	19	been	be	VBN
cord-325328-3l3jznkj	72	20	determined	determine	VBN
cord-325328-3l3jznkj	72	21	by	by	IN
cord-325328-3l3jznkj	72	22	NMR	NMR	NNP
cord-325328-3l3jznkj	72	23	methods	method	NNS
cord-325328-3l3jznkj	72	24	[	[	-LRB-
cord-325328-3l3jznkj	72	25	2	2	CD
cord-325328-3l3jznkj	72	26	]	]	-RRB-
cord-325328-3l3jznkj	72	27	.	.	.
cord-325328-3l3jznkj	73	1	As	as	IN
cord-325328-3l3jznkj	73	2	seen	see	VBN
cord-325328-3l3jznkj	73	3	in	in	IN
cord-325328-3l3jznkj	73	4	Figure	Figure	NNP
cord-325328-3l3jznkj	73	5	4	4	CD
cord-325328-3l3jznkj	73	6	,	,	,
cord-325328-3l3jznkj	73	7	two	two	CD
cord-325328-3l3jznkj	73	8	of	of	IN
cord-325328-3l3jznkj	73	9	the	the	DT
cord-325328-3l3jznkj	73	10	stem	stem	NN
cord-325328-3l3jznkj	73	11	-	-	HYPH
cord-325328-3l3jznkj	73	12	loops	loop	NNS
cord-325328-3l3jznkj	73	13	form	form	VBP
cord-325328-3l3jznkj	73	14	a	a	DT
cord-325328-3l3jznkj	73	15	coaxial	coaxial	JJ
cord-325328-3l3jznkj	73	16	stack	stack	NN
cord-325328-3l3jznkj	73	17	connected	connect	VBN
cord-325328-3l3jznkj	73	18	to	to	IN
cord-325328-3l3jznkj	73	19	the	the	DT
cord-325328-3l3jznkj	73	20	third	third	JJ
cord-325328-3l3jznkj	73	21	stem	stem	NN
cord-325328-3l3jznkj	73	22	-	-	HYPH
cord-325328-3l3jznkj	73	23	loop	loop	NN
cord-325328-3l3jznkj	73	24	by	by	IN
cord-325328-3l3jznkj	73	25	a	a	DT
cord-325328-3l3jznkj	73	26	flexible	flexible	JJ
cord-325328-3l3jznkj	73	27	linker	linker	NN
cord-325328-3l3jznkj	73	28	.	.	.
cord-325328-3l3jznkj	74	1	In	in	IN
cord-325328-3l3jznkj	74	2	addition	addition	NN
cord-325328-3l3jznkj	74	3	to	to	IN
cord-325328-3l3jznkj	74	4	several	several	JJ
cord-325328-3l3jznkj	74	5	familiar	familiar	JJ
cord-325328-3l3jznkj	74	6	structural	structural	JJ
cord-325328-3l3jznkj	74	7	motifs	motif	NNS
cord-325328-3l3jznkj	74	8	,	,	,
cord-325328-3l3jznkj	74	9	a	a	DT
cord-325328-3l3jznkj	74	10	new	new	JJ
cord-325328-3l3jznkj	74	11	element	element	NN
cord-325328-3l3jznkj	74	12	,	,	,
cord-325328-3l3jznkj	74	13	termed	term	VBD
cord-325328-3l3jznkj	74	14	an	an	DT
cord-325328-3l3jznkj	74	15	'	'	``
cord-325328-3l3jznkj	74	16	A	a	DT
cord-325328-3l3jznkj	74	17	-	-	HYPH
cord-325328-3l3jznkj	74	18	minor	minor	JJ
cord-325328-3l3jznkj	74	19	kink	kink	NN
cord-325328-3l3jznkj	74	20	turn	turn	NN
cord-325328-3l3jznkj	74	21	'	'	''
cord-325328-3l3jznkj	74	22	,	,	,
cord-325328-3l3jznkj	74	23	was	be	VBD
cord-325328-3l3jznkj	74	24	observed	observe	VBN
cord-325328-3l3jznkj	74	25	.	.	.
cord-325328-3l3jznkj	75	1	This	this	DT
cord-325328-3l3jznkj	75	2	structural	structural	JJ
cord-325328-3l3jznkj	75	3	feature	feature	NN
cord-325328-3l3jznkj	75	4	,	,	,
cord-325328-3l3jznkj	75	5	with	with	IN
cord-325328-3l3jznkj	75	6	similarities	similarity	NNS
cord-325328-3l3jznkj	75	7	to	to	IN
cord-325328-3l3jznkj	75	8	both	both	CC
cord-325328-3l3jznkj	75	9	the	the	DT
cord-325328-3l3jznkj	75	10	A	A	NNP
cord-325328-3l3jznkj	75	11	-	-	HYPH
cord-325328-3l3jznkj	75	12	minor	minor	JJ
cord-325328-3l3jznkj	75	13	motif	motif	NN
cord-325328-3l3jznkj	75	14	and	and	CC
cord-325328-3l3jznkj	75	15	a	a	DT
cord-325328-3l3jznkj	75	16	kink	kink	NN
cord-325328-3l3jznkj	75	17	turn	turn	NN
cord-325328-3l3jznkj	75	18	,	,	,
cord-325328-3l3jznkj	75	19	is	be	VBZ
cord-325328-3l3jznkj	75	20	formed	form	VBN
cord-325328-3l3jznkj	75	21	by	by	IN
cord-325328-3l3jznkj	75	22	the	the	DT
cord-325328-3l3jznkj	75	23	interaction	interaction	NN
cord-325328-3l3jznkj	75	24	of	of	IN
cord-325328-3l3jznkj	75	25	an	an	DT
cord-325328-3l3jznkj	75	26	extruded	extrude	VBN
cord-325328-3l3jznkj	75	27	uridine	uridine	NN
cord-325328-3l3jznkj	75	28	and	and	CC
cord-325328-3l3jznkj	75	29	a	a	DT
cord-325328-3l3jznkj	75	30	GGAA	GGAA	NNP
cord-325328-3l3jznkj	75	31	bulge	bulge	NN
cord-325328-3l3jznkj	75	32	.	.	.
cord-325328-3l3jznkj	76	1	In	in	IN
cord-325328-3l3jznkj	76	2	this	this	DT
cord-325328-3l3jznkj	76	3	element	element	NN
cord-325328-3l3jznkj	76	4	,	,	,
cord-325328-3l3jznkj	76	5	two	two	CD
cord-325328-3l3jznkj	76	6	unpaired	unpaired	JJ
cord-325328-3l3jznkj	76	7	adenosines	adenosine	NNS
cord-325328-3l3jznkj	76	8	pack	pack	NN
cord-325328-3l3jznkj	76	9	in	in	IN
cord-325328-3l3jznkj	76	10	the	the	DT
cord-325328-3l3jznkj	76	11	minor	minor	JJ
cord-325328-3l3jznkj	76	12	groove	groove	NN
cord-325328-3l3jznkj	76	13	of	of	IN
cord-325328-3l3jznkj	76	14	a	a	DT
cord-325328-3l3jznkj	76	15	neighboring	neighboring	NN
cord-325328-3l3jznkj	76	16	stem	stem	NN
cord-325328-3l3jznkj	76	17	,	,	,
cord-325328-3l3jznkj	76	18	inducing	induce	VBG
cord-325328-3l3jznkj	76	19	a	a	DT
cord-325328-3l3jznkj	76	20	kink	kink	NN
cord-325328-3l3jznkj	76	21	in	in	IN
cord-325328-3l3jznkj	76	22	the	the	DT
cord-325328-3l3jznkj	76	23	helix	helix	NN
cord-325328-3l3jznkj	76	24	.	.	.
cord-325328-3l3jznkj	77	1	More	More	JJR
cord-325328-3l3jznkj	77	2	structural	structural	JJ
cord-325328-3l3jznkj	77	3	examples	example	NNS
cord-325328-3l3jznkj	77	4	are	be	VBP
cord-325328-3l3jznkj	77	5	needed	need	VBN
cord-325328-3l3jznkj	77	6	to	to	TO
cord-325328-3l3jznkj	77	7	determine	determine	VB
cord-325328-3l3jznkj	77	8	whether	whether	IN
cord-325328-3l3jznkj	77	9	this	this	DT
cord-325328-3l3jznkj	77	10	is	be	VBZ
cord-325328-3l3jznkj	77	11	a	a	DT
cord-325328-3l3jznkj	77	12	recurring	recur	VBG
cord-325328-3l3jznkj	77	13	RNA	RNA	NNP
cord-325328-3l3jznkj	77	14	structural	structural	JJ
cord-325328-3l3jznkj	77	15	motif	motif	NN
cord-325328-3l3jznkj	77	16	or	or	CC
cord-325328-3l3jznkj	77	17	unique	unique	JJ
cord-325328-3l3jznkj	77	18	to	to	IN
cord-325328-3l3jznkj	77	19	this	this	DT
cord-325328-3l3jznkj	77	20	structure	structure	NN
cord-325328-3l3jznkj	77	21	.	.	.
cord-325328-3l3jznkj	78	1	Considering	consider	VBG
cord-325328-3l3jznkj	78	2	the	the	DT
cord-325328-3l3jznkj	78	3	large	large	JJ
cord-325328-3l3jznkj	78	4	fraction	fraction	NN
cord-325328-3l3jznkj	78	5	of	of	IN
cord-325328-3l3jznkj	78	6	RNA	RNA	NNP
cord-325328-3l3jznkj	78	7	that	that	WDT
cord-325328-3l3jznkj	78	8	can	can	MD
cord-325328-3l3jznkj	78	9	be	be	VB
cord-325328-3l3jznkj	78	10	attributed	attribute	VBN
cord-325328-3l3jznkj	78	11	to	to	IN
cord-325328-3l3jznkj	78	12	secondary	secondary	JJ
cord-325328-3l3jznkj	78	13	and	and	CC
cord-325328-3l3jznkj	78	14	tertiary	tertiary	JJ
cord-325328-3l3jznkj	78	15	structure	structure	NN
cord-325328-3l3jznkj	78	16	motifs	motif	NNS
cord-325328-3l3jznkj	78	17	,	,	,
cord-325328-3l3jznkj	78	18	the	the	DT
cord-325328-3l3jznkj	78	19	prediction	prediction	NN
cord-325328-3l3jznkj	78	20	of	of	IN
cord-325328-3l3jznkj	78	21	these	these	DT
cord-325328-3l3jznkj	78	22	motifs	motif	NNS
cord-325328-3l3jznkj	78	23	from	from	IN
cord-325328-3l3jznkj	78	24	sequence	sequence	NN
cord-325328-3l3jznkj	78	25	would	would	MD
cord-325328-3l3jznkj	78	26	be	be	VB
cord-325328-3l3jznkj	78	27	a	a	DT
cord-325328-3l3jznkj	78	28	large	large	JJ
cord-325328-3l3jznkj	78	29	step	step	NN
cord-325328-3l3jznkj	78	30	toward	toward	IN
cord-325328-3l3jznkj	78	31	the	the	DT
cord-325328-3l3jznkj	78	32	prediction	prediction	NN
cord-325328-3l3jznkj	78	33	of	of	IN
cord-325328-3l3jznkj	78	34	RNA	RNA	NNP
cord-325328-3l3jznkj	78	35	three	three	CD
cord-325328-3l3jznkj	78	36	-	-	HYPH
cord-325328-3l3jznkj	78	37	dimensional	dimensional	JJ
cord-325328-3l3jznkj	78	38	structure	structure	NN
cord-325328-3l3jznkj	78	39	.	.	.
cord-325328-3l3jznkj	79	1	Currently	currently	RB
cord-325328-3l3jznkj	79	2	,	,	,
cord-325328-3l3jznkj	79	3	the	the	DT
cord-325328-3l3jznkj	79	4	most	most	RBS
cord-325328-3l3jznkj	79	5	successful	successful	JJ
cord-325328-3l3jznkj	79	6	approach	approach	NN
cord-325328-3l3jznkj	79	7	to	to	IN
cord-325328-3l3jznkj	79	8	predicting	predict	VBG
cord-325328-3l3jznkj	79	9	RNA	RNA	NNP
cord-325328-3l3jznkj	79	10	motifs	motif	NNS
cord-325328-3l3jznkj	79	11	begins	begin	VBZ
cord-325328-3l3jznkj	79	12	by	by	IN
cord-325328-3l3jznkj	79	13	predicting	predict	VBG
cord-325328-3l3jznkj	79	14	the	the	DT
cord-325328-3l3jznkj	79	15	secondary	secondary	JJ
cord-325328-3l3jznkj	79	16	structure	structure	NN
cord-325328-3l3jznkj	79	17	by	by	IN
cord-325328-3l3jznkj	79	18	means	mean	NNS
cord-325328-3l3jznkj	79	19	of	of	IN
cord-325328-3l3jznkj	79	20	either	either	DT
cord-325328-3l3jznkj	79	21	energy	energy	NN
cord-325328-3l3jznkj	79	22	minimization	minimization	NN
cord-325328-3l3jznkj	79	23	using	use	VBG
cord-325328-3l3jznkj	79	24	nearest	near	JJS
cord-325328-3l3jznkj	79	25	neighbor	neighbor	NN
cord-325328-3l3jznkj	79	26	thermodynamic	thermodynamic	JJ
cord-325328-3l3jznkj	79	27	rules	rule	NNS
cord-325328-3l3jznkj	79	28	,	,	,
cord-325328-3l3jznkj	79	29	as	as	IN
cord-325328-3l3jznkj	79	30	implemented	implement	VBN
cord-325328-3l3jznkj	79	31	in	in	IN
cord-325328-3l3jznkj	79	32	MFOLD	MFOLD	NNP
cord-325328-3l3jznkj	79	33	[	[	-LRB-
cord-325328-3l3jznkj	79	34	40	40	CD
cord-325328-3l3jznkj	79	35	]	]	-RRB-
cord-325328-3l3jznkj	79	36	and	and	CC
cord-325328-3l3jznkj	79	37	the	the	DT
cord-325328-3l3jznkj	79	38	Vienna	Vienna	NNP
cord-325328-3l3jznkj	79	39	RNA	RNA	NNP
cord-325328-3l3jznkj	79	40	package	package	NN
cord-325328-3l3jznkj	79	41	[	[	-LRB-
cord-325328-3l3jznkj	79	42	41	41	CD
cord-325328-3l3jznkj	79	43	]	]	-RRB-
cord-325328-3l3jznkj	79	44	,	,	,
cord-325328-3l3jznkj	79	45	or	or	CC
cord-325328-3l3jznkj	79	46	covariation	covariation	NN
cord-325328-3l3jznkj	79	47	analysis	analysis	NN
cord-325328-3l3jznkj	79	48	,	,	,
cord-325328-3l3jznkj	79	49	or	or	CC
cord-325328-3l3jznkj	79	50	a	a	DT
cord-325328-3l3jznkj	79	51	combination	combination	NN
cord-325328-3l3jznkj	79	52	of	of	IN
cord-325328-3l3jznkj	79	53	both	both	DT
cord-325328-3l3jznkj	79	54	[	[	-LRB-
cord-325328-3l3jznkj	79	55	42	42	CD
cord-325328-3l3jznkj	79	56	]	]	-RRB-
cord-325328-3l3jznkj	79	57	.	.	.
cord-325328-3l3jznkj	80	1	Next	next	RB
cord-325328-3l3jznkj	80	2	,	,	,
cord-325328-3l3jznkj	80	3	potential	potential	JJ
cord-325328-3l3jznkj	80	4	motifs	motif	NNS
cord-325328-3l3jznkj	80	5	are	be	VBP
cord-325328-3l3jznkj	80	6	identified	identify	VBN
cord-325328-3l3jznkj	80	7	in	in	IN
cord-325328-3l3jznkj	80	8	the	the	DT
cord-325328-3l3jznkj	80	9	predicted	predict	VBN
cord-325328-3l3jznkj	80	10	RNA	RNA	NNP
cord-325328-3l3jznkj	80	11	structure	structure	NN
cord-325328-3l3jznkj	80	12	Holbrook	Holbrook	NNP
cord-325328-3l3jznkj	80	13	305	305	CD
cord-325328-3l3jznkj	81	1	A	a	DT
cord-325328-3l3jznkj	81	2	Watson	Watson	NNP
cord-325328-3l3jznkj	81	3	-	-	HYPH
cord-325328-3l3jznkj	81	4	Crick	Crick	NNP
cord-325328-3l3jznkj	81	5	base	base	NN
cord-325328-3l3jznkj	81	6	quartet	quartet	NN
cord-325328-3l3jznkj	81	7	found	find	VBD
cord-325328-3l3jznkj	81	8	in	in	IN
cord-325328-3l3jznkj	81	9	a	a	DT
cord-325328-3l3jznkj	81	10	highly	highly	RB
cord-325328-3l3jznkj	81	11	conserved	conserve	VBN
cord-325328-3l3jznkj	81	12	region	region	NN
cord-325328-3l3jznkj	81	13	of	of	IN
cord-325328-3l3jznkj	81	14	the	the	DT
cord-325328-3l3jznkj	81	15	SARS	SARS	NNP
cord-325328-3l3jznkj	81	16	virus	virus	NN
cord-325328-3l3jznkj	81	17	genome	genome	NN
cord-325328-3l3jznkj	81	18	.	.	.
cord-325328-3l3jznkj	82	1	The	the	DT
cord-325328-3l3jznkj	82	2	quartet	quartet	NN
cord-325328-3l3jznkj	82	3	is	be	VBZ
cord-325328-3l3jznkj	82	4	shown	show	VBN
cord-325328-3l3jznkj	82	5	in	in	IN
cord-325328-3l3jznkj	82	6	orange	orange	NNP
cord-325328-3l3jznkj	82	7	,	,	,
cord-325328-3l3jznkj	82	8	a	a	DT
cord-325328-3l3jznkj	82	9	GNRA	GNRA	NNP
cord-325328-3l3jznkj	82	10	-	-	HYPH
cord-325328-3l3jznkj	82	11	like	like	JJ
cord-325328-3l3jznkj	82	12	pentaloop	pentaloop	NN
cord-325328-3l3jznkj	82	13	with	with	IN
cord-325328-3l3jznkj	82	14	a	a	DT
cord-325328-3l3jznkj	82	15	closing	close	VBG
cord-325328-3l3jznkj	82	16	base	base	NN
cord-325328-3l3jznkj	82	17	pair	pair	NN
cord-325328-3l3jznkj	82	18	is	be	VBZ
cord-325328-3l3jznkj	82	19	in	in	IN
cord-325328-3l3jznkj	82	20	green	green	JJ
cord-325328-3l3jznkj	82	21	,	,	,
cord-325328-3l3jznkj	82	22	a	a	DT
cord-325328-3l3jznkj	82	23	base	base	NN
cord-325328-3l3jznkj	82	24	pair	pair	NN
cord-325328-3l3jznkj	82	25	from	from	IN
cord-325328-3l3jznkj	82	26	a	a	DT
cord-325328-3l3jznkj	82	27	second	second	JJ
cord-325328-3l3jznkj	82	28	helix	helix	NN
cord-325328-3l3jznkj	82	29	at	at	IN
cord-325328-3l3jznkj	82	30	a	a	DT
cord-325328-3l3jznkj	82	31	sharp	sharp	JJ
cord-325328-3l3jznkj	82	32	angle	angle	NN
cord-325328-3l3jznkj	82	33	to	to	IN
cord-325328-3l3jznkj	82	34	the	the	DT
cord-325328-3l3jznkj	82	35	tetraloop	tetraloop	NN
cord-325328-3l3jznkj	82	36	is	be	VBZ
cord-325328-3l3jznkj	82	37	shown	show	VBN
cord-325328-3l3jznkj	82	38	in	in	IN
cord-325328-3l3jznkj	82	39	magenta	magenta	NN
cord-325328-3l3jznkj	82	40	and	and	CC
cord-325328-3l3jznkj	82	41	a	a	DT
cord-325328-3l3jznkj	82	42	dinucleotide	dinucleotide	NN
cord-325328-3l3jznkj	82	43	linker	linker	NN
cord-325328-3l3jznkj	82	44	between	between	IN
cord-325328-3l3jznkj	82	45	bases	basis	NNS
cord-325328-3l3jznkj	82	46	of	of	IN
cord-325328-3l3jznkj	82	47	the	the	DT
cord-325328-3l3jznkj	82	48	quartet	quartet	NN
cord-325328-3l3jznkj	82	49	is	be	VBZ
cord-325328-3l3jznkj	82	50	in	in	IN
cord-325328-3l3jznkj	82	51	yellow	yellow	JJ
cord-325328-3l3jznkj	82	52	.	.	.
cord-325328-3l3jznkj	83	1	secondary	secondary	JJ
cord-325328-3l3jznkj	83	2	structure	structure	NN
cord-325328-3l3jznkj	83	3	loop	loop	NN
cord-325328-3l3jznkj	83	4	regions	region	NNS
cord-325328-3l3jznkj	83	5	using	use	VBG
cord-325328-3l3jznkj	83	6	sizes	size	NNS
cord-325328-3l3jznkj	83	7	and	and	CC
cord-325328-3l3jznkj	83	8	sequences	sequence	NNS
cord-325328-3l3jznkj	83	9	known	know	VBN
cord-325328-3l3jznkj	83	10	to	to	TO
cord-325328-3l3jznkj	83	11	be	be	VB
cord-325328-3l3jznkj	83	12	compatible	compatible	JJ
cord-325328-3l3jznkj	83	13	with	with	IN
cord-325328-3l3jznkj	83	14	the	the	DT
cord-325328-3l3jznkj	83	15	motifs	motif	NNS
cord-325328-3l3jznkj	83	16	.	.	.
cord-325328-3l3jznkj	84	1	The	the	DT
cord-325328-3l3jznkj	84	2	sequence	sequence	NN
cord-325328-3l3jznkj	84	3	profiles	profile	NNS
cord-325328-3l3jznkj	84	4	of	of	IN
cord-325328-3l3jznkj	84	5	homologous	homologous	JJ
cord-325328-3l3jznkj	84	6	aligned	align	VBN
cord-325328-3l3jznkj	84	7	RNAs	rna	NNS
cord-325328-3l3jznkj	84	8	are	be	VBP
cord-325328-3l3jznkj	84	9	then	then	RB
cord-325328-3l3jznkj	84	10	checked	check	VBN
cord-325328-3l3jznkj	84	11	against	against	IN
cord-325328-3l3jznkj	84	12	these	these	DT
cord-325328-3l3jznkj	84	13	potential	potential	JJ
cord-325328-3l3jznkj	84	14	motifs	motif	NNS
cord-325328-3l3jznkj	84	15	to	to	TO
cord-325328-3l3jznkj	84	16	confirm	confirm	VB
cord-325328-3l3jznkj	84	17	compatibility	compatibility	NN
cord-325328-3l3jznkj	84	18	.	.	.
cord-325328-3l3jznkj	85	1	This	this	DT
cord-325328-3l3jznkj	85	2	approach	approach	NN
cord-325328-3l3jznkj	85	3	was	be	VBD
cord-325328-3l3jznkj	85	4	used	use	VBN
cord-325328-3l3jznkj	85	5	successfully	successfully	RB
cord-325328-3l3jznkj	85	6	to	to	TO
cord-325328-3l3jznkj	85	7	identify	identify	VB
cord-325328-3l3jznkj	85	8	sarcin	sarcin	NNS
cord-325328-3l3jznkj	85	9	-	-	HYPH
cord-325328-3l3jznkj	85	10	ricin	ricin	NN
cord-325328-3l3jznkj	85	11	loops	loop	NNS
cord-325328-3l3jznkj	85	12	and	and	CC
cord-325328-3l3jznkj	85	13	loop	loop	NN
cord-325328-3l3jznkj	85	14	E	e	NN
cord-325328-3l3jznkj	85	15	motifs	motif	NNS
cord-325328-3l3jznkj	85	16	in	in	IN
cord-325328-3l3jznkj	85	17	rRNA	rrna	NN
cord-325328-3l3jznkj	85	18	[	[	-LRB-
cord-325328-3l3jznkj	85	19	34	34	CD
cord-325328-3l3jznkj	85	20	]	]	-RRB-
cord-325328-3l3jznkj	85	21	.	.	.
cord-325328-3l3jznkj	86	1	The	the	DT
cord-325328-3l3jznkj	86	2	ribose	ribose	NN
cord-325328-3l3jznkj	86	3	zipper	zipper	NN
cord-325328-3l3jznkj	86	4	tertiary	tertiary	JJ
cord-325328-3l3jznkj	86	5	structure	structure	NN
cord-325328-3l3jznkj	86	6	motif	motif	NN
cord-325328-3l3jznkj	86	7	has	have	VBZ
cord-325328-3l3jznkj	86	8	been	be	VBN
cord-325328-3l3jznkj	86	9	characterized	characterize	VBN
cord-325328-3l3jznkj	86	10	[	[	-LRB-
cord-325328-3l3jznkj	86	11	43	43	CD
cord-325328-3l3jznkj	86	12	]	]	-RRB-
cord-325328-3l3jznkj	86	13	in	in	IN
cord-325328-3l3jznkj	86	14	terms	term	NNS
cord-325328-3l3jznkj	86	15	of	of	IN
cord-325328-3l3jznkj	86	16	sequence	sequence	NN
cord-325328-3l3jznkj	86	17	and	and	CC
cord-325328-3l3jznkj	86	18	secondary	secondary	JJ
cord-325328-3l3jznkj	86	19	structure	structure	NN
cord-325328-3l3jznkj	86	20	based	base	VBN
cord-325328-3l3jznkj	86	21	on	on	IN
cord-325328-3l3jznkj	86	22	97	97	CD
cord-325328-3l3jznkj	86	23	instances	instance	NNS
cord-325328-3l3jznkj	86	24	observed	observe	VBN
cord-325328-3l3jznkj	86	25	in	in	IN
cord-325328-3l3jznkj	86	26	rRNA	rRNA	NNP
cord-325328-3l3jznkj	86	27	.	.	.
cord-325328-3l3jznkj	87	1	The	the	DT
cord-325328-3l3jznkj	87	2	most	most	RBS
cord-325328-3l3jznkj	87	3	common	common	JJ
cord-325328-3l3jznkj	87	4	,	,	,
cord-325328-3l3jznkj	87	5	or	or	CC
cord-325328-3l3jznkj	87	6	canonical	canonical	JJ
cord-325328-3l3jznkj	87	7	,	,	,
cord-325328-3l3jznkj	87	8	type	type	NN
cord-325328-3l3jznkj	87	9	of	of	IN
cord-325328-3l3jznkj	87	10	ribose	ribose	NN
cord-325328-3l3jznkj	87	11	zipper	zipper	NN
cord-325328-3l3jznkj	87	12	shows	show	VBZ
cord-325328-3l3jznkj	87	13	a	a	DT
cord-325328-3l3jznkj	87	14	strong	strong	JJ
cord-325328-3l3jznkj	87	15	sequence	sequence	NN
cord-325328-3l3jznkj	87	16	bias	bias	NN
cord-325328-3l3jznkj	87	17	,	,	,
cord-325328-3l3jznkj	87	18	and	and	CC
cord-325328-3l3jznkj	87	19	is	be	VBZ
cord-325328-3l3jznkj	87	20	found	find	VBN
cord-325328-3l3jznkj	87	21	to	to	TO
cord-325328-3l3jznkj	87	22	link	link	VB
cord-325328-3l3jznkj	87	23	stem	stem	NN
cord-325328-3l3jznkj	87	24	or	or	CC
cord-325328-3l3jznkj	87	25	stem	stem	NN
cord-325328-3l3jznkj	87	26	-	-	HYPH
cord-325328-3l3jznkj	87	27	like	like	JJ
cord-325328-3l3jznkj	87	28	regions	region	NNS
cord-325328-3l3jznkj	87	29	with	with	IN
cord-325328-3l3jznkj	87	30	loop	loop	NN
cord-325328-3l3jznkj	87	31	regions	region	NNS
cord-325328-3l3jznkj	87	32	.	.	.
cord-325328-3l3jznkj	88	1	The	the	DT
cord-325328-3l3jznkj	88	2	residues	residue	NNS
cord-325328-3l3jznkj	88	3	involved	involve	VBN
cord-325328-3l3jznkj	88	4	in	in	IN
cord-325328-3l3jznkj	88	5	ribose	ribose	NN
cord-325328-3l3jznkj	88	6	zippers	zipper	NNS
cord-325328-3l3jznkj	88	7	were	be	VBD
cord-325328-3l3jznkj	88	8	also	also	RB
cord-325328-3l3jznkj	88	9	found	find	VBN
cord-325328-3l3jznkj	88	10	to	to	TO
cord-325328-3l3jznkj	88	11	be	be	VB
cord-325328-3l3jznkj	88	12	phylogenetically	phylogenetically	RB
cord-325328-3l3jznkj	88	13	conserved	conserve	VBN
cord-325328-3l3jznkj	88	14	and	and	CC
cord-325328-3l3jznkj	88	15	to	to	TO
cord-325328-3l3jznkj	88	16	demonstrate	demonstrate	VB
cord-325328-3l3jznkj	88	17	covariation	covariation	NN
cord-325328-3l3jznkj	88	18	patterns	pattern	NNS
cord-325328-3l3jznkj	88	19	.	.	.
cord-325328-3l3jznkj	89	1	Thus	thus	RB
cord-325328-3l3jznkj	89	2	,	,	,
cord-325328-3l3jznkj	89	3	the	the	DT
cord-325328-3l3jznkj	89	4	application	application	NN
cord-325328-3l3jznkj	89	5	of	of	IN
cord-325328-3l3jznkj	89	6	sequence	sequence	NN
cord-325328-3l3jznkj	89	7	and	and	CC
cord-325328-3l3jznkj	89	8	structure	structure	NN
cord-325328-3l3jznkj	89	9	conservation	conservation	NN
cord-325328-3l3jznkj	89	10	analysis	analysis	NN
cord-325328-3l3jznkj	89	11	,	,	,
cord-325328-3l3jznkj	89	12	as	as	IN
cord-325328-3l3jznkj	89	13	used	use	VBN
cord-325328-3l3jznkj	89	14	for	for	IN
cord-325328-3l3jznkj	89	15	the	the	DT
cord-325328-3l3jznkj	89	16	prediction	prediction	NN
cord-325328-3l3jznkj	89	17	of	of	IN
cord-325328-3l3jznkj	89	18	secondary	secondary	JJ
cord-325328-3l3jznkj	89	19	structure	structure	NN
cord-325328-3l3jznkj	89	20	motifs	motif	NNS
cord-325328-3l3jznkj	89	21	,	,	,
cord-325328-3l3jznkj	89	22	is	be	VBZ
cord-325328-3l3jznkj	89	23	also	also	RB
cord-325328-3l3jznkj	89	24	a	a	DT
cord-325328-3l3jznkj	89	25	powerful	powerful	JJ
cord-325328-3l3jznkj	89	26	tool	tool	NN
cord-325328-3l3jznkj	89	27	for	for	IN
cord-325328-3l3jznkj	89	28	predicting	predict	VBG
cord-325328-3l3jznkj	89	29	this	this	DT
cord-325328-3l3jznkj	89	30	tertiary	tertiary	JJ
cord-325328-3l3jznkj	89	31	interaction	interaction	NN
cord-325328-3l3jznkj	89	32	motif	motif	NN
cord-325328-3l3jznkj	89	33	.	.	.
cord-325328-3l3jznkj	90	1	Further	further	JJ
cord-325328-3l3jznkj	90	2	studies	study	NNS
cord-325328-3l3jznkj	90	3	of	of	IN
cord-325328-3l3jznkj	90	4	the	the	DT
cord-325328-3l3jznkj	90	5	application	application	NN
cord-325328-3l3jznkj	90	6	of	of	IN
cord-325328-3l3jznkj	90	7	this	this	DT
cord-325328-3l3jznkj	90	8	approach	approach	NN
cord-325328-3l3jznkj	90	9	to	to	IN
cord-325328-3l3jznkj	90	10	the	the	DT
cord-325328-3l3jznkj	90	11	prediction	prediction	NN
cord-325328-3l3jznkj	90	12	of	of	IN
cord-325328-3l3jznkj	90	13	other	other	JJ
cord-325328-3l3jznkj	90	14	secondary	secondary	JJ
cord-325328-3l3jznkj	90	15	and	and	CC
cord-325328-3l3jznkj	90	16	tertiary	tertiary	JJ
cord-325328-3l3jznkj	90	17	structure	structure	NN
cord-325328-3l3jznkj	90	18	motifs	motif	NNS
cord-325328-3l3jznkj	90	19	are	be	VBP
cord-325328-3l3jznkj	90	20	necessary	necessary	JJ
cord-325328-3l3jznkj	90	21	to	to	TO
cord-325328-3l3jznkj	90	22	confirm	confirm	VB
cord-325328-3l3jznkj	90	23	and	and	CC
cord-325328-3l3jznkj	90	24	make	make	VB
cord-325328-3l3jznkj	90	25	this	this	DT
cord-325328-3l3jznkj	90	26	approach	approach	NN
cord-325328-3l3jznkj	90	27	standard	standard	NN
cord-325328-3l3jznkj	90	28	.	.	.
cord-325328-3l3jznkj	91	1	The	the	DT
cord-325328-3l3jznkj	91	2	focus	focus	NN
cord-325328-3l3jznkj	91	3	of	of	IN
cord-325328-3l3jznkj	91	4	RNA	RNA	NNP
cord-325328-3l3jznkj	91	5	structure	structure	NN
cord-325328-3l3jznkj	91	6	determination	determination	NN
cord-325328-3l3jznkj	91	7	has	have	VBZ
cord-325328-3l3jznkj	91	8	switched	switch	VBN
cord-325328-3l3jznkj	91	9	from	from	IN
cord-325328-3l3jznkj	91	10	small	small	JJ
cord-325328-3l3jznkj	91	11	model	model	NN
cord-325328-3l3jznkj	91	12	structures	structure	NNS
cord-325328-3l3jznkj	91	13	and	and	CC
cord-325328-3l3jznkj	91	14	molecular	molecular	JJ
cord-325328-3l3jznkj	91	15	fragments	fragment	NNS
cord-325328-3l3jznkj	91	16	to	to	IN
cord-325328-3l3jznkj	91	17	large	large	JJ
cord-325328-3l3jznkj	91	18	,	,	,
cord-325328-3l3jznkj	91	19	naturally	naturally	RB
cord-325328-3l3jznkj	91	20	occurring	occur	VBG
cord-325328-3l3jznkj	91	21	biological	biological	JJ
cord-325328-3l3jznkj	91	22	RNAs	rna	NNS
cord-325328-3l3jznkj	91	23	,	,	,
cord-325328-3l3jznkj	91	24	some	some	DT
cord-325328-3l3jznkj	91	25	in	in	IN
cord-325328-3l3jznkj	91	26	protein	protein	NN
cord-325328-3l3jznkj	91	27	complexes	complex	NNS
cord-325328-3l3jznkj	91	28	and	and	CC
cord-325328-3l3jznkj	91	29	some	some	DT
cord-325328-3l3jznkj	91	30	engineered	engineer	VBN
cord-325328-3l3jznkj	91	31	to	to	TO
cord-325328-3l3jznkj	91	32	enhance	enhance	VB
cord-325328-3l3jznkj	91	33	crystallization	crystallization	NN
cord-325328-3l3jznkj	91	34	.	.	.
cord-325328-3l3jznkj	92	1	These	these	DT
cord-325328-3l3jznkj	92	2	larger	large	JJR
cord-325328-3l3jznkj	92	3	,	,	,
cord-325328-3l3jznkj	92	4	more	more	RBR
cord-325328-3l3jznkj	92	5	biological	biological	JJ
cord-325328-3l3jznkj	92	6	structures	structure	NNS
cord-325328-3l3jznkj	92	7	provide	provide	VBP
cord-325328-3l3jznkj	92	8	a	a	DT
cord-325328-3l3jznkj	92	9	diverse	diverse	JJ
cord-325328-3l3jznkj	92	10	picture	picture	NN
cord-325328-3l3jznkj	92	11	,	,	,
cord-325328-3l3jznkj	92	12	and	and	CC
cord-325328-3l3jznkj	92	13	represent	represent	VB
cord-325328-3l3jznkj	92	14	a	a	DT
cord-325328-3l3jznkj	92	15	more	more	RBR
cord-325328-3l3jznkj	92	16	uniform	uniform	JJ
cord-325328-3l3jznkj	92	17	sampling	sampling	NN
cord-325328-3l3jznkj	92	18	of	of	IN
cord-325328-3l3jznkj	92	19	the	the	DT
cord-325328-3l3jznkj	92	20	secondary	secondary	JJ
cord-325328-3l3jznkj	92	21	and	and	CC
cord-325328-3l3jznkj	92	22	tertiary	tertiary	JJ
cord-325328-3l3jznkj	92	23	structure	structure	NN
cord-325328-3l3jznkj	92	24	motifs	motif	NNS
cord-325328-3l3jznkj	92	25	available	available	JJ
cord-325328-3l3jznkj	92	26	to	to	IN
cord-325328-3l3jznkj	92	27	RNA	RNA	NNP
cord-325328-3l3jznkj	92	28	.	.	.
cord-325328-3l3jznkj	93	1	Detailed	detailed	JJ
cord-325328-3l3jznkj	93	2	examination	examination	NN
cord-325328-3l3jznkj	93	3	of	of	IN
cord-325328-3l3jznkj	93	4	recently	recently	RB
cord-325328-3l3jznkj	93	5	determined	determine	VBN
cord-325328-3l3jznkj	93	6	biological	biological	JJ
cord-325328-3l3jznkj	93	7	RNAs	rna	NNS
cord-325328-3l3jznkj	93	8	has	have	VBZ
cord-325328-3l3jznkj	93	9	revealed	reveal	VBN
cord-325328-3l3jznkj	93	10	many	many	JJ
cord-325328-3l3jznkj	93	11	new	new	JJ
cord-325328-3l3jznkj	93	12	structural	structural	JJ
cord-325328-3l3jznkj	93	13	elements	element	NNS
cord-325328-3l3jznkj	93	14	,	,	,
cord-325328-3l3jznkj	93	15	in	in	IN
cord-325328-3l3jznkj	93	16	addition	addition	NN
cord-325328-3l3jznkj	93	17	to	to	IN
cord-325328-3l3jznkj	93	18	finding	find	VBG
cord-325328-3l3jznkj	93	19	repeated	repeat	VBN
cord-325328-3l3jznkj	93	20	examples	example	NNS
cord-325328-3l3jznkj	93	21	of	of	IN
cord-325328-3l3jznkj	93	22	previously	previously	RB
cord-325328-3l3jznkj	93	23	characterized	characterize	VBN
cord-325328-3l3jznkj	93	24	motifs	motif	NNS
cord-325328-3l3jznkj	93	25	.	.	.
cord-325328-3l3jznkj	94	1	In	in	IN
cord-325328-3l3jznkj	94	2	fact	fact	NN
cord-325328-3l3jznkj	94	3	,	,	,
cord-325328-3l3jznkj	94	4	by	by	IN
cord-325328-3l3jznkj	94	5	far	far	RB
cord-325328-3l3jznkj	94	6	the	the	DT
cord-325328-3l3jznkj	94	7	greatest	great	JJS
cord-325328-3l3jznkj	94	8	proportion	proportion	NN
cord-325328-3l3jznkj	94	9	of	of	IN
cord-325328-3l3jznkj	94	10	RNA	RNA	NNP
cord-325328-3l3jznkj	94	11	structure	structure	NN
cord-325328-3l3jznkj	94	12	can	can	MD
cord-325328-3l3jznkj	94	13	be	be	VB
cord-325328-3l3jznkj	94	14	described	describe	VBN
cord-325328-3l3jznkj	94	15	as	as	IN
cord-325328-3l3jznkj	94	16	consisting	consist	VBG
cord-325328-3l3jznkj	94	17	of	of	IN
cord-325328-3l3jznkj	94	18	combinations	combination	NNS
cord-325328-3l3jznkj	94	19	of	of	IN
cord-325328-3l3jznkj	94	20	well	well	RB
cord-325328-3l3jznkj	94	21	-	-	HYPH
cord-325328-3l3jznkj	94	22	characterized	characterize	VBN
cord-325328-3l3jznkj	94	23	structural	structural	JJ
cord-325328-3l3jznkj	94	24	modules	module	NNS
cord-325328-3l3jznkj	94	25	:	:	:
cord-325328-3l3jznkj	94	26	double	double	JJ
cord-325328-3l3jznkj	94	27	helices	helix	NNS
cord-325328-3l3jznkj	94	28	,	,	,
cord-325328-3l3jznkj	94	29	motifs	motif	NNS
cord-325328-3l3jznkj	94	30	in	in	IN
cord-325328-3l3jznkj	94	31	hairpin	hairpin	JJ
cord-325328-3l3jznkj	94	32	loops	loop	NNS
cord-325328-3l3jznkj	94	33	and	and	CC
cord-325328-3l3jznkj	94	34	internal	internal	JJ
cord-325328-3l3jznkj	94	35	loops	loop	NNS
cord-325328-3l3jznkj	94	36	,	,	,
cord-325328-3l3jznkj	94	37	and	and	CC
cord-325328-3l3jznkj	94	38	tertiary	tertiary	JJ
cord-325328-3l3jznkj	94	39	interaction	interaction	NN
cord-325328-3l3jznkj	94	40	motifs	motif	NNS
cord-325328-3l3jznkj	94	41	.	.	.
cord-325328-3l3jznkj	95	1	Although	although	IN
cord-325328-3l3jznkj	95	2	we	-PRON-	PRP
cord-325328-3l3jznkj	95	3	can	can	MD
cord-325328-3l3jznkj	95	4	identify	identify	VB
cord-325328-3l3jznkj	95	5	many	many	JJ
cord-325328-3l3jznkj	95	6	motifs	motif	NNS
cord-325328-3l3jznkj	95	7	in	in	IN
cord-325328-3l3jznkj	95	8	RNA	RNA	NNP
cord-325328-3l3jznkj	95	9	structures	structure	NNS
cord-325328-3l3jznkj	95	10	,	,	,
cord-325328-3l3jznkj	95	11	we	-PRON-	PRP
cord-325328-3l3jznkj	95	12	are	be	VBP
cord-325328-3l3jznkj	95	13	far	far	RB
cord-325328-3l3jznkj	95	14	from	from	IN
cord-325328-3l3jznkj	95	15	having	have	VBG
cord-325328-3l3jznkj	95	16	a	a	DT
cord-325328-3l3jznkj	95	17	complete	complete	JJ
cord-325328-3l3jznkj	95	18	library	library	NN
cord-325328-3l3jznkj	95	19	of	of	IN
cord-325328-3l3jznkj	95	20	RNA	RNA	NNP
cord-325328-3l3jznkj	95	21	structural	structural	JJ
cord-325328-3l3jznkj	95	22	motifs	motif	NNS
cord-325328-3l3jznkj	95	23	,	,	,
cord-325328-3l3jznkj	95	24	and	and	CC
cord-325328-3l3jznkj	95	25	even	even	RB
cord-325328-3l3jznkj	95	26	farther	far	RBR
cord-325328-3l3jznkj	95	27	from	from	IN
cord-325328-3l3jznkj	95	28	understanding	understand	VBG
cord-325328-3l3jznkj	95	29	the	the	DT
cord-325328-3l3jznkj	95	30	context	context	NN
cord-325328-3l3jznkj	95	31	of	of	IN
cord-325328-3l3jznkj	95	32	these	these	DT
cord-325328-3l3jznkj	95	33	motifs	motif	NNS
cord-325328-3l3jznkj	95	34	and	and	CC
cord-325328-3l3jznkj	95	35	their	-PRON-	PRP$
cord-325328-3l3jznkj	95	36	effect	effect	NN
cord-325328-3l3jznkj	95	37	on	on	IN
cord-325328-3l3jznkj	95	38	the	the	DT
cord-325328-3l3jznkj	95	39	surrounding	surround	VBG
cord-325328-3l3jznkj	95	40	structure	structure	NN
cord-325328-3l3jznkj	95	41	,	,	,
cord-325328-3l3jznkj	95	42	and	and	CC
cord-325328-3l3jznkj	95	43	the	the	DT
cord-325328-3l3jznkj	95	44	ability	ability	NN
cord-325328-3l3jznkj	95	45	to	to	TO
cord-325328-3l3jznkj	95	46	predict	predict	VB
cord-325328-3l3jznkj	95	47	them	-PRON-	PRP
cord-325328-3l3jznkj	95	48	directly	directly	RB
cord-325328-3l3jznkj	95	49	from	from	IN
cord-325328-3l3jznkj	95	50	sequence	sequence	NN
cord-325328-3l3jznkj	95	51	.	.	.
cord-325328-3l3jznkj	96	1	Because	because	IN
cord-325328-3l3jznkj	96	2	the	the	DT
cord-325328-3l3jznkj	96	3	potential	potential	JJ
cord-325328-3l3jznkj	96	4	applications	application	NNS
cord-325328-3l3jznkj	96	5	of	of	IN
cord-325328-3l3jznkj	96	6	being	be	VBG
cord-325328-3l3jznkj	96	7	able	able	JJ
cord-325328-3l3jznkj	96	8	to	to	TO
cord-325328-3l3jznkj	96	9	predict	predict	VB
cord-325328-3l3jznkj	96	10	,	,	,
cord-325328-3l3jznkj	96	11	design	design	VB
cord-325328-3l3jznkj	96	12	[	[	-LRB-
cord-325328-3l3jznkj	96	13	44	44	CD
cord-325328-3l3jznkj	96	14	]	]	-RRB-
cord-325328-3l3jznkj	96	15	and	and	CC
cord-325328-3l3jznkj	96	16	engineer	engineer	NN
cord-325328-3l3jznkj	96	17	[	[	-LRB-
cord-325328-3l3jznkj	96	18	37	37	CD
cord-325328-3l3jznkj	96	19	,	,	,
cord-325328-3l3jznkj	96	20	38	38	CD
cord-325328-3l3jznkj	96	21	]	]	-RRB-
cord-325328-3l3jznkj	96	22	RNA	RNA	NNP
cord-325328-3l3jznkj	96	23	structure	structure	NN
cord-325328-3l3jznkj	96	24	through	through	IN
cord-325328-3l3jznkj	96	25	an	an	DT
cord-325328-3l3jznkj	96	26	understanding	understanding	NN
cord-325328-3l3jznkj	96	27	of	of	IN
cord-325328-3l3jznkj	96	28	its	-PRON-	PRP$
cord-325328-3l3jznkj	96	29	building	building	NN
cord-325328-3l3jznkj	96	30	blocks	block	NNS
cord-325328-3l3jznkj	96	31	are	be	VBP
cord-325328-3l3jznkj	96	32	so	so	RB
cord-325328-3l3jznkj	96	33	great	great	JJ
cord-325328-3l3jznkj	96	34	,	,	,
cord-325328-3l3jznkj	96	35	directed	direct	VBN
cord-325328-3l3jznkj	96	36	effort	effort	NN
cord-325328-3l3jznkj	96	37	in	in	IN
cord-325328-3l3jznkj	96	38	this	this	DT
cord-325328-3l3jznkj	96	39	area	area	NN
cord-325328-3l3jznkj	96	40	is	be	VBZ
cord-325328-3l3jznkj	96	41	warranted	warrant	VBN
cord-325328-3l3jznkj	96	42	.	.	.
cord-325328-3l3jznkj	97	1	Although	although	IN
cord-325328-3l3jznkj	97	2	we	-PRON-	PRP
cord-325328-3l3jznkj	97	3	will	will	MD
cord-325328-3l3jznkj	97	4	eventually	eventually	RB
cord-325328-3l3jznkj	97	5	obtain	obtain	VB
cord-325328-3l3jznkj	97	6	this	this	DT
cord-325328-3l3jznkj	97	7	knowledge	knowledge	NN
cord-325328-3l3jznkj	97	8	through	through	IN
cord-325328-3l3jznkj	97	9	research	research	NN
cord-325328-3l3jznkj	97	10	on	on	IN
cord-325328-3l3jznkj	97	11	individual	individual	JJ
cord-325328-3l3jznkj	97	12	biological	biological	JJ
cord-325328-3l3jznkj	97	13	RNAs	rna	NNS
cord-325328-3l3jznkj	97	14	,	,	,
cord-325328-3l3jznkj	97	15	we	-PRON-	PRP
cord-325328-3l3jznkj	97	16	should	should	MD
cord-325328-3l3jznkj	97	17	consider	consider	VB
cord-325328-3l3jznkj	97	18	a	a	DT
cord-325328-3l3jznkj	97	19	structural	structural	JJ
cord-325328-3l3jznkj	97	20	genomics	genomic	NNS
cord-325328-3l3jznkj	97	21	type	type	NN
cord-325328-3l3jznkj	97	22	project	project	NN
cord-325328-3l3jznkj	97	23	to	to	TO
cord-325328-3l3jznkj	97	24	map	map	VB
cord-325328-3l3jznkj	97	25	the	the	DT
cord-325328-3l3jznkj	97	26	universe	universe	NN
cord-325328-3l3jznkj	97	27	of	of	IN
cord-325328-3l3jznkj	97	28	RNA	RNA	NNP
cord-325328-3l3jznkj	97	29	motifs	motif	NNS
cord-325328-3l3jznkj	97	30	,	,	,
cord-325328-3l3jznkj	97	31	and	and	CC
cord-325328-3l3jznkj	97	32	a	a	DT
cord-325328-3l3jznkj	97	33	parallel	parallel	JJ
cord-325328-3l3jznkj	97	34	computational	computational	JJ
cord-325328-3l3jznkj	97	35	effort	effort	NN
cord-325328-3l3jznkj	97	36	to	to	TO
cord-325328-3l3jznkj	97	37	predict	predict	VB
cord-325328-3l3jznkj	97	38	motifs	motif	NNS
cord-325328-3l3jznkj	97	39	from	from	IN
cord-325328-3l3jznkj	97	40	sequence	sequence	NN
cord-325328-3l3jznkj	97	41	and	and	CC
cord-325328-3l3jznkj	97	42	determine	determine	VB
cord-325328-3l3jznkj	97	43	how	how	WRB
cord-325328-3l3jznkj	97	44	they	-PRON-	PRP
cord-325328-3l3jznkj	97	45	interact	interact	VBP
cord-325328-3l3jznkj	97	46	combinatorially	combinatorially	RB
cord-325328-3l3jznkj	97	47	to	to	TO
cord-325328-3l3jznkj	97	48	build	build	VB
cord-325328-3l3jznkj	97	49	up	up	RP
cord-325328-3l3jznkj	97	50	an	an	DT
cord-325328-3l3jznkj	97	51	overall	overall	JJ
cord-325328-3l3jznkj	97	52	RNA	RNA	NNP
cord-325328-3l3jznkj	97	53	structure	structure	NN
cord-325328-3l3jznkj	97	54	.	.	.
cord-325328-3l3jznkj	98	1	An	an	DT
cord-325328-3l3jznkj	98	2	emerging	emerge	VBG
cord-325328-3l3jznkj	98	3	trend	trend	NN
cord-325328-3l3jznkj	98	4	in	in	IN
cord-325328-3l3jznkj	98	5	RNA	RNA	NNP
cord-325328-3l3jznkj	98	6	structural	structural	JJ
cord-325328-3l3jznkj	98	7	biology	biology	NN
cord-325328-3l3jznkj	98	8	is	be	VBZ
cord-325328-3l3jznkj	98	9	the	the	DT
cord-325328-3l3jznkj	98	10	association	association	NN
cord-325328-3l3jznkj	98	11	of	of	IN
cord-325328-3l3jznkj	98	12	RNA	RNA	NNP
cord-325328-3l3jznkj	98	13	secondary	secondary	JJ
cord-325328-3l3jznkj	98	14	structure	structure	NN
cord-325328-3l3jznkj	98	15	and	and	CC
cord-325328-3l3jznkj	98	16	tertiary	tertiary	JJ
cord-325328-3l3jznkj	98	17	interaction	interaction	NN
cord-325328-3l3jznkj	98	18	motifs	motif	NNS
cord-325328-3l3jznkj	98	19	with	with	IN
cord-325328-3l3jznkj	98	20	human	human	JJ
cord-325328-3l3jznkj	98	21	disease	disease	NN
cord-325328-3l3jznkj	98	22	.	.	.
cord-325328-3l3jznkj	99	1	Three	three	CD
cord-325328-3l3jznkj	99	2	examples	example	NNS
cord-325328-3l3jznkj	99	3	have	have	VBP
cord-325328-3l3jznkj	99	4	recently	recently	RB
cord-325328-3l3jznkj	99	5	appeared	appear	VBN
cord-325328-3l3jznkj	99	6	in	in	IN
cord-325328-3l3jznkj	99	7	the	the	DT
cord-325328-3l3jznkj	99	8	literature	literature	NN
cord-325328-3l3jznkj	99	9	recognizing	recognize	VBG
cord-325328-3l3jznkj	99	10	these	these	DT
cord-325328-3l3jznkj	99	11	relationships	relationship	NNS
cord-325328-3l3jznkj	99	12	and	and	CC
cord-325328-3l3jznkj	99	13	correlating	correlate	VBG
cord-325328-3l3jznkj	99	14	them	-PRON-	PRP
cord-325328-3l3jznkj	99	15	with	with	IN
cord-325328-3l3jznkj	99	16	specific	specific	JJ
cord-325328-3l3jznkj	99	17	structures	structure	NNS
cord-325328-3l3jznkj	99	18	.	.	.
cord-325328-3l3jznkj	100	1	The	the	DT
cord-325328-3l3jznkj	100	2	most	most	RBS
cord-325328-3l3jznkj	100	3	recent	recent	JJ
cord-325328-3l3jznkj	100	4	of	of	IN
cord-325328-3l3jznkj	100	5	these	these	DT
cord-325328-3l3jznkj	100	6	is	be	VBZ
cord-325328-3l3jznkj	100	7	a	a	DT
cord-325328-3l3jznkj	100	8	proposed	propose	VBN
cord-325328-3l3jznkj	100	9	RNA	rna	NN
cord-325328-3l3jznkj	100	10	target	target	NN
cord-325328-3l3jznkj	100	11	,	,	,
cord-325328-3l3jznkj	100	12	306	306	CD
cord-325328-3l3jznkj	100	13	Sequences	Sequences	NNPS
cord-325328-3l3jznkj	100	14	and	and	CC
cord-325328-3l3jznkj	100	15	topology	topology	NN
cord-325328-3l3jznkj	100	16	Interacting	interact	VBG
cord-325328-3l3jznkj	100	17	hairpin	hairpin	JJ
cord-325328-3l3jznkj	100	18	loops	loop	NNS
cord-325328-3l3jznkj	100	19	from	from	IN
cord-325328-3l3jznkj	100	20	the	the	DT
cord-325328-3l3jznkj	100	21	guanine	guanine	NN
cord-325328-3l3jznkj	100	22	-	-	HYPH
cord-325328-3l3jznkj	100	23	responsive	responsive	JJ
cord-325328-3l3jznkj	100	24	riboswitch	riboswitch	NN
cord-325328-3l3jznkj	100	25	.	.	.
cord-325328-3l3jznkj	101	1	One	one	CD
cord-325328-3l3jznkj	101	2	loop	loop	NN
cord-325328-3l3jznkj	101	3	is	be	VBZ
cord-325328-3l3jznkj	101	4	in	in	IN
cord-325328-3l3jznkj	101	5	cyan	cyan	NN
cord-325328-3l3jznkj	101	6	and	and	CC
cord-325328-3l3jznkj	101	7	the	the	DT
cord-325328-3l3jznkj	101	8	other	other	JJ
cord-325328-3l3jznkj	101	9	is	be	VBZ
cord-325328-3l3jznkj	101	10	in	in	IN
cord-325328-3l3jznkj	101	11	magenta	magenta	NN
cord-325328-3l3jznkj	101	12	,	,	,
cord-325328-3l3jznkj	101	13	with	with	IN
cord-325328-3l3jznkj	101	14	stacked	stack	VBN
cord-325328-3l3jznkj	101	15	quartets	quartet	NNS
cord-325328-3l3jznkj	101	16	in	in	IN
cord-325328-3l3jznkj	101	17	the	the	DT
cord-325328-3l3jznkj	101	18	loops	loop	NNS
cord-325328-3l3jznkj	101	19	colored	color	VBN
cord-325328-3l3jznkj	101	20	yellow	yellow	JJ
cord-325328-3l3jznkj	101	21	and	and	CC
cord-325328-3l3jznkj	101	22	orange	orange	NN
cord-325328-3l3jznkj	101	23	.	.	.
cord-325328-3l3jznkj	102	1	Helical	helical	JJ
cord-325328-3l3jznkj	102	2	stems	stem	NNS
cord-325328-3l3jznkj	102	3	of	of	IN
cord-325328-3l3jznkj	102	4	the	the	DT
cord-325328-3l3jznkj	102	5	hairpin	hairpin	JJ
cord-325328-3l3jznkj	102	6	loops	loop	NNS
cord-325328-3l3jznkj	102	7	are	be	VBP
cord-325328-3l3jznkj	102	8	colored	color	VBN
cord-325328-3l3jznkj	102	9	blue	blue	JJ
cord-325328-3l3jznkj	102	10	.	.	.
cord-325328-3l3jznkj	103	1	MMLV	MMLV	NNP
cord-325328-3l3jznkj	103	2	core	core	NN
cord-325328-3l3jznkj	103	3	encapsidation	encapsidation	NN
cord-325328-3l3jznkj	103	4	signal	signal	NN
cord-325328-3l3jznkj	103	5	.	.	.
cord-325328-3l3jznkj	104	1	Green	Green	NNP
cord-325328-3l3jznkj	104	2	,	,	,
cord-325328-3l3jznkj	104	3	GNRA	GNRA	NNP
cord-325328-3l3jznkj	104	4	tetraloop	tetraloop	NN
cord-325328-3l3jznkj	104	5	;	;	:
cord-325328-3l3jznkj	104	6	salmon	salmon	NN
cord-325328-3l3jznkj	104	7	,	,	,
cord-325328-3l3jznkj	104	8	disordered	disordered	JJ
cord-325328-3l3jznkj	104	9	tetraloop	tetraloop	NN
cord-325328-3l3jznkj	104	10	;	;	:
cord-325328-3l3jznkj	104	11	violet	violet	NN
cord-325328-3l3jznkj	104	12	,	,	,
cord-325328-3l3jznkj	104	13	Watson	Watson	NNP
cord-325328-3l3jznkj	104	14	-	-	HYPH
cord-325328-3l3jznkj	104	15	Crick	Crick	NNP
cord-325328-3l3jznkj	104	16	double	double	JJ
cord-325328-3l3jznkj	104	17	helix	helix	NN
cord-325328-3l3jznkj	104	18	;	;	,
cord-325328-3l3jznkj	104	19	blue	blue	JJ
cord-325328-3l3jznkj	104	20	,	,	,
cord-325328-3l3jznkj	104	21	non	non	JJ
cord-325328-3l3jznkj	104	22	-	-	JJ
cord-325328-3l3jznkj	104	23	canonical	canonical	JJ
cord-325328-3l3jznkj	104	24	base	base	NN
cord-325328-3l3jznkj	104	25	pairs	pair	NNS
cord-325328-3l3jznkj	104	26	;	;	:
cord-325328-3l3jznkj	104	27	cyan	cyan	NNP
cord-325328-3l3jznkj	104	28	,	,	,
cord-325328-3l3jznkj	104	29	base	base	VB
cord-325328-3l3jznkj	104	30	triple	triple	JJ
cord-325328-3l3jznkj	104	31	;	;	:
cord-325328-3l3jznkj	104	32	orange	orange	NN
cord-325328-3l3jznkj	104	33	,	,	,
cord-325328-3l3jznkj	104	34	A	A	NNP
cord-325328-3l3jznkj	104	35	-	-	HYPH
cord-325328-3l3jznkj	104	36	minor	minor	JJ
cord-325328-3l3jznkj	104	37	K	k	NN
cord-325328-3l3jznkj	104	38	-	-	HYPH
cord-325328-3l3jznkj	104	39	turn	turn	NN
cord-325328-3l3jznkj	104	40	;	;	:
cord-325328-3l3jznkj	104	41	yellow	yellow	JJ
cord-325328-3l3jznkj	104	42	,	,	,
cord-325328-3l3jznkj	104	43	linker	linker	NN
cord-325328-3l3jznkj	104	44	region	region	NN
cord-325328-3l3jznkj	104	45	and	and	CC
cord-325328-3l3jznkj	104	46	bulge	bulge	NN
cord-325328-3l3jznkj	104	47	base	base	NN
cord-325328-3l3jznkj	104	48	.	.	.
cord-325328-3l3jznkj	105	1	formed	form	VBN
cord-325328-3l3jznkj	105	2	by	by	IN
cord-325328-3l3jznkj	105	3	kissing	kiss	VBG
cord-325328-3l3jznkj	105	4	hairpin	hairpin	NN
cord-325328-3l3jznkj	105	5	loop	loop	NN
cord-325328-3l3jznkj	105	6	tertiary	tertiary	JJ
cord-325328-3l3jznkj	105	7	interaction	interaction	NN
cord-325328-3l3jznkj	105	8	motifs	motif	NNS
cord-325328-3l3jznkj	105	9	,	,	,
cord-325328-3l3jznkj	105	10	for	for	IN
cord-325328-3l3jznkj	105	11	the	the	DT
cord-325328-3l3jznkj	105	12	binding	binding	NN
cord-325328-3l3jznkj	105	13	of	of	IN
cord-325328-3l3jznkj	105	14	the	the	DT
cord-325328-3l3jznkj	105	15	KH2	KH2	NNP
cord-325328-3l3jznkj	105	16	domain	domain	NN
cord-325328-3l3jznkj	105	17	of	of	IN
cord-325328-3l3jznkj	105	18	the	the	DT
cord-325328-3l3jznkj	105	19	fragile	fragile	JJ
cord-325328-3l3jznkj	105	20	-	-	HYPH
cord-325328-3l3jznkj	105	21	X	x	NN
cord-325328-3l3jznkj	105	22	mental	mental	JJ
cord-325328-3l3jznkj	105	23	retardation	retardation	NN
cord-325328-3l3jznkj	105	24	protein	protein	NN
cord-325328-3l3jznkj	105	25	(	(	-LRB-
cord-325328-3l3jznkj	105	26	FMRP	FMRP	NNP
cord-325328-3l3jznkj	105	27	)	)	-RRB-
cord-325328-3l3jznkj	106	1	[	[	-LRB-
cord-325328-3l3jznkj	106	2	45	45	CD
cord-325328-3l3jznkj	106	3	]	]	-RRB-
cord-325328-3l3jznkj	106	4	.	.	.
cord-325328-3l3jznkj	107	1	This	this	DT
cord-325328-3l3jznkj	107	2	complex	complex	JJ
cord-325328-3l3jznkj	107	3	interaction	interaction	NN
cord-325328-3l3jznkj	107	4	competes	compete	VBZ
cord-325328-3l3jznkj	107	5	with	with	IN
cord-325328-3l3jznkj	107	6	the	the	DT
cord-325328-3l3jznkj	107	7	binding	binding	NN
cord-325328-3l3jznkj	107	8	of	of	IN
cord-325328-3l3jznkj	107	9	FMRP	FMRP	NNP
cord-325328-3l3jznkj	107	10	to	to	IN
cord-325328-3l3jznkj	107	11	brain	brain	NN
cord-325328-3l3jznkj	107	12	polyribosomes	polyribosome	NNS
cord-325328-3l3jznkj	107	13	and	and	CC
cord-325328-3l3jznkj	107	14	is	be	VBZ
cord-325328-3l3jznkj	107	15	associated	associate	VBN
cord-325328-3l3jznkj	107	16	with	with	IN
cord-325328-3l3jznkj	107	17	a	a	DT
cord-325328-3l3jznkj	107	18	crucial	crucial	JJ
cord-325328-3l3jznkj	107	19	known	know	VBN
cord-325328-3l3jznkj	107	20	mutation	mutation	NN
cord-325328-3l3jznkj	107	21	.	.	.
cord-325328-3l3jznkj	108	1	Another	another	DT
cord-325328-3l3jznkj	108	2	example	example	NN
cord-325328-3l3jznkj	108	3	is	be	VBZ
cord-325328-3l3jznkj	108	4	a	a	DT
cord-325328-3l3jznkj	108	5	proposed	propose	VBN
cord-325328-3l3jznkj	108	6	explanation	explanation	NN
cord-325328-3l3jznkj	108	7	for	for	IN
cord-325328-3l3jznkj	108	8	lead	lead	JJ
cord-325328-3l3jznkj	108	9	toxicity	toxicity	NN
cord-325328-3l3jznkj	108	10	by	by	IN
cord-325328-3l3jznkj	108	11	hydrolysis	hydrolysis	NN
cord-325328-3l3jznkj	108	12	of	of	IN
cord-325328-3l3jznkj	108	13	mRNAs	mRNAs	NNPS
cord-325328-3l3jznkj	108	14	containing	contain	VBG
cord-325328-3l3jznkj	108	15	the	the	DT
cord-325328-3l3jznkj	108	16	leadzyme	leadzyme	NNS
cord-325328-3l3jznkj	108	17	motif	motif	NN
cord-325328-3l3jznkj	108	18	[	[	-LRB-
cord-325328-3l3jznkj	108	19	46	46	CD
cord-325328-3l3jznkj	108	20	]	]	-RRB-
cord-325328-3l3jznkj	108	21	.	.	.
cord-325328-3l3jznkj	109	1	Finally	finally	RB
cord-325328-3l3jznkj	109	2	,	,	,
cord-325328-3l3jznkj	109	3	models	model	NNS
cord-325328-3l3jznkj	109	4	of	of	IN
cord-325328-3l3jznkj	109	5	the	the	DT
cord-325328-3l3jznkj	109	6	role	role	NN
cord-325328-3l3jznkj	109	7	of	of	IN
cord-325328-3l3jznkj	109	8	mRNA	mRNA	NNP
cord-325328-3l3jznkj	109	9	secondary	secondary	JJ
cord-325328-3l3jznkj	109	10	structure	structure	NN
cord-325328-3l3jznkj	109	11	in	in	IN
cord-325328-3l3jznkj	109	12	a	a	DT
cord-325328-3l3jznkj	109	13	variety	variety	NN
cord-325328-3l3jznkj	109	14	of	of	IN
cord-325328-3l3jznkj	109	15	human	human	JJ
cord-325328-3l3jznkj	109	16	neurodegenerative	neurodegenerative	JJ
cord-325328-3l3jznkj	109	17	diseases	disease	NNS
cord-325328-3l3jznkj	109	18	(	(	-LRB-
cord-325328-3l3jznkj	109	19	trinucleotide	trinucleotide	NNP
cord-325328-3l3jznkj	109	20	repeat	repeat	VB
cord-325328-3l3jznkj	109	21	expansion	expansion	NN
cord-325328-3l3jznkj	109	22	diseases	disease	NNS
cord-325328-3l3jznkj	109	23	)	)	-RRB-
cord-325328-3l3jznkj	109	24	caused	cause	VBN
cord-325328-3l3jznkj	109	25	by	by	IN
cord-325328-3l3jznkj	109	26	the	the	DT
cord-325328-3l3jznkj	109	27	expansion	expansion	NN
cord-325328-3l3jznkj	109	28	of	of	IN
cord-325328-3l3jznkj	109	29	CAG	CAG	NNP
cord-325328-3l3jznkj	109	30	repeats	repeat	VBZ
cord-325328-3l3jznkj	109	31	in	in	IN
cord-325328-3l3jznkj	109	32	the	the	DT
cord-325328-3l3jznkj	109	33	open	open	JJ
cord-325328-3l3jznkj	109	34	reading	reading	NN
cord-325328-3l3jznkj	109	35	frames	frame	NNS
cord-325328-3l3jznkj	109	36	of	of	IN
cord-325328-3l3jznkj	109	37	certain	certain	JJ
cord-325328-3l3jznkj	109	38	genes	gene	NNS
cord-325328-3l3jznkj	109	39	have	have	VBP
cord-325328-3l3jznkj	109	40	been	be	VBN
cord-325328-3l3jznkj	109	41	proposed	propose	VBN
cord-325328-3l3jznkj	109	42	and	and	CC
cord-325328-3l3jznkj	109	43	are	be	VBP
cord-325328-3l3jznkj	109	44	under	under	IN
cord-325328-3l3jznkj	109	45	active	active	JJ
cord-325328-3l3jznkj	109	46	study	study	NN
cord-325328-3l3jznkj	109	47	[	[	-LRB-
cord-325328-3l3jznkj	109	48	47	47	CD
cord-325328-3l3jznkj	109	49	,	,	,
cord-325328-3l3jznkj	109	50	48	48	CD
cord-325328-3l3jznkj	109	51	]	]	-RRB-
cord-325328-3l3jznkj	109	52	.	.	.
cord-325328-3l3jznkj	110	1	Crystallization	crystallization	NN
cord-325328-3l3jznkj	110	2	of	of	IN
cord-325328-3l3jznkj	110	3	RNA	RNA	NNP
cord-325328-3l3jznkj	110	4	and	and	CC
cord-325328-3l3jznkj	110	5	RNA	RNA	NNP
cord-325328-3l3jznkj	110	6	-	-	HYPH
cord-325328-3l3jznkj	110	7	protein	protein	NN
cord-325328-3l3jznkj	110	8	complexes	complex	NNS
cord-325328-3l3jznkj	110	9	NMR	NMR	NNP
cord-325328-3l3jznkj	110	10	structure	structure	NN
cord-325328-3l3jznkj	110	11	of	of	IN
cord-325328-3l3jznkj	110	12	the	the	DT
cord-325328-3l3jznkj	110	13	101-nucleotide	101-nucleotide	CD
cord-325328-3l3jznkj	110	14	core	core	NN
cord-325328-3l3jznkj	110	15	encapsidation	encapsidation	NN
cord-325328-3l3jznkj	110	16	signal	signal	NN
cord-325328-3l3jznkj	110	17	of	of	IN
cord-325328-3l3jznkj	110	18	the	the	DT
cord-325328-3l3jznkj	110	19	Moloney	Moloney	NNP
cord-325328-3l3jznkj	110	20	murine	murine	JJ
cord-325328-3l3jznkj	110	21	leukemia	leukemia	NN
cord-325328-3l3jznkj	110	22	virus	virus	NN
cord-325328-3l3jznkj	111	1	The	the	DT
cord-325328-3l3jznkj	111	2	RNA	RNA	NNP
cord-325328-3l3jznkj	111	3	structure	structure	NN
cord-325328-3l3jznkj	111	4	of	of	IN
cord-325328-3l3jznkj	111	5	the	the	DT
cord-325328-3l3jznkj	111	6	core	core	NN
cord-325328-3l3jznkj	111	7	recognition	recognition	NN
cord-325328-3l3jznkj	111	8	signal	signal	NN
cord-325328-3l3jznkj	111	9	for	for	IN
cord-325328-3l3jznkj	111	10	encapsidation	encapsidation	NN
cord-325328-3l3jznkj	111	11	of	of	IN
cord-325328-3l3jznkj	111	12	the	the	DT
cord-325328-3l3jznkj	111	13	positive	positive	JJ
cord-325328-3l3jznkj	111	14	strand	strand	NN
cord-325328-3l3jznkj	111	15	genome	genome	NN
cord-325328-3l3jznkj	111	16	of	of	IN
cord-325328-3l3jznkj	111	17	MMLV	MMLV	NNP
cord-325328-3l3jznkj	111	18	is	be	VBZ
cord-325328-3l3jznkj	111	19	reported	report	VBN
cord-325328-3l3jznkj	111	20	.	.	.
cord-325328-3l3jznkj	112	1	This	this	DT
cord-325328-3l3jznkj	112	2	is	be	VBZ
cord-325328-3l3jznkj	112	3	the	the	DT
cord-325328-3l3jznkj	112	4	largest	large	JJS
cord-325328-3l3jznkj	112	5	NMR	NMR	NNP
cord-325328-3l3jznkj	112	6	structure	structure	NN
cord-325328-3l3jznkj	112	7	of	of	IN
cord-325328-3l3jznkj	112	8	an	an	DT
cord-325328-3l3jznkj	112	9	RNA	RNA	NNP
cord-325328-3l3jznkj	112	10	determined	determined	JJ
cord-325328-3l3jznkj	112	11	to	to	IN
cord-325328-3l3jznkj	112	12	date	date	NN
cord-325328-3l3jznkj	112	13	The	the	DT
cord-325328-3l3jznkj	112	14	Nucleic	Nucleic	NNP
cord-325328-3l3jznkj	112	15	Acid	acid	NN
cord-325328-3l3jznkj	112	16	Database	database	NN
cord-325328-3l3jznkj	112	17	:	:	:
cord-325328-3l3jznkj	112	18	a	a	DT
cord-325328-3l3jznkj	112	19	comprehensive	comprehensive	JJ
cord-325328-3l3jznkj	112	20	relational	relational	JJ
cord-325328-3l3jznkj	112	21	database	database	NN
cord-325328-3l3jznkj	112	22	of	of	IN
cord-325328-3l3jznkj	112	23	three	three	CD
cord-325328-3l3jznkj	112	24	-	-	HYPH
cord-325328-3l3jznkj	112	25	dimensional	dimensional	JJ
cord-325328-3l3jznkj	112	26	structures	structure	NNS
cord-325328-3l3jznkj	112	27	of	of	IN
cord-325328-3l3jznkj	112	28	nucleic	nucleic	JJ
cord-325328-3l3jznkj	112	29	acids	acid	NNS
cord-325328-3l3jznkj	112	30	Analysis	Analysis	NNP
cord-325328-3l3jznkj	112	31	of	of	IN
cord-325328-3l3jznkj	112	32	RNA	RNA	NNP
cord-325328-3l3jznkj	112	33	motifs	motif	NNS
cord-325328-3l3jznkj	113	1	The	the	DT
cord-325328-3l3jznkj	113	2	complete	complete	JJ
cord-325328-3l3jznkj	113	3	atomic	atomic	JJ
cord-325328-3l3jznkj	113	4	structure	structure	NN
cord-325328-3l3jznkj	113	5	of	of	IN
cord-325328-3l3jznkj	113	6	the	the	DT
cord-325328-3l3jznkj	113	7	large	large	JJ
cord-325328-3l3jznkj	113	8	ribosomal	ribosomal	JJ
cord-325328-3l3jznkj	113	9	subunit	subunit	NN
cord-325328-3l3jznkj	113	10	at	at	IN
cord-325328-3l3jznkj	113	11	2.4	2.4	CD
cord-325328-3l3jznkj	113	12	Å	å	NN
cord-325328-3l3jznkj	113	13	resolution	resolution	NN
cord-325328-3l3jznkj	113	14	High	high	JJ
cord-325328-3l3jznkj	113	15	resolution	resolution	NN
cord-325328-3l3jznkj	113	16	structure	structure	NN
cord-325328-3l3jznkj	113	17	of	of	IN
cord-325328-3l3jznkj	113	18	the	the	DT
cord-325328-3l3jznkj	113	19	large	large	JJ
cord-325328-3l3jznkj	113	20	ribosomal	ribosomal	JJ
cord-325328-3l3jznkj	113	21	subunit	subunit	NN
cord-325328-3l3jznkj	113	22	from	from	IN
cord-325328-3l3jznkj	113	23	a	a	DT
cord-325328-3l3jznkj	113	24	mesophilic	mesophilic	FW
cord-325328-3l3jznkj	113	25	eubacterium	eubacterium	NN
cord-325328-3l3jznkj	113	26	Crystal	Crystal	NNP
cord-325328-3l3jznkj	113	27	structure	structure	NN
cord-325328-3l3jznkj	113	28	of	of	IN
cord-325328-3l3jznkj	113	29	the	the	DT
cord-325328-3l3jznkj	113	30	30S	30s	CD
cord-325328-3l3jznkj	113	31	ribosomal	ribosomal	JJ
cord-325328-3l3jznkj	113	32	subunit	subunit	NN
cord-325328-3l3jznkj	113	33	from	from	IN
cord-325328-3l3jznkj	113	34	Thermus	Thermus	NNP
cord-325328-3l3jznkj	113	35	thermophilus	thermophilus	NNP
cord-325328-3l3jznkj	113	36	:	:	:
cord-325328-3l3jznkj	113	37	purification	purification	NN
cord-325328-3l3jznkj	113	38	,	,	,
cord-325328-3l3jznkj	113	39	crystallization	crystallization	NN
cord-325328-3l3jznkj	113	40	and	and	CC
cord-325328-3l3jznkj	113	41	structure	structure	NN
cord-325328-3l3jznkj	113	42	determination	determination	NN
cord-325328-3l3jznkj	114	1	The	the	DT
cord-325328-3l3jznkj	114	2	roles	role	NNS
cord-325328-3l3jznkj	114	3	of	of	IN
cord-325328-3l3jznkj	114	4	ribosomal	ribosomal	JJ
cord-325328-3l3jznkj	114	5	proteins	protein	NNS
cord-325328-3l3jznkj	114	6	in	in	IN
cord-325328-3l3jznkj	114	7	the	the	DT
cord-325328-3l3jznkj	114	8	structure	structure	NN
cord-325328-3l3jznkj	114	9	assembly	assembly	NN
cord-325328-3l3jznkj	114	10	,	,	,
cord-325328-3l3jznkj	114	11	and	and	CC
cord-325328-3l3jznkj	114	12	evolution	evolution	NN
cord-325328-3l3jznkj	114	13	of	of	IN
cord-325328-3l3jznkj	114	14	the	the	DT
cord-325328-3l3jznkj	114	15	large	large	JJ
cord-325328-3l3jznkj	114	16	ribosomal	ribosomal	JJ
cord-325328-3l3jznkj	114	17	subunit	subunit	NN
cord-325328-3l3jznkj	115	1	The	the	DT
cord-325328-3l3jznkj	115	2	contribution	contribution	NN
cord-325328-3l3jznkj	115	3	of	of	IN
cord-325328-3l3jznkj	115	4	metal	metal	NN
cord-325328-3l3jznkj	115	5	ions	ion	NNS
cord-325328-3l3jznkj	115	6	to	to	IN
cord-325328-3l3jznkj	115	7	the	the	DT
cord-325328-3l3jznkj	115	8	structural	structural	JJ
cord-325328-3l3jznkj	115	9	stability	stability	NN
cord-325328-3l3jznkj	115	10	of	of	IN
cord-325328-3l3jznkj	115	11	the	the	DT
cord-325328-3l3jznkj	115	12	large	large	JJ
cord-325328-3l3jznkj	115	13	ribosomal	ribosomal	JJ
cord-325328-3l3jznkj	115	14	subunit	subunit	NN
cord-325328-3l3jznkj	115	15	Functional	functional	JJ
cord-325328-3l3jznkj	115	16	insights	insight	NNS
cord-325328-3l3jznkj	115	17	from	from	IN
cord-325328-3l3jznkj	115	18	the	the	DT
cord-325328-3l3jznkj	115	19	structure	structure	NN
cord-325328-3l3jznkj	115	20	of	of	IN
cord-325328-3l3jznkj	115	21	the	the	DT
cord-325328-3l3jznkj	115	22	30S	30s	CD
cord-325328-3l3jznkj	115	23	ribosomal	ribosomal	JJ
cord-325328-3l3jznkj	115	24	subunit	subunit	NN
cord-325328-3l3jznkj	115	25	and	and	CC
cord-325328-3l3jznkj	115	26	its	-PRON-	PRP$
cord-325328-3l3jznkj	115	27	interactions	interaction	NNS
cord-325328-3l3jznkj	115	28	with	with	IN
cord-325328-3l3jznkj	115	29	antibiotics	antibiotic	NNS
cord-325328-3l3jznkj	115	30	Atomic	atomic	JJ
cord-325328-3l3jznkj	115	31	structures	structure	NNS
cord-325328-3l3jznkj	115	32	of	of	IN
cord-325328-3l3jznkj	115	33	the	the	DT
cord-325328-3l3jznkj	115	34	30S	30s	CD
cord-325328-3l3jznkj	115	35	subunit	subunit	NN
cord-325328-3l3jznkj	115	36	and	and	CC
cord-325328-3l3jznkj	115	37	its	-PRON-	PRP$
cord-325328-3l3jznkj	115	38	complexes	complex	NNS
cord-325328-3l3jznkj	115	39	with	with	IN
cord-325328-3l3jznkj	115	40	ligands	ligand	NNS
cord-325328-3l3jznkj	115	41	and	and	CC
cord-325328-3l3jznkj	115	42	antibiotics	antibiotic	NNS
cord-325328-3l3jznkj	115	43	Crystal	Crystal	NNP
cord-325328-3l3jznkj	115	44	structure	structure	NN
cord-325328-3l3jznkj	115	45	of	of	IN
cord-325328-3l3jznkj	115	46	an	an	DT
cord-325328-3l3jznkj	115	47	initiation	initiation	NN
cord-325328-3l3jznkj	115	48	factor	factor	NN
cord-325328-3l3jznkj	115	49	bound	bind	VBN
cord-325328-3l3jznkj	115	50	to	to	IN
cord-325328-3l3jznkj	115	51	the	the	DT
cord-325328-3l3jznkj	115	52	30S	30s	CD
cord-325328-3l3jznkj	115	53	ribosomal	ribosomal	JJ
cord-325328-3l3jznkj	115	54	subunit	subunit	NN
cord-325328-3l3jznkj	115	55	Crystal	Crystal	NNP
cord-325328-3l3jznkj	115	56	structure	structure	NN
cord-325328-3l3jznkj	115	57	of	of	IN
cord-325328-3l3jznkj	115	58	a	a	DT
cord-325328-3l3jznkj	115	59	group	group	NN
cord-325328-3l3jznkj	115	60	I	-PRON-	PRP
cord-325328-3l3jznkj	115	61	intron	intron	NN
cord-325328-3l3jznkj	115	62	splicing	splice	VBG
cord-325328-3l3jznkj	115	63	intermediate	intermediate	JJ
cord-325328-3l3jznkj	115	64	Crystal	Crystal	NNP
cord-325328-3l3jznkj	115	65	structure	structure	NN
cord-325328-3l3jznkj	115	66	of	of	IN
cord-325328-3l3jznkj	115	67	a	a	DT
cord-325328-3l3jznkj	115	68	self	self	NN
cord-325328-3l3jznkj	115	69	-	-	HYPH
cord-325328-3l3jznkj	115	70	splicing	splice	VBG
cord-325328-3l3jznkj	115	71	group	group	NN
cord-325328-3l3jznkj	116	1	I	-PRON-	PRP
cord-325328-3l3jznkj	116	2	intron	intron	VBP
cord-325328-3l3jznkj	116	3	with	with	IN
cord-325328-3l3jznkj	116	4	both	both	DT
cord-325328-3l3jznkj	116	5	exons	exon	NNS
cord-325328-3l3jznkj	116	6	Crystal	Crystal	NNP
cord-325328-3l3jznkj	116	7	structure	structure	NN
cord-325328-3l3jznkj	116	8	of	of	IN
cord-325328-3l3jznkj	116	9	a	a	DT
cord-325328-3l3jznkj	116	10	phage	phage	NN
cord-325328-3l3jznkj	116	11	Twort	Twort	NNP
cord-325328-3l3jznkj	116	12	group	group	NN
cord-325328-3l3jznkj	116	13	I	-PRON-	PRP
cord-325328-3l3jznkj	116	14	ribozyme	ribozyme	NN
cord-325328-3l3jznkj	116	15	-	-	HYPH
cord-325328-3l3jznkj	116	16	product	product	NN
cord-325328-3l3jznkj	116	17	complex	complex	NN
cord-325328-3l3jznkj	116	18	Structure	structure	NN
cord-325328-3l3jznkj	116	19	of	of	IN
cord-325328-3l3jznkj	116	20	the	the	DT
cord-325328-3l3jznkj	116	21	Tetrahymena	Tetrahymena	NNP
cord-325328-3l3jznkj	116	22	ribozyme	ribozyme	NN
cord-325328-3l3jznkj	116	23	:	:	:
cord-325328-3l3jznkj	116	24	base	base	NN
cord-325328-3l3jznkj	116	25	triple	triple	JJ
cord-325328-3l3jznkj	116	26	sandwich	sandwich	NN
cord-325328-3l3jznkj	116	27	and	and	CC
cord-325328-3l3jznkj	116	28	metal	metal	NN
cord-325328-3l3jznkj	116	29	ion	ion	NN
cord-325328-3l3jznkj	116	30	at	at	IN
cord-325328-3l3jznkj	116	31	the	the	DT
cord-325328-3l3jznkj	116	32	active	active	JJ
cord-325328-3l3jznkj	116	33	site	site	NN
cord-325328-3l3jznkj	116	34	Crystal	Crystal	NNP
cord-325328-3l3jznkj	116	35	structure	structure	NN
cord-325328-3l3jznkj	116	36	of	of	IN
cord-325328-3l3jznkj	116	37	the	the	DT
cord-325328-3l3jznkj	116	38	specificity	specificity	NN
cord-325328-3l3jznkj	116	39	domain	domain	NN
cord-325328-3l3jznkj	116	40	of	of	IN
cord-325328-3l3jznkj	116	41	ribonuclease	ribonuclease	NN
cord-325328-3l3jznkj	116	42	P	p	NN
cord-325328-3l3jznkj	116	43	Basis	basis	NN
cord-325328-3l3jznkj	116	44	for	for	IN
cord-325328-3l3jznkj	116	45	structural	structural	JJ
cord-325328-3l3jznkj	116	46	diversity	diversity	NN
cord-325328-3l3jznkj	116	47	in	in	IN
cord-325328-3l3jznkj	116	48	homologous	homologous	JJ
cord-325328-3l3jznkj	116	49	RNAs	rna	NNS
cord-325328-3l3jznkj	117	1	The	the	DT
cord-325328-3l3jznkj	117	2	crystal	crystal	JJ
cord-325328-3l3jznkj	117	3	structure	structure	NN
cord-325328-3l3jznkj	117	4	of	of	IN
cord-325328-3l3jznkj	117	5	the	the	DT
cord-325328-3l3jznkj	117	6	specificity	specificity	NN
cord-325328-3l3jznkj	117	7	domain	domain	NN
cord-325328-3l3jznkj	117	8	of	of	IN
cord-325328-3l3jznkj	117	9	A	a	DT
cord-325328-3l3jznkj	117	10	-	-	HYPH
cord-325328-3l3jznkj	117	11	type	type	NN
cord-325328-3l3jznkj	117	12	ribonuclease	ribonuclease	NN
cord-325328-3l3jznkj	117	13	P	p	NN
cord-325328-3l3jznkj	117	14	RNA	RNA	NNP
cord-325328-3l3jznkj	117	15	from	from	IN
cord-325328-3l3jznkj	117	16	Thermus	Thermus	NNP
cord-325328-3l3jznkj	117	17	thermophilus	thermophilus	NNP
cord-325328-3l3jznkj	117	18	was	be	VBD
cord-325328-3l3jznkj	117	19	determined	determine	VBN
cord-325328-3l3jznkj	117	20	.	.	.
cord-325328-3l3jznkj	118	1	Comparison	comparison	NN
cord-325328-3l3jznkj	118	2	of	of	IN
cord-325328-3l3jznkj	118	3	the	the	DT
cord-325328-3l3jznkj	118	4	Aand	Aand	NNP
cord-325328-3l3jznkj	118	5	B	b	NN
cord-325328-3l3jznkj	118	6	-	-	HYPH
cord-325328-3l3jznkj	118	7	type	type	NN
cord-325328-3l3jznkj	118	8	ribonuclease	ribonuclease	NN
cord-325328-3l3jznkj	118	9	P	p	NN
cord-325328-3l3jznkj	118	10	structures	structure	NNS
cord-325328-3l3jznkj	118	11	shows	show	VBZ
cord-325328-3l3jznkj	118	12	that	that	IN
cord-325328-3l3jznkj	118	13	,	,	,
cord-325328-3l3jznkj	118	14	although	although	IN
cord-325328-3l3jznkj	118	15	the	the	DT
cord-325328-3l3jznkj	118	16	secondary	secondary	JJ
cord-325328-3l3jznkj	118	17	and	and	CC
cord-325328-3l3jznkj	118	18	tertiary	tertiary	JJ
cord-325328-3l3jznkj	118	19	structures	structure	NNS
cord-325328-3l3jznkj	118	20	differ	differ	VBP
cord-325328-3l3jznkj	118	21	Structural	structural	JJ
cord-325328-3l3jznkj	118	22	basis	basis	NN
cord-325328-3l3jznkj	118	23	for	for	IN
cord-325328-3l3jznkj	118	24	discriminative	discriminative	JJ
cord-325328-3l3jznkj	118	25	regulation	regulation	NN
cord-325328-3l3jznkj	118	26	of	of	IN
cord-325328-3l3jznkj	118	27	gene	gene	NN
cord-325328-3l3jznkj	118	28	expression	expression	NN
cord-325328-3l3jznkj	118	29	by	by	IN
cord-325328-3l3jznkj	118	30	adenine	adenine	NN
cord-325328-3l3jznkj	118	31	-	-	HYPH
cord-325328-3l3jznkj	118	32	and	and	CC
cord-325328-3l3jznkj	118	33	guanine	guanine	NN
cord-325328-3l3jznkj	118	34	-	-	HYPH
cord-325328-3l3jznkj	118	35	sensing	sensing	NN
cord-325328-3l3jznkj	118	36	mRNAs	mrna	VBD
cord-325328-3l3jznkj	118	37	Crystal	Crystal	NNP
cord-325328-3l3jznkj	118	38	structures	structure	NNS
cord-325328-3l3jznkj	118	39	of	of	IN
cord-325328-3l3jznkj	118	40	guanine	guanine	NN
cord-325328-3l3jznkj	118	41	-	-	HYPH
cord-325328-3l3jznkj	118	42	and	and	CC
cord-325328-3l3jznkj	118	43	adenine	adenine	NN
cord-325328-3l3jznkj	118	44	-	-	HYPH
cord-325328-3l3jznkj	118	45	responsive	responsive	JJ
cord-325328-3l3jznkj	118	46	riboswitches	riboswitche	NNS
cord-325328-3l3jznkj	118	47	are	be	VBP
cord-325328-3l3jznkj	118	48	determined	determine	VBN
cord-325328-3l3jznkj	118	49	.	.	.
cord-325328-3l3jznkj	119	1	These	these	DT
cord-325328-3l3jznkj	119	2	structures	structure	NNS
cord-325328-3l3jznkj	119	3	illustrate	illustrate	VBP
cord-325328-3l3jznkj	119	4	how	how	WRB
cord-325328-3l3jznkj	119	5	the	the	DT
cord-325328-3l3jznkj	119	6	RNAs	rna	NNS
cord-325328-3l3jznkj	119	7	discriminate	discriminate	VBP
cord-325328-3l3jznkj	119	8	between	between	IN
cord-325328-3l3jznkj	119	9	adenine	adenine	NN
cord-325328-3l3jznkj	119	10	and	and	CC
cord-325328-3l3jznkj	119	11	guanine	guanine	NN
cord-325328-3l3jznkj	119	12	,	,	,
cord-325328-3l3jznkj	119	13	and	and	CC
cord-325328-3l3jznkj	119	14	how	how	WRB
cord-325328-3l3jznkj	119	15	they	-PRON-	PRP
cord-325328-3l3jznkj	119	16	perform	perform	VBP
cord-325328-3l3jznkj	119	17	their	-PRON-	PRP$
cord-325328-3l3jznkj	119	18	regulatory	regulatory	JJ
cord-325328-3l3jznkj	119	19	function	function	NN
cord-325328-3l3jznkj	119	20	Structure	Structure	NNP
cord-325328-3l3jznkj	119	21	of	of	IN
cord-325328-3l3jznkj	119	22	a	a	DT
cord-325328-3l3jznkj	119	23	natural	natural	JJ
cord-325328-3l3jznkj	119	24	guanine	guanine	NN
cord-325328-3l3jznkj	119	25	-	-	HYPH
cord-325328-3l3jznkj	119	26	responsive	responsive	JJ
cord-325328-3l3jznkj	119	27	riboswitch	riboswitch	NN
cord-325328-3l3jznkj	119	28	complexed	complexe	VBN
cord-325328-3l3jznkj	119	29	with	with	IN
cord-325328-3l3jznkj	119	30	the	the	DT
cord-325328-3l3jznkj	119	31	metabolite	metabolite	JJ
cord-325328-3l3jznkj	119	32	hypoxanthine	hypoxanthine	NN
cord-325328-3l3jznkj	120	1	The	the	DT
cord-325328-3l3jznkj	120	2	structure	structure	NN
cord-325328-3l3jznkj	120	3	of	of	IN
cord-325328-3l3jznkj	120	4	a	a	DT
cord-325328-3l3jznkj	120	5	rigorously	rigorously	RB
cord-325328-3l3jznkj	120	6	conserved	conserve	VBN
cord-325328-3l3jznkj	120	7	RNA	RNA	NNP
cord-325328-3l3jznkj	120	8	element	element	NN
cord-325328-3l3jznkj	120	9	within	within	IN
cord-325328-3l3jznkj	120	10	the	the	DT
cord-325328-3l3jznkj	120	11	SARS	SARS	NNP
cord-325328-3l3jznkj	120	12	virus	virus	NN
cord-325328-3l3jznkj	120	13	genome	genome	NN
cord-325328-3l3jznkj	121	1	The	the	DT
cord-325328-3l3jznkj	121	2	crystal	crystal	JJ
cord-325328-3l3jznkj	121	3	structure	structure	NN
cord-325328-3l3jznkj	121	4	of	of	IN
cord-325328-3l3jznkj	121	5	a	a	DT
cord-325328-3l3jznkj	121	6	highly	highly	RB
cord-325328-3l3jznkj	121	7	conserved	conserve	VBN
cord-325328-3l3jznkj	121	8	fragment	fragment	NN
cord-325328-3l3jznkj	121	9	of	of	IN
cord-325328-3l3jznkj	121	10	the	the	DT
cord-325328-3l3jznkj	121	11	SARS	SARS	NNP
cord-325328-3l3jznkj	121	12	virus	virus	NN
cord-325328-3l3jznkj	121	13	genome	genome	NN
cord-325328-3l3jznkj	121	14	was	be	VBD
cord-325328-3l3jznkj	121	15	determined	determine	VBN
cord-325328-3l3jznkj	121	16	.	.	.
cord-325328-3l3jznkj	122	1	The	the	DT
cord-325328-3l3jznkj	122	2	structure	structure	NN
cord-325328-3l3jznkj	122	3	shows	show	VBZ
cord-325328-3l3jznkj	122	4	novel	novel	NN
cord-325328-3l3jznkj	122	5	RNA	RNA	NNP
cord-325328-3l3jznkj	122	6	secondary	secondary	JJ
cord-325328-3l3jznkj	122	7	and	and	CC
cord-325328-3l3jznkj	122	8	tertiary	tertiary	JJ
cord-325328-3l3jznkj	122	9	structure	structure	NN
cord-325328-3l3jznkj	122	10	elements	element	NNS
cord-325328-3l3jznkj	122	11	Crystal	Crystal	NNP
cord-325328-3l3jznkj	122	12	structure	structure	NN
cord-325328-3l3jznkj	122	13	of	of	IN
cord-325328-3l3jznkj	122	14	NF	NF	NNP
cord-325328-3l3jznkj	122	15	-	-	HYPH
cord-325328-3l3jznkj	122	16	kappaB	kappaB	NNP
cord-325328-3l3jznkj	122	17	(	(	-LRB-
cord-325328-3l3jznkj	122	18	p50)2	p50)2	RB
cord-325328-3l3jznkj	122	19	complexed	complexed	JJ
cord-325328-3l3jznkj	122	20	to	to	IN
cord-325328-3l3jznkj	122	21	a	a	DT
cord-325328-3l3jznkj	122	22	high	high	JJ
cord-325328-3l3jznkj	122	23	-	-	HYPH
cord-325328-3l3jznkj	122	24	affinity	affinity	NN
cord-325328-3l3jznkj	122	25	RNA	RNA	NNP
cord-325328-3l3jznkj	122	26	aptamer	aptamer	NNP
cord-325328-3l3jznkj	122	27	Structure	Structure	NNP
cord-325328-3l3jznkj	122	28	of	of	IN
cord-325328-3l3jznkj	122	29	protein	protein	NN
cord-325328-3l3jznkj	122	30	L7Ae	L7Ae	NNP
cord-325328-3l3jznkj	122	31	bound	bind	VBN
cord-325328-3l3jznkj	122	32	to	to	IN
cord-325328-3l3jznkj	122	33	a	a	DT
cord-325328-3l3jznkj	122	34	K	k	NN
cord-325328-3l3jznkj	122	35	-	-	HYPH
cord-325328-3l3jznkj	122	36	turn	turn	NN
cord-325328-3l3jznkj	122	37	derived	derive	VBN
cord-325328-3l3jznkj	122	38	from	from	IN
cord-325328-3l3jznkj	122	39	an	an	DT
cord-325328-3l3jznkj	122	40	archaeal	archaeal	JJ
cord-325328-3l3jznkj	122	41	box	box	NN
cord-325328-3l3jznkj	122	42	H	H	NNP
cord-325328-3l3jznkj	122	43	/	/	SYM
cord-325328-3l3jznkj	122	44	ACA	ACA	NNP
cord-325328-3l3jznkj	123	1	sRNA	sRNA	VBG
cord-325328-3l3jznkj	123	2	at	at	IN
cord-325328-3l3jznkj	123	3	1.8Å	1.8å	JJ
cord-325328-3l3jznkj	123	4	resolution	resolution	NN
cord-325328-3l3jznkj	124	1	A	a	DT
cord-325328-3l3jznkj	124	2	conformational	conformational	JJ
cord-325328-3l3jznkj	124	3	switch	switch	NN
cord-325328-3l3jznkj	124	4	controls	control	NNS
cord-325328-3l3jznkj	124	5	hepatitis	hepatitis	NNP
cord-325328-3l3jznkj	124	6	delta	delta	NNP
cord-325328-3l3jznkj	124	7	virus	virus	NN
cord-325328-3l3jznkj	124	8	ribozyme	ribozyme	NNP
cord-325328-3l3jznkj	124	9	catalysis	catalysis	NNP
cord-325328-3l3jznkj	124	10	Crystal	Crystal	NNP
cord-325328-3l3jznkj	124	11	structure	structure	NN
cord-325328-3l3jznkj	124	12	of	of	IN
cord-325328-3l3jznkj	124	13	a	a	DT
cord-325328-3l3jznkj	124	14	hepatitis	hepatitis	NN
cord-325328-3l3jznkj	124	15	delta	delta	NN
cord-325328-3l3jznkj	124	16	virus	virus	NN
cord-325328-3l3jznkj	124	17	ribozyme	ribozyme	NN
cord-325328-3l3jznkj	124	18	High	high	JJ
cord-325328-3l3jznkj	124	19	salt	salt	NN
cord-325328-3l3jznkj	124	20	solution	solution	NN
cord-325328-3l3jznkj	124	21	structure	structure	NN
cord-325328-3l3jznkj	124	22	of	of	IN
cord-325328-3l3jznkj	124	23	a	a	DT
cord-325328-3l3jznkj	124	24	left	left	JJ
cord-325328-3l3jznkj	124	25	-	-	HYPH
cord-325328-3l3jznkj	124	26	handed	handed	JJ
cord-325328-3l3jznkj	124	27	RNA	RNA	NNP
cord-325328-3l3jznkj	124	28	double	double	JJ
cord-325328-3l3jznkj	124	29	helix	helix	NN
cord-325328-3l3jznkj	124	30	Betzel	Betzel	NNP
cord-325328-3l3jznkj	124	31	C	C	NNP
cord-325328-3l3jznkj	124	32	:	:	:
cord-325328-3l3jznkj	125	1	First	first	RB
cord-325328-3l3jznkj	125	2	look	look	NN
cord-325328-3l3jznkj	125	3	at	at	IN
cord-325328-3l3jznkj	125	4	RNA	RNA	NNP
cord-325328-3l3jznkj	125	5	in	in	IN
cord-325328-3l3jznkj	125	6	L	l	NN
cord-325328-3l3jznkj	125	7	-	-	HYPH
cord-325328-3l3jznkj	125	8	configuration	configuration	NN
cord-325328-3l3jznkj	125	9	Alternative	alternative	JJ
cord-325328-3l3jznkj	125	10	tertiary	tertiary	JJ
cord-325328-3l3jznkj	125	11	structure	structure	NN
cord-325328-3l3jznkj	125	12	of	of	IN
cord-325328-3l3jznkj	125	13	tRNA	tRNA	NNP
cord-325328-3l3jznkj	125	14	for	for	IN
cord-325328-3l3jznkj	125	15	recognition	recognition	NN
cord-325328-3l3jznkj	125	16	by	by	IN
cord-325328-3l3jznkj	125	17	a	a	DT
cord-325328-3l3jznkj	125	18	posttranscriptional	posttranscriptional	JJ
cord-325328-3l3jznkj	125	19	modification	modification	NN
cord-325328-3l3jznkj	125	20	enzyme	enzyme	NN
cord-325328-3l3jznkj	125	21	tRNA	tRNA	NNP
cord-325328-3l3jznkj	125	22	structure	structure	NN
cord-325328-3l3jznkj	125	23	goes	go	VBZ
cord-325328-3l3jznkj	125	24	from	from	IN
cord-325328-3l3jznkj	125	25	L	L	NNP
cord-325328-3l3jznkj	125	26	to	to	TO
cord-325328-3l3jznkj	125	27	lambda	lambda	NN
cord-325328-3l3jznkj	125	28	NCIR	NCIR	NNP
cord-325328-3l3jznkj	125	29	:	:	:
cord-325328-3l3jznkj	125	30	a	a	DT
cord-325328-3l3jznkj	125	31	database	database	NN
cord-325328-3l3jznkj	125	32	of	of	IN
cord-325328-3l3jznkj	125	33	non	non	JJ
cord-325328-3l3jznkj	125	34	-	-	JJ
cord-325328-3l3jznkj	125	35	canonical	canonical	JJ
cord-325328-3l3jznkj	125	36	interactions	interaction	NNS
cord-325328-3l3jznkj	125	37	in	in	IN
cord-325328-3l3jznkj	125	38	known	know	VBN
cord-325328-3l3jznkj	125	39	RNA	RNA	NNP
cord-325328-3l3jznkj	125	40	structures	structure	NNS
cord-325328-3l3jznkj	125	41	Tools	tool	NNS
cord-325328-3l3jznkj	125	42	for	for	IN
cord-325328-3l3jznkj	125	43	the	the	DT
cord-325328-3l3jznkj	125	44	automatic	automatic	JJ
cord-325328-3l3jznkj	125	45	identification	identification	NN
cord-325328-3l3jznkj	125	46	and	and	CC
cord-325328-3l3jznkj	125	47	classification	classification	NN
cord-325328-3l3jznkj	125	48	of	of	IN
cord-325328-3l3jznkj	125	49	RNA	RNA	NNP
cord-325328-3l3jznkj	125	50	base	base	NN
cord-325328-3l3jznkj	125	51	pairs	pair	NNS
cord-325328-3l3jznkj	125	52	RNA	RNA	NNP
cord-325328-3l3jznkj	125	53	structure	structure	NN
cord-325328-3l3jznkj	125	54	comparison	comparison	NN
cord-325328-3l3jznkj	125	55	,	,	,
cord-325328-3l3jznkj	125	56	motif	motif	NN
cord-325328-3l3jznkj	125	57	search	search	NN
cord-325328-3l3jznkj	125	58	and	and	CC
cord-325328-3l3jznkj	125	59	discovery	discovery	NN
cord-325328-3l3jznkj	125	60	using	use	VBG
cord-325328-3l3jznkj	125	61	a	a	DT
cord-325328-3l3jznkj	125	62	reduced	reduce	VBN
cord-325328-3l3jznkj	125	63	representation	representation	NN
cord-325328-3l3jznkj	125	64	of	of	IN
cord-325328-3l3jznkj	125	65	RNA	RNA	NNP
cord-325328-3l3jznkj	125	66	conformational	conformational	JJ
cord-325328-3l3jznkj	125	67	space	space	NN
cord-325328-3l3jznkj	126	1	The	the	DT
cord-325328-3l3jznkj	126	2	identification	identification	NN
cord-325328-3l3jznkj	126	3	of	of	IN
cord-325328-3l3jznkj	126	4	novel	novel	NN
cord-325328-3l3jznkj	126	5	RNA	RNA	NNP
cord-325328-3l3jznkj	126	6	structural	structural	JJ
cord-325328-3l3jznkj	126	7	motifs	motif	NNS
cord-325328-3l3jznkj	126	8	using	use	VBG
cord-325328-3l3jznkj	126	9	COMPADRES	COMPADRES	NNP
cord-325328-3l3jznkj	126	10	:	:	:
cord-325328-3l3jznkj	126	11	an	an	DT
cord-325328-3l3jznkj	126	12	automated	automated	JJ
cord-325328-3l3jznkj	126	13	approach	approach	NN
cord-325328-3l3jznkj	126	14	to	to	IN
cord-325328-3l3jznkj	126	15	structural	structural	JJ
cord-325328-3l3jznkj	126	16	discovery	discovery	NN
cord-325328-3l3jznkj	126	17	Motif	Motif	NNP
cord-325328-3l3jznkj	126	18	prediction	prediction	NN
cord-325328-3l3jznkj	126	19	in	in	IN
cord-325328-3l3jznkj	126	20	ribosomal	ribosomal	JJ
cord-325328-3l3jznkj	126	21	RNAs	rna	NNS
cord-325328-3l3jznkj	126	22	.	.	.
cord-325328-3l3jznkj	127	1	Lessons	lesson	NNS
cord-325328-3l3jznkj	127	2	and	and	CC
cord-325328-3l3jznkj	127	3	prospects	prospect	NNS
cord-325328-3l3jznkj	127	4	for	for	IN
cord-325328-3l3jznkj	127	5	automated	automated	JJ
cord-325328-3l3jznkj	127	6	motif	motif	NN
cord-325328-3l3jznkj	127	7	prediction	prediction	NN
cord-325328-3l3jznkj	127	8	in	in	IN
cord-325328-3l3jznkj	127	9	homologous	homologous	JJ
cord-325328-3l3jznkj	127	10	RNA	RNA	NNP
cord-325328-3l3jznkj	127	11	molecules	molecule	NNS
cord-325328-3l3jznkj	127	12	SCOR	SCOR	NNP
cord-325328-3l3jznkj	127	13	:	:	:
cord-325328-3l3jznkj	128	1	Structural	Structural	NNP
cord-325328-3l3jznkj	128	2	Classification	Classification	NNP
cord-325328-3l3jznkj	128	3	of	of	IN
cord-325328-3l3jznkj	128	4	RNA	RNA	NNP
cord-325328-3l3jznkj	128	5	,	,	,
cord-325328-3l3jznkj	128	6	version	version	NN
cord-325328-3l3jznkj	128	7	2.0	2.0	CD
cord-325328-3l3jznkj	128	8	Three	three	CD
cord-325328-3l3jznkj	128	9	-	-	HYPH
cord-325328-3l3jznkj	128	10	dimensional	dimensional	JJ
cord-325328-3l3jznkj	128	11	motifs	motif	NNS
cord-325328-3l3jznkj	128	12	from	from	IN
cord-325328-3l3jznkj	128	13	the	the	DT
cord-325328-3l3jznkj	128	14	SCOR	SCOR	NNP
cord-325328-3l3jznkj	128	15	,	,	,
cord-325328-3l3jznkj	128	16	structural	structural	JJ
cord-325328-3l3jznkj	128	17	classification	classification	NN
cord-325328-3l3jznkj	128	18	of	of	IN
cord-325328-3l3jznkj	128	19	RNA	RNA	NNP
cord-325328-3l3jznkj	128	20	database	database	NN
cord-325328-3l3jznkj	128	21	:	:	:
cord-325328-3l3jznkj	128	22	extruded	extruded	JJ
cord-325328-3l3jznkj	128	23	strands	strand	NNS
cord-325328-3l3jznkj	128	24	,	,	,
cord-325328-3l3jznkj	128	25	base	base	NN
cord-325328-3l3jznkj	128	26	triples	triple	NNS
cord-325328-3l3jznkj	128	27	,	,	,
cord-325328-3l3jznkj	128	28	tetraloops	tetraloop	NNS
cord-325328-3l3jznkj	128	29	and	and	CC
cord-325328-3l3jznkj	128	30	U	U	NNP
cord-325328-3l3jznkj	128	31	-	-	HYPH
cord-325328-3l3jznkj	128	32	turns	turn	NNS
cord-325328-3l3jznkj	128	33	)	)	-RRB-
cord-325328-3l3jznkj	128	34	is	be	VBZ
cord-325328-3l3jznkj	128	35	a	a	DT
cord-325328-3l3jznkj	128	36	compilation	compilation	NN
cord-325328-3l3jznkj	128	37	and	and	CC
cord-325328-3l3jznkj	128	38	classification	classification	NN
cord-325328-3l3jznkj	128	39	of	of	IN
cord-325328-3l3jznkj	128	40	RNA	RNA	NNP
cord-325328-3l3jznkj	128	41	secondary	secondary	JJ
cord-325328-3l3jznkj	128	42	and	and	CC
cord-325328-3l3jznkj	128	43	tertiary	tertiary	JJ
cord-325328-3l3jznkj	128	44	motifs	motif	NNS
cord-325328-3l3jznkj	128	45	.	.	.
cord-325328-3l3jznkj	129	1	Several	several	JJ
cord-325328-3l3jznkj	129	2	new	new	JJ
cord-325328-3l3jznkj	129	3	motifs	motif	NNS
cord-325328-3l3jznkj	129	4	are	be	VBP
cord-325328-3l3jznkj	129	5	identified	identify	VBN
cord-325328-3l3jznkj	129	6	in	in	IN
cord-325328-3l3jznkj	129	7	the	the	DT
cord-325328-3l3jznkj	129	8	database	database	NN
cord-325328-3l3jznkj	129	9	and	and	CC
cord-325328-3l3jznkj	129	10	described	describe	VBN
cord-325328-3l3jznkj	129	11	in	in	IN
cord-325328-3l3jznkj	129	12	this	this	DT
cord-325328-3l3jznkj	129	13	article	article	NN
cord-325328-3l3jznkj	129	14	TectoRNA	tectorna	IN
cord-325328-3l3jznkj	129	15	:	:	:
cord-325328-3l3jznkj	129	16	modular	modular	NNP
cord-325328-3l3jznkj	129	17	assembly	assembly	NN
cord-325328-3l3jznkj	129	18	units	unit	NNS
cord-325328-3l3jznkj	129	19	for	for	IN
cord-325328-3l3jznkj	129	20	the	the	DT
cord-325328-3l3jznkj	129	21	construction	construction	NN
cord-325328-3l3jznkj	129	22	of	of	IN
cord-325328-3l3jznkj	129	23	RNA	RNA	NNP
cord-325328-3l3jznkj	129	24	nano	nano	NN
cord-325328-3l3jznkj	129	25	-	-	HYPH
cord-325328-3l3jznkj	129	26	objects	object	NNS
cord-325328-3l3jznkj	129	27	Building	Building	NNP
cord-325328-3l3jznkj	129	28	programmable	programmable	JJ
cord-325328-3l3jznkj	129	29	jigsaw	jigsaw	NN
cord-325328-3l3jznkj	129	30	puzzles	puzzle	NNS
cord-325328-3l3jznkj	129	31	with	with	IN
cord-325328-3l3jznkj	129	32	RNA	RNA	NNP
cord-325328-3l3jznkj	129	33	Self	Self	NNP
cord-325328-3l3jznkj	129	34	-	-	HYPH
cord-325328-3l3jznkj	129	35	assembling	assemble	VBG
cord-325328-3l3jznkj	129	36	RNA	RNA	NNP
cord-325328-3l3jznkj	129	37	building	building	NN
cord-325328-3l3jznkj	129	38	blocks	block	NNS
cord-325328-3l3jznkj	129	39	were	be	VBD
cord-325328-3l3jznkj	129	40	used	use	VBN
cord-325328-3l3jznkj	129	41	to	to	TO
cord-325328-3l3jznkj	129	42	generate	generate	VB
cord-325328-3l3jznkj	129	43	defined	define	VBN
cord-325328-3l3jznkj	129	44	structures	structure	NNS
cord-325328-3l3jznkj	129	45	termed	term	VBD
cord-325328-3l3jznkj	129	46	tectosquares	tectosquare	NNS
cord-325328-3l3jznkj	129	47	.	.	.
cord-325328-3l3jznkj	130	1	This	this	DT
cord-325328-3l3jznkj	130	2	illustrates	illustrate	VBZ
cord-325328-3l3jznkj	130	3	the	the	DT
cord-325328-3l3jznkj	130	4	modularity	modularity	NN
cord-325328-3l3jznkj	130	5	of	of	IN
cord-325328-3l3jznkj	130	6	RNA	RNA	NNP
cord-325328-3l3jznkj	130	7	,	,	,
cord-325328-3l3jznkj	130	8	the	the	DT
cord-325328-3l3jznkj	130	9	ability	ability	NN
cord-325328-3l3jznkj	130	10	to	to	TO
cord-325328-3l3jznkj	130	11	use	use	VB
cord-325328-3l3jznkj	130	12	known	know	VBN
cord-325328-3l3jznkj	130	13	structural	structural	JJ
cord-325328-3l3jznkj	130	14	motifs	motif	NNS
cord-325328-3l3jznkj	130	15	to	to	TO
cord-325328-3l3jznkj	130	16	design	design	VB
cord-325328-3l3jznkj	130	17	building	building	NN
cord-325328-3l3jznkj	130	18	blocks	block	NNS
cord-325328-3l3jznkj	130	19	and	and	CC
cord-325328-3l3jznkj	130	20	the	the	DT
cord-325328-3l3jznkj	130	21	potential	potential	NN
cord-325328-3l3jznkj	130	22	of	of	IN
cord-325328-3l3jznkj	130	23	RNA	RNA	NNP
cord-325328-3l3jznkj	130	24	in	in	IN
cord-325328-3l3jznkj	130	25	nanotechnology	nanotechnology	NN
cord-325328-3l3jznkj	131	1	A	a	DT
cord-325328-3l3jznkj	131	2	computational	computational	JJ
cord-325328-3l3jznkj	131	3	approach	approach	NN
cord-325328-3l3jznkj	131	4	to	to	TO
cord-325328-3l3jznkj	131	5	identify	identify	VB
cord-325328-3l3jznkj	131	6	genes	gene	NNS
cord-325328-3l3jznkj	131	7	for	for	IN
cord-325328-3l3jznkj	131	8	functional	functional	JJ
cord-325328-3l3jznkj	131	9	RNAs	rna	NNS
cord-325328-3l3jznkj	131	10	in	in	IN
cord-325328-3l3jznkj	131	11	genomic	genomic	JJ
cord-325328-3l3jznkj	131	12	sequences	sequence	NNS
cord-325328-3l3jznkj	131	13	Mfold	Mfold	NNP
cord-325328-3l3jznkj	131	14	web	web	NN
cord-325328-3l3jznkj	131	15	server	server	NN
cord-325328-3l3jznkj	131	16	for	for	IN
cord-325328-3l3jznkj	131	17	nucleic	nucleic	JJ
cord-325328-3l3jznkj	131	18	acid	acid	NN
cord-325328-3l3jznkj	131	19	folding	folding	NN
cord-325328-3l3jznkj	131	20	and	and	CC
cord-325328-3l3jznkj	131	21	hybridization	hybridization	NN
cord-325328-3l3jznkj	131	22	prediction	prediction	NN
cord-325328-3l3jznkj	132	1	Vienna	Vienna	NNP
cord-325328-3l3jznkj	132	2	RNA	RNA	NNP
cord-325328-3l3jznkj	132	3	secondary	secondary	JJ
cord-325328-3l3jznkj	132	4	structure	structure	NN
cord-325328-3l3jznkj	132	5	server	server	NN
cord-325328-3l3jznkj	132	6	Secondary	secondary	JJ
cord-325328-3l3jznkj	132	7	structure	structure	NN
cord-325328-3l3jznkj	132	8	prediction	prediction	NN
cord-325328-3l3jznkj	132	9	for	for	IN
cord-325328-3l3jznkj	132	10	aligned	align	VBN
cord-325328-3l3jznkj	132	11	RNA	RNA	NNP
cord-325328-3l3jznkj	132	12	sequences	sequence	NNS
cord-325328-3l3jznkj	132	13	Sequence	sequence	NN
cord-325328-3l3jznkj	132	14	and	and	CC
cord-325328-3l3jznkj	132	15	structural	structural	JJ
cord-325328-3l3jznkj	132	16	conservation	conservation	NN
cord-325328-3l3jznkj	132	17	in	in	IN
cord-325328-3l3jznkj	132	18	RNA	RNA	NNP
cord-325328-3l3jznkj	132	19	ribose	ribose	NN
cord-325328-3l3jznkj	132	20	zippers	zipper	NNS
cord-325328-3l3jznkj	132	21	Paradigms	Paradigms	NNPS
cord-325328-3l3jznkj	132	22	for	for	IN
cord-325328-3l3jznkj	132	23	computational	computational	JJ
cord-325328-3l3jznkj	132	24	nucleic	nucleic	JJ
cord-325328-3l3jznkj	132	25	acid	acid	NN
cord-325328-3l3jznkj	132	26	design	design	NN
cord-325328-3l3jznkj	132	27	Kissing	kiss	VBG
cord-325328-3l3jznkj	132	28	complex	complex	JJ
cord-325328-3l3jznkj	132	29	RNAs	rna	NNS
cord-325328-3l3jznkj	132	30	mediate	mediate	VBP
cord-325328-3l3jznkj	132	31	interaction	interaction	NN
cord-325328-3l3jznkj	132	32	between	between	IN
cord-325328-3l3jznkj	132	33	the	the	DT
cord-325328-3l3jznkj	132	34	Fragile	Fragile	NNP
cord-325328-3l3jznkj	132	35	-	-	HYPH
cord-325328-3l3jznkj	132	36	X	x	NN
cord-325328-3l3jznkj	132	37	mental	mental	JJ
cord-325328-3l3jznkj	132	38	retardation	retardation	NN
cord-325328-3l3jznkj	132	39	protein	protein	NN
cord-325328-3l3jznkj	132	40	KH2	KH2	NNP
cord-325328-3l3jznkj	132	41	domain	domain	NN
cord-325328-3l3jznkj	132	42	and	and	CC
cord-325328-3l3jznkj	132	43	brain	brain	NN
cord-325328-3l3jznkj	132	44	polyribosomes	polyribosome	NNS
cord-325328-3l3jznkj	133	1	Lead	lead	VB
cord-325328-3l3jznkj	133	2	toxicity	toxicity	NN
cord-325328-3l3jznkj	133	3	through	through	IN
cord-325328-3l3jznkj	133	4	the	the	DT
cord-325328-3l3jznkj	133	5	leadzyme	leadzyme	NNP
cord-325328-3l3jznkj	133	6	RNA	RNA	NNP
cord-325328-3l3jznkj	133	7	structure	structure	NN
cord-325328-3l3jznkj	133	8	of	of	IN
cord-325328-3l3jznkj	133	9	trinucleotide	trinucleotide	NNP
cord-325328-3l3jznkj	133	10	repeats	repeat	VBZ
cord-325328-3l3jznkj	133	11	associated	associate	VBN
cord-325328-3l3jznkj	133	12	with	with	IN
cord-325328-3l3jznkj	133	13	human	human	JJ
cord-325328-3l3jznkj	133	14	diseases	disease	NNS
cord-325328-3l3jznkj	133	15	Molecular	Molecular	NNP
cord-325328-3l3jznkj	133	16	architecture	architecture	NN
cord-325328-3l3jznkj	133	17	of	of	IN
cord-325328-3l3jznkj	133	18	CAG	CAG	NNP
cord-325328-3l3jznkj	133	19	repeats	repeat	VBZ
cord-325328-3l3jznkj	133	20	in	in	IN
cord-325328-3l3jznkj	133	21	human	human	JJ
cord-325328-3l3jznkj	133	22	disease	disease	NN
cord-325328-3l3jznkj	133	23	related	relate	VBN
cord-325328-3l3jznkj	133	24	transcripts	transcript	NNS
cord-325328-3l3jznkj	134	1	The	the	DT
cord-325328-3l3jznkj	134	2	author	author	NN
cord-325328-3l3jznkj	134	3	acknowledges	acknowledge	VBZ
cord-325328-3l3jznkj	134	4	Jasmin	Jasmin	NNP
cord-325328-3l3jznkj	134	5	Yang	Yang	NNP
cord-325328-3l3jznkj	134	6	of	of	IN
cord-325328-3l3jznkj	134	7	the	the	DT
cord-325328-3l3jznkj	134	8	NDB	ndb	NN
cord-325328-3l3jznkj	134	9	,	,	,
cord-325328-3l3jznkj	134	10	and	and	CC
cord-325328-3l3jznkj	134	11	Donna	Donna	NNP
cord-325328-3l3jznkj	134	12	Hendrix	Hendrix	NNP
cord-325328-3l3jznkj	134	13	and	and	CC
cord-325328-3l3jznkj	134	14	Elizabeth	Elizabeth	NNP
cord-325328-3l3jznkj	134	15	Holbrook	Holbrook	NNP
cord-325328-3l3jznkj	134	16	of	of	IN
cord-325328-3l3jznkj	134	17	UC	UC	NNP
cord-325328-3l3jznkj	134	18	Berkeley	Berkeley	NNP
cord-325328-3l3jznkj	134	19	for	for	IN
cord-325328-3l3jznkj	134	20	assistance	assistance	NN
cord-325328-3l3jznkj	134	21	in	in	IN
cord-325328-3l3jznkj	134	22	the	the	DT
cord-325328-3l3jznkj	134	23	preparation	preparation	NN
cord-325328-3l3jznkj	134	24	of	of	IN
cord-325328-3l3jznkj	134	25	this	this	DT
cord-325328-3l3jznkj	134	26	manuscript	manuscript	NN
cord-325328-3l3jznkj	134	27	.	.	.
cord-325328-3l3jznkj	135	1	SRH	SRH	NNP
cord-325328-3l3jznkj	135	2	was	be	VBD
cord-325328-3l3jznkj	135	3	supported	support	VBN
cord-325328-3l3jznkj	135	4	by	by	IN
cord-325328-3l3jznkj	135	5	National	National	NNP
cord-325328-3l3jznkj	135	6	Institutes	Institutes	NNPS
cord-325328-3l3jznkj	135	7	of	of	IN
cord-325328-3l3jznkj	135	8	Health	Health	NNP
cord-325328-3l3jznkj	135	9	grants	grant	VBZ
cord-325328-3l3jznkj	135	10	1R01GM66199	1r01gm66199	CD
cord-325328-3l3jznkj	135	11	and	and	CC
cord-325328-3l3jznkj	135	12	1R01HG002665	1r01hg002665	CD
cord-325328-3l3jznkj	135	13	.	.	.