id sid tid token lemma pos cord-264489-h1n9ywbd 1 1 key key JJ cord-264489-h1n9ywbd 1 2 : : : cord-264489-h1n9ywbd 1 3 cord-264489-h1n9ywbd cord-264489-h1n9ywbd NN cord-264489-h1n9ywbd 1 4 authors author NNS cord-264489-h1n9ywbd 1 5 : : : cord-264489-h1n9ywbd 1 6 Roy Roy NNP cord-264489-h1n9ywbd 1 7 , , , cord-264489-h1n9ywbd 1 8 Urmi Urmi NNP cord-264489-h1n9ywbd 1 9 title title NN cord-264489-h1n9ywbd 1 10 : : : cord-264489-h1n9ywbd 1 11 Insight insight NN cord-264489-h1n9ywbd 1 12 into into IN cord-264489-h1n9ywbd 1 13 the the DT cord-264489-h1n9ywbd 1 14 Structures structure NNS cord-264489-h1n9ywbd 1 15 of of IN cord-264489-h1n9ywbd 1 16 Interleukin-18 Interleukin-18 NNP cord-264489-h1n9ywbd 1 17 Systems Systems NNPS cord-264489-h1n9ywbd 1 18 date date NN cord-264489-h1n9ywbd 1 19 : : : cord-264489-h1n9ywbd 1 20 2020 2020 CD cord-264489-h1n9ywbd 1 21 - - HYPH cord-264489-h1n9ywbd 1 22 07 07 CD cord-264489-h1n9ywbd 1 23 - - HYPH cord-264489-h1n9ywbd 1 24 31 31 CD cord-264489-h1n9ywbd 1 25 journal journal NN cord-264489-h1n9ywbd 1 26 : : : cord-264489-h1n9ywbd 1 27 Comput Comput NNP cord-264489-h1n9ywbd 1 28 Biol Biol NNP cord-264489-h1n9ywbd 1 29 Chem Chem NNP cord-264489-h1n9ywbd 1 30 DOI doi NN cord-264489-h1n9ywbd 1 31 : : : cord-264489-h1n9ywbd 1 32 10.1016/ 10.1016/ CD cord-264489-h1n9ywbd 2 1 j.compbiolchem.2020.107353 j.compbiolchem.2020.107353 NNP cord-264489-h1n9ywbd 2 2 sha sha NNP cord-264489-h1n9ywbd 2 3 : : : cord-264489-h1n9ywbd 2 4 19ef280db71285b08d15f8e315960a095a0e55ed 19ef280db71285b08d15f8e315960a095a0e55ed CD cord-264489-h1n9ywbd 2 5 doc_id doc_id CD cord-264489-h1n9ywbd 2 6 : : : cord-264489-h1n9ywbd 2 7 264489 264489 CD cord-264489-h1n9ywbd 2 8 cord_uid cord_uid NNS cord-264489-h1n9ywbd 2 9 : : : cord-264489-h1n9ywbd 3 1 h1n9ywbd h1n9ywbd NNP cord-264489-h1n9ywbd 3 2 Structure structure NN cord-264489-h1n9ywbd 3 3 - - HYPH cord-264489-h1n9ywbd 3 4 based base VBN cord-264489-h1n9ywbd 3 5 molecular molecular JJ cord-264489-h1n9ywbd 3 6 designs design NNS cord-264489-h1n9ywbd 3 7 play play VBP cord-264489-h1n9ywbd 3 8 a a DT cord-264489-h1n9ywbd 3 9 critical critical JJ cord-264489-h1n9ywbd 3 10 role role NN cord-264489-h1n9ywbd 3 11 in in IN cord-264489-h1n9ywbd 3 12 the the DT cord-264489-h1n9ywbd 3 13 context context NN cord-264489-h1n9ywbd 3 14 of of IN cord-264489-h1n9ywbd 3 15 next next JJ cord-264489-h1n9ywbd 3 16 generation generation NN cord-264489-h1n9ywbd 3 17 drug drug NN cord-264489-h1n9ywbd 3 18 development development NN cord-264489-h1n9ywbd 3 19 . . . cord-264489-h1n9ywbd 4 1 Besides besides IN cord-264489-h1n9ywbd 4 2 their -PRON- PRP$ cord-264489-h1n9ywbd 4 3 fundamental fundamental JJ cord-264489-h1n9ywbd 4 4 scientific scientific JJ cord-264489-h1n9ywbd 4 5 aspects aspect NNS cord-264489-h1n9ywbd 4 6 , , , cord-264489-h1n9ywbd 4 7 the the DT cord-264489-h1n9ywbd 4 8 findings finding NNS cord-264489-h1n9ywbd 4 9 established establish VBN cord-264489-h1n9ywbd 4 10 in in IN cord-264489-h1n9ywbd 4 11 this this DT cord-264489-h1n9ywbd 4 12 approach approach NN cord-264489-h1n9ywbd 4 13 have have VBP cord-264489-h1n9ywbd 4 14 significant significant JJ cord-264489-h1n9ywbd 4 15 implications implication NNS cord-264489-h1n9ywbd 4 16 in in IN cord-264489-h1n9ywbd 4 17 the the DT cord-264489-h1n9ywbd 4 18 expansions expansion NNS cord-264489-h1n9ywbd 4 19 of of IN cord-264489-h1n9ywbd 4 20 target target NN cord-264489-h1n9ywbd 4 21 - - HYPH cord-264489-h1n9ywbd 4 22 based base VBN cord-264489-h1n9ywbd 4 23 therapies therapy NNS cord-264489-h1n9ywbd 4 24 and and CC cord-264489-h1n9ywbd 4 25 vaccines vaccine NNS cord-264489-h1n9ywbd 4 26 . . . cord-264489-h1n9ywbd 5 1 Interleukin-18 Interleukin-18 NNP cord-264489-h1n9ywbd 5 2 ( ( -LRB- cord-264489-h1n9ywbd 5 3 IL-18 IL-18 NNP cord-264489-h1n9ywbd 5 4 ) ) -RRB- cord-264489-h1n9ywbd 5 5 , , , cord-264489-h1n9ywbd 5 6 also also RB cord-264489-h1n9ywbd 5 7 known know VBN cord-264489-h1n9ywbd 5 8 as as IN cord-264489-h1n9ywbd 5 9 interferon interferon NN cord-264489-h1n9ywbd 5 10 gamma gamma NN cord-264489-h1n9ywbd 5 11 ( ( -LRB- cord-264489-h1n9ywbd 5 12 IFN IFN NNP cord-264489-h1n9ywbd 5 13 - - HYPH cord-264489-h1n9ywbd 5 14 γ γ NNP cord-264489-h1n9ywbd 5 15 ) ) -RRB- cord-264489-h1n9ywbd 5 16 inducing induce VBG cord-264489-h1n9ywbd 5 17 factor factor NN cord-264489-h1n9ywbd 5 18 , , , cord-264489-h1n9ywbd 5 19 is be VBZ cord-264489-h1n9ywbd 5 20 a a DT cord-264489-h1n9ywbd 5 21 pro pro JJ cord-264489-h1n9ywbd 5 22 - - JJ cord-264489-h1n9ywbd 5 23 inflammatory inflammatory JJ cord-264489-h1n9ywbd 5 24 cytokine cytokine NN cord-264489-h1n9ywbd 5 25 . . . cord-264489-h1n9ywbd 6 1 The the DT cord-264489-h1n9ywbd 6 2 IL-18 IL-18 NNP cord-264489-h1n9ywbd 6 3 binds bind VBZ cord-264489-h1n9ywbd 6 4 first first RB cord-264489-h1n9ywbd 6 5 to to IN cord-264489-h1n9ywbd 6 6 the the DT cord-264489-h1n9ywbd 6 7 IL-18α IL-18α NNP cord-264489-h1n9ywbd 6 8 receptor receptor NN cord-264489-h1n9ywbd 6 9 and and CC cord-264489-h1n9ywbd 6 10 forms form VBZ cord-264489-h1n9ywbd 6 11 a a DT cord-264489-h1n9ywbd 6 12 lower low JJR cord-264489-h1n9ywbd 6 13 affinity affinity NN cord-264489-h1n9ywbd 6 14 complex complex NN cord-264489-h1n9ywbd 6 15 . . . cord-264489-h1n9ywbd 7 1 Upon upon IN cord-264489-h1n9ywbd 7 2 binding bind VBG cord-264489-h1n9ywbd 7 3 with with IN cord-264489-h1n9ywbd 7 4 IL-18β IL-18β NNP cord-264489-h1n9ywbd 7 5 a a DT cord-264489-h1n9ywbd 7 6 hetero hetero JJ cord-264489-h1n9ywbd 7 7 - - JJ cord-264489-h1n9ywbd 7 8 trimeric trimeric JJ cord-264489-h1n9ywbd 7 9 complex complex NN cord-264489-h1n9ywbd 7 10 with with IN cord-264489-h1n9ywbd 7 11 higher high JJR cord-264489-h1n9ywbd 7 12 affinity affinity NN cord-264489-h1n9ywbd 7 13 is be VBZ cord-264489-h1n9ywbd 7 14 formed form VBN cord-264489-h1n9ywbd 7 15 that that WDT cord-264489-h1n9ywbd 7 16 initiates initiate VBZ cord-264489-h1n9ywbd 7 17 the the DT cord-264489-h1n9ywbd 7 18 signal signal NN cord-264489-h1n9ywbd 7 19 transduction transduction NN cord-264489-h1n9ywbd 7 20 process process NN cord-264489-h1n9ywbd 7 21 . . . cord-264489-h1n9ywbd 8 1 The the DT cord-264489-h1n9ywbd 8 2 present present JJ cord-264489-h1n9ywbd 8 3 study study NN cord-264489-h1n9ywbd 8 4 , , , cord-264489-h1n9ywbd 8 5 including include VBG cord-264489-h1n9ywbd 8 6 structural structural JJ cord-264489-h1n9ywbd 8 7 and and CC cord-264489-h1n9ywbd 8 8 molecular molecular JJ cord-264489-h1n9ywbd 8 9 dynamics dynamic NNS cord-264489-h1n9ywbd 8 10 simulations simulation NNS cord-264489-h1n9ywbd 8 11 , , , cord-264489-h1n9ywbd 8 12 takes take VBZ cord-264489-h1n9ywbd 8 13 a a DT cord-264489-h1n9ywbd 8 14 close close JJ cord-264489-h1n9ywbd 8 15 look look NN cord-264489-h1n9ywbd 8 16 at at IN cord-264489-h1n9ywbd 8 17 the the DT cord-264489-h1n9ywbd 8 18 structural structural JJ cord-264489-h1n9ywbd 8 19 stabilities stability NNS cord-264489-h1n9ywbd 8 20 of of IN cord-264489-h1n9ywbd 8 21 IL-18 IL-18 NNP cord-264489-h1n9ywbd 8 22 and and CC cord-264489-h1n9ywbd 8 23 IL-18 IL-18 NNP cord-264489-h1n9ywbd 8 24 receptor receptor NN cord-264489-h1n9ywbd 8 25 - - HYPH cord-264489-h1n9ywbd 8 26 bound bind VBN cord-264489-h1n9ywbd 8 27 ligand ligand NN cord-264489-h1n9ywbd 8 28 structures structure NNS cord-264489-h1n9ywbd 8 29 as as IN cord-264489-h1n9ywbd 8 30 functions function NNS cord-264489-h1n9ywbd 8 31 of of IN cord-264489-h1n9ywbd 8 32 time time NN cord-264489-h1n9ywbd 8 33 . . . cord-264489-h1n9ywbd 9 1 The the DT cord-264489-h1n9ywbd 9 2 results result NNS cord-264489-h1n9ywbd 9 3 help help VBP cord-264489-h1n9ywbd 9 4 to to TO cord-264489-h1n9ywbd 9 5 identify identify VB cord-264489-h1n9ywbd 9 6 the the DT cord-264489-h1n9ywbd 9 7 conformational conformational JJ cord-264489-h1n9ywbd 9 8 changes change NNS cord-264489-h1n9ywbd 9 9 of of IN cord-264489-h1n9ywbd 9 10 the the DT cord-264489-h1n9ywbd 9 11 ligand ligand NN cord-264489-h1n9ywbd 9 12 due due IN cord-264489-h1n9ywbd 9 13 to to IN cord-264489-h1n9ywbd 9 14 receptor receptor NN cord-264489-h1n9ywbd 9 15 binding binding NN cord-264489-h1n9ywbd 9 16 , , , cord-264489-h1n9ywbd 9 17 as as RB cord-264489-h1n9ywbd 9 18 well well RB cord-264489-h1n9ywbd 9 19 as as IN cord-264489-h1n9ywbd 9 20 the the DT cord-264489-h1n9ywbd 9 21 structural structural JJ cord-264489-h1n9ywbd 9 22 orders order NNS cord-264489-h1n9ywbd 9 23 of of IN cord-264489-h1n9ywbd 9 24 the the DT cord-264489-h1n9ywbd 9 25 apo apo NNP cord-264489-h1n9ywbd 9 26 and and CC cord-264489-h1n9ywbd 9 27 holo holo NNP cord-264489-h1n9ywbd 9 28 IL-18 IL-18 NNP cord-264489-h1n9ywbd 9 29 protein protein NN cord-264489-h1n9ywbd 9 30 complexes complex NNS cord-264489-h1n9ywbd 9 31 . . . cord-264489-h1n9ywbd 10 1 Immunologically immunologically RB cord-264489-h1n9ywbd 10 2 relevant relevant JJ cord-264489-h1n9ywbd 10 3 proteins protein NNS cord-264489-h1n9ywbd 10 4 are be VBP cord-264489-h1n9ywbd 10 5 critical critical JJ cord-264489-h1n9ywbd 10 6 for for IN cord-264489-h1n9ywbd 10 7 the the DT cord-264489-h1n9ywbd 10 8 functioning functioning NN cord-264489-h1n9ywbd 10 9 of of IN cord-264489-h1n9ywbd 10 10 cellular cellular JJ cord-264489-h1n9ywbd 10 11 pathways pathway NNS cord-264489-h1n9ywbd 10 12 . . . cord-264489-h1n9ywbd 11 1 Therefore therefore RB cord-264489-h1n9ywbd 11 2 , , , cord-264489-h1n9ywbd 11 3 in in IN cord-264489-h1n9ywbd 11 4 the the DT cord-264489-h1n9ywbd 11 5 general general JJ cord-264489-h1n9ywbd 11 6 contexts context NNS cord-264489-h1n9ywbd 11 7 of of IN cord-264489-h1n9ywbd 11 8 target target NN cord-264489-h1n9ywbd 11 9 - - HYPH cord-264489-h1n9ywbd 11 10 based base VBN cord-264489-h1n9ywbd 11 11 therapies therapy NNS cord-264489-h1n9ywbd 11 12 and and CC cord-264489-h1n9ywbd 11 13 drug drug NN cord-264489-h1n9ywbd 11 14 designs design NNS cord-264489-h1n9ywbd 11 15 , , , cord-264489-h1n9ywbd 11 16 it -PRON- PRP cord-264489-h1n9ywbd 11 17 is be VBZ cord-264489-h1n9ywbd 11 18 necessary necessary JJ cord-264489-h1n9ywbd 11 19 to to TO cord-264489-h1n9ywbd 11 20 fully fully RB cord-264489-h1n9ywbd 11 21 understand understand VB cord-264489-h1n9ywbd 11 22 how how WRB cord-264489-h1n9ywbd 11 23 these these DT cord-264489-h1n9ywbd 11 24 proteins protein NNS cord-264489-h1n9ywbd 11 25 and and CC cord-264489-h1n9ywbd 11 26 their -PRON- PRP$ cord-264489-h1n9ywbd 11 27 variants variant NNS cord-264489-h1n9ywbd 11 28 participate participate VBP cord-264489-h1n9ywbd 11 29 in in IN cord-264489-h1n9ywbd 11 30 the the DT cord-264489-h1n9ywbd 11 31 progressions progression NNS cord-264489-h1n9ywbd 11 32 of of IN cord-264489-h1n9ywbd 11 33 inflammatory inflammatory JJ cord-264489-h1n9ywbd 11 34 , , , cord-264489-h1n9ywbd 11 35 autoimmune autoimmune JJ cord-264489-h1n9ywbd 11 36 and and CC cord-264489-h1n9ywbd 11 37 infectious infectious JJ cord-264489-h1n9ywbd 11 38 human human JJ cord-264489-h1n9ywbd 11 39 diseases disease NNS cord-264489-h1n9ywbd 11 40 ( ( -LRB- cord-264489-h1n9ywbd 11 41 Kabat Kabat NNP cord-264489-h1n9ywbd 11 42 1968 1968 CD cord-264489-h1n9ywbd 11 43 ; ; : cord-264489-h1n9ywbd 12 1 Voit Voit NNP cord-264489-h1n9ywbd 12 2 2014 2014 CD cord-264489-h1n9ywbd 12 3 ; ; : cord-264489-h1n9ywbd 12 4 Taylor Taylor NNP cord-264489-h1n9ywbd 12 5 et et NNP cord-264489-h1n9ywbd 12 6 al al NNP cord-264489-h1n9ywbd 12 7 . . . cord-264489-h1n9ywbd 12 8 2017 2017 CD cord-264489-h1n9ywbd 13 1 ; ; : cord-264489-h1n9ywbd 13 2 Gupta Gupta NNP cord-264489-h1n9ywbd 13 3 et et NNP cord-264489-h1n9ywbd 13 4 al al NNP cord-264489-h1n9ywbd 13 5 . . . cord-264489-h1n9ywbd 14 1 2019 2019 CD cord-264489-h1n9ywbd 14 2 ; ; : cord-264489-h1n9ywbd 14 3 Huang Huang NNP cord-264489-h1n9ywbd 14 4 et et NNP cord-264489-h1n9ywbd 14 5 al al NNP cord-264489-h1n9ywbd 14 6 . . . cord-264489-h1n9ywbd 15 1 2019 2019 CD cord-264489-h1n9ywbd 15 2 ; ; : cord-264489-h1n9ywbd 15 3 Jang Jang NNP cord-264489-h1n9ywbd 15 4 et et FW cord-264489-h1n9ywbd 15 5 al al NNP cord-264489-h1n9ywbd 15 6 . . . cord-264489-h1n9ywbd 15 7 2019 2019 CD cord-264489-h1n9ywbd 15 8 ) ) -RRB- cord-264489-h1n9ywbd 15 9 . . . cord-264489-h1n9ywbd 16 1 The the DT cord-264489-h1n9ywbd 16 2 task task NN cord-264489-h1n9ywbd 16 3 of of IN cord-264489-h1n9ywbd 16 4 gathering gather VBG cord-264489-h1n9ywbd 16 5 detailed detailed JJ cord-264489-h1n9ywbd 16 6 knowledge knowledge NN cord-264489-h1n9ywbd 16 7 about about IN cord-264489-h1n9ywbd 16 8 this this DT cord-264489-h1n9ywbd 16 9 topic topic NN cord-264489-h1n9ywbd 16 10 can can MD cord-264489-h1n9ywbd 16 11 be be VB cord-264489-h1n9ywbd 16 12 aided aid VBN cord-264489-h1n9ywbd 16 13 to to IN cord-264489-h1n9ywbd 16 14 a a DT cord-264489-h1n9ywbd 16 15 large large JJ cord-264489-h1n9ywbd 16 16 extent extent NN cord-264489-h1n9ywbd 16 17 with with IN cord-264489-h1n9ywbd 16 18 residue residue NN cord-264489-h1n9ywbd 16 19 - - HYPH cord-264489-h1n9ywbd 16 20 level level NN cord-264489-h1n9ywbd 16 21 structural structural JJ cord-264489-h1n9ywbd 16 22 analyses analysis NNS cord-264489-h1n9ywbd 16 23 of of IN cord-264489-h1n9ywbd 16 24 immunologically immunologically RB cord-264489-h1n9ywbd 16 25 significant significant JJ cord-264489-h1n9ywbd 16 26 proteins protein NNS cord-264489-h1n9ywbd 16 27 and and CC cord-264489-h1n9ywbd 16 28 their -PRON- PRP$ cord-264489-h1n9ywbd 16 29 interaction interaction NN cord-264489-h1n9ywbd 16 30 with with IN cord-264489-h1n9ywbd 16 31 receptors receptor NNS cord-264489-h1n9ywbd 16 32 ( ( -LRB- cord-264489-h1n9ywbd 16 33 Moczydlowski Moczydlowski NNP cord-264489-h1n9ywbd 16 34 2013 2013 CD cord-264489-h1n9ywbd 16 35 ; ; : cord-264489-h1n9ywbd 16 36 Xiao Xiao NNP cord-264489-h1n9ywbd 16 37 et et NNP cord-264489-h1n9ywbd 16 38 al al NNP cord-264489-h1n9ywbd 16 39 . . . cord-264489-h1n9ywbd 16 40 2018 2018 CD cord-264489-h1n9ywbd 16 41 ; ; : cord-264489-h1n9ywbd 16 42 Yao Yao NNP cord-264489-h1n9ywbd 16 43 et et NNP cord-264489-h1n9ywbd 16 44 al al NNP cord-264489-h1n9ywbd 16 45 . . . cord-264489-h1n9ywbd 16 46 2019 2019 CD cord-264489-h1n9ywbd 16 47 ) ) -RRB- cord-264489-h1n9ywbd 16 48 . . . cord-264489-h1n9ywbd 17 1 This this DT cord-264489-h1n9ywbd 17 2 investigative investigative JJ cord-264489-h1n9ywbd 17 3 approach approach NN cord-264489-h1n9ywbd 17 4 assists assist VBZ cord-264489-h1n9ywbd 17 5 in in IN cord-264489-h1n9ywbd 17 6 the the DT cord-264489-h1n9ywbd 17 7 proper proper JJ cord-264489-h1n9ywbd 17 8 identifications identification NNS cord-264489-h1n9ywbd 17 9 of of IN cord-264489-h1n9ywbd 17 10 therapeutic therapeutic JJ cord-264489-h1n9ywbd 17 11 - - HYPH cord-264489-h1n9ywbd 17 12 targets target NNS cord-264489-h1n9ywbd 17 13 , , , cord-264489-h1n9ywbd 17 14 their -PRON- PRP$ cord-264489-h1n9ywbd 17 15 structural structural JJ cord-264489-h1n9ywbd 17 16 - - HYPH cord-264489-h1n9ywbd 17 17 assemblies assembly NNS cord-264489-h1n9ywbd 17 18 and and CC cord-264489-h1n9ywbd 17 19 consistent consistent JJ cord-264489-h1n9ywbd 17 20 ligand ligand NN cord-264489-h1n9ywbd 17 21 - - HYPH cord-264489-h1n9ywbd 17 22 receptor receptor NN cord-264489-h1n9ywbd 17 23 interfacial interfacial JJ cord-264489-h1n9ywbd 17 24 interactions interaction NNS cord-264489-h1n9ywbd 17 25 , , , cord-264489-h1n9ywbd 17 26 and and CC cord-264489-h1n9ywbd 17 27 thus thus RB cord-264489-h1n9ywbd 17 28 , , , cord-264489-h1n9ywbd 17 29 plays play VBZ cord-264489-h1n9ywbd 17 30 a a DT cord-264489-h1n9ywbd 17 31 vital vital JJ cord-264489-h1n9ywbd 17 32 role role NN cord-264489-h1n9ywbd 17 33 in in IN cord-264489-h1n9ywbd 17 34 the the DT cord-264489-h1n9ywbd 17 35 development development NN cord-264489-h1n9ywbd 17 36 of of IN cord-264489-h1n9ywbd 17 37 new new JJ cord-264489-h1n9ywbd 17 38 , , , cord-264489-h1n9ywbd 17 39 innovative innovative JJ cord-264489-h1n9ywbd 17 40 medicines medicine NNS cord-264489-h1n9ywbd 17 41 ( ( -LRB- cord-264489-h1n9ywbd 17 42 Freudenberg Freudenberg NNP cord-264489-h1n9ywbd 17 43 et et FW cord-264489-h1n9ywbd 17 44 al al NNP cord-264489-h1n9ywbd 17 45 . . . cord-264489-h1n9ywbd 17 46 2002 2002 CD cord-264489-h1n9ywbd 17 47 ; ; : cord-264489-h1n9ywbd 17 48 Asbury Asbury NNP cord-264489-h1n9ywbd 17 49 et et NNP cord-264489-h1n9ywbd 17 50 al al NNP cord-264489-h1n9ywbd 17 51 . . NNP cord-264489-h1n9ywbd 17 52 2010 2010 CD cord-264489-h1n9ywbd 17 53 ; ; : cord-264489-h1n9ywbd 17 54 Haydarlou Haydarlou NNP cord-264489-h1n9ywbd 17 55 et et NNP cord-264489-h1n9ywbd 17 56 al al NNP cord-264489-h1n9ywbd 17 57 . . . cord-264489-h1n9ywbd 17 58 2016 2016 CD cord-264489-h1n9ywbd 17 59 ; ; : cord-264489-h1n9ywbd 17 60 Mariethoz Mariethoz NNP cord-264489-h1n9ywbd 17 61 et et NNP cord-264489-h1n9ywbd 17 62 al al NNP cord-264489-h1n9ywbd 17 63 . . . cord-264489-h1n9ywbd 17 64 2016 2016 CD cord-264489-h1n9ywbd 17 65 ; ; : cord-264489-h1n9ywbd 17 66 Janwa Janwa NNP cord-264489-h1n9ywbd 17 67 et et NNP cord-264489-h1n9ywbd 17 68 al al NNP cord-264489-h1n9ywbd 17 69 . . . cord-264489-h1n9ywbd 17 70 2019 2019 CD cord-264489-h1n9ywbd 17 71 ) ) -RRB- cord-264489-h1n9ywbd 17 72 . . . cord-264489-h1n9ywbd 18 1 The the DT cord-264489-h1n9ywbd 18 2 present present JJ cord-264489-h1n9ywbd 18 3 study study NN cord-264489-h1n9ywbd 18 4 of of IN cord-264489-h1n9ywbd 18 5 molecular molecular JJ cord-264489-h1n9ywbd 18 6 dynamics dynamic NNS cord-264489-h1n9ywbd 18 7 ( ( -LRB- cord-264489-h1n9ywbd 18 8 MD MD NNP cord-264489-h1n9ywbd 18 9 ) ) -RRB- cord-264489-h1n9ywbd 18 10 simulation simulation NN cord-264489-h1n9ywbd 18 11 ( ( -LRB- cord-264489-h1n9ywbd 18 12 Ho Ho NNP cord-264489-h1n9ywbd 18 13 and and CC cord-264489-h1n9ywbd 18 14 Hamelberg Hamelberg NNP cord-264489-h1n9ywbd 18 15 2018 2018 CD cord-264489-h1n9ywbd 18 16 ; ; : cord-264489-h1n9ywbd 18 17 Jin Jin NNP cord-264489-h1n9ywbd 18 18 et et NNP cord-264489-h1n9ywbd 18 19 al al NNP cord-264489-h1n9ywbd 18 20 . . . cord-264489-h1n9ywbd 18 21 2020 2020 CD cord-264489-h1n9ywbd 18 22 ; ; : cord-264489-h1n9ywbd 18 23 Weako Weako NNP cord-264489-h1n9ywbd 18 24 et et FW cord-264489-h1n9ywbd 18 25 al al NNP cord-264489-h1n9ywbd 18 26 . . NNP cord-264489-h1n9ywbd 18 27 2020 2020 CD cord-264489-h1n9ywbd 18 28 ) ) -RRB- cord-264489-h1n9ywbd 18 29 , , , cord-264489-h1n9ywbd 18 30 focusing focus VBG cord-264489-h1n9ywbd 18 31 on on IN cord-264489-h1n9ywbd 18 32 Interleukin-18 interleukin-18 NN cord-264489-h1n9ywbd 18 33 ( ( -LRB- cord-264489-h1n9ywbd 18 34 IL-18 IL-18 NNP cord-264489-h1n9ywbd 18 35 ) ) -RRB- cord-264489-h1n9ywbd 18 36 , , , cord-264489-h1n9ywbd 18 37 falls fall VBZ cord-264489-h1n9ywbd 18 38 in in IN cord-264489-h1n9ywbd 18 39 this this DT cord-264489-h1n9ywbd 18 40 category category NN cord-264489-h1n9ywbd 18 41 of of IN cord-264489-h1n9ywbd 18 42 computational computational JJ cord-264489-h1n9ywbd 18 43 structural structural JJ cord-264489-h1n9ywbd 18 44 immunology immunology NN cord-264489-h1n9ywbd 18 45 . . . cord-264489-h1n9ywbd 19 1 The the DT cord-264489-h1n9ywbd 19 2 main main JJ cord-264489-h1n9ywbd 19 3 goal goal NN cord-264489-h1n9ywbd 19 4 of of IN cord-264489-h1n9ywbd 19 5 this this DT cord-264489-h1n9ywbd 19 6 study study NN cord-264489-h1n9ywbd 19 7 is be VBZ cord-264489-h1n9ywbd 19 8 to to TO cord-264489-h1n9ywbd 19 9 explore explore VB cord-264489-h1n9ywbd 19 10 the the DT cord-264489-h1n9ywbd 19 11 essential essential JJ cord-264489-h1n9ywbd 19 12 structural structural JJ cord-264489-h1n9ywbd 19 13 and and CC cord-264489-h1n9ywbd 19 14 conformational conformational JJ cord-264489-h1n9ywbd 19 15 aspects aspect NNS cord-264489-h1n9ywbd 19 16 of of IN cord-264489-h1n9ywbd 19 17 IL-18 IL-18 NNP cord-264489-h1n9ywbd 19 18 ligand ligand NN cord-264489-h1n9ywbd 19 19 and and CC cord-264489-h1n9ywbd 19 20 ligand ligand NN cord-264489-h1n9ywbd 19 21 bound bind VBN cord-264489-h1n9ywbd 19 22 receptor receptor NN cord-264489-h1n9ywbd 19 23 systems system NNS cord-264489-h1n9ywbd 19 24 . . . cord-264489-h1n9ywbd 20 1 IL-18 IL-18 NNP cord-264489-h1n9ywbd 20 2 , , , cord-264489-h1n9ywbd 20 3 also also RB cord-264489-h1n9ywbd 20 4 known know VBN cord-264489-h1n9ywbd 20 5 as as IN cord-264489-h1n9ywbd 20 6 interferon interferon NN cord-264489-h1n9ywbd 20 7 gamma gamma NN cord-264489-h1n9ywbd 20 8 ( ( -LRB- cord-264489-h1n9ywbd 20 9 IFN- IFN- NNP cord-264489-h1n9ywbd 20 10 ) ) -RRB- cord-264489-h1n9ywbd 20 11 inducing induce VBG cord-264489-h1n9ywbd 20 12 factor factor NN cord-264489-h1n9ywbd 20 13 , , , cord-264489-h1n9ywbd 20 14 is be VBZ cord-264489-h1n9ywbd 20 15 a a DT cord-264489-h1n9ywbd 20 16 pro pro JJ cord-264489-h1n9ywbd 20 17 - - JJ cord-264489-h1n9ywbd 20 18 inflammatory inflammatory JJ cord-264489-h1n9ywbd 20 19 cytokine cytokine NN cord-264489-h1n9ywbd 20 20 . . . cord-264489-h1n9ywbd 21 1 IL-18 IL-18 NNP cord-264489-h1n9ywbd 21 2 induces induce VBZ cord-264489-h1n9ywbd 21 3 T T NNP cord-264489-h1n9ywbd 21 4 helper helper NN cord-264489-h1n9ywbd 21 5 ( ( -LRB- cord-264489-h1n9ywbd 21 6 TH TH NNP cord-264489-h1n9ywbd 21 7 ) ) -RRB- cord-264489-h1n9ywbd 21 8 cells cell NNS cord-264489-h1n9ywbd 21 9 1 1 CD cord-264489-h1n9ywbd 21 10 and and CC cord-264489-h1n9ywbd 21 11 2 2 CD cord-264489-h1n9ywbd 21 12 responses response NNS cord-264489-h1n9ywbd 21 13 , , , cord-264489-h1n9ywbd 21 14 and and CC cord-264489-h1n9ywbd 21 15 IL-18 IL-18 NNP cord-264489-h1n9ywbd 21 16 signal signal NN cord-264489-h1n9ywbd 21 17 transduction transduction NN cord-264489-h1n9ywbd 22 1 J J NNP cord-264489-h1n9ywbd 22 2 o o NN cord-264489-h1n9ywbd 22 3 u u NN cord-264489-h1n9ywbd 22 4 r r NN cord-264489-h1n9ywbd 22 5 n n NN cord-264489-h1n9ywbd 22 6 a a DT cord-264489-h1n9ywbd 22 7 l l NN cord-264489-h1n9ywbd 22 8 P p NN cord-264489-h1n9ywbd 22 9 r r NN cord-264489-h1n9ywbd 22 10 e e NN cord-264489-h1n9ywbd 23 1 -p -p NNP cord-264489-h1n9ywbd 23 2 r r NN cord-264489-h1n9ywbd 23 3 o o NN cord-264489-h1n9ywbd 23 4 o o NN cord-264489-h1n9ywbd 23 5 f f NN cord-264489-h1n9ywbd 23 6 cascade cascade NN cord-264489-h1n9ywbd 23 7 can can MD cord-264489-h1n9ywbd 23 8 also also RB cord-264489-h1n9ywbd 23 9 activate activate VB cord-264489-h1n9ywbd 23 10 nuclear nuclear JJ cord-264489-h1n9ywbd 23 11 factor factor NN cord-264489-h1n9ywbd 23 12 kappa kappa NN cord-264489-h1n9ywbd 23 13 beta beta NN cord-264489-h1n9ywbd 23 14 ( ( -LRB- cord-264489-h1n9ywbd 23 15 NF nf NN cord-264489-h1n9ywbd 23 16 ) ) -RRB- cord-264489-h1n9ywbd 24 1 ( ( -LRB- cord-264489-h1n9ywbd 24 2 Mak Mak NNP cord-264489-h1n9ywbd 24 3 and and CC cord-264489-h1n9ywbd 24 4 Saunders Saunders NNP cord-264489-h1n9ywbd 24 5 2006 2006 CD cord-264489-h1n9ywbd 24 6 ) ) -RRB- cord-264489-h1n9ywbd 24 7 . . . cord-264489-h1n9ywbd 25 1 IL-18 IL-18 NNP cord-264489-h1n9ywbd 25 2 , , , cord-264489-h1n9ywbd 25 3 a a DT cord-264489-h1n9ywbd 25 4 member member NN cord-264489-h1n9ywbd 25 5 of of IN cord-264489-h1n9ywbd 25 6 interleukin-1 interleukin-1 NNP cord-264489-h1n9ywbd 25 7 ( ( -LRB- cord-264489-h1n9ywbd 25 8 IL-1 IL-1 NNP cord-264489-h1n9ywbd 25 9 ) ) -RRB- cord-264489-h1n9ywbd 25 10 family family NN cord-264489-h1n9ywbd 25 11 , , , cord-264489-h1n9ywbd 25 12 is be VBZ cord-264489-h1n9ywbd 25 13 similar similar JJ cord-264489-h1n9ywbd 25 14 to to IN cord-264489-h1n9ywbd 25 15 interleukin-12 interleukin-12 NNP cord-264489-h1n9ywbd 25 16 , , , cord-264489-h1n9ywbd 25 17 and and CC cord-264489-h1n9ywbd 25 18 is be VBZ cord-264489-h1n9ywbd 25 19 important important JJ cord-264489-h1n9ywbd 25 20 for for IN cord-264489-h1n9ywbd 25 21 supporting support VBG cord-264489-h1n9ywbd 25 22 the the DT cord-264489-h1n9ywbd 25 23 host host NN cord-264489-h1n9ywbd 25 24 defense defense NN cord-264489-h1n9ywbd 25 25 ( ( -LRB- cord-264489-h1n9ywbd 25 26 Dinarello Dinarello NNP cord-264489-h1n9ywbd 25 27 1999 1999 CD cord-264489-h1n9ywbd 25 28 ; ; : cord-264489-h1n9ywbd 26 1 Gracie Gracie NNP cord-264489-h1n9ywbd 26 2 et et NNP cord-264489-h1n9ywbd 26 3 al al NNP cord-264489-h1n9ywbd 26 4 . . NNP cord-264489-h1n9ywbd 26 5 2003 2003 CD cord-264489-h1n9ywbd 26 6 ) ) -RRB- cord-264489-h1n9ywbd 26 7 . . . cord-264489-h1n9ywbd 27 1 IL-18 IL-18 NNP cord-264489-h1n9ywbd 27 2 bridges bridge VBZ cord-264489-h1n9ywbd 27 3 the the DT cord-264489-h1n9ywbd 27 4 gap gap NN cord-264489-h1n9ywbd 27 5 between between IN cord-264489-h1n9ywbd 27 6 innate innate JJ cord-264489-h1n9ywbd 27 7 and and CC cord-264489-h1n9ywbd 27 8 adaptive adaptive JJ cord-264489-h1n9ywbd 27 9 immune immune JJ cord-264489-h1n9ywbd 27 10 responses response NNS cord-264489-h1n9ywbd 27 11 and and CC cord-264489-h1n9ywbd 27 12 is be VBZ cord-264489-h1n9ywbd 27 13 responsible responsible JJ cord-264489-h1n9ywbd 27 14 for for IN cord-264489-h1n9ywbd 27 15 various various JJ cord-264489-h1n9ywbd 27 16 inflammatory inflammatory JJ cord-264489-h1n9ywbd 27 17 , , , cord-264489-h1n9ywbd 27 18 autoimmune autoimmune JJ cord-264489-h1n9ywbd 27 19 and and CC cord-264489-h1n9ywbd 27 20 physiological physiological JJ cord-264489-h1n9ywbd 27 21 conditions condition NNS cord-264489-h1n9ywbd 27 22 , , , cord-264489-h1n9ywbd 27 23 such such JJ cord-264489-h1n9ywbd 27 24 as as IN cord-264489-h1n9ywbd 27 25 inflammatory inflammatory JJ cord-264489-h1n9ywbd 27 26 bowel bowel NN cord-264489-h1n9ywbd 27 27 disease disease NN cord-264489-h1n9ywbd 27 28 , , , cord-264489-h1n9ywbd 27 29 psoriasis psoriasis NN cord-264489-h1n9ywbd 27 30 , , , cord-264489-h1n9ywbd 27 31 sepsis sepsis NN cord-264489-h1n9ywbd 27 32 , , , cord-264489-h1n9ywbd 27 33 myocardial myocardial JJ cord-264489-h1n9ywbd 27 34 infarction infarction NN cord-264489-h1n9ywbd 27 35 , , , cord-264489-h1n9ywbd 27 36 Crohn Crohn NNP cord-264489-h1n9ywbd 27 37 's 's POS cord-264489-h1n9ywbd 27 38 disease disease NN cord-264489-h1n9ywbd 27 39 , , , cord-264489-h1n9ywbd 27 40 arthritis arthritis NN cord-264489-h1n9ywbd 27 41 and and CC cord-264489-h1n9ywbd 27 42 cancer cancer NN cord-264489-h1n9ywbd 27 43 . . . cord-264489-h1n9ywbd 28 1 The the DT cord-264489-h1n9ywbd 28 2 IL-18 IL-18 NNP cord-264489-h1n9ywbd 28 3 first first RB cord-264489-h1n9ywbd 28 4 binds bind VBZ cord-264489-h1n9ywbd 28 5 to to IN cord-264489-h1n9ywbd 28 6 the the DT cord-264489-h1n9ywbd 28 7 IL-18 IL-18 NNP cord-264489-h1n9ywbd 28 8 receptor receptor NN cord-264489-h1n9ywbd 28 9 ( ( -LRB- cord-264489-h1n9ywbd 28 10 IL-18R IL-18R NNP cord-264489-h1n9ywbd 28 11 and and CC cord-264489-h1n9ywbd 28 12 forms form VBZ cord-264489-h1n9ywbd 28 13 a a DT cord-264489-h1n9ywbd 28 14 lower low JJR cord-264489-h1n9ywbd 28 15 affinity affinity NN cord-264489-h1n9ywbd 28 16 complex complex NN cord-264489-h1n9ywbd 28 17 . . . cord-264489-h1n9ywbd 29 1 Upon upon IN cord-264489-h1n9ywbd 29 2 binding bind VBG cord-264489-h1n9ywbd 29 3 with with IN cord-264489-h1n9ywbd 29 4 IL-18 il-18 JJ cord-264489-h1n9ywbd 29 5 receptor receptor NN cord-264489-h1n9ywbd 29 6 ( ( -LRB- cord-264489-h1n9ywbd 29 7 IL-18Ra IL-18Ra VBN cord-264489-h1n9ywbd 29 8 hetero hetero JJ cord-264489-h1n9ywbd 29 9 - - JJ cord-264489-h1n9ywbd 29 10 trimeric trimeric JJ cord-264489-h1n9ywbd 29 11 complex complex NN cord-264489-h1n9ywbd 29 12 with with IN cord-264489-h1n9ywbd 29 13 higher high JJR cord-264489-h1n9ywbd 29 14 affinity affinity NN cord-264489-h1n9ywbd 29 15 is be VBZ cord-264489-h1n9ywbd 29 16 formed form VBN cord-264489-h1n9ywbd 29 17 , , , cord-264489-h1n9ywbd 29 18 which which WDT cord-264489-h1n9ywbd 29 19 initiates initiate VBZ cord-264489-h1n9ywbd 29 20 the the DT cord-264489-h1n9ywbd 29 21 signal signal NN cord-264489-h1n9ywbd 29 22 transduction transduction NN cord-264489-h1n9ywbd 29 23 process process NN cord-264489-h1n9ywbd 29 24 and and CC cord-264489-h1n9ywbd 29 25 , , , cord-264489-h1n9ywbd 29 26 triggers trigger VBZ cord-264489-h1n9ywbd 29 27 the the DT cord-264489-h1n9ywbd 29 28 NF NF NNP cord-264489-h1n9ywbd 29 29 - - HYPH cord-264489-h1n9ywbd 29 30 κβ κβ NNP cord-264489-h1n9ywbd 29 31 , , , cord-264489-h1n9ywbd 29 32 leading lead VBG cord-264489-h1n9ywbd 29 33 to to IN cord-264489-h1n9ywbd 29 34 a a DT cord-264489-h1n9ywbd 29 35 downstream downstream JJ cord-264489-h1n9ywbd 29 36 transcription transcription NN cord-264489-h1n9ywbd 29 37 through through IN cord-264489-h1n9ywbd 29 38 mitogen mitogen NN cord-264489-h1n9ywbd 29 39 - - HYPH cord-264489-h1n9ywbd 29 40 activated activate VBN cord-264489-h1n9ywbd 29 41 protein protein NN cord-264489-h1n9ywbd 29 42 kinase kinase NN cord-264489-h1n9ywbd 29 43 ( ( -LRB- cord-264489-h1n9ywbd 29 44 MAPK MAPK NNP cord-264489-h1n9ywbd 29 45 ) ) -RRB- cord-264489-h1n9ywbd 29 46 signaling signal VBG cord-264489-h1n9ywbd 29 47 cascades cascade NNS cord-264489-h1n9ywbd 30 1 ( ( -LRB- cord-264489-h1n9ywbd 30 2 Kato Kato NNP cord-264489-h1n9ywbd 30 3 et et NNP cord-264489-h1n9ywbd 30 4 al al NNP cord-264489-h1n9ywbd 30 5 . . . cord-264489-h1n9ywbd 31 1 2003 2003 CD cord-264489-h1n9ywbd 31 2 ; ; : cord-264489-h1n9ywbd 31 3 Ohnishi Ohnishi NNP cord-264489-h1n9ywbd 31 4 et et NNP cord-264489-h1n9ywbd 31 5 al al NNP cord-264489-h1n9ywbd 31 6 . . . cord-264489-h1n9ywbd 32 1 2012 2012 CD cord-264489-h1n9ywbd 32 2 ; ; : cord-264489-h1n9ywbd 32 3 Tsutsumi Tsutsumi NNP cord-264489-h1n9ywbd 32 4 et et NNP cord-264489-h1n9ywbd 32 5 al al NNP cord-264489-h1n9ywbd 32 6 . . NNP cord-264489-h1n9ywbd 32 7 2014 2014 CD cord-264489-h1n9ywbd 32 8 ) ) -RRB- cord-264489-h1n9ywbd 32 9 . . . cord-264489-h1n9ywbd 33 1 As as IN cord-264489-h1n9ywbd 33 2 reported report VBN cord-264489-h1n9ywbd 33 3 by by IN cord-264489-h1n9ywbd 33 4 previous previous JJ cord-264489-h1n9ywbd 33 5 authors author NNS cord-264489-h1n9ywbd 33 6 , , , cord-264489-h1n9ywbd 33 7 IL-1Rrp IL-1Rrp NNP cord-264489-h1n9ywbd 33 8 , , , cord-264489-h1n9ywbd 33 9 the the DT cord-264489-h1n9ywbd 33 10 main main JJ cord-264489-h1n9ywbd 33 11 IL-18R il-18r NN cord-264489-h1n9ywbd 33 12 , , , cord-264489-h1n9ywbd 33 13 binds bind VBZ cord-264489-h1n9ywbd 33 14 to to IN cord-264489-h1n9ywbd 33 15 IL-18 IL-18 NNP cord-264489-h1n9ywbd 33 16 , , , cord-264489-h1n9ywbd 33 17 but but CC cord-264489-h1n9ywbd 33 18 not not RB cord-264489-h1n9ywbd 33 19 to to IN cord-264489-h1n9ywbd 34 1 IL-1β IL-1β NNP cord-264489-h1n9ywbd 35 1 ( ( -LRB- cord-264489-h1n9ywbd 35 2 Nakamura Nakamura NNP cord-264489-h1n9ywbd 35 3 et et NNP cord-264489-h1n9ywbd 35 4 al al NNP cord-264489-h1n9ywbd 35 5 . . . cord-264489-h1n9ywbd 35 6 2000 2000 CD cord-264489-h1n9ywbd 35 7 ) ) -RRB- cord-264489-h1n9ywbd 35 8 . . . cord-264489-h1n9ywbd 36 1 Kato Kato NNP cord-264489-h1n9ywbd 36 2 et et NNP cord-264489-h1n9ywbd 36 3 al al NNP cord-264489-h1n9ywbd 36 4 . . NNP cord-264489-h1n9ywbd 36 5 have have VBP cord-264489-h1n9ywbd 36 6 described describe VBN cord-264489-h1n9ywbd 36 7 the the DT cord-264489-h1n9ywbd 36 8 first first JJ cord-264489-h1n9ywbd 36 9 solution solution NN cord-264489-h1n9ywbd 36 10 structure structure NN cord-264489-h1n9ywbd 36 11 of of IN cord-264489-h1n9ywbd 36 12 IL-18 IL-18 NNP cord-264489-h1n9ywbd 36 13 ligand ligand NN cord-264489-h1n9ywbd 36 14 ( ( -LRB- cord-264489-h1n9ywbd 36 15 Kato Kato NNP cord-264489-h1n9ywbd 36 16 et et NNP cord-264489-h1n9ywbd 36 17 al al NNP cord-264489-h1n9ywbd 36 18 . . NNP cord-264489-h1n9ywbd 36 19 2003 2003 CD cord-264489-h1n9ywbd 36 20 ) ) -RRB- cord-264489-h1n9ywbd 36 21 . . . cord-264489-h1n9ywbd 37 1 This this DT cord-264489-h1n9ywbd 37 2 apo apo NNP cord-264489-h1n9ywbd 37 3 version version NN cord-264489-h1n9ywbd 37 4 of of IN cord-264489-h1n9ywbd 37 5 IL-18 IL-18 NNP cord-264489-h1n9ywbd 37 6 is be VBZ cord-264489-h1n9ywbd 37 7 further further RB cord-264489-h1n9ywbd 37 8 modified modify VBN cord-264489-h1n9ywbd 37 9 by by IN cord-264489-h1n9ywbd 37 10 Tsutsumi Tsutsumi NNP cord-264489-h1n9ywbd 37 11 et et NNP cord-264489-h1n9ywbd 37 12 al al NNP cord-264489-h1n9ywbd 37 13 . . . cord-264489-h1n9ywbd 38 1 ( ( -LRB- cord-264489-h1n9ywbd 38 2 Tsutsumi Tsutsumi NNP cord-264489-h1n9ywbd 38 3 et et NNP cord-264489-h1n9ywbd 38 4 al al NNP cord-264489-h1n9ywbd 38 5 . . NNP cord-264489-h1n9ywbd 38 6 2014 2014 CD cord-264489-h1n9ywbd 38 7 ) ) -RRB- cord-264489-h1n9ywbd 38 8 . . . cord-264489-h1n9ywbd 39 1 The the DT cord-264489-h1n9ywbd 39 2 ligand ligand NN cord-264489-h1n9ywbd 39 3 bound bind VBN cord-264489-h1n9ywbd 39 4 holo holo JJ cord-264489-h1n9ywbd 39 5 forms form NNS cord-264489-h1n9ywbd 39 6 of of IN cord-264489-h1n9ywbd 39 7 IL-18 IL-18 NNP cord-264489-h1n9ywbd 39 8 / / SYM cord-264489-h1n9ywbd 39 9 IL-18R IL-18R NNP cord-264489-h1n9ywbd 39 10 are be VBP cord-264489-h1n9ywbd 39 11 also also RB cord-264489-h1n9ywbd 39 12 elucidated elucidate VBN cord-264489-h1n9ywbd 39 13 by by IN cord-264489-h1n9ywbd 39 14 binding bind VBG cord-264489-h1n9ywbd 39 15 protein protein NN cord-264489-h1n9ywbd 39 16 ( ( -LRB- cord-264489-h1n9ywbd 39 17 IL-18BP IL-18BP NNP cord-264489-h1n9ywbd 39 18 ) ) -RRB- cord-264489-h1n9ywbd 39 19 is be VBZ cord-264489-h1n9ywbd 39 20 a a DT cord-264489-h1n9ywbd 39 21 cell cell NN cord-264489-h1n9ywbd 39 22 surface surface NN cord-264489-h1n9ywbd 39 23 receptor receptor NN cord-264489-h1n9ywbd 39 24 that that WDT cord-264489-h1n9ywbd 39 25 binds bind VBZ cord-264489-h1n9ywbd 39 26 to to IN cord-264489-h1n9ywbd 39 27 and and CC cord-264489-h1n9ywbd 39 28 eventually eventually RB cord-264489-h1n9ywbd 39 29 leads lead VBZ cord-264489-h1n9ywbd 39 30 to to IN cord-264489-h1n9ywbd 39 31 IL-18 IL-18 NNP cord-264489-h1n9ywbd 39 32 neutralization neutralization NN cord-264489-h1n9ywbd 39 33 ( ( -LRB- cord-264489-h1n9ywbd 39 34 Dinarello Dinarello NNP cord-264489-h1n9ywbd 39 35 et et FW cord-264489-h1n9ywbd 39 36 al al NNP cord-264489-h1n9ywbd 39 37 . . NNP cord-264489-h1n9ywbd 39 38 2013 2013 CD cord-264489-h1n9ywbd 39 39 ) ) -RRB- cord-264489-h1n9ywbd 39 40 . . . cord-264489-h1n9ywbd 40 1 A a DT cord-264489-h1n9ywbd 40 2 recent recent JJ cord-264489-h1n9ywbd 40 3 study study NN cord-264489-h1n9ywbd 40 4 by by IN cord-264489-h1n9ywbd 40 5 Krumm Krumm NNP cord-264489-h1n9ywbd 40 6 et et NNP cord-264489-h1n9ywbd 40 7 al al NNP cord-264489-h1n9ywbd 40 8 . . NNP cord-264489-h1n9ywbd 40 9 has have VBZ cord-264489-h1n9ywbd 40 10 identified identify VBN cord-264489-h1n9ywbd 40 11 the the DT cord-264489-h1n9ywbd 40 12 conserved conserve VBN cord-264489-h1n9ywbd 40 13 IL-18BP IL-18BP NNP cord-264489-h1n9ywbd 40 14 interfacial interfacial JJ cord-264489-h1n9ywbd 40 15 binding binding NN cord-264489-h1n9ywbd 40 16 - - HYPH cord-264489-h1n9ywbd 40 17 region region NN cord-264489-h1n9ywbd 40 18 on on IN cord-264489-h1n9ywbd 40 19 human human JJ cord-264489-h1n9ywbd 40 20 IL-18 IL-18 NNP cord-264489-h1n9ywbd 40 21 ( ( -LRB- cord-264489-h1n9ywbd 40 22 Krumm Krumm NNP cord-264489-h1n9ywbd 40 23 et et FW cord-264489-h1n9ywbd 40 24 al al NNP cord-264489-h1n9ywbd 40 25 . . NNP cord-264489-h1n9ywbd 40 26 2008 2008 CD cord-264489-h1n9ywbd 40 27 ) ) -RRB- cord-264489-h1n9ywbd 40 28 . . . cord-264489-h1n9ywbd 41 1 In in IN cord-264489-h1n9ywbd 41 2 recent recent JJ cord-264489-h1n9ywbd 41 3 years year NNS cord-264489-h1n9ywbd 41 4 , , , cord-264489-h1n9ywbd 41 5 inhibitor inhibitor NN cord-264489-h1n9ywbd 41 6 based base VBN cord-264489-h1n9ywbd 41 7 therapies therapy NNS cord-264489-h1n9ywbd 41 8 have have VBP cord-264489-h1n9ywbd 41 9 shown show VBN cord-264489-h1n9ywbd 41 10 great great JJ cord-264489-h1n9ywbd 41 11 potentials potential NNS cord-264489-h1n9ywbd 41 12 for for IN cord-264489-h1n9ywbd 41 13 further further JJ cord-264489-h1n9ywbd 41 14 developments development NNS cord-264489-h1n9ywbd 41 15 in in IN cord-264489-h1n9ywbd 41 16 the the DT cord-264489-h1n9ywbd 41 17 pharma pharma NNS cord-264489-h1n9ywbd 41 18 and and CC cord-264489-h1n9ywbd 41 19 biotech biotech JJ cord-264489-h1n9ywbd 41 20 sectors sector NNS cord-264489-h1n9ywbd 41 21 ( ( -LRB- cord-264489-h1n9ywbd 41 22 Vogt Vogt NNP cord-264489-h1n9ywbd 41 23 and and CC cord-264489-h1n9ywbd 41 24 Hofmann Hofmann NNP cord-264489-h1n9ywbd 41 25 2012 2012 CD cord-264489-h1n9ywbd 41 26 ; ; : cord-264489-h1n9ywbd 41 27 Boulaki Boulaki NNP cord-264489-h1n9ywbd 41 28 et et NNP cord-264489-h1n9ywbd 41 29 al al NNP cord-264489-h1n9ywbd 41 30 . . NNP cord-264489-h1n9ywbd 41 31 2013 2013 CD cord-264489-h1n9ywbd 41 32 ; ; : cord-264489-h1n9ywbd 41 33 Zamiri Zamiri NNP cord-264489-h1n9ywbd 41 34 et et NNP cord-264489-h1n9ywbd 41 35 al al NNP cord-264489-h1n9ywbd 41 36 . . . cord-264489-h1n9ywbd 42 1 2014 2014 CD cord-264489-h1n9ywbd 42 2 ; ; : cord-264489-h1n9ywbd 42 3 Gonzalez Gonzalez NNP cord-264489-h1n9ywbd 42 4 et et NNP cord-264489-h1n9ywbd 42 5 al al NNP cord-264489-h1n9ywbd 42 6 . . . cord-264489-h1n9ywbd 42 7 2015 2015 CD cord-264489-h1n9ywbd 42 8 ; ; : cord-264489-h1n9ywbd 42 9 Lin Lin NNP cord-264489-h1n9ywbd 42 10 et et NNP cord-264489-h1n9ywbd 42 11 al al NNP cord-264489-h1n9ywbd 42 12 . . . cord-264489-h1n9ywbd 42 13 2017 2017 CD cord-264489-h1n9ywbd 43 1 ; ; : cord-264489-h1n9ywbd 43 2 Kwak Kwak NNP cord-264489-h1n9ywbd 43 3 et et NNP cord-264489-h1n9ywbd 43 4 al al NNP cord-264489-h1n9ywbd 43 5 . . . cord-264489-h1n9ywbd 43 6 2018 2018 CD cord-264489-h1n9ywbd 43 7 ) ) -RRB- cord-264489-h1n9ywbd 43 8 . . . cord-264489-h1n9ywbd 44 1 The the DT cord-264489-h1n9ywbd 44 2 treatments treatment NNS cord-264489-h1n9ywbd 44 3 of of IN cord-264489-h1n9ywbd 44 4 IL-18 IL-18 NNP cord-264489-h1n9ywbd 44 5 related relate VBN cord-264489-h1n9ywbd 44 6 diseases disease NNS cord-264489-h1n9ywbd 44 7 may may MD cord-264489-h1n9ywbd 44 8 involve involve VB cord-264489-h1n9ywbd 44 9 the the DT cord-264489-h1n9ywbd 44 10 use use NN cord-264489-h1n9ywbd 44 11 of of IN cord-264489-h1n9ywbd 44 12 selective selective JJ cord-264489-h1n9ywbd 44 13 or or CC cord-264489-h1n9ywbd 44 14 potent potent JJ cord-264489-h1n9ywbd 44 15 IL-18 IL-18 NNP cord-264489-h1n9ywbd 44 16 ligand/-receptor ligand/-receptor IN cord-264489-h1n9ywbd 44 17 inhibitors inhibitor NNS cord-264489-h1n9ywbd 44 18 that that WDT cord-264489-h1n9ywbd 44 19 would would MD cord-264489-h1n9ywbd 44 20 interfere interfere VB cord-264489-h1n9ywbd 44 21 with with IN cord-264489-h1n9ywbd 44 22 , , , cord-264489-h1n9ywbd 44 23 or or CC cord-264489-h1n9ywbd 44 24 effectively effectively RB cord-264489-h1n9ywbd 44 25 block block VB cord-264489-h1n9ywbd 44 26 the the DT cord-264489-h1n9ywbd 44 27 targeted target VBN cord-264489-h1n9ywbd 44 28 functions function NNS cord-264489-h1n9ywbd 44 29 ( ( -LRB- cord-264489-h1n9ywbd 44 30 Hamasaki Hamasaki NNP cord-264489-h1n9ywbd 44 31 et et NNP cord-264489-h1n9ywbd 44 32 al al NNP cord-264489-h1n9ywbd 44 33 . . NNP cord-264489-h1n9ywbd 44 34 2005 2005 CD cord-264489-h1n9ywbd 44 35 ; ; : cord-264489-h1n9ywbd 44 36 _SP cord-264489-h1n9ywbd 44 37 J J NNP cord-264489-h1n9ywbd 44 38 o o NN cord-264489-h1n9ywbd 44 39 u u NN cord-264489-h1n9ywbd 44 40 r r NN cord-264489-h1n9ywbd 44 41 n n NN cord-264489-h1n9ywbd 44 42 a a DT cord-264489-h1n9ywbd 44 43 l l NN cord-264489-h1n9ywbd 44 44 P p NN cord-264489-h1n9ywbd 44 45 r r NN cord-264489-h1n9ywbd 44 46 e e NN cord-264489-h1n9ywbd 44 47 -p -p NN cord-264489-h1n9ywbd 44 48 r r NN cord-264489-h1n9ywbd 44 49 o o NN cord-264489-h1n9ywbd 44 50 o o NN cord-264489-h1n9ywbd 44 51 f f NN cord-264489-h1n9ywbd 44 52 Tsutsumi Tsutsumi NNP cord-264489-h1n9ywbd 44 53 et et NNP cord-264489-h1n9ywbd 44 54 al al NNP cord-264489-h1n9ywbd 44 55 . . . cord-264489-h1n9ywbd 44 56 2019 2019 CD cord-264489-h1n9ywbd 44 57 ) ) -RRB- cord-264489-h1n9ywbd 44 58 . . . cord-264489-h1n9ywbd 45 1 In in IN cord-264489-h1n9ywbd 45 2 our -PRON- PRP$ cord-264489-h1n9ywbd 45 3 earlier early JJR cord-264489-h1n9ywbd 45 4 papers paper NNS cord-264489-h1n9ywbd 45 5 we -PRON- PRP cord-264489-h1n9ywbd 45 6 have have VBP cord-264489-h1n9ywbd 45 7 described describe VBN cord-264489-h1n9ywbd 45 8 the the DT cord-264489-h1n9ywbd 45 9 structures structure NNS cord-264489-h1n9ywbd 45 10 and and CC cord-264489-h1n9ywbd 45 11 structure structure NN cord-264489-h1n9ywbd 45 12 - - HYPH cord-264489-h1n9ywbd 45 13 related relate VBN cord-264489-h1n9ywbd 45 14 functional functional JJ cord-264489-h1n9ywbd 45 15 changes change NNS cord-264489-h1n9ywbd 45 16 of of IN cord-264489-h1n9ywbd 45 17 several several JJ cord-264489-h1n9ywbd 45 18 physiologically physiologically RB cord-264489-h1n9ywbd 45 19 relevant relevant JJ cord-264489-h1n9ywbd 45 20 proteins protein NNS cord-264489-h1n9ywbd 45 21 ( ( -LRB- cord-264489-h1n9ywbd 45 22 Roy Roy NNP cord-264489-h1n9ywbd 45 23 and and CC cord-264489-h1n9ywbd 45 24 Luck Luck NNP cord-264489-h1n9ywbd 45 25 2007 2007 CD cord-264489-h1n9ywbd 45 26 ; ; : cord-264489-h1n9ywbd 45 27 Roy Roy NNP cord-264489-h1n9ywbd 45 28 2016a 2016a CD cord-264489-h1n9ywbd 45 29 Roy Roy NNP cord-264489-h1n9ywbd 45 30 , , , cord-264489-h1n9ywbd 45 31 2016b 2016b CD cord-264489-h1n9ywbd 45 32 Roy Roy NNP cord-264489-h1n9ywbd 45 33 , , , cord-264489-h1n9ywbd 45 34 2017 2017 CD cord-264489-h1n9ywbd 45 35 Roy Roy NNP cord-264489-h1n9ywbd 45 36 , , , cord-264489-h1n9ywbd 45 37 2019a 2019a CD cord-264489-h1n9ywbd 45 38 Roy Roy NNP cord-264489-h1n9ywbd 45 39 , , , cord-264489-h1n9ywbd 45 40 2019b 2019b CD cord-264489-h1n9ywbd 45 41 Roy Roy NNP cord-264489-h1n9ywbd 45 42 , , , cord-264489-h1n9ywbd 45 43 2020 2020 CD cord-264489-h1n9ywbd 45 44 . . . cord-264489-h1n9ywbd 46 1 The the DT cord-264489-h1n9ywbd 46 2 present present JJ cord-264489-h1n9ywbd 46 3 simulation simulation NN cord-264489-h1n9ywbd 46 4 study study NN cord-264489-h1n9ywbd 46 5 examines examine VBZ cord-264489-h1n9ywbd 46 6 the the DT cord-264489-h1n9ywbd 46 7 structural structural JJ cord-264489-h1n9ywbd 46 8 stabilities stability NNS cord-264489-h1n9ywbd 46 9 of of IN cord-264489-h1n9ywbd 46 10 the the DT cord-264489-h1n9ywbd 46 11 ligand ligand NN cord-264489-h1n9ywbd 46 12 - - HYPH cord-264489-h1n9ywbd 46 13 protein protein NN cord-264489-h1n9ywbd 46 14 , , , cord-264489-h1n9ywbd 46 15 IL-18 IL-18 NNP cord-264489-h1n9ywbd 46 16 and and CC cord-264489-h1n9ywbd 46 17 IL-18 IL-18 NNP cord-264489-h1n9ywbd 46 18 receptor receptor NN cord-264489-h1n9ywbd 46 19 ( ( -LRB- cord-264489-h1n9ywbd 46 20 IL-18R IL-18R NNP cord-264489-h1n9ywbd 46 21 ) ) -RRB- cord-264489-h1n9ywbd 46 22 bound bind VBN cord-264489-h1n9ywbd 46 23 ligand ligand NN cord-264489-h1n9ywbd 46 24 structures structure NNS cord-264489-h1n9ywbd 46 25 as as IN cord-264489-h1n9ywbd 46 26 functions function NNS cord-264489-h1n9ywbd 46 27 of of IN cord-264489-h1n9ywbd 46 28 time time NN cord-264489-h1n9ywbd 46 29 . . . cord-264489-h1n9ywbd 47 1 We -PRON- PRP cord-264489-h1n9ywbd 47 2 analyze analyze VBP cord-264489-h1n9ywbd 47 3 here here RB cord-264489-h1n9ywbd 47 4 the the DT cord-264489-h1n9ywbd 47 5 conformational conformational JJ cord-264489-h1n9ywbd 47 6 changes change NNS cord-264489-h1n9ywbd 47 7 within within IN cord-264489-h1n9ywbd 47 8 the the DT cord-264489-h1n9ywbd 47 9 ligand ligand NN cord-264489-h1n9ywbd 47 10 - - HYPH cord-264489-h1n9ywbd 47 11 protein protein NN cord-264489-h1n9ywbd 47 12 , , , cord-264489-h1n9ywbd 47 13 due due IN cord-264489-h1n9ywbd 47 14 to to IN cord-264489-h1n9ywbd 47 15 receptor receptor NN cord-264489-h1n9ywbd 47 16 binding binding NN cord-264489-h1n9ywbd 47 17 and and CC cord-264489-h1n9ywbd 47 18 , , , cord-264489-h1n9ywbd 47 19 we -PRON- PRP cord-264489-h1n9ywbd 47 20 also also RB cord-264489-h1n9ywbd 47 21 identify identify VBP cord-264489-h1n9ywbd 47 22 the the DT cord-264489-h1n9ywbd 47 23 possible possible JJ cord-264489-h1n9ywbd 47 24 structurally structurally RB cord-264489-h1n9ywbd 47 25 ordered order VBN cord-264489-h1n9ywbd 47 26 and and CC cord-264489-h1n9ywbd 47 27 disordered disordered JJ cord-264489-h1n9ywbd 47 28 region region NN cord-264489-h1n9ywbd 47 29 within within IN cord-264489-h1n9ywbd 47 30 the the DT cord-264489-h1n9ywbd 47 31 apo apo NNP cord-264489-h1n9ywbd 47 32 and and CC cord-264489-h1n9ywbd 47 33 holo holo NNP cord-264489-h1n9ywbd 47 34 ( ( -LRB- cord-264489-h1n9ywbd 47 35 ligand ligand NN cord-264489-h1n9ywbd 47 36 - - HYPH cord-264489-h1n9ywbd 47 37 bound bind VBN cord-264489-h1n9ywbd 47 38 ) ) -RRB- cord-264489-h1n9ywbd 47 39 protein protein NN cord-264489-h1n9ywbd 47 40 complexes complex NNS cord-264489-h1n9ywbd 47 41 . . . cord-264489-h1n9ywbd 48 1 All all DT cord-264489-h1n9ywbd 48 2 protein protein NN cord-264489-h1n9ywbd 48 3 structures structure NNS cord-264489-h1n9ywbd 48 4 were be VBD cord-264489-h1n9ywbd 48 5 collected collect VBN cord-264489-h1n9ywbd 48 6 from from IN cord-264489-h1n9ywbd 48 7 the the DT cord-264489-h1n9ywbd 48 8 Protein Protein NNP cord-264489-h1n9ywbd 48 9 Databank Databank NNP cord-264489-h1n9ywbd 48 10 ( ( -LRB- cord-264489-h1n9ywbd 48 11 PDB PDB NNP cord-264489-h1n9ywbd 48 12 ) ) -RRB- cord-264489-h1n9ywbd 48 13 website website NN cord-264489-h1n9ywbd 48 14 ( ( -LRB- cord-264489-h1n9ywbd 48 15 Berman Berman NNP cord-264489-h1n9ywbd 48 16 et et NNP cord-264489-h1n9ywbd 48 17 al al NNP cord-264489-h1n9ywbd 48 18 . . . cord-264489-h1n9ywbd 48 19 2000 2000 CD cord-264489-h1n9ywbd 48 20 ) ) -RRB- cord-264489-h1n9ywbd 48 21 in in IN cord-264489-h1n9ywbd 48 22 the the DT cord-264489-h1n9ywbd 48 23 form form NN cord-264489-h1n9ywbd 48 24 of of IN cord-264489-h1n9ywbd 48 25 standard standard JJ cord-264489-h1n9ywbd 48 26 PDB PDB NNP cord-264489-h1n9ywbd 48 27 files file NNS cord-264489-h1n9ywbd 48 28 . . . cord-264489-h1n9ywbd 49 1 For for IN cord-264489-h1n9ywbd 49 2 structural structural JJ cord-264489-h1n9ywbd 49 3 studies study NNS cord-264489-h1n9ywbd 49 4 , , , cord-264489-h1n9ywbd 49 5 we -PRON- PRP cord-264489-h1n9ywbd 49 6 have have VBP cord-264489-h1n9ywbd 49 7 used use VBN cord-264489-h1n9ywbd 49 8 Nuclear Nuclear NNP cord-264489-h1n9ywbd 49 9 Magnetic Magnetic NNP cord-264489-h1n9ywbd 49 10 Resonance Resonance NNP cord-264489-h1n9ywbd 49 11 ( ( -LRB- cord-264489-h1n9ywbd 49 12 NMR NMR NNP cord-264489-h1n9ywbd 49 13 ) ) -RRB- cord-264489-h1n9ywbd 49 14 and and CC cord-264489-h1n9ywbd 49 15 X x NN cord-264489-h1n9ywbd 49 16 - - NN cord-264489-h1n9ywbd 49 17 ray ray NN cord-264489-h1n9ywbd 49 18 crystallographic crystallographic JJ cord-264489-h1n9ywbd 49 19 structures structure NNS cord-264489-h1n9ywbd 49 20 of of IN cord-264489-h1n9ywbd 49 21 the the DT cord-264489-h1n9ywbd 49 22 human human JJ cord-264489-h1n9ywbd 49 23 IL-18 IL-18 NNP cord-264489-h1n9ywbd 49 24 ligand ligand NN cord-264489-h1n9ywbd 49 25 - - HYPH cord-264489-h1n9ywbd 49 26 protein protein NN cord-264489-h1n9ywbd 49 27 1J0S.PDB 1j0s.pdb CD cord-264489-h1n9ywbd 50 1 ( ( -LRB- cord-264489-h1n9ywbd 50 2 Kato Kato NNP cord-264489-h1n9ywbd 50 3 et et NNP cord-264489-h1n9ywbd 50 4 al al NNP cord-264489-h1n9ywbd 50 5 . . NNP cord-264489-h1n9ywbd 50 6 2003 2003 CD cord-264489-h1n9ywbd 50 7 ) ) -RRB- cord-264489-h1n9ywbd 50 8 and and CC cord-264489-h1n9ywbd 50 9 3WO2.PDB 3wo2.pdb CD cord-264489-h1n9ywbd 50 10 , , , cord-264489-h1n9ywbd 51 1 ( ( -LRB- cord-264489-h1n9ywbd 51 2 Tsutsumi Tsutsumi NNP cord-264489-h1n9ywbd 51 3 et et NNP cord-264489-h1n9ywbd 51 4 al al NNP cord-264489-h1n9ywbd 51 5 . . NNP cord-264489-h1n9ywbd 51 6 2014 2014 CD cord-264489-h1n9ywbd 51 7 ) ) -RRB- cord-264489-h1n9ywbd 51 8 . . . cord-264489-h1n9ywbd 52 1 Additionally additionally RB cord-264489-h1n9ywbd 52 2 3WO3.PDB 3WO3.PDB NNP cord-264489-h1n9ywbd 52 3 and and CC cord-264489-h1n9ywbd 52 4 3WO4.PDB 3WO4.PDB NNP cord-264489-h1n9ywbd 52 5 , , , cord-264489-h1n9ywbd 52 6 the the DT cord-264489-h1n9ywbd 52 7 X x NN cord-264489-h1n9ywbd 52 8 - - NN cord-264489-h1n9ywbd 52 9 ray ray NN cord-264489-h1n9ywbd 52 10 crystallographic crystallographic JJ cord-264489-h1n9ywbd 52 11 structures structure NNS cord-264489-h1n9ywbd 52 12 of of IN cord-264489-h1n9ywbd 52 13 IL-18 IL-18 NNP cord-264489-h1n9ywbd 52 14 receptor receptor NN cord-264489-h1n9ywbd 52 15 bound bind VBN cord-264489-h1n9ywbd 52 16 IL-18 IL-18 NNP cord-264489-h1n9ywbd 52 17 and and CC cord-264489-h1n9ywbd 52 18 the the DT cord-264489-h1n9ywbd 52 19 ternary ternary JJ cord-264489-h1n9ywbd 52 20 signaling signal VBG cord-264489-h1n9ywbd 52 21 complex complex NN cord-264489-h1n9ywbd 52 22 of of IN cord-264489-h1n9ywbd 52 23 IL-18 IL-18 NNP cord-264489-h1n9ywbd 52 24 have have VBP cord-264489-h1n9ywbd 52 25 been be VBN cord-264489-h1n9ywbd 52 26 utilized utilize VBN cord-264489-h1n9ywbd 53 1 ( ( -LRB- cord-264489-h1n9ywbd 53 2 Tsutsumi Tsutsumi NNP cord-264489-h1n9ywbd 53 3 et et NNP cord-264489-h1n9ywbd 53 4 al al NNP cord-264489-h1n9ywbd 53 5 . . NNP cord-264489-h1n9ywbd 53 6 2014 2014 CD cord-264489-h1n9ywbd 53 7 ) ) -RRB- cord-264489-h1n9ywbd 53 8 . . . cord-264489-h1n9ywbd 54 1 The the DT cord-264489-h1n9ywbd 54 2 3F62.PDB 3f62.pdb CD cord-264489-h1n9ywbd 54 3 , , , cord-264489-h1n9ywbd 54 4 an an DT cord-264489-h1n9ywbd 54 5 IL-18 IL-18 NNP cord-264489-h1n9ywbd 54 6 complex complex JJ cord-264489-h1n9ywbd 54 7 with with IN cord-264489-h1n9ywbd 54 8 IL-18BP IL-18BP NNP cord-264489-h1n9ywbd 54 9 of of IN cord-264489-h1n9ywbd 54 10 Ectromelia Ectromelia NNP cord-264489-h1n9ywbd 54 11 virus virus NN cord-264489-h1n9ywbd 54 12 has have VBZ cord-264489-h1n9ywbd 54 13 also also RB cord-264489-h1n9ywbd 54 14 been be VBN cord-264489-h1n9ywbd 54 15 briefly briefly RB cord-264489-h1n9ywbd 54 16 mentioned mention VBN cord-264489-h1n9ywbd 54 17 ( ( -LRB- cord-264489-h1n9ywbd 54 18 Krumm Krumm NNP cord-264489-h1n9ywbd 54 19 et et FW cord-264489-h1n9ywbd 54 20 al al NNP cord-264489-h1n9ywbd 54 21 . . NNP cord-264489-h1n9ywbd 54 22 2008 2008 CD cord-264489-h1n9ywbd 54 23 ) ) -RRB- cord-264489-h1n9ywbd 54 24 . . . cord-264489-h1n9ywbd 55 1 The the DT cord-264489-h1n9ywbd 55 2 resolution resolution NN cord-264489-h1n9ywbd 55 3 values value NNS cord-264489-h1n9ywbd 55 4 for for IN cord-264489-h1n9ywbd 55 5 the the DT cord-264489-h1n9ywbd 55 6 X x NN cord-264489-h1n9ywbd 55 7 - - NN cord-264489-h1n9ywbd 55 8 ray ray NN cord-264489-h1n9ywbd 55 9 structures structure NNS cord-264489-h1n9ywbd 55 10 3WO2 3wo2 RB cord-264489-h1n9ywbd 55 11 , , , cord-264489-h1n9ywbd 55 12 3WO3 3wo3 CD cord-264489-h1n9ywbd 55 13 , , , cord-264489-h1n9ywbd 55 14 3WO4 3wo4 CD cord-264489-h1n9ywbd 55 15 and and CC cord-264489-h1n9ywbd 55 16 3F62 3f62 CD cord-264489-h1n9ywbd 55 17 are be VBP cord-264489-h1n9ywbd 55 18 2.33 2.33 CD cord-264489-h1n9ywbd 55 19 Å å NN cord-264489-h1n9ywbd 55 20 , , , cord-264489-h1n9ywbd 55 21 3.10 3.10 CD cord-264489-h1n9ywbd 55 22 Å å NN cord-264489-h1n9ywbd 55 23 , , , cord-264489-h1n9ywbd 55 24 3.10 3.10 CD cord-264489-h1n9ywbd 55 25 Å å NN cord-264489-h1n9ywbd 55 26 and and CC cord-264489-h1n9ywbd 55 27 2.00 2.00 CD cord-264489-h1n9ywbd 55 28 Å å NN cord-264489-h1n9ywbd 55 29 respectively respectively RB cord-264489-h1n9ywbd 55 30 . . . cord-264489-h1n9ywbd 56 1 Nanoscale Nanoscale NNP cord-264489-h1n9ywbd 56 2 Molecular Molecular NNP cord-264489-h1n9ywbd 56 3 Dynamics Dynamics NNP cord-264489-h1n9ywbd 56 4 ( ( -LRB- cord-264489-h1n9ywbd 56 5 NAMD NAMD NNP cord-264489-h1n9ywbd 56 6 ) ) -RRB- cord-264489-h1n9ywbd 56 7 and and CC cord-264489-h1n9ywbd 56 8 Visual Visual NNP cord-264489-h1n9ywbd 56 9 Molecular Molecular NNP cord-264489-h1n9ywbd 56 10 Dynamics Dynamics NNPS cord-264489-h1n9ywbd 56 11 ( ( -LRB- cord-264489-h1n9ywbd 56 12 VMD VMD NNP cord-264489-h1n9ywbd 56 13 ) ) -RRB- cord-264489-h1n9ywbd 56 14 programs program NNS cord-264489-h1n9ywbd 56 15 were be VBD cord-264489-h1n9ywbd 56 16 used use VBN cord-264489-h1n9ywbd 56 17 for for IN cord-264489-h1n9ywbd 56 18 time time NN cord-264489-h1n9ywbd 56 19 - - HYPH cord-264489-h1n9ywbd 56 20 based base VBN cord-264489-h1n9ywbd 56 21 simulations simulation NNS cord-264489-h1n9ywbd 56 22 ( ( -LRB- cord-264489-h1n9ywbd 56 23 Humphrey Humphrey NNP cord-264489-h1n9ywbd 56 24 et et NNP cord-264489-h1n9ywbd 56 25 al al NNP cord-264489-h1n9ywbd 56 26 . . . cord-264489-h1n9ywbd 56 27 1996 1996 CD cord-264489-h1n9ywbd 56 28 ; ; : cord-264489-h1n9ywbd 56 29 Phillips Phillips NNP cord-264489-h1n9ywbd 56 30 et et NNP cord-264489-h1n9ywbd 56 31 al al NNP cord-264489-h1n9ywbd 56 32 . . NNP cord-264489-h1n9ywbd 56 33 2005 2005 CD cord-264489-h1n9ywbd 56 34 ) ) -RRB- cord-264489-h1n9ywbd 56 35 , , , cord-264489-h1n9ywbd 56 36 and and CC cord-264489-h1n9ywbd 56 37 the the DT cord-264489-h1n9ywbd 56 38 J J NNP cord-264489-h1n9ywbd 56 39 o o NN cord-264489-h1n9ywbd 56 40 u u NN cord-264489-h1n9ywbd 56 41 r r NN cord-264489-h1n9ywbd 56 42 n n NN cord-264489-h1n9ywbd 56 43 a a DT cord-264489-h1n9ywbd 56 44 l l NN cord-264489-h1n9ywbd 56 45 P p NN cord-264489-h1n9ywbd 56 46 r r NN cord-264489-h1n9ywbd 56 47 e e NN cord-264489-h1n9ywbd 56 48 -p -p NN cord-264489-h1n9ywbd 56 49 r r NN cord-264489-h1n9ywbd 56 50 o o NN cord-264489-h1n9ywbd 56 51 o o NN cord-264489-h1n9ywbd 56 52 f f NN cord-264489-h1n9ywbd 56 53 aligned align VBN cord-264489-h1n9ywbd 56 54 sequences sequence NNS cord-264489-h1n9ywbd 56 55 were be VBD cord-264489-h1n9ywbd 56 56 studied study VBN cord-264489-h1n9ywbd 56 57 with with IN cord-264489-h1n9ywbd 56 58 Molecular Molecular NNP cord-264489-h1n9ywbd 56 59 Evolutionary Evolutionary NNP cord-264489-h1n9ywbd 56 60 Genetics Genetics NNP cord-264489-h1n9ywbd 56 61 Analysis Analysis NNP cord-264489-h1n9ywbd 56 62 ( ( -LRB- cord-264489-h1n9ywbd 56 63 MEGA MEGA NNP cord-264489-h1n9ywbd 56 64 7 7 CD cord-264489-h1n9ywbd 56 65 ) ) -RRB- cord-264489-h1n9ywbd 56 66 ( ( -LRB- cord-264489-h1n9ywbd 56 67 Kumar Kumar NNP cord-264489-h1n9ywbd 56 68 et et NNP cord-264489-h1n9ywbd 56 69 al al NNP cord-264489-h1n9ywbd 56 70 . . . cord-264489-h1n9ywbd 56 71 2016 2016 CD cord-264489-h1n9ywbd 56 72 ) ) -RRB- cord-264489-h1n9ywbd 56 73 . . . cord-264489-h1n9ywbd 57 1 IL-18 IL-18 NNP cord-264489-h1n9ywbd 57 2 interactome interactome NNP cord-264489-h1n9ywbd 57 3 analyses analysis NNS cord-264489-h1n9ywbd 57 4 were be VBD cord-264489-h1n9ywbd 57 5 performed perform VBN cord-264489-h1n9ywbd 57 6 using use VBG cord-264489-h1n9ywbd 57 7 the the DT cord-264489-h1n9ywbd 57 8 Cytoscope Cytoscope NNP cord-264489-h1n9ywbd 57 9 package package NN cord-264489-h1n9ywbd 57 10 ( ( -LRB- cord-264489-h1n9ywbd 57 11 Shannon Shannon NNP cord-264489-h1n9ywbd 57 12 et et NNP cord-264489-h1n9ywbd 57 13 al al NNP cord-264489-h1n9ywbd 57 14 . . NNP cord-264489-h1n9ywbd 57 15 2003 2003 CD cord-264489-h1n9ywbd 57 16 ) ) -RRB- cord-264489-h1n9ywbd 57 17 , , , cord-264489-h1n9ywbd 57 18 and and CC cord-264489-h1n9ywbd 57 19 3D 3D NNP cord-264489-h1n9ywbd 57 20 protein protein NN cord-264489-h1n9ywbd 57 21 graphics graphic NNS cord-264489-h1n9ywbd 57 22 were be VBD cord-264489-h1n9ywbd 57 23 developed develop VBN cord-264489-h1n9ywbd 57 24 with with IN cord-264489-h1n9ywbd 57 25 Biovia Biovia NNP cord-264489-h1n9ywbd 57 26 Discovery Discovery NNP cord-264489-h1n9ywbd 57 27 Studio Studio NNP cord-264489-h1n9ywbd 57 28 Visualizer Visualizer NNP cord-264489-h1n9ywbd 57 29 , , , cord-264489-h1n9ywbd 57 30 v16.1.0.15350 v16.1.0.15350 NNP cord-264489-h1n9ywbd 57 31 ( ( -LRB- cord-264489-h1n9ywbd 57 32 Dassault Dassault NNP cord-264489-h1n9ywbd 57 33 Systèmes Systèmes NNP cord-264489-h1n9ywbd 57 34 BIOVIA BIOVIA NNP cord-264489-h1n9ywbd 57 35 Discovery Discovery NNP cord-264489-h1n9ywbd 57 36 Studio Studio NNP cord-264489-h1n9ywbd 57 37 Modeling Modeling NNP cord-264489-h1n9ywbd 57 38 Environment Environment NNP cord-264489-h1n9ywbd 57 39 2015 2015 CD cord-264489-h1n9ywbd 57 40 ) ) -RRB- cord-264489-h1n9ywbd 57 41 . . . cord-264489-h1n9ywbd 58 1 The the DT cord-264489-h1n9ywbd 58 2 plots plot NNS cord-264489-h1n9ywbd 58 3 were be VBD cord-264489-h1n9ywbd 58 4 constructed construct VBN cord-264489-h1n9ywbd 58 5 with with IN cord-264489-h1n9ywbd 58 6 Origin Origin NNP cord-264489-h1n9ywbd 58 7 ( ( -LRB- cord-264489-h1n9ywbd 58 8 OriginLab OriginLab NNP cord-264489-h1n9ywbd 58 9 Corporation Corporation NNP cord-264489-h1n9ywbd 58 10 2016 2016 CD cord-264489-h1n9ywbd 58 11 ) ) -RRB- cord-264489-h1n9ywbd 58 12 . . . cord-264489-h1n9ywbd 59 1 The the DT cord-264489-h1n9ywbd 59 2 experimental experimental JJ cord-264489-h1n9ywbd 59 3 simulation simulation NN cord-264489-h1n9ywbd 59 4 setup setup NN cord-264489-h1n9ywbd 59 5 for for IN cord-264489-h1n9ywbd 59 6 IL-18 IL-18 NNP cord-264489-h1n9ywbd 59 7 and and CC cord-264489-h1n9ywbd 59 8 IL-18 IL-18 NNP cord-264489-h1n9ywbd 59 9 / / SYM cord-264489-h1n9ywbd 59 10 IL-18R IL-18R NNP cord-264489-h1n9ywbd 59 11 were be VBD cord-264489-h1n9ywbd 59 12 similar similar JJ cord-264489-h1n9ywbd 59 13 to to IN cord-264489-h1n9ywbd 59 14 those those DT cord-264489-h1n9ywbd 59 15 reported report VBN cord-264489-h1n9ywbd 59 16 previously previously RB cord-264489-h1n9ywbd 59 17 ( ( -LRB- cord-264489-h1n9ywbd 59 18 Roy Roy NNP cord-264489-h1n9ywbd 59 19 2016a 2016a CD cord-264489-h1n9ywbd 59 20 ( ( -LRB- cord-264489-h1n9ywbd 59 21 Roy Roy NNP cord-264489-h1n9ywbd 59 22 , , , cord-264489-h1n9ywbd 59 23 2016b 2016b CD cord-264489-h1n9ywbd 59 24 ( ( -LRB- cord-264489-h1n9ywbd 59 25 Roy Roy NNP cord-264489-h1n9ywbd 59 26 , , , cord-264489-h1n9ywbd 59 27 2017 2017 CD cord-264489-h1n9ywbd 59 28 ( ( -LRB- cord-264489-h1n9ywbd 59 29 Roy Roy NNP cord-264489-h1n9ywbd 59 30 , , , cord-264489-h1n9ywbd 59 31 2019a 2019a CD cord-264489-h1n9ywbd 59 32 ( ( -LRB- cord-264489-h1n9ywbd 59 33 Roy Roy NNP cord-264489-h1n9ywbd 59 34 , , , cord-264489-h1n9ywbd 59 35 2019b 2019b CD cord-264489-h1n9ywbd 59 36 ( ( -LRB- cord-264489-h1n9ywbd 59 37 Roy Roy NNP cord-264489-h1n9ywbd 59 38 , , , cord-264489-h1n9ywbd 59 39 2020 2020 CD cord-264489-h1n9ywbd 59 40 . . . cord-264489-h1n9ywbd 60 1 Based base VBN cord-264489-h1n9ywbd 60 2 on on IN cord-264489-h1n9ywbd 60 3 the the DT cord-264489-h1n9ywbd 60 4 native native JJ cord-264489-h1n9ywbd 60 5 / / SYM cord-264489-h1n9ywbd 60 6 original original JJ cord-264489-h1n9ywbd 60 7 protein protein NN cord-264489-h1n9ywbd 60 8 , , , cord-264489-h1n9ywbd 60 9 the the DT cord-264489-h1n9ywbd 60 10 protein protein NN cord-264489-h1n9ywbd 60 11 structure structure NN cord-264489-h1n9ywbd 60 12 file file NN cord-264489-h1n9ywbd 60 13 ( ( -LRB- cord-264489-h1n9ywbd 60 14 PSF psf NN cord-264489-h1n9ywbd 60 15 ) ) -RRB- cord-264489-h1n9ywbd 60 16 along along IN cord-264489-h1n9ywbd 60 17 with with IN cord-264489-h1n9ywbd 60 18 a a DT cord-264489-h1n9ywbd 60 19 corresponding corresponding JJ cord-264489-h1n9ywbd 60 20 PDB PDB NNP cord-264489-h1n9ywbd 60 21 structure structure NN cord-264489-h1n9ywbd 60 22 was be VBD cord-264489-h1n9ywbd 60 23 generated generate VBN cord-264489-h1n9ywbd 60 24 . . . cord-264489-h1n9ywbd 61 1 The the DT cord-264489-h1n9ywbd 61 2 NAMD NAMD NNP cord-264489-h1n9ywbd 61 3 software software NN cord-264489-h1n9ywbd 61 4 required require VBD cord-264489-h1n9ywbd 61 5 both both CC cord-264489-h1n9ywbd 61 6 the the DT cord-264489-h1n9ywbd 61 7 PSF psf NN cord-264489-h1n9ywbd 61 8 and and CC cord-264489-h1n9ywbd 61 9 the the DT cord-264489-h1n9ywbd 61 10 modified modify VBN cord-264489-h1n9ywbd 61 11 PDB PDB NNP cord-264489-h1n9ywbd 61 12 files file NNS cord-264489-h1n9ywbd 61 13 as as IN cord-264489-h1n9ywbd 61 14 simulation simulation NN cord-264489-h1n9ywbd 61 15 inputs input NNS cord-264489-h1n9ywbd 61 16 , , , cord-264489-h1n9ywbd 61 17 and and CC cord-264489-h1n9ywbd 61 18 these these DT cord-264489-h1n9ywbd 61 19 files file NNS cord-264489-h1n9ywbd 61 20 were be VBD cord-264489-h1n9ywbd 61 21 created create VBN cord-264489-h1n9ywbd 61 22 using use VBG cord-264489-h1n9ywbd 61 23 the the DT cord-264489-h1n9ywbd 61 24 Automatic Automatic NNP cord-264489-h1n9ywbd 61 25 PSF PSF NNP cord-264489-h1n9ywbd 61 26 Builder Builder NNP cord-264489-h1n9ywbd 61 27 ( ( -LRB- cord-264489-h1n9ywbd 61 28 autoPSF autoPSF NNP cord-264489-h1n9ywbd 61 29 ) ) -RRB- cord-264489-h1n9ywbd 61 30 graphical graphical JJ cord-264489-h1n9ywbd 61 31 user user NN cord-264489-h1n9ywbd 61 32 interface interface NN cord-264489-h1n9ywbd 61 33 ( ( -LRB- cord-264489-h1n9ywbd 61 34 gui gui NNP cord-264489-h1n9ywbd 61 35 ) ) -RRB- cord-264489-h1n9ywbd 61 36 of of IN cord-264489-h1n9ywbd 61 37 VMD VMD NNP cord-264489-h1n9ywbd 61 38 . . . cord-264489-h1n9ywbd 62 1 The the DT cord-264489-h1n9ywbd 62 2 topology topology NN cord-264489-h1n9ywbd 62 3 file file NN cord-264489-h1n9ywbd 62 4 , , , cord-264489-h1n9ywbd 62 5 PSF PSF NNP cord-264489-h1n9ywbd 62 6 had have VBD cord-264489-h1n9ywbd 62 7 all all PDT cord-264489-h1n9ywbd 62 8 the the DT cord-264489-h1n9ywbd 62 9 structural structural JJ cord-264489-h1n9ywbd 62 10 information information NN cord-264489-h1n9ywbd 62 11 while while IN cord-264489-h1n9ywbd 62 12 the the DT cord-264489-h1n9ywbd 62 13 modified modify VBN cord-264489-h1n9ywbd 62 14 PDB PDB NNP cord-264489-h1n9ywbd 62 15 file file NN cord-264489-h1n9ywbd 62 16 contained contain VBD cord-264489-h1n9ywbd 62 17 the the DT cord-264489-h1n9ywbd 62 18 predicted predict VBN cord-264489-h1n9ywbd 62 19 hydrogen hydrogen NN cord-264489-h1n9ywbd 62 20 atoms atom NNS cord-264489-h1n9ywbd 62 21 coordinates coordinate VBZ cord-264489-h1n9ywbd 62 22 . . . cord-264489-h1n9ywbd 63 1 The the DT cord-264489-h1n9ywbd 63 2 solvated solvated JJ cord-264489-h1n9ywbd 63 3 and and CC cord-264489-h1n9ywbd 63 4 neutralized neutralize VBD cord-264489-h1n9ywbd 63 5 protein protein NN cord-264489-h1n9ywbd 63 6 structures structure NNS cord-264489-h1n9ywbd 63 7 were be VBD cord-264489-h1n9ywbd 63 8 obtained obtain VBN cord-264489-h1n9ywbd 63 9 using use VBG cord-264489-h1n9ywbd 63 10 solvate solvate NN cord-264489-h1n9ywbd 63 11 and and CC cord-264489-h1n9ywbd 63 12 ionize ionize VB cord-264489-h1n9ywbd 63 13 gui gui NN cord-264489-h1n9ywbd 63 14 of of IN cord-264489-h1n9ywbd 63 15 VMD VMD NNP cord-264489-h1n9ywbd 63 16 , , , cord-264489-h1n9ywbd 63 17 where where WRB cord-264489-h1n9ywbd 63 18 a a DT cord-264489-h1n9ywbd 63 19 0.15mol 0.15mol CD cord-264489-h1n9ywbd 63 20 / / SYM cord-264489-h1n9ywbd 63 21 L l NN cord-264489-h1n9ywbd 63 22 concentration concentration NN cord-264489-h1n9ywbd 63 23 of of IN cord-264489-h1n9ywbd 63 24 NaCl NaCl NNP cord-264489-h1n9ywbd 63 25 was be VBD cord-264489-h1n9ywbd 63 26 used use VBN cord-264489-h1n9ywbd 63 27 for for IN cord-264489-h1n9ywbd 63 28 system system NN cord-264489-h1n9ywbd 63 29 neutralization neutralization NN cord-264489-h1n9ywbd 63 30 . . . cord-264489-h1n9ywbd 64 1 Energy energy NN cord-264489-h1n9ywbd 64 2 minimization minimization NN cord-264489-h1n9ywbd 64 3 for for IN cord-264489-h1n9ywbd 64 4 the the DT cord-264489-h1n9ywbd 64 5 system system NN cord-264489-h1n9ywbd 64 6 was be VBD cord-264489-h1n9ywbd 64 7 performed perform VBN cord-264489-h1n9ywbd 64 8 in in IN cord-264489-h1n9ywbd 64 9 10,000 10,000 CD cord-264489-h1n9ywbd 64 10 steps step NNS cord-264489-h1n9ywbd 64 11 using use VBG cord-264489-h1n9ywbd 64 12 the the DT cord-264489-h1n9ywbd 64 13 NPT NPT NNP cord-264489-h1n9ywbd 64 14 ensemble ensemble NN cord-264489-h1n9ywbd 64 15 . . . cord-264489-h1n9ywbd 65 1 The the DT cord-264489-h1n9ywbd 65 2 final final JJ cord-264489-h1n9ywbd 65 3 production production NN cord-264489-h1n9ywbd 65 4 run run NN cord-264489-h1n9ywbd 65 5 was be VBD cord-264489-h1n9ywbd 65 6 carried carry VBN cord-264489-h1n9ywbd 65 7 out out RP cord-264489-h1n9ywbd 65 8 for for IN cord-264489-h1n9ywbd 65 9 20 20 CD cord-264489-h1n9ywbd 65 10 ns n NNS cord-264489-h1n9ywbd 65 11 at at IN cord-264489-h1n9ywbd 65 12 298 298 CD cord-264489-h1n9ywbd 65 13 K k NN cord-264489-h1n9ywbd 65 14 using use VBG cord-264489-h1n9ywbd 65 15 the the DT cord-264489-h1n9ywbd 65 16 NVT NVT NNP cord-264489-h1n9ywbd 65 17 ensemble ensemble NN cord-264489-h1n9ywbd 65 18 and and CC cord-264489-h1n9ywbd 65 19 employing employ VBG cord-264489-h1n9ywbd 65 20 the the DT cord-264489-h1n9ywbd 65 21 CHARMM CHARMM NNP cord-264489-h1n9ywbd 65 22 force force NN cord-264489-h1n9ywbd 65 23 field field NN cord-264489-h1n9ywbd 65 24 . . . cord-264489-h1n9ywbd 66 1 A a DT cord-264489-h1n9ywbd 66 2 combined combined JJ cord-264489-h1n9ywbd 66 3 version version NN cord-264489-h1n9ywbd 66 4 of of IN cord-264489-h1n9ywbd 66 5 CHARM22 CHARM22 NNP cord-264489-h1n9ywbd 66 6 / / SYM cord-264489-h1n9ywbd 66 7 CHARMM27 CHARMM27 NNP cord-264489-h1n9ywbd 66 8 / / SYM cord-264489-h1n9ywbd 66 9 CMAP CMAP NNP cord-264489-h1n9ywbd 66 10 force force NN cord-264489-h1n9ywbd 66 11 field field NN cord-264489-h1n9ywbd 66 12 was be VBD cord-264489-h1n9ywbd 66 13 used use VBN cord-264489-h1n9ywbd 66 14 for for IN cord-264489-h1n9ywbd 66 15 this this DT cord-264489-h1n9ywbd 66 16 purpose purpose NN cord-264489-h1n9ywbd 66 17 . . . cord-264489-h1n9ywbd 67 1 CHARM22 CHARM22 NNP cord-264489-h1n9ywbd 68 1 and and CC cord-264489-h1n9ywbd 68 2 CHARMM27 CHARMM27 NNP cord-264489-h1n9ywbd 68 3 provided provide VBD cord-264489-h1n9ywbd 68 4 the the DT cord-264489-h1n9ywbd 68 5 necessary necessary JJ cord-264489-h1n9ywbd 68 6 parameter parameter NN cord-264489-h1n9ywbd 68 7 files file NNS cord-264489-h1n9ywbd 68 8 for for IN cord-264489-h1n9ywbd 68 9 the the DT cord-264489-h1n9ywbd 68 10 proteins protein NNS cord-264489-h1n9ywbd 68 11 as as RB cord-264489-h1n9ywbd 68 12 well well RB cord-264489-h1n9ywbd 68 13 as as IN cord-264489-h1n9ywbd 68 14 the the DT cord-264489-h1n9ywbd 68 15 lipids lipid NNS cord-264489-h1n9ywbd 68 16 . . . cord-264489-h1n9ywbd 69 1 The the DT cord-264489-h1n9ywbd 69 2 proteins protein NNS cord-264489-h1n9ywbd 69 3 were be VBD cord-264489-h1n9ywbd 69 4 subjected subject VBN cord-264489-h1n9ywbd 69 5 to to IN cord-264489-h1n9ywbd 69 6 phi phi NNP cord-264489-h1n9ywbd 69 7 , , , cord-264489-h1n9ywbd 69 8 psi psi NNP cord-264489-h1n9ywbd 69 9 cross cross NNP cord-264489-h1n9ywbd 69 10 term term NN cord-264489-h1n9ywbd 69 11 map map NN cord-264489-h1n9ywbd 69 12 ( ( -LRB- cord-264489-h1n9ywbd 69 13 CMAP CMAP NNP cord-264489-h1n9ywbd 69 14 ) ) -RRB- cord-264489-h1n9ywbd 69 15 corrections correction NNS cord-264489-h1n9ywbd 69 16 ( ( -LRB- cord-264489-h1n9ywbd 69 17 a a DT cord-264489-h1n9ywbd 69 18 built build VBN cord-264489-h1n9ywbd 69 19 - - HYPH cord-264489-h1n9ywbd 69 20 in in RP cord-264489-h1n9ywbd 69 21 feature feature NN cord-264489-h1n9ywbd 69 22 of of IN cord-264489-h1n9ywbd 69 23 NAMD NAMD NNP cord-264489-h1n9ywbd 69 24 plugin plugin NN cord-264489-h1n9ywbd 69 25 gui gui NN cord-264489-h1n9ywbd 69 26 ) ) -RRB- cord-264489-h1n9ywbd 69 27 ; ; : cord-264489-h1n9ywbd 69 28 these these DT cord-264489-h1n9ywbd 69 29 force force NN cord-264489-h1n9ywbd 69 30 field field NN cord-264489-h1n9ywbd 69 31 parameter parameter NN cord-264489-h1n9ywbd 69 32 files file NNS cord-264489-h1n9ywbd 69 33 were be VBD cord-264489-h1n9ywbd 69 34 necessary necessary JJ cord-264489-h1n9ywbd 69 35 to to TO cord-264489-h1n9ywbd 69 36 calculate calculate VB cord-264489-h1n9ywbd 69 37 the the DT cord-264489-h1n9ywbd 69 38 energies energy NNS cord-264489-h1n9ywbd 69 39 . . . cord-264489-h1n9ywbd 70 1 The the DT cord-264489-h1n9ywbd 70 2 periodic periodic JJ cord-264489-h1n9ywbd 70 3 boundary boundary JJ cord-264489-h1n9ywbd 70 4 condition condition NN cord-264489-h1n9ywbd 70 5 with with IN cord-264489-h1n9ywbd 70 6 " " `` cord-264489-h1n9ywbd 70 7 Langevin Langevin NNP cord-264489-h1n9ywbd 70 8 on on IN cord-264489-h1n9ywbd 70 9 " " `` cord-264489-h1n9ywbd 70 10 control control NN cord-264489-h1n9ywbd 70 11 was be VBD cord-264489-h1n9ywbd 70 12 applied apply VBN cord-264489-h1n9ywbd 70 13 in in IN cord-264489-h1n9ywbd 70 14 each each DT cord-264489-h1n9ywbd 70 15 case case NN cord-264489-h1n9ywbd 70 16 , , , cord-264489-h1n9ywbd 70 17 with with IN cord-264489-h1n9ywbd 70 18 an an DT cord-264489-h1n9ywbd 70 19 " " `` cord-264489-h1n9ywbd 70 20 active active JJ cord-264489-h1n9ywbd 70 21 " " '' cord-264489-h1n9ywbd 70 22 setting setting NN cord-264489-h1n9ywbd 70 23 of of IN cord-264489-h1n9ywbd 70 24 particle particle NN cord-264489-h1n9ywbd 70 25 mesh mesh NNP cord-264489-h1n9ywbd 70 26 ewald ewald NNP cord-264489-h1n9ywbd 70 27 ( ( -LRB- cord-264489-h1n9ywbd 70 28 PME PME NNP cord-264489-h1n9ywbd 70 29 ) ) -RRB- cord-264489-h1n9ywbd 70 30 . . . cord-264489-h1n9ywbd 71 1 The the DT cord-264489-h1n9ywbd 71 2 Langevin Langevin NNP cord-264489-h1n9ywbd 71 3 Damping Damping NNP cord-264489-h1n9ywbd 71 4 was be VBD cord-264489-h1n9ywbd 71 5 set set VBN cord-264489-h1n9ywbd 71 6 to to IN cord-264489-h1n9ywbd 71 7 1 1 CD cord-264489-h1n9ywbd 71 8 . . . cord-264489-h1n9ywbd 72 1 The the DT cord-264489-h1n9ywbd 72 2 time time NN cord-264489-h1n9ywbd 72 3 steps step NNS cord-264489-h1n9ywbd 72 4 were be VBD cord-264489-h1n9ywbd 72 5 set set VBN cord-264489-h1n9ywbd 72 6 to to IN cord-264489-h1n9ywbd 72 7 1 1 CD cord-264489-h1n9ywbd 72 8 femtosecond femtosecond NN cord-264489-h1n9ywbd 72 9 ( ( -LRB- cord-264489-h1n9ywbd 72 10 fs fs NNP cord-264489-h1n9ywbd 72 11 ) ) -RRB- cord-264489-h1n9ywbd 72 12 , , , cord-264489-h1n9ywbd 72 13 with with IN cord-264489-h1n9ywbd 72 14 20 20 CD cord-264489-h1n9ywbd 72 15 steps step NNS cord-264489-h1n9ywbd 72 16 per per IN cord-264489-h1n9ywbd 72 17 cycle cycle NN cord-264489-h1n9ywbd 72 18 selected select VBN cord-264489-h1n9ywbd 72 19 . . . cord-264489-h1n9ywbd 73 1 For for IN cord-264489-h1n9ywbd 73 2 the the DT cord-264489-h1n9ywbd 73 3 basic basic JJ cord-264489-h1n9ywbd 73 4 dynamics dynamic NNS cord-264489-h1n9ywbd 73 5 , , , cord-264489-h1n9ywbd 73 6 the the DT cord-264489-h1n9ywbd 73 7 dielectric dielectric NN cord-264489-h1n9ywbd 73 8 value value NN cord-264489-h1n9ywbd 73 9 was be VBD cord-264489-h1n9ywbd 73 10 set set VBN cord-264489-h1n9ywbd 73 11 to to IN cord-264489-h1n9ywbd 73 12 1.0 1.0 CD cord-264489-h1n9ywbd 73 13 . . . cord-264489-h1n9ywbd 74 1 The the DT cord-264489-h1n9ywbd 74 2 periodic periodic JJ cord-264489-h1n9ywbd 74 3 cell cell NN cord-264489-h1n9ywbd 74 4 basis basis NN cord-264489-h1n9ywbd 74 5 and and CC cord-264489-h1n9ywbd 74 6 periodic periodic JJ cord-264489-h1n9ywbd 74 7 cell cell NN cord-264489-h1n9ywbd 74 8 center center NN cord-264489-h1n9ywbd 74 9 were be VBD cord-264489-h1n9ywbd 74 10 selected select VBN cord-264489-h1n9ywbd 74 11 according accord VBG cord-264489-h1n9ywbd 74 12 to to IN cord-264489-h1n9ywbd 74 13 the the DT cord-264489-h1n9ywbd 74 14 PDB PDB NNP cord-264489-h1n9ywbd 74 15 coordinates coordinate VBZ cord-264489-h1n9ywbd 74 16 . . . cord-264489-h1n9ywbd 75 1 The the DT cord-264489-h1n9ywbd 75 2 time time NN cord-264489-h1n9ywbd 75 3 frames frame NNS cord-264489-h1n9ywbd 75 4 of of IN cord-264489-h1n9ywbd 75 5 each each DT cord-264489-h1n9ywbd 75 6 system system NN cord-264489-h1n9ywbd 75 7 were be VBD cord-264489-h1n9ywbd 75 8 saved save VBN cord-264489-h1n9ywbd 75 9 as as IN cord-264489-h1n9ywbd 75 10 " " `` cord-264489-h1n9ywbd 75 11 DCD DCD NNP cord-264489-h1n9ywbd 75 12 " " '' cord-264489-h1n9ywbd 75 13 files file NNS cord-264489-h1n9ywbd 75 14 . . . cord-264489-h1n9ywbd 76 1 The the DT cord-264489-h1n9ywbd 76 2 output output NN cord-264489-h1n9ywbd 76 3 parameters parameter NNS cord-264489-h1n9ywbd 76 4 , , , cord-264489-h1n9ywbd 76 5 like like IN cord-264489-h1n9ywbd 76 6 DCD DCD NNP cord-264489-h1n9ywbd 76 7 / / SYM cord-264489-h1n9ywbd 76 8 XST XST NNP cord-264489-h1n9ywbd 76 9 output output NN cord-264489-h1n9ywbd 76 10 frequency frequency NN cord-264489-h1n9ywbd 76 11 , , , cord-264489-h1n9ywbd 76 12 energy energy NN cord-264489-h1n9ywbd 76 13 output output NN cord-264489-h1n9ywbd 76 14 frequency frequency NN cord-264489-h1n9ywbd 76 15 and and CC cord-264489-h1n9ywbd 76 16 restart restart VB cord-264489-h1n9ywbd 76 17 file file NN cord-264489-h1n9ywbd 76 18 frequency frequency NN cord-264489-h1n9ywbd 76 19 , , , cord-264489-h1n9ywbd 76 20 were be VBD cord-264489-h1n9ywbd 76 21 chosen choose VBN cord-264489-h1n9ywbd 76 22 according accord VBG cord-264489-h1n9ywbd 76 23 to to IN cord-264489-h1n9ywbd 76 24 system system NN cord-264489-h1n9ywbd 76 25 specifications specification NNS cord-264489-h1n9ywbd 76 26 . . . cord-264489-h1n9ywbd 77 1 Most Most JJS cord-264489-h1n9ywbd 77 2 of of IN cord-264489-h1n9ywbd 77 3 these these DT cord-264489-h1n9ywbd 77 4 parameters parameter NNS cord-264489-h1n9ywbd 77 5 were be VBD cord-264489-h1n9ywbd 77 6 kept keep VBN cord-264489-h1n9ywbd 77 7 at at IN cord-264489-h1n9ywbd 77 8 their -PRON- PRP$ cord-264489-h1n9ywbd 77 9 default default NN cord-264489-h1n9ywbd 77 10 values value NNS cord-264489-h1n9ywbd 77 11 incorporated incorporate VBN cord-264489-h1n9ywbd 77 12 in in IN cord-264489-h1n9ywbd 77 13 the the DT cord-264489-h1n9ywbd 77 14 NAMD NAMD NNP cord-264489-h1n9ywbd 77 15 gui gui NN cord-264489-h1n9ywbd 77 16 . . . cord-264489-h1n9ywbd 78 1 This this DT cord-264489-h1n9ywbd 78 2 simulation simulation NN cord-264489-h1n9ywbd 78 3 approach approach NN cord-264489-h1n9ywbd 78 4 is be VBZ cord-264489-h1n9ywbd 78 5 based base VBN cord-264489-h1n9ywbd 78 6 on on IN cord-264489-h1n9ywbd 78 7 the the DT cord-264489-h1n9ywbd 78 8 conformational conformational JJ cord-264489-h1n9ywbd 78 9 sampling sampling NN cord-264489-h1n9ywbd 78 10 of of IN cord-264489-h1n9ywbd 78 11 the the DT cord-264489-h1n9ywbd 78 12 predominant predominant NN cord-264489-h1n9ywbd 78 13 ( ( -LRB- cord-264489-h1n9ywbd 78 14 especially especially RB cord-264489-h1n9ywbd 78 15 early early JJ cord-264489-h1n9ywbd 78 16 - - HYPH cord-264489-h1n9ywbd 78 17 stage stage NN cord-264489-h1n9ywbd 78 18 ) ) -RRB- cord-264489-h1n9ywbd 79 1 structural structural JJ cord-264489-h1n9ywbd 79 2 changes change NNS cord-264489-h1n9ywbd 79 3 of of IN cord-264489-h1n9ywbd 79 4 the the DT cord-264489-h1n9ywbd 79 5 four four CD cord-264489-h1n9ywbd 79 6 systems system NNS cord-264489-h1n9ywbd 79 7 studied study VBN cord-264489-h1n9ywbd 79 8 here here RB cord-264489-h1n9ywbd 80 1 ( ( -LRB- cord-264489-h1n9ywbd 80 2 Chhatbar Chhatbar NNP cord-264489-h1n9ywbd 80 3 et et FW cord-264489-h1n9ywbd 80 4 al al NNP cord-264489-h1n9ywbd 80 5 . . . cord-264489-h1n9ywbd 81 1 2019 2019 CD cord-264489-h1n9ywbd 81 2 ; ; : cord-264489-h1n9ywbd 81 3 Dimić Dimić NNP cord-264489-h1n9ywbd 81 4 et et NNP cord-264489-h1n9ywbd 81 5 al al NNP cord-264489-h1n9ywbd 81 6 . . NNP cord-264489-h1n9ywbd 81 7 2020 2020 CD cord-264489-h1n9ywbd 81 8 ) ) -RRB- cord-264489-h1n9ywbd 81 9 . . . cord-264489-h1n9ywbd 82 1 The the DT cord-264489-h1n9ywbd 82 2 computational computational JJ cord-264489-h1n9ywbd 82 3 protocol protocol NN cord-264489-h1n9ywbd 82 4 was be VBD cord-264489-h1n9ywbd 82 5 designed design VBN cord-264489-h1n9ywbd 82 6 to to TO cord-264489-h1n9ywbd 82 7 obtain obtain VB cord-264489-h1n9ywbd 82 8 the the DT cord-264489-h1n9ywbd 82 9 basic basic JJ cord-264489-h1n9ywbd 82 10 frameworks framework NNS cord-264489-h1n9ywbd 82 11 for for IN cord-264489-h1n9ywbd 82 12 the the DT cord-264489-h1n9ywbd 82 13 IL-18 IL-18 NNP cord-264489-h1n9ywbd 82 14 ligand ligand NN cord-264489-h1n9ywbd 82 15 and and CC cord-264489-h1n9ywbd 82 16 the the DT cord-264489-h1n9ywbd 82 17 ligand ligand NN cord-264489-h1n9ywbd 82 18 bound bind VBN cord-264489-h1n9ywbd 82 19 holo holo NN cord-264489-h1n9ywbd 82 20 structures structure NNS cord-264489-h1n9ywbd 82 21 . . . cord-264489-h1n9ywbd 83 1 Additional additional JJ cord-264489-h1n9ywbd 83 2 computational computational JJ cord-264489-h1n9ywbd 83 3 details detail NNS cord-264489-h1n9ywbd 83 4 of of IN cord-264489-h1n9ywbd 83 5 the the DT cord-264489-h1n9ywbd 83 6 present present JJ cord-264489-h1n9ywbd 83 7 work work NN cord-264489-h1n9ywbd 83 8 have have VBP cord-264489-h1n9ywbd 83 9 been be VBN cord-264489-h1n9ywbd 83 10 described describe VBN cord-264489-h1n9ywbd 83 11 elsewhere elsewhere RB cord-264489-h1n9ywbd 84 1 ( ( -LRB- cord-264489-h1n9ywbd 84 2 Roy Roy NNP cord-264489-h1n9ywbd 84 3 2016a 2016a CD cord-264489-h1n9ywbd 84 4 ( ( -LRB- cord-264489-h1n9ywbd 84 5 Roy Roy NNP cord-264489-h1n9ywbd 84 6 , , , cord-264489-h1n9ywbd 84 7 2016b 2016b CD cord-264489-h1n9ywbd 84 8 ( ( -LRB- cord-264489-h1n9ywbd 84 9 Roy Roy NNP cord-264489-h1n9ywbd 84 10 , , , cord-264489-h1n9ywbd 84 11 2017 2017 CD cord-264489-h1n9ywbd 84 12 ( ( -LRB- cord-264489-h1n9ywbd 84 13 Roy Roy NNP cord-264489-h1n9ywbd 84 14 , , , cord-264489-h1n9ywbd 84 15 2019a 2019a CD cord-264489-h1n9ywbd 84 16 ( ( -LRB- cord-264489-h1n9ywbd 84 17 Roy Roy NNP cord-264489-h1n9ywbd 84 18 , , , cord-264489-h1n9ywbd 84 19 2019b 2019b CD cord-264489-h1n9ywbd 84 20 ( ( -LRB- cord-264489-h1n9ywbd 84 21 Roy Roy NNP cord-264489-h1n9ywbd 84 22 , , , cord-264489-h1n9ywbd 84 23 2020 2020 CD cord-264489-h1n9ywbd 84 24 . . . cord-264489-h1n9ywbd 85 1 Table table NN cord-264489-h1n9ywbd 85 2 S1 S1 NNP cord-264489-h1n9ywbd 85 3 has have VBZ cord-264489-h1n9ywbd 85 4 been be VBN cord-264489-h1n9ywbd 85 5 included include VBN cord-264489-h1n9ywbd 85 6 in in IN cord-264489-h1n9ywbd 85 7 the the DT cord-264489-h1n9ywbd 85 8 Supplementary Supplementary NNP cord-264489-h1n9ywbd 85 9 Data Data NNP cord-264489-h1n9ywbd 85 10 ( ( -LRB- cord-264489-h1n9ywbd 85 11 SD SD NNP cord-264489-h1n9ywbd 85 12 ) ) -RRB- cord-264489-h1n9ywbd 85 13 to to TO cord-264489-h1n9ywbd 85 14 list list VB cord-264489-h1n9ywbd 85 15 the the DT cord-264489-h1n9ywbd 85 16 abbreviations abbreviation NNS cord-264489-h1n9ywbd 85 17 of of IN cord-264489-h1n9ywbd 85 18 Fig.1 fig.1 NN cord-264489-h1n9ywbd 85 19 . . . cord-264489-h1n9ywbd 86 1 The the DT cord-264489-h1n9ywbd 86 2 PPI PPI NNP cord-264489-h1n9ywbd 86 3 is be VBZ cord-264489-h1n9ywbd 86 4 one one CD cord-264489-h1n9ywbd 86 5 of of IN cord-264489-h1n9ywbd 86 6 the the DT cord-264489-h1n9ywbd 86 7 most most RBS cord-264489-h1n9ywbd 86 8 valuable valuable JJ cord-264489-h1n9ywbd 86 9 tools tool NNS cord-264489-h1n9ywbd 86 10 for for IN cord-264489-h1n9ywbd 86 11 identifying identify VBG cord-264489-h1n9ywbd 86 12 the the DT cord-264489-h1n9ywbd 86 13 ligand ligand NN cord-264489-h1n9ywbd 86 14 - - HYPH cord-264489-h1n9ywbd 86 15 receptor receptor NN cord-264489-h1n9ywbd 86 16 interactions interaction NNS cord-264489-h1n9ywbd 86 17 and and CC cord-264489-h1n9ywbd 86 18 signaling signal VBG cord-264489-h1n9ywbd 86 19 cascades cascade NNS cord-264489-h1n9ywbd 87 1 ( ( -LRB- cord-264489-h1n9ywbd 87 2 Jiang Jiang NNP cord-264489-h1n9ywbd 87 3 et et FW cord-264489-h1n9ywbd 87 4 al al NNP cord-264489-h1n9ywbd 87 5 . . . cord-264489-h1n9ywbd 87 6 2015 2015 CD cord-264489-h1n9ywbd 88 1 ; ; : cord-264489-h1n9ywbd 88 2 Wang Wang NNP cord-264489-h1n9ywbd 88 3 et et NNP cord-264489-h1n9ywbd 88 4 al al NNP cord-264489-h1n9ywbd 88 5 . . . cord-264489-h1n9ywbd 88 6 2018 2018 CD cord-264489-h1n9ywbd 88 7 ) ) -RRB- cord-264489-h1n9ywbd 88 8 . . . cord-264489-h1n9ywbd 89 1 The the DT cord-264489-h1n9ywbd 89 2 results result NNS cord-264489-h1n9ywbd 89 3 have have VBP cord-264489-h1n9ywbd 89 4 been be VBN cord-264489-h1n9ywbd 89 5 generated generate VBN cord-264489-h1n9ywbd 89 6 by by IN cord-264489-h1n9ywbd 89 7 Cytoscape Cytoscape NNP cord-264489-h1n9ywbd 89 8 , , , cord-264489-h1n9ywbd 89 9 on on IN cord-264489-h1n9ywbd 89 10 the the DT cord-264489-h1n9ywbd 89 11 basis basis NN cord-264489-h1n9ywbd 89 12 of of IN cord-264489-h1n9ywbd 89 13 experimental experimental JJ cord-264489-h1n9ywbd 89 14 data datum NNS cord-264489-h1n9ywbd 89 15 , , , cord-264489-h1n9ywbd 89 16 as as RB cord-264489-h1n9ywbd 89 17 well well RB cord-264489-h1n9ywbd 89 18 as as IN cord-264489-h1n9ywbd 89 19 manually manually RB cord-264489-h1n9ywbd 89 20 curated curate VBN cord-264489-h1n9ywbd 89 21 results result NNS cord-264489-h1n9ywbd 89 22 obtained obtain VBN cord-264489-h1n9ywbd 89 23 using use VBG cord-264489-h1n9ywbd 89 24 the the DT cord-264489-h1n9ywbd 89 25 Mentha Mentha NNP cord-264489-h1n9ywbd 89 26 database database NN cord-264489-h1n9ywbd 89 27 ( ( -LRB- cord-264489-h1n9ywbd 89 28 Calderone Calderone NNP cord-264489-h1n9ywbd 89 29 et et NNP cord-264489-h1n9ywbd 89 30 al al NNP cord-264489-h1n9ywbd 89 31 . . NNP cord-264489-h1n9ywbd 89 32 2013 2013 CD cord-264489-h1n9ywbd 89 33 ) ) -RRB- cord-264489-h1n9ywbd 89 34 . . . cord-264489-h1n9ywbd 90 1 Mentha Mentha NNP cord-264489-h1n9ywbd 90 2 compiles compile VBZ cord-264489-h1n9ywbd 90 3 the the DT cord-264489-h1n9ywbd 90 4 proteins protein NNS cord-264489-h1n9ywbd 90 5 ' ' POS cord-264489-h1n9ywbd 90 6 key key JJ cord-264489-h1n9ywbd 90 7 interaction interaction NN cord-264489-h1n9ywbd 90 8 data datum NNS cord-264489-h1n9ywbd 90 9 J J NNP cord-264489-h1n9ywbd 90 10 o o NN cord-264489-h1n9ywbd 90 11 u u NN cord-264489-h1n9ywbd 90 12 r r NN cord-264489-h1n9ywbd 90 13 n n NN cord-264489-h1n9ywbd 90 14 a a DT cord-264489-h1n9ywbd 90 15 l l NN cord-264489-h1n9ywbd 90 16 P p NN cord-264489-h1n9ywbd 90 17 r r NN cord-264489-h1n9ywbd 90 18 e e NN cord-264489-h1n9ywbd 90 19 -p -p NN cord-264489-h1n9ywbd 91 1 r r NNP cord-264489-h1n9ywbd 91 2 o o NN cord-264489-h1n9ywbd 91 3 o o NN cord-264489-h1n9ywbd 91 4 f f NN cord-264489-h1n9ywbd 91 5 collected collect VBN cord-264489-h1n9ywbd 91 6 by by IN cord-264489-h1n9ywbd 91 7 International International NNP cord-264489-h1n9ywbd 91 8 Molecular Molecular NNP cord-264489-h1n9ywbd 91 9 Exchange Exchange NNP cord-264489-h1n9ywbd 91 10 ( ( -LRB- cord-264489-h1n9ywbd 91 11 IMEx IMEx NNP cord-264489-h1n9ywbd 91 12 ) ) -RRB- cord-264489-h1n9ywbd 91 13 databases database NNS cord-264489-h1n9ywbd 91 14 ( ( -LRB- cord-264489-h1n9ywbd 91 15 Orchard Orchard NNP cord-264489-h1n9ywbd 91 16 et et NNP cord-264489-h1n9ywbd 91 17 al al NNP cord-264489-h1n9ywbd 91 18 . . NNP cord-264489-h1n9ywbd 91 19 2012 2012 CD cord-264489-h1n9ywbd 91 20 ) ) -RRB- cord-264489-h1n9ywbd 91 21 and and CC cord-264489-h1n9ywbd 91 22 analyzes analyze VBZ cord-264489-h1n9ywbd 91 23 the the DT cord-264489-h1n9ywbd 91 24 experimental experimental JJ cord-264489-h1n9ywbd 91 25 data datum NNS cord-264489-h1n9ywbd 91 26 with with IN cord-264489-h1n9ywbd 91 27 a a DT cord-264489-h1n9ywbd 91 28 thorough thorough JJ cord-264489-h1n9ywbd 91 29 annotation annotation NN cord-264489-h1n9ywbd 91 30 . . . cord-264489-h1n9ywbd 92 1 The the DT cord-264489-h1n9ywbd 92 2 interactions interaction NNS cord-264489-h1n9ywbd 92 3 considered consider VBN cord-264489-h1n9ywbd 92 4 here here RB cord-264489-h1n9ywbd 92 5 are be VBP cord-264489-h1n9ywbd 92 6 dominated dominate VBN cord-264489-h1n9ywbd 92 7 by by IN cord-264489-h1n9ywbd 92 8 physical physical JJ cord-264489-h1n9ywbd 92 9 association association NNP cord-264489-h1n9ywbd 92 10 ( ( -LRB- cord-264489-h1n9ywbd 92 11 as as IN cord-264489-h1n9ywbd 92 12 those those DT cord-264489-h1n9ywbd 92 13 studied study VBN cord-264489-h1n9ywbd 92 14 in in IN cord-264489-h1n9ywbd 92 15 affinity affinity NN cord-264489-h1n9ywbd 92 16 chromatography chromatography NN cord-264489-h1n9ywbd 92 17 , , , cord-264489-h1n9ywbd 92 18 two two CD cord-264489-h1n9ywbd 92 19 hybrid hybrid JJ cord-264489-h1n9ywbd 92 20 array array NN cord-264489-h1n9ywbd 92 21 and and CC cord-264489-h1n9ywbd 92 22 two two CD cord-264489-h1n9ywbd 92 23 hybrid hybrid JJ cord-264489-h1n9ywbd 92 24 prey prey NN cord-264489-h1n9ywbd 92 25 pooling pooling NN cord-264489-h1n9ywbd 92 26 ) ) -RRB- cord-264489-h1n9ywbd 92 27 , , , cord-264489-h1n9ywbd 92 28 direct direct JJ cord-264489-h1n9ywbd 92 29 interactions interaction NNS cord-264489-h1n9ywbd 92 30 ( ( -LRB- cord-264489-h1n9ywbd 92 31 pull pull VB cord-264489-h1n9ywbd 92 32 down down RP cord-264489-h1n9ywbd 92 33 , , , cord-264489-h1n9ywbd 92 34 cross cross NN cord-264489-h1n9ywbd 92 35 - - JJ cord-264489-h1n9ywbd 92 36 linking link VBG cord-264489-h1n9ywbd 92 37 / / SYM cord-264489-h1n9ywbd 92 38 molecular molecular JJ cord-264489-h1n9ywbd 92 39 sieving sieving NN cord-264489-h1n9ywbd 92 40 / / SYM cord-264489-h1n9ywbd 92 41 Xray Xray NNP cord-264489-h1n9ywbd 92 42 crystallography crystallography NN cord-264489-h1n9ywbd 92 43 / / SYM cord-264489-h1n9ywbd 92 44 enzymatic enzymatic JJ cord-264489-h1n9ywbd 92 45 study study NN cord-264489-h1n9ywbd 92 46 and and CC cord-264489-h1n9ywbd 92 47 two two CD cord-264489-h1n9ywbd 92 48 hybrid hybrid NN cord-264489-h1n9ywbd 92 49 ) ) -RRB- cord-264489-h1n9ywbd 92 50 , , , cord-264489-h1n9ywbd 92 51 physical physical JJ cord-264489-h1n9ywbd 92 52 interactions interaction NNS cord-264489-h1n9ywbd 92 53 ( ( -LRB- cord-264489-h1n9ywbd 92 54 biochemical biochemical JJ cord-264489-h1n9ywbd 92 55 ) ) -RRB- cord-264489-h1n9ywbd 92 56 and and CC cord-264489-h1n9ywbd 92 57 antitag antitag NN cord-264489-h1n9ywbd 92 58 co co NN cord-264489-h1n9ywbd 92 59 - - NN cord-264489-h1n9ywbd 92 60 immunoprecipitation immunoprecipitation JJ cord-264489-h1n9ywbd 92 61 . . . cord-264489-h1n9ywbd 93 1 The the DT cord-264489-h1n9ywbd 93 2 confidence confidence NN cord-264489-h1n9ywbd 93 3 scores score NNS cord-264489-h1n9ywbd 93 4 are be VBP cord-264489-h1n9ywbd 93 5 based base VBN cord-264489-h1n9ywbd 93 6 on on IN cord-264489-h1n9ywbd 93 7 a a DT cord-264489-h1n9ywbd 93 8 scale scale NN cord-264489-h1n9ywbd 93 9 of of IN cord-264489-h1n9ywbd 93 10 0 0 CD cord-264489-h1n9ywbd 93 11 to to IN cord-264489-h1n9ywbd 93 12 1 1 CD cord-264489-h1n9ywbd 93 13 where where WRB cord-264489-h1n9ywbd 93 14 these these DT cord-264489-h1n9ywbd 93 15 values value NNS cord-264489-h1n9ywbd 93 16 reflect reflect VBP cord-264489-h1n9ywbd 93 17 the the DT cord-264489-h1n9ywbd 93 18 number number NN cord-264489-h1n9ywbd 93 19 of of IN cord-264489-h1n9ywbd 93 20 functional functional JJ cord-264489-h1n9ywbd 93 21 PPIs ppi NNS cord-264489-h1n9ywbd 93 22 curated curate VBN cord-264489-h1n9ywbd 93 23 by by IN cord-264489-h1n9ywbd 93 24 experimental experimental JJ cord-264489-h1n9ywbd 93 25 procedures procedure NNS cord-264489-h1n9ywbd 93 26 as as RB cord-264489-h1n9ywbd 93 27 well well RB cord-264489-h1n9ywbd 93 28 as as IN cord-264489-h1n9ywbd 93 29 based base VBN cord-264489-h1n9ywbd 93 30 on on IN cord-264489-h1n9ywbd 93 31 data datum NNS cord-264489-h1n9ywbd 93 32 from from IN cord-264489-h1n9ywbd 93 33 scientific scientific JJ cord-264489-h1n9ywbd 93 34 literature literature NN cord-264489-h1n9ywbd 93 35 . . . cord-264489-h1n9ywbd 94 1 Nonetheless nonetheless RB cord-264489-h1n9ywbd 94 2 there there EX cord-264489-h1n9ywbd 94 3 is be VBZ cord-264489-h1n9ywbd 94 4 always always RB cord-264489-h1n9ywbd 94 5 a a DT cord-264489-h1n9ywbd 94 6 possibility possibility NN cord-264489-h1n9ywbd 94 7 that that IN cord-264489-h1n9ywbd 94 8 a a DT cord-264489-h1n9ywbd 94 9 few few JJ cord-264489-h1n9ywbd 94 10 interactions interaction NNS cord-264489-h1n9ywbd 94 11 may may MD cord-264489-h1n9ywbd 94 12 be be VB cord-264489-h1n9ywbd 94 13 absent absent JJ cord-264489-h1n9ywbd 94 14 . . . cord-264489-h1n9ywbd 95 1 The the DT cord-264489-h1n9ywbd 95 2 score score NN cord-264489-h1n9ywbd 95 3 between between IN cord-264489-h1n9ywbd 95 4 IL-18 IL-18 NNP cord-264489-h1n9ywbd 95 5 and and CC cord-264489-h1n9ywbd 95 6 IL-18R1 il-18r1 CD cord-264489-h1n9ywbd 95 7 interaction interaction NN cord-264489-h1n9ywbd 95 8 is be VBZ cord-264489-h1n9ywbd 95 9 0.539 0.539 CD cord-264489-h1n9ywbd 95 10 , , , cord-264489-h1n9ywbd 95 11 which which WDT cord-264489-h1n9ywbd 95 12 is be VBZ cord-264489-h1n9ywbd 95 13 slightly slightly RB cord-264489-h1n9ywbd 95 14 higher high JJR cord-264489-h1n9ywbd 95 15 than than IN cord-264489-h1n9ywbd 95 16 the the DT cord-264489-h1n9ywbd 95 17 usual usual JJ cord-264489-h1n9ywbd 95 18 upper upper JJ cord-264489-h1n9ywbd 95 19 bound bind VBN cord-264489-h1n9ywbd 95 20 of of IN cord-264489-h1n9ywbd 95 21 a a DT cord-264489-h1n9ywbd 95 22 " " `` cord-264489-h1n9ywbd 95 23 medium medium JJ cord-264489-h1n9ywbd 95 24 " " '' cord-264489-h1n9ywbd 95 25 range range NN cord-264489-h1n9ywbd 95 26 . . . cord-264489-h1n9ywbd 96 1 The the DT cord-264489-h1n9ywbd 96 2 score score NN cord-264489-h1n9ywbd 96 3 near near IN cord-264489-h1n9ywbd 96 4 the the DT cord-264489-h1n9ywbd 96 5 range range NN cord-264489-h1n9ywbd 96 6 of of IN cord-264489-h1n9ywbd 96 7 1 1 CD cord-264489-h1n9ywbd 96 8 denotes denote VBZ cord-264489-h1n9ywbd 96 9 many many JJ cord-264489-h1n9ywbd 96 10 PPIs ppi NNS cord-264489-h1n9ywbd 96 11 as as IN cord-264489-h1n9ywbd 96 12 published publish VBN cord-264489-h1n9ywbd 96 13 in in IN cord-264489-h1n9ywbd 96 14 scientific scientific JJ cord-264489-h1n9ywbd 96 15 literature literature NN cord-264489-h1n9ywbd 96 16 whereas whereas IN cord-264489-h1n9ywbd 96 17 lower low JJR cord-264489-h1n9ywbd 96 18 range range NN cord-264489-h1n9ywbd 96 19 represents represent VBZ cord-264489-h1n9ywbd 96 20 fewer few JJR cord-264489-h1n9ywbd 96 21 experimental experimental JJ cord-264489-h1n9ywbd 96 22 processes process NNS cord-264489-h1n9ywbd 96 23 . . . cord-264489-h1n9ywbd 97 1 The the DT cord-264489-h1n9ywbd 97 2 PPIs ppi NNS cord-264489-h1n9ywbd 97 3 identified identify VBN cord-264489-h1n9ywbd 97 4 between between IN cord-264489-h1n9ywbd 97 5 IL-18 IL-18 NNP cord-264489-h1n9ywbd 97 6 and and CC cord-264489-h1n9ywbd 97 7 IL-18R1 IL-18R1 NNP cord-264489-h1n9ywbd 97 8 are be VBP cord-264489-h1n9ywbd 97 9 primarily primarily RB cord-264489-h1n9ywbd 97 10 of of IN cord-264489-h1n9ywbd 97 11 physical physical JJ cord-264489-h1n9ywbd 97 12 / / SYM cord-264489-h1n9ywbd 97 13 biochemical biochemical JJ cord-264489-h1n9ywbd 97 14 origins origin NNS cord-264489-h1n9ywbd 97 15 . . . cord-264489-h1n9ywbd 98 1 The the DT cord-264489-h1n9ywbd 98 2 high high JJ cord-264489-h1n9ywbd 98 3 affinity affinity NN cord-264489-h1n9ywbd 98 4 signaling signal VBG cord-264489-h1n9ywbd 99 1 complex complex JJ cord-264489-h1n9ywbd 99 2 IL-18 IL-18 NNP cord-264489-h1n9ywbd 99 3 / / SYM cord-264489-h1n9ywbd 99 4 IL-18R IL-18R -LRB- cord-264489-h1n9ywbd 99 5 initially initially RB cord-264489-h1n9ywbd 99 6 activates activate VBZ cord-264489-h1n9ywbd 99 7 toll toll NN cord-264489-h1n9ywbd 99 8 like like IN cord-264489-h1n9ywbd 99 9 receptor receptor NN cord-264489-h1n9ywbd 99 10 ( ( -LRB- cord-264489-h1n9ywbd 99 11 TLR TLR NNP cord-264489-h1n9ywbd 99 12 ) ) -RRB- cord-264489-h1n9ywbd 99 13 domains domain NNS cord-264489-h1n9ywbd 99 14 , , , cord-264489-h1n9ywbd 99 15 which which WDT cord-264489-h1n9ywbd 99 16 , , , cord-264489-h1n9ywbd 99 17 via via IN cord-264489-h1n9ywbd 99 18 the the DT cord-264489-h1n9ywbd 99 19 recruitment recruitment NN cord-264489-h1n9ywbd 99 20 of of IN cord-264489-h1n9ywbd 99 21 certain certain JJ cord-264489-h1n9ywbd 99 22 adaptor adaptor NN cord-264489-h1n9ywbd 99 23 and and CC cord-264489-h1n9ywbd 99 24 recruiter recruiter NN cord-264489-h1n9ywbd 99 25 molecules molecule NNS cord-264489-h1n9ywbd 99 26 , , , cord-264489-h1n9ywbd 99 27 ultimately ultimately RB cord-264489-h1n9ywbd 99 28 trigger trigger VBP cord-264489-h1n9ywbd 99 29 the the DT cord-264489-h1n9ywbd 99 30 NF NF NNP cord-264489-h1n9ywbd 99 31 and and CC cord-264489-h1n9ywbd 99 32 MAPK MAPK NNP cord-264489-h1n9ywbd 99 33 dependent dependent JJ cord-264489-h1n9ywbd 99 34 pathways pathway NNS cord-264489-h1n9ywbd 99 35 . . . cord-264489-h1n9ywbd 100 1 Binding bind VBG cord-264489-h1n9ywbd 100 2 of of IN cord-264489-h1n9ywbd 100 3 IL-18BP IL-18BP NNP cord-264489-h1n9ywbd 100 4 to to IN cord-264489-h1n9ywbd 100 5 IL-18 IL-18 NNP cord-264489-h1n9ywbd 100 6 leads lead VBZ cord-264489-h1n9ywbd 100 7 to to IN cord-264489-h1n9ywbd 100 8 neutralization neutralization NN cord-264489-h1n9ywbd 100 9 , , , cord-264489-h1n9ywbd 100 10 and and CC cord-264489-h1n9ywbd 100 11 the the DT cord-264489-h1n9ywbd 100 12 IL-18 IL-18 NNP cord-264489-h1n9ywbd 100 13 / / SYM cord-264489-h1n9ywbd 100 14 IL-18R IL-18R NNP cord-264489-h1n9ywbd 100 15 signaling signal VBG cord-264489-h1n9ywbd 100 16 cascades cascade NNS cord-264489-h1n9ywbd 100 17 are be VBP cord-264489-h1n9ywbd 100 18 no no RB cord-264489-h1n9ywbd 100 19 longer long RBR cord-264489-h1n9ywbd 100 20 induced induce VBN cord-264489-h1n9ywbd 100 21 ( ( -LRB- cord-264489-h1n9ywbd 100 22 Kimura Kimura NNP cord-264489-h1n9ywbd 100 23 et et FW cord-264489-h1n9ywbd 100 24 al al NNP cord-264489-h1n9ywbd 100 25 . . NNP cord-264489-h1n9ywbd 100 26 2008 2008 CD cord-264489-h1n9ywbd 100 27 ; ; . cord-264489-h1n9ywbd 101 1 Krumm Krumm NNP cord-264489-h1n9ywbd 101 2 et et FW cord-264489-h1n9ywbd 101 3 al al NNP cord-264489-h1n9ywbd 101 4 . . . cord-264489-h1n9ywbd 102 1 2008 2008 CD cord-264489-h1n9ywbd 102 2 ; ; : cord-264489-h1n9ywbd 102 3 Dinarello Dinarello NNP cord-264489-h1n9ywbd 102 4 et et NNP cord-264489-h1n9ywbd 102 5 al al NNP cord-264489-h1n9ywbd 102 6 . . NNP cord-264489-h1n9ywbd 102 7 2013 2013 CD cord-264489-h1n9ywbd 102 8 ) ) -RRB- cord-264489-h1n9ywbd 102 9 . . . cord-264489-h1n9ywbd 103 1 The the DT cord-264489-h1n9ywbd 103 2 biological biological JJ cord-264489-h1n9ywbd 103 3 sequence sequence NN cord-264489-h1n9ywbd 103 4 alignment alignment NN cord-264489-h1n9ywbd 103 5 between between IN cord-264489-h1n9ywbd 104 1 IL-18 IL-18 NNP cord-264489-h1n9ywbd 104 2 / / SYM cord-264489-h1n9ywbd 104 3 IL-1 IL-1 NNP cord-264489-h1n9ywbd 104 4 and and CC cord-264489-h1n9ywbd 104 5 IL-18R1 il-18r1 CD cord-264489-h1n9ywbd 104 6 / / SYM cord-264489-h1n9ywbd 104 7 IL-1R il-1r CD cord-264489-h1n9ywbd 104 8 type type NN cord-264489-h1n9ywbd 104 9 1 1 CD cord-264489-h1n9ywbd 104 10 and and CC cord-264489-h1n9ywbd 104 11 2 2 CD cord-264489-h1n9ywbd 104 12 are be VBP cord-264489-h1n9ywbd 105 1 ( ( -LRB- cord-264489-h1n9ywbd 105 2 Kato Kato NNP cord-264489-h1n9ywbd 105 3 et et NNP cord-264489-h1n9ywbd 105 4 al al NNP cord-264489-h1n9ywbd 105 5 . . . cord-264489-h1n9ywbd 106 1 2003 2003 CD cord-264489-h1n9ywbd 106 2 ; ; : cord-264489-h1n9ywbd 106 3 Yamamoto Yamamoto NNP cord-264489-h1n9ywbd 106 4 et et NNP cord-264489-h1n9ywbd 106 5 al al NNP cord-264489-h1n9ywbd 106 6 . . . cord-264489-h1n9ywbd 107 1 2004 2004 CD cord-264489-h1n9ywbd 107 2 ; ; : cord-264489-h1n9ywbd 107 3 Tsutsumi Tsutsumi NNP cord-264489-h1n9ywbd 107 4 et et NNP cord-264489-h1n9ywbd 107 5 al al NNP cord-264489-h1n9ywbd 107 6 . . NNP cord-264489-h1n9ywbd 107 7 2014 2014 CD cord-264489-h1n9ywbd 107 8 ) ) -RRB- cord-264489-h1n9ywbd 107 9 . . . cord-264489-h1n9ywbd 108 1 The the DT cord-264489-h1n9ywbd 108 2 alignment alignment NN cord-264489-h1n9ywbd 108 3 schemes scheme NNS cord-264489-h1n9ywbd 108 4 presented present VBN cord-264489-h1n9ywbd 108 5 here here RB cord-264489-h1n9ywbd 108 6 ( ( -LRB- cord-264489-h1n9ywbd 108 7 Figs fig NNS cord-264489-h1n9ywbd 108 8 . . . cord-264489-h1n9ywbd 109 1 S1 S1 NNP cord-264489-h1n9ywbd 109 2 and and CC cord-264489-h1n9ywbd 109 3 S2 S2 NNP cord-264489-h1n9ywbd 109 4 ) ) -RRB- cord-264489-h1n9ywbd 109 5 follow follow VBP cord-264489-h1n9ywbd 109 6 the the DT cord-264489-h1n9ywbd 109 7 format format NN cord-264489-h1n9ywbd 109 8 used use VBN cord-264489-h1n9ywbd 109 9 by by IN cord-264489-h1n9ywbd 109 10 them -PRON- PRP cord-264489-h1n9ywbd 109 11 . . . cord-264489-h1n9ywbd 110 1 These these DT cord-264489-h1n9ywbd 110 2 multiple multiple JJ cord-264489-h1n9ywbd 110 3 sequence sequence NN cord-264489-h1n9ywbd 110 4 alignments alignment NNS cord-264489-h1n9ywbd 110 5 are be VBP cord-264489-h1n9ywbd 110 6 generated generate VBN cord-264489-h1n9ywbd 110 7 using use VBG cord-264489-h1n9ywbd 110 8 the the DT cord-264489-h1n9ywbd 110 9 clustal clustal NNP cord-264489-h1n9ywbd 110 10 omega omega NN cord-264489-h1n9ywbd 110 11 ( ( -LRB- cord-264489-h1n9ywbd 110 12 clustalW clustalW NNP cord-264489-h1n9ywbd 110 13 ) ) -RRB- cord-264489-h1n9ywbd 110 14 algorithm algorithm NN cord-264489-h1n9ywbd 110 15 ( ( -LRB- cord-264489-h1n9ywbd 110 16 Sievers Sievers NNP cord-264489-h1n9ywbd 110 17 et et NNP cord-264489-h1n9ywbd 110 18 al al NNP cord-264489-h1n9ywbd 110 19 . . NNP cord-264489-h1n9ywbd 110 20 2011 2011 CD cord-264489-h1n9ywbd 110 21 ) ) -RRB- cord-264489-h1n9ywbd 110 22 of of IN cord-264489-h1n9ywbd 110 23 MEGA mega JJ cord-264489-h1n9ywbd 110 24 software software NN cord-264489-h1n9ywbd 110 25 , , , cord-264489-h1n9ywbd 110 26 ( ( -LRB- cord-264489-h1n9ywbd 110 27 Kumar Kumar NNP cord-264489-h1n9ywbd 110 28 et et NNP cord-264489-h1n9ywbd 110 29 al al NNP cord-264489-h1n9ywbd 110 30 . . . cord-264489-h1n9ywbd 110 31 2016 2016 CD cord-264489-h1n9ywbd 110 32 ) ) -RRB- cord-264489-h1n9ywbd 110 33 along along IN cord-264489-h1n9ywbd 110 34 with with IN cord-264489-h1n9ywbd 110 35 the the DT cord-264489-h1n9ywbd 110 36 incorporation incorporation NN cord-264489-h1n9ywbd 110 37 of of IN cord-264489-h1n9ywbd 110 38 the the DT cord-264489-h1n9ywbd 110 39 Blocks Blocks NNP cord-264489-h1n9ywbd 110 40 Substitution Substitution NNP cord-264489-h1n9ywbd 110 41 Matrix Matrix NNP cord-264489-h1n9ywbd 110 42 ( ( -LRB- cord-264489-h1n9ywbd 110 43 BLOSUM BLOSUM NNP cord-264489-h1n9ywbd 110 44 ) ) -RRB- cord-264489-h1n9ywbd 111 1 ( ( -LRB- cord-264489-h1n9ywbd 111 2 Henikoff Henikoff NNP cord-264489-h1n9ywbd 111 3 and and CC cord-264489-h1n9ywbd 111 4 Henikoff Henikoff NNP cord-264489-h1n9ywbd 111 5 1992 1992 CD cord-264489-h1n9ywbd 112 1 ( ( -LRB- cord-264489-h1n9ywbd 112 2 Yamamoto Yamamoto NNP cord-264489-h1n9ywbd 112 3 et et NNP cord-264489-h1n9ywbd 112 4 al al NNP cord-264489-h1n9ywbd 112 5 . . . cord-264489-h1n9ywbd 112 6 2004 2004 CD cord-264489-h1n9ywbd 112 7 ) ) -RRB- cord-264489-h1n9ywbd 112 8 . . . cord-264489-h1n9ywbd 113 1 In in IN cord-264489-h1n9ywbd 113 2 IL-1 IL-1 NNP cord-264489-h1n9ywbd 113 3 the the DT cord-264489-h1n9ywbd 113 4 S s NN cord-264489-h1n9ywbd 113 5 - - HYPH cord-264489-h1n9ywbd 113 6 glutathionylation glutathionylation NN cord-264489-h1n9ywbd 113 7 of of IN cord-264489-h1n9ywbd 113 8 a a DT cord-264489-h1n9ywbd 113 9 highly highly RB cord-264489-h1n9ywbd 113 10 conserved conserve VBN cord-264489-h1n9ywbd 113 11 Cys Cys NNP cord-264489-h1n9ywbd 113 12 residue residue NN cord-264489-h1n9ywbd 113 13 is be VBZ cord-264489-h1n9ywbd 113 14 considered consider VBN cord-264489-h1n9ywbd 113 15 as as IN cord-264489-h1n9ywbd 113 16 a a DT cord-264489-h1n9ywbd 113 17 therapeutic therapeutic JJ cord-264489-h1n9ywbd 113 18 target target NN cord-264489-h1n9ywbd 113 19 ( ( -LRB- cord-264489-h1n9ywbd 113 20 Zhang Zhang NNP cord-264489-h1n9ywbd 113 21 et et NNP cord-264489-h1n9ywbd 113 22 al al NNP cord-264489-h1n9ywbd 113 23 . . . cord-264489-h1n9ywbd 113 24 2017 2017 CD cord-264489-h1n9ywbd 113 25 ) ) -RRB- cord-264489-h1n9ywbd 113 26 . . . cord-264489-h1n9ywbd 114 1 At at IN cord-264489-h1n9ywbd 114 2 this this DT cord-264489-h1n9ywbd 114 3 time time NN cord-264489-h1n9ywbd 114 4 , , , cord-264489-h1n9ywbd 114 5 the the DT cord-264489-h1n9ywbd 114 6 possibility possibility NN cord-264489-h1n9ywbd 114 7 of of IN cord-264489-h1n9ywbd 114 8 utilizing utilize VBG cord-264489-h1n9ywbd 114 9 the the DT cord-264489-h1n9ywbd 114 10 conserved conserve VBN cord-264489-h1n9ywbd 114 11 IL-18 IL-18 NNP cord-264489-h1n9ywbd 114 12 or or CC cord-264489-h1n9ywbd 114 13 IL-18R IL-18R NNP cord-264489-h1n9ywbd 114 14 Cys Cys NNP cord-264489-h1n9ywbd 114 15 residues residue NNS cord-264489-h1n9ywbd 114 16 as as IN cord-264489-h1n9ywbd 114 17 potential potential JJ cord-264489-h1n9ywbd 114 18 drug drug NN cord-264489-h1n9ywbd 114 19 targets target NNS cord-264489-h1n9ywbd 114 20 for for IN cord-264489-h1n9ywbd 114 21 various various JJ cord-264489-h1n9ywbd 114 22 infectious infectious JJ cord-264489-h1n9ywbd 114 23 or or CC cord-264489-h1n9ywbd 114 24 chronic chronic JJ cord-264489-h1n9ywbd 114 25 diseases disease NNS cord-264489-h1n9ywbd 114 26 remains remain VBZ cord-264489-h1n9ywbd 114 27 a a DT cord-264489-h1n9ywbd 114 28 subject subject NN cord-264489-h1n9ywbd 114 29 of of IN cord-264489-h1n9ywbd 114 30 future future JJ cord-264489-h1n9ywbd 114 31 investigations investigation NNS cord-264489-h1n9ywbd 114 32 . . . cord-264489-h1n9ywbd 115 1 ligand ligand NN cord-264489-h1n9ywbd 115 2 - - HYPH cord-264489-h1n9ywbd 115 3 protein protein NN cord-264489-h1n9ywbd 115 4 ( ( -LRB- cord-264489-h1n9ywbd 115 5 Kato Kato NNP cord-264489-h1n9ywbd 115 6 et et NNP cord-264489-h1n9ywbd 115 7 al al NNP cord-264489-h1n9ywbd 115 8 . . NNP cord-264489-h1n9ywbd 115 9 2003 2003 CD cord-264489-h1n9ywbd 115 10 ) ) -RRB- cord-264489-h1n9ywbd 115 11 . . . cord-264489-h1n9ywbd 116 1 This this DT cord-264489-h1n9ywbd 116 2 is be VBZ cord-264489-h1n9ywbd 116 3 a a DT cord-264489-h1n9ywbd 116 4 single single JJ cord-264489-h1n9ywbd 116 5 subunit subunit NN cord-264489-h1n9ywbd 116 6 protein protein NN cord-264489-h1n9ywbd 116 7 that that WDT cord-264489-h1n9ywbd 116 8 mostly mostly RB cord-264489-h1n9ywbd 116 9 contains contain VBZ cord-264489-h1n9ywbd 116 10 sheets sheets CD cord-264489-h1n9ywbd 116 11 . . . cord-264489-h1n9ywbd 117 1 The the DT cord-264489-h1n9ywbd 117 2 undefined undefined JJ cord-264489-h1n9ywbd 117 3 loop loop NN cord-264489-h1n9ywbd 117 4 structure structure NN cord-264489-h1n9ywbd 117 5 in in IN cord-264489-h1n9ywbd 117 6 1J0S 1j0s CD cord-264489-h1n9ywbd 117 7 consists consist NNS cord-264489-h1n9ywbd 117 8 of of IN cord-264489-h1n9ywbd 117 9 residues residue NNS cord-264489-h1n9ywbd 117 10 34 34 CD cord-264489-h1n9ywbd 117 11 - - SYM cord-264489-h1n9ywbd 117 12 42 42 CD cord-264489-h1n9ywbd 117 13 . . . cord-264489-h1n9ywbd 118 1 Fig Fig NNP cord-264489-h1n9ywbd 118 2 . . . cord-264489-h1n9ywbd 118 3 4A 4a CD cord-264489-h1n9ywbd 118 4 ( ( -LRB- cord-264489-h1n9ywbd 118 5 Kato Kato NNP cord-264489-h1n9ywbd 118 6 et et NNP cord-264489-h1n9ywbd 118 7 al al NNP cord-264489-h1n9ywbd 118 8 . . NNP cord-264489-h1n9ywbd 118 9 2003 2003 CD cord-264489-h1n9ywbd 118 10 ) ) -RRB- cord-264489-h1n9ywbd 118 11 . . . cord-264489-h1n9ywbd 119 1 These these DT cord-264489-h1n9ywbd 119 2 residues residue NNS cord-264489-h1n9ywbd 119 3 have have VBP cord-264489-h1n9ywbd 119 4 been be VBN cord-264489-h1n9ywbd 119 5 highlighted highlight VBN cord-264489-h1n9ywbd 119 6 in in IN cord-264489-h1n9ywbd 119 7 a a DT cord-264489-h1n9ywbd 119 8 " " `` cord-264489-h1n9ywbd 119 9 green green JJ cord-264489-h1n9ywbd 119 10 stick stick NN cord-264489-h1n9ywbd 119 11 " " '' cord-264489-h1n9ywbd 119 12 mode mode NN cord-264489-h1n9ywbd 119 13 within within IN cord-264489-h1n9ywbd 119 14 the the DT cord-264489-h1n9ywbd 119 15 primary primary JJ cord-264489-h1n9ywbd 119 16 interactions interaction NNS cord-264489-h1n9ywbd 119 17 site site NN cord-264489-h1n9ywbd 119 18 of of IN cord-264489-h1n9ywbd 119 19 IL-18 IL-18 NNP cord-264489-h1n9ywbd 119 20 and and CC cord-264489-h1n9ywbd 119 21 the the DT cord-264489-h1n9ywbd 119 22 IL-18 IL-18 NNP cord-264489-h1n9ywbd 119 23 bound bind VBN cord-264489-h1n9ywbd 119 24 receptor receptor NN cord-264489-h1n9ywbd 119 25 structures structure NNS cord-264489-h1n9ywbd 119 26 . . . cord-264489-h1n9ywbd 120 1 3WO2 3wo2 LS cord-264489-h1n9ywbd 120 2 is be VBZ cord-264489-h1n9ywbd 120 3 the the DT cord-264489-h1n9ywbd 120 4 X X NNP cord-264489-h1n9ywbd 120 5 ray ray NN cord-264489-h1n9ywbd 120 6 crystal crystal NN cord-264489-h1n9ywbd 120 7 structure structure NN cord-264489-h1n9ywbd 120 8 of of IN cord-264489-h1n9ywbd 120 9 wildtype wildtype NN cord-264489-h1n9ywbd 120 10 ( ( -LRB- cord-264489-h1n9ywbd 120 11 wt wt NN cord-264489-h1n9ywbd 120 12 ) ) -RRB- cord-264489-h1n9ywbd 120 13 IL-18 IL-18 NNP cord-264489-h1n9ywbd 120 14 ligand ligand NN cord-264489-h1n9ywbd 120 15 - - HYPH cord-264489-h1n9ywbd 120 16 protein protein NN cord-264489-h1n9ywbd 120 17 ( ( -LRB- cord-264489-h1n9ywbd 120 18 Tsutsumi Tsutsumi NNP cord-264489-h1n9ywbd 120 19 et et FW cord-264489-h1n9ywbd 120 20 al al NNP cord-264489-h1n9ywbd 120 21 . . . cord-264489-h1n9ywbd 121 1 2014 2014 CD cord-264489-h1n9ywbd 121 2 SD SD NNP cord-264489-h1n9ywbd 121 3 Table Table NNP cord-264489-h1n9ywbd 121 4 S3 s3 NN cord-264489-h1n9ywbd 121 5 . . . cord-264489-h1n9ywbd 122 1 The the DT cord-264489-h1n9ywbd 122 2 X x NN cord-264489-h1n9ywbd 122 3 ray ray NN cord-264489-h1n9ywbd 122 4 crystal crystal NN cord-264489-h1n9ywbd 122 5 structure structure NN cord-264489-h1n9ywbd 122 6 of of IN cord-264489-h1n9ywbd 122 7 the the DT cord-264489-h1n9ywbd 122 8 IL-18 IL-18 NNP cord-264489-h1n9ywbd 122 9 signaling signal VBG cord-264489-h1n9ywbd 122 10 complex complex NN cord-264489-h1n9ywbd 122 11 , , , cord-264489-h1n9ywbd 122 12 3WO4 3wo4 CD cord-264489-h1n9ywbd 122 13 , , , cord-264489-h1n9ywbd 122 14 is be VBZ cord-264489-h1n9ywbd 122 15 displayed display VBN cord-264489-h1n9ywbd 122 16 in in IN cord-264489-h1n9ywbd 122 17 Fig Fig NNP cord-264489-h1n9ywbd 122 18 . . . cord-264489-h1n9ywbd 123 1 4D 4d LS cord-264489-h1n9ywbd 123 2 ( ( -LRB- cord-264489-h1n9ywbd 123 3 Tsutsumi Tsutsumi NNP cord-264489-h1n9ywbd 123 4 et et NNP cord-264489-h1n9ywbd 123 5 al al NNP cord-264489-h1n9ywbd 123 6 . . NNP cord-264489-h1n9ywbd 123 7 2014 2014 CD cord-264489-h1n9ywbd 123 8 ) ) -RRB- cord-264489-h1n9ywbd 123 9 . . . cord-264489-h1n9ywbd 124 1 This this DT cord-264489-h1n9ywbd 124 2 core core NN cord-264489-h1n9ywbd 124 3 signaling signal VBG cord-264489-h1n9ywbd 124 4 complex complex NN cord-264489-h1n9ywbd 124 5 consists consist VBZ cord-264489-h1n9ywbd 124 6 of of IN cord-264489-h1n9ywbd 124 7 a a DT cord-264489-h1n9ywbd 124 8 ternary ternary JJ cord-264489-h1n9ywbd 124 9 structure structure NN cord-264489-h1n9ywbd 124 10 of of IN cord-264489-h1n9ywbd 124 11 IL-18 IL-18 NNP cord-264489-h1n9ywbd 124 12 4D 4d CD cord-264489-h1n9ywbd 124 13 . . . cord-264489-h1n9ywbd 125 1 These these DT cord-264489-h1n9ywbd 125 2 primary primary JJ cord-264489-h1n9ywbd 125 3 site site NN cord-264489-h1n9ywbd 125 4 III iii CD cord-264489-h1n9ywbd 125 5 residues residue NNS cord-264489-h1n9ywbd 125 6 have have VBP cord-264489-h1n9ywbd 125 7 also also RB cord-264489-h1n9ywbd 125 8 been be VBN cord-264489-h1n9ywbd 125 9 highlighted highlight VBN cord-264489-h1n9ywbd 125 10 accordingly accordingly RB cord-264489-h1n9ywbd 125 11 in in IN cord-264489-h1n9ywbd 125 12 SD SD NNP cord-264489-h1n9ywbd 125 13 Table Table NNP cord-264489-h1n9ywbd 125 14 S4 S4 NNP cord-264489-h1n9ywbd 125 15 . . . cord-264489-h1n9ywbd 126 1 3F62 3F62 NNP cord-264489-h1n9ywbd 126 2 , , , cord-264489-h1n9ywbd 126 3 an an DT cord-264489-h1n9ywbd 126 4 IL-18 IL-18 NNP cord-264489-h1n9ywbd 126 5 complex complex JJ cord-264489-h1n9ywbd 126 6 with with IN cord-264489-h1n9ywbd 126 7 the the DT cord-264489-h1n9ywbd 126 8 IL-18 IL-18 NNP cord-264489-h1n9ywbd 126 9 binding bind VBG cord-264489-h1n9ywbd 126 10 protein protein NN cord-264489-h1n9ywbd 126 11 ( ( -LRB- cord-264489-h1n9ywbd 126 12 IL-18BP IL-18BP NNP cord-264489-h1n9ywbd 126 13 ) ) -RRB- cord-264489-h1n9ywbd 126 14 of of IN cord-264489-h1n9ywbd 126 15 Ectromelia Ectromelia NNP cord-264489-h1n9ywbd 126 16 virus virus NN cord-264489-h1n9ywbd 126 17 is be VBZ cord-264489-h1n9ywbd 126 18 displayed display VBN cord-264489-h1n9ywbd 126 19 in in IN cord-264489-h1n9ywbd 126 20 Fig Fig NNP cord-264489-h1n9ywbd 126 21 . . . cord-264489-h1n9ywbd 126 22 4F 4F NNP cord-264489-h1n9ywbd 126 23 . . . cord-264489-h1n9ywbd 127 1 This this DT cord-264489-h1n9ywbd 127 2 structure structure NN cord-264489-h1n9ywbd 127 3 of of IN cord-264489-h1n9ywbd 127 4 3F62 3F62 NNP cord-264489-h1n9ywbd 127 5 has have VBZ cord-264489-h1n9ywbd 127 6 been be VBN cord-264489-h1n9ywbd 127 7 described describe VBN cord-264489-h1n9ywbd 127 8 by by IN cord-264489-h1n9ywbd 127 9 Krumm Krumm NNP cord-264489-h1n9ywbd 127 10 et et NNP cord-264489-h1n9ywbd 127 11 al al NNP cord-264489-h1n9ywbd 127 12 . . . cord-264489-h1n9ywbd 128 1 ( ( -LRB- cord-264489-h1n9ywbd 128 2 Krumm Krumm NNP cord-264489-h1n9ywbd 128 3 et et FW cord-264489-h1n9ywbd 128 4 al al NNP cord-264489-h1n9ywbd 128 5 . . NNP cord-264489-h1n9ywbd 128 6 2008 2008 CD cord-264489-h1n9ywbd 128 7 ) ) -RRB- cord-264489-h1n9ywbd 128 8 . . . cord-264489-h1n9ywbd 129 1 Part part NN cord-264489-h1n9ywbd 129 2 of of IN cord-264489-h1n9ywbd 129 3 the the DT cord-264489-h1n9ywbd 129 4 IL-18R il-18r NN cord-264489-h1n9ywbd 129 5 resembles resemble VBZ cord-264489-h1n9ywbd 129 6 IL-18BP IL-18BP NNP cord-264489-h1n9ywbd 129 7 and and CC cord-264489-h1n9ywbd 129 8 thus thus RB cord-264489-h1n9ywbd 129 9 , , , cord-264489-h1n9ywbd 129 10 the the DT cord-264489-h1n9ywbd 129 11 binding binding NN cord-264489-h1n9ywbd 129 12 of of IN cord-264489-h1n9ywbd 129 13 IL-18BP IL-18BP NNP cord-264489-h1n9ywbd 129 14 with with IN cord-264489-h1n9ywbd 129 15 IL-18 IL-18 NNP cord-264489-h1n9ywbd 129 16 blocks block VBZ cord-264489-h1n9ywbd 129 17 the the DT cord-264489-h1n9ywbd 129 18 interactions interaction NNS cord-264489-h1n9ywbd 129 19 between between IN cord-264489-h1n9ywbd 129 20 IL-18 IL-18 NNP cord-264489-h1n9ywbd 129 21 and and CC cord-264489-h1n9ywbd 129 22 IL-18R IL-18R NNP cord-264489-h1n9ywbd 129 23 ( ( -LRB- cord-264489-h1n9ywbd 129 24 Krumm Krumm NNP cord-264489-h1n9ywbd 129 25 et et FW cord-264489-h1n9ywbd 129 26 al al NNP cord-264489-h1n9ywbd 129 27 . . . cord-264489-h1n9ywbd 129 28 2008 2008 CD cord-264489-h1n9ywbd 130 1 Buried bury VBN cord-264489-h1n9ywbd 130 2 Cys Cys NNP cord-264489-h1n9ywbd 130 3 residues residue NNS cord-264489-h1n9ywbd 130 4 play play VBP cord-264489-h1n9ywbd 130 5 a a DT cord-264489-h1n9ywbd 130 6 leading leading JJ cord-264489-h1n9ywbd 130 7 role role NN cord-264489-h1n9ywbd 130 8 in in IN cord-264489-h1n9ywbd 130 9 determining determine VBG cord-264489-h1n9ywbd 130 10 the the DT cord-264489-h1n9ywbd 130 11 protein protein NN cord-264489-h1n9ywbd 130 12 's 's POS cord-264489-h1n9ywbd 130 13 structural structural JJ cord-264489-h1n9ywbd 130 14 stability stability NN cord-264489-h1n9ywbd 130 15 , , , cord-264489-h1n9ywbd 130 16 since since IN cord-264489-h1n9ywbd 130 17 buried bury VBN cord-264489-h1n9ywbd 130 18 Cys Cys NNP cord-264489-h1n9ywbd 130 19 residues residue NNS cord-264489-h1n9ywbd 130 20 are be VBP cord-264489-h1n9ywbd 130 21 usually usually RB cord-264489-h1n9ywbd 130 22 embedded embed VBN cord-264489-h1n9ywbd 130 23 within within IN cord-264489-h1n9ywbd 130 24 a a DT cord-264489-h1n9ywbd 130 25 protein protein NN cord-264489-h1n9ywbd 130 26 's 's POS cord-264489-h1n9ywbd 130 27 hydrophobic hydrophobic JJ cord-264489-h1n9ywbd 130 28 core core NN cord-264489-h1n9ywbd 130 29 . . . cord-264489-h1n9ywbd 131 1 Being be VBG cord-264489-h1n9ywbd 131 2 surrounded surround VBN cord-264489-h1n9ywbd 131 3 by by IN cord-264489-h1n9ywbd 131 4 various various JJ cord-264489-h1n9ywbd 131 5 hydrophobic hydrophobic JJ cord-264489-h1n9ywbd 131 6 and and CC cord-264489-h1n9ywbd 131 7 aromatic aromatic JJ cord-264489-h1n9ywbd 131 8 residues residue NNS cord-264489-h1n9ywbd 131 9 they -PRON- PRP cord-264489-h1n9ywbd 131 10 form form VBP cord-264489-h1n9ywbd 131 11 hydrophobic hydrophobic JJ cord-264489-h1n9ywbd 131 12 and and CC cord-264489-h1n9ywbd 131 13 other other JJ cord-264489-h1n9ywbd 131 14 nonbonded nonbonded JJ cord-264489-h1n9ywbd 131 15 interactions interaction NNS cord-264489-h1n9ywbd 131 16 and and CC cord-264489-h1n9ywbd 131 17 thus thus RB cord-264489-h1n9ywbd 131 18 make make VB cord-264489-h1n9ywbd 131 19 the the DT cord-264489-h1n9ywbd 131 20 protein protein NN cord-264489-h1n9ywbd 131 21 structure structure NN cord-264489-h1n9ywbd 131 22 more more RBR cord-264489-h1n9ywbd 131 23 compact compact JJ cord-264489-h1n9ywbd 131 24 and and CC cord-264489-h1n9ywbd 131 25 stable stable JJ cord-264489-h1n9ywbd 131 26 . . . cord-264489-h1n9ywbd 132 1 In in IN cord-264489-h1n9ywbd 132 2 3WO3/3WO4 3wo3/3wo4 CD cord-264489-h1n9ywbd 132 3 , , , cord-264489-h1n9ywbd 132 4 most most JJS cord-264489-h1n9ywbd 132 5 of of IN cord-264489-h1n9ywbd 132 6 the the DT cord-264489-h1n9ywbd 132 7 Cys Cys NNP cord-264489-h1n9ywbd 132 8 residues residue NNS cord-264489-h1n9ywbd 132 9 and and CC cord-264489-h1n9ywbd 132 10 disulfide disulfide NN cord-264489-h1n9ywbd 132 11 bridges bridge NNS cord-264489-h1n9ywbd 132 12 of of IN cord-264489-h1n9ywbd 132 13 IL-18 IL-18 NNP cord-264489-h1n9ywbd 132 14 and and CC cord-264489-h1n9ywbd 132 15 IL-18R il-18r XX cord-264489-h1n9ywbd 132 16 receptor receptor NN cord-264489-h1n9ywbd 132 17 chains chain NNS cord-264489-h1n9ywbd 132 18 are be VBP cord-264489-h1n9ywbd 132 19 buried bury VBN cord-264489-h1n9ywbd 132 20 , , , cord-264489-h1n9ywbd 132 21 and and CC cord-264489-h1n9ywbd 132 22 hence hence RB cord-264489-h1n9ywbd 132 23 , , , cord-264489-h1n9ywbd 132 24 are be VBP cord-264489-h1n9ywbd 132 25 subject subject JJ cord-264489-h1n9ywbd 132 26 to to IN cord-264489-h1n9ywbd 132 27 the the DT cord-264489-h1n9ywbd 132 28 aforesaid aforesaid JJ cord-264489-h1n9ywbd 132 29 stability stability NN cord-264489-h1n9ywbd 132 30 criterion criterion NN cord-264489-h1n9ywbd 132 31 . . . cord-264489-h1n9ywbd 133 1 In in IN cord-264489-h1n9ywbd 133 2 the the DT cord-264489-h1n9ywbd 133 3 3WO4 3wo4 CD cord-264489-h1n9ywbd 133 4 : : : cord-264489-h1n9ywbd 133 5 IL-18Rsubunit IL-18Rsubunit NNP cord-264489-h1n9ywbd 133 6 , , , cord-264489-h1n9ywbd 133 7 however however RB cord-264489-h1n9ywbd 133 8 , , , cord-264489-h1n9ywbd 133 9 the the DT cord-264489-h1n9ywbd 133 10 Cys Cys NNP cord-264489-h1n9ywbd 133 11 residues residue NNS cord-264489-h1n9ywbd 133 12 and and CC cord-264489-h1n9ywbd 133 13 some some DT cord-264489-h1n9ywbd 133 14 of of IN cord-264489-h1n9ywbd 133 15 the the DT cord-264489-h1n9ywbd 133 16 disulfide disulfide NN cord-264489-h1n9ywbd 133 17 bridges bridge NNS cord-264489-h1n9ywbd 133 18 are are VBG cord-264489-h1n9ywbd 133 19 mostly mostly RB cord-264489-h1n9ywbd 133 20 surfaceexposed surfaceexposed JJ cord-264489-h1n9ywbd 133 21 . . . cord-264489-h1n9ywbd 134 1 In in IN cord-264489-h1n9ywbd 134 2 our -PRON- PRP$ cord-264489-h1n9ywbd 134 3 previous previous JJ cord-264489-h1n9ywbd 134 4 paper paper NN cord-264489-h1n9ywbd 134 5 , , , cord-264489-h1n9ywbd 134 6 we -PRON- PRP cord-264489-h1n9ywbd 134 7 have have VBP cord-264489-h1n9ywbd 134 8 addressed address VBN cord-264489-h1n9ywbd 134 9 the the DT cord-264489-h1n9ywbd 134 10 Cys Cys NNP cord-264489-h1n9ywbd 134 11 residue residue NN cord-264489-h1n9ywbd 134 12 stability stability NN cord-264489-h1n9ywbd 134 13 resulting result VBG cord-264489-h1n9ywbd 134 14 from from IN cord-264489-h1n9ywbd 134 15 metal metal NN cord-264489-h1n9ywbd 134 16 binding binding NN cord-264489-h1n9ywbd 134 17 or or CC cord-264489-h1n9ywbd 134 18 structural structural JJ cord-264489-h1n9ywbd 134 19 effects effect NNS cord-264489-h1n9ywbd 134 20 ( ( -LRB- cord-264489-h1n9ywbd 134 21 Roy Roy NNP cord-264489-h1n9ywbd 134 22 and and CC cord-264489-h1n9ywbd 134 23 Luck Luck NNP cord-264489-h1n9ywbd 134 24 2011 2011 CD cord-264489-h1n9ywbd 134 25 ) ) -RRB- cord-264489-h1n9ywbd 134 26 . . . cord-264489-h1n9ywbd 135 1 Here here RB cord-264489-h1n9ywbd 135 2 , , , cord-264489-h1n9ywbd 135 3 our -PRON- PRP$ cord-264489-h1n9ywbd 135 4 goal goal NN cord-264489-h1n9ywbd 135 5 is be VBZ cord-264489-h1n9ywbd 135 6 to to TO cord-264489-h1n9ywbd 135 7 examine examine VB cord-264489-h1n9ywbd 135 8 how how WRB cord-264489-h1n9ywbd 135 9 disulfide disulfide JJ cord-264489-h1n9ywbd 135 10 connectivity connectivity NN cord-264489-h1n9ywbd 135 11 increases increase VBZ cord-264489-h1n9ywbd 135 12 the the DT cord-264489-h1n9ywbd 135 13 overall overall JJ cord-264489-h1n9ywbd 135 14 stability stability NN cord-264489-h1n9ywbd 135 15 in in IN cord-264489-h1n9ywbd 135 16 a a DT cord-264489-h1n9ywbd 135 17 protein protein NN cord-264489-h1n9ywbd 135 18 complex complex NN cord-264489-h1n9ywbd 135 19 . . . cord-264489-h1n9ywbd 136 1 Previous previous JJ cord-264489-h1n9ywbd 136 2 authors author NNS cord-264489-h1n9ywbd 136 3 explored explore VBD cord-264489-h1n9ywbd 136 4 the the DT cord-264489-h1n9ywbd 136 5 possibility possibility NN cord-264489-h1n9ywbd 136 6 of of IN cord-264489-h1n9ywbd 136 7 mutating mutate VBG cord-264489-h1n9ywbd 136 8 Cys Cys NNP cord-264489-h1n9ywbd 136 9 ( ( -LRB- cord-264489-h1n9ywbd 136 10 SH SH NNP cord-264489-h1n9ywbd 136 11 ) ) -RRB- cord-264489-h1n9ywbd 136 12 to to TO cord-264489-h1n9ywbd 136 13 increase increase VB cord-264489-h1n9ywbd 136 14 the the DT cord-264489-h1n9ywbd 136 15 overall overall JJ cord-264489-h1n9ywbd 136 16 stability stability NN cord-264489-h1n9ywbd 136 17 of of IN cord-264489-h1n9ywbd 136 18 a a DT cord-264489-h1n9ywbd 136 19 protein protein NN cord-264489-h1n9ywbd 136 20 ( ( -LRB- cord-264489-h1n9ywbd 136 21 Yamamoto Yamamoto NNP cord-264489-h1n9ywbd 136 22 et et NNP cord-264489-h1n9ywbd 136 23 al al NNP cord-264489-h1n9ywbd 136 24 . . . cord-264489-h1n9ywbd 136 25 2004 2004 CD cord-264489-h1n9ywbd 136 26 ) ) -RRB- cord-264489-h1n9ywbd 136 27 . . . cord-264489-h1n9ywbd 137 1 To to TO cord-264489-h1n9ywbd 137 2 check check VB cord-264489-h1n9ywbd 137 3 the the DT cord-264489-h1n9ywbd 137 4 overall overall JJ cord-264489-h1n9ywbd 137 5 efficacy efficacy NN cord-264489-h1n9ywbd 137 6 of of IN cord-264489-h1n9ywbd 137 7 the the DT cord-264489-h1n9ywbd 137 8 3D 3d JJ cord-264489-h1n9ywbd 137 9 models model NNS cord-264489-h1n9ywbd 137 10 , , , cord-264489-h1n9ywbd 137 11 the the DT cord-264489-h1n9ywbd 137 12 initial initial JJ cord-264489-h1n9ywbd 137 13 protein protein NN cord-264489-h1n9ywbd 137 14 structures structure NNS cord-264489-h1n9ywbd 137 15 were be VBD cord-264489-h1n9ywbd 137 16 assessed assess VBN cord-264489-h1n9ywbd 137 17 . . . cord-264489-h1n9ywbd 138 1 Ramachandran Ramachandran NNP cord-264489-h1n9ywbd 138 2 plots plot NNS cord-264489-h1n9ywbd 138 3 for for IN cord-264489-h1n9ywbd 138 4 the the DT cord-264489-h1n9ywbd 138 5 initial initial JJ cord-264489-h1n9ywbd 138 6 structures structure NNS cord-264489-h1n9ywbd 138 7 used use VBN cord-264489-h1n9ywbd 138 8 in in IN cord-264489-h1n9ywbd 138 9 MD MD NNP cord-264489-h1n9ywbd 138 10 simulation simulation NN cord-264489-h1n9ywbd 138 11 are be VBP cord-264489-h1n9ywbd 138 12 depicted depict VBN cord-264489-h1n9ywbd 138 13 in in IN cord-264489-h1n9ywbd 138 14 SD SD NNP cord-264489-h1n9ywbd 138 15 Fig Fig NNP cord-264489-h1n9ywbd 138 16 S3 S3 NNP cord-264489-h1n9ywbd 138 17 . . . cord-264489-h1n9ywbd 139 1 These these DT cord-264489-h1n9ywbd 139 2 plots plot NNS cord-264489-h1n9ywbd 139 3 illustrate illustrate VBP cord-264489-h1n9ywbd 139 4 the the DT cord-264489-h1n9ywbd 139 5 favored favor VBN cord-264489-h1n9ywbd 139 6 , , , cord-264489-h1n9ywbd 139 7 allowed allow VBN cord-264489-h1n9ywbd 139 8 and and CC cord-264489-h1n9ywbd 139 9 disfavored disfavor VBN cord-264489-h1n9ywbd 139 10 distributions distribution NNS cord-264489-h1n9ywbd 139 11 of of IN cord-264489-h1n9ywbd 139 12 phi phi NNP cord-264489-h1n9ywbd 139 13 ( ( -LRB- cord-264489-h1n9ywbd 139 14 φ)/psi φ)/psi NNP cord-264489-h1n9ywbd 139 15 ( ( -LRB- cord-264489-h1n9ywbd 139 16 ψ ψ LS cord-264489-h1n9ywbd 139 17 ) ) -RRB- cord-264489-h1n9ywbd 139 18 dihedral dihedral JJ cord-264489-h1n9ywbd 139 19 angles angle NNS cord-264489-h1n9ywbd 139 20 . . . cord-264489-h1n9ywbd 140 1 The the DT cord-264489-h1n9ywbd 140 2 structural structural JJ cord-264489-h1n9ywbd 140 3 evaluations evaluation NNS cord-264489-h1n9ywbd 140 4 of of IN cord-264489-h1n9ywbd 140 5 these these DT cord-264489-h1n9ywbd 140 6 figures figure NNS cord-264489-h1n9ywbd 140 7 ensure ensure VBP cord-264489-h1n9ywbd 140 8 that that IN cord-264489-h1n9ywbd 140 9 most most JJS cord-264489-h1n9ywbd 140 10 residues residue NNS cord-264489-h1n9ywbd 140 11 are be VBP cord-264489-h1n9ywbd 140 12 within within IN cord-264489-h1n9ywbd 140 13 the the DT cord-264489-h1n9ywbd 140 14 J J NNP cord-264489-h1n9ywbd 140 15 o o NN cord-264489-h1n9ywbd 140 16 u u NN cord-264489-h1n9ywbd 140 17 r r NN cord-264489-h1n9ywbd 140 18 n n NN cord-264489-h1n9ywbd 140 19 a a DT cord-264489-h1n9ywbd 140 20 l l NN cord-264489-h1n9ywbd 140 21 P p NN cord-264489-h1n9ywbd 140 22 r r NN cord-264489-h1n9ywbd 140 23 e e NN cord-264489-h1n9ywbd 140 24 -p -p NN cord-264489-h1n9ywbd 141 1 r r NNP cord-264489-h1n9ywbd 141 2 o o NN cord-264489-h1n9ywbd 141 3 o o NN cord-264489-h1n9ywbd 141 4 f f NN cord-264489-h1n9ywbd 141 5 favored favor VBD cord-264489-h1n9ywbd 141 6 and and CC cord-264489-h1n9ywbd 141 7 allowed allow VBD cord-264489-h1n9ywbd 141 8 region region NN cord-264489-h1n9ywbd 141 9 ( ( -LRB- cord-264489-h1n9ywbd 141 10 Lovell Lovell NNP cord-264489-h1n9ywbd 141 11 et et NNP cord-264489-h1n9ywbd 141 12 al al NNP cord-264489-h1n9ywbd 141 13 . . NNP cord-264489-h1n9ywbd 141 14 2003 2003 CD cord-264489-h1n9ywbd 141 15 ) ) -RRB- cord-264489-h1n9ywbd 141 16 . . . cord-264489-h1n9ywbd 142 1 Overall overall RB cord-264489-h1n9ywbd 142 2 , , , cord-264489-h1n9ywbd 142 3 these these DT cord-264489-h1n9ywbd 142 4 plots plot NNS cord-264489-h1n9ywbd 142 5 indicate indicate VBP cord-264489-h1n9ywbd 142 6 the the DT cord-264489-h1n9ywbd 142 7 effectiveness effectiveness NN cord-264489-h1n9ywbd 142 8 of of IN cord-264489-h1n9ywbd 142 9 the the DT cord-264489-h1n9ywbd 142 10 3D 3d JJ cord-264489-h1n9ywbd 142 11 structures structure NNS cord-264489-h1n9ywbd 142 12 ; ; : cord-264489-h1n9ywbd 142 13 further further JJ cord-264489-h1n9ywbd 142 14 details detail NNS cord-264489-h1n9ywbd 142 15 are be VBP cord-264489-h1n9ywbd 142 16 explained explain VBN cord-264489-h1n9ywbd 142 17 in in IN cord-264489-h1n9ywbd 142 18 the the DT cord-264489-h1n9ywbd 142 19 SD sd NN cord-264489-h1n9ywbd 142 20 . . . cord-264489-h1n9ywbd 143 1 greater great JJR cord-264489-h1n9ywbd 143 2 ( ( -LRB- cord-264489-h1n9ywbd 143 3 3.16Å 3.16å CD cord-264489-h1n9ywbd 143 4 ) ) -RRB- cord-264489-h1n9ywbd 144 1 than than IN cord-264489-h1n9ywbd 144 2 3WO2 3wo2 LS cord-264489-h1n9ywbd 144 3 ( ( -LRB- cord-264489-h1n9ywbd 144 4 2.47Å 2.47Å NNP cord-264489-h1n9ywbd 144 5 ) ) -RRB- cord-264489-h1n9ywbd 144 6 . . . cord-264489-h1n9ywbd 145 1 The the DT cord-264489-h1n9ywbd 145 2 first first JJ cord-264489-h1n9ywbd 145 3 0.6 0.6 CD cord-264489-h1n9ywbd 145 4 ns ns XX cord-264489-h1n9ywbd 145 5 of of IN cord-264489-h1n9ywbd 145 6 the the DT cord-264489-h1n9ywbd 145 7 simulation simulation NN cord-264489-h1n9ywbd 145 8 was be VBD cord-264489-h1n9ywbd 145 9 skipped skip VBN cord-264489-h1n9ywbd 145 10 for for IN cord-264489-h1n9ywbd 145 11 averaging average VBG cord-264489-h1n9ywbd 145 12 as as IN cord-264489-h1n9ywbd 145 13 initial initial JJ cord-264489-h1n9ywbd 145 14 sampling sampling NN cord-264489-h1n9ywbd 145 15 indicated indicate VBD cord-264489-h1n9ywbd 145 16 a a DT cord-264489-h1n9ywbd 145 17 steep steep JJ cord-264489-h1n9ywbd 145 18 rise rise NN cord-264489-h1n9ywbd 145 19 owing owe VBG cord-264489-h1n9ywbd 145 20 to to IN cord-264489-h1n9ywbd 145 21 the the DT cord-264489-h1n9ywbd 145 22 process process NN cord-264489-h1n9ywbd 145 23 of of IN cord-264489-h1n9ywbd 145 24 protein protein NN cord-264489-h1n9ywbd 145 25 - - HYPH cord-264489-h1n9ywbd 145 26 unfolding unfolding NN cord-264489-h1n9ywbd 145 27 . . . cord-264489-h1n9ywbd 146 1 These these DT cord-264489-h1n9ywbd 146 2 observations observation NNS cord-264489-h1n9ywbd 146 3 gathered gather VBD cord-264489-h1n9ywbd 146 4 from from IN cord-264489-h1n9ywbd 146 5 plot plot NN cord-264489-h1n9ywbd 146 6 6A 6a CD cord-264489-h1n9ywbd 146 7 lead lead VB cord-264489-h1n9ywbd 146 8 us -PRON- PRP cord-264489-h1n9ywbd 146 9 to to TO cord-264489-h1n9ywbd 146 10 conclude conclude VB cord-264489-h1n9ywbd 146 11 that that IN cord-264489-h1n9ywbd 146 12 , , , cord-264489-h1n9ywbd 146 13 apo apo NNP cord-264489-h1n9ywbd 146 14 ligand ligand NNP cord-264489-h1n9ywbd 146 15 3WO2 3wo2 CD cord-264489-h1n9ywbd 146 16 is be VBZ cord-264489-h1n9ywbd 146 17 more more RBR cord-264489-h1n9ywbd 146 18 stable stable JJ cord-264489-h1n9ywbd 146 19 than than IN cord-264489-h1n9ywbd 146 20 1J0S. 1j0s. CD cord-264489-h1n9ywbd 147 1 The the DT cord-264489-h1n9ywbd 147 2 undefined undefined JJ cord-264489-h1n9ywbd 147 3 loop loop NN cord-264489-h1n9ywbd 147 4 structure structure NN cord-264489-h1n9ywbd 147 5 and and CC cord-264489-h1n9ywbd 147 6 Cys Cys NNP cord-264489-h1n9ywbd 147 7 ( ( -LRB- cord-264489-h1n9ywbd 147 8 -SH -SH NNS cord-264489-h1n9ywbd 147 9 ) ) -RRB- cord-264489-h1n9ywbd 147 10 residues residue NNS cord-264489-h1n9ywbd 147 11 in in IN cord-264489-h1n9ywbd 147 12 1J0S 1j0s CD cord-264489-h1n9ywbd 147 13 make make VB cord-264489-h1n9ywbd 147 14 this this DT cord-264489-h1n9ywbd 147 15 structure structure NN cord-264489-h1n9ywbd 147 16 less less RBR cord-264489-h1n9ywbd 147 17 stable stable JJ cord-264489-h1n9ywbd 147 18 . . . cord-264489-h1n9ywbd 148 1 Four four CD cord-264489-h1n9ywbd 148 2 Cys Cys NNP cord-264489-h1n9ywbd 148 3 ( ( -LRB- cord-264489-h1n9ywbd 148 4 -SH -SH NNS cord-264489-h1n9ywbd 148 5 ) ) -RRB- cord-264489-h1n9ywbd 148 6 residues residue NNS cord-264489-h1n9ywbd 148 7 also also RB cord-264489-h1n9ywbd 148 8 exist exist VBP cord-264489-h1n9ywbd 148 9 in in IN cord-264489-h1n9ywbd 148 10 3WO2 3wo2 CD cord-264489-h1n9ywbd 148 11 , , , cord-264489-h1n9ywbd 148 12 where where WRB cord-264489-h1n9ywbd 148 13 the the DT cord-264489-h1n9ywbd 148 14 Cys76 Cys76 NNP cord-264489-h1n9ywbd 148 15 and and CC cord-264489-h1n9ywbd 148 16 Cys127 Cys127 NNP cord-264489-h1n9ywbd 148 17 species specie NNS cord-264489-h1n9ywbd 148 18 support support VBP cord-264489-h1n9ywbd 148 19 sulfur sulfur NN cord-264489-h1n9ywbd 148 20 - - HYPH cord-264489-h1n9ywbd 148 21 pi pi NN cord-264489-h1n9ywbd 148 22 interactions interaction NNS cord-264489-h1n9ywbd 148 23 with with IN cord-264489-h1n9ywbd 148 24 Tyr120 tyr120 ADD cord-264489-h1n9ywbd 148 25 and and CC cord-264489-h1n9ywbd 148 26 Phe134 phe134 CD cord-264489-h1n9ywbd 148 27 , , , cord-264489-h1n9ywbd 148 28 respectively respectively RB cord-264489-h1n9ywbd 148 29 . . . cord-264489-h1n9ywbd 149 1 These these DT cord-264489-h1n9ywbd 149 2 sulfur sulfur NN cord-264489-h1n9ywbd 149 3 - - HYPH cord-264489-h1n9ywbd 149 4 pi pi NN cord-264489-h1n9ywbd 149 5 interactions interaction NNS cord-264489-h1n9ywbd 149 6 are be VBP cord-264489-h1n9ywbd 149 7 absent absent JJ cord-264489-h1n9ywbd 149 8 in in IN cord-264489-h1n9ywbd 149 9 1J0S. 1j0s. CD cord-264489-h1n9ywbd 150 1 Though though IN cord-264489-h1n9ywbd 150 2 the the DT cord-264489-h1n9ywbd 150 3 Cys127-Phe134 Cys127-Phe134 NNP cord-264489-h1n9ywbd 150 4 pair pair NN cord-264489-h1n9ywbd 150 5 involves involve VBZ cord-264489-h1n9ywbd 150 6 pi pi NN cord-264489-h1n9ywbd 150 7 - - HYPH cord-264489-h1n9ywbd 150 8 alkyl alkyl JJ cord-264489-h1n9ywbd 150 9 interactions interaction NNS cord-264489-h1n9ywbd 150 10 in in IN cord-264489-h1n9ywbd 150 11 both both DT cord-264489-h1n9ywbd 150 12 cases case NNS cord-264489-h1n9ywbd 150 13 . . . cord-264489-h1n9ywbd 151 1 Although although IN cord-264489-h1n9ywbd 151 2 some some DT cord-264489-h1n9ywbd 151 3 minor minor JJ cord-264489-h1n9ywbd 151 4 variations variation NNS cord-264489-h1n9ywbd 151 5 are be VBP cord-264489-h1n9ywbd 151 6 observed observe VBN cord-264489-h1n9ywbd 151 7 in in IN cord-264489-h1n9ywbd 151 8 3WO2 3wo2 CD cord-264489-h1n9ywbd 151 9 loop loop NN cord-264489-h1n9ywbd 151 10 , , , cord-264489-h1n9ywbd 151 11 overall overall RB cord-264489-h1n9ywbd 151 12 it -PRON- PRP cord-264489-h1n9ywbd 151 13 maintains maintain VBZ cord-264489-h1n9ywbd 151 14 a a DT cord-264489-h1n9ywbd 151 15 stable stable JJ cord-264489-h1n9ywbd 151 16 nature nature NN cord-264489-h1n9ywbd 151 17 . . . cord-264489-h1n9ywbd 152 1 The the DT cord-264489-h1n9ywbd 152 2 partial partial JJ cord-264489-h1n9ywbd 152 3 conversion conversion NN cord-264489-h1n9ywbd 152 4 of of IN cord-264489-h1n9ywbd 152 5 turns turn NNS cord-264489-h1n9ywbd 152 6 into into IN cord-264489-h1n9ywbd 152 7 -helices -helices NNPS cord-264489-h1n9ywbd 152 8 in in IN cord-264489-h1n9ywbd 152 9 3WO2 3wo2 CD cord-264489-h1n9ywbd 152 10 strengthens strengthen VBZ cord-264489-h1n9ywbd 152 11 and and CC cord-264489-h1n9ywbd 152 12 stabilizes stabilize VBZ cord-264489-h1n9ywbd 152 13 this this DT cord-264489-h1n9ywbd 152 14 structure structure NN cord-264489-h1n9ywbd 152 15 . . . cord-264489-h1n9ywbd 153 1 The the DT cord-264489-h1n9ywbd 153 2 undefined undefined JJ cord-264489-h1n9ywbd 153 3 loop loop NN cord-264489-h1n9ywbd 153 4 region region NN cord-264489-h1n9ywbd 153 5 in in IN cord-264489-h1n9ywbd 153 6 1J0S 1j0s CD cord-264489-h1n9ywbd 153 7 is be VBZ cord-264489-h1n9ywbd 153 8 relatively relatively RB cord-264489-h1n9ywbd 153 9 less less RBR cord-264489-h1n9ywbd 153 10 stable stable JJ cord-264489-h1n9ywbd 153 11 . . . cord-264489-h1n9ywbd 154 1 For for IN cord-264489-h1n9ywbd 154 2 the the DT cord-264489-h1n9ywbd 154 3 ligand ligand NN cord-264489-h1n9ywbd 154 4 bound bind VBN cord-264489-h1n9ywbd 154 5 ternary ternary JJ cord-264489-h1n9ywbd 154 6 structure structure NN cord-264489-h1n9ywbd 154 7 3WO4 3wo4 CD cord-264489-h1n9ywbd 154 8 , , , cord-264489-h1n9ywbd 154 9 the the DT cord-264489-h1n9ywbd 154 10   NNP cord-264489-h1n9ywbd 154 11 receptor receptor NN cord-264489-h1n9ywbd 154 12 exhibit exhibit NN cord-264489-h1n9ywbd 154 13 strong strong JJ cord-264489-h1n9ywbd 154 14 RMSD RMSD NNP cord-264489-h1n9ywbd 154 15 variations variation NNS cord-264489-h1n9ywbd 154 16 compared compare VBN cord-264489-h1n9ywbd 154 17 to to IN cord-264489-h1n9ywbd 154 18 those those DT cord-264489-h1n9ywbd 154 19 of of IN cord-264489-h1n9ywbd 154 20 the the DT cord-264489-h1n9ywbd 154 21 ligand ligand NN cord-264489-h1n9ywbd 154 22 and and NN cord-264489-h1n9ywbd 154 23 receptor receptor NN cord-264489-h1n9ywbd 154 24 structures structure NNS cord-264489-h1n9ywbd 154 25 ( ( -LRB- cord-264489-h1n9ywbd 154 26 data datum NNS cord-264489-h1n9ywbd 154 27 not not RB cord-264489-h1n9ywbd 154 28 shown show VBN cord-264489-h1n9ywbd 154 29 ) ) -RRB- cord-264489-h1n9ywbd 154 30 . . . cord-264489-h1n9ywbd 155 1 The the DT cord-264489-h1n9ywbd 155 2 larger large JJR cord-264489-h1n9ywbd 155 3 interfacial interfacial JJ cord-264489-h1n9ywbd 155 4 regions region NNS cord-264489-h1n9ywbd 155 5 of of IN cord-264489-h1n9ywbd 155 6 the the DT cord-264489-h1n9ywbd 155 7   NNP cord-264489-h1n9ywbd 155 8 receptor receptor NN cord-264489-h1n9ywbd 155 9 ( ( -LRB- cord-264489-h1n9ywbd 155 10 both both DT cord-264489-h1n9ywbd 155 11 with with IN cord-264489-h1n9ywbd 155 12 ligand ligand NN cord-264489-h1n9ywbd 155 13 and and CC cord-264489-h1n9ywbd 155 14 the the DT cord-264489-h1n9ywbd 155 15   NNP cord-264489-h1n9ywbd 155 16 receptor receptor NN cord-264489-h1n9ywbd 155 17 ) ) -RRB- cord-264489-h1n9ywbd 155 18 most most RBS cord-264489-h1n9ywbd 155 19 likely likely RB cord-264489-h1n9ywbd 155 20 boost boost VB cord-264489-h1n9ywbd 155 21 the the DT cord-264489-h1n9ywbd 155 22 latter latter NN cord-264489-h1n9ywbd 155 23 's 's POS cord-264489-h1n9ywbd 155 24 stability stability NN cord-264489-h1n9ywbd 155 25 , , , cord-264489-h1n9ywbd 155 26 because because IN cord-264489-h1n9ywbd 155 27 the the DT cord-264489-h1n9ywbd 155 28 stronger strong JJR cord-264489-h1n9ywbd 155 29 inter inter JJ cord-264489-h1n9ywbd 155 30 - - JJ cord-264489-h1n9ywbd 155 31 subunit subunit JJ cord-264489-h1n9ywbd 155 32 interactions interaction NNS cord-264489-h1n9ywbd 155 33 operate operate VBP cord-264489-h1n9ywbd 155 34 in in IN cord-264489-h1n9ywbd 155 35 these these DT cord-264489-h1n9ywbd 155 36 regions region NNS cord-264489-h1n9ywbd 155 37 . . . cord-264489-h1n9ywbd 156 1 The the DT cord-264489-h1n9ywbd 156 2 existence existence NN cord-264489-h1n9ywbd 156 3 of of IN cord-264489-h1n9ywbd 156 4 three three CD cord-264489-h1n9ywbd 156 5 Cys Cys NNP cord-264489-h1n9ywbd 156 6 residues residue NNS cord-264489-h1n9ywbd 156 7 in in IN cord-264489-h1n9ywbd 156 8 the the DT cord-264489-h1n9ywbd 156 9   NNP cord-264489-h1n9ywbd 156 10 receptor receptor NN cord-264489-h1n9ywbd 156 11 could could MD cord-264489-h1n9ywbd 156 12 be be VB cord-264489-h1n9ywbd 156 13 attributed attribute VBN cord-264489-h1n9ywbd 156 14 to to IN cord-264489-h1n9ywbd 156 15 the the DT cord-264489-h1n9ywbd 156 16 latter latter JJ cord-264489-h1n9ywbd 156 17 's 's POS cord-264489-h1n9ywbd 156 18 unstable unstable JJ cord-264489-h1n9ywbd 156 19 nature nature NN cord-264489-h1n9ywbd 156 20 . . . cord-264489-h1n9ywbd 157 1 The the DT cord-264489-h1n9ywbd 157 2 presence presence NN cord-264489-h1n9ywbd 157 3 of of IN cord-264489-h1n9ywbd 157 4 surface surface NN cord-264489-h1n9ywbd 157 5 exposed expose VBN cord-264489-h1n9ywbd 157 6 Cys Cys NNP cord-264489-h1n9ywbd 157 7 in in IN cord-264489-h1n9ywbd 157 8 the the DT cord-264489-h1n9ywbd 157 9 IL-18R IL-18R NNP cord-264489-h1n9ywbd 157 10 receptor receptor NN cord-264489-h1n9ywbd 157 11 chain chain NN cord-264489-h1n9ywbd 157 12 may may MD cord-264489-h1n9ywbd 157 13 also also RB cord-264489-h1n9ywbd 157 14 be be VB cord-264489-h1n9ywbd 157 15 accountable accountable JJ cord-264489-h1n9ywbd 157 16 for for IN cord-264489-h1n9ywbd 157 17 the the DT cord-264489-h1n9ywbd 157 18 -chain -chain NNP cord-264489-h1n9ywbd 157 19 's 's POS cord-264489-h1n9ywbd 157 20 higher high JJR cord-264489-h1n9ywbd 157 21 instability instability NN cord-264489-h1n9ywbd 157 22 . . . cord-264489-h1n9ywbd 158 1 It -PRON- PRP cord-264489-h1n9ywbd 158 2 is be VBZ cord-264489-h1n9ywbd 158 3 possible possible JJ cord-264489-h1n9ywbd 158 4 that that IN cord-264489-h1n9ywbd 158 5 , , , cord-264489-h1n9ywbd 158 6 these these DT cord-264489-h1n9ywbd 158 7 fluctuations fluctuation NNS cord-264489-h1n9ywbd 158 8 in in IN cord-264489-h1n9ywbd 158 9 the the DT cord-264489-h1n9ywbd 158 10   NNP cord-264489-h1n9ywbd 158 11 J J NNP cord-264489-h1n9ywbd 158 12 o o NN cord-264489-h1n9ywbd 158 13 u u NN cord-264489-h1n9ywbd 158 14 r r NN cord-264489-h1n9ywbd 158 15 n n NN cord-264489-h1n9ywbd 158 16 a a DT cord-264489-h1n9ywbd 158 17 l l NN cord-264489-h1n9ywbd 158 18 P p NN cord-264489-h1n9ywbd 158 19 r r NN cord-264489-h1n9ywbd 158 20 e e NN cord-264489-h1n9ywbd 158 21 -p -p NN cord-264489-h1n9ywbd 158 22 r r NN cord-264489-h1n9ywbd 158 23 o o NN cord-264489-h1n9ywbd 158 24 o o NN cord-264489-h1n9ywbd 159 1 f f NNP cord-264489-h1n9ywbd 159 2 receptor receptor NN cord-264489-h1n9ywbd 159 3 ( ( -LRB- cord-264489-h1n9ywbd 159 4 Fig Fig NNP cord-264489-h1n9ywbd 159 5 . . . cord-264489-h1n9ywbd 159 6 6B 6b CD cord-264489-h1n9ywbd 159 7 ) ) -RRB- cord-264489-h1n9ywbd 160 1 cause cause VB cord-264489-h1n9ywbd 160 2 the the DT cord-264489-h1n9ywbd 160 3 overall overall JJ cord-264489-h1n9ywbd 160 4 instability instability NN cord-264489-h1n9ywbd 160 5 of of IN cord-264489-h1n9ywbd 160 6 the the DT cord-264489-h1n9ywbd 160 7 ligand ligand NN cord-264489-h1n9ywbd 160 8 bound bind VBN cord-264489-h1n9ywbd 160 9 receptor receptor NN cord-264489-h1n9ywbd 160 10 's 's POS cord-264489-h1n9ywbd 160 11 trimeric trimeric JJ cord-264489-h1n9ywbd 160 12 structure structure NN cord-264489-h1n9ywbd 160 13 ( ( -LRB- cord-264489-h1n9ywbd 160 14 Fig Fig NNP cord-264489-h1n9ywbd 160 15 . . . cord-264489-h1n9ywbd 160 16 6A 6a CD cord-264489-h1n9ywbd 160 17 ) ) -RRB- cord-264489-h1n9ywbd 160 18 . . . cord-264489-h1n9ywbd 161 1 SD SD NNP cord-264489-h1n9ywbd 161 2 Fig Fig NNP cord-264489-h1n9ywbd 161 3 . . . cord-264489-h1n9ywbd 162 1 S5 S5 NNP cord-264489-h1n9ywbd 162 2 shows show VBZ cord-264489-h1n9ywbd 162 3 the the DT cord-264489-h1n9ywbd 162 4 superposed superposed JJ cord-264489-h1n9ywbd 162 5 Cys Cys NNP cord-264489-h1n9ywbd 162 6 and and CC cord-264489-h1n9ywbd 162 7 the the DT cord-264489-h1n9ywbd 162 8 disulfides disulfide NNS cord-264489-h1n9ywbd 162 9 within within IN cord-264489-h1n9ywbd 162 10 the the DT cord-264489-h1n9ywbd 162 11 IL-18 IL-18 NNP cord-264489-h1n9ywbd 162 12 systems system NNS cord-264489-h1n9ywbd 162 13 . . . cord-264489-h1n9ywbd 163 1 A a DT cord-264489-h1n9ywbd 163 2 change change NN cord-264489-h1n9ywbd 163 3 from from IN cord-264489-h1n9ywbd 163 4 3 3 CD cord-264489-h1n9ywbd 163 5 - - SYM cord-264489-h1n9ywbd 163 6 10 10 CD cord-264489-h1n9ywbd 163 7 helices helix NNS cord-264489-h1n9ywbd 163 8 to to TO cord-264489-h1n9ywbd 163 9 turn turn VB cord-264489-h1n9ywbd 163 10 is be VBZ cord-264489-h1n9ywbd 163 11 observed observe VBN cord-264489-h1n9ywbd 163 12 around around IN cord-264489-h1n9ywbd 163 13 residues residue NNS cord-264489-h1n9ywbd 163 14 41 41 CD cord-264489-h1n9ywbd 163 15 - - SYM cord-264489-h1n9ywbd 163 16 44 44 CD cord-264489-h1n9ywbd 163 17 , , , cord-264489-h1n9ywbd 163 18 within within IN cord-264489-h1n9ywbd 163 19 the the DT cord-264489-h1n9ywbd 163 20 ligand ligand NN cord-264489-h1n9ywbd 163 21 bound bind VBN cord-264489-h1n9ywbd 163 22 form form NN cord-264489-h1n9ywbd 163 23 of of IN cord-264489-h1n9ywbd 163 24 the the DT cord-264489-h1n9ywbd 163 25 3WO3 3wo3 CD cord-264489-h1n9ywbd 163 26 ligand ligand NN cord-264489-h1n9ywbd 163 27 . . . cord-264489-h1n9ywbd 164 1 Like like IN cord-264489-h1n9ywbd 164 2 the the DT cord-264489-h1n9ywbd 164 3 case case NN cord-264489-h1n9ywbd 164 4 of of IN cord-264489-h1n9ywbd 164 5 3WO2 3wo2 CD cord-264489-h1n9ywbd 164 6 , , , cord-264489-h1n9ywbd 164 7 in in IN cord-264489-h1n9ywbd 164 8 the the DT cord-264489-h1n9ywbd 164 9 3WO3 3wo3 CD cord-264489-h1n9ywbd 164 10 ligand ligand NN cord-264489-h1n9ywbd 164 11 , , , cord-264489-h1n9ywbd 164 12 the the DT cord-264489-h1n9ywbd 164 13 residues residue NNS cord-264489-h1n9ywbd 164 14 around around IN cord-264489-h1n9ywbd 164 15 76 76 CD cord-264489-h1n9ywbd 164 16 - - SYM cord-264489-h1n9ywbd 164 17 81 81 CD cord-264489-h1n9ywbd 164 18 also also RB cord-264489-h1n9ywbd 164 19 persistently persistently RB cord-264489-h1n9ywbd 164 20 change change VBP cord-264489-h1n9ywbd 164 21 from from IN cord-264489-h1n9ywbd 164 22 3 3 CD cord-264489-h1n9ywbd 164 23 - - SYM cord-264489-h1n9ywbd 164 24 10 10 CD cord-264489-h1n9ywbd 164 25 helical helical JJ cord-264489-h1n9ywbd 164 26 structure structure NN cord-264489-h1n9ywbd 164 27 to to TO cord-264489-h1n9ywbd 164 28 turn turn VB cord-264489-h1n9ywbd 164 29 . . . cord-264489-h1n9ywbd 165 1 Aside aside RB cord-264489-h1n9ywbd 165 2 from from IN cord-264489-h1n9ywbd 165 3 this this DT cord-264489-h1n9ywbd 165 4 , , , cord-264489-h1n9ywbd 165 5 no no DT cord-264489-h1n9ywbd 165 6 other other JJ cord-264489-h1n9ywbd 165 7 major major JJ cord-264489-h1n9ywbd 165 8 changes change NNS cord-264489-h1n9ywbd 165 9 are be VBP cord-264489-h1n9ywbd 165 10 observed observe VBN cord-264489-h1n9ywbd 165 11 in in IN cord-264489-h1n9ywbd 165 12 this this DT cord-264489-h1n9ywbd 165 13 case case NN cord-264489-h1n9ywbd 165 14 , , , cord-264489-h1n9ywbd 165 15 and and CC cord-264489-h1n9ywbd 165 16 overall overall RB cord-264489-h1n9ywbd 165 17 the the DT cord-264489-h1n9ywbd 165 18 ligand ligand NN cord-264489-h1n9ywbd 165 19 in in IN cord-264489-h1n9ywbd 165 20 3WO3 3wo3 CD cord-264489-h1n9ywbd 165 21 seems seem VBZ cord-264489-h1n9ywbd 165 22 slightly slightly RB cord-264489-h1n9ywbd 165 23 more more RBR cord-264489-h1n9ywbd 165 24 stable stable JJ cord-264489-h1n9ywbd 165 25 than than IN cord-264489-h1n9ywbd 165 26 that that DT cord-264489-h1n9ywbd 165 27 of of IN cord-264489-h1n9ywbd 165 28 3WO2 3wo2 CD cord-264489-h1n9ywbd 165 29 . . . cord-264489-h1n9ywbd 166 1 The the DT cord-264489-h1n9ywbd 166 2 receptor receptor NN cord-264489-h1n9ywbd 166 3 residues residue VBZ cord-264489-h1n9ywbd 166 4 256 256 CD cord-264489-h1n9ywbd 166 5 - - HYPH cord-264489-h1n9ywbd 166 6 261 261 CD cord-264489-h1n9ywbd 166 7 and and CC cord-264489-h1n9ywbd 166 8 282 282 CD cord-264489-h1n9ywbd 166 9 - - SYM cord-264489-h1n9ywbd 166 10 295 295 CD cord-264489-h1n9ywbd 166 11 in in IN cord-264489-h1n9ywbd 166 12 the the DT cord-264489-h1n9ywbd 166 13 linker linker NN cord-264489-h1n9ywbd 166 14 - - HYPH cord-264489-h1n9ywbd 166 15 turn turn NN cord-264489-h1n9ywbd 166 16 region region NN cord-264489-h1n9ywbd 166 17 of of IN cord-264489-h1n9ywbd 166 18 3WO3 3wo3 CD cord-264489-h1n9ywbd 166 19 show show VBP cord-264489-h1n9ywbd 166 20 a a DT cord-264489-h1n9ywbd 166 21 few few JJ cord-264489-h1n9ywbd 166 22 changes change NNS cord-264489-h1n9ywbd 166 23 from from IN cord-264489-h1n9ywbd 166 24 turn turn NN cord-264489-h1n9ywbd 166 25 to to IN cord-264489-h1n9ywbd 166 26 coils coil NNS cord-264489-h1n9ywbd 166 27 and and CC cord-264489-h1n9ywbd 166 28 3 3 CD cord-264489-h1n9ywbd 166 29 - - SYM cord-264489-h1n9ywbd 166 30 10 10 CD cord-264489-h1n9ywbd 166 31 helices helix NNS cord-264489-h1n9ywbd 166 32 respectively respectively RB cord-264489-h1n9ywbd 166 33 . . . cord-264489-h1n9ywbd 167 1 Nevertheless nevertheless RB cord-264489-h1n9ywbd 167 2 , , , cord-264489-h1n9ywbd 167 3 within within IN cord-264489-h1n9ywbd 167 4 the the DT cord-264489-h1n9ywbd 167 5 receptor receptor NN cord-264489-h1n9ywbd 167 6 structure structure NN cord-264489-h1n9ywbd 167 7 , , , cord-264489-h1n9ywbd 167 8 the the DT cord-264489-h1n9ywbd 167 9 prominent prominent JJ cord-264489-h1n9ywbd 167 10 loop loop NN cord-264489-h1n9ywbd 167 11 region region NN cord-264489-h1n9ywbd 167 12 207 207 CD cord-264489-h1n9ywbd 167 13 - - SYM cord-264489-h1n9ywbd 167 14 215 215 CD cord-264489-h1n9ywbd 167 15 seems seem VBZ cord-264489-h1n9ywbd 167 16 rather rather RB cord-264489-h1n9ywbd 167 17 stable stable JJ cord-264489-h1n9ywbd 167 18 . . . cord-264489-h1n9ywbd 168 1 It -PRON- PRP cord-264489-h1n9ywbd 168 2 is be VBZ cord-264489-h1n9ywbd 168 3 likely likely JJ cord-264489-h1n9ywbd 168 4 that that IN cord-264489-h1n9ywbd 168 5 , , , cord-264489-h1n9ywbd 168 6 the the DT cord-264489-h1n9ywbd 168 7 protein protein NN cord-264489-h1n9ywbd 168 8 - - HYPH cord-264489-h1n9ywbd 168 9 protein protein NN cord-264489-h1n9ywbd 168 10 inter inter JJ cord-264489-h1n9ywbd 168 11 - - JJ cord-264489-h1n9ywbd 168 12 subunit subunit JJ cord-264489-h1n9ywbd 168 13 interactions interaction NNS cord-264489-h1n9ywbd 168 14 act act VBP cord-264489-h1n9ywbd 168 15 to to TO cord-264489-h1n9ywbd 168 16 stabilize stabilize VB cord-264489-h1n9ywbd 168 17 this this DT cord-264489-h1n9ywbd 168 18 loop loop NN cord-264489-h1n9ywbd 168 19 . . . cord-264489-h1n9ywbd 169 1 From from IN cord-264489-h1n9ywbd 169 2 the the DT cord-264489-h1n9ywbd 169 3 structure structure NN cord-264489-h1n9ywbd 169 4 of of IN cord-264489-h1n9ywbd 169 5 3WO3 3wo3 CD cord-264489-h1n9ywbd 169 6 it -PRON- PRP cord-264489-h1n9ywbd 169 7 is be VBZ cord-264489-h1n9ywbd 169 8 also also RB cord-264489-h1n9ywbd 169 9 clear clear JJ cord-264489-h1n9ywbd 169 10 that that IN cord-264489-h1n9ywbd 169 11 the the DT cord-264489-h1n9ywbd 169 12 IL-18 IL-18 NNP cord-264489-h1n9ywbd 169 13 fits fit VBZ cord-264489-h1n9ywbd 169 14 very very RB cord-264489-h1n9ywbd 169 15 well well RB cord-264489-h1n9ywbd 169 16 within within IN cord-264489-h1n9ywbd 169 17 the the DT cord-264489-h1n9ywbd 169 18 typical typical JJ cord-264489-h1n9ywbd 169 19 ligand ligand NN cord-264489-h1n9ywbd 169 20 binding bind VBG cord-264489-h1n9ywbd 169 21 pocket pocket NN cord-264489-h1n9ywbd 169 22 by by IN cord-264489-h1n9ywbd 169 23 surrounding surround VBG cord-264489-h1n9ywbd 169 24 receptor receptor NN cord-264489-h1n9ywbd 169 25 domains domain NNS cord-264489-h1n9ywbd 169 26 . . . cord-264489-h1n9ywbd 170 1 Certain certain JJ cord-264489-h1n9ywbd 170 2 accommodative accommodative JJ cord-264489-h1n9ywbd 170 3 arrangements arrangement NNS cord-264489-h1n9ywbd 170 4 taking take VBG cord-264489-h1n9ywbd 170 5 place place NN cord-264489-h1n9ywbd 170 6 between between IN cord-264489-h1n9ywbd 170 7 the the DT cord-264489-h1n9ywbd 170 8 ligand ligand NN cord-264489-h1n9ywbd 170 9 and and CC cord-264489-h1n9ywbd 170 10 the the DT cord-264489-h1n9ywbd 170 11 receptor receptor NN cord-264489-h1n9ywbd 170 12 's 's POS cord-264489-h1n9ywbd 170 13 three three CD cord-264489-h1n9ywbd 170 14 different different JJ cord-264489-h1n9ywbd 170 15 domains domain NNS cord-264489-h1n9ywbd 170 16 may may MD cord-264489-h1n9ywbd 170 17 make make VB cord-264489-h1n9ywbd 170 18 the the DT cord-264489-h1n9ywbd 170 19 corresponding correspond VBG cord-264489-h1n9ywbd 170 20 region region NN cord-264489-h1n9ywbd 170 21 further further RB cord-264489-h1n9ywbd 170 22 stable stable JJ cord-264489-h1n9ywbd 170 23 . . . cord-264489-h1n9ywbd 171 1 It -PRON- PRP cord-264489-h1n9ywbd 171 2 is be VBZ cord-264489-h1n9ywbd 171 3 also also RB cord-264489-h1n9ywbd 171 4 evident evident JJ cord-264489-h1n9ywbd 171 5 from from IN cord-264489-h1n9ywbd 171 6 Fig Fig NNP cord-264489-h1n9ywbd 171 7 . . . cord-264489-h1n9ywbd 172 1 8 8 CD cord-264489-h1n9ywbd 173 1 that that IN cord-264489-h1n9ywbd 173 2 , , , cord-264489-h1n9ywbd 173 3 the the DT cord-264489-h1n9ywbd 173 4 ligand ligand NN cord-264489-h1n9ywbd 173 5 is be VBZ cord-264489-h1n9ywbd 173 6 a a DT cord-264489-h1n9ywbd 173 7 bit bit NN cord-264489-h1n9ywbd 173 8 more more RBR cord-264489-h1n9ywbd 173 9 stable stable JJ cord-264489-h1n9ywbd 173 10 in in IN cord-264489-h1n9ywbd 173 11 the the DT cord-264489-h1n9ywbd 173 12 receptor receptor NN cord-264489-h1n9ywbd 173 13 bound bind VBN cord-264489-h1n9ywbd 173 14 form form NN cord-264489-h1n9ywbd 173 15 of of IN cord-264489-h1n9ywbd 173 16 3WO3 3wo3 CD cord-264489-h1n9ywbd 173 17 , , , cord-264489-h1n9ywbd 173 18 as as IN cord-264489-h1n9ywbd 173 19 compared compare VBN cord-264489-h1n9ywbd 173 20 to to IN cord-264489-h1n9ywbd 173 21 the the DT cord-264489-h1n9ywbd 173 22 corresponding corresponding JJ cord-264489-h1n9ywbd 173 23 case case NN cord-264489-h1n9ywbd 173 24 of of IN cord-264489-h1n9ywbd 173 25 the the DT cord-264489-h1n9ywbd 173 26 apo apo NNP cord-264489-h1n9ywbd 173 27 structure structure NN cord-264489-h1n9ywbd 173 28 3WO2 3wo2 CD cord-264489-h1n9ywbd 173 29 . . . cord-264489-h1n9ywbd 174 1 The the DT cord-264489-h1n9ywbd 174 2 secondary secondary JJ cord-264489-h1n9ywbd 174 3 structure structure NN cord-264489-h1n9ywbd 174 4 of of IN cord-264489-h1n9ywbd 174 5 3WO4 3wo4 CD cord-264489-h1n9ywbd 174 6 ligand ligand NN cord-264489-h1n9ywbd 174 7 has have VBZ cord-264489-h1n9ywbd 174 8 an an DT cord-264489-h1n9ywbd 174 9 approximately approximately RB cord-264489-h1n9ywbd 174 10 comparable comparable JJ cord-264489-h1n9ywbd 174 11 or or CC cord-264489-h1n9ywbd 174 12 marginally marginally RB cord-264489-h1n9ywbd 174 13 higher high JJR cord-264489-h1n9ywbd 174 14 stability stability NN cord-264489-h1n9ywbd 174 15 with with IN cord-264489-h1n9ywbd 174 16 respect respect NN cord-264489-h1n9ywbd 174 17 to to IN cord-264489-h1n9ywbd 174 18 that that DT cord-264489-h1n9ywbd 174 19 of of IN cord-264489-h1n9ywbd 174 20 the the DT cord-264489-h1n9ywbd 174 21 3WO3 3wo3 CD cord-264489-h1n9ywbd 174 22 ligand ligand NN cord-264489-h1n9ywbd 174 23 . . . cord-264489-h1n9ywbd 175 1 However however RB cord-264489-h1n9ywbd 175 2 , , , cord-264489-h1n9ywbd 175 3 the the DT cord-264489-h1n9ywbd 175 4 3WO4 3wo4 CD cord-264489-h1n9ywbd 175 5 ligand ligand NN cord-264489-h1n9ywbd 175 6 residues residue NNS cord-264489-h1n9ywbd 175 7 66 66 CD cord-264489-h1n9ywbd 175 8 - - SYM cord-264489-h1n9ywbd 175 9 71 71 CD cord-264489-h1n9ywbd 175 10 show show VBP cord-264489-h1n9ywbd 175 11 some some DT cord-264489-h1n9ywbd 175 12 additional additional JJ cord-264489-h1n9ywbd 175 13 variability variability NN cord-264489-h1n9ywbd 175 14 from from IN cord-264489-h1n9ywbd 175 15 -sheets -sheets CD cord-264489-h1n9ywbd 175 16 to to IN cord-264489-h1n9ywbd 175 17 turns turn NNS cord-264489-h1n9ywbd 175 18 . . . cord-264489-h1n9ywbd 176 1 Nevertheless nevertheless RB cord-264489-h1n9ywbd 176 2 , , , cord-264489-h1n9ywbd 176 3 the the DT cord-264489-h1n9ywbd 176 4 changes change NNS cord-264489-h1n9ywbd 176 5 that that WDT cord-264489-h1n9ywbd 176 6 are be VBP cord-264489-h1n9ywbd 176 7 observed observe VBN cord-264489-h1n9ywbd 176 8 around around IN cord-264489-h1n9ywbd 176 9 residue residue NN cord-264489-h1n9ywbd 176 10 56 56 CD cord-264489-h1n9ywbd 176 11 in in IN cord-264489-h1n9ywbd 176 12 3WO3 3wo3 CD cord-264489-h1n9ywbd 176 13 ligand ligand NN cord-264489-h1n9ywbd 176 14 are be VBP cord-264489-h1n9ywbd 176 15 absent absent JJ cord-264489-h1n9ywbd 176 16 here here RB cord-264489-h1n9ywbd 176 17 . . . cord-264489-h1n9ywbd 177 1 The the DT cord-264489-h1n9ywbd 177 2 secondary secondary JJ cord-264489-h1n9ywbd 177 3 structural structural JJ cord-264489-h1n9ywbd 177 4 changes change NNS cord-264489-h1n9ywbd 177 5 of of IN cord-264489-h1n9ywbd 177 6 the the DT cord-264489-h1n9ywbd 177 7 ligand ligand NN cord-264489-h1n9ywbd 177 8 within within IN cord-264489-h1n9ywbd 177 9 the the DT cord-264489-h1n9ywbd 177 10 ligand ligand NN cord-264489-h1n9ywbd 177 11 bound bind VBN cord-264489-h1n9ywbd 177 12 receptors receptor NNS cord-264489-h1n9ywbd 177 13 are be VBP cord-264489-h1n9ywbd 177 14 plotted plot VBN cord-264489-h1n9ywbd 177 15 in in IN cord-264489-h1n9ywbd 177 16 SD SD NNP cord-264489-h1n9ywbd 177 17 Fig Fig NNP cord-264489-h1n9ywbd 177 18 . . . cord-264489-h1n9ywbd 177 19 S8 S8 NNP cord-264489-h1n9ywbd 177 20 . . . cord-264489-h1n9ywbd 178 1 From from IN cord-264489-h1n9ywbd 178 2 Figs fig NNS cord-264489-h1n9ywbd 178 3 . . . cord-264489-h1n9ywbd 179 1 8 8 CD cord-264489-h1n9ywbd 179 2 and and CC cord-264489-h1n9ywbd 179 3 S8 S8 NNP cord-264489-h1n9ywbd 179 4 , , , cord-264489-h1n9ywbd 179 5 it -PRON- PRP cord-264489-h1n9ywbd 179 6 is be VBZ cord-264489-h1n9ywbd 179 7 evident evident JJ cord-264489-h1n9ywbd 179 8 that that IN cord-264489-h1n9ywbd 179 9 , , , cord-264489-h1n9ywbd 179 10 the the DT cord-264489-h1n9ywbd 179 11 ligand ligand NN cord-264489-h1n9ywbd 179 12 is be VBZ cord-264489-h1n9ywbd 179 13 more more RBR cord-264489-h1n9ywbd 179 14 stable stable JJ cord-264489-h1n9ywbd 179 15 within within IN cord-264489-h1n9ywbd 179 16 the the DT cord-264489-h1n9ywbd 179 17 receptor receptor NN cord-264489-h1n9ywbd 179 18 - - HYPH cord-264489-h1n9ywbd 179 19 bound bind VBN cord-264489-h1n9ywbd 179 20 forms form NNS cord-264489-h1n9ywbd 179 21 than than IN cord-264489-h1n9ywbd 179 22 in in IN cord-264489-h1n9ywbd 179 23 its -PRON- PRP$ cord-264489-h1n9ywbd 179 24 apo apo NNP cord-264489-h1n9ywbd 179 25 form form NN cord-264489-h1n9ywbd 179 26 , , , cord-264489-h1n9ywbd 179 27 and and CC cord-264489-h1n9ywbd 179 28 that that IN cord-264489-h1n9ywbd 179 29 correspondingly correspondingly RB cord-264489-h1n9ywbd 179 30 , , , cord-264489-h1n9ywbd 179 31 fewer few JJR cord-264489-h1n9ywbd 179 32 conformational conformational JJ cord-264489-h1n9ywbd 179 33 changes change NNS cord-264489-h1n9ywbd 179 34 occur occur VBP cord-264489-h1n9ywbd 179 35 within within IN cord-264489-h1n9ywbd 179 36 the the DT cord-264489-h1n9ywbd 179 37 ligand ligand NN cord-264489-h1n9ywbd 179 38 of of IN cord-264489-h1n9ywbd 179 39 3WO4 3wo4 CD cord-264489-h1n9ywbd 179 40 upon upon IN cord-264489-h1n9ywbd 179 41 receptor receptor NN cord-264489-h1n9ywbd 179 42 binding binding NN cord-264489-h1n9ywbd 179 43 . . . cord-264489-h1n9ywbd 180 1 The the DT cord-264489-h1n9ywbd 180 2 IL-18 IL-18 NNP cord-264489-h1n9ywbd 180 3 in in IN cord-264489-h1n9ywbd 180 4 3WO4 3wo4 CD cord-264489-h1n9ywbd 180 5 is be VBZ cord-264489-h1n9ywbd 180 6 somewhat somewhat RB cord-264489-h1n9ywbd 180 7 more more RBR cord-264489-h1n9ywbd 180 8 stable stable JJ cord-264489-h1n9ywbd 180 9 than than IN cord-264489-h1n9ywbd 180 10 3WO3 3wo3 CD cord-264489-h1n9ywbd 180 11 , , , cord-264489-h1n9ywbd 180 12 even even RB cord-264489-h1n9ywbd 180 13 though though IN cord-264489-h1n9ywbd 180 14 the the DT cord-264489-h1n9ywbd 180 15 overall overall JJ cord-264489-h1n9ywbd 180 16 stability stability NN cord-264489-h1n9ywbd 180 17 in in IN cord-264489-h1n9ywbd 180 18 3WO3 3wo3 CD cord-264489-h1n9ywbd 180 19 is be VBZ cord-264489-h1n9ywbd 180 20 higher high JJR cord-264489-h1n9ywbd 180 21 than than IN cord-264489-h1n9ywbd 180 22 that that DT cord-264489-h1n9ywbd 180 23 of of IN cord-264489-h1n9ywbd 180 24 3WO4 3wo4 CD cord-264489-h1n9ywbd 180 25 ; ; : cord-264489-h1n9ywbd 180 26 the the DT cord-264489-h1n9ywbd 180 27 relatively relatively RB cord-264489-h1n9ywbd 180 28 higher high JJR cord-264489-h1n9ywbd 180 29 interfacial interfacial JJ cord-264489-h1n9ywbd 180 30 intersubunit intersubunit JJ cord-264489-h1n9ywbd 180 31 interactions interaction NNS cord-264489-h1n9ywbd 180 32 present present JJ cord-264489-h1n9ywbd 180 33 in in IN cord-264489-h1n9ywbd 180 34 3WO4 3wo4 CD cord-264489-h1n9ywbd 180 35 ligand ligand NN cord-264489-h1n9ywbd 180 36 may may MD cord-264489-h1n9ywbd 180 37 be be VB cord-264489-h1n9ywbd 180 38 responsible responsible JJ cord-264489-h1n9ywbd 180 39 for for IN cord-264489-h1n9ywbd 180 40 this this DT cord-264489-h1n9ywbd 180 41 higher high JJR cord-264489-h1n9ywbd 180 42 stability stability NN cord-264489-h1n9ywbd 180 43 . . . cord-264489-h1n9ywbd 181 1 The the DT cord-264489-h1n9ywbd 181 2 maximum maximum JJ cord-264489-h1n9ywbd 181 3 changeability changeability NN cord-264489-h1n9ywbd 181 4 in in IN cord-264489-h1n9ywbd 181 5 the the DT cord-264489-h1n9ywbd 181 6 secondary secondary JJ cord-264489-h1n9ywbd 181 7 structure structure NN cord-264489-h1n9ywbd 181 8 is be VBZ cord-264489-h1n9ywbd 181 9 observable observable JJ cord-264489-h1n9ywbd 181 10 in in IN cord-264489-h1n9ywbd 181 11 the the DT cord-264489-h1n9ywbd 181 12 C C NNP cord-264489-h1n9ywbd 181 13 subunit subunit NN cord-264489-h1n9ywbd 181 14 Furthermore furthermore RB cord-264489-h1n9ywbd 181 15 , , , cord-264489-h1n9ywbd 181 16 along along IN cord-264489-h1n9ywbd 181 17 with with IN cord-264489-h1n9ywbd 181 18 several several JJ cord-264489-h1n9ywbd 181 19 other other JJ cord-264489-h1n9ywbd 181 20 cytokines cytokine NNS cord-264489-h1n9ywbd 181 21 , , , cord-264489-h1n9ywbd 181 22 IL-18 IL-18 NNP cord-264489-h1n9ywbd 181 23 can can MD cord-264489-h1n9ywbd 181 24 be be VB cord-264489-h1n9ywbd 181 25 used use VBN cord-264489-h1n9ywbd 181 26 as as IN cord-264489-h1n9ywbd 181 27 adjuvants adjuvant NNS cord-264489-h1n9ywbd 181 28 with with IN cord-264489-h1n9ywbd 181 29 HIV HIV NNP cord-264489-h1n9ywbd 181 30 and and CC cord-264489-h1n9ywbd 181 31 several several JJ cord-264489-h1n9ywbd 181 32 other other JJ cord-264489-h1n9ywbd 181 33 vaccines vaccine NNS cord-264489-h1n9ywbd 181 34 ( ( -LRB- cord-264489-h1n9ywbd 181 35 Bradney Bradney NNP cord-264489-h1n9ywbd 181 36 et et NNP cord-264489-h1n9ywbd 181 37 al al NNP cord-264489-h1n9ywbd 181 38 . . . cord-264489-h1n9ywbd 181 39 2002 2002 CD cord-264489-h1n9ywbd 181 40 ) ) -RRB- cord-264489-h1n9ywbd 181 41 . . . cord-264489-h1n9ywbd 182 1 In in IN cord-264489-h1n9ywbd 182 2 recent recent JJ cord-264489-h1n9ywbd 182 3 years year NNS cord-264489-h1n9ywbd 182 4 , , , cord-264489-h1n9ywbd 182 5 due due IN cord-264489-h1n9ywbd 182 6 to to IN cord-264489-h1n9ywbd 182 7 outbreak outbreak NN cord-264489-h1n9ywbd 182 8 of of IN cord-264489-h1n9ywbd 182 9 SARS SARS NNP cord-264489-h1n9ywbd 182 10 - - HYPH cord-264489-h1n9ywbd 182 11 CoV-2 CoV-2 NNP cord-264489-h1n9ywbd 182 12 pandemic pandemic NN cord-264489-h1n9ywbd 182 13 , , , cord-264489-h1n9ywbd 182 14 considerable considerable JJ cord-264489-h1n9ywbd 182 15 attentions attention NNS cord-264489-h1n9ywbd 182 16 have have VBP cord-264489-h1n9ywbd 182 17 been be VBN cord-264489-h1n9ywbd 182 18 directed direct VBN cord-264489-h1n9ywbd 182 19 towards towards IN cord-264489-h1n9ywbd 182 20 the the DT cord-264489-h1n9ywbd 182 21 immunity immunity NN cord-264489-h1n9ywbd 182 22 development development NN cord-264489-h1n9ywbd 182 23 against against IN cord-264489-h1n9ywbd 182 24 viral viral JJ cord-264489-h1n9ywbd 182 25 pathogens pathogen NNS cord-264489-h1n9ywbd 182 26 . . . cord-264489-h1n9ywbd 183 1 The the DT cord-264489-h1n9ywbd 183 2 present present JJ cord-264489-h1n9ywbd 183 3 paper paper NN cord-264489-h1n9ywbd 183 4 demonstrates demonstrate VBZ cord-264489-h1n9ywbd 183 5 that that IN cord-264489-h1n9ywbd 183 6 , , , cord-264489-h1n9ywbd 183 7 IL-18 IL-18 NNP cord-264489-h1n9ywbd 183 8 itself -PRON- PRP cord-264489-h1n9ywbd 183 9 is be VBZ cord-264489-h1n9ywbd 183 10 a a DT cord-264489-h1n9ywbd 183 11 structurally structurally RB cord-264489-h1n9ywbd 183 12 steady steady JJ cord-264489-h1n9ywbd 183 13 protein protein NN cord-264489-h1n9ywbd 183 14 and and CC cord-264489-h1n9ywbd 183 15 that that IN cord-264489-h1n9ywbd 183 16 it -PRON- PRP cord-264489-h1n9ywbd 183 17 can can MD cord-264489-h1n9ywbd 183 18 retain retain VB cord-264489-h1n9ywbd 183 19 this this DT cord-264489-h1n9ywbd 183 20 stability stability NN cord-264489-h1n9ywbd 183 21 over over IN cord-264489-h1n9ywbd 183 22 a a DT cord-264489-h1n9ywbd 183 23 relatively relatively RB cord-264489-h1n9ywbd 183 24 extended extended JJ cord-264489-h1n9ywbd 183 25 time time NN cord-264489-h1n9ywbd 183 26 - - HYPH cord-264489-h1n9ywbd 183 27 scale scale NN cord-264489-h1n9ywbd 183 28 . . . cord-264489-h1n9ywbd 184 1 This this DT cord-264489-h1n9ywbd 184 2 observation observation NN cord-264489-h1n9ywbd 184 3 points point VBZ cord-264489-h1n9ywbd 184 4 at at IN cord-264489-h1n9ywbd 184 5 the the DT cord-264489-h1n9ywbd 184 6 potential potential JJ cord-264489-h1n9ywbd 184 7 use use NN cord-264489-h1n9ywbd 184 8 of of IN cord-264489-h1n9ywbd 184 9 IL-18 IL-18 NNP cord-264489-h1n9ywbd 184 10 as as IN cord-264489-h1n9ywbd 184 11 an an DT cord-264489-h1n9ywbd 184 12 adjuvant adjuvant NN cord-264489-h1n9ywbd 184 13 for for IN cord-264489-h1n9ywbd 184 14 antibody antibody NN cord-264489-h1n9ywbd 184 15 generation generation NN cord-264489-h1n9ywbd 184 16 and and CC cord-264489-h1n9ywbd 184 17 immune immune JJ cord-264489-h1n9ywbd 184 18 enhancement enhancement NN cord-264489-h1n9ywbd 184 19 , , , cord-264489-h1n9ywbd 184 20 which which WDT cord-264489-h1n9ywbd 184 21 , , , cord-264489-h1n9ywbd 184 22 in in IN cord-264489-h1n9ywbd 184 23 turn turn NN cord-264489-h1n9ywbd 184 24 could could MD cord-264489-h1n9ywbd 184 25 facilitate facilitate VB cord-264489-h1n9ywbd 184 26 future future JJ cord-264489-h1n9ywbd 184 27 strategies strategy NNS cord-264489-h1n9ywbd 184 28 to to TO cord-264489-h1n9ywbd 184 29 develop develop VB cord-264489-h1n9ywbd 184 30 novel novel JJ cord-264489-h1n9ywbd 184 31 treatments treatment NNS cord-264489-h1n9ywbd 184 32 for for IN cord-264489-h1n9ywbd 184 33 communicable communicable JJ cord-264489-h1n9ywbd 184 34 viral viral JJ cord-264489-h1n9ywbd 184 35 diseases disease NNS cord-264489-h1n9ywbd 184 36 . . . cord-264489-h1n9ywbd 185 1 The the DT cord-264489-h1n9ywbd 185 2 computational computational JJ cord-264489-h1n9ywbd 185 3 results result NNS cord-264489-h1n9ywbd 185 4 presented present VBN cord-264489-h1n9ywbd 185 5 in in IN cord-264489-h1n9ywbd 185 6 this this DT cord-264489-h1n9ywbd 185 7 work work NN cord-264489-h1n9ywbd 185 8 describe describe VB cord-264489-h1n9ywbd 185 9 a a DT cord-264489-h1n9ywbd 185 10 set set NN cord-264489-h1n9ywbd 185 11 of of IN cord-264489-h1n9ywbd 185 12 residue residue NN cord-264489-h1n9ywbd 185 13 - - HYPH cord-264489-h1n9ywbd 185 14 level level NN cord-264489-h1n9ywbd 185 15 analyses analysis NNS cord-264489-h1n9ywbd 185 16 of of IN cord-264489-h1n9ywbd 185 17 the the DT cord-264489-h1n9ywbd 185 18 IL-18 IL-18 NNP cord-264489-h1n9ywbd 185 19 systems system NNS cord-264489-h1n9ywbd 185 20 based base VBN cord-264489-h1n9ywbd 185 21 on on IN cord-264489-h1n9ywbd 185 22 their -PRON- PRP$ cord-264489-h1n9ywbd 185 23 published publish VBN cord-264489-h1n9ywbd 185 24 structures structure NNS cord-264489-h1n9ywbd 185 25 . . . cord-264489-h1n9ywbd 186 1 This this DT cord-264489-h1n9ywbd 186 2 investigation investigation NN cord-264489-h1n9ywbd 186 3 also also RB cord-264489-h1n9ywbd 186 4 explores explore VBZ cord-264489-h1n9ywbd 186 5 the the DT cord-264489-h1n9ywbd 186 6 PPIs ppi NNS cord-264489-h1n9ywbd 186 7 between between IN cord-264489-h1n9ywbd 186 8 the the DT cord-264489-h1n9ywbd 186 9 IL-18 IL-18 NNP cord-264489-h1n9ywbd 186 10 / / SYM cord-264489-h1n9ywbd 186 11 IL-18R IL-18R NNP cord-264489-h1n9ywbd 186 12 and and CC cord-264489-h1n9ywbd 186 13 the the DT cord-264489-h1n9ywbd 186 14 IL-18 IL-18 NNP cord-264489-h1n9ywbd 186 15 / / SYM cord-264489-h1n9ywbd 186 16 IL-18BP IL-18BP NNP cord-264489-h1n9ywbd 186 17 systems system NNS cord-264489-h1n9ywbd 186 18 , , , cord-264489-h1n9ywbd 186 19 and and CC cord-264489-h1n9ywbd 186 20 notes note VBZ cord-264489-h1n9ywbd 186 21 the the DT cord-264489-h1n9ywbd 186 22 relevance relevance NN cord-264489-h1n9ywbd 186 23 of of IN cord-264489-h1n9ywbd 186 24 the the DT cord-264489-h1n9ywbd 186 25 findings finding NNS cord-264489-h1n9ywbd 186 26 . . . cord-264489-h1n9ywbd 187 1 The the DT cord-264489-h1n9ywbd 187 2 time time NN cord-264489-h1n9ywbd 187 3 - - HYPH cord-264489-h1n9ywbd 187 4 based base VBN cord-264489-h1n9ywbd 187 5 structural structural JJ cord-264489-h1n9ywbd 187 6 stabilities stability NNS cord-264489-h1n9ywbd 187 7 of of IN cord-264489-h1n9ywbd 187 8 IL-18 IL-18 NNP cord-264489-h1n9ywbd 187 9 , , , cord-264489-h1n9ywbd 187 10 in in IN cord-264489-h1n9ywbd 187 11 both both CC cord-264489-h1n9ywbd 187 12 its -PRON- PRP$ cord-264489-h1n9ywbd 187 13 apo apo NNP cord-264489-h1n9ywbd 187 14 and and CC cord-264489-h1n9ywbd 187 15 ligand ligand NNP cord-264489-h1n9ywbd 187 16 bound bind VBN cord-264489-h1n9ywbd 187 17 holo holo JJ cord-264489-h1n9ywbd 187 18 forms form NNS cord-264489-h1n9ywbd 187 19 have have VBP cord-264489-h1n9ywbd 187 20 been be VBN cord-264489-h1n9ywbd 187 21 measured measure VBN cord-264489-h1n9ywbd 187 22 using use VBG cord-264489-h1n9ywbd 187 23 MD MD NNP cord-264489-h1n9ywbd 187 24 simulation simulation NN cord-264489-h1n9ywbd 187 25 . . . cord-264489-h1n9ywbd 188 1 The the DT cord-264489-h1n9ywbd 188 2 results result NNS cord-264489-h1n9ywbd 188 3 show show VBP cord-264489-h1n9ywbd 188 4 that that IN cord-264489-h1n9ywbd 188 5 , , , cord-264489-h1n9ywbd 188 6 the the DT cord-264489-h1n9ywbd 188 7 ligand ligand NN cord-264489-h1n9ywbd 188 8 is be VBZ cord-264489-h1n9ywbd 188 9 somewhat somewhat RB cord-264489-h1n9ywbd 188 10 more more RBR cord-264489-h1n9ywbd 188 11 stable stable JJ cord-264489-h1n9ywbd 188 12 in in IN cord-264489-h1n9ywbd 188 13 its -PRON- PRP$ cord-264489-h1n9ywbd 188 14 receptor receptor NN cord-264489-h1n9ywbd 188 15 bound bind VBN cord-264489-h1n9ywbd 188 16 structures structure NNS cord-264489-h1n9ywbd 188 17 . . . cord-264489-h1n9ywbd 189 1 The the DT cord-264489-h1n9ywbd 189 2 ligand ligand NN cord-264489-h1n9ywbd 189 3 bound bind VBD cord-264489-h1n9ywbd 189 4 receptor receptor NN cord-264489-h1n9ywbd 189 5 monomer monomer NN cord-264489-h1n9ywbd 189 6 3WO3 3wo3 CD cord-264489-h1n9ywbd 189 7 has have VBZ cord-264489-h1n9ywbd 189 8 been be VBN cord-264489-h1n9ywbd 189 9 found find VBN cord-264489-h1n9ywbd 189 10 to to TO cord-264489-h1n9ywbd 189 11 be be VB cord-264489-h1n9ywbd 189 12 somewhat somewhat RB cord-264489-h1n9ywbd 189 13 more more RBR cord-264489-h1n9ywbd 189 14 stable stable JJ cord-264489-h1n9ywbd 189 15 than than IN cord-264489-h1n9ywbd 189 16 the the DT cord-264489-h1n9ywbd 189 17 ligand ligand NN cord-264489-h1n9ywbd 189 18 bound bind VBN cord-264489-h1n9ywbd 189 19 receptor receptor NN cord-264489-h1n9ywbd 189 20 dimer dimer NN cord-264489-h1n9ywbd 189 21 3WO4 3wo4 CD cord-264489-h1n9ywbd 189 22 . . . cord-264489-h1n9ywbd 190 1 The the DT cord-264489-h1n9ywbd 190 2 immunological immunological JJ cord-264489-h1n9ywbd 190 3 significance significance NN cord-264489-h1n9ywbd 190 4 of of IN cord-264489-h1n9ywbd 190 5 IL-18 IL-18 NNP cord-264489-h1n9ywbd 190 6 signaling signal VBG cord-264489-h1n9ywbd 190 7 is be VBZ cord-264489-h1n9ywbd 190 8 rooted root VBN cord-264489-h1n9ywbd 190 9 in in IN cord-264489-h1n9ywbd 190 10 the the DT cord-264489-h1n9ywbd 190 11 fact fact NN cord-264489-h1n9ywbd 190 12 that that IN cord-264489-h1n9ywbd 190 13 , , , cord-264489-h1n9ywbd 190 14 IL-18 IL-18 NNP cord-264489-h1n9ywbd 190 15 is be VBZ cord-264489-h1n9ywbd 190 16 related relate VBN cord-264489-h1n9ywbd 190 17 to to IN cord-264489-h1n9ywbd 190 18 numerous numerous JJ cord-264489-h1n9ywbd 190 19 autoimmune autoimmune JJ cord-264489-h1n9ywbd 190 20 and and CC cord-264489-h1n9ywbd 190 21 inflammatory inflammatory JJ cord-264489-h1n9ywbd 190 22 diseases disease NNS cord-264489-h1n9ywbd 190 23 , , , cord-264489-h1n9ywbd 190 24 and and CC cord-264489-h1n9ywbd 190 25 that that IN cord-264489-h1n9ywbd 190 26 the the DT cord-264489-h1n9ywbd 190 27 interruption interruption NN cord-264489-h1n9ywbd 190 28 of of IN cord-264489-h1n9ywbd 190 29 IL-18 IL-18 NNP cord-264489-h1n9ywbd 190 30 / / SYM cord-264489-h1n9ywbd 190 31 IL-18R IL-18R NNP cord-264489-h1n9ywbd 190 32 signaling signal VBG cord-264489-h1n9ywbd 190 33 cascades cascade NNS cord-264489-h1n9ywbd 190 34 impact impact VBP cord-264489-h1n9ywbd 190 35 the the DT cord-264489-h1n9ywbd 190 36 development development NN cord-264489-h1n9ywbd 190 37 of of IN cord-264489-h1n9ywbd 190 38 anti anti JJ cord-264489-h1n9ywbd 190 39 - - JJ cord-264489-h1n9ywbd 190 40 inflammatory inflammatory JJ cord-264489-h1n9ywbd 190 41 drugs drug NNS cord-264489-h1n9ywbd 190 42 / / SYM cord-264489-h1n9ywbd 190 43 drug drug NN cord-264489-h1n9ywbd 190 44 - - HYPH cord-264489-h1n9ywbd 190 45 targets target NNS cord-264489-h1n9ywbd 190 46 . . . cord-264489-h1n9ywbd 191 1 Additionally additionally RB cord-264489-h1n9ywbd 191 2 , , , cord-264489-h1n9ywbd 191 3 IL-18 IL-18 NNP cord-264489-h1n9ywbd 191 4 upregulates upregulate VBZ cord-264489-h1n9ywbd 191 5 Fas Fas NNP cord-264489-h1n9ywbd 191 6 ligand ligand NN cord-264489-h1n9ywbd 191 7 and and CC cord-264489-h1n9ywbd 191 8 interferon interferon NN cord-264489-h1n9ywbd 191 9 gamma gamma NN cord-264489-h1n9ywbd 191 10 ( ( -LRB- cord-264489-h1n9ywbd 191 11 IFN- IFN- NNP cord-264489-h1n9ywbd 191 12 ) ) -RRB- cord-264489-h1n9ywbd 191 13 leading lead VBG cord-264489-h1n9ywbd 191 14 to to IN cord-264489-h1n9ywbd 191 15 the the DT cord-264489-h1n9ywbd 191 16 process process NN cord-264489-h1n9ywbd 192 1 J J NNP cord-264489-h1n9ywbd 192 2 o o NN cord-264489-h1n9ywbd 192 3 u u NN cord-264489-h1n9ywbd 192 4 r r NN cord-264489-h1n9ywbd 192 5 n n NN cord-264489-h1n9ywbd 192 6 a a DT cord-264489-h1n9ywbd 192 7 l l NN cord-264489-h1n9ywbd 192 8 P p NN cord-264489-h1n9ywbd 192 9 r r NN cord-264489-h1n9ywbd 192 10 e e NN cord-264489-h1n9ywbd 192 11 -p -p NN cord-264489-h1n9ywbd 193 1 r r NNP cord-264489-h1n9ywbd 193 2 o o NN cord-264489-h1n9ywbd 193 3 o o NN cord-264489-h1n9ywbd 193 4 f f NN cord-264489-h1n9ywbd 193 5 of of IN cord-264489-h1n9ywbd 193 6 apoptosis apoptosis NN cord-264489-h1n9ywbd 193 7 or or CC cord-264489-h1n9ywbd 193 8 cell cell NN cord-264489-h1n9ywbd 193 9 death death NN cord-264489-h1n9ywbd 193 10 . . . cord-264489-h1n9ywbd 194 1 IL-18 IL-18 NNP cord-264489-h1n9ywbd 194 2 biologics biologic NNS cord-264489-h1n9ywbd 194 3 may may MD cord-264489-h1n9ywbd 194 4 be be VB cord-264489-h1n9ywbd 194 5 relevant relevant JJ cord-264489-h1n9ywbd 194 6 also also RB cord-264489-h1n9ywbd 194 7 in in IN cord-264489-h1n9ywbd 194 8 the the DT cord-264489-h1n9ywbd 194 9 contexts contexts NN cord-264489-h1n9ywbd 194 10 of of IN cord-264489-h1n9ywbd 194 11 immunity immunity NN cord-264489-h1n9ywbd 194 12 enhancement enhancement NN cord-264489-h1n9ywbd 194 13 approaches approach NNS cord-264489-h1n9ywbd 194 14 . . . cord-264489-h1n9ywbd 195 1 Thus thus RB cord-264489-h1n9ywbd 195 2 the the DT cord-264489-h1n9ywbd 195 3 detailed detailed JJ cord-264489-h1n9ywbd 195 4 identification identification NN cord-264489-h1n9ywbd 195 5 of of IN cord-264489-h1n9ywbd 195 6 the the DT cord-264489-h1n9ywbd 195 7 ligand ligand NN cord-264489-h1n9ywbd 195 8 / / SYM cord-264489-h1n9ywbd 195 9 receptor receptor NN cord-264489-h1n9ywbd 195 10 interfaces interface NNS cord-264489-h1n9ywbd 195 11 of of IN cord-264489-h1n9ywbd 195 12 this this DT cord-264489-h1n9ywbd 195 13 protein protein NN cord-264489-h1n9ywbd 195 14 , , , cord-264489-h1n9ywbd 195 15 and and CC cord-264489-h1n9ywbd 195 16 subsequent subsequent JJ cord-264489-h1n9ywbd 195 17 identification identification NN cord-264489-h1n9ywbd 195 18 of of IN cord-264489-h1n9ywbd 195 19 targeted target VBN cord-264489-h1n9ywbd 195 20 - - HYPH cord-264489-h1n9ywbd 195 21 therapy therapy NN cord-264489-h1n9ywbd 195 22 based base VBN cord-264489-h1n9ywbd 195 23 on on IN cord-264489-h1n9ywbd 195 24 computer computer NN cord-264489-h1n9ywbd 195 25 modeling modeling NN cord-264489-h1n9ywbd 195 26 efforts effort NNS cord-264489-h1n9ywbd 195 27 , , , cord-264489-h1n9ywbd 195 28 as as IN cord-264489-h1n9ywbd 195 29 those those DT cord-264489-h1n9ywbd 195 30 discussed discuss VBN cord-264489-h1n9ywbd 195 31 in in IN cord-264489-h1n9ywbd 195 32 this this DT cord-264489-h1n9ywbd 195 33 paper paper NN cord-264489-h1n9ywbd 195 34 , , , cord-264489-h1n9ywbd 195 35 could could MD cord-264489-h1n9ywbd 195 36 be be VB cord-264489-h1n9ywbd 195 37 helpful helpful JJ cord-264489-h1n9ywbd 195 38 in in IN cord-264489-h1n9ywbd 195 39 the the DT cord-264489-h1n9ywbd 195 40 development development NN cord-264489-h1n9ywbd 195 41 of of IN cord-264489-h1n9ywbd 195 42 predictive predictive JJ cord-264489-h1n9ywbd 195 43 immunotherapy immunotherapy NN cord-264489-h1n9ywbd 195 44 and and CC cord-264489-h1n9ywbd 195 45 precision precision NNP cord-264489-h1n9ywbd 195 46 bio bio NN cord-264489-h1n9ywbd 195 47 - - HYPH cord-264489-h1n9ywbd 195 48 therapeutics therapeutic NNS cord-264489-h1n9ywbd 195 49 . . . cord-264489-h1n9ywbd 196 1 The the DT cord-264489-h1n9ywbd 196 2 author author NN cord-264489-h1n9ywbd 196 3 has have VBZ cord-264489-h1n9ywbd 196 4 attached attach VBN cord-264489-h1n9ywbd 196 5 all all DT cord-264489-h1n9ywbd 196 6 high high JJ cord-264489-h1n9ywbd 196 7 resolution resolution NN cord-264489-h1n9ywbd 196 8 figures figure NNS cord-264489-h1n9ywbd 196 9 ( ( -LRB- cord-264489-h1n9ywbd 196 10 Figs fig NNS cord-264489-h1n9ywbd 196 11 1 1 CD cord-264489-h1n9ywbd 196 12 to to IN cord-264489-h1n9ywbd 196 13 9 9 CD cord-264489-h1n9ywbd 196 14 and and CC cord-264489-h1n9ywbd 196 15 graphical graphical JJ cord-264489-h1n9ywbd 196 16 abstract abstract NN cord-264489-h1n9ywbd 196 17 ) ) -RRB- cord-264489-h1n9ywbd 196 18 as as IN cord-264489-h1n9ywbd 196 19 Zip zip NN cord-264489-h1n9ywbd 196 20 files file NNS cord-264489-h1n9ywbd 196 21 . . . cord-264489-h1n9ywbd 197 1 This this DT cord-264489-h1n9ywbd 197 2 research research NN cord-264489-h1n9ywbd 197 3 did do VBD cord-264489-h1n9ywbd 197 4 not not RB cord-264489-h1n9ywbd 197 5 receive receive VB cord-264489-h1n9ywbd 197 6 any any DT cord-264489-h1n9ywbd 197 7 specific specific JJ cord-264489-h1n9ywbd 197 8 grant grant NN cord-264489-h1n9ywbd 197 9 from from IN cord-264489-h1n9ywbd 197 10 funding fund VBG cord-264489-h1n9ywbd 197 11 agencies agency NNS cord-264489-h1n9ywbd 197 12 in in IN cord-264489-h1n9ywbd 197 13 the the DT cord-264489-h1n9ywbd 197 14 public public NN cord-264489-h1n9ywbd 197 15 , , , cord-264489-h1n9ywbd 197 16 commercial commercial JJ cord-264489-h1n9ywbd 197 17 , , , cord-264489-h1n9ywbd 197 18 or or CC cord-264489-h1n9ywbd 197 19 not not RB cord-264489-h1n9ywbd 197 20 - - HYPH cord-264489-h1n9ywbd 197 21 for for IN cord-264489-h1n9ywbd 197 22 - - HYPH cord-264489-h1n9ywbd 197 23 profit profit NN cord-264489-h1n9ywbd 197 24 sectors sector NNS cord-264489-h1n9ywbd 197 25 . . . cord-264489-h1n9ywbd 198 1 The the DT cord-264489-h1n9ywbd 198 2 author author NN cord-264489-h1n9ywbd 198 3 declares declare VBZ cord-264489-h1n9ywbd 198 4 no no DT cord-264489-h1n9ywbd 198 5 conflict conflict NN cord-264489-h1n9ywbd 198 6 of of IN cord-264489-h1n9ywbd 198 7 interest interest NN cord-264489-h1n9ywbd 198 8 . . . cord-264489-h1n9ywbd 199 1 ( ( -LRB- cord-264489-h1n9ywbd 199 2 residues residue NNS cord-264489-h1n9ywbd 199 3 35 35 CD cord-264489-h1n9ywbd 199 4 - - SYM cord-264489-h1n9ywbd 199 5 40 40 CD cord-264489-h1n9ywbd 199 6 ) ) -RRB- cord-264489-h1n9ywbd 199 7 that that WDT cord-264489-h1n9ywbd 199 8 turned turn VBD cord-264489-h1n9ywbd 199 9 into into IN cord-264489-h1n9ywbd 199 10 a a DT cord-264489-h1n9ywbd 199 11 helical helical JJ cord-264489-h1n9ywbd 199 12 structure structure NN cord-264489-h1n9ywbd 199 13 has have VBZ cord-264489-h1n9ywbd 199 14 been be VBN cord-264489-h1n9ywbd 199 15 shown show VBN cord-264489-h1n9ywbd 199 16 in in IN cord-264489-h1n9ywbd 199 17 a a DT cord-264489-h1n9ywbd 199 18 different different JJ cord-264489-h1n9ywbd 199 19 color color NN cord-264489-h1n9ywbd 199 20 , , , cord-264489-h1n9ywbd 199 21 grey grey NNP cord-264489-h1n9ywbd 199 22 . . . cord-264489-h1n9ywbd 200 1 E. E. NNP cord-264489-h1n9ywbd 200 2 highlight highlight VBP cord-264489-h1n9ywbd 200 3 the the DT cord-264489-h1n9ywbd 200 4 main main JJ cord-264489-h1n9ywbd 200 5 interacting interact VBG cord-264489-h1n9ywbd 200 6 residues residue NNS cord-264489-h1n9ywbd 200 7 , , , cord-264489-h1n9ywbd 200 8 the the DT cord-264489-h1n9ywbd 200 9 secondary secondary JJ cord-264489-h1n9ywbd 200 10 structures structure NNS cord-264489-h1n9ywbd 200 11 in in IN cord-264489-h1n9ywbd 200 12 Fig Fig NNP cord-264489-h1n9ywbd 200 13 . . . cord-264489-h1n9ywbd 201 1 4 4 CD cord-264489-h1n9ywbd 201 2 have have VBP cord-264489-h1n9ywbd 201 3 been be VBN cord-264489-h1n9ywbd 201 4 are be VBP cord-264489-h1n9ywbd 201 5 presented present VBN cord-264489-h1n9ywbd 201 6 in in IN cord-264489-h1n9ywbd 201 7 the the DT cord-264489-h1n9ywbd 201 8 line line NN cord-264489-h1n9ywbd 201 9 diagrams diagram NNS cord-264489-h1n9ywbd 201 10 . . . cord-264489-h1n9ywbd 201 11 _SP cord-264489-h1n9ywbd 202 1 Genome3D Genome3D NNP cord-264489-h1n9ywbd 202 2 : : : cord-264489-h1n9ywbd 203 1 a a DT cord-264489-h1n9ywbd 203 2 viewer viewer NN cord-264489-h1n9ywbd 203 3 - - HYPH cord-264489-h1n9ywbd 203 4 model model NN cord-264489-h1n9ywbd 203 5 framework framework NN cord-264489-h1n9ywbd 203 6 for for IN cord-264489-h1n9ywbd 203 7 integrating integrate VBG cord-264489-h1n9ywbd 203 8 and and CC cord-264489-h1n9ywbd 203 9 visualizing visualize VBG cord-264489-h1n9ywbd 203 10 multi multi JJ cord-264489-h1n9ywbd 203 11 - - JJ cord-264489-h1n9ywbd 203 12 scale scale JJ cord-264489-h1n9ywbd 203 13 epigenomic epigenomic JJ cord-264489-h1n9ywbd 203 14 information information NN cord-264489-h1n9ywbd 203 15 within within IN cord-264489-h1n9ywbd 203 16 a a DT cord-264489-h1n9ywbd 203 17 three three CD cord-264489-h1n9ywbd 203 18 - - HYPH cord-264489-h1n9ywbd 203 19 dimensional dimensional JJ cord-264489-h1n9ywbd 203 20 genome genome NN cord-264489-h1n9ywbd 204 1 The the DT cord-264489-h1n9ywbd 204 2 protein protein NN cord-264489-h1n9ywbd 204 3 data datum NNS cord-264489-h1n9ywbd 204 4 bank bank NN cord-264489-h1n9ywbd 205 1 An an DT cord-264489-h1n9ywbd 205 2 up up JJ cord-264489-h1n9ywbd 205 3 - - HYPH cord-264489-h1n9ywbd 205 4 to to IN cord-264489-h1n9ywbd 205 5 - - HYPH cord-264489-h1n9ywbd 205 6 date date NN cord-264489-h1n9ywbd 205 7 review review NN cord-264489-h1n9ywbd 205 8 of of IN cord-264489-h1n9ywbd 205 9 piglet piglet NNP cord-264489-h1n9ywbd 205 10 isosporosis isosporosis NNP cord-264489-h1n9ywbd 205 11 : : : cord-264489-h1n9ywbd 205 12 new new JJ cord-264489-h1n9ywbd 205 13 insights insight NNS cord-264489-h1n9ywbd 205 14 and and CC cord-264489-h1n9ywbd 205 15 therapeutic therapeutic JJ cord-264489-h1n9ywbd 205 16 perspectives perspective NNS cord-264489-h1n9ywbd 205 17 Cytokines Cytokines NNPS cord-264489-h1n9ywbd 205 18 as as IN cord-264489-h1n9ywbd 205 19 adjuvants adjuvant NNS cord-264489-h1n9ywbd 205 20 for for IN cord-264489-h1n9ywbd 205 21 the the DT cord-264489-h1n9ywbd 205 22 induction induction NN cord-264489-h1n9ywbd 205 23 of of IN cord-264489-h1n9ywbd 205 24 anti anti JJ cord-264489-h1n9ywbd 205 25 - - JJ cord-264489-h1n9ywbd 205 26 human human JJ cord-264489-h1n9ywbd 205 27 immunodeficiency immunodeficiency NN cord-264489-h1n9ywbd 205 28 virus virus NN cord-264489-h1n9ywbd 205 29 peptide peptide NN cord-264489-h1n9ywbd 205 30 immunoglobulin immunoglobulin NN cord-264489-h1n9ywbd 205 31 G G NNP cord-264489-h1n9ywbd 205 32 ( ( -LRB- cord-264489-h1n9ywbd 205 33 IgG IgG NNP cord-264489-h1n9ywbd 205 34 ) ) -RRB- cord-264489-h1n9ywbd 205 35 and and CC cord-264489-h1n9ywbd 205 36 IgA IgA NNP cord-264489-h1n9ywbd 205 37 antibodies antibody NNS cord-264489-h1n9ywbd 205 38 in in IN cord-264489-h1n9ywbd 205 39 serum serum NN cord-264489-h1n9ywbd 205 40 and and CC cord-264489-h1n9ywbd 205 41 mucosal mucosal JJ cord-264489-h1n9ywbd 205 42 secretions secretion NNS cord-264489-h1n9ywbd 205 43 after after IN cord-264489-h1n9ywbd 205 44 nasal nasal NN cord-264489-h1n9ywbd 205 45 immunization immunization NN cord-264489-h1n9ywbd 205 46 mentha mentha NN cord-264489-h1n9ywbd 205 47 : : : cord-264489-h1n9ywbd 205 48 a a DT cord-264489-h1n9ywbd 205 49 resource resource NN cord-264489-h1n9ywbd 205 50 for for IN cord-264489-h1n9ywbd 205 51 browsing browse VBG cord-264489-h1n9ywbd 205 52 integrated integrate VBN cord-264489-h1n9ywbd 205 53 proteininteraction proteininteraction NN cord-264489-h1n9ywbd 205 54 networks network NNS cord-264489-h1n9ywbd 206 1 Technetium-99 technetium-99 NN cord-264489-h1n9ywbd 206 2 m m CD cord-264489-h1n9ywbd 206 3 cysteine cysteine NN cord-264489-h1n9ywbd 206 4 ; ; : cord-264489-h1n9ywbd 206 5 a a DT cord-264489-h1n9ywbd 206 6 novel novel JJ cord-264489-h1n9ywbd 206 7 radiopharmaceutical radiopharmaceutical NN cord-264489-h1n9ywbd 206 8 for for IN cord-264489-h1n9ywbd 206 9 detection detection NN cord-264489-h1n9ywbd 206 10 of of IN cord-264489-h1n9ywbd 206 11 experimental experimental JJ cord-264489-h1n9ywbd 206 12 myocardial myocardial JJ cord-264489-h1n9ywbd 206 13 infarction infarction NN cord-264489-h1n9ywbd 206 14 in in IN cord-264489-h1n9ywbd 206 15 rats rat NNS cord-264489-h1n9ywbd 206 16 CoMFA CoMFA NNP cord-264489-h1n9ywbd 206 17 , , , cord-264489-h1n9ywbd 207 1 CoMSIA CoMSIA NNP cord-264489-h1n9ywbd 207 2 , , , cord-264489-h1n9ywbd 207 3 Topomer Topomer NNP cord-264489-h1n9ywbd 207 4 CoMFA CoMFA NNP cord-264489-h1n9ywbd 207 5 , , , cord-264489-h1n9ywbd 207 6 HQSAR HQSAR NNP cord-264489-h1n9ywbd 207 7 , , , cord-264489-h1n9ywbd 207 8 molecular molecular JJ cord-264489-h1n9ywbd 207 9 docking docking NN cord-264489-h1n9ywbd 207 10 and and CC cord-264489-h1n9ywbd 207 11 molecular molecular JJ cord-264489-h1n9ywbd 207 12 dynamics dynamic NNS cord-264489-h1n9ywbd 207 13 simulations simulation NNS cord-264489-h1n9ywbd 207 14 study study NN cord-264489-h1n9ywbd 207 15 of of IN cord-264489-h1n9ywbd 207 16 triazine triazine NNP cord-264489-h1n9ywbd 207 17 morpholino morpholino NNP cord-264489-h1n9ywbd 207 18 derivatives derivative NNS cord-264489-h1n9ywbd 207 19 as as IN cord-264489-h1n9ywbd 207 20 mTOR mTOR NNP cord-264489-h1n9ywbd 207 21 inhibitors inhibitor NNS cord-264489-h1n9ywbd 207 22 for for IN cord-264489-h1n9ywbd 207 23 the the DT cord-264489-h1n9ywbd 207 24 treatment treatment NN cord-264489-h1n9ywbd 207 25 of of IN cord-264489-h1n9ywbd 207 26 breast breast NN cord-264489-h1n9ywbd 207 27 cancer cancer NN cord-264489-h1n9ywbd 207 28 Discovery Discovery NNP cord-264489-h1n9ywbd 207 29 Studio Studio NNP cord-264489-h1n9ywbd 207 30 Modeling Modeling NNP cord-264489-h1n9ywbd 207 31 Environment Environment NNP cord-264489-h1n9ywbd 207 32 Comparative Comparative NNP cord-264489-h1n9ywbd 207 33 antiradical antiradical JJ cord-264489-h1n9ywbd 207 34 activity activity NN cord-264489-h1n9ywbd 207 35 and and CC cord-264489-h1n9ywbd 207 36 molecular molecular JJ cord-264489-h1n9ywbd 207 37 Docking Docking NNP cord-264489-h1n9ywbd 207 38 / / SYM cord-264489-h1n9ywbd 207 39 Dynamics Dynamics NNP cord-264489-h1n9ywbd 207 40 analysis analysis NN cord-264489-h1n9ywbd 207 41 of of IN cord-264489-h1n9ywbd 207 42 octopamine octopamine NN cord-264489-h1n9ywbd 207 43 and and CC cord-264489-h1n9ywbd 207 44 norepinephrine norepinephrine NN cord-264489-h1n9ywbd 207 45 : : : cord-264489-h1n9ywbd 208 1 the the DT cord-264489-h1n9ywbd 208 2 role role NN cord-264489-h1n9ywbd 208 3 of of IN cord-264489-h1n9ywbd 208 4 OH OH NNP cord-264489-h1n9ywbd 208 5 groups group NNS cord-264489-h1n9ywbd 208 6 Interleukin-18 interleukin-18 NN cord-264489-h1n9ywbd 208 7 and and CC cord-264489-h1n9ywbd 208 8 IL-18 IL-18 NNP cord-264489-h1n9ywbd 208 9 binding bind VBG cord-264489-h1n9ywbd 208 10 protein protein NN cord-264489-h1n9ywbd 208 11 . . . cord-264489-h1n9ywbd 209 1 Front front JJ cord-264489-h1n9ywbd 209 2 Interleukin-18 interleukin-18 NN cord-264489-h1n9ywbd 209 3 A a DT cord-264489-h1n9ywbd 209 4 hypergraph hypergraph NN cord-264489-h1n9ywbd 209 5 - - HYPH cord-264489-h1n9ywbd 209 6 based base VBN cord-264489-h1n9ywbd 209 7 method method NN cord-264489-h1n9ywbd 209 8 for for IN cord-264489-h1n9ywbd 209 9 unification unification NN cord-264489-h1n9ywbd 209 10 of of IN cord-264489-h1n9ywbd 209 11 existing exist VBG cord-264489-h1n9ywbd 209 12 protein protein NN cord-264489-h1n9ywbd 209 13 structure structure NN cord-264489-h1n9ywbd 209 14 - - : cord-264489-h1n9ywbd 209 15 and and CC cord-264489-h1n9ywbd 209 16 sequence sequence NN cord-264489-h1n9ywbd 209 17 - - HYPH cord-264489-h1n9ywbd 209 18 families family NNS cord-264489-h1n9ywbd 209 19 Cation Cation NNP cord-264489-h1n9ywbd 209 20 - - HYPH cord-264489-h1n9ywbd 209 21 π π NNP cord-264489-h1n9ywbd 209 22 interactions interaction NNS cord-264489-h1n9ywbd 209 23 in in IN cord-264489-h1n9ywbd 209 24 structural structural JJ cord-264489-h1n9ywbd 209 25 biology biology NN cord-264489-h1n9ywbd 209 26 Conserved conserve VBN cord-264489-h1n9ywbd 209 27 molecular molecular JJ cord-264489-h1n9ywbd 209 28 signatures signature NNS cord-264489-h1n9ywbd 209 29 in in IN cord-264489-h1n9ywbd 209 30 gp120 gp120 NNP cord-264489-h1n9ywbd 209 31 are be VBP cord-264489-h1n9ywbd 209 32 associated associate VBN cord-264489-h1n9ywbd 209 33 with with IN cord-264489-h1n9ywbd 209 34 the the DT cord-264489-h1n9ywbd 209 35 genetic genetic JJ cord-264489-h1n9ywbd 209 36 bottleneck bottleneck NN cord-264489-h1n9ywbd 209 37 during during IN cord-264489-h1n9ywbd 209 38 simian simian JJ cord-264489-h1n9ywbd 209 39 immunodeficiency immunodeficiency NN cord-264489-h1n9ywbd 209 40 virus virus NN cord-264489-h1n9ywbd 209 41 ( ( -LRB- cord-264489-h1n9ywbd 209 42 SIV SIV NNP cord-264489-h1n9ywbd 209 43 ) ) -RRB- cord-264489-h1n9ywbd 209 44 , , , cord-264489-h1n9ywbd 209 45 SIVhuman SIVhuman NNP cord-264489-h1n9ywbd 209 46 immunodeficiency immunodeficiency NN cord-264489-h1n9ywbd 209 47 virus virus NN cord-264489-h1n9ywbd 209 48 ( ( -LRB- cord-264489-h1n9ywbd 209 49 SHIV SHIV NNP cord-264489-h1n9ywbd 209 50 ) ) -RRB- cord-264489-h1n9ywbd 209 51 , , , cord-264489-h1n9ywbd 209 52 and and CC cord-264489-h1n9ywbd 209 53 HIV HIV NNP cord-264489-h1n9ywbd 209 54 type type NN cord-264489-h1n9ywbd 209 55 1 1 CD cord-264489-h1n9ywbd 209 56 ( ( -LRB- cord-264489-h1n9ywbd 209 57 HIV-1 HIV-1 NNP cord-264489-h1n9ywbd 209 58 ) ) -RRB- cord-264489-h1n9ywbd 209 59 transmission transmission NN cord-264489-h1n9ywbd 210 1 Interleukin-18 Interleukin-18 NNP cord-264489-h1n9ywbd 210 2 SWISS swiss JJ cord-264489-h1n9ywbd 210 3 - - HYPH cord-264489-h1n9ywbd 210 4 MODEL model NN cord-264489-h1n9ywbd 210 5 and and CC cord-264489-h1n9ywbd 210 6 the the DT cord-264489-h1n9ywbd 210 7 Swiss Swiss NNP cord-264489-h1n9ywbd 210 8 - - HYPH cord-264489-h1n9ywbd 210 9 PdbViewer PdbViewer NNP cord-264489-h1n9ywbd 210 10 : : : cord-264489-h1n9ywbd 211 1 an an DT cord-264489-h1n9ywbd 211 2 environment environment NN cord-264489-h1n9ywbd 211 3 for for IN cord-264489-h1n9ywbd 211 4 comparative comparative JJ cord-264489-h1n9ywbd 211 5 protein protein NN cord-264489-h1n9ywbd 211 6 modeling modeling NN cord-264489-h1n9ywbd 211 7 Mechanism mechanism NN cord-264489-h1n9ywbd 211 8 for for IN cord-264489-h1n9ywbd 211 9 IL-15-driven IL-15-driven NNP cord-264489-h1n9ywbd 211 10 B b NN cord-264489-h1n9ywbd 211 11 cell cell NN cord-264489-h1n9ywbd 211 12 chronic chronic NN cord-264489-h1n9ywbd 211 13 lymphocytic lymphocytic JJ cord-264489-h1n9ywbd 211 14 leukemia leukemia NN cord-264489-h1n9ywbd 211 15 cycling cycling NN cord-264489-h1n9ywbd 211 16 : : : cord-264489-h1n9ywbd 211 17 roles role NNS cord-264489-h1n9ywbd 211 18 for for IN cord-264489-h1n9ywbd 211 19 AKT AKT NNP cord-264489-h1n9ywbd 211 20 and and CC cord-264489-h1n9ywbd 211 21 STAT5 stat5 NN cord-264489-h1n9ywbd 211 22 in in IN cord-264489-h1n9ywbd 211 23 modulating modulate VBG cord-264489-h1n9ywbd 211 24 cyclin cyclin NN cord-264489-h1n9ywbd 211 25 D2 d2 NN cord-264489-h1n9ywbd 211 26 and and CC cord-264489-h1n9ywbd 211 27 DNA dna NN cord-264489-h1n9ywbd 211 28 damage damage NN cord-264489-h1n9ywbd 211 29 response response NN cord-264489-h1n9ywbd 211 30 proteins protein NNS cord-264489-h1n9ywbd 211 31 Human human JJ cord-264489-h1n9ywbd 211 32 anti anti JJ cord-264489-h1n9ywbd 211 33 - - JJ cord-264489-h1n9ywbd 211 34 human human JJ cord-264489-h1n9ywbd 211 35 IL-18 IL-18 NNP cord-264489-h1n9ywbd 211 36 antibody antibody NN cord-264489-h1n9ywbd 211 37 recognizing recognize VBG cord-264489-h1n9ywbd 211 38 the the DT cord-264489-h1n9ywbd 211 39 IL-18-binding il-18-binde VBG cord-264489-h1n9ywbd 211 40 site site NN cord-264489-h1n9ywbd 211 41 3 3 CD cord-264489-h1n9ywbd 211 42 with with IN cord-264489-h1n9ywbd 211 43 IL-18 IL-18 NNP cord-264489-h1n9ywbd 211 44 signaling signal VBG cord-264489-h1n9ywbd 211 45 blocking block VBG cord-264489-h1n9ywbd 211 46 activity activity NN cord-264489-h1n9ywbd 211 47 BioASF BioASF NNP cord-264489-h1n9ywbd 211 48 : : : cord-264489-h1n9ywbd 211 49 a a DT cord-264489-h1n9ywbd 211 50 framework framework NN cord-264489-h1n9ywbd 211 51 for for IN cord-264489-h1n9ywbd 211 52 automatically automatically RB cord-264489-h1n9ywbd 211 53 generating generate VBG cord-264489-h1n9ywbd 211 54 executable executable JJ cord-264489-h1n9ywbd 211 55 pathway pathway NN cord-264489-h1n9ywbd 211 56 models model NNS cord-264489-h1n9ywbd 211 57 specified specify VBN cord-264489-h1n9ywbd 211 58 in in IN cord-264489-h1n9ywbd 211 59 BioPAX biopax JJ cord-264489-h1n9ywbd 211 60 Amino amino NN cord-264489-h1n9ywbd 211 61 acid acid NN cord-264489-h1n9ywbd 211 62 substitution substitution NN cord-264489-h1n9ywbd 211 63 matrices matrix NNS cord-264489-h1n9ywbd 211 64 from from IN cord-264489-h1n9ywbd 211 65 protein protein NN cord-264489-h1n9ywbd 211 66 blocks block NNS cord-264489-h1n9ywbd 212 1 Combinatorial combinatorial JJ cord-264489-h1n9ywbd 212 2 coarse coarse NN cord-264489-h1n9ywbd 212 3 - - HYPH cord-264489-h1n9ywbd 212 4 graining graining NN cord-264489-h1n9ywbd 212 5 of of IN cord-264489-h1n9ywbd 212 6 molecular molecular JJ cord-264489-h1n9ywbd 212 7 dynamics dynamic NNS cord-264489-h1n9ywbd 212 8 simulations simulation NNS cord-264489-h1n9ywbd 212 9 for for IN cord-264489-h1n9ywbd 212 10 detecting detect VBG cord-264489-h1n9ywbd 212 11 relationships relationship NNS cord-264489-h1n9ywbd 212 12 between between IN cord-264489-h1n9ywbd 212 13 local local JJ cord-264489-h1n9ywbd 212 14 configurations configuration NNS cord-264489-h1n9ywbd 212 15 and and CC cord-264489-h1n9ywbd 212 16 overall overall JJ cord-264489-h1n9ywbd 212 17 conformations conformation NNS cord-264489-h1n9ywbd 212 18 Docking dock VBG cord-264489-h1n9ywbd 212 19 simulation simulation NN cord-264489-h1n9ywbd 212 20 and and CC cord-264489-h1n9ywbd 212 21 antibiotic antibiotic JJ cord-264489-h1n9ywbd 212 22 discovery discovery NN cord-264489-h1n9ywbd 212 23 targeting target VBG cord-264489-h1n9ywbd 212 24 the the DT cord-264489-h1n9ywbd 212 25 MlaC MlaC NNP cord-264489-h1n9ywbd 212 26 protein protein NN cord-264489-h1n9ywbd 212 27 in in IN cord-264489-h1n9ywbd 212 28 Gram gram NN cord-264489-h1n9ywbd 212 29 - - HYPH cord-264489-h1n9ywbd 212 30 negative negative JJ cord-264489-h1n9ywbd 212 31 bacteria bacteria NNS cord-264489-h1n9ywbd 212 32 VMD VMD NNP cord-264489-h1n9ywbd 212 33 : : : cord-264489-h1n9ywbd 213 1 Visual visual JJ cord-264489-h1n9ywbd 213 2 molecular molecular JJ cord-264489-h1n9ywbd 213 3 dynamics dynamic NNS cord-264489-h1n9ywbd 214 1 The the DT cord-264489-h1n9ywbd 214 2 structural structural JJ cord-264489-h1n9ywbd 214 3 basis basis NN cord-264489-h1n9ywbd 214 4 of of IN cord-264489-h1n9ywbd 214 5 the the DT cord-264489-h1n9ywbd 214 6 farnesylated farnesylate VBN cord-264489-h1n9ywbd 214 7 and and CC cord-264489-h1n9ywbd 214 8 methylated methylate VBN cord-264489-h1n9ywbd 214 9 KRas4B KRas4B NNP cord-264489-h1n9ywbd 214 10 interaction interaction NN cord-264489-h1n9ywbd 214 11 with with IN cord-264489-h1n9ywbd 214 12 calmodulin calmodulin NN cord-264489-h1n9ywbd 214 13 On on IN cord-264489-h1n9ywbd 214 14 the the DT cord-264489-h1n9ywbd 214 15 origin origin NN cord-264489-h1n9ywbd 214 16 of of IN cord-264489-h1n9ywbd 214 17 biomolecular biomolecular JJ cord-264489-h1n9ywbd 214 18 networks network NNS cord-264489-h1n9ywbd 214 19 Essential essential JJ cord-264489-h1n9ywbd 214 20 protein protein NN cord-264489-h1n9ywbd 214 21 identification identification NN cord-264489-h1n9ywbd 214 22 based base VBN cord-264489-h1n9ywbd 214 23 on on IN cord-264489-h1n9ywbd 214 24 essential essential JJ cord-264489-h1n9ywbd 214 25 protein protein NN cord-264489-h1n9ywbd 214 26 - - HYPH cord-264489-h1n9ywbd 214 27 protein protein NN cord-264489-h1n9ywbd 214 28 interaction interaction NN cord-264489-h1n9ywbd 214 29 prediction prediction NN cord-264489-h1n9ywbd 214 30 by by IN cord-264489-h1n9ywbd 214 31 Integrated Integrated NNP cord-264489-h1n9ywbd 214 32 Edge Edge NNP cord-264489-h1n9ywbd 214 33 Weights Weights NNP cord-264489-h1n9ywbd 214 34 Structure Structure NNP cord-264489-h1n9ywbd 214 35 - - HYPH cord-264489-h1n9ywbd 214 36 based base VBN cord-264489-h1n9ywbd 214 37 virtual virtual JJ cord-264489-h1n9ywbd 214 38 screening screening NN cord-264489-h1n9ywbd 214 39 of of IN cord-264489-h1n9ywbd 214 40 influenza influenza NN cord-264489-h1n9ywbd 214 41 virus virus NN cord-264489-h1n9ywbd 214 42 RNA RNA NNP cord-264489-h1n9ywbd 214 43 polymerase polymerase NN cord-264489-h1n9ywbd 214 44 inhibitors inhibitor NNS cord-264489-h1n9ywbd 214 45 from from IN cord-264489-h1n9ywbd 214 46 natural natural JJ cord-264489-h1n9ywbd 214 47 compounds compound NNS cord-264489-h1n9ywbd 214 48 : : : cord-264489-h1n9ywbd 214 49 Molecular molecular JJ cord-264489-h1n9ywbd 214 50 dynamics dynamic NNS cord-264489-h1n9ywbd 214 51 simulation simulation NN cord-264489-h1n9ywbd 214 52 and and CC cord-264489-h1n9ywbd 214 53 MM MM NNP cord-264489-h1n9ywbd 214 54 - - HYPH cord-264489-h1n9ywbd 214 55 GBSA GBSA NNP cord-264489-h1n9ywbd 214 56 calculation calculation NN cord-264489-h1n9ywbd 214 57 Structural structural JJ cord-264489-h1n9ywbd 214 58 Concepts Concepts NNPS cord-264489-h1n9ywbd 214 59 in in IN cord-264489-h1n9ywbd 214 60 Immunology Immunology NNP cord-264489-h1n9ywbd 214 61 and and CC cord-264489-h1n9ywbd 214 62 Immunochemistry Immunochemistry NNP cord-264489-h1n9ywbd 214 63 . . . cord-264489-h1n9ywbd 215 1 Holt Holt NNP cord-264489-h1n9ywbd 216 1 The the DT cord-264489-h1n9ywbd 216 2 structure structure NN cord-264489-h1n9ywbd 216 3 and and CC cord-264489-h1n9ywbd 216 4 binding binding NN cord-264489-h1n9ywbd 216 5 mode mode NN cord-264489-h1n9ywbd 216 6 of of IN cord-264489-h1n9ywbd 216 7 interleukin-18 interleukin-18 NNP cord-264489-h1n9ywbd 216 8 Expression Expression NNP cord-264489-h1n9ywbd 216 9 , , , cord-264489-h1n9ywbd 216 10 purification purification NN cord-264489-h1n9ywbd 216 11 and and CC cord-264489-h1n9ywbd 216 12 structural structural JJ cord-264489-h1n9ywbd 216 13 analysis analysis NN cord-264489-h1n9ywbd 216 14 of of IN cord-264489-h1n9ywbd 216 15 human human JJ cord-264489-h1n9ywbd 216 16 IL-18 IL-18 NNP cord-264489-h1n9ywbd 216 17 binding bind VBG cord-264489-h1n9ywbd 216 18 protein protein NN cord-264489-h1n9ywbd 216 19 : : : cord-264489-h1n9ywbd 216 20 a a DT cord-264489-h1n9ywbd 216 21 potent potent JJ cord-264489-h1n9ywbd 216 22 therapeutic therapeutic JJ cord-264489-h1n9ywbd 216 23 molecule molecule NN cord-264489-h1n9ywbd 216 24 for for IN cord-264489-h1n9ywbd 216 25 allergy allergy NN cord-264489-h1n9ywbd 216 26 Structural structural JJ cord-264489-h1n9ywbd 216 27 basis basis NN cord-264489-h1n9ywbd 216 28 for for IN cord-264489-h1n9ywbd 216 29 antagonism antagonism NN cord-264489-h1n9ywbd 216 30 of of IN cord-264489-h1n9ywbd 216 31 human human JJ cord-264489-h1n9ywbd 216 32 interleukin interleukin NN cord-264489-h1n9ywbd 216 33 18 18 CD cord-264489-h1n9ywbd 216 34 by by IN cord-264489-h1n9ywbd 216 35 poxvirus poxvirus NNP cord-264489-h1n9ywbd 216 36 interleukin interleukin NNP cord-264489-h1n9ywbd 216 37 18-binding 18-binding CD cord-264489-h1n9ywbd 216 38 protein protein NN cord-264489-h1n9ywbd 217 1 MEGA7 MEGA7 NNP cord-264489-h1n9ywbd 217 2 : : : cord-264489-h1n9ywbd 218 1 Molecular molecular JJ cord-264489-h1n9ywbd 218 2 evolutionary evolutionary JJ cord-264489-h1n9ywbd 218 3 genetics genetics NN cord-264489-h1n9ywbd 218 4 analysis analysis NN cord-264489-h1n9ywbd 218 5 version version NN cord-264489-h1n9ywbd 218 6 7.0 7.0 CD cord-264489-h1n9ywbd 218 7 for for IN cord-264489-h1n9ywbd 218 8 bigger big JJR cord-264489-h1n9ywbd 218 9 datasets dataset NNS cord-264489-h1n9ywbd 218 10 The the DT cord-264489-h1n9ywbd 218 11 interplay interplay NN cord-264489-h1n9ywbd 218 12 of of IN cord-264489-h1n9ywbd 218 13 immune immune JJ cord-264489-h1n9ywbd 218 14 components component NNS cord-264489-h1n9ywbd 218 15 and and CC cord-264489-h1n9ywbd 218 16 ECM ECM NNP cord-264489-h1n9ywbd 218 17 in in IN cord-264489-h1n9ywbd 218 18 oral oral JJ cord-264489-h1n9ywbd 218 19 cancer cancer NN cord-264489-h1n9ywbd 218 20 . . . cord-264489-h1n9ywbd 219 1 bioRxiv biorxiv RB cord-264489-h1n9ywbd 220 1 Molecular molecular JJ cord-264489-h1n9ywbd 220 2 dynamics dynamic NNS cord-264489-h1n9ywbd 220 3 simulations simulation NNS cord-264489-h1n9ywbd 220 4 of of IN cord-264489-h1n9ywbd 220 5 hemoglobin hemoglobin NN cord-264489-h1n9ywbd 220 6 A a NN cord-264489-h1n9ywbd 220 7 in in IN cord-264489-h1n9ywbd 220 8 different different JJ cord-264489-h1n9ywbd 220 9 states state NNS cord-264489-h1n9ywbd 220 10 and and CC cord-264489-h1n9ywbd 220 11 bound bind VBN cord-264489-h1n9ywbd 220 12 to to IN cord-264489-h1n9ywbd 220 13 DPG DPG NNP cord-264489-h1n9ywbd 220 14 : : : cord-264489-h1n9ywbd 220 15 effector effector NN cord-264489-h1n9ywbd 220 16 - - HYPH cord-264489-h1n9ywbd 220 17 linked link VBN cord-264489-h1n9ywbd 220 18 perturbation perturbation NN cord-264489-h1n9ywbd 220 19 of of IN cord-264489-h1n9ywbd 220 20 tertiary tertiary JJ cord-264489-h1n9ywbd 220 21 conformations conformation NNS cord-264489-h1n9ywbd 220 22 and and CC cord-264489-h1n9ywbd 220 23 HbA hba JJ cord-264489-h1n9ywbd 220 24 concerted concerted JJ cord-264489-h1n9ywbd 220 25 dynamics dynamic NNS cord-264489-h1n9ywbd 221 1 Comprehensive comprehensive JJ cord-264489-h1n9ywbd 221 2 analyses analysis NNS cord-264489-h1n9ywbd 221 3 of of IN cord-264489-h1n9ywbd 221 4 tissuespecific tissuespecific JJ cord-264489-h1n9ywbd 221 5 networks network NNS cord-264489-h1n9ywbd 221 6 with with IN cord-264489-h1n9ywbd 221 7 implications implication NNS cord-264489-h1n9ywbd 221 8 to to IN cord-264489-h1n9ywbd 221 9 psychiatric psychiatric JJ cord-264489-h1n9ywbd 221 10 diseases disease NNS cord-264489-h1n9ywbd 221 11 Structure Structure NNP cord-264489-h1n9ywbd 221 12 validation validation NN cord-264489-h1n9ywbd 221 13 by by IN cord-264489-h1n9ywbd 221 14 Calpha Calpha NNP cord-264489-h1n9ywbd 221 15 geometry geometry NN cord-264489-h1n9ywbd 221 16 : : : cord-264489-h1n9ywbd 221 17 phi phi NNP cord-264489-h1n9ywbd 221 18 , , , cord-264489-h1n9ywbd 221 19 psi psi NNP cord-264489-h1n9ywbd 221 20 and and CC cord-264489-h1n9ywbd 221 21 Cbeta Cbeta NNP cord-264489-h1n9ywbd 221 22 deviation deviation NN cord-264489-h1n9ywbd 221 23 T t NN cord-264489-h1n9ywbd 221 24 cell cell NN cord-264489-h1n9ywbd 221 25 differentiation differentiation NN cord-264489-h1n9ywbd 221 26 and and CC cord-264489-h1n9ywbd 221 27 effector effector NN cord-264489-h1n9ywbd 221 28 function function NN cord-264489-h1n9ywbd 222 1 SugarBindDB SugarBindDB NNP cord-264489-h1n9ywbd 222 2 , , , cord-264489-h1n9ywbd 223 1 a a DT cord-264489-h1n9ywbd 223 2 resource resource NN cord-264489-h1n9ywbd 223 3 of of IN cord-264489-h1n9ywbd 223 4 glycan glycan NN cord-264489-h1n9ywbd 223 5 - - HYPH cord-264489-h1n9ywbd 223 6 mediated mediate VBN cord-264489-h1n9ywbd 223 7 host host NN cord-264489-h1n9ywbd 223 8 - - HYPH cord-264489-h1n9ywbd 223 9 pathogen pathogen NN cord-264489-h1n9ywbd 223 10 interactions interaction NNS cord-264489-h1n9ywbd 223 11 The the DT cord-264489-h1n9ywbd 223 12 molecular molecular JJ cord-264489-h1n9ywbd 223 13 mystique mystique NN cord-264489-h1n9ywbd 223 14 of of IN cord-264489-h1n9ywbd 223 15 tetrodotoxin tetrodotoxin NN cord-264489-h1n9ywbd 223 16 Expression expression NN cord-264489-h1n9ywbd 223 17 and and CC cord-264489-h1n9ywbd 223 18 responsiveness responsiveness NN cord-264489-h1n9ywbd 223 19 of of IN cord-264489-h1n9ywbd 223 20 human human JJ cord-264489-h1n9ywbd 223 21 interleukin-18 interleukin-18 NN cord-264489-h1n9ywbd 223 22 receptor receptor NN cord-264489-h1n9ywbd 223 23 ( ( -LRB- cord-264489-h1n9ywbd 223 24 IL-18R IL-18R NNP cord-264489-h1n9ywbd 223 25 ) ) -RRB- cord-264489-h1n9ywbd 223 26 on on IN cord-264489-h1n9ywbd 223 27 hematopoietic hematopoietic JJ cord-264489-h1n9ywbd 223 28 cell cell NN cord-264489-h1n9ywbd 223 29 lines line NNS cord-264489-h1n9ywbd 223 30 TRAM TRAM NNP cord-264489-h1n9ywbd 223 31 is be VBZ cord-264489-h1n9ywbd 223 32 involved involve VBN cord-264489-h1n9ywbd 223 33 in in IN cord-264489-h1n9ywbd 223 34 IL-18 IL-18 NNP cord-264489-h1n9ywbd 223 35 signaling signal VBG cord-264489-h1n9ywbd 223 36 and and CC cord-264489-h1n9ywbd 223 37 functions function NNS cord-264489-h1n9ywbd 223 38 as as IN cord-264489-h1n9ywbd 223 39 a a DT cord-264489-h1n9ywbd 223 40 sorting sorting NN cord-264489-h1n9ywbd 223 41 adaptor adaptor NN cord-264489-h1n9ywbd 223 42 for for IN cord-264489-h1n9ywbd 223 43 MyD88 MyD88 NNP cord-264489-h1n9ywbd 223 44 Scalable scalable JJ cord-264489-h1n9ywbd 223 45 molecular molecular JJ cord-264489-h1n9ywbd 223 46 dynamics dynamic NNS cord-264489-h1n9ywbd 223 47 with with IN cord-264489-h1n9ywbd 223 48 NAMD NAMD NNP cord-264489-h1n9ywbd 223 49 Molecular Molecular NNP cord-264489-h1n9ywbd 223 50 dynamics dynamic NNS cord-264489-h1n9ywbd 223 51 simulation simulation NN cord-264489-h1n9ywbd 223 52 of of IN cord-264489-h1n9ywbd 223 53 the the DT cord-264489-h1n9ywbd 223 54 nanosecond nanosecond NN cord-264489-h1n9ywbd 223 55 pulsed pulse VBN cord-264489-h1n9ywbd 223 56 electric electric JJ cord-264489-h1n9ywbd 223 57 field field NN cord-264489-h1n9ywbd 223 58 effect effect NN cord-264489-h1n9ywbd 223 59 on on IN cord-264489-h1n9ywbd 223 60 kinesin kinesin NN cord-264489-h1n9ywbd 223 61 nanomotor nanomotor NN cord-264489-h1n9ywbd 223 62 Structural structural JJ cord-264489-h1n9ywbd 223 63 biology biology NN cord-264489-h1n9ywbd 223 64 of of IN cord-264489-h1n9ywbd 223 65 tumor tumor NN cord-264489-h1n9ywbd 223 66 necrosis necrosis NN cord-264489-h1n9ywbd 223 67 factor factor NN cord-264489-h1n9ywbd 223 68 demonstrated demonstrate VBN cord-264489-h1n9ywbd 223 69 for for IN cord-264489-h1n9ywbd 223 70 undergraduate undergraduate JJ cord-264489-h1n9ywbd 223 71 instruction instruction NN cord-264489-h1n9ywbd 223 72 by by IN cord-264489-h1n9ywbd 223 73 computer computer NN cord-264489-h1n9ywbd 223 74 simulation simulation NN cord-264489-h1n9ywbd 223 75 Structural structural JJ cord-264489-h1n9ywbd 223 76 characterizations characterization NNS cord-264489-h1n9ywbd 223 77 of of IN cord-264489-h1n9ywbd 223 78 the the DT cord-264489-h1n9ywbd 223 79 fas fas NNP cord-264489-h1n9ywbd 223 80 Receptor Receptor NNP cord-264489-h1n9ywbd 223 81 and and CC cord-264489-h1n9ywbd 223 82 the the DT cord-264489-h1n9ywbd 223 83 fas fas NNP cord-264489-h1n9ywbd 223 84 - - HYPH cord-264489-h1n9ywbd 223 85 associated associate VBN cord-264489-h1n9ywbd 223 86 protein protein NN cord-264489-h1n9ywbd 223 87 with with IN cord-264489-h1n9ywbd 223 88 death death NN cord-264489-h1n9ywbd 223 89 domain domain NN cord-264489-h1n9ywbd 223 90 interactions interaction NNS cord-264489-h1n9ywbd 223 91 Structural structural JJ cord-264489-h1n9ywbd 223 92 modeling modeling NN cord-264489-h1n9ywbd 223 93 of of IN cord-264489-h1n9ywbd 223 94 tumor tumor NN cord-264489-h1n9ywbd 223 95 necrosis necrosis NN cord-264489-h1n9ywbd 223 96 factor factor NN cord-264489-h1n9ywbd 223 97 : : : cord-264489-h1n9ywbd 223 98 a a DT cord-264489-h1n9ywbd 223 99 protein protein NN cord-264489-h1n9ywbd 223 100 of of IN cord-264489-h1n9ywbd 223 101 immunological immunological JJ cord-264489-h1n9ywbd 223 102 importance importance NN cord-264489-h1n9ywbd 223 103 3D 3d NN cord-264489-h1n9ywbd 223 104 modeling modeling NN cord-264489-h1n9ywbd 223 105 of of IN cord-264489-h1n9ywbd 223 106 tumor tumor NN cord-264489-h1n9ywbd 223 107 necrosis necrosis NN cord-264489-h1n9ywbd 223 108 factor factor NN cord-264489-h1n9ywbd 223 109 receptor receptor NN cord-264489-h1n9ywbd 223 110 and and CC cord-264489-h1n9ywbd 223 111 tumor tumor NN cord-264489-h1n9ywbd 223 112 necrosis necrosis NN cord-264489-h1n9ywbd 223 113 factor factor NN cord-264489-h1n9ywbd 223 114 - - HYPH cord-264489-h1n9ywbd 223 115 bound bind VBN cord-264489-h1n9ywbd 223 116 receptor receptor NN cord-264489-h1n9ywbd 223 117 systems system NNS cord-264489-h1n9ywbd 223 118 Structure structure NN cord-264489-h1n9ywbd 223 119 and and CC cord-264489-h1n9ywbd 223 120 function function NN cord-264489-h1n9ywbd 223 121 of of IN cord-264489-h1n9ywbd 223 122 an an DT cord-264489-h1n9ywbd 223 123 inflammatory inflammatory JJ cord-264489-h1n9ywbd 223 124 cytokine cytokine NN cord-264489-h1n9ywbd 223 125 , , , cord-264489-h1n9ywbd 223 126 interleukin-2 interleukin-2 RB cord-264489-h1n9ywbd 223 127 , , , cord-264489-h1n9ywbd 223 128 analyzed analyze VBD cord-264489-h1n9ywbd 223 129 using use VBG cord-264489-h1n9ywbd 223 130 the the DT cord-264489-h1n9ywbd 223 131 bioinformatic bioinformatic JJ cord-264489-h1n9ywbd 223 132 approach approach NN cord-264489-h1n9ywbd 223 133 Structural structural JJ cord-264489-h1n9ywbd 223 134 and and CC cord-264489-h1n9ywbd 223 135 molecular molecular JJ cord-264489-h1n9ywbd 223 136 analyses analysis NNS cord-264489-h1n9ywbd 223 137 of of IN cord-264489-h1n9ywbd 223 138 functional functional JJ cord-264489-h1n9ywbd 223 139 epitopes epitope NNS cord-264489-h1n9ywbd 223 140 and and CC cord-264489-h1n9ywbd 223 141 escape escape VB cord-264489-h1n9ywbd 223 142 mutants mutant NNS cord-264489-h1n9ywbd 223 143 in in IN cord-264489-h1n9ywbd 223 144 Japanese japanese JJ cord-264489-h1n9ywbd 223 145 encephalitis encephalitis RB cord-264489-h1n9ywbd 223 146 virus virus NN cord-264489-h1n9ywbd 223 147 envelope envelope NN cord-264489-h1n9ywbd 223 148 protein protein NN cord-264489-h1n9ywbd 223 149 domain domain NN cord-264489-h1n9ywbd 223 150 III iii CD cord-264489-h1n9ywbd 223 151 Role role NN cord-264489-h1n9ywbd 223 152 of of IN cord-264489-h1n9ywbd 223 153 protecting protect VBG cord-264489-h1n9ywbd 223 154 groups group NNS cord-264489-h1n9ywbd 223 155 in in IN cord-264489-h1n9ywbd 223 156 the the DT cord-264489-h1n9ywbd 223 157 preparation preparation NN cord-264489-h1n9ywbd 223 158 of of IN cord-264489-h1n9ywbd 223 159 thiolate thiolate NN cord-264489-h1n9ywbd 223 160 complexes complex NNS cord-264489-h1n9ywbd 223 161 of of IN cord-264489-h1n9ywbd 223 162 technetium-99 technetium-99 NN cord-264489-h1n9ywbd 223 163 m m NN cord-264489-h1n9ywbd 223 164 using use VBG cord-264489-h1n9ywbd 223 165 cysteine cysteine NN cord-264489-h1n9ywbd 223 166 as as IN cord-264489-h1n9ywbd 223 167 a a DT cord-264489-h1n9ywbd 223 168 model model NN cord-264489-h1n9ywbd 223 169 Molecular molecular JJ cord-264489-h1n9ywbd 223 170 modeling modeling NN cord-264489-h1n9ywbd 223 171 of of IN cord-264489-h1n9ywbd 223 172 estrogen estrogen NN cord-264489-h1n9ywbd 223 173 receptor receptor NN cord-264489-h1n9ywbd 223 174 using use VBG cord-264489-h1n9ywbd 223 175 molecular molecular JJ cord-264489-h1n9ywbd 223 176 operating operate VBG cord-264489-h1n9ywbd 223 177 environment environment NN cord-264489-h1n9ywbd 223 178 Cysteine cysteine NN cord-264489-h1n9ywbd 223 179 residues residue NNS cord-264489-h1n9ywbd 223 180 in in IN cord-264489-h1n9ywbd 223 181 heavy heavy JJ cord-264489-h1n9ywbd 223 182 metal metal NN cord-264489-h1n9ywbd 223 183 binding bind VBG cord-264489-h1n9ywbd 223 184 proteins protein NNS cord-264489-h1n9ywbd 223 185 : : : cord-264489-h1n9ywbd 223 186 structural structural JJ cord-264489-h1n9ywbd 223 187 insights insight NNS cord-264489-h1n9ywbd 223 188 and and CC cord-264489-h1n9ywbd 223 189 comparison comparison NN cord-264489-h1n9ywbd 223 190 with with IN cord-264489-h1n9ywbd 223 191 leucine leucine NN cord-264489-h1n9ywbd 223 192 binding bind VBG cord-264489-h1n9ywbd 223 193 protein protein NN cord-264489-h1n9ywbd 223 194 Cytoscape Cytoscape NNP cord-264489-h1n9ywbd 223 195 : : : cord-264489-h1n9ywbd 223 196 a a DT cord-264489-h1n9ywbd 223 197 software software NN cord-264489-h1n9ywbd 223 198 environment environment NN cord-264489-h1n9ywbd 223 199 for for IN cord-264489-h1n9ywbd 223 200 integrated integrated JJ cord-264489-h1n9ywbd 223 201 models model NNS cord-264489-h1n9ywbd 223 202 of of IN cord-264489-h1n9ywbd 223 203 biomolecular biomolecular JJ cord-264489-h1n9ywbd 223 204 interaction interaction NN cord-264489-h1n9ywbd 223 205 networks network NNS cord-264489-h1n9ywbd 223 206 Fast fast RB cord-264489-h1n9ywbd 223 207 , , , cord-264489-h1n9ywbd 223 208 scalable scalable JJ cord-264489-h1n9ywbd 223 209 generation generation NN cord-264489-h1n9ywbd 223 210 of of IN cord-264489-h1n9ywbd 223 211 high high JJ cord-264489-h1n9ywbd 223 212 - - HYPH cord-264489-h1n9ywbd 223 213 quality quality NN cord-264489-h1n9ywbd 223 214 protein protein NN cord-264489-h1n9ywbd 223 215 multiple multiple JJ cord-264489-h1n9ywbd 223 216 sequence sequence NN cord-264489-h1n9ywbd 223 217 alignments alignment NNS cord-264489-h1n9ywbd 223 218 using use VBG cord-264489-h1n9ywbd 223 219 Clustal Clustal NNP cord-264489-h1n9ywbd 223 220 Omega Omega NNP cord-264489-h1n9ywbd 223 221 A a DT cord-264489-h1n9ywbd 223 222 comparative comparative JJ cord-264489-h1n9ywbd 223 223 analysis analysis NN cord-264489-h1n9ywbd 223 224 of of IN cord-264489-h1n9ywbd 223 225 the the DT cord-264489-h1n9ywbd 223 226 foamy foamy NNP cord-264489-h1n9ywbd 223 227 and and CC cord-264489-h1n9ywbd 223 228 ortho ortho NNP cord-264489-h1n9ywbd 223 229 virus virus NN cord-264489-h1n9ywbd 223 230 capsid capsid NN cord-264489-h1n9ywbd 223 231 structures structure NNS cord-264489-h1n9ywbd 223 232 reveals reveal VBZ cord-264489-h1n9ywbd 223 233 an an DT cord-264489-h1n9ywbd 223 234 ancient ancient JJ cord-264489-h1n9ywbd 223 235 domain domain NN cord-264489-h1n9ywbd 223 236 duplication duplication NN cord-264489-h1n9ywbd 224 1 The the DT cord-264489-h1n9ywbd 224 2 structural structural JJ cord-264489-h1n9ywbd 224 3 basis basis NN cord-264489-h1n9ywbd 224 4 for for IN cord-264489-h1n9ywbd 224 5 receptor receptor NN cord-264489-h1n9ywbd 224 6 recognition recognition NN cord-264489-h1n9ywbd 224 7 of of IN cord-264489-h1n9ywbd 224 8 human human NN cord-264489-h1n9ywbd 224 9 interleukin-18 interleukin-18 NNP cord-264489-h1n9ywbd 224 10 An an DT cord-264489-h1n9ywbd 224 11 innate innate JJ cord-264489-h1n9ywbd 224 12 interaction interaction NN cord-264489-h1n9ywbd 224 13 between between IN cord-264489-h1n9ywbd 224 14 IL-18 IL-18 NNP cord-264489-h1n9ywbd 224 15 and and CC cord-264489-h1n9ywbd 224 16 the the DT cord-264489-h1n9ywbd 224 17 propeptide propeptide NN cord-264489-h1n9ywbd 224 18 that that WDT cord-264489-h1n9ywbd 224 19 inactivates inactivate VBZ cord-264489-h1n9ywbd 224 20 its -PRON- PRP$ cord-264489-h1n9ywbd 224 21 precursor precursor NN cord-264489-h1n9ywbd 224 22 form form NN cord-264489-h1n9ywbd 224 23 Watermediated watermediate VBN cord-264489-h1n9ywbd 224 24 interactions interaction NNS cord-264489-h1n9ywbd 224 25 in in IN cord-264489-h1n9ywbd 224 26 the the DT cord-264489-h1n9ywbd 224 27 CRP crp NN cord-264489-h1n9ywbd 224 28 - - HYPH cord-264489-h1n9ywbd 224 29 cAMP camp NN cord-264489-h1n9ywbd 224 30 - - HYPH cord-264489-h1n9ywbd 224 31 DNA dna NN cord-264489-h1n9ywbd 224 32 complex complex NN cord-264489-h1n9ywbd 224 33 : : : cord-264489-h1n9ywbd 225 1 does do VBZ cord-264489-h1n9ywbd 225 2 water water NN cord-264489-h1n9ywbd 225 3 mediate mediate VB cord-264489-h1n9ywbd 225 4 sequence sequence NN cord-264489-h1n9ywbd 225 5 - - HYPH cord-264489-h1n9ywbd 225 6 specific specific JJ cord-264489-h1n9ywbd 225 7 binding binding NN cord-264489-h1n9ywbd 225 8 at at IN cord-264489-h1n9ywbd 225 9 the the DT cord-264489-h1n9ywbd 225 10 DNA dna NN cord-264489-h1n9ywbd 225 11 primary primary JJ cord-264489-h1n9ywbd 225 12 - - HYPH cord-264489-h1n9ywbd 225 13 kink kink NN cord-264489-h1n9ywbd 225 14 site site NN cord-264489-h1n9ywbd 225 15 ? ? . cord-264489-h1n9ywbd 226 1 Bioinformatical Bioinformatical NNP cord-264489-h1n9ywbd 226 2 detection detection NN cord-264489-h1n9ywbd 226 3 of of IN cord-264489-h1n9ywbd 226 4 recognition recognition NN cord-264489-h1n9ywbd 226 5 factors factor NNS cord-264489-h1n9ywbd 226 6 for for IN cord-264489-h1n9ywbd 226 7 ubiquitin ubiquitin NN cord-264489-h1n9ywbd 226 8 and and CC cord-264489-h1n9ywbd 226 9 SUMO SUMO NNP cord-264489-h1n9ywbd 226 10 Mesoscopic Mesoscopic NNP cord-264489-h1n9ywbd 226 11 modeling model VBG cord-264489-h1n9ywbd 226 12 as as IN cord-264489-h1n9ywbd 226 13 a a DT cord-264489-h1n9ywbd 226 14 starting starting NN cord-264489-h1n9ywbd 226 15 point point NN cord-264489-h1n9ywbd 226 16 for for IN cord-264489-h1n9ywbd 226 17 computational computational JJ cord-264489-h1n9ywbd 226 18 analyses analysis NNS cord-264489-h1n9ywbd 226 19 of of IN cord-264489-h1n9ywbd 226 20 cystic cystic JJ cord-264489-h1n9ywbd 226 21 fibrosis fibrosis NN cord-264489-h1n9ywbd 226 22 as as IN cord-264489-h1n9ywbd 226 23 a a DT cord-264489-h1n9ywbd 226 24 systemic systemic JJ cord-264489-h1n9ywbd 226 25 disease disease NN cord-264489-h1n9ywbd 226 26 Protein protein NN cord-264489-h1n9ywbd 226 27 - - HYPH cord-264489-h1n9ywbd 226 28 protein protein NN cord-264489-h1n9ywbd 226 29 interaction interaction NN cord-264489-h1n9ywbd 226 30 sites site NNS cord-264489-h1n9ywbd 226 31 prediction prediction NN cord-264489-h1n9ywbd 226 32 by by IN cord-264489-h1n9ywbd 226 33 ensemble ensemble JJ cord-264489-h1n9ywbd 226 34 random random JJ cord-264489-h1n9ywbd 226 35 forests forest NNS cord-264489-h1n9ywbd 226 36 with with IN cord-264489-h1n9ywbd 226 37 synthetic synthetic JJ cord-264489-h1n9ywbd 226 38 minority minority NN cord-264489-h1n9ywbd 226 39 oversampling oversampling NN cord-264489-h1n9ywbd 226 40 technique technique NN cord-264489-h1n9ywbd 226 41 Identification identification NN cord-264489-h1n9ywbd 226 42 of of IN cord-264489-h1n9ywbd 226 43 potential potential JJ cord-264489-h1n9ywbd 226 44 inhibitors inhibitor NNS cord-264489-h1n9ywbd 226 45 of of IN cord-264489-h1n9ywbd 226 46 human human JJ cord-264489-h1n9ywbd 226 47 methionine methionine NN cord-264489-h1n9ywbd 226 48 aminopeptidase aminopeptidase NN cord-264489-h1n9ywbd 226 49 ( ( -LRB- cord-264489-h1n9ywbd 226 50 type type NN cord-264489-h1n9ywbd 226 51 II II NNP cord-264489-h1n9ywbd 226 52 ) ) -RRB- cord-264489-h1n9ywbd 226 53 for for IN cord-264489-h1n9ywbd 226 54 cancer cancer NN cord-264489-h1n9ywbd 226 55 therapy therapy NN cord-264489-h1n9ywbd 226 56 : : : cord-264489-h1n9ywbd 226 57 structure structure NN cord-264489-h1n9ywbd 226 58 - - HYPH cord-264489-h1n9ywbd 226 59 based base VBN cord-264489-h1n9ywbd 226 60 virtual virtual JJ cord-264489-h1n9ywbd 226 61 screening screening NN cord-264489-h1n9ywbd 226 62 , , , cord-264489-h1n9ywbd 226 63 ADMET admet JJ cord-264489-h1n9ywbd 226 64 prediction prediction NN cord-264489-h1n9ywbd 226 65 and and CC cord-264489-h1n9ywbd 226 66 molecular molecular JJ cord-264489-h1n9ywbd 226 67 dynamics dynamic NNS cord-264489-h1n9ywbd 226 68 studies study NNS cord-264489-h1n9ywbd 226 69 Multi Multi NNP cord-264489-h1n9ywbd 226 70 - - JJ cord-264489-h1n9ywbd 226 71 omic omic JJ cord-264489-h1n9ywbd 226 72 analysis analysis NN cord-264489-h1n9ywbd 226 73 of of IN cord-264489-h1n9ywbd 226 74 signalling signal VBG cord-264489-h1n9ywbd 226 75 factors factor NNS cord-264489-h1n9ywbd 226 76 in in IN cord-264489-h1n9ywbd 226 77 inflammatory inflammatory JJ cord-264489-h1n9ywbd 226 78 comorbidities comorbiditie NNS cord-264489-h1n9ywbd 226 79 Generation generation NN cord-264489-h1n9ywbd 226 80 of of IN cord-264489-h1n9ywbd 226 81 highly highly RB cord-264489-h1n9ywbd 226 82 stable stable JJ cord-264489-h1n9ywbd 226 83 IL-18 IL-18 NNP cord-264489-h1n9ywbd 226 84 based base VBN cord-264489-h1n9ywbd 226 85 on on IN cord-264489-h1n9ywbd 226 86 a a DT cord-264489-h1n9ywbd 226 87 ligand ligand NN cord-264489-h1n9ywbd 226 88 - - HYPH cord-264489-h1n9ywbd 226 89 receptor receptor NN cord-264489-h1n9ywbd 226 90 complex complex JJ cord-264489-h1n9ywbd 226 91 structure structure NN cord-264489-h1n9ywbd 226 92 Establishing establish VBG cord-264489-h1n9ywbd 226 93 a a DT cord-264489-h1n9ywbd 226 94 framework framework NN cord-264489-h1n9ywbd 226 95 of of IN cord-264489-h1n9ywbd 226 96 using use VBG cord-264489-h1n9ywbd 226 97 residue residue NN cord-264489-h1n9ywbd 226 98 - - HYPH cord-264489-h1n9ywbd 226 99 residue residue NN cord-264489-h1n9ywbd 226 100 interactions interaction NNS cord-264489-h1n9ywbd 226 101 in in IN cord-264489-h1n9ywbd 226 102 protein protein NN cord-264489-h1n9ywbd 226 103 difference difference NN cord-264489-h1n9ywbd 226 104 network network NN cord-264489-h1n9ywbd 226 105 analysis analysis NN cord-264489-h1n9ywbd 226 106 Role role NN cord-264489-h1n9ywbd 226 107 of of IN cord-264489-h1n9ywbd 226 108 the the DT cord-264489-h1n9ywbd 226 109 inflammasome inflammasome NN cord-264489-h1n9ywbd 226 110 - - HYPH cord-264489-h1n9ywbd 226 111 related relate VBN cord-264489-h1n9ywbd 226 112 cytokines cytokine NNS cord-264489-h1n9ywbd 226 113 Il-1 il-1 RB cord-264489-h1n9ywbd 226 114 and and CC cord-264489-h1n9ywbd 226 115 Il-18 Il-18 NNP cord-264489-h1n9ywbd 226 116 during during IN cord-264489-h1n9ywbd 226 117 infection infection NN cord-264489-h1n9ywbd 226 118 with with IN cord-264489-h1n9ywbd 226 119 murine murine JJ cord-264489-h1n9ywbd 226 120 coronavirus coronavirus NN cord-264489-h1n9ywbd 226 121 TMPyP4 TMPyP4 NNP cord-264489-h1n9ywbd 226 122 porphyrin porphyrin NN cord-264489-h1n9ywbd 226 123 distorts distort VBZ cord-264489-h1n9ywbd 226 124 RNA RNA NNP cord-264489-h1n9ywbd 226 125 Gquadruplex Gquadruplex NNP cord-264489-h1n9ywbd 226 126 structures structure NNS cord-264489-h1n9ywbd 226 127 of of IN cord-264489-h1n9ywbd 226 128 the the DT cord-264489-h1n9ywbd 226 129 disease disease NN cord-264489-h1n9ywbd 226 130 - - HYPH cord-264489-h1n9ywbd 226 131 associated associate VBN cord-264489-h1n9ywbd 226 132 r(GGGGCC)n r(ggggcc)n NN cord-264489-h1n9ywbd 226 133 repeat repeat NN cord-264489-h1n9ywbd 226 134 of of IN cord-264489-h1n9ywbd 226 135 the the DT cord-264489-h1n9ywbd 226 136 C9orf72 C9orf72 NNP cord-264489-h1n9ywbd 226 137 gene gene NN cord-264489-h1n9ywbd 226 138 and and CC cord-264489-h1n9ywbd 226 139 blocks block VBZ cord-264489-h1n9ywbd 226 140 interaction interaction NN cord-264489-h1n9ywbd 226 141 of of IN cord-264489-h1n9ywbd 226 142 RNA rna NN cord-264489-h1n9ywbd 226 143 - - HYPH cord-264489-h1n9ywbd 226 144 binding bind VBG cord-264489-h1n9ywbd 226 145 proteins protein NNS cord-264489-h1n9ywbd 227 1 Positive positive JJ cord-264489-h1n9ywbd 227 2 regulation regulation NN cord-264489-h1n9ywbd 227 3 of of IN cord-264489-h1n9ywbd 227 4 interleukin-1β interleukin-1β NNP cord-264489-h1n9ywbd 227 5 bioactivity bioactivity NN cord-264489-h1n9ywbd 227 6 by by IN cord-264489-h1n9ywbd 227 7 physiological physiological JJ cord-264489-h1n9ywbd 227 8 ROS ROS NNP cord-264489-h1n9ywbd 227 9 - - HYPH cord-264489-h1n9ywbd 227 10 mediated mediate VBN cord-264489-h1n9ywbd 227 11 cysteine cysteine NN cord-264489-h1n9ywbd 227 12 S s NN cord-264489-h1n9ywbd 227 13 - - HYPH cord-264489-h1n9ywbd 227 14 glutathionylation glutathionylation NN cord-264489-h1n9ywbd 228 1 The the DT cord-264489-h1n9ywbd 228 2 author author NN cord-264489-h1n9ywbd 228 3 acknowledges acknowledge VBZ cord-264489-h1n9ywbd 228 4 utilization utilization NN cord-264489-h1n9ywbd 228 5 of of IN cord-264489-h1n9ywbd 228 6 the the DT cord-264489-h1n9ywbd 228 7 following follow VBG cord-264489-h1n9ywbd 228 8 simulation simulation NN cord-264489-h1n9ywbd 228 9 and and CC cord-264489-h1n9ywbd 228 10 visualization visualization NN cord-264489-h1n9ywbd 228 11 software software NN cord-264489-h1n9ywbd 228 12 _SP