id	author	title	date	pages	extension	mime	words	sentences	flesch	summary	cache	txt
cord-017181-ywz6w2po	Maus, Carsten	Component-Based Modelling of RNA Structure Folding	2008		.txt	text/plain	5364	284	51	As this regulating process depends largely on structure formation, modelling of RNA folding would be a big step in the right direction for reflecting attenuation dynamics. Additionally, modelling interactions between mRNA and RNAP as well as mRNA and the ribosome are needed because both influence the kinetic folding process and RNA termination structures break up gene transcription. If observed structures are present during folding simulation, the macro level model can signalise this information and thus trigger dynamics to other components by adding new ports to itself (representing docking sites) or send messages over existing ports. Simulating the RNA folding with Kinfold [12] results in a five times higher amount of the 2-helix conformation than the single hairpin, but their total sum is about 60% of all molecules and thus less misfolded structures can be observed. The pattern observation function of the RNA folding model, which is realised at macro level, allows us to look for an intrinsic transcription termination structure [2] during simulation.	./cache/cord-017181-ywz6w2po.txt	./txt/cord-017181-ywz6w2po.txt