id	author	title	date	pages	extension	mime	words	sentences	flesch	summary	cache	txt
cord-343863-q1y8uscj	Whitney, Joe	Recent Hits Acquired by BLAST (ReHAB): A tool to identify new hits in sequence similarity searches	2005-02-08		.txt	text/plain	3463	179	61	ReHAB compares results from PSI-BLAST searches performed with two versions of a protein sequence database and highlights hits that are present only in the updated database. The complete ReHAB hits database can then be queried by date using a simple GUI to allow the researcher to easily identify new hits; these are highlighted, and pairwise or multiple alignments can be performed to assess the quality of the match. ReHAB consists of four main components ( Figure 1 ): (1) a MySQL relational database that stores information about hits, including biological sequences, alignments between them, and other categorization and annotation data; (2) a Java server that provides access to programs which cannot be run locally by the client on arbitrary user workstations, such as NCBI BLAST and EMBOSS [12] utilities; (3) a Java Swing graphical client, downloaded and launched on client machines using Java Web Start; (4) and a back-end Java program which runs alignment programs and compiles results in the database.	./cache/cord-343863-q1y8uscj.txt	./txt/cord-343863-q1y8uscj.txt