id	author	title	date	pages	extension	mime	words	sentences	flesch	summary	cache	txt
cord-336604-2auhkxce	Kumar, Pramod	Integrated genomic view of SARS-CoV-2 in India	2020-08-03		.txt	text/plain	4927	324	58	Methods: We used ARTIC protocol-based tiling amplicon sequencing of SARS-CoV-2 (n=104) from different states of India using a combination of MinION and MinIT sequencing from Oxford Nanopore Technology to understand how introduction and local transmission occurred. Results: The analyses revealed multiple introductions of SARS-CoV-2 genomes, including the A2a cluster from Europe and the USA, A3 cluster from Middle East and A4 cluster (haplotype redefined) from Southeast Asia (Indonesia, Thailand and Malaysia) and Central Asia (Kyrgyzstan). A total of 127 laboratory-confirmed cases of COVID-19 from targeted testing and available samples at NCDC which represent different geographic locations or states and travel history from different countries during the early phase of the outbreak (Table 1 and Extended data, Supplementary figure S1 [Kumar et al., 2020b] ). We also compared SARS-CoV-2 mutation sites with other six coronavirus sequences (Extended data, Supplementary figure S5b [Kumar et al., 2020b] ).	./cache/cord-336604-2auhkxce.txt	./txt/cord-336604-2auhkxce.txt