id	author	title	date	pages	extension	mime	words	sentences	flesch	summary	cache	txt
cord-335958-dtvlo0kz	Satyam, Rohit	Deciphering the SSR incidences across viral members of Coronaviridae family	2020-09-21		.txt	text/plain	4611	274	55	Thus, the aims of the current study were 1) to analyze various facets of the distribution and dynamics of SSRs in the genomes of Coronaviridae members, 2) to identify patterns of SSR incidences across genomes, if any i.e the underrepresentation/overrepresentation of specific repeat motif classes, 3) the preferential genomic localization of SSRs & 4) to investigate if SSRs serves as mutation hotspots in SARS-CoV-2, a novel SARS strain causing COVID-19 outbreak. Additionally, the attributes of SSRs across genomes under study were quite similar in terms of length (preferentially found to be 12-13 nucleotides long with polyA repeats of varying lengths), GC composition, abundance (SSR frequency didn't exceed 2 irrespective of genome size) and localization. The BED files (eg.sequence_perf_default.tsv) so produced by PERF comprise of SSRs genomic coordinates (Column 1-3) followed by repeat class, repeat Length, repeat Strand, motif Number & actual repeat (more details: https://github.com/RKMlab/perf) and were used for the downstream analysis.	./cache/cord-335958-dtvlo0kz.txt	./txt/cord-335958-dtvlo0kz.txt