id	author	title	date	pages	extension	mime	words	sentences	flesch	summary	cache	txt
cord-343662-scn7b4c6	Delli Ponti, Riccardo	A Method for RNA Structure Prediction Shows Evidence for Structure in lncRNAs	2018-12-03		.txt	text/plain	6568	336	51	CROSSalign is based on the combination of the Computational Recognition Of Secondary Structure (CROSS) algorithm to predict the RNA secondary structure profile at single-nucleotide resolution and the Dynamic Time Warping (DTW) method to align profiles of different lengths. CROSSalign, available at our webpages http://service.tartaglialab.com//new_submission/ crossalign, is based on the combination of two methods: (1) Computational Recognition Of Secondary Structure (CROSS), which is an algorithm trained on experimental data to predict RNA secondary structure profiles without sequence length restrictions and at single-nucleotide resolution (Delli Ponti et al., 2017) ; (2) the Dynamic Time Warping (DTW) algorithm to assess the similarity of two profiles of different lengths (Giorgino, 2009) . We developed the CROSSalign method based on the combination of the CROSS algorithm to predict the RNA secondary structure at single-nucleotide resolution (Delli Ponti et al., 2017) and the DTW algorithm to align profiles of different lengths (Giorgino, 2009 ).	./cache/cord-343662-scn7b4c6.txt	./txt/cord-343662-scn7b4c6.txt