id sid tid token lemma pos cord-276978-xl4u7n6r 1 1 key key NN cord-276978-xl4u7n6r 1 2 : : : cord-276978-xl4u7n6r 2 1 cord-276978-xl4u7n6r cord-276978-xl4u7n6r JJ cord-276978-xl4u7n6r 2 2 authors author NNS cord-276978-xl4u7n6r 2 3 : : : cord-276978-xl4u7n6r 2 4 Jonassen Jonassen NNP cord-276978-xl4u7n6r 2 5 , , , cord-276978-xl4u7n6r 2 6 Christine Christine NNP cord-276978-xl4u7n6r 2 7 Monceyron Monceyron NNP cord-276978-xl4u7n6r 2 8 title title NN cord-276978-xl4u7n6r 2 9 : : : cord-276978-xl4u7n6r 2 10 Detection detection NN cord-276978-xl4u7n6r 2 11 and and CC cord-276978-xl4u7n6r 2 12 Sequence Sequence NNP cord-276978-xl4u7n6r 2 13 Characterization characterization NN cord-276978-xl4u7n6r 2 14 of of IN cord-276978-xl4u7n6r 2 15 the the DT cord-276978-xl4u7n6r 2 16 3′-End 3′-end CD cord-276978-xl4u7n6r 2 17 of of IN cord-276978-xl4u7n6r 2 18 Coronavirus Coronavirus NNP cord-276978-xl4u7n6r 2 19 Genomes Genomes NNPS cord-276978-xl4u7n6r 2 20 Harboring harbor VBG cord-276978-xl4u7n6r 2 21 the the DT cord-276978-xl4u7n6r 2 22 Highly highly RB cord-276978-xl4u7n6r 2 23 Conserved conserve VBN cord-276978-xl4u7n6r 2 24 RNA RNA NNP cord-276978-xl4u7n6r 2 25 Motif motif NN cord-276978-xl4u7n6r 2 26 s2 s2 NN cord-276978-xl4u7n6r 2 27 m m CD cord-276978-xl4u7n6r 2 28 date date NN cord-276978-xl4u7n6r 2 29 : : : cord-276978-xl4u7n6r 2 30 2007 2007 CD cord-276978-xl4u7n6r 2 31 - - SYM cord-276978-xl4u7n6r 2 32 11 11 CD cord-276978-xl4u7n6r 2 33 - - HYPH cord-276978-xl4u7n6r 2 34 28 28 CD cord-276978-xl4u7n6r 2 35 journal journal NN cord-276978-xl4u7n6r 2 36 : : : cord-276978-xl4u7n6r 2 37 SARS- SARS- NNP cord-276978-xl4u7n6r 2 38 and and CC cord-276978-xl4u7n6r 2 39 Other Other NNP cord-276978-xl4u7n6r 2 40 Coronaviruses Coronaviruses NNP cord-276978-xl4u7n6r 3 1 DOI DOI NNP cord-276978-xl4u7n6r 3 2 : : : cord-276978-xl4u7n6r 4 1 10.1007/978 10.1007/978 LS cord-276978-xl4u7n6r 4 2 - - HYPH cord-276978-xl4u7n6r 4 3 1 1 CD cord-276978-xl4u7n6r 4 4 - - HYPH cord-276978-xl4u7n6r 4 5 59745 59745 CD cord-276978-xl4u7n6r 4 6 - - HYPH cord-276978-xl4u7n6r 4 7 181 181 CD cord-276978-xl4u7n6r 4 8 - - SYM cord-276978-xl4u7n6r 4 9 9_3 9_3 CD cord-276978-xl4u7n6r 4 10 sha sha NN cord-276978-xl4u7n6r 4 11 : : : cord-276978-xl4u7n6r 4 12 389d0e7bcfe7b090fc97ac3f5ed8406558401945 389d0e7bcfe7b090fc97ac3f5ed8406558401945 NNP cord-276978-xl4u7n6r 4 13 doc_id doc_id CD cord-276978-xl4u7n6r 4 14 : : : cord-276978-xl4u7n6r 4 15 276978 276978 CD cord-276978-xl4u7n6r 4 16 cord_uid cord_uid NNS cord-276978-xl4u7n6r 4 17 : : : cord-276978-xl4u7n6r 5 1 xl4u7n6r xl4u7n6r NNP cord-276978-xl4u7n6r 6 1 A a DT cord-276978-xl4u7n6r 6 2 remarkably remarkably RB cord-276978-xl4u7n6r 6 3 conserved conserve VBN cord-276978-xl4u7n6r 6 4 43-nucleotide 43-nucleotide CD cord-276978-xl4u7n6r 6 5 - - HYPH cord-276978-xl4u7n6r 6 6 long long JJ cord-276978-xl4u7n6r 6 7 motif motif NN cord-276978-xl4u7n6r 6 8 present present JJ cord-276978-xl4u7n6r 6 9 at at IN cord-276978-xl4u7n6r 6 10 the the DT cord-276978-xl4u7n6r 6 11 3′-end 3′-end CD cord-276978-xl4u7n6r 6 12 of of IN cord-276978-xl4u7n6r 6 13 the the DT cord-276978-xl4u7n6r 6 14 genomes genome NNS cord-276978-xl4u7n6r 6 15 of of IN cord-276978-xl4u7n6r 6 16 several several JJ cord-276978-xl4u7n6r 6 17 members member NNS cord-276978-xl4u7n6r 6 18 of of IN cord-276978-xl4u7n6r 6 19 the the DT cord-276978-xl4u7n6r 6 20 polyadenylated polyadenylated JJ cord-276978-xl4u7n6r 6 21 RNA RNA NNP cord-276978-xl4u7n6r 6 22 virus virus NN cord-276978-xl4u7n6r 6 23 families family NNS cord-276978-xl4u7n6r 6 24 Astroviridae Astroviridae NNP cord-276978-xl4u7n6r 6 25 , , , cord-276978-xl4u7n6r 6 26 Coronaviridae Coronaviridae NNP cord-276978-xl4u7n6r 6 27 , , , cord-276978-xl4u7n6r 6 28 and and CC cord-276978-xl4u7n6r 6 29 Picornaviridae Picornaviridae NNP cord-276978-xl4u7n6r 6 30 can can MD cord-276978-xl4u7n6r 6 31 be be VB cord-276978-xl4u7n6r 6 32 used use VBN cord-276978-xl4u7n6r 6 33 for for IN cord-276978-xl4u7n6r 6 34 the the DT cord-276978-xl4u7n6r 6 35 detection detection NN cord-276978-xl4u7n6r 6 36 and and CC cord-276978-xl4u7n6r 6 37 sequence sequence NN cord-276978-xl4u7n6r 6 38 characterization characterization NN cord-276978-xl4u7n6r 6 39 of of IN cord-276978-xl4u7n6r 6 40 the the DT cord-276978-xl4u7n6r 6 41 viruses virus NNS cord-276978-xl4u7n6r 6 42 harboring harbor VBG cord-276978-xl4u7n6r 6 43 it -PRON- PRP cord-276978-xl4u7n6r 6 44 . . . cord-276978-xl4u7n6r 7 1 The the DT cord-276978-xl4u7n6r 7 2 procedure procedure NN cord-276978-xl4u7n6r 7 3 makes make VBZ cord-276978-xl4u7n6r 7 4 use use NN cord-276978-xl4u7n6r 7 5 of of IN cord-276978-xl4u7n6r 7 6 a a DT cord-276978-xl4u7n6r 7 7 primer primer NN cord-276978-xl4u7n6r 7 8 located locate VBN cord-276978-xl4u7n6r 7 9 in in IN cord-276978-xl4u7n6r 7 10 the the DT cord-276978-xl4u7n6r 7 11 most most RBS cord-276978-xl4u7n6r 7 12 conserved conserved JJ cord-276978-xl4u7n6r 7 13 core core NN cord-276978-xl4u7n6r 7 14 of of IN cord-276978-xl4u7n6r 7 15 s2 s2 NNP cord-276978-xl4u7n6r 7 16 m m NNP cord-276978-xl4u7n6r 7 17 toward toward IN cord-276978-xl4u7n6r 7 18 a a DT cord-276978-xl4u7n6r 7 19 generic generic JJ cord-276978-xl4u7n6r 7 20 anchored anchor VBN cord-276978-xl4u7n6r 7 21 oligo(dT oligo(dt CD cord-276978-xl4u7n6r 7 22 ) ) -RRB- cord-276978-xl4u7n6r 7 23 primer primer NN cord-276978-xl4u7n6r 7 24 in in IN cord-276978-xl4u7n6r 7 25 a a DT cord-276978-xl4u7n6r 7 26 semispecific semispecific NNP cord-276978-xl4u7n6r 7 27 PCR PCR NNP cord-276978-xl4u7n6r 7 28 . . . cord-276978-xl4u7n6r 8 1 This this DT cord-276978-xl4u7n6r 8 2 strategy strategy NN cord-276978-xl4u7n6r 8 3 allows allow VBZ cord-276978-xl4u7n6r 8 4 the the DT cord-276978-xl4u7n6r 8 5 sequencing sequencing NN cord-276978-xl4u7n6r 8 6 of of IN cord-276978-xl4u7n6r 8 7 some some DT cord-276978-xl4u7n6r 8 8 50–100 50–100 CD cord-276978-xl4u7n6r 8 9 nucleotides nucleotide NNS cord-276978-xl4u7n6r 8 10 from from IN cord-276978-xl4u7n6r 8 11 the the DT cord-276978-xl4u7n6r 8 12 3′-end 3′-end CD cord-276978-xl4u7n6r 8 13 of of IN cord-276978-xl4u7n6r 8 14 the the DT cord-276978-xl4u7n6r 8 15 virus virus NN cord-276978-xl4u7n6r 8 16 genome genome NN cord-276978-xl4u7n6r 8 17 , , , cord-276978-xl4u7n6r 8 18 representing represent VBG cord-276978-xl4u7n6r 8 19 sufficient sufficient JJ cord-276978-xl4u7n6r 8 20 sequence sequence NN cord-276978-xl4u7n6r 8 21 information information NN cord-276978-xl4u7n6r 8 22 for for IN cord-276978-xl4u7n6r 8 23 initiation initiation NN cord-276978-xl4u7n6r 8 24 of of IN cord-276978-xl4u7n6r 8 25 further further JJ cord-276978-xl4u7n6r 8 26 genomic genomic JJ cord-276978-xl4u7n6r 8 27 characterization characterization NN cord-276978-xl4u7n6r 8 28 in in IN cord-276978-xl4u7n6r 8 29 a a DT cord-276978-xl4u7n6r 8 30 rapid rapid JJ cord-276978-xl4u7n6r 8 31 amplification amplification NN cord-276978-xl4u7n6r 8 32 of of IN cord-276978-xl4u7n6r 8 33 cDNA cdna NN cord-276978-xl4u7n6r 8 34 ends end NNS cord-276978-xl4u7n6r 8 35 ( ( -LRB- cord-276978-xl4u7n6r 8 36 5′-RACE 5′-race CD cord-276978-xl4u7n6r 8 37 ) ) -RRB- cord-276978-xl4u7n6r 8 38 and and CC cord-276978-xl4u7n6r 8 39 primer primer VB cord-276978-xl4u7n6r 8 40 walking walking NN cord-276978-xl4u7n6r 8 41 strategy strategy NN cord-276978-xl4u7n6r 8 42 . . . cord-276978-xl4u7n6r 9 1 S2 S2 NNP cord-276978-xl4u7n6r 9 2 m m NNP cord-276978-xl4u7n6r 9 3 is be VBZ cord-276978-xl4u7n6r 9 4 a a DT cord-276978-xl4u7n6r 9 5 conserved conserved JJ cord-276978-xl4u7n6r 9 6 motif motif NN cord-276978-xl4u7n6r 9 7 present present JJ cord-276978-xl4u7n6r 9 8 in in IN cord-276978-xl4u7n6r 9 9 the the DT cord-276978-xl4u7n6r 9 10 genomes genome NNS cord-276978-xl4u7n6r 9 11 of of IN cord-276978-xl4u7n6r 9 12 several several JJ cord-276978-xl4u7n6r 9 13 members member NNS cord-276978-xl4u7n6r 9 14 of of IN cord-276978-xl4u7n6r 9 15 the the DT cord-276978-xl4u7n6r 9 16 RNA RNA NNP cord-276978-xl4u7n6r 9 17 virus virus NN cord-276978-xl4u7n6r 9 18 families family NNS cord-276978-xl4u7n6r 9 19 Astroviridae Astroviridae NNP cord-276978-xl4u7n6r 9 20 , , , cord-276978-xl4u7n6r 9 21 Coronaviridae Coronaviridae NNP cord-276978-xl4u7n6r 9 22 , , , cord-276978-xl4u7n6r 9 23 and and CC cord-276978-xl4u7n6r 9 24 Picornaviridae Picornaviridae NNP cord-276978-xl4u7n6r 9 25 ( ( -LRB- cord-276978-xl4u7n6r 9 26 1 1 CD cord-276978-xl4u7n6r 9 27 ) ) -RRB- cord-276978-xl4u7n6r 9 28 . . . cord-276978-xl4u7n6r 10 1 These these DT cord-276978-xl4u7n6r 10 2 viruses virus NNS cord-276978-xl4u7n6r 10 3 have have VBP cord-276978-xl4u7n6r 10 4 single single RB cord-276978-xl4u7n6r 10 5 - - HYPH cord-276978-xl4u7n6r 10 6 stranded strand VBN cord-276978-xl4u7n6r 10 7 positive positive JJ cord-276978-xl4u7n6r 10 8 - - HYPH cord-276978-xl4u7n6r 10 9 sense sense NN cord-276978-xl4u7n6r 10 10 RNA RNA NNP cord-276978-xl4u7n6r 10 11 genomes genome NNS cord-276978-xl4u7n6r 10 12 , , , cord-276978-xl4u7n6r 10 13 6.5 6.5 CD cord-276978-xl4u7n6r 10 14 to to TO cord-276978-xl4u7n6r 10 15 32 32 CD cord-276978-xl4u7n6r 10 16 kb kb NNP cord-276978-xl4u7n6r 10 17 long long RB cord-276978-xl4u7n6r 10 18 , , , cord-276978-xl4u7n6r 10 19 with with IN cord-276978-xl4u7n6r 10 20 a a DT cord-276978-xl4u7n6r 10 21 poly(A poly(a JJ cord-276978-xl4u7n6r 10 22 ) ) -RRB- cord-276978-xl4u7n6r 10 23 tail tail NN cord-276978-xl4u7n6r 10 24 at at IN cord-276978-xl4u7n6r 10 25 their -PRON- PRP$ cord-276978-xl4u7n6r 10 26 3 3 CD cord-276978-xl4u7n6r 10 27 -ends -end NNS cord-276978-xl4u7n6r 10 28 . . . cord-276978-xl4u7n6r 11 1 S2 S2 NNP cord-276978-xl4u7n6r 11 2 m m NNP cord-276978-xl4u7n6r 11 3 is be VBZ cord-276978-xl4u7n6r 11 4 43 43 CD cord-276978-xl4u7n6r 11 5 nucleotides nucleotide NNS cord-276978-xl4u7n6r 11 6 long long JJ cord-276978-xl4u7n6r 11 7 and and CC cord-276978-xl4u7n6r 11 8 forms form VBZ cord-276978-xl4u7n6r 11 9 a a DT cord-276978-xl4u7n6r 11 10 highly highly RB cord-276978-xl4u7n6r 11 11 conserved conserve VBN cord-276978-xl4u7n6r 11 12 RNA RNA NNP cord-276978-xl4u7n6r 11 13 structure structure NN cord-276978-xl4u7n6r 11 14 ( ( -LRB- cord-276978-xl4u7n6r 11 15 2 2 CD cord-276978-xl4u7n6r 11 16 ) ) -RRB- cord-276978-xl4u7n6r 11 17 . . . cord-276978-xl4u7n6r 12 1 In in IN cord-276978-xl4u7n6r 12 2 these these DT cord-276978-xl4u7n6r 12 3 very very RB cord-276978-xl4u7n6r 12 4 different different JJ cord-276978-xl4u7n6r 12 5 and and CC cord-276978-xl4u7n6r 12 6 rapidly rapidly RB cord-276978-xl4u7n6r 12 7 evolving evolve VBG cord-276978-xl4u7n6r 12 8 viruses virus NNS cord-276978-xl4u7n6r 12 9 , , , cord-276978-xl4u7n6r 12 10 the the DT cord-276978-xl4u7n6r 12 11 remarkably remarkably RB cord-276978-xl4u7n6r 12 12 conserved conserved JJ cord-276978-xl4u7n6r 12 13 nature nature NN cord-276978-xl4u7n6r 12 14 of of IN cord-276978-xl4u7n6r 12 15 s2 s2 NNP cord-276978-xl4u7n6r 12 16 m m NNP cord-276978-xl4u7n6r 12 17 , , , cord-276978-xl4u7n6r 12 18 in in IN cord-276978-xl4u7n6r 12 19 both both DT cord-276978-xl4u7n6r 12 20 RNA RNA NNP cord-276978-xl4u7n6r 12 21 sequence sequence NN cord-276978-xl4u7n6r 12 22 and and CC cord-276978-xl4u7n6r 12 23 folding folding NN cord-276978-xl4u7n6r 12 24 , , , cord-276978-xl4u7n6r 12 25 suggests suggest VBZ cord-276978-xl4u7n6r 12 26 an an DT cord-276978-xl4u7n6r 12 27 essential essential JJ cord-276978-xl4u7n6r 12 28 , , , cord-276978-xl4u7n6r 12 29 but but CC cord-276978-xl4u7n6r 12 30 as as RB cord-276978-xl4u7n6r 12 31 yet yet RB cord-276978-xl4u7n6r 12 32 unknown unknown JJ cord-276978-xl4u7n6r 12 33 function function NN cord-276978-xl4u7n6r 12 34 . . . cord-276978-xl4u7n6r 13 1 This this DT cord-276978-xl4u7n6r 13 2 motif motif NN cord-276978-xl4u7n6r 13 3 is be VBZ cord-276978-xl4u7n6r 13 4 located locate VBN cord-276978-xl4u7n6r 13 5 C C NNP cord-276978-xl4u7n6r 13 6 Humana Humana NNP cord-276978-xl4u7n6r 13 7 Press Press NNP cord-276978-xl4u7n6r 13 8 , , , cord-276978-xl4u7n6r 13 9 New New NNP cord-276978-xl4u7n6r 13 10 York York NNP cord-276978-xl4u7n6r 13 11 , , , cord-276978-xl4u7n6r 13 12 NY NY NNP cord-276978-xl4u7n6r 13 13 3 3 CD cord-276978-xl4u7n6r 13 14 , , , cord-276978-xl4u7n6r 13 15 50 50 CD cord-276978-xl4u7n6r 13 16 - - SYM cord-276978-xl4u7n6r 13 17 150 150 CD cord-276978-xl4u7n6r 13 18 nucleotides nucleotide NNS cord-276978-xl4u7n6r 13 19 upstream upstream RB cord-276978-xl4u7n6r 13 20 of of IN cord-276978-xl4u7n6r 13 21 the the DT cord-276978-xl4u7n6r 13 22 3 3 CD cord-276978-xl4u7n6r 13 23 ' ' NN cord-276978-xl4u7n6r 13 24 poly(A poly(a JJ cord-276978-xl4u7n6r 13 25 ) ) -RRB- cord-276978-xl4u7n6r 13 26 tail tail NN cord-276978-xl4u7n6r 13 27 of of IN cord-276978-xl4u7n6r 13 28 these these DT cord-276978-xl4u7n6r 13 29 virus virus NN cord-276978-xl4u7n6r 13 30 genomes genome NNS cord-276978-xl4u7n6r 13 31 . . . cord-276978-xl4u7n6r 14 1 Phylogenetic phylogenetic JJ cord-276978-xl4u7n6r 14 2 considerations consideration NNS cord-276978-xl4u7n6r 14 3 and and CC cord-276978-xl4u7n6r 14 4 the the DT cord-276978-xl4u7n6r 14 5 genomic genomic JJ cord-276978-xl4u7n6r 14 6 position position NN cord-276978-xl4u7n6r 14 7 of of IN cord-276978-xl4u7n6r 14 8 s2 s2 NNP cord-276978-xl4u7n6r 14 9 m m NNP cord-276978-xl4u7n6r 14 10 suggest suggest VBP cord-276978-xl4u7n6r 14 11 that that IN cord-276978-xl4u7n6r 14 12 ancestors ancestor NNS cord-276978-xl4u7n6r 14 13 of of IN cord-276978-xl4u7n6r 14 14 some some DT cord-276978-xl4u7n6r 14 15 of of IN cord-276978-xl4u7n6r 14 16 these these DT cord-276978-xl4u7n6r 14 17 viruses virus NNS cord-276978-xl4u7n6r 14 18 acquired acquire VBD cord-276978-xl4u7n6r 14 19 s2 s2 NNP cord-276978-xl4u7n6r 14 20 m m NNP cord-276978-xl4u7n6r 14 21 by by IN cord-276978-xl4u7n6r 14 22 horizontal horizontal JJ cord-276978-xl4u7n6r 14 23 gene gene NN cord-276978-xl4u7n6r 14 24 transfer transfer NN cord-276978-xl4u7n6r 14 25 . . . cord-276978-xl4u7n6r 15 1 All all DT cord-276978-xl4u7n6r 15 2 of of IN cord-276978-xl4u7n6r 15 3 the the DT cord-276978-xl4u7n6r 15 4 known known JJ cord-276978-xl4u7n6r 15 5 group group NN cord-276978-xl4u7n6r 15 6 3 3 CD cord-276978-xl4u7n6r 15 7 coronaviruses coronaviruse NNS cord-276978-xl4u7n6r 15 8 , , , cord-276978-xl4u7n6r 15 9 including include VBG cord-276978-xl4u7n6r 15 10 infectious infectious JJ cord-276978-xl4u7n6r 15 11 bronchitis bronchitis NN cord-276978-xl4u7n6r 15 12 virus virus NN cord-276978-xl4u7n6r 15 13 ( ( -LRB- cord-276978-xl4u7n6r 15 14 IBV IBV NNP cord-276978-xl4u7n6r 15 15 ) ) -RRB- cord-276978-xl4u7n6r 15 16 , , , cord-276978-xl4u7n6r 15 17 turkey turkey NN cord-276978-xl4u7n6r 15 18 coronavirus coronavirus NN cord-276978-xl4u7n6r 15 19 , , , cord-276978-xl4u7n6r 15 20 pheasant pheasant NN cord-276978-xl4u7n6r 15 21 coronavirus coronavirus NN cord-276978-xl4u7n6r 15 22 , , , cord-276978-xl4u7n6r 15 23 and and CC cord-276978-xl4u7n6r 15 24 the the DT cord-276978-xl4u7n6r 15 25 recently recently RB cord-276978-xl4u7n6r 15 26 characterized characterize VBN cord-276978-xl4u7n6r 15 27 coronaviruses coronaviruse NNS cord-276978-xl4u7n6r 15 28 infecting infect VBG cord-276978-xl4u7n6r 15 29 different different JJ cord-276978-xl4u7n6r 15 30 wild wild JJ cord-276978-xl4u7n6r 15 31 bird bird NN cord-276978-xl4u7n6r 15 32 species specie NNS cord-276978-xl4u7n6r 15 33 ( ( -LRB- cord-276978-xl4u7n6r 15 34 3 3 CD cord-276978-xl4u7n6r 15 35 ) ) -RRB- cord-276978-xl4u7n6r 15 36 , , , cord-276978-xl4u7n6r 15 37 as as RB cord-276978-xl4u7n6r 15 38 well well RB cord-276978-xl4u7n6r 15 39 as as IN cord-276978-xl4u7n6r 15 40 the the DT cord-276978-xl4u7n6r 15 41 group group NN cord-276978-xl4u7n6r 15 42 2 2 CD cord-276978-xl4u7n6r 15 43 coronavirus coronavirus NN cord-276978-xl4u7n6r 15 44 associated associate VBN cord-276978-xl4u7n6r 15 45 with with IN cord-276978-xl4u7n6r 15 46 the the DT cord-276978-xl4u7n6r 15 47 severe severe JJ cord-276978-xl4u7n6r 15 48 acute acute JJ cord-276978-xl4u7n6r 15 49 respiratory respiratory JJ cord-276978-xl4u7n6r 15 50 syndrome syndrome NN cord-276978-xl4u7n6r 15 51 ( ( -LRB- cord-276978-xl4u7n6r 15 52 SARS SARS NNP cord-276978-xl4u7n6r 15 53 ) ) -RRB- cord-276978-xl4u7n6r 15 54 ( ( -LRB- cord-276978-xl4u7n6r 15 55 4 4 CD cord-276978-xl4u7n6r 15 56 , , , cord-276978-xl4u7n6r 15 57 5 5 CD cord-276978-xl4u7n6r 15 58 ) ) -RRB- cord-276978-xl4u7n6r 15 59 have have VBP cord-276978-xl4u7n6r 15 60 been be VBN cord-276978-xl4u7n6r 15 61 found find VBN cord-276978-xl4u7n6r 15 62 to to TO cord-276978-xl4u7n6r 15 63 have have VB cord-276978-xl4u7n6r 15 64 s2 s2 NNP cord-276978-xl4u7n6r 15 65 m m NNP cord-276978-xl4u7n6r 15 66 . . . cord-276978-xl4u7n6r 16 1 As as IN cord-276978-xl4u7n6r 16 2 the the DT cord-276978-xl4u7n6r 16 3 core core NN cord-276978-xl4u7n6r 16 4 of of IN cord-276978-xl4u7n6r 16 5 s2 s2 NNP cord-276978-xl4u7n6r 16 6 m m NNP cord-276978-xl4u7n6r 16 7 is be VBZ cord-276978-xl4u7n6r 16 8 highly highly RB cord-276978-xl4u7n6r 16 9 conserved conserve VBN cord-276978-xl4u7n6r 16 10 in in IN cord-276978-xl4u7n6r 16 11 nucleotide nucleotide JJ cord-276978-xl4u7n6r 16 12 sequence sequence NN cord-276978-xl4u7n6r 16 13 , , , cord-276978-xl4u7n6r 16 14 it -PRON- PRP cord-276978-xl4u7n6r 16 15 is be VBZ cord-276978-xl4u7n6r 16 16 an an DT cord-276978-xl4u7n6r 16 17 ideal ideal JJ cord-276978-xl4u7n6r 16 18 target target NN cord-276978-xl4u7n6r 16 19 for for IN cord-276978-xl4u7n6r 16 20 identification identification NN cord-276978-xl4u7n6r 16 21 of of IN cord-276978-xl4u7n6r 16 22 the the DT cord-276978-xl4u7n6r 16 23 viruses virus NNS cord-276978-xl4u7n6r 16 24 that that WDT cord-276978-xl4u7n6r 16 25 contain contain VBP cord-276978-xl4u7n6r 16 26 it -PRON- PRP cord-276978-xl4u7n6r 16 27 , , , cord-276978-xl4u7n6r 16 28 and and CC cord-276978-xl4u7n6r 16 29 , , , cord-276978-xl4u7n6r 16 30 together together RB cord-276978-xl4u7n6r 16 31 with with IN cord-276978-xl4u7n6r 16 32 a a DT cord-276978-xl4u7n6r 16 33 coronavirus coronavirus NN cord-276978-xl4u7n6r 16 34 replicase replicase NN cord-276978-xl4u7n6r 16 35 sequence sequence NN cord-276978-xl4u7n6r 16 36 , , , cord-276978-xl4u7n6r 16 37 it -PRON- PRP cord-276978-xl4u7n6r 16 38 was be VBD cord-276978-xl4u7n6r 16 39 one one CD cord-276978-xl4u7n6r 16 40 of of IN cord-276978-xl4u7n6r 16 41 the the DT cord-276978-xl4u7n6r 16 42 probes probe NNS cord-276978-xl4u7n6r 16 43 that that WDT cord-276978-xl4u7n6r 16 44 first first RB cord-276978-xl4u7n6r 16 45 identified identify VBD cord-276978-xl4u7n6r 16 46 the the DT cord-276978-xl4u7n6r 16 47 etiology etiology NN cord-276978-xl4u7n6r 16 48 of of IN cord-276978-xl4u7n6r 16 49 SARS SARS NNP cord-276978-xl4u7n6r 16 50 as as IN cord-276978-xl4u7n6r 16 51 a a DT cord-276978-xl4u7n6r 16 52 coronavirus coronavirus NN cord-276978-xl4u7n6r 16 53 ( ( -LRB- cord-276978-xl4u7n6r 16 54 4,6 4,6 CD cord-276978-xl4u7n6r 16 55 ) ) -RRB- cord-276978-xl4u7n6r 16 56 . . . cord-276978-xl4u7n6r 17 1 In in IN cord-276978-xl4u7n6r 17 2 this this DT cord-276978-xl4u7n6r 17 3 chapter chapter NN cord-276978-xl4u7n6r 17 4 the the DT cord-276978-xl4u7n6r 17 5 use use NN cord-276978-xl4u7n6r 17 6 of of IN cord-276978-xl4u7n6r 17 7 s2 s2 NNP cord-276978-xl4u7n6r 17 8 m m NNP cord-276978-xl4u7n6r 17 9 as as IN cord-276978-xl4u7n6r 17 10 a a DT cord-276978-xl4u7n6r 17 11 handle handle NN cord-276978-xl4u7n6r 17 12 in in IN cord-276978-xl4u7n6r 17 13 amplification amplification NN cord-276978-xl4u7n6r 17 14 strategies strategy NNS cord-276978-xl4u7n6r 17 15 for for IN cord-276978-xl4u7n6r 17 16 obtaining obtain VBG cord-276978-xl4u7n6r 17 17 sequence sequence NN cord-276978-xl4u7n6r 17 18 information information NN cord-276978-xl4u7n6r 17 19 of of IN cord-276978-xl4u7n6r 17 20 novel novel JJ cord-276978-xl4u7n6r 17 21 coronavirus coronavirus NN cord-276978-xl4u7n6r 17 22 genomes genome NNS cord-276978-xl4u7n6r 17 23 is be VBZ cord-276978-xl4u7n6r 17 24 described describe VBN cord-276978-xl4u7n6r 17 25 . . . cord-276978-xl4u7n6r 17 26 _SP cord-276978-xl4u7n6r 18 1 Determining determine VBG cord-276978-xl4u7n6r 18 2 the the DT cord-276978-xl4u7n6r 18 3 3 3 CD cord-276978-xl4u7n6r 18 4 -end -end NN cord-276978-xl4u7n6r 18 5 sequences sequence NNS cord-276978-xl4u7n6r 18 6 of of IN cord-276978-xl4u7n6r 18 7 unknown unknown JJ cord-276978-xl4u7n6r 18 8 RNA RNA NNP cord-276978-xl4u7n6r 18 9 can can MD cord-276978-xl4u7n6r 18 10 be be VB cord-276978-xl4u7n6r 18 11 cumbersome cumbersome JJ cord-276978-xl4u7n6r 18 12 , , , cord-276978-xl4u7n6r 18 13 and and CC cord-276978-xl4u7n6r 18 14 the the DT cord-276978-xl4u7n6r 18 15 present present JJ cord-276978-xl4u7n6r 18 16 method method NN cord-276978-xl4u7n6r 18 17 makes make VBZ cord-276978-xl4u7n6r 18 18 use use NN cord-276978-xl4u7n6r 18 19 of of IN cord-276978-xl4u7n6r 18 20 s2 s2 NNP cord-276978-xl4u7n6r 18 21 m m NNP cord-276978-xl4u7n6r 18 22 in in IN cord-276978-xl4u7n6r 18 23 some some DT cord-276978-xl4u7n6r 18 24 of of IN cord-276978-xl4u7n6r 18 25 the the DT cord-276978-xl4u7n6r 18 26 coronavirus coronavirus NN cord-276978-xl4u7n6r 18 27 genomes genome NNS cord-276978-xl4u7n6r 18 28 as as IN cord-276978-xl4u7n6r 18 29 a a DT cord-276978-xl4u7n6r 18 30 handle handle NN cord-276978-xl4u7n6r 18 31 for for IN cord-276978-xl4u7n6r 18 32 determination determination NN cord-276978-xl4u7n6r 18 33 of of IN cord-276978-xl4u7n6r 18 34 the the DT cord-276978-xl4u7n6r 18 35 sequences sequence NNS cord-276978-xl4u7n6r 18 36 between between IN cord-276978-xl4u7n6r 18 37 s2 s2 NNP cord-276978-xl4u7n6r 18 38 m m NNP cord-276978-xl4u7n6r 18 39 and and CC cord-276978-xl4u7n6r 18 40 the the DT cord-276978-xl4u7n6r 18 41 3 3 CD cord-276978-xl4u7n6r 18 42 poly(A poly(a VBP cord-276978-xl4u7n6r 18 43 ) ) -RRB- cord-276978-xl4u7n6r 18 44 tail tail NN cord-276978-xl4u7n6r 18 45 of of IN cord-276978-xl4u7n6r 18 46 these these DT cord-276978-xl4u7n6r 18 47 genomes genome NNS cord-276978-xl4u7n6r 18 48 . . . cord-276978-xl4u7n6r 19 1 The the DT cord-276978-xl4u7n6r 19 2 method method NN cord-276978-xl4u7n6r 19 3 can can MD cord-276978-xl4u7n6r 19 4 be be VB cord-276978-xl4u7n6r 19 5 used use VBN cord-276978-xl4u7n6r 19 6 on on IN cord-276978-xl4u7n6r 19 7 RNA RNA NNP cord-276978-xl4u7n6r 19 8 extracted extract VBN cord-276978-xl4u7n6r 19 9 from from IN cord-276978-xl4u7n6r 19 10 clinical clinical JJ cord-276978-xl4u7n6r 19 11 samples sample NNS cord-276978-xl4u7n6r 19 12 ( ( -LRB- cord-276978-xl4u7n6r 19 13 e.g. e.g. RB cord-276978-xl4u7n6r 19 14 , , , cord-276978-xl4u7n6r 19 15 tracheal tracheal JJ cord-276978-xl4u7n6r 19 16 or or CC cord-276978-xl4u7n6r 19 17 cloacal cloacal JJ cord-276978-xl4u7n6r 19 18 swabs swab NNS cord-276978-xl4u7n6r 19 19 ) ) -RRB- cord-276978-xl4u7n6r 19 20 that that WDT cord-276978-xl4u7n6r 19 21 have have VBP cord-276978-xl4u7n6r 19 22 been be VBN cord-276978-xl4u7n6r 19 23 confirmed confirm VBN cord-276978-xl4u7n6r 19 24 to to TO cord-276978-xl4u7n6r 19 25 be be VB cord-276978-xl4u7n6r 19 26 positive positive JJ cord-276978-xl4u7n6r 19 27 for for IN cord-276978-xl4u7n6r 19 28 coronavirus coronavirus NN cord-276978-xl4u7n6r 19 29 , , , cord-276978-xl4u7n6r 19 30 e.g. e.g. RB cord-276978-xl4u7n6r 19 31 , , , cord-276978-xl4u7n6r 19 32 by by IN cord-276978-xl4u7n6r 19 33 RT RT NNP cord-276978-xl4u7n6r 19 34 - - HYPH cord-276978-xl4u7n6r 19 35 PCR PCR NNP cord-276978-xl4u7n6r 19 36 and and CC cord-276978-xl4u7n6r 19 37 sequencing sequencing NN cord-276978-xl4u7n6r 19 38 , , , cord-276978-xl4u7n6r 19 39 using use VBG cord-276978-xl4u7n6r 19 40 pancoronavirus pancoronavirus NNP cord-276978-xl4u7n6r 19 41 primers primer NNS cord-276978-xl4u7n6r 19 42 ( ( -LRB- cord-276978-xl4u7n6r 19 43 7 7 CD cord-276978-xl4u7n6r 19 44 ) ) -RRB- cord-276978-xl4u7n6r 19 45 ( ( -LRB- cord-276978-xl4u7n6r 19 46 see see VB cord-276978-xl4u7n6r 19 47 Note Note NNP cord-276978-xl4u7n6r 19 48 1 1 CD cord-276978-xl4u7n6r 19 49 ) ) -RRB- cord-276978-xl4u7n6r 19 50 . . . cord-276978-xl4u7n6r 20 1 As as IN cord-276978-xl4u7n6r 20 2 s2 s2 NNP cord-276978-xl4u7n6r 20 3 m m NNP cord-276978-xl4u7n6r 20 4 is be VBZ cord-276978-xl4u7n6r 20 5 located locate VBN cord-276978-xl4u7n6r 20 6 only only RB cord-276978-xl4u7n6r 20 7 about about RB cord-276978-xl4u7n6r 20 8 100 100 CD cord-276978-xl4u7n6r 20 9 nucleotides nucleotide NNS cord-276978-xl4u7n6r 20 10 upstream upstream RB cord-276978-xl4u7n6r 20 11 of of IN cord-276978-xl4u7n6r 20 12 the the DT cord-276978-xl4u7n6r 20 13 3 3 CD cord-276978-xl4u7n6r 20 14 poly(A poly(a JJ cord-276978-xl4u7n6r 20 15 ) ) -RRB- cord-276978-xl4u7n6r 20 16 tail tail NN cord-276978-xl4u7n6r 20 17 when when WRB cord-276978-xl4u7n6r 20 18 it -PRON- PRP cord-276978-xl4u7n6r 20 19 is be VBZ cord-276978-xl4u7n6r 20 20 present present JJ cord-276978-xl4u7n6r 20 21 in in IN cord-276978-xl4u7n6r 20 22 the the DT cord-276978-xl4u7n6r 20 23 genomes genome NNS cord-276978-xl4u7n6r 20 24 of of IN cord-276978-xl4u7n6r 20 25 coronaviruses coronaviruse NNS cord-276978-xl4u7n6r 20 26 , , , cord-276978-xl4u7n6r 20 27 only only RB cord-276978-xl4u7n6r 20 28 limited limited JJ cord-276978-xl4u7n6r 20 29 sequence sequence NN cord-276978-xl4u7n6r 20 30 information information NN cord-276978-xl4u7n6r 20 31 can can MD cord-276978-xl4u7n6r 20 32 be be VB cord-276978-xl4u7n6r 20 33 acertained acertaine VBN cord-276978-xl4u7n6r 20 34 from from IN cord-276978-xl4u7n6r 20 35 the the DT cord-276978-xl4u7n6r 20 36 initial initial JJ cord-276978-xl4u7n6r 20 37 amplification amplification NN cord-276978-xl4u7n6r 20 38 product product NN cord-276978-xl4u7n6r 20 39 obtained obtain VBN cord-276978-xl4u7n6r 20 40 using use VBG cord-276978-xl4u7n6r 20 41 a a DT cord-276978-xl4u7n6r 20 42 primer primer NN cord-276978-xl4u7n6r 20 43 located locate VBN cord-276978-xl4u7n6r 20 44 within within IN cord-276978-xl4u7n6r 20 45 s2 s2 NNP cord-276978-xl4u7n6r 20 46 m m NNP cord-276978-xl4u7n6r 20 47 toward toward IN cord-276978-xl4u7n6r 20 48 a a DT cord-276978-xl4u7n6r 20 49 generic generic JJ cord-276978-xl4u7n6r 20 50 primer primer NN cord-276978-xl4u7n6r 20 51 for for IN cord-276978-xl4u7n6r 20 52 polyadenylated polyadenylated JJ cord-276978-xl4u7n6r 20 53 RNA RNA NNP cord-276978-xl4u7n6r 20 54 . . . cord-276978-xl4u7n6r 21 1 This this DT cord-276978-xl4u7n6r 21 2 limited limited JJ cord-276978-xl4u7n6r 21 3 sequence sequence NN cord-276978-xl4u7n6r 21 4 information information NN cord-276978-xl4u7n6r 21 5 is be VBZ cord-276978-xl4u7n6r 21 6 , , , cord-276978-xl4u7n6r 21 7 however however RB cord-276978-xl4u7n6r 21 8 , , , cord-276978-xl4u7n6r 21 9 sufficient sufficient JJ cord-276978-xl4u7n6r 21 10 to to TO cord-276978-xl4u7n6r 21 11 design design VB cord-276978-xl4u7n6r 21 12 virus virus NN cord-276978-xl4u7n6r 21 13 - - HYPH cord-276978-xl4u7n6r 21 14 specific specific JJ cord-276978-xl4u7n6r 21 15 primers primer NNS cord-276978-xl4u7n6r 21 16 that that WDT cord-276978-xl4u7n6r 21 17 can can MD cord-276978-xl4u7n6r 21 18 be be VB cord-276978-xl4u7n6r 21 19 used use VBN cord-276978-xl4u7n6r 21 20 in in IN cord-276978-xl4u7n6r 21 21 a a DT cord-276978-xl4u7n6r 21 22 5 5 CD cord-276978-xl4u7n6r 21 23 -RACE -race NN cord-276978-xl4u7n6r 21 24 strategy strategy NN cord-276978-xl4u7n6r 21 25 that that WDT cord-276978-xl4u7n6r 21 26 , , , cord-276978-xl4u7n6r 21 27 together together RB cord-276978-xl4u7n6r 21 28 with with IN cord-276978-xl4u7n6r 21 29 primer primer NN cord-276978-xl4u7n6r 21 30 walking walking NN cord-276978-xl4u7n6r 21 31 , , , cord-276978-xl4u7n6r 21 32 allow allow VB cord-276978-xl4u7n6r 21 33 sequencing sequencing NN cord-276978-xl4u7n6r 21 34 toward toward IN cord-276978-xl4u7n6r 21 35 the the DT cord-276978-xl4u7n6r 21 36 5 5 CD cord-276978-xl4u7n6r 21 37 -end -end : cord-276978-xl4u7n6r 21 38 of of IN cord-276978-xl4u7n6r 21 39 the the DT cord-276978-xl4u7n6r 21 40 virus virus NN cord-276978-xl4u7n6r 21 41 genomes genome NNS cord-276978-xl4u7n6r 21 42 ( ( -LRB- cord-276978-xl4u7n6r 21 43 8) 8) NNP cord-276978-xl4u7n6r 21 44 . . . cord-276978-xl4u7n6r 21 45 1 1 CD cord-276978-xl4u7n6r 21 46 . . . cord-276978-xl4u7n6r 22 1 For for IN cord-276978-xl4u7n6r 22 2 RT RT NNP cord-276978-xl4u7n6r 22 3 , , , cord-276978-xl4u7n6r 22 4 prepare prepare VB cord-276978-xl4u7n6r 22 5 the the DT cord-276978-xl4u7n6r 22 6 following following JJ cord-276978-xl4u7n6r 22 7 mix mix NN cord-276978-xl4u7n6r 22 8 ( ( -LRB- cord-276978-xl4u7n6r 22 9 per per IN cord-276978-xl4u7n6r 22 10 sample sample NN cord-276978-xl4u7n6r 22 11 ) ) -RRB- cord-276978-xl4u7n6r 22 12 : : : cord-276978-xl4u7n6r 22 13 4 4 CD cord-276978-xl4u7n6r 22 14 l l NN cord-276978-xl4u7n6r 22 15 5X 5x CD cord-276978-xl4u7n6r 22 16 first first JJ cord-276978-xl4u7n6r 22 17 - - HYPH cord-276978-xl4u7n6r 22 18 strand strand NN cord-276978-xl4u7n6r 22 19 buffer buffer NN cord-276978-xl4u7n6r 22 20 , , , cord-276978-xl4u7n6r 22 21 1 1 CD cord-276978-xl4u7n6r 22 22 l l NN cord-276978-xl4u7n6r 22 23 100 100 CD cord-276978-xl4u7n6r 22 24 mM mM NNP cord-276978-xl4u7n6r 22 25 DTT DTT NNP cord-276978-xl4u7n6r 22 26 , , , cord-276978-xl4u7n6r 22 27 1 1 CD cord-276978-xl4u7n6r 22 28 l l NN cord-276978-xl4u7n6r 22 29 dNTP dntp NN cord-276978-xl4u7n6r 23 1 ( ( -LRB- cord-276978-xl4u7n6r 23 2 10 10 CD cord-276978-xl4u7n6r 23 3 mM mm CD cord-276978-xl4u7n6r 23 4 ) ) -RRB- cord-276978-xl4u7n6r 23 5 , , , cord-276978-xl4u7n6r 23 6 1 1 CD cord-276978-xl4u7n6r 23 7 l l NN cord-276978-xl4u7n6r 23 8 anchored anchor VBD cord-276978-xl4u7n6r 23 9 oligo(dT oligo(dt CD cord-276978-xl4u7n6r 23 10 ) ) -RRB- cord-276978-xl4u7n6r 23 11 primer primer NN cord-276978-xl4u7n6r 23 12 ( ( -LRB- cord-276978-xl4u7n6r 23 13 see see VB cord-276978-xl4u7n6r 23 14 Note Note NNP cord-276978-xl4u7n6r 23 15 2 2 CD cord-276978-xl4u7n6r 23 16 ) ) -RRB- cord-276978-xl4u7n6r 23 17 , , , cord-276978-xl4u7n6r 23 18 1 1 CD cord-276978-xl4u7n6r 23 19 l l NN cord-276978-xl4u7n6r 23 20 RNaseOUT rnaseout NN cord-276978-xl4u7n6r 23 21 ( ( -LRB- cord-276978-xl4u7n6r 23 22 40 40 CD cord-276978-xl4u7n6r 23 23 U U NNP cord-276978-xl4u7n6r 23 24 / / SYM cord-276978-xl4u7n6r 23 25 l l NN cord-276978-xl4u7n6r 23 26 ) ) -RRB- cord-276978-xl4u7n6r 23 27 , , , cord-276978-xl4u7n6r 23 28 and and CC cord-276978-xl4u7n6r 23 29 1 1 CD cord-276978-xl4u7n6r 23 30 l l NN cord-276978-xl4u7n6r 23 31 Superscript superscript NN cord-276978-xl4u7n6r 23 32 III III NNP cord-276978-xl4u7n6r 23 33 reverse reverse NN cord-276978-xl4u7n6r 23 34 transcriptase transcriptase NN cord-276978-xl4u7n6r 23 35 . . . cord-276978-xl4u7n6r 24 1 The the DT cord-276978-xl4u7n6r 24 2 mix mix NN cord-276978-xl4u7n6r 24 3 should should MD cord-276978-xl4u7n6r 24 4 be be VB cord-276978-xl4u7n6r 24 5 made make VBN cord-276978-xl4u7n6r 24 6 fresh fresh JJ cord-276978-xl4u7n6r 24 7 , , , cord-276978-xl4u7n6r 24 8 and and CC cord-276978-xl4u7n6r 24 9 stored store VBN cord-276978-xl4u7n6r 24 10 at at IN cord-276978-xl4u7n6r 24 11 4 4 CD cord-276978-xl4u7n6r 24 12 • • NN cord-276978-xl4u7n6r 24 13 C c NN cord-276978-xl4u7n6r 24 14 until until IN cord-276978-xl4u7n6r 24 15 use use NN cord-276978-xl4u7n6r 24 16 . . . cord-276978-xl4u7n6r 25 1 2 2 LS cord-276978-xl4u7n6r 25 2 . . . cord-276978-xl4u7n6r 26 1 Add add VB cord-276978-xl4u7n6r 26 2 11 11 CD cord-276978-xl4u7n6r 26 3 l l NN cord-276978-xl4u7n6r 26 4 RNA RNA NNP cord-276978-xl4u7n6r 26 5 extract extract NN cord-276978-xl4u7n6r 26 6 to to IN cord-276978-xl4u7n6r 26 7 the the DT cord-276978-xl4u7n6r 26 8 9-l 9-l CD cord-276978-xl4u7n6r 26 9 RT RT NNP cord-276978-xl4u7n6r 26 10 mix mix NN cord-276978-xl4u7n6r 26 11 , , , cord-276978-xl4u7n6r 26 12 with with IN cord-276978-xl4u7n6r 26 13 care care NN cord-276978-xl4u7n6r 26 14 taken take VBN cord-276978-xl4u7n6r 26 15 to to TO cord-276978-xl4u7n6r 26 16 avoid avoid VB cord-276978-xl4u7n6r 26 17 air air NN cord-276978-xl4u7n6r 26 18 bubbles bubble NNS cord-276978-xl4u7n6r 26 19 , , , cord-276978-xl4u7n6r 26 20 as as IN cord-276978-xl4u7n6r 26 21 these these DT cord-276978-xl4u7n6r 26 22 can can MD cord-276978-xl4u7n6r 26 23 oxidize oxidize VB cord-276978-xl4u7n6r 26 24 the the DT cord-276978-xl4u7n6r 26 25 reverse reverse JJ cord-276978-xl4u7n6r 26 26 transcriptase transcriptase NN cord-276978-xl4u7n6r 26 27 . . . cord-276978-xl4u7n6r 27 1 The the DT cord-276978-xl4u7n6r 27 2 RT RT NNP cord-276978-xl4u7n6r 27 3 is be VBZ cord-276978-xl4u7n6r 27 4 performed perform VBN cord-276978-xl4u7n6r 27 5 at at IN cord-276978-xl4u7n6r 27 6 50 50 CD cord-276978-xl4u7n6r 27 7 • • NNS cord-276978-xl4u7n6r 27 8 C c NN cord-276978-xl4u7n6r 27 9 for for IN cord-276978-xl4u7n6r 27 10 30 30 CD cord-276978-xl4u7n6r 27 11 min min NN cord-276978-xl4u7n6r 27 12 , , , cord-276978-xl4u7n6r 27 13 followed follow VBN cord-276978-xl4u7n6r 27 14 by by IN cord-276978-xl4u7n6r 27 15 an an DT cord-276978-xl4u7n6r 27 16 enzyme enzyme NN cord-276978-xl4u7n6r 27 17 inactivation inactivation NN cord-276978-xl4u7n6r 27 18 step step NN cord-276978-xl4u7n6r 27 19 at at IN cord-276978-xl4u7n6r 27 20 70 70 CD cord-276978-xl4u7n6r 28 1 • • NNP cord-276978-xl4u7n6r 28 2 C C NNP cord-276978-xl4u7n6r 28 3 for for IN cord-276978-xl4u7n6r 28 4 15 15 CD cord-276978-xl4u7n6r 28 5 min min NN cord-276978-xl4u7n6r 28 6 , , , cord-276978-xl4u7n6r 28 7 and and CC cord-276978-xl4u7n6r 28 8 cooling cool VBG cord-276978-xl4u7n6r 28 9 to to IN cord-276978-xl4u7n6r 28 10 4 4 CD cord-276978-xl4u7n6r 28 11 • • NN cord-276978-xl4u7n6r 28 12 C c NN cord-276978-xl4u7n6r 28 13 thereafter thereafter RB cord-276978-xl4u7n6r 28 14 . . . cord-276978-xl4u7n6r 29 1 3 3 LS cord-276978-xl4u7n6r 29 2 . . . cord-276978-xl4u7n6r 30 1 PCR PCR NNP cord-276978-xl4u7n6r 30 2 is be VBZ cord-276978-xl4u7n6r 30 3 performed perform VBN cord-276978-xl4u7n6r 30 4 using use VBG cord-276978-xl4u7n6r 30 5 the the DT cord-276978-xl4u7n6r 30 6 s2m s2m JJ cord-276978-xl4u7n6r 30 7 - - HYPH cord-276978-xl4u7n6r 30 8 core core JJ cord-276978-xl4u7n6r 30 9 primer primer NN cord-276978-xl4u7n6r 30 10 toward toward IN cord-276978-xl4u7n6r 30 11 a a DT cord-276978-xl4u7n6r 30 12 generic generic JJ cord-276978-xl4u7n6r 30 13 anchored anchor VBN cord-276978-xl4u7n6r 30 14 oligo(dT oligo(dt CD cord-276978-xl4u7n6r 30 15 ) ) -RRB- cord-276978-xl4u7n6r 30 16 primer primer NN cord-276978-xl4u7n6r 30 17 _SP cord-276978-xl4u7n6r 30 18 1 1 CD cord-276978-xl4u7n6r 30 19 . . . cord-276978-xl4u7n6r 31 1 15 15 CD cord-276978-xl4u7n6r 31 2 l l NN cord-276978-xl4u7n6r 31 3 of of IN cord-276978-xl4u7n6r 31 4 the the DT cord-276978-xl4u7n6r 31 5 PCR PCR NNP cord-276978-xl4u7n6r 31 6 products product NNS cord-276978-xl4u7n6r 31 7 are be VBP cord-276978-xl4u7n6r 31 8 visualized visualize VBN cord-276978-xl4u7n6r 31 9 on on IN cord-276978-xl4u7n6r 31 10 a a DT cord-276978-xl4u7n6r 31 11 2 2 CD cord-276978-xl4u7n6r 31 12 % % NN cord-276978-xl4u7n6r 31 13 agarose agarose NN cord-276978-xl4u7n6r 31 14 gel gel NN cord-276978-xl4u7n6r 31 15 . . . cord-276978-xl4u7n6r 32 1 If if IN cord-276978-xl4u7n6r 32 2 s2 s2 NNP cord-276978-xl4u7n6r 32 3 m m NNP cord-276978-xl4u7n6r 32 4 is be VBZ cord-276978-xl4u7n6r 32 5 part part NN cord-276978-xl4u7n6r 32 6 of of IN cord-276978-xl4u7n6r 32 7 the the DT cord-276978-xl4u7n6r 32 8 coronavirus coronavirus NN cord-276978-xl4u7n6r 32 9 genome genome NN cord-276978-xl4u7n6r 32 10 , , , cord-276978-xl4u7n6r 32 11 one one PRP cord-276978-xl4u7n6r 32 12 should should MD cord-276978-xl4u7n6r 32 13 obtain obtain VB cord-276978-xl4u7n6r 32 14 specific specific JJ cord-276978-xl4u7n6r 32 15 amplification amplification NN cord-276978-xl4u7n6r 32 16 of of IN cord-276978-xl4u7n6r 32 17 the the DT cord-276978-xl4u7n6r 32 18 3 3 CD cord-276978-xl4u7n6r 32 19 -end -end : cord-276978-xl4u7n6r 32 20 ( ( -LRB- cord-276978-xl4u7n6r 32 21 see see VB cord-276978-xl4u7n6r 32 22 Note Note NNP cord-276978-xl4u7n6r 32 23 3 3 CD cord-276978-xl4u7n6r 32 24 ) ) -RRB- cord-276978-xl4u7n6r 32 25 . . . cord-276978-xl4u7n6r 33 1 The the DT cord-276978-xl4u7n6r 33 2 PCR PCR NNP cord-276978-xl4u7n6r 33 3 products product NNS cord-276978-xl4u7n6r 33 4 are be VBP cord-276978-xl4u7n6r 33 5 purified purify VBN cord-276978-xl4u7n6r 33 6 directly directly RB cord-276978-xl4u7n6r 33 7 prior prior RB cord-276978-xl4u7n6r 33 8 to to IN cord-276978-xl4u7n6r 33 9 sequencing sequencing NN cord-276978-xl4u7n6r 33 10 reaction reaction NN cord-276978-xl4u7n6r 33 11 , , , cord-276978-xl4u7n6r 33 12 using use VBG cord-276978-xl4u7n6r 33 13 the the DT cord-276978-xl4u7n6r 33 14 QIAquick QIAquick NNP cord-276978-xl4u7n6r 33 15 PCR PCR NNP cord-276978-xl4u7n6r 33 16 purification purification NN cord-276978-xl4u7n6r 33 17 kit kit NN cord-276978-xl4u7n6r 33 18 according accord VBG cord-276978-xl4u7n6r 33 19 to to IN cord-276978-xl4u7n6r 33 20 the the DT cord-276978-xl4u7n6r 33 21 manufacturer manufacturer NN cord-276978-xl4u7n6r 33 22 's 's POS cord-276978-xl4u7n6r 33 23 instructions instruction NNS cord-276978-xl4u7n6r 33 24 , , , cord-276978-xl4u7n6r 33 25 with with IN cord-276978-xl4u7n6r 33 26 a a DT cord-276978-xl4u7n6r 33 27 final final JJ cord-276978-xl4u7n6r 33 28 elution elution NN cord-276978-xl4u7n6r 33 29 volume volume NN cord-276978-xl4u7n6r 33 30 of of IN cord-276978-xl4u7n6r 33 31 30 30 CD cord-276978-xl4u7n6r 33 32 l. l. NN cord-276978-xl4u7n6r 33 33 2 2 CD cord-276978-xl4u7n6r 33 34 . . . cord-276978-xl4u7n6r 34 1 The the DT cord-276978-xl4u7n6r 34 2 cycle cycle NN cord-276978-xl4u7n6r 34 3 sequencing sequencing NN cord-276978-xl4u7n6r 34 4 reaction reaction NN cord-276978-xl4u7n6r 34 5 is be VBZ cord-276978-xl4u7n6r 34 6 performed perform VBN cord-276978-xl4u7n6r 34 7 using use VBG cord-276978-xl4u7n6r 34 8 the the DT cord-276978-xl4u7n6r 34 9 BigDye BigDye NNP cord-276978-xl4u7n6r 34 10 Terminator Terminator NNP cord-276978-xl4u7n6r 34 11 version version NN cord-276978-xl4u7n6r 34 12 1.1 1.1 CD cord-276978-xl4u7n6r 34 13 , , , cord-276978-xl4u7n6r 34 14 especially especially RB cord-276978-xl4u7n6r 34 15 suited suit VBN cord-276978-xl4u7n6r 34 16 for for IN cord-276978-xl4u7n6r 34 17 short short JJ cord-276978-xl4u7n6r 34 18 PCR PCR NNP cord-276978-xl4u7n6r 34 19 products product NNS cord-276978-xl4u7n6r 34 20 . . . cord-276978-xl4u7n6r 35 1 Add add VB cord-276978-xl4u7n6r 35 2 4 4 CD cord-276978-xl4u7n6r 35 3 l l NN cord-276978-xl4u7n6r 35 4 BigDye BigDye NNP cord-276978-xl4u7n6r 35 5 terminator terminator NN cord-276978-xl4u7n6r 35 6 mix mix NN cord-276978-xl4u7n6r 35 7 , , , cord-276978-xl4u7n6r 35 8 1.3 1.3 CD cord-276978-xl4u7n6r 35 9 l l NN cord-276978-xl4u7n6r 35 10 primer primer NN cord-276978-xl4u7n6r 35 11 s2m s2m JJ cord-276978-xl4u7n6r 35 12 - - HYPH cord-276978-xl4u7n6r 35 13 coreseq coreseq NNP cord-276978-xl4u7n6r 35 14 ( ( -LRB- cord-276978-xl4u7n6r 35 15 2.5 2.5 CD cord-276978-xl4u7n6r 35 16 M M NNP cord-276978-xl4u7n6r 35 17 ) ) -RRB- cord-276978-xl4u7n6r 35 18 ( ( -LRB- cord-276978-xl4u7n6r 35 19 see see VB cord-276978-xl4u7n6r 35 20 Note Note NNP cord-276978-xl4u7n6r 35 21 4 4 CD cord-276978-xl4u7n6r 35 22 ) ) -RRB- cord-276978-xl4u7n6r 35 23 to to IN cord-276978-xl4u7n6r 35 24 4.7 4.7 CD cord-276978-xl4u7n6r 35 25 l l NN cord-276978-xl4u7n6r 35 26 purified purify VBN cord-276978-xl4u7n6r 35 27 PCR PCR NNP cord-276978-xl4u7n6r 35 28 product product NN cord-276978-xl4u7n6r 35 29 , , , cord-276978-xl4u7n6r 35 30 and and CC cord-276978-xl4u7n6r 35 31 perform perform VB cord-276978-xl4u7n6r 35 32 the the DT cord-276978-xl4u7n6r 35 33 cycle cycle NN cord-276978-xl4u7n6r 35 34 sequencing sequencing NN cord-276978-xl4u7n6r 35 35 reaction reaction NN cord-276978-xl4u7n6r 35 36 as as IN cord-276978-xl4u7n6r 35 37 follows follow VBZ cord-276978-xl4u7n6r 35 38 : : : cord-276978-xl4u7n6r 35 39 96 96 CD cord-276978-xl4u7n6r 36 1 • • NNP cord-276978-xl4u7n6r 37 1 C C NNP cord-276978-xl4u7n6r 37 2 for for IN cord-276978-xl4u7n6r 37 3 1 1 CD cord-276978-xl4u7n6r 37 4 min min NN cord-276978-xl4u7n6r 37 5 , , , cord-276978-xl4u7n6r 37 6 followed follow VBN cord-276978-xl4u7n6r 37 7 by by IN cord-276978-xl4u7n6r 37 8 25 25 CD cord-276978-xl4u7n6r 37 9 cycles cycle NNS cord-276978-xl4u7n6r 37 10 ( ( -LRB- cord-276978-xl4u7n6r 37 11 96 96 CD cord-276978-xl4u7n6r 37 12 • • NN cord-276978-xl4u7n6r 37 13 C C NNP cord-276978-xl4u7n6r 37 14 , , , cord-276978-xl4u7n6r 37 15 10 10 CD cord-276978-xl4u7n6r 37 16 sec sec NNS cord-276978-xl4u7n6r 37 17 ; ; : cord-276978-xl4u7n6r 37 18 55 55 CD cord-276978-xl4u7n6r 37 19 • • NNS cord-276978-xl4u7n6r 37 20 C c NN cord-276978-xl4u7n6r 37 21 , , , cord-276978-xl4u7n6r 37 22 5 5 CD cord-276978-xl4u7n6r 37 23 sec sec NNP cord-276978-xl4u7n6r 37 24 ; ; : cord-276978-xl4u7n6r 37 25 60 60 CD cord-276978-xl4u7n6r 37 26 • • NNS cord-276978-xl4u7n6r 37 27 C C NNP cord-276978-xl4u7n6r 37 28 , , , cord-276978-xl4u7n6r 37 29 4 4 CD cord-276978-xl4u7n6r 37 30 min min NNP cord-276978-xl4u7n6r 37 31 ) ) -RRB- cord-276978-xl4u7n6r 37 32 , , , cord-276978-xl4u7n6r 37 33 and and CC cord-276978-xl4u7n6r 37 34 cooling cool VBG cord-276978-xl4u7n6r 37 35 to to IN cord-276978-xl4u7n6r 37 36 4 4 CD cord-276978-xl4u7n6r 37 37 • • NN cord-276978-xl4u7n6r 37 38 C c NN cord-276978-xl4u7n6r 37 39 thereafter thereafter RB cord-276978-xl4u7n6r 37 40 . . . cord-276978-xl4u7n6r 38 1 3 3 LS cord-276978-xl4u7n6r 38 2 . . . cord-276978-xl4u7n6r 39 1 The the DT cord-276978-xl4u7n6r 39 2 cycle cycle NN cord-276978-xl4u7n6r 39 3 sequencing sequencing NN cord-276978-xl4u7n6r 39 4 products product NNS cord-276978-xl4u7n6r 39 5 are be VBP cord-276978-xl4u7n6r 39 6 purified purify VBN cord-276978-xl4u7n6r 39 7 from from IN cord-276978-xl4u7n6r 39 8 unincorporated unincorporated JJ cord-276978-xl4u7n6r 39 9 labeled label VBN cord-276978-xl4u7n6r 39 10 dideoxynucleotides dideoxynucleotide NNS cord-276978-xl4u7n6r 39 11 and and CC cord-276978-xl4u7n6r 39 12 separated separate VBN cord-276978-xl4u7n6r 39 13 by by IN cord-276978-xl4u7n6r 39 14 capillary capillary JJ cord-276978-xl4u7n6r 39 15 electrophoresis electrophoresis NN cord-276978-xl4u7n6r 39 16 on on IN cord-276978-xl4u7n6r 39 17 a a DT cord-276978-xl4u7n6r 39 18 3130xl 3130xl JJ cord-276978-xl4u7n6r 39 19 Genetic Genetic NNP cord-276978-xl4u7n6r 39 20 Analyser analyser NN cord-276978-xl4u7n6r 39 21 for for IN cord-276978-xl4u7n6r 39 22 sequence sequence NN cord-276978-xl4u7n6r 39 23 determination determination NN cord-276978-xl4u7n6r 39 24 , , , cord-276978-xl4u7n6r 39 25 according accord VBG cord-276978-xl4u7n6r 39 26 to to IN cord-276978-xl4u7n6r 39 27 Applied Applied NNP cord-276978-xl4u7n6r 39 28 Biosystems Biosystems NNP cord-276978-xl4u7n6r 39 29 ' ' POS cord-276978-xl4u7n6r 39 30 instructions instruction NNS cord-276978-xl4u7n6r 39 31 . . . cord-276978-xl4u7n6r 40 1 4 4 LS cord-276978-xl4u7n6r 40 2 . . . cord-276978-xl4u7n6r 41 1 The the DT cord-276978-xl4u7n6r 41 2 sequence sequence NN cord-276978-xl4u7n6r 41 3 obtained obtain VBD cord-276978-xl4u7n6r 41 4 gives give VBZ cord-276978-xl4u7n6r 41 5 information information NN cord-276978-xl4u7n6r 41 6 on on IN cord-276978-xl4u7n6r 41 7 the the DT cord-276978-xl4u7n6r 41 8 3 3 CD cord-276978-xl4u7n6r 41 9 -end -end : cord-276978-xl4u7n6r 41 10 of of IN cord-276978-xl4u7n6r 41 11 the the DT cord-276978-xl4u7n6r 41 12 coronavirus coronavirus NN cord-276978-xl4u7n6r 41 13 genome genome NN cord-276978-xl4u7n6r 41 14 . . . cord-276978-xl4u7n6r 42 1 As as IN cord-276978-xl4u7n6r 42 2 s2 s2 NNP cord-276978-xl4u7n6r 42 3 m m NNP cord-276978-xl4u7n6r 42 4 is be VBZ cord-276978-xl4u7n6r 42 5 located locate VBN cord-276978-xl4u7n6r 42 6 about about IN cord-276978-xl4u7n6r 42 7 100 100 CD cord-276978-xl4u7n6r 42 8 - - SYM cord-276978-xl4u7n6r 42 9 150 150 CD cord-276978-xl4u7n6r 42 10 nucleotides nucleotide NNS cord-276978-xl4u7n6r 42 11 upstream upstream RB cord-276978-xl4u7n6r 42 12 of of IN cord-276978-xl4u7n6r 42 13 the the DT cord-276978-xl4u7n6r 42 14 poly(A poly(a JJ cord-276978-xl4u7n6r 42 15 ) ) -RRB- cord-276978-xl4u7n6r 42 16 tail tail NN cord-276978-xl4u7n6r 42 17 of of IN cord-276978-xl4u7n6r 42 18 the the DT cord-276978-xl4u7n6r 42 19 coronaviruses coronaviruse NNS cord-276978-xl4u7n6r 42 20 harboring harbor VBG cord-276978-xl4u7n6r 42 21 it -PRON- PRP cord-276978-xl4u7n6r 42 22 , , , cord-276978-xl4u7n6r 42 23 50 50 CD cord-276978-xl4u7n6r 42 24 - - SYM cord-276978-xl4u7n6r 42 25 100 100 CD cord-276978-xl4u7n6r 42 26 nucleotides nucleotide NNS cord-276978-xl4u7n6r 42 27 can can MD cord-276978-xl4u7n6r 42 28 be be VB cord-276978-xl4u7n6r 42 29 determined determine VBN cord-276978-xl4u7n6r 42 30 that that DT cord-276978-xl4u7n6r 42 31 way way NN cord-276978-xl4u7n6r 42 32 , , , cord-276978-xl4u7n6r 42 33 and and CC cord-276978-xl4u7n6r 42 34 two two CD cord-276978-xl4u7n6r 42 35 new new JJ cord-276978-xl4u7n6r 42 36 primers primer NNS cord-276978-xl4u7n6r 42 37 are be VBP cord-276978-xl4u7n6r 42 38 designed design VBN cord-276978-xl4u7n6r 42 39 , , , cord-276978-xl4u7n6r 42 40 which which WDT cord-276978-xl4u7n6r 42 41 can can MD cord-276978-xl4u7n6r 42 42 be be VB cord-276978-xl4u7n6r 42 43 partly partly RB cord-276978-xl4u7n6r 42 44 overlapping overlap VBG cord-276978-xl4u7n6r 42 45 , , , cord-276978-xl4u7n6r 42 46 for for IN cord-276978-xl4u7n6r 42 47 use use NN cord-276978-xl4u7n6r 42 48 in in IN cord-276978-xl4u7n6r 42 49 PCR PCR NNP cord-276978-xl4u7n6r 42 50 and and CC cord-276978-xl4u7n6r 42 51 sequencing sequencing NN cord-276978-xl4u7n6r 42 52 in in IN cord-276978-xl4u7n6r 42 53 the the DT cord-276978-xl4u7n6r 42 54 5 5 CD cord-276978-xl4u7n6r 42 55 -RACE -race NN cord-276978-xl4u7n6r 42 56 strategy strategy NN cord-276978-xl4u7n6r 42 57 ( ( -LRB- cord-276978-xl4u7n6r 42 58 see see VB cord-276978-xl4u7n6r 42 59 Note Note NNP cord-276978-xl4u7n6r 42 60 5 5 CD cord-276978-xl4u7n6r 42 61 ) ) -RRB- cord-276978-xl4u7n6r 42 62 . . . cord-276978-xl4u7n6r 43 1 A a DT cord-276978-xl4u7n6r 43 2 new new JJ cord-276978-xl4u7n6r 43 3 RT RT NNP cord-276978-xl4u7n6r 43 4 is be VBZ cord-276978-xl4u7n6r 43 5 performed perform VBN cord-276978-xl4u7n6r 43 6 , , , cord-276978-xl4u7n6r 43 7 with with IN cord-276978-xl4u7n6r 43 8 care care NN cord-276978-xl4u7n6r 43 9 taken take VBN cord-276978-xl4u7n6r 43 10 not not RB cord-276978-xl4u7n6r 43 11 to to TO cord-276978-xl4u7n6r 43 12 vortex vortex VB cord-276978-xl4u7n6r 43 13 samples sample NNS cord-276978-xl4u7n6r 43 14 , , , cord-276978-xl4u7n6r 43 15 mixing mix VBG cord-276978-xl4u7n6r 43 16 by by IN cord-276978-xl4u7n6r 43 17 gentle gentle JJ cord-276978-xl4u7n6r 43 18 pipetting pipetting NN cord-276978-xl4u7n6r 43 19 to to TO cord-276978-xl4u7n6r 43 20 avoid avoid VB cord-276978-xl4u7n6r 43 21 breakage breakage NN cord-276978-xl4u7n6r 43 22 of of IN cord-276978-xl4u7n6r 43 23 the the DT cord-276978-xl4u7n6r 43 24 genomic genomic JJ cord-276978-xl4u7n6r 43 25 RNA rna NN cord-276978-xl4u7n6r 43 26 molecule molecule NN cord-276978-xl4u7n6r 43 27 and and CC cord-276978-xl4u7n6r 43 28 achieve achieve VB cord-276978-xl4u7n6r 43 29 long long JJ cord-276978-xl4u7n6r 43 30 - - HYPH cord-276978-xl4u7n6r 43 31 range range NN cord-276978-xl4u7n6r 43 32 cDNA cdna NN cord-276978-xl4u7n6r 43 33 synthesis synthesis NN cord-276978-xl4u7n6r 43 34 , , , cord-276978-xl4u7n6r 43 35 to to TO cord-276978-xl4u7n6r 43 36 get get VB cord-276978-xl4u7n6r 43 37 long long JJ cord-276978-xl4u7n6r 43 38 sequence sequence NN cord-276978-xl4u7n6r 43 39 stretches stretch VBZ cord-276978-xl4u7n6r 43 40 in in IN cord-276978-xl4u7n6r 43 41 the the DT cord-276978-xl4u7n6r 43 42 5 5 CD cord-276978-xl4u7n6r 43 43 -RACE -race NN cord-276978-xl4u7n6r 43 44 procedure procedure NN cord-276978-xl4u7n6r 43 45 ( ( -LRB- cord-276978-xl4u7n6r 43 46 see see VB cord-276978-xl4u7n6r 43 47 Note Note NNP cord-276978-xl4u7n6r 43 48 6 6 CD cord-276978-xl4u7n6r 43 49 ) ) -RRB- cord-276978-xl4u7n6r 43 50 . . . cord-276978-xl4u7n6r 44 1 A a DT cord-276978-xl4u7n6r 44 2 10-l 10-l CD cord-276978-xl4u7n6r 44 3 RNA RNA NNP cord-276978-xl4u7n6r 44 4 extract extract NN cord-276978-xl4u7n6r 44 5 is be VBZ cord-276978-xl4u7n6r 44 6 added add VBN cord-276978-xl4u7n6r 44 7 to to IN cord-276978-xl4u7n6r 44 8 1 1 CD cord-276978-xl4u7n6r 44 9 l l NN cord-276978-xl4u7n6r 44 10 anchored anchor VBD cord-276978-xl4u7n6r 44 11 oligo(dT oligo(dt CD cord-276978-xl4u7n6r 44 12 ) ) -RRB- cord-276978-xl4u7n6r 44 13 20 20 CD cord-276978-xl4u7n6r 44 14 primer primer NN cord-276978-xl4u7n6r 44 15 ( ( -LRB- cord-276978-xl4u7n6r 44 16 2.5 2.5 CD cord-276978-xl4u7n6r 44 17 g g NN cord-276978-xl4u7n6r 44 18 / / SYM cord-276978-xl4u7n6r 44 19 l l NN cord-276978-xl4u7n6r 44 20 ) ) -RRB- cord-276978-xl4u7n6r 44 21 , , , cord-276978-xl4u7n6r 44 22 and and CC cord-276978-xl4u7n6r 44 23 incubated incubate VBN cord-276978-xl4u7n6r 44 24 for for IN cord-276978-xl4u7n6r 44 25 5 5 CD cord-276978-xl4u7n6r 44 26 min min NN cord-276978-xl4u7n6r 44 27 at at IN cord-276978-xl4u7n6r 44 28 65 65 CD cord-276978-xl4u7n6r 44 29 • • NN cord-276978-xl4u7n6r 44 30 C c NN cord-276978-xl4u7n6r 44 31 , , , cord-276978-xl4u7n6r 44 32 to to TO cord-276978-xl4u7n6r 44 33 get get VB cord-276978-xl4u7n6r 44 34 rid rid VBN cord-276978-xl4u7n6r 44 35 of of IN cord-276978-xl4u7n6r 44 36 RNA RNA NNP cord-276978-xl4u7n6r 44 37 secondary secondary JJ cord-276978-xl4u7n6r 44 38 structures structure NNS cord-276978-xl4u7n6r 44 39 . . . cord-276978-xl4u7n6r 45 1 The the DT cord-276978-xl4u7n6r 45 2 sample sample NN cord-276978-xl4u7n6r 45 3 is be VBZ cord-276978-xl4u7n6r 45 4 then then RB cord-276978-xl4u7n6r 45 5 rapidly rapidly RB cord-276978-xl4u7n6r 45 6 chilled chill VBN cord-276978-xl4u7n6r 45 7 on on IN cord-276978-xl4u7n6r 45 8 ice ice NN cord-276978-xl4u7n6r 45 9 , , , cord-276978-xl4u7n6r 45 10 for for IN cord-276978-xl4u7n6r 45 11 1 1 CD cord-276978-xl4u7n6r 45 12 min min NN cord-276978-xl4u7n6r 45 13 . . . cord-276978-xl4u7n6r 46 1 The the DT cord-276978-xl4u7n6r 46 2 sample sample NN cord-276978-xl4u7n6r 46 3 is be VBZ cord-276978-xl4u7n6r 46 4 then then RB cord-276978-xl4u7n6r 46 5 spun spin VBN cord-276978-xl4u7n6r 46 6 down down RP cord-276978-xl4u7n6r 46 7 , , , cord-276978-xl4u7n6r 46 8 and and CC cord-276978-xl4u7n6r 46 9 4 4 CD cord-276978-xl4u7n6r 46 10 l l NN cord-276978-xl4u7n6r 46 11 5X 5x CD cord-276978-xl4u7n6r 46 12 first first JJ cord-276978-xl4u7n6r 46 13 - - HYPH cord-276978-xl4u7n6r 46 14 strand strand NN cord-276978-xl4u7n6r 46 15 buffer buffer NN cord-276978-xl4u7n6r 46 16 , , , cord-276978-xl4u7n6r 46 17 1 1 CD cord-276978-xl4u7n6r 46 18 l l NN cord-276978-xl4u7n6r 46 19 10 10 CD cord-276978-xl4u7n6r 46 20 mM mM NNP cord-276978-xl4u7n6r 46 21 dNTP dntp NN cord-276978-xl4u7n6r 46 22 , , , cord-276978-xl4u7n6r 46 23 and and CC cord-276978-xl4u7n6r 46 24 1 1 CD cord-276978-xl4u7n6r 46 25 l l NN cord-276978-xl4u7n6r 46 26 100 100 CD cord-276978-xl4u7n6r 46 27 mM mM NNP cord-276978-xl4u7n6r 46 28 DTT DTT NNP cord-276978-xl4u7n6r 46 29 are be VBP cord-276978-xl4u7n6r 46 30 added add VBN cord-276978-xl4u7n6r 46 31 and and CC cord-276978-xl4u7n6r 46 32 mixed mix VBN cord-276978-xl4u7n6r 46 33 gently gently RB cord-276978-xl4u7n6r 46 34 by by IN cord-276978-xl4u7n6r 46 35 pipetting pipette VBG cord-276978-xl4u7n6r 46 36 up up RP cord-276978-xl4u7n6r 46 37 and and CC cord-276978-xl4u7n6r 46 38 down down RB cord-276978-xl4u7n6r 46 39 . . . cord-276978-xl4u7n6r 47 1 The the DT cord-276978-xl4u7n6r 47 2 samples sample NNS cord-276978-xl4u7n6r 47 3 are be VBP cord-276978-xl4u7n6r 47 4 then then RB cord-276978-xl4u7n6r 47 5 incubated incubate VBN cord-276978-xl4u7n6r 47 6 for for IN cord-276978-xl4u7n6r 47 7 1 1 CD cord-276978-xl4u7n6r 47 8 min min NN cord-276978-xl4u7n6r 47 9 at at IN cord-276978-xl4u7n6r 47 10 55 55 CD cord-276978-xl4u7n6r 48 1 • • NNP cord-276978-xl4u7n6r 48 2 C C NNP cord-276978-xl4u7n6r 48 3 , , , cord-276978-xl4u7n6r 48 4 and and CC cord-276978-xl4u7n6r 48 5 1 1 CD cord-276978-xl4u7n6r 48 6 l l NN cord-276978-xl4u7n6r 48 7 RNaseOUT rnaseout NN cord-276978-xl4u7n6r 48 8 ( ( -LRB- cord-276978-xl4u7n6r 48 9 40 40 CD cord-276978-xl4u7n6r 48 10 U U NNP cord-276978-xl4u7n6r 48 11 / / SYM cord-276978-xl4u7n6r 48 12 l l NN cord-276978-xl4u7n6r 48 13 ) ) -RRB- cord-276978-xl4u7n6r 48 14 and and CC cord-276978-xl4u7n6r 48 15 2 2 CD cord-276978-xl4u7n6r 48 16 l l NN cord-276978-xl4u7n6r 48 17 Superscript superscript NN cord-276978-xl4u7n6r 48 18 III III NNP cord-276978-xl4u7n6r 48 19 ( ( -LRB- cord-276978-xl4u7n6r 48 20 200 200 CD cord-276978-xl4u7n6r 48 21 U u NN cord-276978-xl4u7n6r 48 22 / / SYM cord-276978-xl4u7n6r 48 23 l l NN cord-276978-xl4u7n6r 48 24 ) ) -RRB- cord-276978-xl4u7n6r 48 25 are be VBP cord-276978-xl4u7n6r 48 26 added add VBN cord-276978-xl4u7n6r 48 27 to to IN cord-276978-xl4u7n6r 48 28 each each DT cord-276978-xl4u7n6r 48 29 sample sample NN cord-276978-xl4u7n6r 48 30 , , , cord-276978-xl4u7n6r 48 31 and and CC cord-276978-xl4u7n6r 48 32 the the DT cord-276978-xl4u7n6r 48 33 samples sample NNS cord-276978-xl4u7n6r 48 34 are be VBP cord-276978-xl4u7n6r 48 35 rapidly rapidly RB cord-276978-xl4u7n6r 48 36 put put VBN cord-276978-xl4u7n6r 48 37 back back RB cord-276978-xl4u7n6r 48 38 into into IN cord-276978-xl4u7n6r 48 39 the the DT cord-276978-xl4u7n6r 48 40 thermocycler thermocycler NN cord-276978-xl4u7n6r 48 41 used use VBN cord-276978-xl4u7n6r 48 42 for for IN cord-276978-xl4u7n6r 48 43 RT RT NNP cord-276978-xl4u7n6r 48 44 . . . cord-276978-xl4u7n6r 49 1 The the DT cord-276978-xl4u7n6r 49 2 RT RT NNP cord-276978-xl4u7n6r 49 3 is be VBZ cord-276978-xl4u7n6r 49 4 performed perform VBN cord-276978-xl4u7n6r 49 5 at at IN cord-276978-xl4u7n6r 49 6 55 55 CD cord-276978-xl4u7n6r 49 7 • • NN cord-276978-xl4u7n6r 49 8 C C NNP cord-276978-xl4u7n6r 49 9 , , , cord-276978-xl4u7n6r 49 10 for for IN cord-276978-xl4u7n6r 49 11 80 80 CD cord-276978-xl4u7n6r 49 12 min min NN cord-276978-xl4u7n6r 49 13 , , , cord-276978-xl4u7n6r 49 14 followed follow VBN cord-276978-xl4u7n6r 49 15 by by IN cord-276978-xl4u7n6r 49 16 enzyme enzyme NN cord-276978-xl4u7n6r 49 17 inactivation inactivation NN cord-276978-xl4u7n6r 49 18 at at IN cord-276978-xl4u7n6r 49 19 70 70 CD cord-276978-xl4u7n6r 50 1 • • NNP cord-276978-xl4u7n6r 50 2 C C NNP cord-276978-xl4u7n6r 50 3 and and CC cord-276978-xl4u7n6r 50 4 cooling cool VBG cord-276978-xl4u7n6r 50 5 at at IN cord-276978-xl4u7n6r 51 1 4 4 LS cord-276978-xl4u7n6r 51 2 • • NN cord-276978-xl4u7n6r 51 3 C C NNP cord-276978-xl4u7n6r 51 4 thereafter thereafter RB cord-276978-xl4u7n6r 51 5 ( ( -LRB- cord-276978-xl4u7n6r 51 6 see see VB cord-276978-xl4u7n6r 51 7 Note Note NNP cord-276978-xl4u7n6r 51 8 7 7 CD cord-276978-xl4u7n6r 51 9 ) ) -RRB- cord-276978-xl4u7n6r 51 10 . . . cord-276978-xl4u7n6r 52 1 2 2 LS cord-276978-xl4u7n6r 52 2 . . . cord-276978-xl4u7n6r 53 1 The the DT cord-276978-xl4u7n6r 53 2 samples sample NNS cord-276978-xl4u7n6r 53 3 from from IN cord-276978-xl4u7n6r 53 4 reverse reverse JJ cord-276978-xl4u7n6r 53 5 transcription transcription NN cord-276978-xl4u7n6r 53 6 are be VBP cord-276978-xl4u7n6r 53 7 centrifuged centrifuge VBN cord-276978-xl4u7n6r 53 8 for for IN cord-276978-xl4u7n6r 53 9 20 20 CD cord-276978-xl4u7n6r 53 10 sec sec NNS cord-276978-xl4u7n6r 53 11 at at IN cord-276978-xl4u7n6r 53 12 1538 1538 CD cord-276978-xl4u7n6r 53 13 × × NNP cord-276978-xl4u7n6r 53 14 g g NNP cord-276978-xl4u7n6r 53 15 to to TO cord-276978-xl4u7n6r 53 16 collect collect VB cord-276978-xl4u7n6r 53 17 all all DT cord-276978-xl4u7n6r 53 18 droplets droplet NNS cord-276978-xl4u7n6r 53 19 , , , cord-276978-xl4u7n6r 53 20 and and CC cord-276978-xl4u7n6r 53 21 incubated incubate VBN cord-276978-xl4u7n6r 53 22 at at IN cord-276978-xl4u7n6r 53 23 37 37 CD cord-276978-xl4u7n6r 53 24 • • NN cord-276978-xl4u7n6r 53 25 C c NN cord-276978-xl4u7n6r 53 26 in in IN cord-276978-xl4u7n6r 53 27 a a DT cord-276978-xl4u7n6r 53 28 thermocycler thermocycler NN cord-276978-xl4u7n6r 53 29 . . . cord-276978-xl4u7n6r 54 1 A a DT cord-276978-xl4u7n6r 54 2 1-l 1-l CD cord-276978-xl4u7n6r 54 3 RNase rnase NN cord-276978-xl4u7n6r 54 4 mix mix NN cord-276978-xl4u7n6r 54 5 is be VBZ cord-276978-xl4u7n6r 54 6 then then RB cord-276978-xl4u7n6r 54 7 added add VBN cord-276978-xl4u7n6r 54 8 to to IN cord-276978-xl4u7n6r 54 9 each each DT cord-276978-xl4u7n6r 54 10 sample sample NN cord-276978-xl4u7n6r 54 11 ( ( -LRB- cord-276978-xl4u7n6r 54 12 see see VB cord-276978-xl4u7n6r 54 13 Note note NN cord-276978-xl4u7n6r 54 14 8) 8) NN cord-276978-xl4u7n6r 54 15 and and CC cord-276978-xl4u7n6r 54 16 mixed mix VBN cord-276978-xl4u7n6r 54 17 gently gently RB cord-276978-xl4u7n6r 54 18 by by IN cord-276978-xl4u7n6r 54 19 pipetting pipette VBG cord-276978-xl4u7n6r 54 20 up up RP cord-276978-xl4u7n6r 54 21 and and CC cord-276978-xl4u7n6r 54 22 down down RB cord-276978-xl4u7n6r 54 23 , , , cord-276978-xl4u7n6r 54 24 and and CC cord-276978-xl4u7n6r 54 25 the the DT cord-276978-xl4u7n6r 54 26 samples sample NNS cord-276978-xl4u7n6r 54 27 are be VBP cord-276978-xl4u7n6r 54 28 put put VBN cord-276978-xl4u7n6r 54 29 back back RB cord-276978-xl4u7n6r 54 30 into into IN cord-276978-xl4u7n6r 54 31 the the DT cord-276978-xl4u7n6r 54 32 thermocycler thermocycler NN cord-276978-xl4u7n6r 54 33 for for IN cord-276978-xl4u7n6r 54 34 further further JJ cord-276978-xl4u7n6r 54 35 incubation incubation NN cord-276978-xl4u7n6r 54 36 for for IN cord-276978-xl4u7n6r 54 37 30 30 CD cord-276978-xl4u7n6r 54 38 min min NN cord-276978-xl4u7n6r 54 39 at at IN cord-276978-xl4u7n6r 54 40 37 37 CD cord-276978-xl4u7n6r 54 41 • • NN cord-276978-xl4u7n6r 54 42 C. c. NN cord-276978-xl4u7n6r 55 1 When when WRB cord-276978-xl4u7n6r 55 2 the the DT cord-276978-xl4u7n6r 55 3 incubation incubation NN cord-276978-xl4u7n6r 55 4 is be VBZ cord-276978-xl4u7n6r 55 5 finished finish VBN cord-276978-xl4u7n6r 55 6 , , , cord-276978-xl4u7n6r 55 7 the the DT cord-276978-xl4u7n6r 55 8 samples sample NNS cord-276978-xl4u7n6r 55 9 are be VBP cord-276978-xl4u7n6r 55 10 spun spin VBN cord-276978-xl4u7n6r 55 11 down down RP cord-276978-xl4u7n6r 55 12 and and CC cord-276978-xl4u7n6r 55 13 cooled cool VBN cord-276978-xl4u7n6r 55 14 . . . cord-276978-xl4u7n6r 56 1 3 3 LS cord-276978-xl4u7n6r 56 2 . . . cord-276978-xl4u7n6r 57 1 The the DT cord-276978-xl4u7n6r 57 2 newly newly RB cord-276978-xl4u7n6r 57 3 synthesized synthesize VBN cord-276978-xl4u7n6r 57 4 cDNA cdna NN cord-276978-xl4u7n6r 57 5 is be VBZ cord-276978-xl4u7n6r 57 6 purified purify VBN cord-276978-xl4u7n6r 57 7 using use VBG cord-276978-xl4u7n6r 57 8 the the DT cord-276978-xl4u7n6r 57 9 QIAquick QIAquick NNP cord-276978-xl4u7n6r 57 10 PCR PCR NNP cord-276978-xl4u7n6r 57 11 purification purification NN cord-276978-xl4u7n6r 57 12 kit kit NN cord-276978-xl4u7n6r 57 13 according accord VBG cord-276978-xl4u7n6r 57 14 to to IN cord-276978-xl4u7n6r 57 15 the the DT cord-276978-xl4u7n6r 57 16 manufacturer manufacturer NN cord-276978-xl4u7n6r 57 17 's 's POS cord-276978-xl4u7n6r 57 18 instructions instruction NNS cord-276978-xl4u7n6r 57 19 , , , cord-276978-xl4u7n6r 57 20 with with IN cord-276978-xl4u7n6r 57 21 the the DT cord-276978-xl4u7n6r 57 22 following following JJ cord-276978-xl4u7n6r 57 23 modifications modification NNS cord-276978-xl4u7n6r 57 24 : : : cord-276978-xl4u7n6r 57 25 all all DT cord-276978-xl4u7n6r 57 26 mixing mix VBG cord-276978-xl4u7n6r 57 27 steps step NNS cord-276978-xl4u7n6r 57 28 are be VBP cord-276978-xl4u7n6r 57 29 performed perform VBN cord-276978-xl4u7n6r 57 30 gently gently RB cord-276978-xl4u7n6r 57 31 , , , cord-276978-xl4u7n6r 57 32 and and CC cord-276978-xl4u7n6r 57 33 the the DT cord-276978-xl4u7n6r 57 34 sample sample NN cord-276978-xl4u7n6r 57 35 is be VBZ cord-276978-xl4u7n6r 57 36 eluted elute VBN cord-276978-xl4u7n6r 57 37 in in IN cord-276978-xl4u7n6r 57 38 30 30 CD cord-276978-xl4u7n6r 57 39 l l NN cord-276978-xl4u7n6r 57 40 RNase RNase NNP cord-276978-xl4u7n6r 57 41 / / SYM cord-276978-xl4u7n6r 57 42 DNase DNase NNP cord-276978-xl4u7n6r 57 43 - - HYPH cord-276978-xl4u7n6r 57 44 free free JJ cord-276978-xl4u7n6r 57 45 water water NN cord-276978-xl4u7n6r 57 46 prewarmed prewarme VBN cord-276978-xl4u7n6r 57 47 at at IN cord-276978-xl4u7n6r 57 48 65 65 CD cord-276978-xl4u7n6r 58 1 • • NNP cord-276978-xl4u7n6r 58 2 C. C. NNP cord-276978-xl4u7n6r 59 1 The the DT cord-276978-xl4u7n6r 59 2 cDNA cdna NN cord-276978-xl4u7n6r 59 3 amount amount NN cord-276978-xl4u7n6r 59 4 is be VBZ cord-276978-xl4u7n6r 59 5 measured measure VBN cord-276978-xl4u7n6r 59 6 spectrophotometrically spectrophotometrically RB cord-276978-xl4u7n6r 59 7 on on IN cord-276978-xl4u7n6r 59 8 a a DT cord-276978-xl4u7n6r 59 9 NanoDrop NanoDrop NNP cord-276978-xl4u7n6r 59 10 . . . cord-276978-xl4u7n6r 60 1 4 4 LS cord-276978-xl4u7n6r 60 2 . . . cord-276978-xl4u7n6r 61 1 Cytosine cytosine NN cord-276978-xl4u7n6r 61 2 residues residue NNS cord-276978-xl4u7n6r 61 3 are be VBP cord-276978-xl4u7n6r 61 4 added add VBN cord-276978-xl4u7n6r 61 5 to to IN cord-276978-xl4u7n6r 61 6 the the DT cord-276978-xl4u7n6r 61 7 3'-ends 3'-ends CD cord-276978-xl4u7n6r 61 8 of of IN cord-276978-xl4u7n6r 61 9 purified purify VBN cord-276978-xl4u7n6r 61 10 cDNA cdna NN cord-276978-xl4u7n6r 61 11 , , , cord-276978-xl4u7n6r 61 12 in in IN cord-276978-xl4u7n6r 61 13 order order NN cord-276978-xl4u7n6r 61 14 to to TO cord-276978-xl4u7n6r 61 15 make make VB cord-276978-xl4u7n6r 61 16 a a DT cord-276978-xl4u7n6r 61 17 homopolymeric homopolymeric NN cord-276978-xl4u7n6r 61 18 ( ( -LRB- cord-276978-xl4u7n6r 61 19 C c NN cord-276978-xl4u7n6r 61 20 ) ) -RRB- cord-276978-xl4u7n6r 61 21 tail tail NN cord-276978-xl4u7n6r 61 22 to to TO cord-276978-xl4u7n6r 61 23 serve serve VB cord-276978-xl4u7n6r 61 24 as as IN cord-276978-xl4u7n6r 61 25 a a DT cord-276978-xl4u7n6r 61 26 handle handle NN cord-276978-xl4u7n6r 61 27 for for IN cord-276978-xl4u7n6r 61 28 semispecific semispecific NN cord-276978-xl4u7n6r 61 29 amplification amplification NN cord-276978-xl4u7n6r 61 30 with with IN cord-276978-xl4u7n6r 61 31 a a DT cord-276978-xl4u7n6r 61 32 specially specially RB cord-276978-xl4u7n6r 61 33 designed design VBN cord-276978-xl4u7n6r 61 34 anchor anchor NN cord-276978-xl4u7n6r 61 35 primer primer NN cord-276978-xl4u7n6r 61 36 . . . cord-276978-xl4u7n6r 62 1 The the DT cord-276978-xl4u7n6r 62 2 tailing tailing NN cord-276978-xl4u7n6r 62 3 is be VBZ cord-276978-xl4u7n6r 62 4 performed perform VBN cord-276978-xl4u7n6r 62 5 as as IN cord-276978-xl4u7n6r 62 6 follows follow VBZ cord-276978-xl4u7n6r 62 7 : : : cord-276978-xl4u7n6r 62 8 10 10 CD cord-276978-xl4u7n6r 62 9 l l NN cord-276978-xl4u7n6r 62 10 of of IN cord-276978-xl4u7n6r 62 11 the the DT cord-276978-xl4u7n6r 62 12 purified purify VBN cord-276978-xl4u7n6r 62 13 cDNA cdna NN cord-276978-xl4u7n6r 62 14 is be VBZ cord-276978-xl4u7n6r 62 15 added add VBN cord-276978-xl4u7n6r 62 16 to to IN cord-276978-xl4u7n6r 62 17 6.5 6.5 CD cord-276978-xl4u7n6r 62 18 l l NN cord-276978-xl4u7n6r 62 19 RNase RNase NNP cord-276978-xl4u7n6r 62 20 / / SYM cord-276978-xl4u7n6r 62 21 DNase DNase NNP cord-276978-xl4u7n6r 62 22 - - HYPH cord-276978-xl4u7n6r 62 23 free free JJ cord-276978-xl4u7n6r 62 24 water water NN cord-276978-xl4u7n6r 62 25 , , , cord-276978-xl4u7n6r 62 26 5 5 CD cord-276978-xl4u7n6r 62 27 l l NN cord-276978-xl4u7n6r 62 28 5X 5x CD cord-276978-xl4u7n6r 62 29 tailing tailing NN cord-276978-xl4u7n6r 62 30 buffer buffer NN cord-276978-xl4u7n6r 62 31 , , , cord-276978-xl4u7n6r 62 32 and and CC cord-276978-xl4u7n6r 62 33 2.5 2.5 CD cord-276978-xl4u7n6r 62 34 l l NN cord-276978-xl4u7n6r 62 35 2 2 CD cord-276978-xl4u7n6r 62 36 mM mm NN cord-276978-xl4u7n6r 62 37 dCTP dctp NN cord-276978-xl4u7n6r 62 38 . . . cord-276978-xl4u7n6r 63 1 In in IN cord-276978-xl4u7n6r 63 2 order order NN cord-276978-xl4u7n6r 63 3 to to TO cord-276978-xl4u7n6r 63 4 avoid avoid VB cord-276978-xl4u7n6r 63 5 secondary secondary JJ cord-276978-xl4u7n6r 63 6 structure structure NN cord-276978-xl4u7n6r 63 7 in in IN cord-276978-xl4u7n6r 63 8 the the DT cord-276978-xl4u7n6r 63 9 cDNA cdna NN cord-276978-xl4u7n6r 63 10 that that WDT cord-276978-xl4u7n6r 63 11 might may MD cord-276978-xl4u7n6r 63 12 impair impair VB cord-276978-xl4u7n6r 63 13 the the DT cord-276978-xl4u7n6r 63 14 tailing tailing NN cord-276978-xl4u7n6r 63 15 , , , cord-276978-xl4u7n6r 63 16 a a DT cord-276978-xl4u7n6r 63 17 short short JJ cord-276978-xl4u7n6r 63 18 denaturation denaturation NN cord-276978-xl4u7n6r 63 19 step step NN cord-276978-xl4u7n6r 63 20 is be VBZ cord-276978-xl4u7n6r 63 21 performed perform VBN cord-276978-xl4u7n6r 63 22 at at IN cord-276978-xl4u7n6r 63 23 94 94 CD cord-276978-xl4u7n6r 64 1 • • NNP cord-276978-xl4u7n6r 64 2 C C NNP cord-276978-xl4u7n6r 64 3 for for IN cord-276978-xl4u7n6r 64 4 3 3 CD cord-276978-xl4u7n6r 64 5 min min NN cord-276978-xl4u7n6r 64 6 . . . cord-276978-xl4u7n6r 65 1 The the DT cord-276978-xl4u7n6r 65 2 sample sample NN cord-276978-xl4u7n6r 65 3 is be VBZ cord-276978-xl4u7n6r 65 4 then then RB cord-276978-xl4u7n6r 65 5 immediately immediately RB cord-276978-xl4u7n6r 65 6 chilled chill VBN cord-276978-xl4u7n6r 65 7 on on IN cord-276978-xl4u7n6r 65 8 ice ice NN cord-276978-xl4u7n6r 65 9 and and CC cord-276978-xl4u7n6r 65 10 spun spin VBD cord-276978-xl4u7n6r 65 11 down down RP cord-276978-xl4u7n6r 65 12 . . . cord-276978-xl4u7n6r 66 1 One one CD cord-276978-xl4u7n6r 66 2 l l NN cord-276978-xl4u7n6r 66 3 TdT tdt NN cord-276978-xl4u7n6r 66 4 ( ( -LRB- cord-276978-xl4u7n6r 66 5 15 15 CD cord-276978-xl4u7n6r 66 6 U U NNP cord-276978-xl4u7n6r 66 7 / / SYM cord-276978-xl4u7n6r 66 8 l l NN cord-276978-xl4u7n6r 66 9 ) ) -RRB- cord-276978-xl4u7n6r 66 10 is be VBZ cord-276978-xl4u7n6r 66 11 then then RB cord-276978-xl4u7n6r 66 12 added add VBN cord-276978-xl4u7n6r 66 13 , , , cord-276978-xl4u7n6r 66 14 and and CC cord-276978-xl4u7n6r 66 15 the the DT cord-276978-xl4u7n6r 66 16 tailing tail VBG cord-276978-xl4u7n6r 66 17 reaction reaction NN cord-276978-xl4u7n6r 66 18 is be VBZ cord-276978-xl4u7n6r 66 19 performed perform VBN cord-276978-xl4u7n6r 66 20 at at IN cord-276978-xl4u7n6r 66 21 37 37 CD cord-276978-xl4u7n6r 66 22 • • NN cord-276978-xl4u7n6r 66 23 C C NNP cord-276978-xl4u7n6r 66 24 for for IN cord-276978-xl4u7n6r 66 25 10 10 CD cord-276978-xl4u7n6r 66 26 min min NN cord-276978-xl4u7n6r 66 27 , , , cord-276978-xl4u7n6r 66 28 followed follow VBN cord-276978-xl4u7n6r 66 29 by by IN cord-276978-xl4u7n6r 66 30 an an DT cord-276978-xl4u7n6r 66 31 enzyme enzyme NN cord-276978-xl4u7n6r 66 32 inactivation inactivation NN cord-276978-xl4u7n6r 66 33 step step NN cord-276978-xl4u7n6r 66 34 at at IN cord-276978-xl4u7n6r 66 35 65 65 CD cord-276978-xl4u7n6r 66 36 • • NN cord-276978-xl4u7n6r 66 37 C c NN cord-276978-xl4u7n6r 66 38 for for IN cord-276978-xl4u7n6r 66 39 10 10 CD cord-276978-xl4u7n6r 66 40 min min NN cord-276978-xl4u7n6r 66 41 . . . cord-276978-xl4u7n6r 67 1 The the DT cord-276978-xl4u7n6r 67 2 sample sample NN cord-276978-xl4u7n6r 67 3 is be VBZ cord-276978-xl4u7n6r 67 4 then then RB cord-276978-xl4u7n6r 67 5 spun spin VBN cord-276978-xl4u7n6r 67 6 down down RP cord-276978-xl4u7n6r 67 7 and and CC cord-276978-xl4u7n6r 67 8 cooled cool VBD cord-276978-xl4u7n6r 67 9 on on IN cord-276978-xl4u7n6r 67 10 ice ice NN cord-276978-xl4u7n6r 67 11 . . . cord-276978-xl4u7n6r 68 1 5 5 LS cord-276978-xl4u7n6r 68 2 . . . cord-276978-xl4u7n6r 69 1 The the DT cord-276978-xl4u7n6r 69 2 5 5 CD cord-276978-xl4u7n6r 69 3 -RACE -race NN cord-276978-xl4u7n6r 69 4 PCR PCR NNP cord-276978-xl4u7n6r 69 5 is be VBZ cord-276978-xl4u7n6r 69 6 performed perform VBN cord-276978-xl4u7n6r 69 7 as as IN cord-276978-xl4u7n6r 69 8 follows follow VBZ cord-276978-xl4u7n6r 69 9 ( ( -LRB- cord-276978-xl4u7n6r 69 10 see see VB cord-276978-xl4u7n6r 69 11 Note Note NNP cord-276978-xl4u7n6r 69 12 9 9 CD cord-276978-xl4u7n6r 69 13 ) ) -RRB- cord-276978-xl4u7n6r 69 14 : : : cord-276978-xl4u7n6r 69 15 5 5 CD cord-276978-xl4u7n6r 69 16 l l NN cord-276978-xl4u7n6r 69 17 tailed tailed JJ cord-276978-xl4u7n6r 69 18 sample sample NN cord-276978-xl4u7n6r 69 19 is be VBZ cord-276978-xl4u7n6r 69 20 added add VBN cord-276978-xl4u7n6r 69 21 to to IN cord-276978-xl4u7n6r 69 22 45 45 CD cord-276978-xl4u7n6r 69 23 l l NN cord-276978-xl4u7n6r 69 24 PCR PCR NNP cord-276978-xl4u7n6r 69 25 mix mix NN cord-276978-xl4u7n6r 69 26 consisting consist VBG cord-276978-xl4u7n6r 69 27 of of IN cord-276978-xl4u7n6r 69 28 34.5 34.5 CD cord-276978-xl4u7n6r 69 29 l l NN cord-276978-xl4u7n6r 69 30 RNase RNase NNP cord-276978-xl4u7n6r 69 31 / / SYM cord-276978-xl4u7n6r 69 32 DNase DNase NNP cord-276978-xl4u7n6r 69 33 - - HYPH cord-276978-xl4u7n6r 69 34 free free JJ cord-276978-xl4u7n6r 69 35 water water NN cord-276978-xl4u7n6r 69 36 , , , cord-276978-xl4u7n6r 69 37 5 5 CD cord-276978-xl4u7n6r 69 38 l l NN cord-276978-xl4u7n6r 69 39 10X 10x CD cord-276978-xl4u7n6r 69 40 BD BD NNP cord-276978-xl4u7n6r 69 41 Advantage Advantage NNP cord-276978-xl4u7n6r 69 42 2 2 CD cord-276978-xl4u7n6r 69 43 PCR PCR NNP cord-276978-xl4u7n6r 69 44 buffer buffer NN cord-276978-xl4u7n6r 69 45 , , , cord-276978-xl4u7n6r 69 46 1 1 CD cord-276978-xl4u7n6r 69 47 l l NN cord-276978-xl4u7n6r 69 48 dNTP dNTP NNP cord-276978-xl4u7n6r 69 49 ( ( -LRB- cord-276978-xl4u7n6r 69 50 10 10 CD cord-276978-xl4u7n6r 69 51 mM mm CD cord-276978-xl4u7n6r 69 52 ) ) -RRB- cord-276978-xl4u7n6r 69 53 , , , cord-276978-xl4u7n6r 69 54 1 1 CD cord-276978-xl4u7n6r 69 55 l l NN cord-276978-xl4u7n6r 69 56 coronavirus coronavirus NN cord-276978-xl4u7n6r 69 57 - - HYPH cord-276978-xl4u7n6r 69 58 specific specific JJ cord-276978-xl4u7n6r 69 59 reverse reverse NN cord-276978-xl4u7n6r 69 60 primer primer NN cord-276978-xl4u7n6r 69 61 ( ( -LRB- cord-276978-xl4u7n6r 69 62 25 25 CD cord-276978-xl4u7n6r 69 63 M M NNP cord-276978-xl4u7n6r 69 64 ) ) -RRB- cord-276978-xl4u7n6r 69 65 , , , cord-276978-xl4u7n6r 69 66 2.5 2.5 CD cord-276978-xl4u7n6r 69 67 l l NN cord-276978-xl4u7n6r 69 68 abridged abridge VBN cord-276978-xl4u7n6r 69 69 anchor anchor NN cord-276978-xl4u7n6r 69 70 primer primer NN cord-276978-xl4u7n6r 69 71 ( ( -LRB- cord-276978-xl4u7n6r 69 72 10 10 CD cord-276978-xl4u7n6r 69 73 M M NNP cord-276978-xl4u7n6r 69 74 ) ) -RRB- cord-276978-xl4u7n6r 69 75 , , , cord-276978-xl4u7n6r 69 76 and and CC cord-276978-xl4u7n6r 69 77 1 1 CD cord-276978-xl4u7n6r 69 78 l l NN cord-276978-xl4u7n6r 69 79 BD BD NNP cord-276978-xl4u7n6r 69 80 Advantage Advantage NNP cord-276978-xl4u7n6r 69 81 polymerase polymerase NN cord-276978-xl4u7n6r 69 82 mix mix NN cord-276978-xl4u7n6r 69 83 . . . cord-276978-xl4u7n6r 70 1 The the DT cord-276978-xl4u7n6r 70 2 cycling cycling NN cord-276978-xl4u7n6r 70 3 conditions condition NNS cord-276978-xl4u7n6r 70 4 include include VBP cord-276978-xl4u7n6r 70 5 an an DT cord-276978-xl4u7n6r 70 6 initial initial JJ cord-276978-xl4u7n6r 70 7 enzymeactivation enzymeactivation NN cord-276978-xl4u7n6r 70 8 step step NN cord-276978-xl4u7n6r 70 9 at at IN cord-276978-xl4u7n6r 70 10 95 95 CD cord-276978-xl4u7n6r 71 1 • • NNP cord-276978-xl4u7n6r 72 1 C C NNP cord-276978-xl4u7n6r 72 2 for for IN cord-276978-xl4u7n6r 72 3 1 1 CD cord-276978-xl4u7n6r 72 4 min min NN cord-276978-xl4u7n6r 72 5 , , , cord-276978-xl4u7n6r 72 6 followed follow VBN cord-276978-xl4u7n6r 72 7 by by IN cord-276978-xl4u7n6r 72 8 35 35 CD cord-276978-xl4u7n6r 72 9 cycles cycle NNS cord-276978-xl4u7n6r 72 10 of of IN cord-276978-xl4u7n6r 72 11 94 94 CD cord-276978-xl4u7n6r 73 1 • • NNP cord-276978-xl4u7n6r 73 2 C C NNP cord-276978-xl4u7n6r 73 3 for for IN cord-276978-xl4u7n6r 73 4 30 30 CD cord-276978-xl4u7n6r 73 5 sec sec NNP cord-276978-xl4u7n6r 73 6 , , , cord-276978-xl4u7n6r 74 1 55 55 CD cord-276978-xl4u7n6r 74 2 • • NN cord-276978-xl4u7n6r 74 3 C c NN cord-276978-xl4u7n6r 74 4 for for IN cord-276978-xl4u7n6r 74 5 20 20 CD cord-276978-xl4u7n6r 74 6 sec sec NNP cord-276978-xl4u7n6r 74 7 , , , cord-276978-xl4u7n6r 74 8 and and CC cord-276978-xl4u7n6r 74 9 68 68 CD cord-276978-xl4u7n6r 75 1 • • NNP cord-276978-xl4u7n6r 76 1 C C NNP cord-276978-xl4u7n6r 76 2 for for IN cord-276978-xl4u7n6r 76 3 7 7 CD cord-276978-xl4u7n6r 76 4 min min NN cord-276978-xl4u7n6r 76 5 ( ( -LRB- cord-276978-xl4u7n6r 76 6 see see VB cord-276978-xl4u7n6r 77 1 Note note VB cord-276978-xl4u7n6r 77 2 10 10 CD cord-276978-xl4u7n6r 77 3 ) ) -RRB- cord-276978-xl4u7n6r 77 4 . . . cord-276978-xl4u7n6r 78 1 The the DT cord-276978-xl4u7n6r 78 2 cycling cycling NN cord-276978-xl4u7n6r 78 3 is be VBZ cord-276978-xl4u7n6r 78 4 followed follow VBN cord-276978-xl4u7n6r 78 5 by by IN cord-276978-xl4u7n6r 78 6 a a DT cord-276978-xl4u7n6r 78 7 step step NN cord-276978-xl4u7n6r 78 8 at at IN cord-276978-xl4u7n6r 78 9 68 68 CD cord-276978-xl4u7n6r 79 1 • • NNP cord-276978-xl4u7n6r 79 2 C C NNP cord-276978-xl4u7n6r 79 3 for for IN cord-276978-xl4u7n6r 79 4 7 7 CD cord-276978-xl4u7n6r 79 5 min min NN cord-276978-xl4u7n6r 79 6 and and CC cord-276978-xl4u7n6r 79 7 cooling cool VBG cord-276978-xl4u7n6r 79 8 to to IN cord-276978-xl4u7n6r 79 9 4 4 CD cord-276978-xl4u7n6r 79 10 • • NN cord-276978-xl4u7n6r 79 11 C c NN cord-276978-xl4u7n6r 79 12 thereafter thereafter RB cord-276978-xl4u7n6r 79 13 . . . cord-276978-xl4u7n6r 80 1 6 6 LS cord-276978-xl4u7n6r 80 2 . . . cord-276978-xl4u7n6r 81 1 Prior prior RB cord-276978-xl4u7n6r 81 2 to to IN cord-276978-xl4u7n6r 81 3 sequencing sequencing NN cord-276978-xl4u7n6r 81 4 reaction reaction NN cord-276978-xl4u7n6r 81 5 , , , cord-276978-xl4u7n6r 81 6 the the DT cord-276978-xl4u7n6r 81 7 PCR PCR NNP cord-276978-xl4u7n6r 81 8 product product NN cord-276978-xl4u7n6r 81 9 , , , cord-276978-xl4u7n6r 81 10 appearing appear VBG cord-276978-xl4u7n6r 81 11 as as IN cord-276978-xl4u7n6r 81 12 a a DT cord-276978-xl4u7n6r 81 13 weak weak JJ cord-276978-xl4u7n6r 81 14 smear smear NN cord-276978-xl4u7n6r 81 15 on on IN cord-276978-xl4u7n6r 81 16 a a DT cord-276978-xl4u7n6r 81 17 1 1 CD cord-276978-xl4u7n6r 81 18 % % NN cord-276978-xl4u7n6r 81 19 agarose agarose NN cord-276978-xl4u7n6r 81 20 gel gel NN cord-276978-xl4u7n6r 81 21 electrophoresis electrophoresis NN cord-276978-xl4u7n6r 81 22 , , , cord-276978-xl4u7n6r 81 23 is be VBZ cord-276978-xl4u7n6r 81 24 purified purify VBN cord-276978-xl4u7n6r 81 25 directly directly RB cord-276978-xl4u7n6r 81 26 using use VBG cord-276978-xl4u7n6r 81 27 the the DT cord-276978-xl4u7n6r 81 28 QIAquick QIAquick NNP cord-276978-xl4u7n6r 81 29 PCR PCR NNP cord-276978-xl4u7n6r 81 30 purification purification NN cord-276978-xl4u7n6r 81 31 kit kit NN cord-276978-xl4u7n6r 81 32 according accord VBG cord-276978-xl4u7n6r 81 33 to to IN cord-276978-xl4u7n6r 81 34 the the DT cord-276978-xl4u7n6r 81 35 manufacturer manufacturer NN cord-276978-xl4u7n6r 81 36 's 's POS cord-276978-xl4u7n6r 81 37 instructions instruction NNS cord-276978-xl4u7n6r 81 38 , , , cord-276978-xl4u7n6r 81 39 with with IN cord-276978-xl4u7n6r 81 40 a a DT cord-276978-xl4u7n6r 81 41 final final JJ cord-276978-xl4u7n6r 81 42 elution elution NN cord-276978-xl4u7n6r 81 43 volume volume NN cord-276978-xl4u7n6r 81 44 of of IN cord-276978-xl4u7n6r 81 45 30 30 CD cord-276978-xl4u7n6r 81 46 l l NN cord-276978-xl4u7n6r 81 47 ( ( -LRB- cord-276978-xl4u7n6r 81 48 see see VB cord-276978-xl4u7n6r 81 49 Note Note NNP cord-276978-xl4u7n6r 81 50 11 11 CD cord-276978-xl4u7n6r 81 51 ) ) -RRB- cord-276978-xl4u7n6r 81 52 . . . cord-276978-xl4u7n6r 82 1 Cycle cycle NN cord-276978-xl4u7n6r 82 2 sequencing sequencing NN cord-276978-xl4u7n6r 82 3 is be VBZ cord-276978-xl4u7n6r 82 4 performed perform VBN cord-276978-xl4u7n6r 82 5 using use VBG cord-276978-xl4u7n6r 82 6 BigDye BigDye NNP cord-276978-xl4u7n6r 82 7 Terminator Terminator NNP cord-276978-xl4u7n6r 82 8 version version NN cord-276978-xl4u7n6r 82 9 3.1 3.1 CD cord-276978-xl4u7n6r 82 10 , , , cord-276978-xl4u7n6r 82 11 for for IN cord-276978-xl4u7n6r 82 12 long long JJ cord-276978-xl4u7n6r 82 13 PCR PCR NNP cord-276978-xl4u7n6r 82 14 product product NN cord-276978-xl4u7n6r 82 15 sequencing sequencing NN cord-276978-xl4u7n6r 82 16 , , , cord-276978-xl4u7n6r 82 17 with with IN cord-276978-xl4u7n6r 82 18 the the DT cord-276978-xl4u7n6r 82 19 following follow VBG cord-276978-xl4u7n6r 82 20 reagents reagent NNS cord-276978-xl4u7n6r 82 21 : : : cord-276978-xl4u7n6r 82 22 4 4 CD cord-276978-xl4u7n6r 82 23 l l NNP cord-276978-xl4u7n6r 82 24 BigDye BigDye NNP cord-276978-xl4u7n6r 82 25 Terminator Terminator NNP cord-276978-xl4u7n6r 82 26 mix mix NN cord-276978-xl4u7n6r 82 27 , , , cord-276978-xl4u7n6r 82 28 1.3 1.3 CD cord-276978-xl4u7n6r 82 29 l l NN cord-276978-xl4u7n6r 82 30 coronavirus coronavirus NN cord-276978-xl4u7n6r 82 31 - - HYPH cord-276978-xl4u7n6r 82 32 specific specific JJ cord-276978-xl4u7n6r 82 33 reverse reverse NN cord-276978-xl4u7n6r 82 34 primer primer NN cord-276978-xl4u7n6r 82 35 2 2 CD cord-276978-xl4u7n6r 82 36 ( ( -LRB- cord-276978-xl4u7n6r 82 37 2.5 2.5 CD cord-276978-xl4u7n6r 82 38 M M NNP cord-276978-xl4u7n6r 82 39 ) ) -RRB- cord-276978-xl4u7n6r 82 40 , , , cord-276978-xl4u7n6r 82 41 and and CC cord-276978-xl4u7n6r 82 42 4.7 4.7 CD cord-276978-xl4u7n6r 82 43 l l NN cord-276978-xl4u7n6r 82 44 PCR PCR NNP cord-276978-xl4u7n6r 82 45 product product NN cord-276978-xl4u7n6r 82 46 . . . cord-276978-xl4u7n6r 83 1 The the DT cord-276978-xl4u7n6r 83 2 cycle cycle NN cord-276978-xl4u7n6r 83 3 sequencing sequencing NN cord-276978-xl4u7n6r 83 4 program program NN cord-276978-xl4u7n6r 83 5 consists consist VBZ cord-276978-xl4u7n6r 83 6 of of IN cord-276978-xl4u7n6r 83 7 an an DT cord-276978-xl4u7n6r 83 8 initial initial JJ cord-276978-xl4u7n6r 83 9 step step NN cord-276978-xl4u7n6r 83 10 at at IN cord-276978-xl4u7n6r 83 11 96 96 CD cord-276978-xl4u7n6r 84 1 • • NNP cord-276978-xl4u7n6r 85 1 C C NNP cord-276978-xl4u7n6r 85 2 for for IN cord-276978-xl4u7n6r 85 3 1 1 CD cord-276978-xl4u7n6r 85 4 min min NN cord-276978-xl4u7n6r 85 5 , , , cord-276978-xl4u7n6r 85 6 followed follow VBN cord-276978-xl4u7n6r 85 7 by by IN cord-276978-xl4u7n6r 85 8 25 25 CD cord-276978-xl4u7n6r 85 9 cycles cycle NNS cord-276978-xl4u7n6r 85 10 of of IN cord-276978-xl4u7n6r 85 11 96 96 CD cord-276978-xl4u7n6r 85 12 • • NN cord-276978-xl4u7n6r 85 13 C C NNP cord-276978-xl4u7n6r 85 14 for for IN cord-276978-xl4u7n6r 85 15 10 10 CD cord-276978-xl4u7n6r 85 16 sec sec NNS cord-276978-xl4u7n6r 85 17 , , , cord-276978-xl4u7n6r 86 1 50 50 CD cord-276978-xl4u7n6r 86 2 • • NN cord-276978-xl4u7n6r 86 3 C c NN cord-276978-xl4u7n6r 86 4 for for IN cord-276978-xl4u7n6r 86 5 5 5 CD cord-276978-xl4u7n6r 86 6 sec sec NNP cord-276978-xl4u7n6r 86 7 , , , cord-276978-xl4u7n6r 86 8 and and CC cord-276978-xl4u7n6r 86 9 60 60 CD cord-276978-xl4u7n6r 87 1 • • NNP cord-276978-xl4u7n6r 88 1 C C NNP cord-276978-xl4u7n6r 88 2 for for IN cord-276978-xl4u7n6r 88 3 4 4 CD cord-276978-xl4u7n6r 88 4 min min NN cord-276978-xl4u7n6r 88 5 , , , cord-276978-xl4u7n6r 88 6 followed follow VBN cord-276978-xl4u7n6r 88 7 by by IN cord-276978-xl4u7n6r 88 8 cooling cool VBG cord-276978-xl4u7n6r 88 9 at at IN cord-276978-xl4u7n6r 88 10 4 4 CD cord-276978-xl4u7n6r 88 11 • • NNP cord-276978-xl4u7n6r 88 12 C. C. NNP cord-276978-xl4u7n6r 88 13 7 7 CD cord-276978-xl4u7n6r 88 14 . . . cord-276978-xl4u7n6r 89 1 The the DT cord-276978-xl4u7n6r 89 2 cycle cycle NN cord-276978-xl4u7n6r 89 3 sequencing sequencing NN cord-276978-xl4u7n6r 89 4 products product NNS cord-276978-xl4u7n6r 89 5 are be VBP cord-276978-xl4u7n6r 89 6 purified purify VBN cord-276978-xl4u7n6r 89 7 from from IN cord-276978-xl4u7n6r 89 8 unincorporated unincorporated JJ cord-276978-xl4u7n6r 89 9 labeled label VBN cord-276978-xl4u7n6r 89 10 dideoxynucleotides dideoxynucleotide NNS cord-276978-xl4u7n6r 89 11 and and CC cord-276978-xl4u7n6r 89 12 separated separate VBN cord-276978-xl4u7n6r 89 13 by by IN cord-276978-xl4u7n6r 89 14 capillary capillary JJ cord-276978-xl4u7n6r 89 15 electrophoresis electrophoresis NN cord-276978-xl4u7n6r 89 16 on on IN cord-276978-xl4u7n6r 89 17 a a DT cord-276978-xl4u7n6r 89 18 3130xl 3130xl JJ cord-276978-xl4u7n6r 89 19 Genetic Genetic NNP cord-276978-xl4u7n6r 89 20 Analyser analyser NN cord-276978-xl4u7n6r 89 21 for for IN cord-276978-xl4u7n6r 89 22 sequence sequence NN cord-276978-xl4u7n6r 89 23 determination determination NN cord-276978-xl4u7n6r 89 24 , , , cord-276978-xl4u7n6r 89 25 according accord VBG cord-276978-xl4u7n6r 89 26 to to IN cord-276978-xl4u7n6r 89 27 Applied Applied NNP cord-276978-xl4u7n6r 89 28 Biosystems Biosystems NNP cord-276978-xl4u7n6r 89 29 ' ' POS cord-276978-xl4u7n6r 89 30 instructions instruction NNS cord-276978-xl4u7n6r 89 31 ( ( -LRB- cord-276978-xl4u7n6r 89 32 see see VB cord-276978-xl4u7n6r 89 33 Note Note NNP cord-276978-xl4u7n6r 89 34 12 12 CD cord-276978-xl4u7n6r 89 35 ) ) -RRB- cord-276978-xl4u7n6r 89 36 . . . cord-276978-xl4u7n6r 90 1 1 1 LS cord-276978-xl4u7n6r 90 2 . . . cord-276978-xl4u7n6r 91 1 In in IN cord-276978-xl4u7n6r 91 2 addition addition NN cord-276978-xl4u7n6r 91 3 to to IN cord-276978-xl4u7n6r 91 4 coronaviruses coronaviruse NNS cord-276978-xl4u7n6r 91 5 , , , cord-276978-xl4u7n6r 91 6 this this DT cord-276978-xl4u7n6r 91 7 procedure procedure NN cord-276978-xl4u7n6r 91 8 has have VBZ cord-276978-xl4u7n6r 91 9 been be VBN cord-276978-xl4u7n6r 91 10 successfully successfully RB cord-276978-xl4u7n6r 91 11 applied apply VBN cord-276978-xl4u7n6r 91 12 to to TO cord-276978-xl4u7n6r 91 13 amplify amplify VB cord-276978-xl4u7n6r 91 14 and and CC cord-276978-xl4u7n6r 91 15 sequence sequence VB cord-276978-xl4u7n6r 91 16 novel novel NN cord-276978-xl4u7n6r 91 17 astrovirus astrovirus NNP cord-276978-xl4u7n6r 91 18 and and CC cord-276978-xl4u7n6r 91 19 picornavirus picornavirus NNP cord-276978-xl4u7n6r 91 20 genomes genome NNS cord-276978-xl4u7n6r 91 21 , , , cord-276978-xl4u7n6r 91 22 and and CC cord-276978-xl4u7n6r 91 23 potentially potentially RB cord-276978-xl4u7n6r 91 24 all all DT cord-276978-xl4u7n6r 91 25 polyadenylated polyadenylate VBN cord-276978-xl4u7n6r 91 26 viral viral JJ cord-276978-xl4u7n6r 91 27 genomes genome NNS cord-276978-xl4u7n6r 91 28 harboring harbor VBG cord-276978-xl4u7n6r 91 29 s2 s2 NNP cord-276978-xl4u7n6r 91 30 m m NNP cord-276978-xl4u7n6r 91 31 can can MD cord-276978-xl4u7n6r 91 32 be be VB cord-276978-xl4u7n6r 91 33 identified identify VBN cord-276978-xl4u7n6r 91 34 and and CC cord-276978-xl4u7n6r 91 35 characterized characterize VBN cord-276978-xl4u7n6r 91 36 with with IN cord-276978-xl4u7n6r 91 37 this this DT cord-276978-xl4u7n6r 91 38 procedure procedure NN cord-276978-xl4u7n6r 91 39 . . . cord-276978-xl4u7n6r 92 1 However however RB cord-276978-xl4u7n6r 92 2 , , , cord-276978-xl4u7n6r 92 3 when when WRB cord-276978-xl4u7n6r 92 4 used use VBN cord-276978-xl4u7n6r 92 5 on on IN cord-276978-xl4u7n6r 92 6 biological biological JJ cord-276978-xl4u7n6r 92 7 samples sample NNS cord-276978-xl4u7n6r 92 8 that that WDT cord-276978-xl4u7n6r 92 9 do do VBP cord-276978-xl4u7n6r 92 10 not not RB cord-276978-xl4u7n6r 92 11 contain contain VB cord-276978-xl4u7n6r 92 12 s2m s2m NNP cord-276978-xl4u7n6r 92 13 - - HYPH cord-276978-xl4u7n6r 92 14 harboring harbor VBG cord-276978-xl4u7n6r 92 15 viruses virus NNS cord-276978-xl4u7n6r 92 16 , , , cord-276978-xl4u7n6r 92 17 nonspecific nonspecific JJ cord-276978-xl4u7n6r 92 18 amplification amplification NN cord-276978-xl4u7n6r 92 19 of of IN cord-276978-xl4u7n6r 92 20 host host NN cord-276978-xl4u7n6r 92 21 cell cell NN cord-276978-xl4u7n6r 92 22 ribosomal ribosomal NNP cord-276978-xl4u7n6r 92 23 RNA RNA NNP cord-276978-xl4u7n6r 92 24 is be VBZ cord-276978-xl4u7n6r 92 25 obtained obtain VBN cord-276978-xl4u7n6r 92 26 on on IN cord-276978-xl4u7n6r 92 27 some some DT cord-276978-xl4u7n6r 92 28 occasions occasion NNS cord-276978-xl4u7n6r 92 29 . . . cord-276978-xl4u7n6r 93 1 2 2 LS cord-276978-xl4u7n6r 93 2 . . . cord-276978-xl4u7n6r 94 1 We -PRON- PRP cord-276978-xl4u7n6r 94 2 have have VBP cord-276978-xl4u7n6r 94 3 generally generally RB cord-276978-xl4u7n6r 94 4 used use VBN cord-276978-xl4u7n6r 94 5 1 1 CD cord-276978-xl4u7n6r 94 6 l l NN cord-276978-xl4u7n6r 94 7 anchored anchor VBD cord-276978-xl4u7n6r 94 8 oligo(dT oligo(dt CD cord-276978-xl4u7n6r 94 9 ) ) -RRB- cord-276978-xl4u7n6r 94 10 18 18 CD cord-276978-xl4u7n6r 94 11 ( ( -LRB- cord-276978-xl4u7n6r 94 12 25 25 CD cord-276978-xl4u7n6r 94 13 M M NNP cord-276978-xl4u7n6r 94 14 ) ) -RRB- cord-276978-xl4u7n6r 94 15 in in IN cord-276978-xl4u7n6r 94 16 the the DT cord-276978-xl4u7n6r 94 17 RT RT NNP cord-276978-xl4u7n6r 94 18 , , , cord-276978-xl4u7n6r 94 19 but but CC cord-276978-xl4u7n6r 94 20 1 1 CD cord-276978-xl4u7n6r 94 21 l l NN cord-276978-xl4u7n6r 94 22 Invitrogens Invitrogens NNP cord-276978-xl4u7n6r 94 23 anchored anchor VBD cord-276978-xl4u7n6r 94 24 oligo(dT oligo(dt CD cord-276978-xl4u7n6r 94 25 ) ) -RRB- cord-276978-xl4u7n6r 94 26 20 20 CD cord-276978-xl4u7n6r 94 27 ( ( -LRB- cord-276978-xl4u7n6r 94 28 2.5 2.5 CD cord-276978-xl4u7n6r 94 29 g g NN cord-276978-xl4u7n6r 94 30 / / SYM cord-276978-xl4u7n6r 94 31 l l NN cord-276978-xl4u7n6r 94 32 , , , cord-276978-xl4u7n6r 94 33 corresponding correspond VBG cord-276978-xl4u7n6r 94 34 to to IN cord-276978-xl4u7n6r 94 35 ca ca NNP cord-276978-xl4u7n6r 94 36 . . . cord-276978-xl4u7n6r 95 1 350 350 CD cord-276978-xl4u7n6r 95 2 M M NNP cord-276978-xl4u7n6r 95 3 ) ) -RRB- cord-276978-xl4u7n6r 95 4 , , , cord-276978-xl4u7n6r 95 5 or or CC cord-276978-xl4u7n6r 95 6 Invitrogens Invitrogens NNP cord-276978-xl4u7n6r 95 7 standard standard NN cord-276978-xl4u7n6r 95 8 oligo(dT oligo(dt CD cord-276978-xl4u7n6r 95 9 ) ) -RRB- cord-276978-xl4u7n6r 95 10 20 20 CD cord-276978-xl4u7n6r 95 11 ( ( -LRB- cord-276978-xl4u7n6r 95 12 50 50 CD cord-276978-xl4u7n6r 95 13 M M NNP cord-276978-xl4u7n6r 95 14 ) ) -RRB- cord-276978-xl4u7n6r 95 15 , , , cord-276978-xl4u7n6r 95 16 has have VBZ cord-276978-xl4u7n6r 95 17 also also RB cord-276978-xl4u7n6r 95 18 been be VBN cord-276978-xl4u7n6r 95 19 used use VBN cord-276978-xl4u7n6r 95 20 successfully successfully RB cord-276978-xl4u7n6r 95 21 as as IN cord-276978-xl4u7n6r 95 22 a a DT cord-276978-xl4u7n6r 95 23 reverse reverse JJ cord-276978-xl4u7n6r 95 24 primer primer NN cord-276978-xl4u7n6r 95 25 . . . cord-276978-xl4u7n6r 96 1 3 3 LS cord-276978-xl4u7n6r 96 2 . . . cord-276978-xl4u7n6r 97 1 The the DT cord-276978-xl4u7n6r 97 2 obtained obtain VBN cord-276978-xl4u7n6r 97 3 PCR pcr NN cord-276978-xl4u7n6r 97 4 products product NNS cord-276978-xl4u7n6r 97 5 often often RB cord-276978-xl4u7n6r 97 6 give give VBP cord-276978-xl4u7n6r 97 7 a a DT cord-276978-xl4u7n6r 97 8 smear smear NN cord-276978-xl4u7n6r 97 9 on on IN cord-276978-xl4u7n6r 97 10 visualization visualization NN cord-276978-xl4u7n6r 97 11 on on IN cord-276978-xl4u7n6r 97 12 agarose agarose JJ cord-276978-xl4u7n6r 97 13 gel gel NN cord-276978-xl4u7n6r 97 14 , , , cord-276978-xl4u7n6r 97 15 owing owe VBG cord-276978-xl4u7n6r 97 16 to to IN cord-276978-xl4u7n6r 97 17 serial serial JJ cord-276978-xl4u7n6r 97 18 mispriming mispriming NN cord-276978-xl4u7n6r 97 19 of of IN cord-276978-xl4u7n6r 97 20 the the DT cord-276978-xl4u7n6r 97 21 anchored anchored JJ cord-276978-xl4u7n6r 97 22 oligo(dT oligo(dt CD cord-276978-xl4u7n6r 97 23 ) ) -RRB- cord-276978-xl4u7n6r 97 24 primer primer NN cord-276978-xl4u7n6r 97 25 on on IN cord-276978-xl4u7n6r 97 26 the the DT cord-276978-xl4u7n6r 97 27 3 3 CD cord-276978-xl4u7n6r 97 28 poly(A poly(a JJ cord-276978-xl4u7n6r 97 29 ) ) -RRB- cord-276978-xl4u7n6r 97 30 tail tail NN cord-276978-xl4u7n6r 97 31 , , , cord-276978-xl4u7n6r 97 32 leading lead VBG cord-276978-xl4u7n6r 97 33 to to IN cord-276978-xl4u7n6r 97 34 long long JJ cord-276978-xl4u7n6r 97 35 - - HYPH cord-276978-xl4u7n6r 97 36 range range NN cord-276978-xl4u7n6r 97 37 accumulation accumulation NN cord-276978-xl4u7n6r 97 38 of of IN cord-276978-xl4u7n6r 97 39 As as IN cord-276978-xl4u7n6r 97 40 in in IN cord-276978-xl4u7n6r 97 41 the the DT cord-276978-xl4u7n6r 97 42 PCR PCR NNP cord-276978-xl4u7n6r 97 43 products product NNS cord-276978-xl4u7n6r 97 44 that that WDT cord-276978-xl4u7n6r 97 45 can can MD cord-276978-xl4u7n6r 97 46 be be VB cord-276978-xl4u7n6r 97 47 observed observe VBN cord-276978-xl4u7n6r 97 48 upon upon IN cord-276978-xl4u7n6r 97 49 sequencing sequence VBG cord-276978-xl4u7n6r 97 50 . . . cord-276978-xl4u7n6r 98 1 However however RB cord-276978-xl4u7n6r 98 2 , , , cord-276978-xl4u7n6r 98 3 if if IN cord-276978-xl4u7n6r 98 4 amplification amplification NN cord-276978-xl4u7n6r 98 5 is be VBZ cord-276978-xl4u7n6r 98 6 successful successful JJ cord-276978-xl4u7n6r 98 7 , , , cord-276978-xl4u7n6r 98 8 all all DT cord-276978-xl4u7n6r 98 9 PCR PCR NNP cord-276978-xl4u7n6r 98 10 products product NNS cord-276978-xl4u7n6r 98 11 , , , cord-276978-xl4u7n6r 98 12 regardless regardless RB cord-276978-xl4u7n6r 98 13 of of IN cord-276978-xl4u7n6r 98 14 the the DT cord-276978-xl4u7n6r 98 15 number number NN cord-276978-xl4u7n6r 98 16 of of IN cord-276978-xl4u7n6r 98 17 terminal terminal NN cord-276978-xl4u7n6r 99 1 As as IN cord-276978-xl4u7n6r 99 2 , , , cord-276978-xl4u7n6r 99 3 have have VBP cord-276978-xl4u7n6r 99 4 the the DT cord-276978-xl4u7n6r 99 5 same same JJ cord-276978-xl4u7n6r 99 6 start start NN cord-276978-xl4u7n6r 99 7 at at IN cord-276978-xl4u7n6r 99 8 s2 s2 NNP cord-276978-xl4u7n6r 99 9 m m NNP cord-276978-xl4u7n6r 99 10 , , , cord-276978-xl4u7n6r 99 11 as as IN cord-276978-xl4u7n6r 99 12 the the DT cord-276978-xl4u7n6r 99 13 s2m s2m JJ cord-276978-xl4u7n6r 99 14 - - HYPH cord-276978-xl4u7n6r 99 15 core core JJ cord-276978-xl4u7n6r 99 16 primer primer NN cord-276978-xl4u7n6r 99 17 is be VBZ cord-276978-xl4u7n6r 99 18 highly highly RB cord-276978-xl4u7n6r 99 19 specific specific JJ cord-276978-xl4u7n6r 99 20 , , , cord-276978-xl4u7n6r 99 21 and and CC cord-276978-xl4u7n6r 99 22 the the DT cord-276978-xl4u7n6r 99 23 PCR PCR NNP cord-276978-xl4u7n6r 99 24 product product NN cord-276978-xl4u7n6r 99 25 smear smear NN cord-276978-xl4u7n6r 99 26 can can MD cord-276978-xl4u7n6r 99 27 be be VB cord-276978-xl4u7n6r 99 28 sequenced sequence VBN cord-276978-xl4u7n6r 99 29 using use VBG cord-276978-xl4u7n6r 99 30 s2m s2m JJ cord-276978-xl4u7n6r 99 31 - - HYPH cord-276978-xl4u7n6r 99 32 core core JJ cord-276978-xl4u7n6r 99 33 or or CC cord-276978-xl4u7n6r 99 34 s2m s2m JJ cord-276978-xl4u7n6r 99 35 - - HYPH cord-276978-xl4u7n6r 99 36 coreseq coreseq JJ cord-276978-xl4u7n6r 99 37 primer primer NN cord-276978-xl4u7n6r 99 38 . . . cord-276978-xl4u7n6r 100 1 4 4 LS cord-276978-xl4u7n6r 100 2 . . . cord-276978-xl4u7n6r 101 1 As as IN cord-276978-xl4u7n6r 101 2 several several JJ cord-276978-xl4u7n6r 101 3 of of IN cord-276978-xl4u7n6r 101 4 the the DT cord-276978-xl4u7n6r 101 5 viruses virus NNS cord-276978-xl4u7n6r 101 6 harboring harbor VBG cord-276978-xl4u7n6r 101 7 s2 s2 NNP cord-276978-xl4u7n6r 101 8 m m NNP cord-276978-xl4u7n6r 101 9 do do TO cord-276978-xl4u7n6r 101 10 terminate terminate VB cord-276978-xl4u7n6r 101 11 the the DT cord-276978-xl4u7n6r 101 12 genome genome NN cord-276978-xl4u7n6r 101 13 with with IN cord-276978-xl4u7n6r 101 14 GC(A)n GC(A)n NNP cord-276978-xl4u7n6r 101 15 , , , cord-276978-xl4u7n6r 101 16 AV12 AV12 NNP cord-276978-xl4u7n6r 101 17 ( ( -LRB- cord-276978-xl4u7n6r 101 18 2.5 2.5 CD cord-276978-xl4u7n6r 101 19 M M NNP cord-276978-xl4u7n6r 101 20 ) ) -RRB- cord-276978-xl4u7n6r 101 21 can can MD cord-276978-xl4u7n6r 101 22 often often RB cord-276978-xl4u7n6r 101 23 be be VB cord-276978-xl4u7n6r 101 24 used use VBN cord-276978-xl4u7n6r 101 25 for for IN cord-276978-xl4u7n6r 101 26 sequencing sequence VBG cord-276978-xl4u7n6r 101 27 the the DT cord-276978-xl4u7n6r 101 28 opposite opposite JJ cord-276978-xl4u7n6r 101 29 strand strand NN cord-276978-xl4u7n6r 101 30 . . . cord-276978-xl4u7n6r 102 1 If if IN cord-276978-xl4u7n6r 102 2 low low JJ cord-276978-xl4u7n6r 102 3 signal signal NN cord-276978-xl4u7n6r 102 4 intensity intensity NN cord-276978-xl4u7n6r 102 5 is be VBZ cord-276978-xl4u7n6r 102 6 obtained obtain VBN cord-276978-xl4u7n6r 102 7 for for IN cord-276978-xl4u7n6r 102 8 the the DT cord-276978-xl4u7n6r 102 9 sequences sequence NNS cord-276978-xl4u7n6r 102 10 , , , cord-276978-xl4u7n6r 102 11 the the DT cord-276978-xl4u7n6r 102 12 following following JJ cord-276978-xl4u7n6r 102 13 modifications modification NNS cord-276978-xl4u7n6r 102 14 can can MD cord-276978-xl4u7n6r 102 15 be be VB cord-276978-xl4u7n6r 102 16 made make VBN cord-276978-xl4u7n6r 102 17 in in IN cord-276978-xl4u7n6r 102 18 the the DT cord-276978-xl4u7n6r 102 19 cycle cycle NN cord-276978-xl4u7n6r 102 20 sequencing sequencing NN cord-276978-xl4u7n6r 102 21 program program NN cord-276978-xl4u7n6r 102 22 : : : cord-276978-xl4u7n6r 102 23 lowering lower VBG cord-276978-xl4u7n6r 102 24 the the DT cord-276978-xl4u7n6r 102 25 annealing anneal VBG cord-276978-xl4u7n6r 102 26 temperature temperature NN cord-276978-xl4u7n6r 102 27 to to IN cord-276978-xl4u7n6r 102 28 50 50 CD cord-276978-xl4u7n6r 102 29 • • NN cord-276978-xl4u7n6r 102 30 C c NN cord-276978-xl4u7n6r 103 1 and/or and/or CC cord-276978-xl4u7n6r 103 2 adding add VBG cord-276978-xl4u7n6r 103 3 5 5 CD cord-276978-xl4u7n6r 103 4 - - SYM cord-276978-xl4u7n6r 103 5 10 10 CD cord-276978-xl4u7n6r 103 6 cycles cycle NNS cord-276978-xl4u7n6r 103 7 in in IN cord-276978-xl4u7n6r 103 8 the the DT cord-276978-xl4u7n6r 103 9 cycle cycle NN cord-276978-xl4u7n6r 103 10 sequencing sequencing NN cord-276978-xl4u7n6r 103 11 reaction reaction NN cord-276978-xl4u7n6r 103 12 . . . cord-276978-xl4u7n6r 104 1 5 5 LS cord-276978-xl4u7n6r 104 2 . . . cord-276978-xl4u7n6r 105 1 Once once RB cord-276978-xl4u7n6r 105 2 a a DT cord-276978-xl4u7n6r 105 3 specific specific JJ cord-276978-xl4u7n6r 105 4 reverse reverse NN cord-276978-xl4u7n6r 105 5 primer primer NN cord-276978-xl4u7n6r 105 6 can can MD cord-276978-xl4u7n6r 105 7 be be VB cord-276978-xl4u7n6r 105 8 designed design VBN cord-276978-xl4u7n6r 105 9 as as IN cord-276978-xl4u7n6r 105 10 described describe VBN cord-276978-xl4u7n6r 105 11 in in IN cord-276978-xl4u7n6r 105 12 Section Section NNP cord-276978-xl4u7n6r 105 13 3.2 3.2 CD cord-276978-xl4u7n6r 105 14 , , , cord-276978-xl4u7n6r 105 15 an an DT cord-276978-xl4u7n6r 105 16 alternative alternative JJ cord-276978-xl4u7n6r 105 17 strategy strategy NN cord-276978-xl4u7n6r 105 18 to to IN cord-276978-xl4u7n6r 105 19 5 5 CD cord-276978-xl4u7n6r 105 20 -RACE -race NN cord-276978-xl4u7n6r 105 21 / / SYM cord-276978-xl4u7n6r 105 22 primer primer NN cord-276978-xl4u7n6r 105 23 walking walking NN cord-276978-xl4u7n6r 105 24 is be VBZ cord-276978-xl4u7n6r 105 25 to to TO cord-276978-xl4u7n6r 105 26 amplify amplify VB cord-276978-xl4u7n6r 105 27 directly directly RB cord-276978-xl4u7n6r 105 28 a a DT cord-276978-xl4u7n6r 105 29 long long JJ cord-276978-xl4u7n6r 105 30 PCR PCR NNP cord-276978-xl4u7n6r 105 31 product product NN cord-276978-xl4u7n6r 105 32 using use VBG cord-276978-xl4u7n6r 105 33 upstream upstream JJ cord-276978-xl4u7n6r 105 34 primers primer NNS cord-276978-xl4u7n6r 105 35 in in IN cord-276978-xl4u7n6r 105 36 conserved conserved JJ cord-276978-xl4u7n6r 105 37 family family NN cord-276978-xl4u7n6r 105 38 - - HYPH cord-276978-xl4u7n6r 105 39 specific specific JJ cord-276978-xl4u7n6r 105 40 motifs motif NNS cord-276978-xl4u7n6r 105 41 , , , cord-276978-xl4u7n6r 105 42 e.g. e.g. RB cord-276978-xl4u7n6r 105 43 , , , cord-276978-xl4u7n6r 105 44 in in IN cord-276978-xl4u7n6r 105 45 the the DT cord-276978-xl4u7n6r 105 46 polymerase polymerase NN cord-276978-xl4u7n6r 105 47 gene gene NN cord-276978-xl4u7n6r 105 48 . . . cord-276978-xl4u7n6r 106 1 This this DT cord-276978-xl4u7n6r 106 2 will will MD cord-276978-xl4u7n6r 106 3 be be VB cord-276978-xl4u7n6r 106 4 achieved achieve VBN cord-276978-xl4u7n6r 106 5 more more RBR cord-276978-xl4u7n6r 106 6 easily easily RB cord-276978-xl4u7n6r 106 7 with with IN cord-276978-xl4u7n6r 106 8 viruses virus NNS cord-276978-xl4u7n6r 106 9 that that WDT cord-276978-xl4u7n6r 106 10 have have VBP cord-276978-xl4u7n6r 106 11 small small JJ cord-276978-xl4u7n6r 106 12 genomes genome NNS cord-276978-xl4u7n6r 106 13 , , , cord-276978-xl4u7n6r 106 14 such such JJ cord-276978-xl4u7n6r 106 15 as as IN cord-276978-xl4u7n6r 106 16 astrovirus astrovirus NNP cord-276978-xl4u7n6r 106 17 and and CC cord-276978-xl4u7n6r 106 18 picornavirus picornavirus NNP cord-276978-xl4u7n6r 106 19 , , , cord-276978-xl4u7n6r 106 20 especially especially RB cord-276978-xl4u7n6r 106 21 when when WRB cord-276978-xl4u7n6r 106 22 the the DT cord-276978-xl4u7n6r 106 23 polymerase polymerase NN cord-276978-xl4u7n6r 106 24 is be VBZ cord-276978-xl4u7n6r 106 25 encoded encode VBN cord-276978-xl4u7n6r 106 26 toward toward IN cord-276978-xl4u7n6r 106 27 the the DT cord-276978-xl4u7n6r 106 28 3 3 CD cord-276978-xl4u7n6r 106 29 -end -end : cord-276978-xl4u7n6r 106 30 of of IN cord-276978-xl4u7n6r 106 31 the the DT cord-276978-xl4u7n6r 106 32 genome genome NN cord-276978-xl4u7n6r 106 33 , , , cord-276978-xl4u7n6r 106 34 rather rather RB cord-276978-xl4u7n6r 106 35 than than IN cord-276978-xl4u7n6r 106 36 with with IN cord-276978-xl4u7n6r 106 37 coronaviruses coronaviruse NNS cord-276978-xl4u7n6r 106 38 that that WDT cord-276978-xl4u7n6r 106 39 have have VBP cord-276978-xl4u7n6r 106 40 a a DT cord-276978-xl4u7n6r 106 41 large large JJ cord-276978-xl4u7n6r 106 42 genome genome NN cord-276978-xl4u7n6r 106 43 . . . cord-276978-xl4u7n6r 107 1 In in IN cord-276978-xl4u7n6r 107 2 our -PRON- PRP$ cord-276978-xl4u7n6r 107 3 laboratory laboratory NN cord-276978-xl4u7n6r 107 4 , , , cord-276978-xl4u7n6r 107 5 we -PRON- PRP cord-276978-xl4u7n6r 107 6 were be VBD cord-276978-xl4u7n6r 107 7 able able JJ cord-276978-xl4u7n6r 107 8 to to TO cord-276978-xl4u7n6r 107 9 get get VB cord-276978-xl4u7n6r 107 10 sequence sequence NN cord-276978-xl4u7n6r 107 11 information information NN cord-276978-xl4u7n6r 107 12 by by IN cord-276978-xl4u7n6r 107 13 using use VBG cord-276978-xl4u7n6r 107 14 the the DT cord-276978-xl4u7n6r 107 15 sense sense NN cord-276978-xl4u7n6r 108 1 2Bm 2bm JJ cord-276978-xl4u7n6r 108 2 primer primer NN cord-276978-xl4u7n6r 108 3 designed design VBN cord-276978-xl4u7n6r 108 4 by by IN cord-276978-xl4u7n6r 108 5 Stephensen Stephensen NNP cord-276978-xl4u7n6r 108 6 et et NNP cord-276978-xl4u7n6r 108 7 al al NNP cord-276978-xl4u7n6r 108 8 . . . cord-276978-xl4u7n6r 109 1 in in IN cord-276978-xl4u7n6r 109 2 1999 1999 CD cord-276978-xl4u7n6r 109 3 ( ( -LRB- cord-276978-xl4u7n6r 109 4 7 7 CD cord-276978-xl4u7n6r 109 5 ) ) -RRB- cord-276978-xl4u7n6r 109 6 toward toward IN cord-276978-xl4u7n6r 109 7 the the DT cord-276978-xl4u7n6r 109 8 coronavirus coronavirus NN cord-276978-xl4u7n6r 109 9 specific specific JJ cord-276978-xl4u7n6r 109 10 primer primer NN cord-276978-xl4u7n6r 109 11 at at IN cord-276978-xl4u7n6r 109 12 the the DT cord-276978-xl4u7n6r 109 13 3 3 CD cord-276978-xl4u7n6r 109 14 -end -end : cord-276978-xl4u7n6r 109 15 of of IN cord-276978-xl4u7n6r 109 16 the the DT cord-276978-xl4u7n6r 109 17 coronavirus coronavirus NN cord-276978-xl4u7n6r 109 18 genome genome NN cord-276978-xl4u7n6r 109 19 . . . cord-276978-xl4u7n6r 110 1 However however RB cord-276978-xl4u7n6r 110 2 , , , cord-276978-xl4u7n6r 110 3 the the DT cord-276978-xl4u7n6r 110 4 PCR PCR NNP cord-276978-xl4u7n6r 110 5 product product NN cord-276978-xl4u7n6r 110 6 yield yield NN cord-276978-xl4u7n6r 110 7 was be VBD cord-276978-xl4u7n6r 110 8 low low JJ cord-276978-xl4u7n6r 110 9 , , , cord-276978-xl4u7n6r 110 10 and and CC cord-276978-xl4u7n6r 110 11 only only RB cord-276978-xl4u7n6r 110 12 short short JJ cord-276978-xl4u7n6r 110 13 sequence sequence NN cord-276978-xl4u7n6r 110 14 stretches stretch NNS cord-276978-xl4u7n6r 110 15 could could MD cord-276978-xl4u7n6r 110 16 be be VB cord-276978-xl4u7n6r 110 17 obtained obtain VBN cord-276978-xl4u7n6r 110 18 in in IN cord-276978-xl4u7n6r 110 19 this this DT cord-276978-xl4u7n6r 110 20 way way NN cord-276978-xl4u7n6r 110 21 . . . cord-276978-xl4u7n6r 111 1 6 6 LS cord-276978-xl4u7n6r 111 2 . . . cord-276978-xl4u7n6r 112 1 The the DT cord-276978-xl4u7n6r 112 2 RT RT NNP cord-276978-xl4u7n6r 112 3 in in IN cord-276978-xl4u7n6r 112 4 the the DT cord-276978-xl4u7n6r 112 5 5 5 CD cord-276978-xl4u7n6r 112 6 -RACE -race NN cord-276978-xl4u7n6r 112 7 procedure procedure NN cord-276978-xl4u7n6r 112 8 is be VBZ cord-276978-xl4u7n6r 112 9 laborious laborious JJ cord-276978-xl4u7n6r 112 10 , , , cord-276978-xl4u7n6r 112 11 as as IN cord-276978-xl4u7n6r 112 12 no no DT cord-276978-xl4u7n6r 112 13 mix mix NN cord-276978-xl4u7n6r 112 14 containing contain VBG cord-276978-xl4u7n6r 112 15 all all PDT cord-276978-xl4u7n6r 112 16 the the DT cord-276978-xl4u7n6r 112 17 reagents reagent NNS cord-276978-xl4u7n6r 112 18 is be VBZ cord-276978-xl4u7n6r 112 19 prepared prepare VBN cord-276978-xl4u7n6r 112 20 in in IN cord-276978-xl4u7n6r 112 21 advance advance NN cord-276978-xl4u7n6r 112 22 , , , cord-276978-xl4u7n6r 112 23 but but CC cord-276978-xl4u7n6r 112 24 , , , cord-276978-xl4u7n6r 112 25 rather rather RB cord-276978-xl4u7n6r 112 26 , , , cord-276978-xl4u7n6r 112 27 primer primer NN cord-276978-xl4u7n6r 112 28 and and CC cord-276978-xl4u7n6r 112 29 enzymes enzyme NNS cord-276978-xl4u7n6r 112 30 are be VBP cord-276978-xl4u7n6r 112 31 added add VBN cord-276978-xl4u7n6r 112 32 individually individually RB cord-276978-xl4u7n6r 112 33 to to IN cord-276978-xl4u7n6r 112 34 each each DT cord-276978-xl4u7n6r 112 35 sample sample NN cord-276978-xl4u7n6r 112 36 . . . cord-276978-xl4u7n6r 113 1 In in IN cord-276978-xl4u7n6r 113 2 addition addition NN cord-276978-xl4u7n6r 113 3 , , , cord-276978-xl4u7n6r 113 4 the the DT cord-276978-xl4u7n6r 113 5 5 5 CD cord-276978-xl4u7n6r 113 6 -RACE -race NN cord-276978-xl4u7n6r 113 7 procedure procedure NN cord-276978-xl4u7n6r 113 8 described describe VBN cord-276978-xl4u7n6r 113 9 in in IN cord-276978-xl4u7n6r 113 10 the the DT cord-276978-xl4u7n6r 113 11 Invitrogen Invitrogen NNP cord-276978-xl4u7n6r 113 12 handbook handbook NN cord-276978-xl4u7n6r 113 13 suggests suggest VBZ cord-276978-xl4u7n6r 113 14 that that IN cord-276978-xl4u7n6r 113 15 the the DT cord-276978-xl4u7n6r 113 16 RNase rnase NN cord-276978-xl4u7n6r 113 17 treatment treatment NN cord-276978-xl4u7n6r 113 18 of of IN cord-276978-xl4u7n6r 113 19 the the DT cord-276978-xl4u7n6r 113 20 sample sample NN cord-276978-xl4u7n6r 113 21 be be VB cord-276978-xl4u7n6r 113 22 performed perform VBN cord-276978-xl4u7n6r 113 23 on on IN cord-276978-xl4u7n6r 113 24 freshly freshly RB cord-276978-xl4u7n6r 113 25 synthesized synthesize VBN cord-276978-xl4u7n6r 113 26 cDNA cdna NN cord-276978-xl4u7n6r 113 27 , , , cord-276978-xl4u7n6r 113 28 that that WDT cord-276978-xl4u7n6r 113 29 has have VBZ cord-276978-xl4u7n6r 113 30 not not RB cord-276978-xl4u7n6r 113 31 been be VBN cord-276978-xl4u7n6r 113 32 frozen freeze VBN cord-276978-xl4u7n6r 113 33 . . . cord-276978-xl4u7n6r 114 1 This this DT cord-276978-xl4u7n6r 114 2 is be VBZ cord-276978-xl4u7n6r 114 3 why why WRB cord-276978-xl4u7n6r 114 4 the the DT cord-276978-xl4u7n6r 114 5 initial initial JJ cord-276978-xl4u7n6r 114 6 RT RT NNP cord-276978-xl4u7n6r 114 7 step step NN cord-276978-xl4u7n6r 114 8 described describe VBN cord-276978-xl4u7n6r 114 9 in in IN cord-276978-xl4u7n6r 114 10 Section Section NNP cord-276978-xl4u7n6r 114 11 3.1 3.1 CD cord-276978-xl4u7n6r 114 12 , , , cord-276978-xl4u7n6r 114 13 performed perform VBN cord-276978-xl4u7n6r 114 14 in in IN cord-276978-xl4u7n6r 114 15 order order NN cord-276978-xl4u7n6r 114 16 to to TO cord-276978-xl4u7n6r 114 17 check check VB cord-276978-xl4u7n6r 114 18 novel novel JJ cord-276978-xl4u7n6r 114 19 coronavirus coronavirus NN cord-276978-xl4u7n6r 114 20 genomes genome NNS cord-276978-xl4u7n6r 114 21 for for IN cord-276978-xl4u7n6r 114 22 the the DT cord-276978-xl4u7n6r 114 23 presence presence NN cord-276978-xl4u7n6r 114 24 of of IN cord-276978-xl4u7n6r 114 25 s2 s2 NNP cord-276978-xl4u7n6r 114 26 m m NNP cord-276978-xl4u7n6r 114 27 , , , cord-276978-xl4u7n6r 114 28 makes make VBZ cord-276978-xl4u7n6r 114 29 use use NN cord-276978-xl4u7n6r 114 30 of of IN cord-276978-xl4u7n6r 114 31 a a DT cord-276978-xl4u7n6r 114 32 simpler simple JJR cord-276978-xl4u7n6r 114 33 RT RT NNP cord-276978-xl4u7n6r 114 34 protocol protocol NN cord-276978-xl4u7n6r 114 35 . . . cord-276978-xl4u7n6r 115 1 7 7 CD cord-276978-xl4u7n6r 115 2 . . . cord-276978-xl4u7n6r 116 1 An an DT cord-276978-xl4u7n6r 116 2 increased increase VBN cord-276978-xl4u7n6r 116 3 amount amount NN cord-276978-xl4u7n6r 116 4 of of IN cord-276978-xl4u7n6r 116 5 the the DT cord-276978-xl4u7n6r 116 6 Superscript Superscript NNP cord-276978-xl4u7n6r 116 7 III III NNP cord-276978-xl4u7n6r 116 8 reverse reverse NN cord-276978-xl4u7n6r 116 9 transcriptase transcriptase NN cord-276978-xl4u7n6r 116 10 ( ( -LRB- cord-276978-xl4u7n6r 116 11 400 400 CD cord-276978-xl4u7n6r 116 12 U u NN cord-276978-xl4u7n6r 116 13 per per IN cord-276978-xl4u7n6r 116 14 reaction reaction NN cord-276978-xl4u7n6r 116 15 instead instead RB cord-276978-xl4u7n6r 116 16 of of IN cord-276978-xl4u7n6r 116 17 the the DT cord-276978-xl4u7n6r 116 18 normally normally RB cord-276978-xl4u7n6r 116 19 200 200 CD cord-276978-xl4u7n6r 116 20 U u NN cord-276978-xl4u7n6r 116 21 ) ) -RRB- cord-276978-xl4u7n6r 116 22 is be VBZ cord-276978-xl4u7n6r 116 23 used use VBN cord-276978-xl4u7n6r 116 24 for for IN cord-276978-xl4u7n6r 116 25 long long JJ cord-276978-xl4u7n6r 116 26 - - HYPH cord-276978-xl4u7n6r 116 27 range range NN cord-276978-xl4u7n6r 116 28 cDNA cdna NN cord-276978-xl4u7n6r 116 29 synthesis synthesis NN cord-276978-xl4u7n6r 116 30 in in IN cord-276978-xl4u7n6r 116 31 the the DT cord-276978-xl4u7n6r 116 32 5 5 CD cord-276978-xl4u7n6r 116 33 -RACE -race NN cord-276978-xl4u7n6r 116 34 strategy strategy NN cord-276978-xl4u7n6r 116 35 . . . cord-276978-xl4u7n6r 117 1 In in IN cord-276978-xl4u7n6r 117 2 addition addition NN cord-276978-xl4u7n6r 117 3 , , , cord-276978-xl4u7n6r 117 4 this this DT cord-276978-xl4u7n6r 117 5 enzyme enzyme NN cord-276978-xl4u7n6r 117 6 allows allow VBZ cord-276978-xl4u7n6r 117 7 the the DT cord-276978-xl4u7n6r 117 8 reaction reaction NN cord-276978-xl4u7n6r 117 9 to to TO cord-276978-xl4u7n6r 117 10 be be VB cord-276978-xl4u7n6r 117 11 performed perform VBN cord-276978-xl4u7n6r 117 12 at at IN cord-276978-xl4u7n6r 117 13 a a DT cord-276978-xl4u7n6r 117 14 temperature temperature NN cord-276978-xl4u7n6r 117 15 as as RB cord-276978-xl4u7n6r 117 16 high high JJ cord-276978-xl4u7n6r 117 17 as as IN cord-276978-xl4u7n6r 117 18 55 55 CD cord-276978-xl4u7n6r 118 1 • • NNP cord-276978-xl4u7n6r 118 2 C C NNP cord-276978-xl4u7n6r 118 3 , , , cord-276978-xl4u7n6r 118 4 which which WDT cord-276978-xl4u7n6r 118 5 minimizes minimize VBZ cord-276978-xl4u7n6r 118 6 secondary secondary JJ cord-276978-xl4u7n6r 118 7 structures structure NNS cord-276978-xl4u7n6r 118 8 in in IN cord-276978-xl4u7n6r 118 9 RNA RNA NNP cord-276978-xl4u7n6r 118 10 and and CC cord-276978-xl4u7n6r 118 11 is be VBZ cord-276978-xl4u7n6r 118 12 RNase RNase NNP cord-276978-xl4u7n6r 118 13 H H NNP cord-276978-xl4u7n6r 118 14 negative negative JJ cord-276978-xl4u7n6r 118 15 , , , cord-276978-xl4u7n6r 118 16 which which WDT cord-276978-xl4u7n6r 118 17 increases increase VBZ cord-276978-xl4u7n6r 118 18 the the DT cord-276978-xl4u7n6r 118 19 yield yield NN cord-276978-xl4u7n6r 118 20 of of IN cord-276978-xl4u7n6r 118 21 full full JJ cord-276978-xl4u7n6r 118 22 - - HYPH cord-276978-xl4u7n6r 118 23 length length NN cord-276978-xl4u7n6r 118 24 cDNAs cdna NNS cord-276978-xl4u7n6r 118 25 . . . cord-276978-xl4u7n6r 119 1 8 8 CD cord-276978-xl4u7n6r 119 2 . . . cord-276978-xl4u7n6r 120 1 It -PRON- PRP cord-276978-xl4u7n6r 120 2 is be VBZ cord-276978-xl4u7n6r 120 3 important important JJ cord-276978-xl4u7n6r 120 4 to to TO cord-276978-xl4u7n6r 120 5 degrade degrade VB cord-276978-xl4u7n6r 120 6 the the DT cord-276978-xl4u7n6r 120 7 template template NN cord-276978-xl4u7n6r 120 8 RNA RNA NNP cord-276978-xl4u7n6r 120 9 from from IN cord-276978-xl4u7n6r 120 10 the the DT cord-276978-xl4u7n6r 120 11 newly newly RB cord-276978-xl4u7n6r 120 12 synthesized synthesize VBN cord-276978-xl4u7n6r 120 13 cDNA cdna NN cord-276978-xl4u7n6r 120 14 , , , cord-276978-xl4u7n6r 120 15 to to TO cord-276978-xl4u7n6r 120 16 avoid avoid VB cord-276978-xl4u7n6r 120 17 hybrid hybrid JJ cord-276978-xl4u7n6r 120 18 renaturation renaturation NN cord-276978-xl4u7n6r 120 19 prior prior RB cord-276978-xl4u7n6r 120 20 to to IN cord-276978-xl4u7n6r 120 21 the the DT cord-276978-xl4u7n6r 120 22 tailing tailing NN cord-276978-xl4u7n6r 120 23 step step NN cord-276978-xl4u7n6r 120 24 . . . cord-276978-xl4u7n6r 121 1 The the DT cord-276978-xl4u7n6r 121 2 RNase rnase NN cord-276978-xl4u7n6r 121 3 mix mix NN cord-276978-xl4u7n6r 121 4 consists consist VBZ cord-276978-xl4u7n6r 121 5 of of IN cord-276978-xl4u7n6r 121 6 both both DT cord-276978-xl4u7n6r 121 7 RNase rnase NN cord-276978-xl4u7n6r 121 8 H H NNP cord-276978-xl4u7n6r 121 9 to to TO cord-276978-xl4u7n6r 121 10 hydrolyze hydrolyze VB cord-276978-xl4u7n6r 121 11 RNA RNA NNP cord-276978-xl4u7n6r 121 12 bound bind VBN cord-276978-xl4u7n6r 121 13 to to IN cord-276978-xl4u7n6r 121 14 cDNA cdna NN cord-276978-xl4u7n6r 121 15 , , , cord-276978-xl4u7n6r 121 16 and and CC cord-276978-xl4u7n6r 121 17 RNase RNase NNP cord-276978-xl4u7n6r 121 18 T1 T1 NNP cord-276978-xl4u7n6r 121 19 to to TO cord-276978-xl4u7n6r 121 20 hydrolyze hydrolyze VB cord-276978-xl4u7n6r 121 21 free free JJ cord-276978-xl4u7n6r 121 22 RNA RNA NNP cord-276978-xl4u7n6r 121 23 molecules molecule NNS cord-276978-xl4u7n6r 121 24 . . . cord-276978-xl4u7n6r 122 1 9 9 LS cord-276978-xl4u7n6r 122 2 . . . cord-276978-xl4u7n6r 123 1 The the DT cord-276978-xl4u7n6r 123 2 5 5 CD cord-276978-xl4u7n6r 123 3 -RACE -race NN cord-276978-xl4u7n6r 123 4 PCR PCR NNP cord-276978-xl4u7n6r 123 5 is be VBZ cord-276978-xl4u7n6r 123 6 semispecific semispecific NNP cord-276978-xl4u7n6r 123 7 , , , cord-276978-xl4u7n6r 123 8 using use VBG cord-276978-xl4u7n6r 123 9 an an DT cord-276978-xl4u7n6r 123 10 anchor anchor NN cord-276978-xl4u7n6r 123 11 primer primer NN cord-276978-xl4u7n6r 123 12 as as IN cord-276978-xl4u7n6r 123 13 sense sense NN cord-276978-xl4u7n6r 123 14 primer primer NN cord-276978-xl4u7n6r 123 15 , , , cord-276978-xl4u7n6r 123 16 which which WDT cord-276978-xl4u7n6r 123 17 amplifies amplify VBZ cord-276978-xl4u7n6r 123 18 the the DT cord-276978-xl4u7n6r 123 19 poly(C)-tailed poly(C)-tailed NNP cord-276978-xl4u7n6r 123 20 template template NN cord-276978-xl4u7n6r 123 21 , , , cord-276978-xl4u7n6r 123 22 and and CC cord-276978-xl4u7n6r 123 23 a a DT cord-276978-xl4u7n6r 123 24 newly newly RB cord-276978-xl4u7n6r 123 25 designed design VBN cord-276978-xl4u7n6r 123 26 coronavirusspecific coronavirusspecific NNP cord-276978-xl4u7n6r 123 27 reverse reverse NN cord-276978-xl4u7n6r 123 28 primer primer NN cord-276978-xl4u7n6r 123 29 . . . cord-276978-xl4u7n6r 124 1 Even even RB cord-276978-xl4u7n6r 124 2 if if IN cord-276978-xl4u7n6r 124 3 care care NN cord-276978-xl4u7n6r 124 4 has have VBZ cord-276978-xl4u7n6r 124 5 been be VBN cord-276978-xl4u7n6r 124 6 taken take VBN cord-276978-xl4u7n6r 124 7 throughout throughout IN cord-276978-xl4u7n6r 124 8 the the DT cord-276978-xl4u7n6r 124 9 whole whole JJ cord-276978-xl4u7n6r 124 10 procedure procedure NN cord-276978-xl4u7n6r 124 11 to to TO cord-276978-xl4u7n6r 124 12 avoid avoid VB cord-276978-xl4u7n6r 124 13 synthesis synthesis NN cord-276978-xl4u7n6r 124 14 of of IN cord-276978-xl4u7n6r 124 15 short short JJ cord-276978-xl4u7n6r 124 16 cDNAs cDNAs NNPS cord-276978-xl4u7n6r 124 17 from from IN cord-276978-xl4u7n6r 124 18 template template NN cord-276978-xl4u7n6r 124 19 RNA RNA NNP cord-276978-xl4u7n6r 124 20 , , , cord-276978-xl4u7n6r 124 21 there there EX cord-276978-xl4u7n6r 124 22 might may MD cord-276978-xl4u7n6r 124 23 be be VB cord-276978-xl4u7n6r 124 24 some some DT cord-276978-xl4u7n6r 124 25 shorter short JJR cord-276978-xl4u7n6r 124 26 cDNA cdna NN cord-276978-xl4u7n6r 124 27 molecules molecule NNS cord-276978-xl4u7n6r 124 28 that that WDT cord-276978-xl4u7n6r 124 29 will will MD cord-276978-xl4u7n6r 124 30 be be VB cord-276978-xl4u7n6r 124 31 more more RBR cord-276978-xl4u7n6r 124 32 easily easily RB cord-276978-xl4u7n6r 124 33 amplified amplify VBN cord-276978-xl4u7n6r 124 34 in in IN cord-276978-xl4u7n6r 124 35 PCRs pcr NNS cord-276978-xl4u7n6r 124 36 . . . cord-276978-xl4u7n6r 125 1 It -PRON- PRP cord-276978-xl4u7n6r 125 2 is be VBZ cord-276978-xl4u7n6r 125 3 therefore therefore RB cord-276978-xl4u7n6r 125 4 important important JJ cord-276978-xl4u7n6r 125 5 to to TO cord-276978-xl4u7n6r 125 6 use use VB cord-276978-xl4u7n6r 125 7 a a DT cord-276978-xl4u7n6r 125 8 PCR PCR NNP cord-276978-xl4u7n6r 125 9 enzyme enzyme NN cord-276978-xl4u7n6r 125 10 with with IN cord-276978-xl4u7n6r 125 11 a a DT cord-276978-xl4u7n6r 125 12 proofreading proofreading NN cord-276978-xl4u7n6r 125 13 activity activity NN cord-276978-xl4u7n6r 125 14 , , , cord-276978-xl4u7n6r 125 15 in in IN cord-276978-xl4u7n6r 125 16 order order NN cord-276978-xl4u7n6r 125 17 to to TO cord-276978-xl4u7n6r 125 18 get get VB cord-276978-xl4u7n6r 125 19 PCR PCR NNP cord-276978-xl4u7n6r 125 20 products product NNS cord-276978-xl4u7n6r 125 21 from from IN cord-276978-xl4u7n6r 125 22 the the DT cord-276978-xl4u7n6r 125 23 longer long JJR cord-276978-xl4u7n6r 125 24 cDNA cdna NN cord-276978-xl4u7n6r 125 25 molecules molecule NNS cord-276978-xl4u7n6r 125 26 as as RB cord-276978-xl4u7n6r 125 27 well well RB cord-276978-xl4u7n6r 125 28 . . . cord-276978-xl4u7n6r 126 1 10 10 CD cord-276978-xl4u7n6r 126 2 . . . cord-276978-xl4u7n6r 127 1 The the DT cord-276978-xl4u7n6r 127 2 long long JJ cord-276978-xl4u7n6r 127 3 elongation elongation NN cord-276978-xl4u7n6r 127 4 step step NN cord-276978-xl4u7n6r 127 5 is be VBZ cord-276978-xl4u7n6r 127 6 chosen choose VBN cord-276978-xl4u7n6r 127 7 to to TO cord-276978-xl4u7n6r 127 8 allow allow VB cord-276978-xl4u7n6r 127 9 amplification amplification NN cord-276978-xl4u7n6r 127 10 of of IN cord-276978-xl4u7n6r 127 11 longer long JJR cord-276978-xl4u7n6r 127 12 cDNAs cdnas ADD cord-276978-xl4u7n6r 127 13 . . . cord-276978-xl4u7n6r 128 1 11 11 CD cord-276978-xl4u7n6r 128 2 . . . cord-276978-xl4u7n6r 129 1 As as IN cord-276978-xl4u7n6r 129 2 cDNA cdna NN cord-276978-xl4u7n6r 129 3 molecules molecule NNS cord-276978-xl4u7n6r 129 4 of of IN cord-276978-xl4u7n6r 129 5 different different JJ cord-276978-xl4u7n6r 129 6 lengths length NNS cord-276978-xl4u7n6r 129 7 are be VBP cord-276978-xl4u7n6r 129 8 generated generate VBN cord-276978-xl4u7n6r 129 9 during during IN cord-276978-xl4u7n6r 129 10 RT RT NNP cord-276978-xl4u7n6r 129 11 , , , cord-276978-xl4u7n6r 129 12 the the DT cord-276978-xl4u7n6r 129 13 5 5 CD cord-276978-xl4u7n6r 129 14 -RACE -RACE . cord-276978-xl4u7n6r 130 1 PCR PCR NNP cord-276978-xl4u7n6r 130 2 products product NNS cord-276978-xl4u7n6r 130 3 will will MD cord-276978-xl4u7n6r 130 4 be be VB cord-276978-xl4u7n6r 130 5 of of IN cord-276978-xl4u7n6r 130 6 different different JJ cord-276978-xl4u7n6r 130 7 lengths length NNS cord-276978-xl4u7n6r 130 8 , , , cord-276978-xl4u7n6r 130 9 so so CC cord-276978-xl4u7n6r 130 10 the the DT cord-276978-xl4u7n6r 130 11 5 5 CD cord-276978-xl4u7n6r 130 12 -RACE -race RB cord-276978-xl4u7n6r 130 13 abridged abridge VBN cord-276978-xl4u7n6r 130 14 anchor anchor NN cord-276978-xl4u7n6r 130 15 primer primer NN cord-276978-xl4u7n6r 130 16 can can MD cord-276978-xl4u7n6r 130 17 not not RB cord-276978-xl4u7n6r 130 18 be be VB cord-276978-xl4u7n6r 130 19 used use VBN cord-276978-xl4u7n6r 130 20 in in IN cord-276978-xl4u7n6r 130 21 cycle cycle NN cord-276978-xl4u7n6r 130 22 sequencing sequencing NN cord-276978-xl4u7n6r 130 23 . . . cord-276978-xl4u7n6r 131 1 As as IN cord-276978-xl4u7n6r 131 2 all all PDT cord-276978-xl4u7n6r 131 3 the the DT cord-276978-xl4u7n6r 131 4 5 5 CD cord-276978-xl4u7n6r 131 5 -RACE -RACE . cord-276978-xl4u7n6r 132 1 PCR PCR NNP cord-276978-xl4u7n6r 132 2 products product NNS cord-276978-xl4u7n6r 132 3 have have VBP cord-276978-xl4u7n6r 132 4 aligned align VBN cord-276978-xl4u7n6r 132 5 3 3 CD cord-276978-xl4u7n6r 132 6 -ends -end NNS cord-276978-xl4u7n6r 132 7 , , , cord-276978-xl4u7n6r 133 1 the the DT cord-276978-xl4u7n6r 133 2 coronavirus coronavirus NN cord-276978-xl4u7n6r 133 3 - - HYPH cord-276978-xl4u7n6r 133 4 specific specific JJ cord-276978-xl4u7n6r 133 5 5 5 CD cord-276978-xl4u7n6r 133 6 -RACE -race RB cord-276978-xl4u7n6r 133 7 reverse reverse JJ cord-276978-xl4u7n6r 133 8 PCR PCR NNP cord-276978-xl4u7n6r 133 9 primer primer NN cord-276978-xl4u7n6r 133 10 or or CC cord-276978-xl4u7n6r 133 11 , , , cord-276978-xl4u7n6r 133 12 preferably preferably RB cord-276978-xl4u7n6r 133 13 for for IN cord-276978-xl4u7n6r 133 14 increased increase VBN cord-276978-xl4u7n6r 133 15 specificity specificity NN cord-276978-xl4u7n6r 133 16 , , , cord-276978-xl4u7n6r 133 17 a a DT cord-276978-xl4u7n6r 133 18 primer primer NN cord-276978-xl4u7n6r 133 19 slightly slightly RB cord-276978-xl4u7n6r 133 20 upstream upstream RB cord-276978-xl4u7n6r 133 21 of of IN cord-276978-xl4u7n6r 133 22 this this DT cord-276978-xl4u7n6r 133 23 PCR PCR NNP cord-276978-xl4u7n6r 133 24 primer primer NN cord-276978-xl4u7n6r 133 25 is be VBZ cord-276978-xl4u7n6r 133 26 used use VBN cord-276978-xl4u7n6r 133 27 in in IN cord-276978-xl4u7n6r 133 28 cycle cycle NN cord-276978-xl4u7n6r 133 29 sequencing sequencing NN cord-276978-xl4u7n6r 133 30 . . . cord-276978-xl4u7n6r 134 1 12 12 CD cord-276978-xl4u7n6r 134 2 . . . cord-276978-xl4u7n6r 135 1 Using use VBG cord-276978-xl4u7n6r 135 2 this this DT cord-276978-xl4u7n6r 135 3 procedure procedure NN cord-276978-xl4u7n6r 135 4 , , , cord-276978-xl4u7n6r 135 5 one one PRP cord-276978-xl4u7n6r 135 6 should should MD cord-276978-xl4u7n6r 135 7 obtain obtain VB cord-276978-xl4u7n6r 135 8 at at IN cord-276978-xl4u7n6r 135 9 least least RBS cord-276978-xl4u7n6r 135 10 500 500 CD cord-276978-xl4u7n6r 135 11 nucleotides nucleotide NNS cord-276978-xl4u7n6r 135 12 , , , cord-276978-xl4u7n6r 135 13 which which WDT cord-276978-xl4u7n6r 135 14 would would MD cord-276978-xl4u7n6r 135 15 allow allow VB cord-276978-xl4u7n6r 135 16 the the DT cord-276978-xl4u7n6r 135 17 design design NN cord-276978-xl4u7n6r 135 18 of of IN cord-276978-xl4u7n6r 135 19 new new JJ cord-276978-xl4u7n6r 135 20 primers primer NNS cord-276978-xl4u7n6r 135 21 both both CC cord-276978-xl4u7n6r 135 22 in in IN cord-276978-xl4u7n6r 135 23 sense sense NN cord-276978-xl4u7n6r 135 24 direction direction NN cord-276978-xl4u7n6r 135 25 for for IN cord-276978-xl4u7n6r 135 26 sequence sequence NN cord-276978-xl4u7n6r 135 27 verification verification NN cord-276978-xl4u7n6r 135 28 and and CC cord-276978-xl4u7n6r 135 29 reverse reverse JJ cord-276978-xl4u7n6r 135 30 direction direction NN cord-276978-xl4u7n6r 135 31 for for IN cord-276978-xl4u7n6r 135 32 acquisition acquisition NN cord-276978-xl4u7n6r 135 33 of of IN cord-276978-xl4u7n6r 135 34 new new JJ cord-276978-xl4u7n6r 135 35 sequence sequence NN cord-276978-xl4u7n6r 135 36 data datum NNS cord-276978-xl4u7n6r 135 37 toward toward IN cord-276978-xl4u7n6r 135 38 the the DT cord-276978-xl4u7n6r 135 39 5 5 CD cord-276978-xl4u7n6r 135 40 -end -end : cord-276978-xl4u7n6r 135 41 of of IN cord-276978-xl4u7n6r 135 42 the the DT cord-276978-xl4u7n6r 135 43 genome genome NN cord-276978-xl4u7n6r 135 44 in in IN cord-276978-xl4u7n6r 135 45 a a DT cord-276978-xl4u7n6r 135 46 primer primer NN cord-276978-xl4u7n6r 135 47 walking walking NN cord-276978-xl4u7n6r 135 48 strategy strategy NN cord-276978-xl4u7n6r 135 49 . . . cord-276978-xl4u7n6r 136 1 The the DT cord-276978-xl4u7n6r 136 2 new new JJ cord-276978-xl4u7n6r 136 3 primers primer NNS cord-276978-xl4u7n6r 136 4 can can MD cord-276978-xl4u7n6r 136 5 be be VB cord-276978-xl4u7n6r 136 6 used use VBN cord-276978-xl4u7n6r 136 7 directly directly RB cord-276978-xl4u7n6r 136 8 in in IN cord-276978-xl4u7n6r 136 9 step step NN cord-276978-xl4u7n6r 136 10 5 5 CD cord-276978-xl4u7n6r 136 11 of of IN cord-276978-xl4u7n6r 136 12 the the DT cord-276978-xl4u7n6r 136 13 5 5 CD cord-276978-xl4u7n6r 136 14 -RACE -race NN cord-276978-xl4u7n6r 136 15 procedure procedure NN cord-276978-xl4u7n6r 136 16 , , , cord-276978-xl4u7n6r 136 17 if if IN cord-276978-xl4u7n6r 136 18 all all PDT cord-276978-xl4u7n6r 136 19 the the DT cord-276978-xl4u7n6r 136 20 steps step NNS cord-276978-xl4u7n6r 136 21 have have VBP cord-276978-xl4u7n6r 136 22 been be VBN cord-276978-xl4u7n6r 136 23 optimized optimize VBN cord-276978-xl4u7n6r 136 24 for for IN cord-276978-xl4u7n6r 136 25 longrange longrange NNP cord-276978-xl4u7n6r 136 26 cDNA cDNA NNP cord-276978-xl4u7n6r 136 27 synthesis synthesis NNP cord-276978-xl4u7n6r 136 28 . . . cord-276978-xl4u7n6r 137 1 However however RB cord-276978-xl4u7n6r 137 2 , , , cord-276978-xl4u7n6r 137 3 usually usually RB cord-276978-xl4u7n6r 137 4 no no DT cord-276978-xl4u7n6r 137 5 more more JJR cord-276978-xl4u7n6r 137 6 than than IN cord-276978-xl4u7n6r 137 7 2000 2000 CD cord-276978-xl4u7n6r 137 8 - - SYM cord-276978-xl4u7n6r 137 9 3000 3000 CD cord-276978-xl4u7n6r 137 10 nucleotides nucleotide NNS cord-276978-xl4u7n6r 137 11 are be VBP cord-276978-xl4u7n6r 137 12 efficiently efficiently RB cord-276978-xl4u7n6r 137 13 sequenced sequence VBN cord-276978-xl4u7n6r 137 14 from from IN cord-276978-xl4u7n6r 137 15 the the DT cord-276978-xl4u7n6r 137 16 initial initial JJ cord-276978-xl4u7n6r 137 17 5 5 CD cord-276978-xl4u7n6r 137 18 -RACE -race NN cord-276978-xl4u7n6r 137 19 - - HYPH cord-276978-xl4u7n6r 137 20 RT RT NNP cord-276978-xl4u7n6r 137 21 , , , cord-276978-xl4u7n6r 137 22 and and CC cord-276978-xl4u7n6r 137 23 the the DT cord-276978-xl4u7n6r 137 24 whole whole JJ cord-276978-xl4u7n6r 137 25 5 5 CD cord-276978-xl4u7n6r 137 26 -RACE -race NN cord-276978-xl4u7n6r 137 27 procedure procedure NN cord-276978-xl4u7n6r 137 28 has have VBZ cord-276978-xl4u7n6r 137 29 to to TO cord-276978-xl4u7n6r 137 30 be be VB cord-276978-xl4u7n6r 137 31 repeated repeat VBN cord-276978-xl4u7n6r 137 32 with with IN cord-276978-xl4u7n6r 137 33 a a DT cord-276978-xl4u7n6r 137 34 primer primer NN cord-276978-xl4u7n6r 137 35 for for IN cord-276978-xl4u7n6r 137 36 cDNA cdna NN cord-276978-xl4u7n6r 137 37 synthesis synthesis NN cord-276978-xl4u7n6r 137 38 as as RB cord-276978-xl4u7n6r 137 39 upstream upstream RB cord-276978-xl4u7n6r 137 40 as as IN cord-276978-xl4u7n6r 137 41 possible possible JJ cord-276978-xl4u7n6r 137 42 . . . cord-276978-xl4u7n6r 138 1 BigDye BigDye NNP cord-276978-xl4u7n6r 138 2 Terminator Terminator NNP cord-276978-xl4u7n6r 138 3 Cycle Cycle NNP cord-276978-xl4u7n6r 138 4 Sequencing Sequencing NNP cord-276978-xl4u7n6r 138 5 kit kit NN cord-276978-xl4u7n6r 138 6 version version NN cord-276978-xl4u7n6r 138 7 1.1 1.1 CD cord-276978-xl4u7n6r 138 8 or or CC cord-276978-xl4u7n6r 138 9 version version NN cord-276978-xl4u7n6r 138 10 3.1 3.1 CD cord-276978-xl4u7n6r 138 11 ( ( -LRB- cord-276978-xl4u7n6r 138 12 Applied Applied NNP cord-276978-xl4u7n6r 138 13 Biosystems Biosystems NNP cord-276978-xl4u7n6r 138 14 ) ) -RRB- cord-276978-xl4u7n6r 138 15 is be VBZ cord-276978-xl4u7n6r 138 16 used use VBN cord-276978-xl4u7n6r 138 17 for for IN cord-276978-xl4u7n6r 138 18 sequencing sequencing NN cord-276978-xl4u7n6r 138 19 of of IN cord-276978-xl4u7n6r 138 20 short short JJ cord-276978-xl4u7n6r 138 21 ( ( -LRB- cord-276978-xl4u7n6r 138 22 from from IN cord-276978-xl4u7n6r 138 23 initial initial JJ cord-276978-xl4u7n6r 138 24 PCR PCR NNP cord-276978-xl4u7n6r 138 25 ) ) -RRB- cord-276978-xl4u7n6r 138 26 or or CC cord-276978-xl4u7n6r 138 27 long long JJ cord-276978-xl4u7n6r 138 28 ( ( -LRB- cord-276978-xl4u7n6r 138 29 5 5 CD cord-276978-xl4u7n6r 138 30 -RACE -race NN cord-276978-xl4u7n6r 138 31 PCR PCR NNP cord-276978-xl4u7n6r 138 32 ) ) -RRB- cord-276978-xl4u7n6r 138 33 PCR PCR NNP cord-276978-xl4u7n6r 138 34 products product NNS cord-276978-xl4u7n6r 138 35 Cycle cycle NN cord-276978-xl4u7n6r 138 36 sequencing sequencing NN cord-276978-xl4u7n6r 138 37 reaction reaction NN cord-276978-xl4u7n6r 138 38 is be VBZ cord-276978-xl4u7n6r 138 39 performed perform VBN cord-276978-xl4u7n6r 138 40 on on IN cord-276978-xl4u7n6r 138 41 an an DT cord-276978-xl4u7n6r 138 42 MJ MJ NNP cord-276978-xl4u7n6r 138 43 Research Research NNP cord-276978-xl4u7n6r 138 44 thermocycler thermocycler VBD cord-276978-xl4u7n6r 138 45 3130xl 3130xl CD cord-276978-xl4u7n6r 138 46 Genetic Genetic NNP cord-276978-xl4u7n6r 138 47 Analyser Analyser NNP cord-276978-xl4u7n6r 138 48 for for IN cord-276978-xl4u7n6r 138 49 sequencing sequencing NN cord-276978-xl4u7n6r 138 50 ( ( -LRB- cord-276978-xl4u7n6r 138 51 Applied Applied NNP cord-276978-xl4u7n6r 138 52 Biosystems Biosystems NNP cord-276978-xl4u7n6r 138 53 ) ) -RRB- cord-276978-xl4u7n6r 139 1 All all DT cord-276978-xl4u7n6r 139 2 reagents reagent NNS cord-276978-xl4u7n6r 139 3 for for IN cord-276978-xl4u7n6r 139 4 RT RT NNP cord-276978-xl4u7n6r 139 5 are be VBP cord-276978-xl4u7n6r 139 6 described describe VBN cord-276978-xl4u7n6r 139 7 in in IN cord-276978-xl4u7n6r 139 8 Section section NN cord-276978-xl4u7n6r 139 9 2.1.1 2.1.1 NN cord-276978-xl4u7n6r 139 10 For for IN cord-276978-xl4u7n6r 139 11 RNase rnase NN cord-276978-xl4u7n6r 139 12 treatment treatment NN cord-276978-xl4u7n6r 139 13 of of IN cord-276978-xl4u7n6r 139 14 newly newly RB cord-276978-xl4u7n6r 139 15 synthesized synthesize VBN cord-276978-xl4u7n6r 139 16 cDNA cdna NN cord-276978-xl4u7n6r 139 17 , , , cord-276978-xl4u7n6r 139 18 a a DT cord-276978-xl4u7n6r 139 19 master master NN cord-276978-xl4u7n6r 139 20 mix mix NN cord-276978-xl4u7n6r 139 21 of of IN cord-276978-xl4u7n6r 139 22 two two CD cord-276978-xl4u7n6r 139 23 - - HYPH cord-276978-xl4u7n6r 139 24 thirds third NNS cord-276978-xl4u7n6r 139 25 part part NN cord-276978-xl4u7n6r 139 26 RNase RNase NNP cord-276978-xl4u7n6r 139 27 H h NN cord-276978-xl4u7n6r 139 28 ( ( -LRB- cord-276978-xl4u7n6r 139 29 2 2 CD cord-276978-xl4u7n6r 139 30 U u NN cord-276978-xl4u7n6r 139 31 / / SYM cord-276978-xl4u7n6r 139 32 l l NN cord-276978-xl4u7n6r 139 33 ) ) -RRB- cord-276978-xl4u7n6r 139 34 ( ( -LRB- cord-276978-xl4u7n6r 139 35 Invitrogen Invitrogen NNP cord-276978-xl4u7n6r 139 36 ) ) -RRB- cord-276978-xl4u7n6r 139 37 and and CC cord-276978-xl4u7n6r 139 38 one one CD cord-276978-xl4u7n6r 139 39 - - HYPH cord-276978-xl4u7n6r 139 40 third third NN cord-276978-xl4u7n6r 139 41 part part NN cord-276978-xl4u7n6r 139 42 RNase RNase NNP cord-276978-xl4u7n6r 139 43 T1 T1 NNP cord-276978-xl4u7n6r 139 44 ( ( -LRB- cord-276978-xl4u7n6r 139 45 100 100 CD cord-276978-xl4u7n6r 139 46 - - SYM cord-276978-xl4u7n6r 139 47 150 150 CD cord-276978-xl4u7n6r 139 48 U U NNP cord-276978-xl4u7n6r 139 49 / / SYM cord-276978-xl4u7n6r 139 50 l l NN cord-276978-xl4u7n6r 139 51 ) ) -RRB- cord-276978-xl4u7n6r 139 52 ( ( -LRB- cord-276978-xl4u7n6r 139 53 Roche Roche NNP cord-276978-xl4u7n6r 139 54 ) ) -RRB- cord-276978-xl4u7n6r 139 55 is be VBZ cord-276978-xl4u7n6r 139 56 made make VBN cord-276978-xl4u7n6r 139 57 . . . cord-276978-xl4u7n6r 140 1 The the DT cord-276978-xl4u7n6r 140 2 mix mix NN cord-276978-xl4u7n6r 140 3 is be VBZ cord-276978-xl4u7n6r 140 4 made make VBN cord-276978-xl4u7n6r 140 5 fresh fresh JJ cord-276978-xl4u7n6r 140 6 , , , cord-276978-xl4u7n6r 140 7 and and CC cord-276978-xl4u7n6r 140 8 stored store VBN cord-276978-xl4u7n6r 140 9 at at IN cord-276978-xl4u7n6r 140 10 4 4 CD cord-276978-xl4u7n6r 140 11 • • NN cord-276978-xl4u7n6r 140 12 C C NNP cord-276978-xl4u7n6r 140 13 until until IN cord-276978-xl4u7n6r 140 14 use use NN cord-276978-xl4u7n6r 140 15 QIAquick QIAquick NNP cord-276978-xl4u7n6r 140 16 PCR PCR NNP cord-276978-xl4u7n6r 140 17 purification purification NN cord-276978-xl4u7n6r 140 18 kit kit NN cord-276978-xl4u7n6r 140 19 ( ( -LRB- cord-276978-xl4u7n6r 140 20 Qiagen Qiagen NNP cord-276978-xl4u7n6r 140 21 ) ) -RRB- cord-276978-xl4u7n6r 141 1 cDNA cDNA NNP cord-276978-xl4u7n6r 141 2 yields yield NNS cord-276978-xl4u7n6r 141 3 are be VBP cord-276978-xl4u7n6r 141 4 measured measure VBN cord-276978-xl4u7n6r 141 5 using use VBG cord-276978-xl4u7n6r 141 6 a a DT cord-276978-xl4u7n6r 141 7 NanoDrop NanoDrop NNP cord-276978-xl4u7n6r 141 8 Spectrophotometer Spectrophotometer NNP cord-276978-xl4u7n6r 141 9 Tailing tailing NN cord-276978-xl4u7n6r 141 10 reagents reagent NNS cord-276978-xl4u7n6r 141 11 : : : cord-276978-xl4u7n6r 141 12 Terminal terminal JJ cord-276978-xl4u7n6r 141 13 deoxynucleotidyl deoxynucleotidyl NN cord-276978-xl4u7n6r 141 14 transferase transferase NN cord-276978-xl4u7n6r 141 15 ( ( -LRB- cord-276978-xl4u7n6r 141 16 TdT TdT NNP cord-276978-xl4u7n6r 141 17 ) ) -RRB- cord-276978-xl4u7n6r 141 18 ( ( -LRB- cord-276978-xl4u7n6r 141 19 15 15 CD cord-276978-xl4u7n6r 141 20 U U NNP cord-276978-xl4u7n6r 141 21 / / SYM cord-276978-xl4u7n6r 141 22 l l NN cord-276978-xl4u7n6r 141 23 ) ) -RRB- cord-276978-xl4u7n6r 141 24 , , , cord-276978-xl4u7n6r 141 25 5X 5x CD cord-276978-xl4u7n6r 141 26 TdT tdt NN cord-276978-xl4u7n6r 141 27 buffer buffer NN cord-276978-xl4u7n6r 141 28 ( ( -LRB- cord-276978-xl4u7n6r 141 29 0.5 0.5 CD cord-276978-xl4u7n6r 141 30 M m NN cord-276978-xl4u7n6r 141 31 potassium potassium NN cord-276978-xl4u7n6r 141 32 cacodylate cacodylate NN cord-276978-xl4u7n6r 141 33 , , , cord-276978-xl4u7n6r 141 34 10 10 CD cord-276978-xl4u7n6r 141 35 mM mm CD cord-276978-xl4u7n6r 141 36 CoCl CoCl NNP cord-276978-xl4u7n6r 141 37 2 2 CD cord-276978-xl4u7n6r 141 38 , , , cord-276978-xl4u7n6r 141 39 1 1 CD cord-276978-xl4u7n6r 141 40 mM mm CD cord-276978-xl4u7n6r 141 41 DTT DTT NNP cord-276978-xl4u7n6r 141 42 ) ) -RRB- cord-276978-xl4u7n6r 141 43 , , , cord-276978-xl4u7n6r 141 44 and and CC cord-276978-xl4u7n6r 141 45 dCTP dctp JJ cord-276978-xl4u7n6r 141 46 Sense sense NN cord-276978-xl4u7n6r 141 47 primer primer NN cord-276978-xl4u7n6r 141 48 in in IN cord-276978-xl4u7n6r 141 49 the the DT cord-276978-xl4u7n6r 141 50 5 5 CD cord-276978-xl4u7n6r 141 51 -RACE -race NN cord-276978-xl4u7n6r 141 52 PCR PCR NNP cord-276978-xl4u7n6r 141 53 : : : cord-276978-xl4u7n6r 141 54 5 5 LS cord-276978-xl4u7n6r 141 55 -RACE -race RB cord-276978-xl4u7n6r 141 56 abridged abridge VBN cord-276978-xl4u7n6r 141 57 anchor anchor NN cord-276978-xl4u7n6r 141 58 primer primer NN cord-276978-xl4u7n6r 141 59 PCR PCR NNP cord-276978-xl4u7n6r 141 60 enzyme enzyme NN cord-276978-xl4u7n6r 141 61 used use VBN cord-276978-xl4u7n6r 141 62 in in IN cord-276978-xl4u7n6r 141 63 the the DT cord-276978-xl4u7n6r 141 64 long long JJ cord-276978-xl4u7n6r 141 65 - - HYPH cord-276978-xl4u7n6r 141 66 range range NN cord-276978-xl4u7n6r 141 67 5 5 CD cord-276978-xl4u7n6r 141 68 -RACE -race NN cord-276978-xl4u7n6r 141 69 PCR PCR NNP cord-276978-xl4u7n6r 141 70 : : : cord-276978-xl4u7n6r 141 71 BD BD NNP cord-276978-xl4u7n6r 141 72 Advantage Advantage NNP cord-276978-xl4u7n6r 141 73 2 2 CD cord-276978-xl4u7n6r 141 74 Taq taq NN cord-276978-xl4u7n6r 141 75 polymerase polymerase NN cord-276978-xl4u7n6r 141 76 with with IN cord-276978-xl4u7n6r 141 77 10X 10X JJR cord-276978-xl4u7n6r 141 78 BD BD NNP cord-276978-xl4u7n6r 141 79 Advantage Advantage NNP cord-276978-xl4u7n6r 141 80 2 2 CD cord-276978-xl4u7n6r 141 81 PCR PCR NNP cord-276978-xl4u7n6r 141 82 buffer buffer NN cord-276978-xl4u7n6r 141 83 ( ( -LRB- cord-276978-xl4u7n6r 141 84 400 400 CD cord-276978-xl4u7n6r 141 85 mM mm CD cord-276978-xl4u7n6r 141 86 Tricine Tricine NNP cord-276978-xl4u7n6r 141 87 - - HYPH cord-276978-xl4u7n6r 141 88 KOH KOH NNP cord-276978-xl4u7n6r 141 89 , , , cord-276978-xl4u7n6r 141 90 150 150 CD cord-276978-xl4u7n6r 141 91 mM mm CD cord-276978-xl4u7n6r 141 92 KOAc KOAc NNS cord-276978-xl4u7n6r 141 93 , , , cord-276978-xl4u7n6r 141 94 35 35 CD cord-276978-xl4u7n6r 141 95 mM mm CD cord-276978-xl4u7n6r 141 96 Mg(OAc Mg(OAc NNS cord-276978-xl4u7n6r 141 97 ) ) -RRB- cord-276978-xl4u7n6r 141 98 2 2 CD cord-276978-xl4u7n6r 141 99 , , , cord-276978-xl4u7n6r 141 100 37.5 37.5 CD cord-276978-xl4u7n6r 141 101 g g NN cord-276978-xl4u7n6r 141 102 / / SYM cord-276978-xl4u7n6r 141 103 l l NNP cord-276978-xl4u7n6r 141 104 BSA BSA NNP cord-276978-xl4u7n6r 141 105 , , , cord-276978-xl4u7n6r 141 106 0.05 0.05 CD cord-276978-xl4u7n6r 141 107 % % NN cord-276978-xl4u7n6r 141 108 Tween Tween NNP cord-276978-xl4u7n6r 141 109 20 20 CD cord-276978-xl4u7n6r 141 110 , , , cord-276978-xl4u7n6r 141 111 and and CC cord-276978-xl4u7n6r 141 112 0.05 0.05 CD cord-276978-xl4u7n6r 141 113 % % NN cord-276978-xl4u7n6r 141 114 Nonidet Nonidet NNP cord-276978-xl4u7n6r 141 115 - - HYPH cord-276978-xl4u7n6r 141 116 P40 P40 NNP cord-276978-xl4u7n6r 141 117 ) ) -RRB- cord-276978-xl4u7n6r 141 118 ( ( -LRB- cord-276978-xl4u7n6r 141 119 Clontech Clontech NNP cord-276978-xl4u7n6r 141 120 ) ) -RRB- cord-276978-xl4u7n6r 142 1 A a DT cord-276978-xl4u7n6r 142 2 common common JJ cord-276978-xl4u7n6r 142 3 RNA RNA NNP cord-276978-xl4u7n6r 142 4 motif motif NN cord-276978-xl4u7n6r 142 5 in in IN cord-276978-xl4u7n6r 142 6 the the DT cord-276978-xl4u7n6r 142 7 3 3 CD cord-276978-xl4u7n6r 142 8 ' ' NN cord-276978-xl4u7n6r 142 9 end end NN cord-276978-xl4u7n6r 142 10 of of IN cord-276978-xl4u7n6r 142 11 the the DT cord-276978-xl4u7n6r 142 12 genomes genome NNS cord-276978-xl4u7n6r 142 13 of of IN cord-276978-xl4u7n6r 142 14 astroviruses astroviruse NNS cord-276978-xl4u7n6r 142 15 , , , cord-276978-xl4u7n6r 142 16 avian avian JJ cord-276978-xl4u7n6r 142 17 infectious infectious JJ cord-276978-xl4u7n6r 142 18 bronchitis bronchitis NN cord-276978-xl4u7n6r 142 19 virus virus NN cord-276978-xl4u7n6r 142 20 and and CC cord-276978-xl4u7n6r 142 21 an an DT cord-276978-xl4u7n6r 142 22 equine equine JJ cord-276978-xl4u7n6r 142 23 rhinovirus rhinovirus NN cord-276978-xl4u7n6r 143 1 The the DT cord-276978-xl4u7n6r 143 2 structure structure NN cord-276978-xl4u7n6r 143 3 of of IN cord-276978-xl4u7n6r 143 4 a a DT cord-276978-xl4u7n6r 143 5 rigorously rigorously RB cord-276978-xl4u7n6r 143 6 conserved conserve VBN cord-276978-xl4u7n6r 143 7 RNA RNA NNP cord-276978-xl4u7n6r 143 8 element element NN cord-276978-xl4u7n6r 143 9 within within IN cord-276978-xl4u7n6r 143 10 the the DT cord-276978-xl4u7n6r 143 11 SARS SARS NNP cord-276978-xl4u7n6r 143 12 virus virus NN cord-276978-xl4u7n6r 143 13 genome genome NN cord-276978-xl4u7n6r 143 14 Molecular molecular JJ cord-276978-xl4u7n6r 143 15 identification identification NN cord-276978-xl4u7n6r 143 16 and and CC cord-276978-xl4u7n6r 143 17 characterization characterization NN cord-276978-xl4u7n6r 143 18 of of IN cord-276978-xl4u7n6r 143 19 novel novel NN cord-276978-xl4u7n6r 143 20 coronaviruses coronaviruse NNS cord-276978-xl4u7n6r 143 21 infecting infect VBG cord-276978-xl4u7n6r 143 22 graylag graylag NNP cord-276978-xl4u7n6r 143 23 geese goose NNS cord-276978-xl4u7n6r 143 24 ( ( -LRB- cord-276978-xl4u7n6r 143 25 Anser Anser NNP cord-276978-xl4u7n6r 143 26 anser anser NNP cord-276978-xl4u7n6r 143 27 ) ) -RRB- cord-276978-xl4u7n6r 143 28 , , , cord-276978-xl4u7n6r 143 29 feral feral JJ cord-276978-xl4u7n6r 143 30 pigeons pigeon NNS cord-276978-xl4u7n6r 143 31 ( ( -LRB- cord-276978-xl4u7n6r 143 32 Columbia Columbia NNP cord-276978-xl4u7n6r 143 33 livia livia NNP cord-276978-xl4u7n6r 143 34 ) ) -RRB- cord-276978-xl4u7n6r 143 35 and and CC cord-276978-xl4u7n6r 143 36 mallards mallard NNS cord-276978-xl4u7n6r 143 37 ( ( -LRB- cord-276978-xl4u7n6r 143 38 Anas Anas NNP cord-276978-xl4u7n6r 143 39 platyrhynchos platyrhynchos NN cord-276978-xl4u7n6r 143 40 ) ) -RRB- cord-276978-xl4u7n6r 144 1 A a DT cord-276978-xl4u7n6r 144 2 novel novel JJ cord-276978-xl4u7n6r 144 3 coronavirus coronavirus NN cord-276978-xl4u7n6r 144 4 associated associate VBN cord-276978-xl4u7n6r 144 5 with with IN cord-276978-xl4u7n6r 144 6 severe severe JJ cord-276978-xl4u7n6r 144 7 acute acute JJ cord-276978-xl4u7n6r 144 8 respiratory respiratory JJ cord-276978-xl4u7n6r 144 9 syndrome syndrome NN cord-276978-xl4u7n6r 144 10 Viral viral JJ cord-276978-xl4u7n6r 144 11 discovery discovery NN cord-276978-xl4u7n6r 144 12 and and CC cord-276978-xl4u7n6r 144 13 sequence sequence NN cord-276978-xl4u7n6r 144 14 recovery recovery NN cord-276978-xl4u7n6r 144 15 using use VBG cord-276978-xl4u7n6r 144 16 Phylogenetic phylogenetic JJ cord-276978-xl4u7n6r 144 17 analysis analysis NN cord-276978-xl4u7n6r 144 18 of of IN cord-276978-xl4u7n6r 144 19 a a DT cord-276978-xl4u7n6r 144 20 highly highly RB cord-276978-xl4u7n6r 144 21 conserved conserve VBN cord-276978-xl4u7n6r 144 22 region region NN cord-276978-xl4u7n6r 144 23 of of IN cord-276978-xl4u7n6r 144 24 the the DT cord-276978-xl4u7n6r 144 25 polymerase polymerase NN cord-276978-xl4u7n6r 144 26 gene gene NN cord-276978-xl4u7n6r 144 27 from from IN cord-276978-xl4u7n6r 144 28 11 11 CD cord-276978-xl4u7n6r 144 29 coronaviruses coronaviruse NNS cord-276978-xl4u7n6r 144 30 and and CC cord-276978-xl4u7n6r 144 31 development development NN cord-276978-xl4u7n6r 144 32 of of IN cord-276978-xl4u7n6r 144 33 a a DT cord-276978-xl4u7n6r 144 34 consensus consensus NN cord-276978-xl4u7n6r 144 35 polymerase polymerase NN cord-276978-xl4u7n6r 144 36 chain chain NN cord-276978-xl4u7n6r 144 37 reaction reaction NN cord-276978-xl4u7n6r 144 38 assay assay NN cord-276978-xl4u7n6r 144 39 Virus virus NN cord-276978-xl4u7n6r 144 40 Res Res NNP cord-276978-xl4u7n6r 144 41 Complete complete JJ cord-276978-xl4u7n6r 144 42 genomic genomic JJ cord-276978-xl4u7n6r 144 43 sequences sequence NNS cord-276978-xl4u7n6r 144 44 of of IN cord-276978-xl4u7n6r 144 45 astroviruses astroviruse NNS cord-276978-xl4u7n6r 144 46 from from IN cord-276978-xl4u7n6r 144 47 sheep sheep NN cord-276978-xl4u7n6r 144 48 and and CC cord-276978-xl4u7n6r 144 49 turkey turkey NNP cord-276978-xl4u7n6r 144 50 : : : cord-276978-xl4u7n6r 144 51 comparison comparison NN cord-276978-xl4u7n6r 144 52 with with IN cord-276978-xl4u7n6r 144 53 related related JJ cord-276978-xl4u7n6r 144 54 viruses virus NNS cord-276978-xl4u7n6r 144 55 Virus virus NN cord-276978-xl4u7n6r 144 56 Res res NN