id sid tid token lemma pos cord-265978-i0fu8e0p 1 1 key key JJ cord-265978-i0fu8e0p 1 2 : : : cord-265978-i0fu8e0p 1 3 cord-265978-i0fu8e0p cord-265978-i0fu8e0p NN cord-265978-i0fu8e0p 1 4 authors author NNS cord-265978-i0fu8e0p 1 5 : : : cord-265978-i0fu8e0p 1 6 Amer Amer NNP cord-265978-i0fu8e0p 1 7 , , , cord-265978-i0fu8e0p 1 8 Haitham Haitham NNP cord-265978-i0fu8e0p 1 9 M. M. NNP cord-265978-i0fu8e0p 1 10 ; ; : cord-265978-i0fu8e0p 1 11 Almajhdi Almajhdi NNP cord-265978-i0fu8e0p 1 12 , , , cord-265978-i0fu8e0p 1 13 Fahad Fahad NNP cord-265978-i0fu8e0p 1 14 N. N. NNP cord-265978-i0fu8e0p 1 15 title title NN cord-265978-i0fu8e0p 1 16 : : : cord-265978-i0fu8e0p 1 17 Development development NN cord-265978-i0fu8e0p 1 18 of of IN cord-265978-i0fu8e0p 1 19 a a DT cord-265978-i0fu8e0p 1 20 SYBR SYBR NNP cord-265978-i0fu8e0p 1 21 Green Green NNP cord-265978-i0fu8e0p 1 22 I -PRON- PRP cord-265978-i0fu8e0p 1 23 based base VBD cord-265978-i0fu8e0p 1 24 real real JJ cord-265978-i0fu8e0p 1 25 - - HYPH cord-265978-i0fu8e0p 1 26 time time NN cord-265978-i0fu8e0p 1 27 RT RT NNP cord-265978-i0fu8e0p 1 28 - - HYPH cord-265978-i0fu8e0p 1 29 PCR PCR NNP cord-265978-i0fu8e0p 1 30 assay assay NN cord-265978-i0fu8e0p 1 31 for for IN cord-265978-i0fu8e0p 1 32 detection detection NN cord-265978-i0fu8e0p 1 33 and and CC cord-265978-i0fu8e0p 1 34 quantification quantification NN cord-265978-i0fu8e0p 1 35 of of IN cord-265978-i0fu8e0p 1 36 bovine bovine JJ cord-265978-i0fu8e0p 1 37 coronavirus coronavirus NN cord-265978-i0fu8e0p 1 38 date date NN cord-265978-i0fu8e0p 1 39 : : : cord-265978-i0fu8e0p 1 40 2011 2011 CD cord-265978-i0fu8e0p 1 41 - - SYM cord-265978-i0fu8e0p 1 42 06 06 CD cord-265978-i0fu8e0p 1 43 - - SYM cord-265978-i0fu8e0p 1 44 30 30 CD cord-265978-i0fu8e0p 1 45 journal journal NN cord-265978-i0fu8e0p 1 46 : : : cord-265978-i0fu8e0p 2 1 Molecular molecular JJ cord-265978-i0fu8e0p 2 2 and and CC cord-265978-i0fu8e0p 2 3 Cellular Cellular NNP cord-265978-i0fu8e0p 2 4 Probes Probes NNPS cord-265978-i0fu8e0p 2 5 DOI DOI NNP cord-265978-i0fu8e0p 2 6 : : : cord-265978-i0fu8e0p 2 7 10.1016 10.1016 CD cord-265978-i0fu8e0p 2 8 / / SYM cord-265978-i0fu8e0p 2 9 j.mcp.2011.03.001 j.mcp.2011.03.001 JJ cord-265978-i0fu8e0p 2 10 sha sha NNP cord-265978-i0fu8e0p 2 11 : : : cord-265978-i0fu8e0p 3 1 75441498b30257e8d2ce87c2eb4daf445fd11a4f 75441498b30257e8d2ce87c2eb4daf445fd11a4f CD cord-265978-i0fu8e0p 3 2 doc_id doc_id CD cord-265978-i0fu8e0p 4 1 : : : cord-265978-i0fu8e0p 4 2 265978 265978 CD cord-265978-i0fu8e0p 4 3 cord_uid cord_uid NNS cord-265978-i0fu8e0p 4 4 : : : cord-265978-i0fu8e0p 5 1 i0fu8e0p i0fu8e0p NNP cord-265978-i0fu8e0p 6 1 Abstract Abstract NNP cord-265978-i0fu8e0p 6 2 A a DT cord-265978-i0fu8e0p 6 3 novel novel JJ cord-265978-i0fu8e0p 6 4 two two CD cord-265978-i0fu8e0p 6 5 - - HYPH cord-265978-i0fu8e0p 6 6 step step NN cord-265978-i0fu8e0p 6 7 , , , cord-265978-i0fu8e0p 6 8 SYBR SYBR NNP cord-265978-i0fu8e0p 6 9 Green Green NNP cord-265978-i0fu8e0p 6 10 I -PRON- PRP cord-265978-i0fu8e0p 6 11 based base VBD cord-265978-i0fu8e0p 6 12 real real JJ cord-265978-i0fu8e0p 6 13 - - HYPH cord-265978-i0fu8e0p 6 14 time time NN cord-265978-i0fu8e0p 6 15 RT RT NNP cord-265978-i0fu8e0p 6 16 - - HYPH cord-265978-i0fu8e0p 6 17 PCR PCR NNP cord-265978-i0fu8e0p 6 18 assay assay NN cord-265978-i0fu8e0p 6 19 was be VBD cord-265978-i0fu8e0p 6 20 developed develop VBN cord-265978-i0fu8e0p 6 21 for for IN cord-265978-i0fu8e0p 6 22 detection detection NN cord-265978-i0fu8e0p 6 23 and and CC cord-265978-i0fu8e0p 6 24 quantification quantification NN cord-265978-i0fu8e0p 6 25 of of IN cord-265978-i0fu8e0p 6 26 BCoV BCoV NNP cord-265978-i0fu8e0p 6 27 using use VBG cord-265978-i0fu8e0p 6 28 ABI ABI NNP cord-265978-i0fu8e0p 6 29 PRISM PRISM NNP cord-265978-i0fu8e0p 6 30 7500 7500 CD cord-265978-i0fu8e0p 6 31 sequence sequence NN cord-265978-i0fu8e0p 6 32 detection detection NN cord-265978-i0fu8e0p 6 33 system system NN cord-265978-i0fu8e0p 6 34 . . . cord-265978-i0fu8e0p 7 1 The the DT cord-265978-i0fu8e0p 7 2 assay assay NN cord-265978-i0fu8e0p 7 3 was be VBD cord-265978-i0fu8e0p 7 4 carried carry VBN cord-265978-i0fu8e0p 7 5 out out RP cord-265978-i0fu8e0p 7 6 using use VBG cord-265978-i0fu8e0p 7 7 two two CD cord-265978-i0fu8e0p 7 8 sets set NNS cord-265978-i0fu8e0p 7 9 of of IN cord-265978-i0fu8e0p 7 10 primers primer NNS cord-265978-i0fu8e0p 7 11 designed design VBN cord-265978-i0fu8e0p 7 12 to to TO cord-265978-i0fu8e0p 7 13 amplify amplify VB cord-265978-i0fu8e0p 7 14 highly highly RB cord-265978-i0fu8e0p 7 15 conserved conserve VBN cord-265978-i0fu8e0p 7 16 sequences sequence NNS cord-265978-i0fu8e0p 7 17 of of IN cord-265978-i0fu8e0p 7 18 the the DT cord-265978-i0fu8e0p 7 19 nucleocapsid nucleocapsid NNP cord-265978-i0fu8e0p 7 20 gene gene NN cord-265978-i0fu8e0p 7 21 of of IN cord-265978-i0fu8e0p 7 22 BCoV BCoV NNP cord-265978-i0fu8e0p 7 23 and and CC cord-265978-i0fu8e0p 7 24 the the DT cord-265978-i0fu8e0p 7 25 internal internal JJ cord-265978-i0fu8e0p 7 26 control control NN cord-265978-i0fu8e0p 7 27 , , , cord-265978-i0fu8e0p 7 28 bovine bovine JJ cord-265978-i0fu8e0p 7 29 glyceraldehyde-3-phosphate glyceraldehyde-3-phosphate NNP cord-265978-i0fu8e0p 7 30 dehydrogenase dehydrogenase NN cord-265978-i0fu8e0p 7 31 , , , cord-265978-i0fu8e0p 7 32 RNA RNA NNP cord-265978-i0fu8e0p 7 33 . . . cord-265978-i0fu8e0p 8 1 Specific specific JJ cord-265978-i0fu8e0p 8 2 identification identification NN cord-265978-i0fu8e0p 8 3 of of IN cord-265978-i0fu8e0p 8 4 both both DT cord-265978-i0fu8e0p 8 5 targets target NNS cord-265978-i0fu8e0p 8 6 was be VBD cord-265978-i0fu8e0p 8 7 elucidated elucidate VBN cord-265978-i0fu8e0p 8 8 by by IN cord-265978-i0fu8e0p 8 9 melt melt NN cord-265978-i0fu8e0p 8 10 curve curve NN cord-265978-i0fu8e0p 8 11 analysis analysis NN cord-265978-i0fu8e0p 8 12 , , , cord-265978-i0fu8e0p 8 13 in in IN cord-265978-i0fu8e0p 8 14 which which WDT cord-265978-i0fu8e0p 8 15 the the DT cord-265978-i0fu8e0p 8 16 BCoV BCoV NNP cord-265978-i0fu8e0p 8 17 amplified amplify VBN cord-265978-i0fu8e0p 8 18 product product NN cord-265978-i0fu8e0p 8 19 generated generate VBD cord-265978-i0fu8e0p 8 20 a a DT cord-265978-i0fu8e0p 8 21 melt melt NN cord-265978-i0fu8e0p 8 22 peak peak NN cord-265978-i0fu8e0p 8 23 at at IN cord-265978-i0fu8e0p 8 24 78.35 78.35 CD cord-265978-i0fu8e0p 8 25 ± ± CD cord-265978-i0fu8e0p 8 26 0.26 0.26 CD cord-265978-i0fu8e0p 8 27 ° ° NN cord-265978-i0fu8e0p 8 28 C c NN cord-265978-i0fu8e0p 8 29 and and CC cord-265978-i0fu8e0p 8 30 the the DT cord-265978-i0fu8e0p 8 31 internal internal JJ cord-265978-i0fu8e0p 8 32 control control NN cord-265978-i0fu8e0p 8 33 RNA RNA NNP cord-265978-i0fu8e0p 8 34 at at IN cord-265978-i0fu8e0p 8 35 82.54 82.54 CD cord-265978-i0fu8e0p 8 36 ± ± CD cord-265978-i0fu8e0p 8 37 0.32 0.32 CD cord-265978-i0fu8e0p 8 38 ° ° NN cord-265978-i0fu8e0p 8 39 C c NN cord-265978-i0fu8e0p 8 40 . . . cord-265978-i0fu8e0p 9 1 The the DT cord-265978-i0fu8e0p 9 2 assay assay NN cord-265978-i0fu8e0p 9 3 was be VBD cord-265978-i0fu8e0p 9 4 highly highly RB cord-265978-i0fu8e0p 9 5 specific specific JJ cord-265978-i0fu8e0p 9 6 since since IN cord-265978-i0fu8e0p 9 7 all all DT cord-265978-i0fu8e0p 9 8 negative negative JJ cord-265978-i0fu8e0p 9 9 controls control NNS cord-265978-i0fu8e0p 9 10 and and CC cord-265978-i0fu8e0p 9 11 other other JJ cord-265978-i0fu8e0p 9 12 viruses virus NNS cord-265978-i0fu8e0p 9 13 of of IN cord-265978-i0fu8e0p 9 14 clinical clinical JJ cord-265978-i0fu8e0p 9 15 and and CC cord-265978-i0fu8e0p 9 16 structural structural JJ cord-265978-i0fu8e0p 9 17 relevance relevance NN cord-265978-i0fu8e0p 9 18 failed fail VBD cord-265978-i0fu8e0p 9 19 to to TO cord-265978-i0fu8e0p 9 20 develop develop VB cord-265978-i0fu8e0p 9 21 any any DT cord-265978-i0fu8e0p 9 22 positive positive JJ cord-265978-i0fu8e0p 9 23 results result NNS cord-265978-i0fu8e0p 9 24 . . . cord-265978-i0fu8e0p 10 1 The the DT cord-265978-i0fu8e0p 10 2 detection detection NN cord-265978-i0fu8e0p 10 3 limit limit NN cord-265978-i0fu8e0p 10 4 of of IN cord-265978-i0fu8e0p 10 5 the the DT cord-265978-i0fu8e0p 10 6 reaction reaction NN cord-265978-i0fu8e0p 10 7 was be VBD cord-265978-i0fu8e0p 10 8 103 103 CD cord-265978-i0fu8e0p 10 9 plasmid plasmid NN cord-265978-i0fu8e0p 10 10 copies copy NNS cord-265978-i0fu8e0p 10 11 and and CC cord-265978-i0fu8e0p 10 12 1.17 1.17 CD cord-265978-i0fu8e0p 10 13 × × NN cord-265978-i0fu8e0p 11 1 10−3 10−3 CD cord-265978-i0fu8e0p 11 2 TCID50 tcid50 CD cord-265978-i0fu8e0p 11 3 of of IN cord-265978-i0fu8e0p 11 4 the the DT cord-265978-i0fu8e0p 11 5 tissue tissue NN cord-265978-i0fu8e0p 11 6 culture culture NN cord-265978-i0fu8e0p 11 7 propagated propagate VBD cord-265978-i0fu8e0p 11 8 virus virus NN cord-265978-i0fu8e0p 11 9 . . . cord-265978-i0fu8e0p 12 1 Standard standard JJ cord-265978-i0fu8e0p 12 2 deviation deviation NN cord-265978-i0fu8e0p 12 3 and and CC cord-265978-i0fu8e0p 12 4 coefficient coefficient NN cord-265978-i0fu8e0p 12 5 of of IN cord-265978-i0fu8e0p 12 6 variation variation NN cord-265978-i0fu8e0p 12 7 was be VBD cord-265978-i0fu8e0p 12 8 low low JJ cord-265978-i0fu8e0p 12 9 for for IN cord-265978-i0fu8e0p 12 10 both both DT cord-265978-i0fu8e0p 12 11 intra intra JJ cord-265978-i0fu8e0p 12 12 - - NN cord-265978-i0fu8e0p 12 13 assay assay JJ cord-265978-i0fu8e0p 12 14 and and CC cord-265978-i0fu8e0p 12 15 inter inter JJ cord-265978-i0fu8e0p 12 16 - - JJ cord-265978-i0fu8e0p 12 17 assay assay JJ cord-265978-i0fu8e0p 12 18 variability variability NN cord-265978-i0fu8e0p 12 19 . . . cord-265978-i0fu8e0p 13 1 The the DT cord-265978-i0fu8e0p 13 2 assay assay NN cord-265978-i0fu8e0p 13 3 performance performance NN cord-265978-i0fu8e0p 13 4 on on IN cord-265978-i0fu8e0p 13 5 field field NN cord-265978-i0fu8e0p 13 6 samples sample NNS cord-265978-i0fu8e0p 13 7 was be VBD cord-265978-i0fu8e0p 13 8 evaluated evaluate VBN cord-265978-i0fu8e0p 13 9 on on IN cord-265978-i0fu8e0p 13 10 103 103 CD cord-265978-i0fu8e0p 13 11 ( ( -LRB- cord-265978-i0fu8e0p 13 12 68 68 CD cord-265978-i0fu8e0p 13 13 fecal fecal JJ cord-265978-i0fu8e0p 13 14 and and CC cord-265978-i0fu8e0p 13 15 35 35 CD cord-265978-i0fu8e0p 13 16 nasal nasal NN cord-265978-i0fu8e0p 13 17 ) ) -RRB- cord-265978-i0fu8e0p 13 18 swab swab NN cord-265978-i0fu8e0p 13 19 specimens specimen NNS cord-265978-i0fu8e0p 13 20 and and CC cord-265978-i0fu8e0p 13 21 compared compare VBN cord-265978-i0fu8e0p 13 22 with with IN cord-265978-i0fu8e0p 13 23 the the DT cord-265978-i0fu8e0p 13 24 conventional conventional JJ cord-265978-i0fu8e0p 13 25 RT RT NNP cord-265978-i0fu8e0p 13 26 - - HYPH cord-265978-i0fu8e0p 13 27 PCR PCR NNP cord-265978-i0fu8e0p 13 28 assay assay NN cord-265978-i0fu8e0p 13 29 . . . cord-265978-i0fu8e0p 14 1 The the DT cord-265978-i0fu8e0p 14 2 results result NNS cord-265978-i0fu8e0p 14 3 of of IN cord-265978-i0fu8e0p 14 4 both both DT cord-265978-i0fu8e0p 14 5 assays assay NNS cord-265978-i0fu8e0p 14 6 matched match VBN cord-265978-i0fu8e0p 14 7 for for IN cord-265978-i0fu8e0p 14 8 the the DT cord-265978-i0fu8e0p 14 9 diagnosis diagnosis NN cord-265978-i0fu8e0p 14 10 of of IN cord-265978-i0fu8e0p 14 11 65 65 CD cord-265978-i0fu8e0p 14 12 fecal fecal NN cord-265978-i0fu8e0p 14 13 and and CC cord-265978-i0fu8e0p 14 14 33 33 CD cord-265978-i0fu8e0p 14 15 nasal nasal NN cord-265978-i0fu8e0p 14 16 samples sample NNS cord-265978-i0fu8e0p 14 17 . . . cord-265978-i0fu8e0p 15 1 However however RB cord-265978-i0fu8e0p 15 2 , , , cord-265978-i0fu8e0p 15 3 three three CD cord-265978-i0fu8e0p 15 4 fecal fecal JJ cord-265978-i0fu8e0p 15 5 and and CC cord-265978-i0fu8e0p 15 6 two two CD cord-265978-i0fu8e0p 15 7 nasal nasal NN cord-265978-i0fu8e0p 15 8 samples sample NNS cord-265978-i0fu8e0p 15 9 tested test VBD cord-265978-i0fu8e0p 15 10 negative negative JJ cord-265978-i0fu8e0p 15 11 in in IN cord-265978-i0fu8e0p 15 12 gel gel NN cord-265978-i0fu8e0p 15 13 - - HYPH cord-265978-i0fu8e0p 15 14 based base VBN cord-265978-i0fu8e0p 15 15 assay assay NN cord-265978-i0fu8e0p 15 16 were be VBD cord-265978-i0fu8e0p 15 17 positive positive JJ cord-265978-i0fu8e0p 15 18 for for IN cord-265978-i0fu8e0p 15 19 the the DT cord-265978-i0fu8e0p 15 20 real real JJ cord-265978-i0fu8e0p 15 21 - - HYPH cord-265978-i0fu8e0p 15 22 time time NN cord-265978-i0fu8e0p 15 23 RT RT NNP cord-265978-i0fu8e0p 15 24 - - HYPH cord-265978-i0fu8e0p 15 25 PCR PCR NNP cord-265978-i0fu8e0p 15 26 . . . cord-265978-i0fu8e0p 16 1 The the DT cord-265978-i0fu8e0p 16 2 robustness robustness NN cord-265978-i0fu8e0p 16 3 and and CC cord-265978-i0fu8e0p 16 4 a a DT cord-265978-i0fu8e0p 16 5 high high JJ cord-265978-i0fu8e0p 16 6 - - HYPH cord-265978-i0fu8e0p 16 7 throughput throughput NN cord-265978-i0fu8e0p 16 8 performance performance NN cord-265978-i0fu8e0p 16 9 of of IN cord-265978-i0fu8e0p 16 10 the the DT cord-265978-i0fu8e0p 16 11 developed developed JJ cord-265978-i0fu8e0p 16 12 assay assay NN cord-265978-i0fu8e0p 16 13 make make VB cord-265978-i0fu8e0p 16 14 it -PRON- PRP cord-265978-i0fu8e0p 16 15 a a DT cord-265978-i0fu8e0p 16 16 powerful powerful JJ cord-265978-i0fu8e0p 16 17 tool tool NN cord-265978-i0fu8e0p 16 18 in in IN cord-265978-i0fu8e0p 16 19 diagnostic diagnostic JJ cord-265978-i0fu8e0p 16 20 applications application NNS cord-265978-i0fu8e0p 16 21 and and CC cord-265978-i0fu8e0p 16 22 in in IN cord-265978-i0fu8e0p 16 23 BCoV BCoV NNP cord-265978-i0fu8e0p 16 24 research research NN cord-265978-i0fu8e0p 16 25 . . . cord-265978-i0fu8e0p 17 1 Bovine bovine JJ cord-265978-i0fu8e0p 17 2 coronavirus coronavirus NN cord-265978-i0fu8e0p 17 3 is be VBZ cord-265978-i0fu8e0p 17 4 the the DT cord-265978-i0fu8e0p 17 5 second second JJ cord-265978-i0fu8e0p 17 6 major major JJ cord-265978-i0fu8e0p 17 7 cause cause NN cord-265978-i0fu8e0p 17 8 of of IN cord-265978-i0fu8e0p 17 9 diarrhea diarrhea NN cord-265978-i0fu8e0p 17 10 that that WDT cord-265978-i0fu8e0p 17 11 affects affect VBZ cord-265978-i0fu8e0p 17 12 calves calf NNS cord-265978-i0fu8e0p 17 13 during during IN cord-265978-i0fu8e0p 17 14 the the DT cord-265978-i0fu8e0p 17 15 first first JJ cord-265978-i0fu8e0p 17 16 3 3 CD cord-265978-i0fu8e0p 17 17 weeks week NNS cord-265978-i0fu8e0p 17 18 of of IN cord-265978-i0fu8e0p 17 19 life life NN cord-265978-i0fu8e0p 17 20 [ [ -LRB- cord-265978-i0fu8e0p 17 21 1 1 CD cord-265978-i0fu8e0p 17 22 ] ] -RRB- cord-265978-i0fu8e0p 17 23 . . . cord-265978-i0fu8e0p 18 1 The the DT cord-265978-i0fu8e0p 18 2 virus virus NN cord-265978-i0fu8e0p 18 3 also also RB cord-265978-i0fu8e0p 18 4 infects infect VBZ cord-265978-i0fu8e0p 18 5 the the DT cord-265978-i0fu8e0p 18 6 bovine bovine JJ cord-265978-i0fu8e0p 18 7 respiratory respiratory JJ cord-265978-i0fu8e0p 18 8 tract tract NN cord-265978-i0fu8e0p 18 9 and and CC cord-265978-i0fu8e0p 18 10 it -PRON- PRP cord-265978-i0fu8e0p 18 11 has have VBZ cord-265978-i0fu8e0p 18 12 been be VBN cord-265978-i0fu8e0p 18 13 associated associate VBN cord-265978-i0fu8e0p 18 14 with with IN cord-265978-i0fu8e0p 18 15 winter winter NN cord-265978-i0fu8e0p 18 16 dysentery dysentery NN cord-265978-i0fu8e0p 18 17 in in IN cord-265978-i0fu8e0p 18 18 adult adult NN cord-265978-i0fu8e0p 18 19 cattle cattle NNS cord-265978-i0fu8e0p 18 20 [ [ -LRB- cord-265978-i0fu8e0p 18 21 2 2 CD cord-265978-i0fu8e0p 18 22 , , , cord-265978-i0fu8e0p 18 23 3 3 CD cord-265978-i0fu8e0p 18 24 ] ] -RRB- cord-265978-i0fu8e0p 18 25 . . . cord-265978-i0fu8e0p 19 1 Disease Disease NNP cord-265978-i0fu8e0p 19 2 outcomes outcome NNS cord-265978-i0fu8e0p 19 3 ' ' POS cord-265978-i0fu8e0p 19 4 induced induce VBN cord-265978-i0fu8e0p 19 5 by by IN cord-265978-i0fu8e0p 19 6 BCoV BCoV NNP cord-265978-i0fu8e0p 19 7 are be VBP cord-265978-i0fu8e0p 19 8 responsible responsible JJ cord-265978-i0fu8e0p 19 9 for for IN cord-265978-i0fu8e0p 19 10 significant significant JJ cord-265978-i0fu8e0p 19 11 economical economical JJ cord-265978-i0fu8e0p 19 12 losses loss NNS cord-265978-i0fu8e0p 19 13 to to TO cord-265978-i0fu8e0p 19 14 beef beef NN cord-265978-i0fu8e0p 19 15 and and CC cord-265978-i0fu8e0p 19 16 dairy dairy NN cord-265978-i0fu8e0p 19 17 industries industry NNS cord-265978-i0fu8e0p 19 18 worldwide worldwide RB cord-265978-i0fu8e0p 19 19 . . . cord-265978-i0fu8e0p 20 1 These these DT cord-265978-i0fu8e0p 20 2 losses loss NNS cord-265978-i0fu8e0p 20 3 are be VBP cord-265978-i0fu8e0p 20 4 not not RB cord-265978-i0fu8e0p 20 5 only only RB cord-265978-i0fu8e0p 20 6 the the DT cord-265978-i0fu8e0p 20 7 figure figure NN cord-265978-i0fu8e0p 20 8 of of IN cord-265978-i0fu8e0p 20 9 mortalities mortality NNS cord-265978-i0fu8e0p 20 10 , , , cord-265978-i0fu8e0p 20 11 which which WDT cord-265978-i0fu8e0p 20 12 may may MD cord-265978-i0fu8e0p 20 13 reach reach VB cord-265978-i0fu8e0p 20 14 80 80 CD cord-265978-i0fu8e0p 20 15 % % NN cord-265978-i0fu8e0p 20 16 in in IN cord-265978-i0fu8e0p 20 17 some some DT cord-265978-i0fu8e0p 20 18 complicated complicated JJ cord-265978-i0fu8e0p 20 19 cases case NNS cord-265978-i0fu8e0p 20 20 , , , cord-265978-i0fu8e0p 20 21 but but CC cord-265978-i0fu8e0p 20 22 also also RB cord-265978-i0fu8e0p 20 23 reflect reflect VBP cord-265978-i0fu8e0p 20 24 the the DT cord-265978-i0fu8e0p 20 25 veterinary veterinary JJ cord-265978-i0fu8e0p 20 26 costs cost NNS cord-265978-i0fu8e0p 20 27 , , , cord-265978-i0fu8e0p 20 28 medications medication NNS cord-265978-i0fu8e0p 20 29 and and CC cord-265978-i0fu8e0p 20 30 poor poor JJ cord-265978-i0fu8e0p 20 31 productivity productivity NN cord-265978-i0fu8e0p 20 32 of of IN cord-265978-i0fu8e0p 20 33 affected affect VBN cord-265978-i0fu8e0p 20 34 animals animal NNS cord-265978-i0fu8e0p 20 35 [ [ -LRB- cord-265978-i0fu8e0p 20 36 4 4 CD cord-265978-i0fu8e0p 20 37 ] ] -RRB- cord-265978-i0fu8e0p 20 38 . . . cord-265978-i0fu8e0p 21 1 BCoV BCoV NNP cord-265978-i0fu8e0p 21 2 is be VBZ cord-265978-i0fu8e0p 21 3 a a DT cord-265978-i0fu8e0p 21 4 member member NN cord-265978-i0fu8e0p 21 5 of of IN cord-265978-i0fu8e0p 21 6 the the DT cord-265978-i0fu8e0p 21 7 antigenic antigenic JJ cord-265978-i0fu8e0p 21 8 group group NN cord-265978-i0fu8e0p 21 9 2 2 CD cord-265978-i0fu8e0p 21 10 of of IN cord-265978-i0fu8e0p 21 11 genus genus NN cord-265978-i0fu8e0p 21 12 Coronavirus Coronavirus NNP cord-265978-i0fu8e0p 21 13 that that WDT cord-265978-i0fu8e0p 21 14 belongs belong VBZ cord-265978-i0fu8e0p 21 15 to to IN cord-265978-i0fu8e0p 21 16 family family NN cord-265978-i0fu8e0p 21 17 Coronaviridae Coronaviridae NNP cord-265978-i0fu8e0p 21 18 within within IN cord-265978-i0fu8e0p 21 19 the the DT cord-265978-i0fu8e0p 21 20 order order NN cord-265978-i0fu8e0p 22 1 Nidovirales Nidovirales NNP cord-265978-i0fu8e0p 22 2 [ [ -LRB- cord-265978-i0fu8e0p 22 3 5 5 CD cord-265978-i0fu8e0p 22 4 ] ] -RRB- cord-265978-i0fu8e0p 22 5 . . . cord-265978-i0fu8e0p 23 1 The the DT cord-265978-i0fu8e0p 23 2 virion virion NN cord-265978-i0fu8e0p 23 3 possesses possess VBZ cord-265978-i0fu8e0p 23 4 a a DT cord-265978-i0fu8e0p 23 5 single single JJ cord-265978-i0fu8e0p 23 6 stranded strand VBN cord-265978-i0fu8e0p 23 7 , , , cord-265978-i0fu8e0p 23 8 non non JJ cord-265978-i0fu8e0p 23 9 - - JJ cord-265978-i0fu8e0p 23 10 segmented segmented JJ cord-265978-i0fu8e0p 23 11 , , , cord-265978-i0fu8e0p 23 12 linear linear NNP cord-265978-i0fu8e0p 23 13 RNA RNA NNP cord-265978-i0fu8e0p 23 14 genome genome NN cord-265978-i0fu8e0p 23 15 of of IN cord-265978-i0fu8e0p 23 16 positive positive JJ cord-265978-i0fu8e0p 23 17 polarity polarity NN cord-265978-i0fu8e0p 23 18 that that WDT cord-265978-i0fu8e0p 23 19 is be VBZ cord-265978-i0fu8e0p 23 20 capped cap VBN cord-265978-i0fu8e0p 23 21 , , , cord-265978-i0fu8e0p 23 22 polyadenylated polyadenylated JJ cord-265978-i0fu8e0p 23 23 and and CC cord-265978-i0fu8e0p 23 24 infectious infectious JJ cord-265978-i0fu8e0p 23 25 [ [ -LRB- cord-265978-i0fu8e0p 23 26 6 6 CD cord-265978-i0fu8e0p 23 27 ] ] -RRB- cord-265978-i0fu8e0p 23 28 . . . cord-265978-i0fu8e0p 24 1 The the DT cord-265978-i0fu8e0p 24 2 viral viral JJ cord-265978-i0fu8e0p 24 3 genome genome NN cord-265978-i0fu8e0p 24 4 is be VBZ cord-265978-i0fu8e0p 24 5 associated associate VBN cord-265978-i0fu8e0p 24 6 with with IN cord-265978-i0fu8e0p 24 7 the the DT cord-265978-i0fu8e0p 24 8 nucleoprotein nucleoprotein NNP cord-265978-i0fu8e0p 24 9 ( ( -LRB- cord-265978-i0fu8e0p 24 10 N N NNP cord-265978-i0fu8e0p 24 11 ) ) -RRB- cord-265978-i0fu8e0p 24 12 to to TO cord-265978-i0fu8e0p 24 13 form form VB cord-265978-i0fu8e0p 24 14 a a DT cord-265978-i0fu8e0p 24 15 long long JJ cord-265978-i0fu8e0p 24 16 , , , cord-265978-i0fu8e0p 24 17 flexible flexible JJ cord-265978-i0fu8e0p 24 18 and and CC cord-265978-i0fu8e0p 24 19 helical helical JJ cord-265978-i0fu8e0p 24 20 nucleocapsid nucleocapsid NN cord-265978-i0fu8e0p 24 21 . . . cord-265978-i0fu8e0p 25 1 The the DT cord-265978-i0fu8e0p 25 2 nucleocapsid nucleocapsid NN cord-265978-i0fu8e0p 25 3 is be VBZ cord-265978-i0fu8e0p 25 4 wrapped wrap VBN cord-265978-i0fu8e0p 25 5 within within IN cord-265978-i0fu8e0p 25 6 a a DT cord-265978-i0fu8e0p 25 7 lipoprotein lipoprotein NN cord-265978-i0fu8e0p 25 8 envelope envelope NN cord-265978-i0fu8e0p 25 9 that that WDT cord-265978-i0fu8e0p 25 10 carries carry VBZ cord-265978-i0fu8e0p 25 11 four four CD cord-265978-i0fu8e0p 25 12 structural structural JJ cord-265978-i0fu8e0p 25 13 proteins protein NNS cord-265978-i0fu8e0p 25 14 ; ; : cord-265978-i0fu8e0p 25 15 the the DT cord-265978-i0fu8e0p 25 16 integral integral JJ cord-265978-i0fu8e0p 25 17 membrane membrane NN cord-265978-i0fu8e0p 25 18 glycoprotein glycoprotein NN cord-265978-i0fu8e0p 25 19 ( ( -LRB- cord-265978-i0fu8e0p 25 20 M M NNP cord-265978-i0fu8e0p 25 21 ) ) -RRB- cord-265978-i0fu8e0p 25 22 ; ; : cord-265978-i0fu8e0p 25 23 the the DT cord-265978-i0fu8e0p 25 24 spike spike NN cord-265978-i0fu8e0p 25 25 glycoprotein glycoprotein NN cord-265978-i0fu8e0p 25 26 ( ( -LRB- cord-265978-i0fu8e0p 25 27 S s NN cord-265978-i0fu8e0p 25 28 ) ) -RRB- cord-265978-i0fu8e0p 25 29 ; ; : cord-265978-i0fu8e0p 25 30 the the DT cord-265978-i0fu8e0p 25 31 hemagglutinineesterase hemagglutinineesterase NN cord-265978-i0fu8e0p 25 32 glycoprotein glycoprotein NN cord-265978-i0fu8e0p 25 33 ( ( -LRB- cord-265978-i0fu8e0p 25 34 HE HE NNP cord-265978-i0fu8e0p 25 35 ) ) -RRB- cord-265978-i0fu8e0p 25 36 and and CC cord-265978-i0fu8e0p 25 37 the the DT cord-265978-i0fu8e0p 25 38 small small JJ cord-265978-i0fu8e0p 25 39 envelope envelope NN cord-265978-i0fu8e0p 25 40 protein protein NN cord-265978-i0fu8e0p 25 41 ( ( -LRB- cord-265978-i0fu8e0p 25 42 E e NN cord-265978-i0fu8e0p 25 43 ) ) -RRB- cord-265978-i0fu8e0p 25 44 [ [ -LRB- cord-265978-i0fu8e0p 25 45 7 7 CD cord-265978-i0fu8e0p 25 46 ] ] -RRB- cord-265978-i0fu8e0p 25 47 . . . cord-265978-i0fu8e0p 26 1 Although although IN cord-265978-i0fu8e0p 26 2 several several JJ cord-265978-i0fu8e0p 26 3 methods method NNS cord-265978-i0fu8e0p 26 4 have have VBP cord-265978-i0fu8e0p 26 5 been be VBN cord-265978-i0fu8e0p 26 6 used use VBN cord-265978-i0fu8e0p 26 7 for for IN cord-265978-i0fu8e0p 26 8 diagnosis diagnosis NN cord-265978-i0fu8e0p 26 9 of of IN cord-265978-i0fu8e0p 26 10 BCoV BCoV NNP cord-265978-i0fu8e0p 26 11 infections infection NNS cord-265978-i0fu8e0p 26 12 , , , cord-265978-i0fu8e0p 26 13 there there EX cord-265978-i0fu8e0p 26 14 is be VBZ cord-265978-i0fu8e0p 26 15 no no DT cord-265978-i0fu8e0p 26 16 " " `` cord-265978-i0fu8e0p 26 17 gold gold JJ cord-265978-i0fu8e0p 26 18 standard standard NN cord-265978-i0fu8e0p 26 19 " " '' cord-265978-i0fu8e0p 26 20 test test NN cord-265978-i0fu8e0p 26 21 exists exist VBZ cord-265978-i0fu8e0p 26 22 . . . cord-265978-i0fu8e0p 27 1 Virus virus NN cord-265978-i0fu8e0p 27 2 isolation isolation NN cord-265978-i0fu8e0p 27 3 with with IN cord-265978-i0fu8e0p 27 4 the the DT cord-265978-i0fu8e0p 27 5 G g NN cord-265978-i0fu8e0p 27 6 clone clone NN cord-265978-i0fu8e0p 27 7 of of IN cord-265978-i0fu8e0p 27 8 HRT-18 HRT-18 NNP cord-265978-i0fu8e0p 27 9 cells cell NNS cord-265978-i0fu8e0p 27 10 has have VBZ cord-265978-i0fu8e0p 27 11 long long RB cord-265978-i0fu8e0p 27 12 been be VBN cord-265978-i0fu8e0p 27 13 considered consider VBN cord-265978-i0fu8e0p 27 14 the the DT cord-265978-i0fu8e0p 27 15 most most RBS cord-265978-i0fu8e0p 27 16 sensitive sensitive JJ cord-265978-i0fu8e0p 27 17 tool tool NN cord-265978-i0fu8e0p 27 18 available available JJ cord-265978-i0fu8e0p 27 19 but but CC cord-265978-i0fu8e0p 27 20 this this DT cord-265978-i0fu8e0p 27 21 procedure procedure NN cord-265978-i0fu8e0p 27 22 was be VBD cord-265978-i0fu8e0p 27 23 difficult difficult JJ cord-265978-i0fu8e0p 27 24 , , , cord-265978-i0fu8e0p 27 25 timeconsuming timeconsuming JJ cord-265978-i0fu8e0p 27 26 and and CC cord-265978-i0fu8e0p 27 27 not not RB cord-265978-i0fu8e0p 27 28 practical practical JJ cord-265978-i0fu8e0p 27 29 for for IN cord-265978-i0fu8e0p 27 30 high high JJ cord-265978-i0fu8e0p 27 31 - - HYPH cord-265978-i0fu8e0p 27 32 throughput throughput NN cord-265978-i0fu8e0p 27 33 screening screening NN cord-265978-i0fu8e0p 27 34 of of IN cord-265978-i0fu8e0p 27 35 samples sample NNS cord-265978-i0fu8e0p 27 36 [ [ -LRB- cord-265978-i0fu8e0p 27 37 8 8 CD cord-265978-i0fu8e0p 27 38 ] ] -RRB- cord-265978-i0fu8e0p 27 39 . . . cord-265978-i0fu8e0p 28 1 Molecular molecular JJ cord-265978-i0fu8e0p 28 2 assays assay NNS cord-265978-i0fu8e0p 28 3 such such JJ cord-265978-i0fu8e0p 28 4 as as IN cord-265978-i0fu8e0p 28 5 RT RT NNP cord-265978-i0fu8e0p 28 6 - - HYPH cord-265978-i0fu8e0p 28 7 PCR PCR NNP cord-265978-i0fu8e0p 28 8 offered offer VBD cord-265978-i0fu8e0p 28 9 a a DT cord-265978-i0fu8e0p 28 10 suitable suitable JJ cord-265978-i0fu8e0p 28 11 alternative alternative NN cord-265978-i0fu8e0p 28 12 to to IN cord-265978-i0fu8e0p 28 13 virus virus NN cord-265978-i0fu8e0p 28 14 isolation isolation NN cord-265978-i0fu8e0p 28 15 since since IN cord-265978-i0fu8e0p 28 16 they -PRON- PRP cord-265978-i0fu8e0p 28 17 are be VBP cord-265978-i0fu8e0p 28 18 faster fast JJR cord-265978-i0fu8e0p 28 19 , , , cord-265978-i0fu8e0p 28 20 simpler simple JJR cord-265978-i0fu8e0p 28 21 yet yet CC cord-265978-i0fu8e0p 28 22 maintain maintain VB cord-265978-i0fu8e0p 28 23 the the DT cord-265978-i0fu8e0p 28 24 higher high JJR cord-265978-i0fu8e0p 28 25 performance performance NN cord-265978-i0fu8e0p 28 26 and and CC cord-265978-i0fu8e0p 28 27 accuracy accuracy NN cord-265978-i0fu8e0p 28 28 required require VBN cord-265978-i0fu8e0p 28 29 for for IN cord-265978-i0fu8e0p 28 30 conclusive conclusive JJ cord-265978-i0fu8e0p 28 31 rapid rapid JJ cord-265978-i0fu8e0p 28 32 diagnosis diagnosis NN cord-265978-i0fu8e0p 28 33 of of IN cord-265978-i0fu8e0p 28 34 field field NN cord-265978-i0fu8e0p 28 35 outbreaks outbreak NNS cord-265978-i0fu8e0p 28 36 [ [ -LRB- cord-265978-i0fu8e0p 28 37 9 9 CD cord-265978-i0fu8e0p 28 38 , , , cord-265978-i0fu8e0p 28 39 10 10 CD cord-265978-i0fu8e0p 28 40 ] ] -RRB- cord-265978-i0fu8e0p 28 41 . . . cord-265978-i0fu8e0p 29 1 The the DT cord-265978-i0fu8e0p 29 2 advent advent NN cord-265978-i0fu8e0p 29 3 of of IN cord-265978-i0fu8e0p 29 4 real real JJ cord-265978-i0fu8e0p 29 5 - - HYPH cord-265978-i0fu8e0p 29 6 time time NN cord-265978-i0fu8e0p 29 7 PCR PCR NNP cord-265978-i0fu8e0p 29 8 methods method NNS cord-265978-i0fu8e0p 29 9 has have VBZ cord-265978-i0fu8e0p 29 10 further further RB cord-265978-i0fu8e0p 29 11 improved improve VBN cord-265978-i0fu8e0p 29 12 the the DT cord-265978-i0fu8e0p 29 13 significant significant JJ cord-265978-i0fu8e0p 29 14 benefits benefit NNS cord-265978-i0fu8e0p 29 15 of of IN cord-265978-i0fu8e0p 29 16 RT RT NNP cord-265978-i0fu8e0p 29 17 - - HYPH cord-265978-i0fu8e0p 29 18 PCR PCR NNP cord-265978-i0fu8e0p 29 19 . . . cord-265978-i0fu8e0p 30 1 Compared compare VBN cord-265978-i0fu8e0p 30 2 to to IN cord-265978-i0fu8e0p 30 3 conventional conventional JJ cord-265978-i0fu8e0p 30 4 gel gel NN cord-265978-i0fu8e0p 30 5 - - HYPH cord-265978-i0fu8e0p 30 6 based base VBN cord-265978-i0fu8e0p 30 7 PCR PCR NNP cord-265978-i0fu8e0p 30 8 assays assay NNS cord-265978-i0fu8e0p 30 9 , , , cord-265978-i0fu8e0p 30 10 real real JJ cord-265978-i0fu8e0p 30 11 - - HYPH cord-265978-i0fu8e0p 30 12 time time NN cord-265978-i0fu8e0p 30 13 PCR PCR NNP cord-265978-i0fu8e0p 30 14 has have VBZ cord-265978-i0fu8e0p 30 15 many many JJ cord-265978-i0fu8e0p 30 16 advantages advantage NNS cord-265978-i0fu8e0p 30 17 including include VBG cord-265978-i0fu8e0p 30 18 rapidity rapidity NN cord-265978-i0fu8e0p 30 19 , , , cord-265978-i0fu8e0p 30 20 higher high JJR cord-265978-i0fu8e0p 30 21 sensitivity sensitivity NN cord-265978-i0fu8e0p 30 22 , , , cord-265978-i0fu8e0p 30 23 specificity specificity NN cord-265978-i0fu8e0p 30 24 and and CC cord-265978-i0fu8e0p 30 25 throughput throughput NN cord-265978-i0fu8e0p 30 26 , , , cord-265978-i0fu8e0p 30 27 lower low JJR cord-265978-i0fu8e0p 30 28 hand hand NN cord-265978-i0fu8e0p 30 29 - - HYPH cord-265978-i0fu8e0p 30 30 on on IN cord-265978-i0fu8e0p 30 31 - - HYPH cord-265978-i0fu8e0p 30 32 time time NN cord-265978-i0fu8e0p 30 33 , , , cord-265978-i0fu8e0p 30 34 minimal minimal JJ cord-265978-i0fu8e0p 30 35 contamination contamination NN cord-265978-i0fu8e0p 30 36 rate rate NN cord-265978-i0fu8e0p 30 37 , , , cord-265978-i0fu8e0p 30 38 quantitative quantitative JJ cord-265978-i0fu8e0p 30 39 measurement measurement NN cord-265978-i0fu8e0p 30 40 , , , cord-265978-i0fu8e0p 30 41 automation automation NN cord-265978-i0fu8e0p 30 42 , , , cord-265978-i0fu8e0p 30 43 and and CC cord-265978-i0fu8e0p 30 44 easy easy JJ cord-265978-i0fu8e0p 30 45 standardization standardization NN cord-265978-i0fu8e0p 30 46 [ [ -LRB- cord-265978-i0fu8e0p 30 47 11 11 CD cord-265978-i0fu8e0p 30 48 ] ] -RRB- cord-265978-i0fu8e0p 30 49 . . . cord-265978-i0fu8e0p 31 1 All all DT cord-265978-i0fu8e0p 31 2 real real JJ cord-265978-i0fu8e0p 31 3 - - HYPH cord-265978-i0fu8e0p 31 4 time time NN cord-265978-i0fu8e0p 31 5 amplification amplification NN cord-265978-i0fu8e0p 31 6 methods method NNS cord-265978-i0fu8e0p 31 7 depend depend VBP cord-265978-i0fu8e0p 31 8 on on IN cord-265978-i0fu8e0p 31 9 the the DT cord-265978-i0fu8e0p 31 10 detection detection NN cord-265978-i0fu8e0p 31 11 and and CC cord-265978-i0fu8e0p 31 12 quantification quantification NN cord-265978-i0fu8e0p 31 13 of of IN cord-265978-i0fu8e0p 31 14 a a DT cord-265978-i0fu8e0p 31 15 fluorescent fluorescent JJ cord-265978-i0fu8e0p 31 16 reporter reporter NN cord-265978-i0fu8e0p 31 17 molecule molecule NN cord-265978-i0fu8e0p 31 18 whose whose WP$ cord-265978-i0fu8e0p 31 19 signal signal NN cord-265978-i0fu8e0p 31 20 increases increase NNS cord-265978-i0fu8e0p 31 21 in in IN cord-265978-i0fu8e0p 31 22 proportion proportion NN cord-265978-i0fu8e0p 31 23 to to IN cord-265978-i0fu8e0p 31 24 the the DT cord-265978-i0fu8e0p 31 25 generated generate VBN cord-265978-i0fu8e0p 31 26 amplicon amplicon NN cord-265978-i0fu8e0p 31 27 . . . cord-265978-i0fu8e0p 32 1 The the DT cord-265978-i0fu8e0p 32 2 simplest simple JJS cord-265978-i0fu8e0p 32 3 and and CC cord-265978-i0fu8e0p 32 4 most most RBS cord-265978-i0fu8e0p 32 5 cost cost NN cord-265978-i0fu8e0p 32 6 - - HYPH cord-265978-i0fu8e0p 32 7 effective effective JJ cord-265978-i0fu8e0p 32 8 method method NN cord-265978-i0fu8e0p 32 9 involves involve VBZ cord-265978-i0fu8e0p 32 10 the the DT cord-265978-i0fu8e0p 32 11 use use NN cord-265978-i0fu8e0p 32 12 of of IN cord-265978-i0fu8e0p 32 13 DNA dna NN cord-265978-i0fu8e0p 32 14 intercalating intercalating NN cord-265978-i0fu8e0p 32 15 dye dye NN cord-265978-i0fu8e0p 32 16 such such JJ cord-265978-i0fu8e0p 32 17 as as IN cord-265978-i0fu8e0p 32 18 SYBR SYBR NNP cord-265978-i0fu8e0p 32 19 Green Green NNP cord-265978-i0fu8e0p 32 20 I I NNP cord-265978-i0fu8e0p 32 21 as as IN cord-265978-i0fu8e0p 32 22 a a DT cord-265978-i0fu8e0p 32 23 fluorescent fluorescent JJ cord-265978-i0fu8e0p 32 24 reporter reporter NN cord-265978-i0fu8e0p 32 25 . . . cord-265978-i0fu8e0p 33 1 However however RB cord-265978-i0fu8e0p 33 2 , , , cord-265978-i0fu8e0p 33 3 the the DT cord-265978-i0fu8e0p 33 4 major major JJ cord-265978-i0fu8e0p 33 5 disadvantage disadvantage NN cord-265978-i0fu8e0p 33 6 is be VBZ cord-265978-i0fu8e0p 33 7 that that IN cord-265978-i0fu8e0p 33 8 the the DT cord-265978-i0fu8e0p 33 9 dye dye NN cord-265978-i0fu8e0p 33 10 molecules molecule NNS cord-265978-i0fu8e0p 33 11 may may MD cord-265978-i0fu8e0p 33 12 bind bind VB cord-265978-i0fu8e0p 33 13 to to IN cord-265978-i0fu8e0p 33 14 any any DT cord-265978-i0fu8e0p 33 15 double double JJ cord-265978-i0fu8e0p 33 16 stranded strand VBN cord-265978-i0fu8e0p 33 17 DNA dna NN cord-265978-i0fu8e0p 33 18 in in IN cord-265978-i0fu8e0p 33 19 the the DT cord-265978-i0fu8e0p 33 20 reaction reaction NN cord-265978-i0fu8e0p 33 21 including include VBG cord-265978-i0fu8e0p 33 22 non non JJ cord-265978-i0fu8e0p 33 23 - - JJ cord-265978-i0fu8e0p 33 24 specific specific JJ cord-265978-i0fu8e0p 33 25 products product NNS cord-265978-i0fu8e0p 33 26 and and CC cord-265978-i0fu8e0p 33 27 primer primer NN cord-265978-i0fu8e0p 33 28 - - HYPH cord-265978-i0fu8e0p 33 29 dimmers dimmer NNS cord-265978-i0fu8e0p 33 30 , , , cord-265978-i0fu8e0p 33 31 which which WDT cord-265978-i0fu8e0p 33 32 requires require VBZ cord-265978-i0fu8e0p 33 33 melt melt NN cord-265978-i0fu8e0p 33 34 curve curve NN cord-265978-i0fu8e0p 33 35 analysis analysis NN cord-265978-i0fu8e0p 33 36 to to TO cord-265978-i0fu8e0p 33 37 control control VB cord-265978-i0fu8e0p 33 38 the the DT cord-265978-i0fu8e0p 33 39 specificity specificity NN cord-265978-i0fu8e0p 33 40 of of IN cord-265978-i0fu8e0p 33 41 the the DT cord-265978-i0fu8e0p 33 42 reaction reaction NN cord-265978-i0fu8e0p 33 43 [ [ -LRB- cord-265978-i0fu8e0p 33 44 12 12 CD cord-265978-i0fu8e0p 33 45 ] ] -RRB- cord-265978-i0fu8e0p 33 46 . . . cord-265978-i0fu8e0p 34 1 A a DT cord-265978-i0fu8e0p 34 2 single single JJ cord-265978-i0fu8e0p 34 3 report report NN cord-265978-i0fu8e0p 34 4 described describe VBD cord-265978-i0fu8e0p 34 5 the the DT cord-265978-i0fu8e0p 34 6 use use NN cord-265978-i0fu8e0p 34 7 of of IN cord-265978-i0fu8e0p 34 8 SYBR SYBR NNP cord-265978-i0fu8e0p 34 9 Green Green NNP cord-265978-i0fu8e0p 34 10 I I NNP cord-265978-i0fu8e0p 34 11 for for IN cord-265978-i0fu8e0p 34 12 detection detection NN cord-265978-i0fu8e0p 34 13 of of IN cord-265978-i0fu8e0p 34 14 32 32 CD cord-265978-i0fu8e0p 34 15 animal animal NN cord-265978-i0fu8e0p 34 16 coronaviruses coronaviruse NNS cord-265978-i0fu8e0p 34 17 including include VBG cord-265978-i0fu8e0p 34 18 BCoV BCoV NNP cord-265978-i0fu8e0p 34 19 using use VBG cord-265978-i0fu8e0p 34 20 degenerate degenerate JJ cord-265978-i0fu8e0p 34 21 primers primer NNS cord-265978-i0fu8e0p 34 22 [ [ -LRB- cord-265978-i0fu8e0p 34 23 13 13 CD cord-265978-i0fu8e0p 34 24 ] ] -RRB- cord-265978-i0fu8e0p 34 25 . . . cord-265978-i0fu8e0p 35 1 This this DT cord-265978-i0fu8e0p 35 2 test test NN cord-265978-i0fu8e0p 35 3 could could MD cord-265978-i0fu8e0p 35 4 be be VB cord-265978-i0fu8e0p 35 5 used use VBN cord-265978-i0fu8e0p 35 6 only only RB cord-265978-i0fu8e0p 35 7 for for IN cord-265978-i0fu8e0p 35 8 detection detection NN cord-265978-i0fu8e0p 35 9 of of IN cord-265978-i0fu8e0p 35 10 new new JJ cord-265978-i0fu8e0p 35 11 , , , cord-265978-i0fu8e0p 35 12 uncharacterized uncharacterized JJ cord-265978-i0fu8e0p 35 13 coronaviruses coronaviruse NNS cord-265978-i0fu8e0p 35 14 rather rather RB cord-265978-i0fu8e0p 35 15 than than IN cord-265978-i0fu8e0p 35 16 for for IN cord-265978-i0fu8e0p 35 17 specific specific JJ cord-265978-i0fu8e0p 35 18 identification identification NN cord-265978-i0fu8e0p 35 19 of of IN cord-265978-i0fu8e0p 35 20 BCoV. bcov. CD cord-265978-i0fu8e0p 36 1 In in IN cord-265978-i0fu8e0p 36 2 this this DT cord-265978-i0fu8e0p 36 3 report report NN cord-265978-i0fu8e0p 36 4 , , , cord-265978-i0fu8e0p 36 5 a a DT cord-265978-i0fu8e0p 36 6 real real JJ cord-265978-i0fu8e0p 36 7 - - HYPH cord-265978-i0fu8e0p 36 8 time time NN cord-265978-i0fu8e0p 36 9 RT rt NN cord-265978-i0fu8e0p 36 10 - - HYPH cord-265978-i0fu8e0p 36 11 PCR PCR NNP cord-265978-i0fu8e0p 36 12 system system NN cord-265978-i0fu8e0p 36 13 using use VBG cord-265978-i0fu8e0p 36 14 SYBR SYBR NNP cord-265978-i0fu8e0p 36 15 Green Green NNP cord-265978-i0fu8e0p 36 16 I I NNP cord-265978-i0fu8e0p 36 17 and and CC cord-265978-i0fu8e0p 36 18 melt melt VB cord-265978-i0fu8e0p 36 19 curve curve NN cord-265978-i0fu8e0p 36 20 analysis analysis NN cord-265978-i0fu8e0p 36 21 was be VBD cord-265978-i0fu8e0p 36 22 developed develop VBN cord-265978-i0fu8e0p 36 23 for for IN cord-265978-i0fu8e0p 36 24 detection detection NN cord-265978-i0fu8e0p 36 25 and and CC cord-265978-i0fu8e0p 36 26 quantification quantification NN cord-265978-i0fu8e0p 36 27 of of IN cord-265978-i0fu8e0p 36 28 BCoV BCoV NNP cord-265978-i0fu8e0p 36 29 in in IN cord-265978-i0fu8e0p 36 30 clinical clinical JJ cord-265978-i0fu8e0p 36 31 samples sample NNS cord-265978-i0fu8e0p 36 32 . . . cord-265978-i0fu8e0p 37 1 The the DT cord-265978-i0fu8e0p 37 2 assay assay NN cord-265978-i0fu8e0p 37 3 performance performance NN cord-265978-i0fu8e0p 37 4 was be VBD cord-265978-i0fu8e0p 37 5 verified verify VBN cord-265978-i0fu8e0p 37 6 by by IN cord-265978-i0fu8e0p 37 7 the the DT cord-265978-i0fu8e0p 37 8 evaluation evaluation NN cord-265978-i0fu8e0p 37 9 of of IN cord-265978-i0fu8e0p 37 10 specificity specificity NN cord-265978-i0fu8e0p 37 11 , , , cord-265978-i0fu8e0p 37 12 sensitivity sensitivity NN cord-265978-i0fu8e0p 37 13 , , , cord-265978-i0fu8e0p 37 14 reproducibility reproducibility NN cord-265978-i0fu8e0p 37 15 and and CC cord-265978-i0fu8e0p 37 16 dynamic dynamic JJ cord-265978-i0fu8e0p 37 17 range range NN cord-265978-i0fu8e0p 37 18 . . . cord-265978-i0fu8e0p 38 1 The the DT cord-265978-i0fu8e0p 38 2 different different JJ cord-265978-i0fu8e0p 38 3 viruses virus NNS cord-265978-i0fu8e0p 38 4 used use VBN cord-265978-i0fu8e0p 38 5 in in IN cord-265978-i0fu8e0p 38 6 this this DT cord-265978-i0fu8e0p 38 7 study study NN cord-265978-i0fu8e0p 38 8 are be VBP cord-265978-i0fu8e0p 38 9 listed list VBN cord-265978-i0fu8e0p 38 10 in in IN cord-265978-i0fu8e0p 38 11 Table Table NNP cord-265978-i0fu8e0p 38 12 1 1 CD cord-265978-i0fu8e0p 38 13 . . . cord-265978-i0fu8e0p 39 1 BCoV bcov NN cord-265978-i0fu8e0p 39 2 reference reference NN cord-265978-i0fu8e0p 39 3 ( ( -LRB- cord-265978-i0fu8e0p 39 4 Mebus Mebus NNP cord-265978-i0fu8e0p 39 5 ) ) -RRB- cord-265978-i0fu8e0p 39 6 strain strain NN cord-265978-i0fu8e0p 39 7 was be VBD cord-265978-i0fu8e0p 39 8 used use VBN cord-265978-i0fu8e0p 39 9 throughout throughout IN cord-265978-i0fu8e0p 39 10 this this DT cord-265978-i0fu8e0p 39 11 study study NN cord-265978-i0fu8e0p 39 12 to to TO cord-265978-i0fu8e0p 39 13 standardize standardize VB cord-265978-i0fu8e0p 39 14 the the DT cord-265978-i0fu8e0p 39 15 real real JJ cord-265978-i0fu8e0p 39 16 - - HYPH cord-265978-i0fu8e0p 39 17 time time NN cord-265978-i0fu8e0p 39 18 RT RT NNP cord-265978-i0fu8e0p 39 19 - - HYPH cord-265978-i0fu8e0p 39 20 PCR PCR NNP cord-265978-i0fu8e0p 39 21 assay assay NN cord-265978-i0fu8e0p 39 22 . . . cord-265978-i0fu8e0p 40 1 Several several JJ cord-265978-i0fu8e0p 40 2 enteric enteric JJ cord-265978-i0fu8e0p 40 3 and and CC cord-265978-i0fu8e0p 40 4 respiratory respiratory JJ cord-265978-i0fu8e0p 40 5 bovine bovine JJ cord-265978-i0fu8e0p 40 6 viruses virus NNS cord-265978-i0fu8e0p 40 7 were be VBD cord-265978-i0fu8e0p 40 8 included include VBN cord-265978-i0fu8e0p 40 9 to to TO cord-265978-i0fu8e0p 40 10 test test VB cord-265978-i0fu8e0p 40 11 the the DT cord-265978-i0fu8e0p 40 12 specificity specificity NN cord-265978-i0fu8e0p 40 13 of of IN cord-265978-i0fu8e0p 40 14 the the DT cord-265978-i0fu8e0p 40 15 developed developed JJ cord-265978-i0fu8e0p 40 16 assay assay NN cord-265978-i0fu8e0p 40 17 . . . cord-265978-i0fu8e0p 41 1 A a DT cord-265978-i0fu8e0p 41 2 single single JJ cord-265978-i0fu8e0p 41 3 coronavirus coronavirus NN cord-265978-i0fu8e0p 41 4 ( ( -LRB- cord-265978-i0fu8e0p 41 5 avian avian JJ cord-265978-i0fu8e0p 41 6 infectious infectious JJ cord-265978-i0fu8e0p 41 7 bronchitis bronchitis NN cord-265978-i0fu8e0p 41 8 virus virus NN cord-265978-i0fu8e0p 41 9 ) ) -RRB- cord-265978-i0fu8e0p 41 10 was be VBD cord-265978-i0fu8e0p 41 11 used use VBN cord-265978-i0fu8e0p 41 12 for for IN cord-265978-i0fu8e0p 41 13 evaluation evaluation NN cord-265978-i0fu8e0p 41 14 of of IN cord-265978-i0fu8e0p 41 15 the the DT cord-265978-i0fu8e0p 41 16 cross cross NN cord-265978-i0fu8e0p 41 17 reactivity reactivity NN cord-265978-i0fu8e0p 41 18 . . . cord-265978-i0fu8e0p 42 1 Other other JJ cord-265978-i0fu8e0p 42 2 viruses virus NNS cord-265978-i0fu8e0p 42 3 were be VBD cord-265978-i0fu8e0p 42 4 included include VBN cord-265978-i0fu8e0p 42 5 as as IN cord-265978-i0fu8e0p 42 6 negative negative JJ cord-265978-i0fu8e0p 42 7 controls control NNS cord-265978-i0fu8e0p 42 8 . . . cord-265978-i0fu8e0p 43 1 A a DT cord-265978-i0fu8e0p 43 2 total total NN cord-265978-i0fu8e0p 43 3 of of IN cord-265978-i0fu8e0p 43 4 103 103 CD cord-265978-i0fu8e0p 43 5 bovine bovine JJ cord-265978-i0fu8e0p 43 6 clinical clinical JJ cord-265978-i0fu8e0p 43 7 samples sample NNS cord-265978-i0fu8e0p 43 8 were be VBD cord-265978-i0fu8e0p 43 9 collected collect VBN cord-265978-i0fu8e0p 43 10 from from IN cord-265978-i0fu8e0p 43 11 affected affected JJ cord-265978-i0fu8e0p 43 12 cases case NNS cord-265978-i0fu8e0p 43 13 with with IN cord-265978-i0fu8e0p 43 14 respiratory respiratory JJ cord-265978-i0fu8e0p 43 15 and/or and/or CC cord-265978-i0fu8e0p 43 16 enteric enteric JJ cord-265978-i0fu8e0p 43 17 manifestations manifestation NNS cord-265978-i0fu8e0p 43 18 . . . cord-265978-i0fu8e0p 44 1 These these DT cord-265978-i0fu8e0p 44 2 samples sample NNS cord-265978-i0fu8e0p 44 3 included include VBD cord-265978-i0fu8e0p 44 4 68 68 CD cord-265978-i0fu8e0p 44 5 fecal fecal JJ cord-265978-i0fu8e0p 44 6 and and CC cord-265978-i0fu8e0p 44 7 35 35 CD cord-265978-i0fu8e0p 44 8 nasal nasal NN cord-265978-i0fu8e0p 44 9 swabs swab NNS cord-265978-i0fu8e0p 44 10 . . . cord-265978-i0fu8e0p 45 1 Swabs swab NNS cord-265978-i0fu8e0p 45 2 from from IN cord-265978-i0fu8e0p 45 3 BCoVfree bcovfree JJ cord-265978-i0fu8e0p 45 4 calves calf NNS cord-265978-i0fu8e0p 45 5 were be VBD cord-265978-i0fu8e0p 45 6 also also RB cord-265978-i0fu8e0p 45 7 included include VBN cord-265978-i0fu8e0p 45 8 to to TO cord-265978-i0fu8e0p 45 9 serve serve VB cord-265978-i0fu8e0p 45 10 as as IN cord-265978-i0fu8e0p 45 11 negative negative JJ cord-265978-i0fu8e0p 45 12 controls control NNS cord-265978-i0fu8e0p 45 13 and and CC cord-265978-i0fu8e0p 45 14 matrices matrix NNS cord-265978-i0fu8e0p 45 15 for for IN cord-265978-i0fu8e0p 45 16 sensitivity sensitivity NN cord-265978-i0fu8e0p 45 17 testing testing NN cord-265978-i0fu8e0p 45 18 . . . cord-265978-i0fu8e0p 46 1 Immediately immediately RB cord-265978-i0fu8e0p 46 2 after after IN cord-265978-i0fu8e0p 46 3 collection collection NN cord-265978-i0fu8e0p 46 4 , , , cord-265978-i0fu8e0p 46 5 swabs swab NNS cord-265978-i0fu8e0p 46 6 were be VBD cord-265978-i0fu8e0p 46 7 placed place VBN cord-265978-i0fu8e0p 46 8 in in IN cord-265978-i0fu8e0p 46 9 1 1 CD cord-265978-i0fu8e0p 46 10 ml ml NN cord-265978-i0fu8e0p 46 11 viral viral JJ cord-265978-i0fu8e0p 46 12 transport transport NN cord-265978-i0fu8e0p 46 13 medium medium NN cord-265978-i0fu8e0p 46 14 consisting consist VBG cord-265978-i0fu8e0p 46 15 of of IN cord-265978-i0fu8e0p 46 16 Minimal minimal JJ cord-265978-i0fu8e0p 46 17 essential essential JJ cord-265978-i0fu8e0p 46 18 medium medium NN cord-265978-i0fu8e0p 46 19 ( ( -LRB- cord-265978-i0fu8e0p 46 20 MEM MEM NNP cord-265978-i0fu8e0p 46 21 ) ) -RRB- cord-265978-i0fu8e0p 46 22 , , , cord-265978-i0fu8e0p 46 23 500 500 CD cord-265978-i0fu8e0p 46 24 U u NN cord-265978-i0fu8e0p 46 25 penicillin penicillin NN cord-265978-i0fu8e0p 46 26 and and CC cord-265978-i0fu8e0p 46 27 500 500 CD cord-265978-i0fu8e0p 46 28 mg mg NN cord-265978-i0fu8e0p 46 29 streptomycin streptomycin NNS cord-265978-i0fu8e0p 46 30 ; ; , cord-265978-i0fu8e0p 46 31 transported transport VBN cord-265978-i0fu8e0p 46 32 on on IN cord-265978-i0fu8e0p 46 33 dry dry JJ cord-265978-i0fu8e0p 46 34 ice ice NN cord-265978-i0fu8e0p 46 35 and and CC cord-265978-i0fu8e0p 46 36 stored store VBN cord-265978-i0fu8e0p 46 37 directly directly RB cord-265978-i0fu8e0p 46 38 at at IN cord-265978-i0fu8e0p 46 39 À80 À80 NNP cord-265978-i0fu8e0p 46 40 C C NNP cord-265978-i0fu8e0p 46 41 until until IN cord-265978-i0fu8e0p 46 42 processing processing NN cord-265978-i0fu8e0p 46 43 . . . cord-265978-i0fu8e0p 47 1 For for IN cord-265978-i0fu8e0p 47 2 sample sample NN cord-265978-i0fu8e0p 47 3 preparation preparation NN cord-265978-i0fu8e0p 47 4 , , , cord-265978-i0fu8e0p 47 5 all all DT cord-265978-i0fu8e0p 47 6 swabs swab NNS cord-265978-i0fu8e0p 47 7 were be VBD cord-265978-i0fu8e0p 47 8 discarded discard VBN cord-265978-i0fu8e0p 47 9 after after IN cord-265978-i0fu8e0p 47 10 pulse pulse NN cord-265978-i0fu8e0p 47 11 - - HYPH cord-265978-i0fu8e0p 47 12 vortexing vortexing NN cord-265978-i0fu8e0p 47 13 for for IN cord-265978-i0fu8e0p 47 14 15 15 CD cord-265978-i0fu8e0p 47 15 s s NN cord-265978-i0fu8e0p 47 16 ; ; : cord-265978-i0fu8e0p 47 17 sample sample NN cord-265978-i0fu8e0p 47 18 suspension suspension NN cord-265978-i0fu8e0p 47 19 was be VBD cord-265978-i0fu8e0p 47 20 diluted dilute VBN cord-265978-i0fu8e0p 47 21 1:10 1:10 CD cord-265978-i0fu8e0p 47 22 in in IN cord-265978-i0fu8e0p 47 23 MEM mem NN cord-265978-i0fu8e0p 47 24 and and CC cord-265978-i0fu8e0p 47 25 clarified clarify VBN cord-265978-i0fu8e0p 47 26 by by IN cord-265978-i0fu8e0p 47 27 centrifugation centrifugation NN cord-265978-i0fu8e0p 47 28 at at IN cord-265978-i0fu8e0p 47 29 5000 5000 CD cord-265978-i0fu8e0p 47 30 rpm rpm NN cord-265978-i0fu8e0p 47 31 for for IN cord-265978-i0fu8e0p 47 32 15 15 CD cord-265978-i0fu8e0p 47 33 min min NN cord-265978-i0fu8e0p 47 34 at at IN cord-265978-i0fu8e0p 47 35 4 4 CD cord-265978-i0fu8e0p 47 36 C. c. NN cord-265978-i0fu8e0p 48 1 The the DT cord-265978-i0fu8e0p 48 2 supernatant supernatant NN cord-265978-i0fu8e0p 48 3 was be VBD cord-265978-i0fu8e0p 48 4 transferred transfer VBN cord-265978-i0fu8e0p 48 5 to to IN cord-265978-i0fu8e0p 48 6 sterile sterile JJ cord-265978-i0fu8e0p 48 7 vials vial NNS cord-265978-i0fu8e0p 48 8 where where WRB cord-265978-i0fu8e0p 48 9 aliquots aliquot NNS cord-265978-i0fu8e0p 48 10 of of IN cord-265978-i0fu8e0p 48 11 140 140 CD cord-265978-i0fu8e0p 48 12 ml ml NNS cord-265978-i0fu8e0p 48 13 were be VBD cord-265978-i0fu8e0p 48 14 used use VBN cord-265978-i0fu8e0p 48 15 for for IN cord-265978-i0fu8e0p 48 16 viral viral JJ cord-265978-i0fu8e0p 48 17 RNA RNA NNP cord-265978-i0fu8e0p 48 18 extraction extraction NN cord-265978-i0fu8e0p 48 19 and and CC cord-265978-i0fu8e0p 48 20 the the DT cord-265978-i0fu8e0p 48 21 rest rest NN cord-265978-i0fu8e0p 48 22 was be VBD cord-265978-i0fu8e0p 48 23 stored store VBN cord-265978-i0fu8e0p 48 24 at at IN cord-265978-i0fu8e0p 48 25 À80 À80 NNP cord-265978-i0fu8e0p 48 26 C. C. NNP cord-265978-i0fu8e0p 49 1 The the DT cord-265978-i0fu8e0p 49 2 N n CD cord-265978-i0fu8e0p 49 3 gene gene NN cord-265978-i0fu8e0p 49 4 sequences sequence NNS cord-265978-i0fu8e0p 49 5 from from IN cord-265978-i0fu8e0p 49 6 28 28 CD cord-265978-i0fu8e0p 49 7 BCoV BCoV NNP cord-265978-i0fu8e0p 49 8 known know VBN cord-265978-i0fu8e0p 49 9 isolates isolate NNS cord-265978-i0fu8e0p 49 10 worldwide worldwide RB cord-265978-i0fu8e0p 49 11 were be VBD cord-265978-i0fu8e0p 49 12 aligned align VBN cord-265978-i0fu8e0p 49 13 with with IN cord-265978-i0fu8e0p 49 14 the the DT cord-265978-i0fu8e0p 49 15 Clustal Clustal NNP cord-265978-i0fu8e0p 49 16 W W NNP cord-265978-i0fu8e0p 49 17 method method NN cord-265978-i0fu8e0p 49 18 available available JJ cord-265978-i0fu8e0p 49 19 as as IN cord-265978-i0fu8e0p 49 20 part part NN cord-265978-i0fu8e0p 49 21 of of IN cord-265978-i0fu8e0p 49 22 the the DT cord-265978-i0fu8e0p 49 23 Megalign Megalign NNP cord-265978-i0fu8e0p 49 24 program program NN cord-265978-i0fu8e0p 49 25 in in IN cord-265978-i0fu8e0p 49 26 the the DT cord-265978-i0fu8e0p 49 27 Lasergene Lasergene NNP cord-265978-i0fu8e0p 49 28 sequence sequence NN cord-265978-i0fu8e0p 49 29 analysis analysis NN cord-265978-i0fu8e0p 49 30 package package NN cord-265978-i0fu8e0p 49 31 version version NN cord-265978-i0fu8e0p 49 32 3.18 3.18 CD cord-265978-i0fu8e0p 49 33 ( ( -LRB- cord-265978-i0fu8e0p 49 34 DNAStar dnastar NN cord-265978-i0fu8e0p 49 35 , , , cord-265978-i0fu8e0p 49 36 Madison Madison NNP cord-265978-i0fu8e0p 49 37 , , , cord-265978-i0fu8e0p 49 38 WI WI NNP cord-265978-i0fu8e0p 49 39 , , , cord-265978-i0fu8e0p 49 40 USA USA NNP cord-265978-i0fu8e0p 49 41 ) ) -RRB- cord-265978-i0fu8e0p 49 42 . . . cord-265978-i0fu8e0p 50 1 A a DT cord-265978-i0fu8e0p 50 2 specific specific JJ cord-265978-i0fu8e0p 50 3 oligonucleotide oligonucleotide JJ cord-265978-i0fu8e0p 50 4 primer primer NN cord-265978-i0fu8e0p 50 5 set set NN cord-265978-i0fu8e0p 50 6 was be VBD cord-265978-i0fu8e0p 50 7 designed design VBN cord-265978-i0fu8e0p 50 8 with with IN cord-265978-i0fu8e0p 50 9 the the DT cord-265978-i0fu8e0p 50 10 Primer3 Primer3 NNP cord-265978-i0fu8e0p 50 11 program program NN cord-265978-i0fu8e0p 50 12 ( ( -LRB- cord-265978-i0fu8e0p 50 13 Agilent Agilent NNP cord-265978-i0fu8e0p 50 14 Technologies Technologies NNP cord-265978-i0fu8e0p 50 15 , , , cord-265978-i0fu8e0p 50 16 Santa Santa NNP cord-265978-i0fu8e0p 50 17 Clara Clara NNP cord-265978-i0fu8e0p 50 18 , , , cord-265978-i0fu8e0p 50 19 CA CA NNP cord-265978-i0fu8e0p 50 20 , , , cord-265978-i0fu8e0p 50 21 USA USA NNP cord-265978-i0fu8e0p 50 22 ) ) -RRB- cord-265978-i0fu8e0p 50 23 for for IN cord-265978-i0fu8e0p 50 24 use use NN cord-265978-i0fu8e0p 50 25 in in IN cord-265978-i0fu8e0p 50 26 real real JJ cord-265978-i0fu8e0p 50 27 - - HYPH cord-265978-i0fu8e0p 50 28 time time NN cord-265978-i0fu8e0p 50 29 PCR PCR NNP cord-265978-i0fu8e0p 50 30 to to TO cord-265978-i0fu8e0p 50 31 amplify amplify VB cord-265978-i0fu8e0p 50 32 as as RB cord-265978-i0fu8e0p 50 33 many many JJ cord-265978-i0fu8e0p 50 34 as as IN cord-265978-i0fu8e0p 50 35 BCoV BCoV NNP cord-265978-i0fu8e0p 50 36 strains strain NNS cord-265978-i0fu8e0p 50 37 as as RB cord-265978-i0fu8e0p 50 38 theoretically theoretically RB cord-265978-i0fu8e0p 50 39 possible possible JJ cord-265978-i0fu8e0p 50 40 . . . cord-265978-i0fu8e0p 51 1 No no DT cord-265978-i0fu8e0p 51 2 sequence sequence NN cord-265978-i0fu8e0p 51 3 homology homology NN cord-265978-i0fu8e0p 51 4 revealed reveal VBD cord-265978-i0fu8e0p 51 5 using use VBG cord-265978-i0fu8e0p 51 6 these these DT cord-265978-i0fu8e0p 51 7 primers primer NNS cord-265978-i0fu8e0p 51 8 with with IN cord-265978-i0fu8e0p 51 9 group group NN cord-265978-i0fu8e0p 51 10 1 1 CD cord-265978-i0fu8e0p 51 11 and and CC cord-265978-i0fu8e0p 51 12 3 3 CD cord-265978-i0fu8e0p 51 13 coronaviruses coronaviruse NNS cord-265978-i0fu8e0p 51 14 , , , cord-265978-i0fu8e0p 51 15 however however RB cord-265978-i0fu8e0p 51 16 , , , cord-265978-i0fu8e0p 51 17 cross cross VBP cord-265978-i0fu8e0p 51 18 reactivity reactivity NN cord-265978-i0fu8e0p 51 19 with with IN cord-265978-i0fu8e0p 51 20 members member NNS cord-265978-i0fu8e0p 51 21 of of IN cord-265978-i0fu8e0p 51 22 group group NN cord-265978-i0fu8e0p 51 23 2 2 CD cord-265978-i0fu8e0p 51 24 coronaviruses coronaviruse NNS cord-265978-i0fu8e0p 51 25 is be VBZ cord-265978-i0fu8e0p 51 26 expected expect VBN cord-265978-i0fu8e0p 51 27 . . . cord-265978-i0fu8e0p 52 1 Previously previously RB cord-265978-i0fu8e0p 52 2 described describe VBN cord-265978-i0fu8e0p 52 3 primers primer NNS cord-265978-i0fu8e0p 52 4 for for IN cord-265978-i0fu8e0p 52 5 amplification amplification NN cord-265978-i0fu8e0p 52 6 of of IN cord-265978-i0fu8e0p 52 7 the the DT cord-265978-i0fu8e0p 52 8 entire entire JJ cord-265978-i0fu8e0p 52 9 N n CD cord-265978-i0fu8e0p 52 10 gene gene NN cord-265978-i0fu8e0p 52 11 were be VBD cord-265978-i0fu8e0p 52 12 used use VBN cord-265978-i0fu8e0p 52 13 in in IN cord-265978-i0fu8e0p 52 14 construction construction NN cord-265978-i0fu8e0p 52 15 of of IN cord-265978-i0fu8e0p 52 16 the the DT cord-265978-i0fu8e0p 52 17 quantification quantification NN cord-265978-i0fu8e0p 52 18 standards standard NNS cord-265978-i0fu8e0p 53 1 ( ( -LRB- cord-265978-i0fu8e0p 53 2 Amer Amer NNP cord-265978-i0fu8e0p 53 3 et et NNP cord-265978-i0fu8e0p 53 4 al al NNP cord-265978-i0fu8e0p 53 5 . . NNP cord-265978-i0fu8e0p 53 6 , , , cord-265978-i0fu8e0p 53 7 2008 2008 CD cord-265978-i0fu8e0p 53 8 ) ) -RRB- cord-265978-i0fu8e0p 53 9 . . . cord-265978-i0fu8e0p 54 1 Internal internal JJ cord-265978-i0fu8e0p 54 2 control control NN cord-265978-i0fu8e0p 54 3 primers primer NNS cord-265978-i0fu8e0p 54 4 were be VBD cord-265978-i0fu8e0p 54 5 designed design VBN cord-265978-i0fu8e0p 54 6 on on IN cord-265978-i0fu8e0p 54 7 the the DT cord-265978-i0fu8e0p 54 8 basis basis NN cord-265978-i0fu8e0p 54 9 of of IN cord-265978-i0fu8e0p 54 10 highly highly RB cord-265978-i0fu8e0p 54 11 conserved conserved JJ cord-265978-i0fu8e0p 54 12 sequences sequence NNS cord-265978-i0fu8e0p 54 13 in in IN cord-265978-i0fu8e0p 54 14 the the DT cord-265978-i0fu8e0p 54 15 bovine bovine JJ cord-265978-i0fu8e0p 54 16 glyceraldehyde-3-phosphate glyceraldehyde-3-phosphate NNP cord-265978-i0fu8e0p 54 17 dehydrogenase dehydrogenase NN cord-265978-i0fu8e0p 54 18 ( ( -LRB- cord-265978-i0fu8e0p 54 19 BGAPDH BGAPDH NNP cord-265978-i0fu8e0p 54 20 ) ) -RRB- cord-265978-i0fu8e0p 54 21 gene gene NN cord-265978-i0fu8e0p 54 22 for for IN cord-265978-i0fu8e0p 54 23 use use NN cord-265978-i0fu8e0p 54 24 in in IN cord-265978-i0fu8e0p 54 25 validation validation NN cord-265978-i0fu8e0p 54 26 of of IN cord-265978-i0fu8e0p 54 27 RNA RNA NNP cord-265978-i0fu8e0p 54 28 extraction extraction NN cord-265978-i0fu8e0p 54 29 , , , cord-265978-i0fu8e0p 54 30 cDNA cdna NN cord-265978-i0fu8e0p 54 31 synthesis synthesis NN cord-265978-i0fu8e0p 54 32 and and CC cord-265978-i0fu8e0p 54 33 qPCR qPCR NNP cord-265978-i0fu8e0p 54 34 steps step NNS cord-265978-i0fu8e0p 54 35 . . . cord-265978-i0fu8e0p 55 1 All all DT cord-265978-i0fu8e0p 55 2 primers primer NNS cord-265978-i0fu8e0p 55 3 were be VBD cord-265978-i0fu8e0p 55 4 synthesized synthesize VBN cord-265978-i0fu8e0p 55 5 at at IN cord-265978-i0fu8e0p 55 6 Metabion Metabion NNP cord-265978-i0fu8e0p 55 7 ( ( -LRB- cord-265978-i0fu8e0p 55 8 Martinsried Martinsried NNP cord-265978-i0fu8e0p 55 9 , , , cord-265978-i0fu8e0p 55 10 Germany Germany NNP cord-265978-i0fu8e0p 55 11 ) ) -RRB- cord-265978-i0fu8e0p 55 12 . . . cord-265978-i0fu8e0p 56 1 Details detail NNS cord-265978-i0fu8e0p 56 2 of of IN cord-265978-i0fu8e0p 56 3 primers primer NNS cord-265978-i0fu8e0p 56 4 sequences sequence NNS cord-265978-i0fu8e0p 56 5 and and CC cord-265978-i0fu8e0p 56 6 locations location NNS cord-265978-i0fu8e0p 56 7 are be VBP cord-265978-i0fu8e0p 56 8 listed list VBN cord-265978-i0fu8e0p 56 9 in in IN cord-265978-i0fu8e0p 56 10 Table Table NNP cord-265978-i0fu8e0p 56 11 2 2 CD cord-265978-i0fu8e0p 56 12 . . . cord-265978-i0fu8e0p 57 1 Viral Viral NNP cord-265978-i0fu8e0p 57 2 RNA RNA NNP cord-265978-i0fu8e0p 57 3 was be VBD cord-265978-i0fu8e0p 57 4 extracted extract VBN cord-265978-i0fu8e0p 57 5 from from IN cord-265978-i0fu8e0p 57 6 the the DT cord-265978-i0fu8e0p 57 7 different different JJ cord-265978-i0fu8e0p 57 8 virus virus NN cord-265978-i0fu8e0p 57 9 strains strain NNS cord-265978-i0fu8e0p 57 10 and and CC cord-265978-i0fu8e0p 57 11 clinical clinical JJ cord-265978-i0fu8e0p 57 12 samples sample NNS cord-265978-i0fu8e0p 57 13 using use VBG cord-265978-i0fu8e0p 57 14 the the DT cord-265978-i0fu8e0p 57 15 QIAamp QIAamp NNP cord-265978-i0fu8e0p 57 16 viral viral JJ cord-265978-i0fu8e0p 57 17 RNA RNA NNP cord-265978-i0fu8e0p 57 18 extraction extraction NN cord-265978-i0fu8e0p 57 19 kit kit NN cord-265978-i0fu8e0p 57 20 ( ( -LRB- cord-265978-i0fu8e0p 57 21 Qiagen Qiagen NNP cord-265978-i0fu8e0p 57 22 , , , cord-265978-i0fu8e0p 57 23 Hilden Hilden NNP cord-265978-i0fu8e0p 57 24 , , , cord-265978-i0fu8e0p 57 25 Germany Germany NNP cord-265978-i0fu8e0p 57 26 ) ) -RRB- cord-265978-i0fu8e0p 57 27 according accord VBG cord-265978-i0fu8e0p 57 28 to to IN cord-265978-i0fu8e0p 57 29 the the DT cord-265978-i0fu8e0p 57 30 manufacturer manufacturer NN cord-265978-i0fu8e0p 57 31 's 's POS cord-265978-i0fu8e0p 57 32 protocol protocol NN cord-265978-i0fu8e0p 57 33 . . . cord-265978-i0fu8e0p 58 1 The the DT cord-265978-i0fu8e0p 58 2 RNA RNA NNP cord-265978-i0fu8e0p 58 3 was be VBD cord-265978-i0fu8e0p 58 4 eluted elute VBN cord-265978-i0fu8e0p 58 5 in in IN cord-265978-i0fu8e0p 58 6 60 60 CD cord-265978-i0fu8e0p 58 7 ml ml NN cord-265978-i0fu8e0p 58 8 elution elution NN cord-265978-i0fu8e0p 58 9 buffer buffer NN cord-265978-i0fu8e0p 58 10 and and CC cord-265978-i0fu8e0p 58 11 used use VBN cord-265978-i0fu8e0p 58 12 directly directly RB cord-265978-i0fu8e0p 58 13 for for IN cord-265978-i0fu8e0p 58 14 reverse reverse JJ cord-265978-i0fu8e0p 58 15 transcription transcription NN cord-265978-i0fu8e0p 58 16 . . . cord-265978-i0fu8e0p 59 1 First first JJ cord-265978-i0fu8e0p 59 2 strand strand NN cord-265978-i0fu8e0p 59 3 cDNA cdna NN cord-265978-i0fu8e0p 59 4 synthesis synthesis NN cord-265978-i0fu8e0p 59 5 was be VBD cord-265978-i0fu8e0p 59 6 performed perform VBN cord-265978-i0fu8e0p 59 7 using use VBG cord-265978-i0fu8e0p 59 8 Sensiscript Sensiscript NNP cord-265978-i0fu8e0p 59 9 Ò Ò NNP cord-265978-i0fu8e0p 59 10 Reverse Reverse NNP cord-265978-i0fu8e0p 59 11 transcription transcription NN cord-265978-i0fu8e0p 59 12 kit kit NN cord-265978-i0fu8e0p 59 13 ( ( -LRB- cord-265978-i0fu8e0p 59 14 Qiagen Qiagen NNP cord-265978-i0fu8e0p 59 15 ) ) -RRB- cord-265978-i0fu8e0p 59 16 and and CC cord-265978-i0fu8e0p 59 17 random random JJ cord-265978-i0fu8e0p 59 18 hexameres hexamere NNS cord-265978-i0fu8e0p 59 19 ( ( -LRB- cord-265978-i0fu8e0p 59 20 Jena Jena NNP cord-265978-i0fu8e0p 59 21 Biosciences Biosciences NNP cord-265978-i0fu8e0p 59 22 Gmbl Gmbl NNP cord-265978-i0fu8e0p 59 23 , , , cord-265978-i0fu8e0p 59 24 Jena Jena NNP cord-265978-i0fu8e0p 59 25 , , , cord-265978-i0fu8e0p 59 26 Germany Germany NNP cord-265978-i0fu8e0p 59 27 ) ) -RRB- cord-265978-i0fu8e0p 59 28 according accord VBG cord-265978-i0fu8e0p 59 29 to to IN cord-265978-i0fu8e0p 59 30 the the DT cord-265978-i0fu8e0p 59 31 manufacturer manufacturer NN cord-265978-i0fu8e0p 59 32 's 's POS cord-265978-i0fu8e0p 59 33 guidelines guideline NNS cord-265978-i0fu8e0p 59 34 . . . cord-265978-i0fu8e0p 60 1 Briefly briefly RB cord-265978-i0fu8e0p 60 2 , , , cord-265978-i0fu8e0p 60 3 5 5 CD cord-265978-i0fu8e0p 60 4 mL ml NN cord-265978-i0fu8e0p 60 5 of of IN cord-265978-i0fu8e0p 60 6 purified purify VBN cord-265978-i0fu8e0p 60 7 RNA RNA NNP cord-265978-i0fu8e0p 60 8 were be VBD cord-265978-i0fu8e0p 60 9 added add VBN cord-265978-i0fu8e0p 60 10 to to IN cord-265978-i0fu8e0p 60 11 a a DT cord-265978-i0fu8e0p 60 12 mixture mixture NN cord-265978-i0fu8e0p 60 13 contained contain VBN cord-265978-i0fu8e0p 60 14 2 2 CD cord-265978-i0fu8e0p 60 15 ml ml NNS cord-265978-i0fu8e0p 60 16 of of IN cord-265978-i0fu8e0p 60 17 10Â 10â CD cord-265978-i0fu8e0p 60 18 buffer buffer NN cord-265978-i0fu8e0p 60 19 RT RT NNP cord-265978-i0fu8e0p 60 20 , , , cord-265978-i0fu8e0p 60 21 2 2 CD cord-265978-i0fu8e0p 60 22 ml ml NN cord-265978-i0fu8e0p 60 23 ( ( -LRB- cord-265978-i0fu8e0p 60 24 0.5 0.5 CD cord-265978-i0fu8e0p 60 25 mM mm CD cord-265978-i0fu8e0p 60 26 ) ) -RRB- cord-265978-i0fu8e0p 60 27 of of IN cord-265978-i0fu8e0p 60 28 dNTPs dntps CD cord-265978-i0fu8e0p 60 29 mix mix NN cord-265978-i0fu8e0p 60 30 , , , cord-265978-i0fu8e0p 60 31 2 2 CD cord-265978-i0fu8e0p 60 32 ml ml NN cord-265978-i0fu8e0p 60 33 ( ( -LRB- cord-265978-i0fu8e0p 60 34 200 200 CD cord-265978-i0fu8e0p 60 35 mM mm CD cord-265978-i0fu8e0p 60 36 ) ) -RRB- cord-265978-i0fu8e0p 60 37 of of IN cord-265978-i0fu8e0p 60 38 random random JJ cord-265978-i0fu8e0p 60 39 hexameres hexamere NNS cord-265978-i0fu8e0p 60 40 , , , cord-265978-i0fu8e0p 60 41 1 1 CD cord-265978-i0fu8e0p 60 42 ml ml NN cord-265978-i0fu8e0p 60 43 ( ( -LRB- cord-265978-i0fu8e0p 60 44 4 4 CD cord-265978-i0fu8e0p 60 45 U u NN cord-265978-i0fu8e0p 60 46 ) ) -RRB- cord-265978-i0fu8e0p 61 1 RNase rnase NN cord-265978-i0fu8e0p 61 2 inhibitor inhibitor NN cord-265978-i0fu8e0p 61 3 , , , cord-265978-i0fu8e0p 61 4 1 1 CD cord-265978-i0fu8e0p 61 5 ml ml NNS cord-265978-i0fu8e0p 61 6 of of IN cord-265978-i0fu8e0p 61 7 sensiscript sensiscript NNP cord-265978-i0fu8e0p 61 8 Ò Ò NNP cord-265978-i0fu8e0p 61 9 Reverse Reverse NNP cord-265978-i0fu8e0p 61 10 Transcriptase Transcriptase NNP cord-265978-i0fu8e0p 61 11 and and CC cord-265978-i0fu8e0p 61 12 7 7 CD cord-265978-i0fu8e0p 61 13 ml ml NNS cord-265978-i0fu8e0p 61 14 of of IN cord-265978-i0fu8e0p 61 15 RNase RNase NNP cord-265978-i0fu8e0p 61 16 free free JJ cord-265978-i0fu8e0p 61 17 water water NN cord-265978-i0fu8e0p 61 18 . . . cord-265978-i0fu8e0p 62 1 After after IN cord-265978-i0fu8e0p 62 2 incubation incubation NN cord-265978-i0fu8e0p 62 3 at at IN cord-265978-i0fu8e0p 62 4 37 37 CD cord-265978-i0fu8e0p 62 5 C c NN cord-265978-i0fu8e0p 62 6 for for IN cord-265978-i0fu8e0p 62 7 60 60 CD cord-265978-i0fu8e0p 62 8 min min NN cord-265978-i0fu8e0p 62 9 , , , cord-265978-i0fu8e0p 62 10 the the DT cord-265978-i0fu8e0p 62 11 mixture mixture NN cord-265978-i0fu8e0p 62 12 was be VBD cord-265978-i0fu8e0p 62 13 cooled cool VBN cord-265978-i0fu8e0p 62 14 to to IN cord-265978-i0fu8e0p 62 15 4 4 CD cord-265978-i0fu8e0p 62 16 C c NN cord-265978-i0fu8e0p 62 17 and and CC cord-265978-i0fu8e0p 62 18 stored store VBN cord-265978-i0fu8e0p 62 19 at at IN cord-265978-i0fu8e0p 62 20 À80 À80 NNP cord-265978-i0fu8e0p 62 21 C C NNP cord-265978-i0fu8e0p 62 22 until until IN cord-265978-i0fu8e0p 62 23 use use NN cord-265978-i0fu8e0p 62 24 . . . cord-265978-i0fu8e0p 63 1 The the DT cord-265978-i0fu8e0p 63 2 SYBR SYBR NNP cord-265978-i0fu8e0p 63 3 Green Green NNP cord-265978-i0fu8e0p 64 1 I -PRON- PRP cord-265978-i0fu8e0p 64 2 based base VBD cord-265978-i0fu8e0p 64 3 real real JJ cord-265978-i0fu8e0p 64 4 - - HYPH cord-265978-i0fu8e0p 64 5 time time NN cord-265978-i0fu8e0p 64 6 PCR PCR NNP cord-265978-i0fu8e0p 64 7 assay assay NN cord-265978-i0fu8e0p 64 8 was be VBD cord-265978-i0fu8e0p 64 9 performed perform VBN cord-265978-i0fu8e0p 64 10 on on IN cord-265978-i0fu8e0p 64 11 an an DT cord-265978-i0fu8e0p 64 12 ABI ABI NNP cord-265978-i0fu8e0p 64 13 Prism Prism NNP cord-265978-i0fu8e0p 64 14 7500 7500 CD cord-265978-i0fu8e0p 64 15 Sequence sequence NN cord-265978-i0fu8e0p 64 16 Detection detection NN cord-265978-i0fu8e0p 64 17 System system NN cord-265978-i0fu8e0p 64 18 ( ( -LRB- cord-265978-i0fu8e0p 64 19 Applied Applied NNP cord-265978-i0fu8e0p 64 20 Biosystems Biosystems NNP cord-265978-i0fu8e0p 64 21 , , , cord-265978-i0fu8e0p 64 22 Foster Foster NNP cord-265978-i0fu8e0p 64 23 City City NNP cord-265978-i0fu8e0p 64 24 , , , cord-265978-i0fu8e0p 64 25 CA CA NNP cord-265978-i0fu8e0p 64 26 , , , cord-265978-i0fu8e0p 64 27 USA USA NNP cord-265978-i0fu8e0p 64 28 ) ) -RRB- cord-265978-i0fu8e0p 64 29 using use VBG cord-265978-i0fu8e0p 64 30 QuantiTect QuantiTect NNP cord-265978-i0fu8e0p 64 31 SYBR SYBR NNP cord-265978-i0fu8e0p 64 32 Green Green NNP cord-265978-i0fu8e0p 64 33 PCR PCR NNP cord-265978-i0fu8e0p 64 34 Kit kit NN cord-265978-i0fu8e0p 64 35 ( ( -LRB- cord-265978-i0fu8e0p 64 36 Qiagen Qiagen NNP cord-265978-i0fu8e0p 64 37 ) ) -RRB- cord-265978-i0fu8e0p 64 38 . . . cord-265978-i0fu8e0p 65 1 The the DT cord-265978-i0fu8e0p 65 2 assay assay NN cord-265978-i0fu8e0p 65 3 was be VBD cord-265978-i0fu8e0p 65 4 carried carry VBN cord-265978-i0fu8e0p 65 5 out out RP cord-265978-i0fu8e0p 65 6 in in IN cord-265978-i0fu8e0p 65 7 a a DT cord-265978-i0fu8e0p 65 8 total total JJ cord-265978-i0fu8e0p 65 9 volume volume NN cord-265978-i0fu8e0p 65 10 of of IN cord-265978-i0fu8e0p 65 11 25 25 CD cord-265978-i0fu8e0p 65 12 ml ml NN cord-265978-i0fu8e0p 65 13 reaction reaction NN cord-265978-i0fu8e0p 65 14 mixture mixture NN cord-265978-i0fu8e0p 65 15 prepared prepare VBN cord-265978-i0fu8e0p 65 16 in in IN cord-265978-i0fu8e0p 65 17 triplicates triplicate NNS cord-265978-i0fu8e0p 65 18 in in IN cord-265978-i0fu8e0p 65 19 96-well 96-well CD cord-265978-i0fu8e0p 65 20 optical optical JJ cord-265978-i0fu8e0p 65 21 reaction reaction NN cord-265978-i0fu8e0p 65 22 plates plate NNS cord-265978-i0fu8e0p 65 23 or or CC cord-265978-i0fu8e0p 65 24 MicroAmp MicroAmp NNP cord-265978-i0fu8e0p 65 25 Ò ò NN cord-265978-i0fu8e0p 65 26 optical optical JJ cord-265978-i0fu8e0p 65 27 tubes tube NNS cord-265978-i0fu8e0p 65 28 ( ( -LRB- cord-265978-i0fu8e0p 65 29 Applied Applied NNP cord-265978-i0fu8e0p 65 30 Biosystems Biosystems NNP cord-265978-i0fu8e0p 65 31 ) ) -RRB- cord-265978-i0fu8e0p 65 32 . . . cord-265978-i0fu8e0p 66 1 The the DT cord-265978-i0fu8e0p 66 2 reaction reaction NN cord-265978-i0fu8e0p 66 3 conditions condition NNS cord-265978-i0fu8e0p 66 4 were be VBD cord-265978-i0fu8e0p 66 5 first first RB cord-265978-i0fu8e0p 66 6 optimized optimize VBN cord-265978-i0fu8e0p 66 7 by by IN cord-265978-i0fu8e0p 66 8 testing test VBG cord-265978-i0fu8e0p 66 9 variable variable JJ cord-265978-i0fu8e0p 66 10 concentrations concentration NNS cord-265978-i0fu8e0p 66 11 of of IN cord-265978-i0fu8e0p 66 12 BCoV BCoV NNP cord-265978-i0fu8e0p 66 13 and and CC cord-265978-i0fu8e0p 66 14 internal internal JJ cord-265978-i0fu8e0p 66 15 control control NN cord-265978-i0fu8e0p 66 16 QPCR QPCR NNP cord-265978-i0fu8e0p 66 17 primer primer NN cord-265978-i0fu8e0p 66 18 sets set NNS cord-265978-i0fu8e0p 66 19 ; ; : cord-265978-i0fu8e0p 66 20 MgCl MgCl NNP cord-265978-i0fu8e0p 66 21 2 2 CD cord-265978-i0fu8e0p 66 22 concentrations concentration NNS cord-265978-i0fu8e0p 66 23 ; ; : cord-265978-i0fu8e0p 66 24 template template NN cord-265978-i0fu8e0p 66 25 volumes volume NNS cord-265978-i0fu8e0p 66 26 and and CC cord-265978-i0fu8e0p 66 27 primer primer NN cord-265978-i0fu8e0p 66 28 annealing anneal VBG cord-265978-i0fu8e0p 66 29 Following follow VBG cord-265978-i0fu8e0p 66 30 amplification amplification NN cord-265978-i0fu8e0p 66 31 , , , cord-265978-i0fu8e0p 66 32 a a DT cord-265978-i0fu8e0p 66 33 melt melt NN cord-265978-i0fu8e0p 66 34 curve curve NN cord-265978-i0fu8e0p 66 35 analysis analysis NN cord-265978-i0fu8e0p 66 36 was be VBD cord-265978-i0fu8e0p 66 37 performed perform VBN cord-265978-i0fu8e0p 66 38 to to TO cord-265978-i0fu8e0p 66 39 verify verify VB cord-265978-i0fu8e0p 66 40 the the DT cord-265978-i0fu8e0p 66 41 specificity specificity NN cord-265978-i0fu8e0p 66 42 of of IN cord-265978-i0fu8e0p 66 43 the the DT cord-265978-i0fu8e0p 66 44 amplified amplify VBN cord-265978-i0fu8e0p 66 45 products product NNS cord-265978-i0fu8e0p 66 46 by by IN cord-265978-i0fu8e0p 66 47 their -PRON- PRP$ cord-265978-i0fu8e0p 66 48 specific specific JJ cord-265978-i0fu8e0p 66 49 melting melt VBG cord-265978-i0fu8e0p 66 50 temperatures temperature NNS cord-265978-i0fu8e0p 66 51 ( ( -LRB- cord-265978-i0fu8e0p 66 52 Tm Tm NNP cord-265978-i0fu8e0p 66 53 ) ) -RRB- cord-265978-i0fu8e0p 66 54 . . . cord-265978-i0fu8e0p 67 1 Melting melt VBG cord-265978-i0fu8e0p 67 2 curve curve NN cord-265978-i0fu8e0p 67 3 analysis analysis NN cord-265978-i0fu8e0p 67 4 consisted consist VBN cord-265978-i0fu8e0p 67 5 of of IN cord-265978-i0fu8e0p 67 6 a a DT cord-265978-i0fu8e0p 67 7 denaturation denaturation NN cord-265978-i0fu8e0p 67 8 step step NN cord-265978-i0fu8e0p 67 9 at at IN cord-265978-i0fu8e0p 67 10 95 95 CD cord-265978-i0fu8e0p 67 11 C c NN cord-265978-i0fu8e0p 67 12 for for IN cord-265978-i0fu8e0p 67 13 15 15 CD cord-265978-i0fu8e0p 67 14 s s NNS cord-265978-i0fu8e0p 67 15 , , , cord-265978-i0fu8e0p 67 16 decreased decrease VBD cord-265978-i0fu8e0p 67 17 to to IN cord-265978-i0fu8e0p 67 18 60 60 CD cord-265978-i0fu8e0p 67 19 C c NN cord-265978-i0fu8e0p 67 20 for for IN cord-265978-i0fu8e0p 67 21 1 1 CD cord-265978-i0fu8e0p 67 22 min min NN cord-265978-i0fu8e0p 67 23 , , , cord-265978-i0fu8e0p 67 24 and and CC cord-265978-i0fu8e0p 67 25 followed follow VBN cord-265978-i0fu8e0p 67 26 by by IN cord-265978-i0fu8e0p 67 27 temperature temperature NN cord-265978-i0fu8e0p 67 28 increase increase NN cord-265978-i0fu8e0p 67 29 to to IN cord-265978-i0fu8e0p 67 30 95 95 CD cord-265978-i0fu8e0p 67 31 C c NN cord-265978-i0fu8e0p 67 32 at at IN cord-265978-i0fu8e0p 67 33 a a DT cord-265978-i0fu8e0p 67 34 rate rate NN cord-265978-i0fu8e0p 67 35 of of IN cord-265978-i0fu8e0p 67 36 1 1 CD cord-265978-i0fu8e0p 67 37 % % NN cord-265978-i0fu8e0p 67 38 with with IN cord-265978-i0fu8e0p 67 39 continuous continuous JJ cord-265978-i0fu8e0p 67 40 reading reading NN cord-265978-i0fu8e0p 67 41 of of IN cord-265978-i0fu8e0p 67 42 fluorescence fluorescence NN cord-265978-i0fu8e0p 67 43 . . . cord-265978-i0fu8e0p 68 1 Data data NN cord-265978-i0fu8e0p 68 2 acquisition acquisition NN cord-265978-i0fu8e0p 68 3 and and CC cord-265978-i0fu8e0p 68 4 analysis analysis NN cord-265978-i0fu8e0p 68 5 of of IN cord-265978-i0fu8e0p 68 6 the the DT cord-265978-i0fu8e0p 68 7 results result NNS cord-265978-i0fu8e0p 68 8 were be VBD cord-265978-i0fu8e0p 68 9 performed perform VBN cord-265978-i0fu8e0p 68 10 using use VBG cord-265978-i0fu8e0p 68 11 the the DT cord-265978-i0fu8e0p 68 12 7500 7500 CD cord-265978-i0fu8e0p 68 13 System System NNP cord-265978-i0fu8e0p 68 14 SDS SDS NNP cord-265978-i0fu8e0p 68 15 Software Software NNP cord-265978-i0fu8e0p 68 16 Version Version NNP cord-265978-i0fu8e0p 68 17 2.0.1 2.0.1 CD cord-265978-i0fu8e0p 68 18 ( ( -LRB- cord-265978-i0fu8e0p 68 19 Applied Applied NNP cord-265978-i0fu8e0p 68 20 Biosystems Biosystems NNP cord-265978-i0fu8e0p 68 21 ) ) -RRB- cord-265978-i0fu8e0p 68 22 . . . cord-265978-i0fu8e0p 69 1 Each each DT cord-265978-i0fu8e0p 69 2 fluorescent fluorescent JJ cord-265978-i0fu8e0p 69 3 reporter reporter NN cord-265978-i0fu8e0p 69 4 signal signal NN cord-265978-i0fu8e0p 69 5 was be VBD cord-265978-i0fu8e0p 69 6 measured measure VBN cord-265978-i0fu8e0p 69 7 against against IN cord-265978-i0fu8e0p 69 8 the the DT cord-265978-i0fu8e0p 69 9 internal internal JJ cord-265978-i0fu8e0p 69 10 reference reference NN cord-265978-i0fu8e0p 69 11 dye dye NN cord-265978-i0fu8e0p 69 12 ( ( -LRB- cord-265978-i0fu8e0p 69 13 ROX rox NN cord-265978-i0fu8e0p 69 14 ) ) -RRB- cord-265978-i0fu8e0p 69 15 signal signal NN cord-265978-i0fu8e0p 69 16 to to TO cord-265978-i0fu8e0p 69 17 normalize normalize VB cord-265978-i0fu8e0p 69 18 for for IN cord-265978-i0fu8e0p 69 19 non non JJ cord-265978-i0fu8e0p 69 20 - - JJ cord-265978-i0fu8e0p 69 21 PCR pcr JJ cord-265978-i0fu8e0p 69 22 related related JJ cord-265978-i0fu8e0p 69 23 fluorescence fluorescence NN cord-265978-i0fu8e0p 69 24 fluctuations fluctuation NNS cord-265978-i0fu8e0p 69 25 between between IN cord-265978-i0fu8e0p 69 26 wells well NNS cord-265978-i0fu8e0p 69 27 . . . cord-265978-i0fu8e0p 70 1 The the DT cord-265978-i0fu8e0p 70 2 fluorescence fluorescence NN cord-265978-i0fu8e0p 70 3 threshold threshold NN cord-265978-i0fu8e0p 70 4 limit limit NN cord-265978-i0fu8e0p 70 5 of of IN cord-265978-i0fu8e0p 70 6 the the DT cord-265978-i0fu8e0p 70 7 ABI ABI NNP cord-265978-i0fu8e0p 70 8 Prism Prism NNP cord-265978-i0fu8e0p 70 9 7500 7500 CD cord-265978-i0fu8e0p 70 10 system system NN cord-265978-i0fu8e0p 70 11 was be VBD cord-265978-i0fu8e0p 70 12 set set VBN cord-265978-i0fu8e0p 70 13 at at IN cord-265978-i0fu8e0p 70 14 0.02 0.02 CD cord-265978-i0fu8e0p 70 15 as as IN cord-265978-i0fu8e0p 70 16 recommended recommend VBN cord-265978-i0fu8e0p 70 17 by by IN cord-265978-i0fu8e0p 70 18 the the DT cord-265978-i0fu8e0p 70 19 manufacturer manufacturer NN cord-265978-i0fu8e0p 70 20 . . . cord-265978-i0fu8e0p 70 21 _SP cord-265978-i0fu8e0p 71 1 A a DT cord-265978-i0fu8e0p 71 2 fragment fragment NN cord-265978-i0fu8e0p 71 3 of of IN cord-265978-i0fu8e0p 71 4 1420 1420 CD cord-265978-i0fu8e0p 71 5 bp bp NNP cord-265978-i0fu8e0p 71 6 containing contain VBG cord-265978-i0fu8e0p 71 7 the the DT cord-265978-i0fu8e0p 71 8 entire entire JJ cord-265978-i0fu8e0p 71 9 sequence sequence NN cord-265978-i0fu8e0p 71 10 of of IN cord-265978-i0fu8e0p 71 11 BCoV BCoV NNP cord-265978-i0fu8e0p 71 12 N N NNP cord-265978-i0fu8e0p 71 13 gene gene NN cord-265978-i0fu8e0p 71 14 was be VBD cord-265978-i0fu8e0p 71 15 amplified amplify VBN cord-265978-i0fu8e0p 71 16 using use VBG cord-265978-i0fu8e0p 71 17 the the DT cord-265978-i0fu8e0p 71 18 primer primer NN cord-265978-i0fu8e0p 71 19 pair pair NN cord-265978-i0fu8e0p 71 20 BCoV BCoV NNP cord-265978-i0fu8e0p 71 21 - - HYPH cord-265978-i0fu8e0p 71 22 NF NF NNP cord-265978-i0fu8e0p 71 23 / / SYM cord-265978-i0fu8e0p 71 24 BCoV BCoV NNP cord-265978-i0fu8e0p 71 25 - - HYPH cord-265978-i0fu8e0p 71 26 NR NR NNP cord-265978-i0fu8e0p 71 27 ( ( -LRB- cord-265978-i0fu8e0p 71 28 Table table NN cord-265978-i0fu8e0p 71 29 2 2 CD cord-265978-i0fu8e0p 71 30 ) ) -RRB- cord-265978-i0fu8e0p 71 31 [ [ -LRB- cord-265978-i0fu8e0p 71 32 14 14 CD cord-265978-i0fu8e0p 71 33 ] ] -RRB- cord-265978-i0fu8e0p 71 34 . . . cord-265978-i0fu8e0p 72 1 The the DT cord-265978-i0fu8e0p 72 2 RT RT NNP cord-265978-i0fu8e0p 72 3 - - HYPH cord-265978-i0fu8e0p 72 4 PCR PCR NNP cord-265978-i0fu8e0p 72 5 product product NN cord-265978-i0fu8e0p 72 6 was be VBD cord-265978-i0fu8e0p 72 7 cloned clone VBN cord-265978-i0fu8e0p 72 8 into into IN cord-265978-i0fu8e0p 72 9 pCR pCR NNP cord-265978-i0fu8e0p 72 10 Ò Ò NNP cord-265978-i0fu8e0p 72 11 4-TOPO 4-topo CD cord-265978-i0fu8e0p 72 12 vector vector NN cord-265978-i0fu8e0p 72 13 ( ( -LRB- cord-265978-i0fu8e0p 72 14 Invitrogen Invitrogen NNP cord-265978-i0fu8e0p 72 15 , , , cord-265978-i0fu8e0p 72 16 Carlsbad Carlsbad NNP cord-265978-i0fu8e0p 72 17 , , , cord-265978-i0fu8e0p 72 18 CA CA NNP cord-265978-i0fu8e0p 72 19 , , , cord-265978-i0fu8e0p 72 20 USA USA NNP cord-265978-i0fu8e0p 72 21 ) ) -RRB- cord-265978-i0fu8e0p 72 22 according accord VBG cord-265978-i0fu8e0p 72 23 to to IN cord-265978-i0fu8e0p 72 24 the the DT cord-265978-i0fu8e0p 72 25 manufacturer manufacturer NN cord-265978-i0fu8e0p 72 26 guidelines guideline NNS cord-265978-i0fu8e0p 72 27 . . . cord-265978-i0fu8e0p 73 1 Plasmid Plasmid NNP cord-265978-i0fu8e0p 73 2 DNA DNA NNP cord-265978-i0fu8e0p 73 3 was be VBD cord-265978-i0fu8e0p 73 4 recovered recover VBN cord-265978-i0fu8e0p 73 5 from from IN cord-265978-i0fu8e0p 73 6 the the DT cord-265978-i0fu8e0p 73 7 transformed transform VBN cord-265978-i0fu8e0p 73 8 Escherichia Escherichia NNP cord-265978-i0fu8e0p 73 9 . . . cord-265978-i0fu8e0p 74 1 coli coli NNS cord-265978-i0fu8e0p 74 2 using use VBG cord-265978-i0fu8e0p 74 3 the the DT cord-265978-i0fu8e0p 74 4 QIAprep QIAprep NNP cord-265978-i0fu8e0p 74 5 Spin Spin NNP cord-265978-i0fu8e0p 74 6 Miniprep Miniprep NNP cord-265978-i0fu8e0p 74 7 Kit kit NN cord-265978-i0fu8e0p 74 8 ( ( -LRB- cord-265978-i0fu8e0p 74 9 Qiagen Qiagen NNP cord-265978-i0fu8e0p 74 10 ) ) -RRB- cord-265978-i0fu8e0p 74 11 as as IN cord-265978-i0fu8e0p 74 12 directed direct VBN cord-265978-i0fu8e0p 74 13 by by IN cord-265978-i0fu8e0p 74 14 the the DT cord-265978-i0fu8e0p 74 15 manufacturer manufacturer NN cord-265978-i0fu8e0p 74 16 and and CC cord-265978-i0fu8e0p 74 17 quantified quantify VBN cord-265978-i0fu8e0p 74 18 by by IN cord-265978-i0fu8e0p 74 19 spectrophotometric spectrophotometric JJ cord-265978-i0fu8e0p 74 20 analysis analysis NN cord-265978-i0fu8e0p 74 21 . . . cord-265978-i0fu8e0p 75 1 Appropriate appropriate JJ cord-265978-i0fu8e0p 75 2 clones clone NNS cord-265978-i0fu8e0p 75 3 were be VBD cord-265978-i0fu8e0p 75 4 verified verify VBN cord-265978-i0fu8e0p 75 5 by by IN cord-265978-i0fu8e0p 75 6 restriction restriction NN cord-265978-i0fu8e0p 75 7 endonuclease endonuclease NN cord-265978-i0fu8e0p 75 8 digestion digestion NN cord-265978-i0fu8e0p 75 9 and and CC cord-265978-i0fu8e0p 75 10 DNA dna NN cord-265978-i0fu8e0p 75 11 sequencing sequencing NN cord-265978-i0fu8e0p 75 12 . . . cord-265978-i0fu8e0p 76 1 Plasmid Plasmid NNP cord-265978-i0fu8e0p 76 2 copy copy NN cord-265978-i0fu8e0p 76 3 numbers number NNS cord-265978-i0fu8e0p 76 4 were be VBD cord-265978-i0fu8e0p 76 5 calculated calculate VBN cord-265978-i0fu8e0p 76 6 using use VBG cord-265978-i0fu8e0p 76 7 the the DT cord-265978-i0fu8e0p 76 8 formula formula NN cord-265978-i0fu8e0p 76 9 described describe VBN cord-265978-i0fu8e0p 76 10 by by IN cord-265978-i0fu8e0p 76 11 Ke Ke NNP cord-265978-i0fu8e0p 76 12 et et NNP cord-265978-i0fu8e0p 76 13 al al NNP cord-265978-i0fu8e0p 76 14 . . . cord-265978-i0fu8e0p 77 1 [ [ -LRB- cord-265978-i0fu8e0p 77 2 15 15 CD cord-265978-i0fu8e0p 77 3 ] ] -RRB- cord-265978-i0fu8e0p 77 4 , , , cord-265978-i0fu8e0p 77 5 . . . cord-265978-i0fu8e0p 78 1 A a DT cord-265978-i0fu8e0p 78 2 master master NN cord-265978-i0fu8e0p 78 3 stock stock NN cord-265978-i0fu8e0p 78 4 containing contain VBG cord-265978-i0fu8e0p 78 5 5 5 CD cord-265978-i0fu8e0p 78 6 Â â CD cord-265978-i0fu8e0p 78 7 10 10 CD cord-265978-i0fu8e0p 78 8 8 8 CD cord-265978-i0fu8e0p 78 9 copies copy NNS cord-265978-i0fu8e0p 78 10 / / SYM cord-265978-i0fu8e0p 78 11 ml ml NNS cord-265978-i0fu8e0p 78 12 was be VBD cord-265978-i0fu8e0p 78 13 used use VBN cord-265978-i0fu8e0p 78 14 for for IN cord-265978-i0fu8e0p 78 15 preparation preparation NN cord-265978-i0fu8e0p 78 16 of of IN cord-265978-i0fu8e0p 78 17 10-fold 10-fold CD cord-265978-i0fu8e0p 78 18 dilution dilution NN cord-265978-i0fu8e0p 78 19 series series NN cord-265978-i0fu8e0p 78 20 to to TO cord-265978-i0fu8e0p 78 21 generate generate VB cord-265978-i0fu8e0p 78 22 the the DT cord-265978-i0fu8e0p 78 23 standard standard JJ cord-265978-i0fu8e0p 78 24 curve curve NN cord-265978-i0fu8e0p 78 25 and and CC cord-265978-i0fu8e0p 78 26 to to TO cord-265978-i0fu8e0p 78 27 test test VB cord-265978-i0fu8e0p 78 28 sensitivity sensitivity NN cord-265978-i0fu8e0p 78 29 and and CC cord-265978-i0fu8e0p 78 30 reproducibility reproducibility NN cord-265978-i0fu8e0p 78 31 of of IN cord-265978-i0fu8e0p 78 32 the the DT cord-265978-i0fu8e0p 78 33 assay assay NN cord-265978-i0fu8e0p 78 34 . . . cord-265978-i0fu8e0p 79 1 The the DT cord-265978-i0fu8e0p 79 2 specificity specificity NN cord-265978-i0fu8e0p 79 3 of of IN cord-265978-i0fu8e0p 79 4 the the DT cord-265978-i0fu8e0p 79 5 developed developed JJ cord-265978-i0fu8e0p 79 6 assay assay NN cord-265978-i0fu8e0p 79 7 was be VBD cord-265978-i0fu8e0p 79 8 assessed assess VBN cord-265978-i0fu8e0p 79 9 against against IN cord-265978-i0fu8e0p 79 10 viral viral JJ cord-265978-i0fu8e0p 79 11 nucleic nucleic JJ cord-265978-i0fu8e0p 79 12 acid acid NN cord-265978-i0fu8e0p 79 13 extracted extract VBN cord-265978-i0fu8e0p 79 14 from from IN cord-265978-i0fu8e0p 79 15 a a DT cord-265978-i0fu8e0p 79 16 range range NN cord-265978-i0fu8e0p 79 17 of of IN cord-265978-i0fu8e0p 79 18 animal animal NN cord-265978-i0fu8e0p 79 19 viruses virus NNS cord-265978-i0fu8e0p 79 20 of of IN cord-265978-i0fu8e0p 79 21 clinical clinical JJ cord-265978-i0fu8e0p 79 22 and and CC cord-265978-i0fu8e0p 79 23 structural structural JJ cord-265978-i0fu8e0p 79 24 relevance relevance NN cord-265978-i0fu8e0p 79 25 to to IN cord-265978-i0fu8e0p 79 26 BCoV BCoV NNP cord-265978-i0fu8e0p 79 27 ( ( -LRB- cord-265978-i0fu8e0p 79 28 Table table NN cord-265978-i0fu8e0p 79 29 1 1 CD cord-265978-i0fu8e0p 79 30 ) ) -RRB- cord-265978-i0fu8e0p 79 31 . . . cord-265978-i0fu8e0p 80 1 The the DT cord-265978-i0fu8e0p 80 2 analytical analytical JJ cord-265978-i0fu8e0p 80 3 specificity specificity NN cord-265978-i0fu8e0p 80 4 was be VBD cord-265978-i0fu8e0p 80 5 further further RB cord-265978-i0fu8e0p 80 6 established establish VBN cord-265978-i0fu8e0p 80 7 by by IN cord-265978-i0fu8e0p 80 8 performing perform VBG cord-265978-i0fu8e0p 80 9 melt melt NN cord-265978-i0fu8e0p 80 10 curve curve NN cord-265978-i0fu8e0p 80 11 analysis analysis NN cord-265978-i0fu8e0p 80 12 and and CC cord-265978-i0fu8e0p 80 13 agarose agarose VBN cord-265978-i0fu8e0p 80 14 gel gel NN cord-265978-i0fu8e0p 80 15 electrophoresis electrophoresis NN cord-265978-i0fu8e0p 80 16 on on IN cord-265978-i0fu8e0p 80 17 the the DT cord-265978-i0fu8e0p 80 18 final final JJ cord-265978-i0fu8e0p 80 19 PCR PCR NNP cord-265978-i0fu8e0p 80 20 product product NN cord-265978-i0fu8e0p 80 21 . . . cord-265978-i0fu8e0p 81 1 Negative negative JJ cord-265978-i0fu8e0p 81 2 controls control NNS cord-265978-i0fu8e0p 81 3 included include VBD cord-265978-i0fu8e0p 81 4 fecal fecal JJ cord-265978-i0fu8e0p 81 5 and and CC cord-265978-i0fu8e0p 81 6 nasal nasal NN cord-265978-i0fu8e0p 81 7 samples sample NNS cord-265978-i0fu8e0p 81 8 collected collect VBN cord-265978-i0fu8e0p 81 9 from from IN cord-265978-i0fu8e0p 81 10 uninfected uninfected JJ cord-265978-i0fu8e0p 81 11 calves calf NNS cord-265978-i0fu8e0p 81 12 , , , cord-265978-i0fu8e0p 81 13 unrelated unrelated JJ cord-265978-i0fu8e0p 81 14 virus virus NN cord-265978-i0fu8e0p 81 15 strains strain NNS cord-265978-i0fu8e0p 81 16 like like IN cord-265978-i0fu8e0p 81 17 NDV NDV NNP cord-265978-i0fu8e0p 81 18 , , , cord-265978-i0fu8e0p 81 19 ARV ARV NNP cord-265978-i0fu8e0p 81 20 and and CC cord-265978-i0fu8e0p 81 21 HPIV-3 HPIV-3 NNP cord-265978-i0fu8e0p 81 22 and and CC cord-265978-i0fu8e0p 81 23 MilliQ milliq NN cord-265978-i0fu8e0p 81 24 water water NN cord-265978-i0fu8e0p 81 25 . . . cord-265978-i0fu8e0p 82 1 BCoV bcov NN cord-265978-i0fu8e0p 82 2 reference reference NN cord-265978-i0fu8e0p 82 3 strain strain NN cord-265978-i0fu8e0p 82 4 was be VBD cord-265978-i0fu8e0p 82 5 titrated titrate VBN cord-265978-i0fu8e0p 82 6 on on IN cord-265978-i0fu8e0p 82 7 MDBK MDBK NNP cord-265978-i0fu8e0p 82 8 cells cell NNS cord-265978-i0fu8e0p 82 9 using use VBG cord-265978-i0fu8e0p 82 10 the the DT cord-265978-i0fu8e0p 82 11 standard standard JJ cord-265978-i0fu8e0p 82 12 methods method NNS cord-265978-i0fu8e0p 82 13 [ [ -LRB- cord-265978-i0fu8e0p 82 14 16 16 CD cord-265978-i0fu8e0p 82 15 ] ] -RRB- cord-265978-i0fu8e0p 82 16 . . . cord-265978-i0fu8e0p 83 1 Ten ten CD cord-265978-i0fu8e0p 83 2 - - HYPH cord-265978-i0fu8e0p 83 3 fold fold JJ cord-265978-i0fu8e0p 83 4 serial serial JJ cord-265978-i0fu8e0p 83 5 dilutions dilution NNS cord-265978-i0fu8e0p 83 6 of of IN cord-265978-i0fu8e0p 83 7 the the DT cord-265978-i0fu8e0p 83 8 original original JJ cord-265978-i0fu8e0p 83 9 virus virus NN cord-265978-i0fu8e0p 83 10 stock stock NN cord-265978-i0fu8e0p 83 11 were be VBD cord-265978-i0fu8e0p 83 12 prepared prepare VBN cord-265978-i0fu8e0p 83 13 in in IN cord-265978-i0fu8e0p 83 14 10 10 CD cord-265978-i0fu8e0p 83 15 % % NN cord-265978-i0fu8e0p 83 16 BCoV BCoV NNP cord-265978-i0fu8e0p 83 17 - - HYPH cord-265978-i0fu8e0p 83 18 free free JJ cord-265978-i0fu8e0p 83 19 nasal nasal NN cord-265978-i0fu8e0p 83 20 / / SYM cord-265978-i0fu8e0p 83 21 fecal fecal JJ cord-265978-i0fu8e0p 83 22 suspension suspension NN cord-265978-i0fu8e0p 83 23 . . . cord-265978-i0fu8e0p 84 1 The the DT cord-265978-i0fu8e0p 84 2 viral viral JJ cord-265978-i0fu8e0p 84 3 RNA RNA NNP cord-265978-i0fu8e0p 84 4 was be VBD cord-265978-i0fu8e0p 84 5 extracted extract VBN cord-265978-i0fu8e0p 84 6 from from IN cord-265978-i0fu8e0p 84 7 each each DT cord-265978-i0fu8e0p 84 8 dilution dilution NN cord-265978-i0fu8e0p 84 9 and and CC cord-265978-i0fu8e0p 84 10 was be VBD cord-265978-i0fu8e0p 84 11 analyzed analyze VBN cord-265978-i0fu8e0p 84 12 by by IN cord-265978-i0fu8e0p 84 13 the the DT cord-265978-i0fu8e0p 84 14 developed developed JJ cord-265978-i0fu8e0p 84 15 two two CD cord-265978-i0fu8e0p 84 16 - - HYPH cord-265978-i0fu8e0p 84 17 step step NN cord-265978-i0fu8e0p 84 18 real real JJ cord-265978-i0fu8e0p 84 19 - - HYPH cord-265978-i0fu8e0p 84 20 time time NN cord-265978-i0fu8e0p 84 21 PCR pcr NN cord-265978-i0fu8e0p 84 22 assay assay NN cord-265978-i0fu8e0p 84 23 and and CC cord-265978-i0fu8e0p 84 24 simultaneously simultaneously RB cord-265978-i0fu8e0p 84 25 with with IN cord-265978-i0fu8e0p 84 26 conventional conventional JJ cord-265978-i0fu8e0p 84 27 PCR PCR NNP cord-265978-i0fu8e0p 84 28 to to TO cord-265978-i0fu8e0p 84 29 allow allow VB cord-265978-i0fu8e0p 84 30 better well JJR cord-265978-i0fu8e0p 84 31 comparison comparison NN cord-265978-i0fu8e0p 84 32 of of IN cord-265978-i0fu8e0p 84 33 the the DT cord-265978-i0fu8e0p 84 34 analytical analytical JJ cord-265978-i0fu8e0p 84 35 sensitivities sensitivity NNS cord-265978-i0fu8e0p 84 36 . . . cord-265978-i0fu8e0p 85 1 The the DT cord-265978-i0fu8e0p 85 2 internal internal JJ cord-265978-i0fu8e0p 85 3 BGAPDH BGAPDH NNP cord-265978-i0fu8e0p 85 4 control control NN cord-265978-i0fu8e0p 85 5 RNA RNA NNP cord-265978-i0fu8e0p 85 6 was be VBD cord-265978-i0fu8e0p 85 7 measured measure VBN cord-265978-i0fu8e0p 85 8 in in IN cord-265978-i0fu8e0p 85 9 all all DT cord-265978-i0fu8e0p 85 10 dilutions dilution NNS cord-265978-i0fu8e0p 85 11 for for IN cord-265978-i0fu8e0p 85 12 quality quality NN cord-265978-i0fu8e0p 85 13 management management NN cord-265978-i0fu8e0p 85 14 . . . cord-265978-i0fu8e0p 86 1 Additionally additionally RB cord-265978-i0fu8e0p 86 2 , , , cord-265978-i0fu8e0p 86 3 the the DT cord-265978-i0fu8e0p 86 4 sensitivity sensitivity NN cord-265978-i0fu8e0p 86 5 of of IN cord-265978-i0fu8e0p 86 6 the the DT cord-265978-i0fu8e0p 86 7 assay assay NN cord-265978-i0fu8e0p 86 8 was be VBD cord-265978-i0fu8e0p 86 9 determined determine VBN cord-265978-i0fu8e0p 86 10 by by IN cord-265978-i0fu8e0p 86 11 running run VBG cord-265978-i0fu8e0p 86 12 10-fold 10-fold JJ cord-265978-i0fu8e0p 86 13 serial serial JJ cord-265978-i0fu8e0p 86 14 dilutions dilution NNS cord-265978-i0fu8e0p 86 15 of of IN cord-265978-i0fu8e0p 86 16 the the DT cord-265978-i0fu8e0p 86 17 plasmid plasmid NN cord-265978-i0fu8e0p 86 18 standard standard NN cord-265978-i0fu8e0p 86 19 in in IN cord-265978-i0fu8e0p 86 20 duplicates duplicate NNS cord-265978-i0fu8e0p 86 21 . . . cord-265978-i0fu8e0p 87 1 The the DT cord-265978-i0fu8e0p 87 2 lower low JJR cord-265978-i0fu8e0p 87 3 limit limit NN cord-265978-i0fu8e0p 87 4 of of IN cord-265978-i0fu8e0p 87 5 detection detection NN cord-265978-i0fu8e0p 87 6 was be VBD cord-265978-i0fu8e0p 87 7 defined define VBN cord-265978-i0fu8e0p 87 8 as as IN cord-265978-i0fu8e0p 87 9 the the DT cord-265978-i0fu8e0p 87 10 lowest low JJS cord-265978-i0fu8e0p 87 11 dilution dilution NN cord-265978-i0fu8e0p 87 12 in in IN cord-265978-i0fu8e0p 87 13 the the DT cord-265978-i0fu8e0p 87 14 10-fold 10-fold JJ cord-265978-i0fu8e0p 87 15 series series NN cord-265978-i0fu8e0p 87 16 that that WDT cord-265978-i0fu8e0p 87 17 amplified amplify VBD cord-265978-i0fu8e0p 87 18 reliably reliably RB cord-265978-i0fu8e0p 87 19 . . . cord-265978-i0fu8e0p 88 1 To to TO cord-265978-i0fu8e0p 88 2 evaluate evaluate VB cord-265978-i0fu8e0p 88 3 reproducibility reproducibility NN cord-265978-i0fu8e0p 88 4 of of IN cord-265978-i0fu8e0p 88 5 the the DT cord-265978-i0fu8e0p 88 6 assay assay NN cord-265978-i0fu8e0p 88 7 , , , cord-265978-i0fu8e0p 88 8 the the DT cord-265978-i0fu8e0p 88 9 DNA dna NN cord-265978-i0fu8e0p 88 10 standards standard NNS cord-265978-i0fu8e0p 88 11 ranging range VBG cord-265978-i0fu8e0p 88 12 from from IN cord-265978-i0fu8e0p 88 13 10 10 CD cord-265978-i0fu8e0p 88 14 8 8 CD cord-265978-i0fu8e0p 88 15 to to TO cord-265978-i0fu8e0p 88 16 10 10 CD cord-265978-i0fu8e0p 88 17 3 3 CD cord-265978-i0fu8e0p 88 18 copies copy NNS cord-265978-i0fu8e0p 88 19 / / SYM cord-265978-i0fu8e0p 88 20 reaction reaction NN cord-265978-i0fu8e0p 88 21 were be VBD cord-265978-i0fu8e0p 88 22 tested test VBN cord-265978-i0fu8e0p 88 23 repeatedly repeatedly RB cord-265978-i0fu8e0p 88 24 . . . cord-265978-i0fu8e0p 89 1 Three three CD cord-265978-i0fu8e0p 89 2 separate separate JJ cord-265978-i0fu8e0p 89 3 dilution dilution NN cord-265978-i0fu8e0p 89 4 series series NN cord-265978-i0fu8e0p 89 5 were be VBD cord-265978-i0fu8e0p 89 6 assayed assay VBN cord-265978-i0fu8e0p 89 7 in in IN cord-265978-i0fu8e0p 89 8 a a DT cord-265978-i0fu8e0p 89 9 single single JJ cord-265978-i0fu8e0p 89 10 run run NN cord-265978-i0fu8e0p 89 11 for for IN cord-265978-i0fu8e0p 89 12 evaluation evaluation NN cord-265978-i0fu8e0p 89 13 of of IN cord-265978-i0fu8e0p 89 14 the the DT cord-265978-i0fu8e0p 89 15 intra intra JJ cord-265978-i0fu8e0p 89 16 - - JJ cord-265978-i0fu8e0p 89 17 assay assay JJ cord-265978-i0fu8e0p 89 18 variations variation NNS cord-265978-i0fu8e0p 89 19 . . . cord-265978-i0fu8e0p 90 1 On on IN cord-265978-i0fu8e0p 90 2 the the DT cord-265978-i0fu8e0p 90 3 other other JJ cord-265978-i0fu8e0p 90 4 hand hand NN cord-265978-i0fu8e0p 90 5 , , , cord-265978-i0fu8e0p 90 6 the the DT cord-265978-i0fu8e0p 90 7 inter inter JJ cord-265978-i0fu8e0p 90 8 - - JJ cord-265978-i0fu8e0p 90 9 assay assay JJ cord-265978-i0fu8e0p 90 10 variations variation NNS cord-265978-i0fu8e0p 90 11 were be VBD cord-265978-i0fu8e0p 90 12 measured measure VBN cord-265978-i0fu8e0p 90 13 by by IN cord-265978-i0fu8e0p 90 14 testing test VBG cord-265978-i0fu8e0p 90 15 each each DT cord-265978-i0fu8e0p 90 16 dilution dilution NN cord-265978-i0fu8e0p 90 17 in in IN cord-265978-i0fu8e0p 90 18 three three CD cord-265978-i0fu8e0p 90 19 separate separate JJ cord-265978-i0fu8e0p 90 20 runs run NNS cord-265978-i0fu8e0p 90 21 . . . cord-265978-i0fu8e0p 91 1 The the DT cord-265978-i0fu8e0p 91 2 mean mean JJ cord-265978-i0fu8e0p 91 3 , , , cord-265978-i0fu8e0p 91 4 standard standard JJ cord-265978-i0fu8e0p 91 5 deviation deviation NN cord-265978-i0fu8e0p 91 6 ( ( -LRB- cord-265978-i0fu8e0p 91 7 SD sd NN cord-265978-i0fu8e0p 91 8 ) ) -RRB- cord-265978-i0fu8e0p 91 9 and and CC cord-265978-i0fu8e0p 91 10 coefficient coefficient NN cord-265978-i0fu8e0p 91 11 of of IN cord-265978-i0fu8e0p 91 12 variation variation NN cord-265978-i0fu8e0p 91 13 ( ( -LRB- cord-265978-i0fu8e0p 91 14 CV CV NNP cord-265978-i0fu8e0p 91 15 ) ) -RRB- cord-265978-i0fu8e0p 91 16 were be VBD cord-265978-i0fu8e0p 91 17 calculated calculate VBN cord-265978-i0fu8e0p 91 18 separately separately RB cord-265978-i0fu8e0p 91 19 for for IN cord-265978-i0fu8e0p 91 20 each each DT cord-265978-i0fu8e0p 91 21 standard standard JJ cord-265978-i0fu8e0p 91 22 DNA dna NN cord-265978-i0fu8e0p 91 23 dilution dilution NN cord-265978-i0fu8e0p 91 24 based base VBN cord-265978-i0fu8e0p 91 25 on on IN cord-265978-i0fu8e0p 91 26 their -PRON- PRP$ cord-265978-i0fu8e0p 91 27 C c NN cord-265978-i0fu8e0p 91 28 T t NN cord-265978-i0fu8e0p 91 29 values value NNS cord-265978-i0fu8e0p 91 30 using use VBG cord-265978-i0fu8e0p 91 31 Microsoft Microsoft NNP cord-265978-i0fu8e0p 91 32 Excel Excel NNP cord-265978-i0fu8e0p 91 33 software software NN cord-265978-i0fu8e0p 91 34 . . . cord-265978-i0fu8e0p 92 1 For for IN cord-265978-i0fu8e0p 92 2 comparative comparative JJ cord-265978-i0fu8e0p 92 3 purposes purpose NNS cord-265978-i0fu8e0p 92 4 , , , cord-265978-i0fu8e0p 92 5 gel gel NN cord-265978-i0fu8e0p 92 6 - - HYPH cord-265978-i0fu8e0p 92 7 based base VBN cord-265978-i0fu8e0p 92 8 PCR PCR NNP cord-265978-i0fu8e0p 92 9 was be VBD cord-265978-i0fu8e0p 92 10 performed perform VBN cord-265978-i0fu8e0p 92 11 on on IN cord-265978-i0fu8e0p 92 12 the the DT cord-265978-i0fu8e0p 92 13 cDNA cdna NN cord-265978-i0fu8e0p 92 14 preparations preparation NNS cord-265978-i0fu8e0p 92 15 of of IN cord-265978-i0fu8e0p 92 16 the the DT cord-265978-i0fu8e0p 92 17 BCoV BCoV NNP cord-265978-i0fu8e0p 92 18 10-fold 10-fold CD cord-265978-i0fu8e0p 92 19 dilution dilution NN cord-265978-i0fu8e0p 92 20 series series NN cord-265978-i0fu8e0p 92 21 ( ( -LRB- cord-265978-i0fu8e0p 92 22 Section Section NNP cord-265978-i0fu8e0p 92 23 2.7 2.7 CD cord-265978-i0fu8e0p 92 24 ) ) -RRB- cord-265978-i0fu8e0p 92 25 and and CC cord-265978-i0fu8e0p 92 26 the the DT cord-265978-i0fu8e0p 92 27 clinical clinical JJ cord-265978-i0fu8e0p 92 28 samples sample NNS cord-265978-i0fu8e0p 92 29 . . . cord-265978-i0fu8e0p 93 1 The the DT cord-265978-i0fu8e0p 93 2 PCR PCR NNP cord-265978-i0fu8e0p 93 3 mixture mixture NN cord-265978-i0fu8e0p 93 4 contained contain VBD cord-265978-i0fu8e0p 93 5 12.5 12.5 CD cord-265978-i0fu8e0p 93 6 ml ml NNS cord-265978-i0fu8e0p 93 7 of of IN cord-265978-i0fu8e0p 93 8 2Â 2â CD cord-265978-i0fu8e0p 93 9 Multiplex Multiplex NNP cord-265978-i0fu8e0p 93 10 PCR PCR NNP cord-265978-i0fu8e0p 93 11 Master Master NNP cord-265978-i0fu8e0p 93 12 Mix Mix NNP cord-265978-i0fu8e0p 93 13 ( ( -LRB- cord-265978-i0fu8e0p 93 14 Qiagen Qiagen NNP cord-265978-i0fu8e0p 93 15 ) ) -RRB- cord-265978-i0fu8e0p 93 16 , , , cord-265978-i0fu8e0p 93 17 0.5 0.5 CD cord-265978-i0fu8e0p 93 18 ml ml NN cord-265978-i0fu8e0p 93 19 ( ( -LRB- cord-265978-i0fu8e0p 93 20 0.2 0.2 CD cord-265978-i0fu8e0p 93 21 mM mm CD cord-265978-i0fu8e0p 93 22 ) ) -RRB- cord-265978-i0fu8e0p 93 23 of of IN cord-265978-i0fu8e0p 93 24 each each DT cord-265978-i0fu8e0p 93 25 primer primer NN cord-265978-i0fu8e0p 93 26 ( ( -LRB- cord-265978-i0fu8e0p 93 27 BCoV BCoV NNP cord-265978-i0fu8e0p 93 28 and and CC cord-265978-i0fu8e0p 93 29 internal internal JJ cord-265978-i0fu8e0p 93 30 control control NN cord-265978-i0fu8e0p 93 31 qPCR qpcr NN cord-265978-i0fu8e0p 93 32 primer primer NN cord-265978-i0fu8e0p 93 33 sets set NNS cord-265978-i0fu8e0p 93 34 ) ) -RRB- cord-265978-i0fu8e0p 93 35 , , , cord-265978-i0fu8e0p 93 36 2 2 CD cord-265978-i0fu8e0p 93 37 ml ml NNS cord-265978-i0fu8e0p 93 38 of of IN cord-265978-i0fu8e0p 93 39 the the DT cord-265978-i0fu8e0p 93 40 cDNA cdna NN cord-265978-i0fu8e0p 93 41 , , , cord-265978-i0fu8e0p 93 42 and and CC cord-265978-i0fu8e0p 93 43 8.5 8.5 CD cord-265978-i0fu8e0p 93 44 ml ml NN cord-265978-i0fu8e0p 93 45 PCR PCR NNP cord-265978-i0fu8e0p 93 46 grade grade NN cord-265978-i0fu8e0p 93 47 water water NN cord-265978-i0fu8e0p 93 48 . . . cord-265978-i0fu8e0p 94 1 Amplification amplification NN cord-265978-i0fu8e0p 94 2 of of IN cord-265978-i0fu8e0p 94 3 target target NN cord-265978-i0fu8e0p 94 4 sequences sequence NNS cord-265978-i0fu8e0p 94 5 was be VBD cord-265978-i0fu8e0p 94 6 conducted conduct VBN cord-265978-i0fu8e0p 94 7 in in IN cord-265978-i0fu8e0p 94 8 a a DT cord-265978-i0fu8e0p 94 9 thermal thermal JJ cord-265978-i0fu8e0p 94 10 cycler cycler NN cord-265978-i0fu8e0p 94 11 ( ( -LRB- cord-265978-i0fu8e0p 94 12 Applied Applied NNP cord-265978-i0fu8e0p 94 13 Biosystem Biosystem NNP cord-265978-i0fu8e0p 94 14 ) ) -RRB- cord-265978-i0fu8e0p 94 15 using use VBG cord-265978-i0fu8e0p 94 16 the the DT cord-265978-i0fu8e0p 94 17 following follow VBG cord-265978-i0fu8e0p 94 18 cycling cycling NN cord-265978-i0fu8e0p 94 19 profile profile NN cord-265978-i0fu8e0p 94 20 : : : cord-265978-i0fu8e0p 94 21 initial initial JJ cord-265978-i0fu8e0p 94 22 activation activation NN cord-265978-i0fu8e0p 94 23 step step NN cord-265978-i0fu8e0p 94 24 at at IN cord-265978-i0fu8e0p 94 25 95 95 CD cord-265978-i0fu8e0p 94 26 C c NN cord-265978-i0fu8e0p 94 27 for for IN cord-265978-i0fu8e0p 94 28 15 15 CD cord-265978-i0fu8e0p 94 29 min min NN cord-265978-i0fu8e0p 94 30 ; ; : cord-265978-i0fu8e0p 94 31 35 35 CD cord-265978-i0fu8e0p 94 32 cycles cycle NNS cord-265978-i0fu8e0p 94 33 of of IN cord-265978-i0fu8e0p 94 34 denaturation denaturation NN cord-265978-i0fu8e0p 94 35 at at IN cord-265978-i0fu8e0p 94 36 94 94 CD cord-265978-i0fu8e0p 94 37 C c NN cord-265978-i0fu8e0p 94 38 for for IN cord-265978-i0fu8e0p 94 39 30 30 CD cord-265978-i0fu8e0p 94 40 s s NN cord-265978-i0fu8e0p 94 41 , , , cord-265978-i0fu8e0p 94 42 primer primer NN cord-265978-i0fu8e0p 94 43 annealing annealing NN cord-265978-i0fu8e0p 94 44 at at IN cord-265978-i0fu8e0p 94 45 57 57 CD cord-265978-i0fu8e0p 94 46 C c NN cord-265978-i0fu8e0p 94 47 Table table NN cord-265978-i0fu8e0p 94 48 3 3 CD cord-265978-i0fu8e0p 94 49 Reproducibility Reproducibility NNP cord-265978-i0fu8e0p 94 50 of of IN cord-265978-i0fu8e0p 94 51 the the DT cord-265978-i0fu8e0p 94 52 BCV BCV NNP cord-265978-i0fu8e0p 94 53 real real JJ cord-265978-i0fu8e0p 94 54 - - HYPH cord-265978-i0fu8e0p 94 55 time time NN cord-265978-i0fu8e0p 94 56 RT RT NNP cord-265978-i0fu8e0p 94 57 - - HYPH cord-265978-i0fu8e0p 94 58 PCR PCR NNP cord-265978-i0fu8e0p 94 59 assay assay NN cord-265978-i0fu8e0p 94 60 . . . cord-265978-i0fu8e0p 95 1 Cycle cycle NN cord-265978-i0fu8e0p 95 2 of of IN cord-265978-i0fu8e0p 95 3 threshold threshold NN cord-265978-i0fu8e0p 95 4 ( ( -LRB- cord-265978-i0fu8e0p 95 5 C C NNP cord-265978-i0fu8e0p 95 6 T T NNP cord-265978-i0fu8e0p 95 7 ) ) -RRB- cord-265978-i0fu8e0p 95 8 for for IN cord-265978-i0fu8e0p 95 9 DNA dna NN cord-265978-i0fu8e0p 95 10 standards standard NNS cord-265978-i0fu8e0p 95 11 ( ( -LRB- cord-265978-i0fu8e0p 95 12 copies copy NNS cord-265978-i0fu8e0p 95 13 / / SYM cord-265978-i0fu8e0p 95 14 reaction reaction NN cord-265978-i0fu8e0p 95 15 ) ) -RRB- cord-265978-i0fu8e0p 96 1 Intra intra JJ cord-265978-i0fu8e0p 96 2 - - JJ cord-265978-i0fu8e0p 96 3 assay assay JJ cord-265978-i0fu8e0p 96 4 variation variation NN cord-265978-i0fu8e0p 96 5 for for IN cord-265978-i0fu8e0p 96 6 90 90 CD cord-265978-i0fu8e0p 96 7 s s NN cord-265978-i0fu8e0p 96 8 and and CC cord-265978-i0fu8e0p 96 9 extension extension NN cord-265978-i0fu8e0p 96 10 at at IN cord-265978-i0fu8e0p 96 11 72 72 CD cord-265978-i0fu8e0p 96 12 C c NN cord-265978-i0fu8e0p 96 13 for for IN cord-265978-i0fu8e0p 96 14 90 90 CD cord-265978-i0fu8e0p 96 15 s s NNS cord-265978-i0fu8e0p 96 16 ; ; : cord-265978-i0fu8e0p 96 17 and and CC cord-265978-i0fu8e0p 96 18 final final JJ cord-265978-i0fu8e0p 96 19 extension extension NN cord-265978-i0fu8e0p 96 20 step step NN cord-265978-i0fu8e0p 96 21 at at IN cord-265978-i0fu8e0p 96 22 72 72 CD cord-265978-i0fu8e0p 96 23 C c NN cord-265978-i0fu8e0p 96 24 for for IN cord-265978-i0fu8e0p 96 25 10 10 CD cord-265978-i0fu8e0p 96 26 min min NN cord-265978-i0fu8e0p 96 27 . . . cord-265978-i0fu8e0p 97 1 PCR PCR NNP cord-265978-i0fu8e0p 97 2 products product NNS cord-265978-i0fu8e0p 97 3 were be VBD cord-265978-i0fu8e0p 97 4 separated separate VBN cord-265978-i0fu8e0p 97 5 in in IN cord-265978-i0fu8e0p 97 6 1.5 1.5 CD cord-265978-i0fu8e0p 97 7 % % NN cord-265978-i0fu8e0p 97 8 agarose agarose NN cord-265978-i0fu8e0p 97 9 gel gel NN cord-265978-i0fu8e0p 97 10 containing contain VBG cord-265978-i0fu8e0p 97 11 0.5 0.5 CD cord-265978-i0fu8e0p 97 12 mg mg NNP cord-265978-i0fu8e0p 97 13 / / SYM cord-265978-i0fu8e0p 97 14 ml ml NN cord-265978-i0fu8e0p 97 15 ethidium ethidium NN cord-265978-i0fu8e0p 97 16 bromide bromide NN cord-265978-i0fu8e0p 97 17 . . . cord-265978-i0fu8e0p 98 1 The the DT cord-265978-i0fu8e0p 98 2 specific specific JJ cord-265978-i0fu8e0p 98 3 bands band NNS cord-265978-i0fu8e0p 98 4 were be VBD cord-265978-i0fu8e0p 98 5 identified identify VBN cord-265978-i0fu8e0p 98 6 in in IN cord-265978-i0fu8e0p 98 7 comparison comparison NN cord-265978-i0fu8e0p 98 8 with with IN cord-265978-i0fu8e0p 98 9 100 100 CD cord-265978-i0fu8e0p 98 10 bp bp NNP cord-265978-i0fu8e0p 98 11 DNA DNA NNP cord-265978-i0fu8e0p 98 12 ladder ladder NN cord-265978-i0fu8e0p 98 13 ( ( -LRB- cord-265978-i0fu8e0p 98 14 ABgene ABgene NNP cord-265978-i0fu8e0p 98 15 , , , cord-265978-i0fu8e0p 98 16 Epsom Epsom NNP cord-265978-i0fu8e0p 98 17 , , , cord-265978-i0fu8e0p 98 18 Surrey Surrey NNP cord-265978-i0fu8e0p 98 19 , , , cord-265978-i0fu8e0p 98 20 UK UK NNP cord-265978-i0fu8e0p 98 21 ) ) -RRB- cord-265978-i0fu8e0p 98 22 and and CC cord-265978-i0fu8e0p 98 23 documented document VBD cord-265978-i0fu8e0p 98 24 using use VBG cord-265978-i0fu8e0p 98 25 an an DT cord-265978-i0fu8e0p 98 26 image image NN cord-265978-i0fu8e0p 98 27 analysis analysis NN cord-265978-i0fu8e0p 98 28 system system NN cord-265978-i0fu8e0p 98 29 ( ( -LRB- cord-265978-i0fu8e0p 98 30 IMAGO IMAGO NNP cord-265978-i0fu8e0p 98 31 Compact Compact NNP cord-265978-i0fu8e0p 98 32 Imaging Imaging NNP cord-265978-i0fu8e0p 98 33 System System NNP cord-265978-i0fu8e0p 98 34 , , , cord-265978-i0fu8e0p 98 35 B&L B&L NNP cord-265978-i0fu8e0p 98 36 , , , cord-265978-i0fu8e0p 98 37 USA USA NNP cord-265978-i0fu8e0p 98 38 ) ) -RRB- cord-265978-i0fu8e0p 98 39 . . . cord-265978-i0fu8e0p 99 1 In in IN cord-265978-i0fu8e0p 99 2 order order NN cord-265978-i0fu8e0p 99 3 to to TO cord-265978-i0fu8e0p 99 4 determine determine VB cord-265978-i0fu8e0p 99 5 the the DT cord-265978-i0fu8e0p 99 6 optimal optimal JJ cord-265978-i0fu8e0p 99 7 conditions condition NNS cord-265978-i0fu8e0p 99 8 for for IN cord-265978-i0fu8e0p 99 9 developing develop VBG cord-265978-i0fu8e0p 99 10 a a DT cord-265978-i0fu8e0p 99 11 robust robust JJ cord-265978-i0fu8e0p 99 12 SYBR SYBR NNP cord-265978-i0fu8e0p 99 13 Green Green NNP cord-265978-i0fu8e0p 99 14 I -PRON- PRP cord-265978-i0fu8e0p 99 15 based base VBD cord-265978-i0fu8e0p 99 16 real real JJ cord-265978-i0fu8e0p 99 17 - - HYPH cord-265978-i0fu8e0p 99 18 time time NN cord-265978-i0fu8e0p 99 19 qPCR qpcr NN cord-265978-i0fu8e0p 99 20 assay assay NN cord-265978-i0fu8e0p 99 21 that that WDT cord-265978-i0fu8e0p 99 22 detects detect VBZ cord-265978-i0fu8e0p 99 23 BCoV BCoV NNP cord-265978-i0fu8e0p 99 24 and and CC cord-265978-i0fu8e0p 99 25 internal internal JJ cord-265978-i0fu8e0p 99 26 control control NN cord-265978-i0fu8e0p 99 27 RNA RNA NNP cord-265978-i0fu8e0p 99 28 simultaneously simultaneously RB cord-265978-i0fu8e0p 99 29 , , , cord-265978-i0fu8e0p 99 30 different different JJ cord-265978-i0fu8e0p 99 31 variables variable NNS cord-265978-i0fu8e0p 99 32 of of IN cord-265978-i0fu8e0p 99 33 the the DT cord-265978-i0fu8e0p 99 34 reaction reaction NN cord-265978-i0fu8e0p 99 35 were be VBD cord-265978-i0fu8e0p 99 36 assessed assess VBN cord-265978-i0fu8e0p 99 37 . . . cord-265978-i0fu8e0p 100 1 Such such JJ cord-265978-i0fu8e0p 100 2 parameters parameter NNS cord-265978-i0fu8e0p 100 3 included include VBD cord-265978-i0fu8e0p 100 4 : : : cord-265978-i0fu8e0p 100 5 magnesium magnesium NN cord-265978-i0fu8e0p 100 6 chloride chloride NN cord-265978-i0fu8e0p 100 7 concentration concentration NN cord-265978-i0fu8e0p 100 8 ( ( -LRB- cord-265978-i0fu8e0p 100 9 2.5e4 2.5e4 CD cord-265978-i0fu8e0p 100 10 mM mm NN cord-265978-i0fu8e0p 100 11 ) ) -RRB- cord-265978-i0fu8e0p 100 12 ; ; : cord-265978-i0fu8e0p 100 13 concentration concentration NN cord-265978-i0fu8e0p 100 14 of of IN cord-265978-i0fu8e0p 100 15 the the DT cord-265978-i0fu8e0p 100 16 two two CD cord-265978-i0fu8e0p 100 17 sets set NNS cord-265978-i0fu8e0p 100 18 of of IN cord-265978-i0fu8e0p 100 19 primers primer NNS cord-265978-i0fu8e0p 100 20 ( ( -LRB- cord-265978-i0fu8e0p 100 21 0.2e1 0.2e1 CD cord-265978-i0fu8e0p 100 22 mM mm CD cord-265978-i0fu8e0p 100 23 ) ) -RRB- cord-265978-i0fu8e0p 100 24 ; ; : cord-265978-i0fu8e0p 100 25 template template NN cord-265978-i0fu8e0p 100 26 volume volume NN cord-265978-i0fu8e0p 100 27 ( ( -LRB- cord-265978-i0fu8e0p 100 28 1e5 1e5 CD cord-265978-i0fu8e0p 100 29 ml ml NN cord-265978-i0fu8e0p 100 30 ) ) -RRB- cord-265978-i0fu8e0p 100 31 ; ; : cord-265978-i0fu8e0p 100 32 and and CC cord-265978-i0fu8e0p 100 33 annealing anneal VBG cord-265978-i0fu8e0p 100 34 temperature temperature NN cord-265978-i0fu8e0p 100 35 ( ( -LRB- cord-265978-i0fu8e0p 100 36 55e60 55e60 CD cord-265978-i0fu8e0p 100 37 C C NNP cord-265978-i0fu8e0p 100 38 ) ) -RRB- cord-265978-i0fu8e0p 100 39 . . . cord-265978-i0fu8e0p 101 1 Criteria criterion NNS cord-265978-i0fu8e0p 101 2 for for IN cord-265978-i0fu8e0p 101 3 selection selection NN cord-265978-i0fu8e0p 101 4 of of IN cord-265978-i0fu8e0p 101 5 the the DT cord-265978-i0fu8e0p 101 6 proper proper JJ cord-265978-i0fu8e0p 101 7 measures measure NNS cord-265978-i0fu8e0p 101 8 were be VBD cord-265978-i0fu8e0p 101 9 the the DT cord-265978-i0fu8e0p 101 10 intensity intensity NN cord-265978-i0fu8e0p 101 11 of of IN cord-265978-i0fu8e0p 101 12 fluorescence fluorescence NN cord-265978-i0fu8e0p 101 13 and and CC cord-265978-i0fu8e0p 101 14 the the DT cord-265978-i0fu8e0p 101 15 number number NN cord-265978-i0fu8e0p 101 16 of of IN cord-265978-i0fu8e0p 101 17 cycles cycle NNS cord-265978-i0fu8e0p 101 18 required require VBN cord-265978-i0fu8e0p 101 19 to to TO cord-265978-i0fu8e0p 101 20 develop develop VB cord-265978-i0fu8e0p 101 21 a a DT cord-265978-i0fu8e0p 101 22 detectable detectable JJ cord-265978-i0fu8e0p 101 23 signal signal NN cord-265978-i0fu8e0p 101 24 ( ( -LRB- cord-265978-i0fu8e0p 101 25 C c NN cord-265978-i0fu8e0p 101 26 T t NN cord-265978-i0fu8e0p 101 27 values value NNS cord-265978-i0fu8e0p 101 28 ) ) -RRB- cord-265978-i0fu8e0p 101 29 . . . cord-265978-i0fu8e0p 102 1 Ideal ideal JJ cord-265978-i0fu8e0p 102 2 performance performance NN cord-265978-i0fu8e0p 102 3 of of IN cord-265978-i0fu8e0p 102 4 the the DT cord-265978-i0fu8e0p 102 5 assay assay NN cord-265978-i0fu8e0p 102 6 was be VBD cord-265978-i0fu8e0p 102 7 achieved achieve VBN cord-265978-i0fu8e0p 102 8 by by IN cord-265978-i0fu8e0p 102 9 the the DT cord-265978-i0fu8e0p 102 10 use use NN cord-265978-i0fu8e0p 102 11 of of IN cord-265978-i0fu8e0p 102 12 Quantitect Quantitect NNP cord-265978-i0fu8e0p 102 13 SYBR SYBR NNP cord-265978-i0fu8e0p 102 14 Green Green NNP cord-265978-i0fu8e0p 102 15 PCR PCR NNP cord-265978-i0fu8e0p 102 16 Master Master NNP cord-265978-i0fu8e0p 102 17 Mix Mix NNP cord-265978-i0fu8e0p 102 18 ( ( -LRB- cord-265978-i0fu8e0p 102 19 Qiagen Qiagen NNP cord-265978-i0fu8e0p 102 20 ) ) -RRB- cord-265978-i0fu8e0p 102 21 along along IN cord-265978-i0fu8e0p 102 22 with with IN cord-265978-i0fu8e0p 102 23 the the DT cord-265978-i0fu8e0p 102 24 optimized optimize VBN cord-265978-i0fu8e0p 102 25 concentrations concentration NNS cord-265978-i0fu8e0p 102 26 of of IN cord-265978-i0fu8e0p 102 27 primers primer NNS cord-265978-i0fu8e0p 102 28 and and CC cord-265978-i0fu8e0p 102 29 magnesium magnesium NN cord-265978-i0fu8e0p 102 30 chloride chloride NN cord-265978-i0fu8e0p 102 31 as as IN cord-265978-i0fu8e0p 102 32 mentioned mention VBN cord-265978-i0fu8e0p 102 33 in in IN cord-265978-i0fu8e0p 102 34 Materials material NNS cord-265978-i0fu8e0p 102 35 and and CC cord-265978-i0fu8e0p 102 36 methods method NNS cord-265978-i0fu8e0p 102 37 Section section NN cord-265978-i0fu8e0p 102 38 2.4 2.4 CD cord-265978-i0fu8e0p 102 39 . . . cord-265978-i0fu8e0p 103 1 Specific specific JJ cord-265978-i0fu8e0p 103 2 internal internal JJ cord-265978-i0fu8e0p 103 3 control control NN cord-265978-i0fu8e0p 103 4 primers primer NNS cord-265978-i0fu8e0p 103 5 that that WDT cord-265978-i0fu8e0p 103 6 target target VBP cord-265978-i0fu8e0p 103 7 unique unique JJ cord-265978-i0fu8e0p 103 8 sequences sequence NNS cord-265978-i0fu8e0p 103 9 of of IN cord-265978-i0fu8e0p 103 10 the the DT cord-265978-i0fu8e0p 103 11 bovine bovine JJ cord-265978-i0fu8e0p 103 12 GAPDH GAPDH NNP cord-265978-i0fu8e0p 103 13 mRNA mrna NN cord-265978-i0fu8e0p 103 14 were be VBD cord-265978-i0fu8e0p 103 15 designed design VBN cord-265978-i0fu8e0p 103 16 to to TO cord-265978-i0fu8e0p 103 17 validate validate VB cord-265978-i0fu8e0p 103 18 all all PDT cord-265978-i0fu8e0p 103 19 the the DT cord-265978-i0fu8e0p 103 20 reaction reaction NN cord-265978-i0fu8e0p 103 21 steps step NNS cord-265978-i0fu8e0p 103 22 from from IN cord-265978-i0fu8e0p 103 23 RNA RNA NNP cord-265978-i0fu8e0p 103 24 extraction extraction NN cord-265978-i0fu8e0p 103 25 to to TO cord-265978-i0fu8e0p 103 26 qPCR qpcr VB cord-265978-i0fu8e0p 103 27 amplification amplification NN cord-265978-i0fu8e0p 103 28 / / SYM cord-265978-i0fu8e0p 103 29 detection detection NN cord-265978-i0fu8e0p 103 30 ( ( -LRB- cord-265978-i0fu8e0p 103 31 Table Table NNP cord-265978-i0fu8e0p 103 32 2 2 CD cord-265978-i0fu8e0p 103 33 ) ) -RRB- cord-265978-i0fu8e0p 103 34 . . . cord-265978-i0fu8e0p 104 1 These these DT cord-265978-i0fu8e0p 104 2 primers primer NNS cord-265978-i0fu8e0p 104 3 also also RB cord-265978-i0fu8e0p 104 4 confirm confirm VBP cord-265978-i0fu8e0p 104 5 that that IN cord-265978-i0fu8e0p 104 6 the the DT cord-265978-i0fu8e0p 104 7 reaction reaction NN cord-265978-i0fu8e0p 104 8 was be VBD cord-265978-i0fu8e0p 104 9 performed perform VBN cord-265978-i0fu8e0p 104 10 correctly correctly RB cord-265978-i0fu8e0p 104 11 and and CC cord-265978-i0fu8e0p 104 12 that that IN cord-265978-i0fu8e0p 104 13 no no DT cord-265978-i0fu8e0p 104 14 excess excess NN cord-265978-i0fu8e0p 104 15 of of IN cord-265978-i0fu8e0p 104 16 inhibitors inhibitor NNS cord-265978-i0fu8e0p 104 17 was be VBD cord-265978-i0fu8e0p 104 18 present present JJ cord-265978-i0fu8e0p 104 19 in in IN cord-265978-i0fu8e0p 104 20 the the DT cord-265978-i0fu8e0p 104 21 extracted extract VBN cord-265978-i0fu8e0p 104 22 sample sample NN cord-265978-i0fu8e0p 104 23 thus thus RB cord-265978-i0fu8e0p 104 24 excluding exclude VBG cord-265978-i0fu8e0p 104 25 false false JJ cord-265978-i0fu8e0p 104 26 - - HYPH cord-265978-i0fu8e0p 104 27 negatives negative NNS cord-265978-i0fu8e0p 104 28 . . . cord-265978-i0fu8e0p 105 1 Detection detection NN cord-265978-i0fu8e0p 105 2 of of IN cord-265978-i0fu8e0p 105 3 internal internal JJ cord-265978-i0fu8e0p 105 4 control control NN cord-265978-i0fu8e0p 105 5 RNA RNA NNP cord-265978-i0fu8e0p 105 6 was be VBD cord-265978-i0fu8e0p 105 7 performed perform VBN cord-265978-i0fu8e0p 105 8 in in IN cord-265978-i0fu8e0p 105 9 all all DT cord-265978-i0fu8e0p 105 10 experiments experiment NNS cord-265978-i0fu8e0p 105 11 , , , cord-265978-i0fu8e0p 105 12 mostly mostly RB cord-265978-i0fu8e0p 105 13 by by IN cord-265978-i0fu8e0p 105 14 the the DT cord-265978-i0fu8e0p 105 15 use use NN cord-265978-i0fu8e0p 105 16 of of IN cord-265978-i0fu8e0p 105 17 nasal nasal NN cord-265978-i0fu8e0p 105 18 / / SYM cord-265978-i0fu8e0p 105 19 fecal fecal JJ cord-265978-i0fu8e0p 105 20 suspension suspension NN cord-265978-i0fu8e0p 105 21 prepared prepare VBN cord-265978-i0fu8e0p 105 22 from from IN cord-265978-i0fu8e0p 105 23 non non JJ cord-265978-i0fu8e0p 105 24 - - JJ cord-265978-i0fu8e0p 105 25 infected infected JJ cord-265978-i0fu8e0p 105 26 calves calf NNS cord-265978-i0fu8e0p 105 27 as as IN cord-265978-i0fu8e0p 105 28 a a DT cord-265978-i0fu8e0p 105 29 matrix matrix NN cord-265978-i0fu8e0p 105 30 . . . cord-265978-i0fu8e0p 106 1 Identification identification NN cord-265978-i0fu8e0p 106 2 of of IN cord-265978-i0fu8e0p 106 3 the the DT cord-265978-i0fu8e0p 106 4 internal internal JJ cord-265978-i0fu8e0p 106 5 control control NN cord-265978-i0fu8e0p 106 6 signal signal NN cord-265978-i0fu8e0p 106 7 was be VBD cord-265978-i0fu8e0p 106 8 achieved achieve VBN cord-265978-i0fu8e0p 106 9 by by IN cord-265978-i0fu8e0p 106 10 melting melt VBG cord-265978-i0fu8e0p 106 11 curve curve NN cord-265978-i0fu8e0p 106 12 analysis analysis NN cord-265978-i0fu8e0p 106 13 , , , cord-265978-i0fu8e0p 106 14 where where WRB cord-265978-i0fu8e0p 106 15 a a DT cord-265978-i0fu8e0p 106 16 distinct distinct JJ cord-265978-i0fu8e0p 106 17 melting melting NN cord-265978-i0fu8e0p 106 18 temperature temperature NN cord-265978-i0fu8e0p 106 19 ( ( -LRB- cord-265978-i0fu8e0p 106 20 Tm Tm NNP cord-265978-i0fu8e0p 106 21 ) ) -RRB- cord-265978-i0fu8e0p 106 22 of of IN cord-265978-i0fu8e0p 106 23 82.54 82.54 CD cord-265978-i0fu8e0p 106 24 AE AE NNP cord-265978-i0fu8e0p 106 25 0.32 0.32 CD cord-265978-i0fu8e0p 106 26 was be VBD cord-265978-i0fu8e0p 106 27 obtained obtain VBN cord-265978-i0fu8e0p 106 28 . . . cord-265978-i0fu8e0p 107 1 The the DT cord-265978-i0fu8e0p 107 2 entire entire JJ cord-265978-i0fu8e0p 107 3 N n CD cord-265978-i0fu8e0p 107 4 gene gene NN cord-265978-i0fu8e0p 107 5 of of IN cord-265978-i0fu8e0p 107 6 BCoV BCoV NNP cord-265978-i0fu8e0p 107 7 was be VBD cord-265978-i0fu8e0p 107 8 cloned clone VBN cord-265978-i0fu8e0p 107 9 in in IN cord-265978-i0fu8e0p 107 10 pCR pCR NNP cord-265978-i0fu8e0p 107 11 Ò Ò NNP cord-265978-i0fu8e0p 107 12 4-TOPO 4-topo CD cord-265978-i0fu8e0p 107 13 plasmid plasmid NN cord-265978-i0fu8e0p 107 14 to to TO cord-265978-i0fu8e0p 107 15 provide provide VB cord-265978-i0fu8e0p 107 16 a a DT cord-265978-i0fu8e0p 107 17 constant constant JJ cord-265978-i0fu8e0p 107 18 source source NN cord-265978-i0fu8e0p 107 19 of of IN cord-265978-i0fu8e0p 107 20 standard standard JJ cord-265978-i0fu8e0p 107 21 DNA dna NN cord-265978-i0fu8e0p 107 22 . . . cord-265978-i0fu8e0p 108 1 The the DT cord-265978-i0fu8e0p 108 2 plasmid plasmid NN cord-265978-i0fu8e0p 108 3 DNA dna NN cord-265978-i0fu8e0p 108 4 was be VBD cord-265978-i0fu8e0p 108 5 accurately accurately RB cord-265978-i0fu8e0p 108 6 quantified quantify VBN cord-265978-i0fu8e0p 108 7 by by IN cord-265978-i0fu8e0p 108 8 spectrophotometry spectrophotometry NN cord-265978-i0fu8e0p 108 9 and and CC cord-265978-i0fu8e0p 108 10 a a DT cord-265978-i0fu8e0p 108 11 series series NN cord-265978-i0fu8e0p 108 12 of of IN cord-265978-i0fu8e0p 108 13 10-fold 10-fold JJ cord-265978-i0fu8e0p 108 14 dilutions dilution NNS cord-265978-i0fu8e0p 108 15 starting start VBG cord-265978-i0fu8e0p 108 16 from from IN cord-265978-i0fu8e0p 108 17 a a DT cord-265978-i0fu8e0p 108 18 DNA dna NN cord-265978-i0fu8e0p 108 19 concentration concentration NN cord-265978-i0fu8e0p 108 20 of of IN cord-265978-i0fu8e0p 108 21 25 25 CD cord-265978-i0fu8e0p 108 22 mg mg NNP cord-265978-i0fu8e0p 108 23 / / SYM cord-265978-i0fu8e0p 108 24 ml ml NN cord-265978-i0fu8e0p 108 25 ( ( -LRB- cord-265978-i0fu8e0p 108 26 equivalent equivalent JJ cord-265978-i0fu8e0p 108 27 to to IN cord-265978-i0fu8e0p 108 28 10 10 CD cord-265978-i0fu8e0p 108 29 8 8 CD cord-265978-i0fu8e0p 108 30 copies copy NNS cord-265978-i0fu8e0p 108 31 per per IN cord-265978-i0fu8e0p 108 32 reaction reaction NN cord-265978-i0fu8e0p 108 33 ) ) -RRB- cord-265978-i0fu8e0p 108 34 till till IN cord-265978-i0fu8e0p 108 35 a a DT cord-265978-i0fu8e0p 108 36 DNA dna NN cord-265978-i0fu8e0p 108 37 concentration concentration NN cord-265978-i0fu8e0p 108 38 of of IN cord-265978-i0fu8e0p 108 39 25 25 CD cord-265978-i0fu8e0p 108 40 fg fg NNP cord-265978-i0fu8e0p 108 41 / / SYM cord-265978-i0fu8e0p 108 42 ml ml NN cord-265978-i0fu8e0p 108 43 ( ( -LRB- cord-265978-i0fu8e0p 108 44 equivalent equivalent JJ cord-265978-i0fu8e0p 108 45 to to IN cord-265978-i0fu8e0p 108 46 10 10 CD cord-265978-i0fu8e0p 108 47 0 0 CD cord-265978-i0fu8e0p 108 48 copies copy NNS cord-265978-i0fu8e0p 108 49 per per IN cord-265978-i0fu8e0p 108 50 reaction reaction NN cord-265978-i0fu8e0p 108 51 ) ) -RRB- cord-265978-i0fu8e0p 108 52 were be VBD cord-265978-i0fu8e0p 108 53 prepared prepare VBN cord-265978-i0fu8e0p 108 54 . . . cord-265978-i0fu8e0p 109 1 The the DT cord-265978-i0fu8e0p 109 2 correlation correlation NN cord-265978-i0fu8e0p 109 3 between between IN cord-265978-i0fu8e0p 109 4 the the DT cord-265978-i0fu8e0p 109 5 plasmid plasmid NN cord-265978-i0fu8e0p 109 6 dilution dilution NN cord-265978-i0fu8e0p 109 7 and and CC cord-265978-i0fu8e0p 109 8 the the DT cord-265978-i0fu8e0p 109 9 threshold threshold NN cord-265978-i0fu8e0p 109 10 cycle cycle NN cord-265978-i0fu8e0p 109 11 ( ( -LRB- cord-265978-i0fu8e0p 109 12 C C NNP cord-265978-i0fu8e0p 109 13 T T NNP cord-265978-i0fu8e0p 109 14 ) ) -RRB- cord-265978-i0fu8e0p 109 15 values value NNS cord-265978-i0fu8e0p 109 16 in in IN cord-265978-i0fu8e0p 109 17 qPCR qPCR NNP cord-265978-i0fu8e0p 109 18 was be VBD cord-265978-i0fu8e0p 109 19 analyzed analyze VBN cord-265978-i0fu8e0p 109 20 by by IN cord-265978-i0fu8e0p 109 21 plotting plot VBG cord-265978-i0fu8e0p 109 22 a a DT cord-265978-i0fu8e0p 109 23 standard standard JJ cord-265978-i0fu8e0p 109 24 curve curve NN cord-265978-i0fu8e0p 109 25 ( ( -LRB- cord-265978-i0fu8e0p 109 26 Fig Fig NNP cord-265978-i0fu8e0p 109 27 . . . cord-265978-i0fu8e0p 109 28 1C 1C NNP cord-265978-i0fu8e0p 109 29 ) ) -RRB- cord-265978-i0fu8e0p 109 30 . . . cord-265978-i0fu8e0p 110 1 A a DT cord-265978-i0fu8e0p 110 2 linear linear JJ cord-265978-i0fu8e0p 110 3 regression regression NN cord-265978-i0fu8e0p 110 4 relationship relationship NN cord-265978-i0fu8e0p 110 5 was be VBD cord-265978-i0fu8e0p 110 6 observed observe VBN cord-265978-i0fu8e0p 110 7 with with IN cord-265978-i0fu8e0p 110 8 a a DT cord-265978-i0fu8e0p 110 9 coefficient coefficient NN cord-265978-i0fu8e0p 110 10 of of IN cord-265978-i0fu8e0p 110 11 determination determination NN cord-265978-i0fu8e0p 110 12 ( ( -LRB- cord-265978-i0fu8e0p 110 13 R R NNP cord-265978-i0fu8e0p 110 14 2 2 CD cord-265978-i0fu8e0p 110 15 ) ) -RRB- cord-265978-i0fu8e0p 110 16 of of IN cord-265978-i0fu8e0p 110 17 0.994 0.994 CD cord-265978-i0fu8e0p 110 18 and and CC cord-265978-i0fu8e0p 110 19 a a DT cord-265978-i0fu8e0p 110 20 slope slope NN cord-265978-i0fu8e0p 110 21 of of IN cord-265978-i0fu8e0p 110 22 À3.455 à3.455 DT cord-265978-i0fu8e0p 110 23 . . . cord-265978-i0fu8e0p 111 1 These these DT cord-265978-i0fu8e0p 111 2 values value NNS cord-265978-i0fu8e0p 111 3 suggest suggest VBP cord-265978-i0fu8e0p 111 4 an an DT cord-265978-i0fu8e0p 111 5 optimum optimum JJ cord-265978-i0fu8e0p 111 6 PCR pcr NN cord-265978-i0fu8e0p 111 7 efficiency efficiency NN cord-265978-i0fu8e0p 111 8 and and CC cord-265978-i0fu8e0p 111 9 a a DT cord-265978-i0fu8e0p 111 10 good good JJ cord-265978-i0fu8e0p 111 11 correlation correlation NN cord-265978-i0fu8e0p 111 12 between between IN cord-265978-i0fu8e0p 111 13 C C NNP cord-265978-i0fu8e0p 111 14 T T NNP cord-265978-i0fu8e0p 111 15 values value NNS cord-265978-i0fu8e0p 111 16 and and CC cord-265978-i0fu8e0p 111 17 template template NN cord-265978-i0fu8e0p 111 18 concentrations concentration NNS cord-265978-i0fu8e0p 111 19 . . . cord-265978-i0fu8e0p 112 1 SYBR SYBR NNP cord-265978-i0fu8e0p 112 2 Green Green NNP cord-265978-i0fu8e0p 112 3 I -PRON- PRP cord-265978-i0fu8e0p 112 4 based base VBD cord-265978-i0fu8e0p 113 1 real real JJ cord-265978-i0fu8e0p 113 2 - - HYPH cord-265978-i0fu8e0p 113 3 time time NN cord-265978-i0fu8e0p 113 4 PCR PCR NNP cord-265978-i0fu8e0p 113 5 is be VBZ cord-265978-i0fu8e0p 113 6 a a DT cord-265978-i0fu8e0p 113 7 sequence sequence NN cord-265978-i0fu8e0p 113 8 independent independent JJ cord-265978-i0fu8e0p 113 9 assay assay NN cord-265978-i0fu8e0p 113 10 that that WDT cord-265978-i0fu8e0p 113 11 requires require VBZ cord-265978-i0fu8e0p 113 12 conduction conduction NN cord-265978-i0fu8e0p 113 13 of of IN cord-265978-i0fu8e0p 113 14 a a DT cord-265978-i0fu8e0p 113 15 melt melt NN cord-265978-i0fu8e0p 113 16 curve curve NN cord-265978-i0fu8e0p 113 17 analysis analysis NN cord-265978-i0fu8e0p 113 18 on on IN cord-265978-i0fu8e0p 113 19 the the DT cord-265978-i0fu8e0p 113 20 PCR PCR NNP cord-265978-i0fu8e0p 113 21 products product NNS cord-265978-i0fu8e0p 113 22 . . . cord-265978-i0fu8e0p 114 1 Specific specific JJ cord-265978-i0fu8e0p 114 2 amplification amplification NN cord-265978-i0fu8e0p 114 3 of of IN cord-265978-i0fu8e0p 114 4 the the DT cord-265978-i0fu8e0p 114 5 BCoV BCoV NNP cord-265978-i0fu8e0p 114 6 target target NN cord-265978-i0fu8e0p 114 7 sequence sequence NN cord-265978-i0fu8e0p 114 8 was be VBD cord-265978-i0fu8e0p 114 9 identified identify VBN cord-265978-i0fu8e0p 114 10 by by IN cord-265978-i0fu8e0p 114 11 the the DT cord-265978-i0fu8e0p 114 12 generation generation NN cord-265978-i0fu8e0p 114 13 of of IN cord-265978-i0fu8e0p 114 14 a a DT cord-265978-i0fu8e0p 114 15 melt melt NN cord-265978-i0fu8e0p 114 16 peak peak NN cord-265978-i0fu8e0p 114 17 at at IN cord-265978-i0fu8e0p 114 18 78.35 78.35 CD cord-265978-i0fu8e0p 114 19 C c NN cord-265978-i0fu8e0p 114 20 AE AE NNP cord-265978-i0fu8e0p 114 21 0.26 0.26 CD cord-265978-i0fu8e0p 114 22 . . . cord-265978-i0fu8e0p 115 1 Specificity specificity NN cord-265978-i0fu8e0p 115 2 of of IN cord-265978-i0fu8e0p 115 3 the the DT cord-265978-i0fu8e0p 115 4 reaction reaction NN cord-265978-i0fu8e0p 115 5 was be VBD cord-265978-i0fu8e0p 115 6 further further RB cord-265978-i0fu8e0p 115 7 evaluated evaluate VBN cord-265978-i0fu8e0p 115 8 for for IN cord-265978-i0fu8e0p 115 9 cross cross NN cord-265978-i0fu8e0p 115 10 reactivity reactivity NN cord-265978-i0fu8e0p 115 11 against against IN cord-265978-i0fu8e0p 115 12 different different JJ cord-265978-i0fu8e0p 115 13 viruses virus NNS cord-265978-i0fu8e0p 115 14 that that WDT cord-265978-i0fu8e0p 115 15 show show VBP cord-265978-i0fu8e0p 115 16 symptomatic symptomatic JJ cord-265978-i0fu8e0p 115 17 or or CC cord-265978-i0fu8e0p 115 18 genetic genetic JJ cord-265978-i0fu8e0p 115 19 relationship relationship NN cord-265978-i0fu8e0p 115 20 with with IN cord-265978-i0fu8e0p 115 21 BCoV BCoV NNP cord-265978-i0fu8e0p 115 22 ( ( -LRB- cord-265978-i0fu8e0p 115 23 Table Table NNP cord-265978-i0fu8e0p 115 24 1 1 CD cord-265978-i0fu8e0p 115 25 ) ) -RRB- cord-265978-i0fu8e0p 115 26 . . . cord-265978-i0fu8e0p 116 1 None none NN cord-265978-i0fu8e0p 116 2 of of IN cord-265978-i0fu8e0p 116 3 these these DT cord-265978-i0fu8e0p 116 4 viruses virus NNS cord-265978-i0fu8e0p 116 5 or or CC cord-265978-i0fu8e0p 116 6 the the DT cord-265978-i0fu8e0p 116 7 negative negative JJ cord-265978-i0fu8e0p 116 8 controls control NNS cord-265978-i0fu8e0p 116 9 showed show VBD cord-265978-i0fu8e0p 116 10 specific specific JJ cord-265978-i0fu8e0p 116 11 positive positive JJ cord-265978-i0fu8e0p 116 12 signals signal NNS cord-265978-i0fu8e0p 116 13 rather rather RB cord-265978-i0fu8e0p 116 14 than than IN cord-265978-i0fu8e0p 116 15 the the DT cord-265978-i0fu8e0p 116 16 internal internal JJ cord-265978-i0fu8e0p 116 17 control control NN cord-265978-i0fu8e0p 116 18 signal signal NN cord-265978-i0fu8e0p 116 19 consistent consistent JJ cord-265978-i0fu8e0p 116 20 with with IN cord-265978-i0fu8e0p 116 21 true true JJ cord-265978-i0fu8e0p 116 22 - - HYPH cord-265978-i0fu8e0p 116 23 negative negative JJ cord-265978-i0fu8e0p 116 24 results result NNS cord-265978-i0fu8e0p 116 25 . . . cord-265978-i0fu8e0p 117 1 The the DT cord-265978-i0fu8e0p 117 2 sensitivity sensitivity NN cord-265978-i0fu8e0p 117 3 of of IN cord-265978-i0fu8e0p 117 4 the the DT cord-265978-i0fu8e0p 117 5 assay assay NN cord-265978-i0fu8e0p 117 6 was be VBD cord-265978-i0fu8e0p 117 7 evaluated evaluate VBN cord-265978-i0fu8e0p 117 8 by by IN cord-265978-i0fu8e0p 117 9 testing test VBG cord-265978-i0fu8e0p 117 10 10-fold 10-fold JJ cord-265978-i0fu8e0p 117 11 serial serial JJ cord-265978-i0fu8e0p 117 12 dilutions dilution NNS cord-265978-i0fu8e0p 117 13 of of IN cord-265978-i0fu8e0p 117 14 DNA dna NN cord-265978-i0fu8e0p 117 15 standards standard NNS cord-265978-i0fu8e0p 117 16 ( ( -LRB- cord-265978-i0fu8e0p 117 17 10 10 CD cord-265978-i0fu8e0p 117 18 8 8 CD cord-265978-i0fu8e0p 117 19 to to TO cord-265978-i0fu8e0p 117 20 10 10 CD cord-265978-i0fu8e0p 117 21 0 0 CD cord-265978-i0fu8e0p 117 22 copies copy NNS cord-265978-i0fu8e0p 117 23 ) ) -RRB- cord-265978-i0fu8e0p 117 24 . . . cord-265978-i0fu8e0p 118 1 The the DT cord-265978-i0fu8e0p 118 2 results result NNS cord-265978-i0fu8e0p 118 3 showed show VBD cord-265978-i0fu8e0p 118 4 that that IN cord-265978-i0fu8e0p 118 5 the the DT cord-265978-i0fu8e0p 118 6 assay assay NN cord-265978-i0fu8e0p 118 7 could could MD cord-265978-i0fu8e0p 118 8 detect detect VB cord-265978-i0fu8e0p 118 9 down down RP cord-265978-i0fu8e0p 118 10 to to TO cord-265978-i0fu8e0p 118 11 10 10 CD cord-265978-i0fu8e0p 118 12 3 3 CD cord-265978-i0fu8e0p 118 13 copies copy NNS cord-265978-i0fu8e0p 118 14 of of IN cord-265978-i0fu8e0p 118 15 DNA dna NN cord-265978-i0fu8e0p 118 16 standard standard NN cord-265978-i0fu8e0p 118 17 per per IN cord-265978-i0fu8e0p 118 18 reaction reaction NN cord-265978-i0fu8e0p 118 19 . . . cord-265978-i0fu8e0p 119 1 When when WRB cord-265978-i0fu8e0p 119 2 testing test VBG cord-265978-i0fu8e0p 119 3 a a DT cord-265978-i0fu8e0p 119 4 dilution dilution NN cord-265978-i0fu8e0p 119 5 series series NN cord-265978-i0fu8e0p 119 6 of of IN cord-265978-i0fu8e0p 119 7 BCoV BCoV NNP cord-265978-i0fu8e0p 119 8 reference reference NN cord-265978-i0fu8e0p 119 9 strain strain NN cord-265978-i0fu8e0p 119 10 in in IN cord-265978-i0fu8e0p 119 11 nasal/ nasal/ CD cord-265978-i0fu8e0p 119 12 fecal fecal JJ cord-265978-i0fu8e0p 119 13 suspension suspension NN cord-265978-i0fu8e0p 119 14 ( ( -LRB- cord-265978-i0fu8e0p 119 15 10 10 CD cord-265978-i0fu8e0p 119 16 5 5 CD cord-265978-i0fu8e0p 119 17 TCID TCID NNP cord-265978-i0fu8e0p 119 18 50 50 CD cord-265978-i0fu8e0p 120 1 /ml /ml NFP cord-265978-i0fu8e0p 120 2 , , , cord-265978-i0fu8e0p 120 3 dilutions dilution NNS cord-265978-i0fu8e0p 120 4 10 10 CD cord-265978-i0fu8e0p 120 5 À1 à1 CD cord-265978-i0fu8e0p 120 6 e10 e10 NN cord-265978-i0fu8e0p 120 7 À6 À6 NNP cord-265978-i0fu8e0p 120 8 ) ) -RRB- cord-265978-i0fu8e0p 120 9 , , , cord-265978-i0fu8e0p 120 10 the the DT cord-265978-i0fu8e0p 120 11 obtained obtain VBN cord-265978-i0fu8e0p 120 12 detection detection NN cord-265978-i0fu8e0p 120 13 limit limit NN cord-265978-i0fu8e0p 120 14 was be VBD cord-265978-i0fu8e0p 120 15 1 1 CD cord-265978-i0fu8e0p 120 16 TCID TCID NNP cord-265978-i0fu8e0p 120 17 50 50 CD cord-265978-i0fu8e0p 120 18 /ml /ml . cord-265978-i0fu8e0p 120 19 ; ; : cord-265978-i0fu8e0p 120 20 equivalent equivalent JJ cord-265978-i0fu8e0p 120 21 to to IN cord-265978-i0fu8e0p 120 22 1.17 1.17 CD cord-265978-i0fu8e0p 120 23 Â â CD cord-265978-i0fu8e0p 120 24 10 10 CD cord-265978-i0fu8e0p 120 25 À3 à3 CD cord-265978-i0fu8e0p 120 26 TCID TCID NNP cord-265978-i0fu8e0p 120 27 50 50 CD cord-265978-i0fu8e0p 120 28 / / SYM cord-265978-i0fu8e0p 120 29 reaction reaction NN cord-265978-i0fu8e0p 120 30 ( ( -LRB- cord-265978-i0fu8e0p 120 31 Fig Fig NNP cord-265978-i0fu8e0p 120 32 . . . cord-265978-i0fu8e0p 120 33 1A 1a NN cord-265978-i0fu8e0p 120 34 , , , cord-265978-i0fu8e0p 120 35 B b NN cord-265978-i0fu8e0p 120 36 ) ) -RRB- cord-265978-i0fu8e0p 120 37 . . . cord-265978-i0fu8e0p 121 1 In in IN cord-265978-i0fu8e0p 121 2 comparison comparison NN cord-265978-i0fu8e0p 121 3 , , , cord-265978-i0fu8e0p 121 4 the the DT cord-265978-i0fu8e0p 121 5 conventional conventional JJ cord-265978-i0fu8e0p 121 6 RT RT NNP cord-265978-i0fu8e0p 121 7 - - HYPH cord-265978-i0fu8e0p 121 8 PCR PCR NNP cord-265978-i0fu8e0p 121 9 was be VBD cord-265978-i0fu8e0p 121 10 10 10 CD cord-265978-i0fu8e0p 121 11 times time NNS cord-265978-i0fu8e0p 121 12 less less RBR cord-265978-i0fu8e0p 121 13 sensitive sensitive JJ cord-265978-i0fu8e0p 121 14 than than IN cord-265978-i0fu8e0p 121 15 the the DT cord-265978-i0fu8e0p 121 16 real real JJ cord-265978-i0fu8e0p 121 17 - - HYPH cord-265978-i0fu8e0p 121 18 time time NN cord-265978-i0fu8e0p 121 19 assay assay NN cord-265978-i0fu8e0p 121 20 for for IN cord-265978-i0fu8e0p 121 21 both both DT cord-265978-i0fu8e0p 121 22 template template NN cord-265978-i0fu8e0p 121 23 systems system NNS cord-265978-i0fu8e0p 121 24 . . . cord-265978-i0fu8e0p 122 1 Accuracy accuracy NN cord-265978-i0fu8e0p 122 2 and and CC cord-265978-i0fu8e0p 122 3 reproducibility reproducibility NN cord-265978-i0fu8e0p 122 4 of of IN cord-265978-i0fu8e0p 122 5 the the DT cord-265978-i0fu8e0p 122 6 assay assay NN cord-265978-i0fu8e0p 122 7 were be VBD cord-265978-i0fu8e0p 122 8 established establish VBN cord-265978-i0fu8e0p 122 9 basing base VBG cord-265978-i0fu8e0p 122 10 on on IN cord-265978-i0fu8e0p 122 11 the the DT cord-265978-i0fu8e0p 122 12 C c NN cord-265978-i0fu8e0p 122 13 T T NNP cord-265978-i0fu8e0p 122 14 values value NNS cord-265978-i0fu8e0p 122 15 obtained obtain VBN cord-265978-i0fu8e0p 122 16 from from IN cord-265978-i0fu8e0p 122 17 testing test VBG cord-265978-i0fu8e0p 122 18 DNA dna NN cord-265978-i0fu8e0p 122 19 standards standard NNS cord-265978-i0fu8e0p 122 20 in in IN cord-265978-i0fu8e0p 122 21 triplicates triplicate NNS cord-265978-i0fu8e0p 122 22 ; ; : cord-265978-i0fu8e0p 122 23 within within IN cord-265978-i0fu8e0p 122 24 each each DT cord-265978-i0fu8e0p 122 25 run run NN cord-265978-i0fu8e0p 122 26 ( ( -LRB- cord-265978-i0fu8e0p 122 27 intra intra JJ cord-265978-i0fu8e0p 122 28 - - JJ cord-265978-i0fu8e0p 122 29 assay assay JJ cord-265978-i0fu8e0p 122 30 ) ) -RRB- cord-265978-i0fu8e0p 122 31 and and CC cord-265978-i0fu8e0p 122 32 in in IN cord-265978-i0fu8e0p 122 33 three three CD cord-265978-i0fu8e0p 122 34 consecutive consecutive JJ cord-265978-i0fu8e0p 122 35 runs run NNS cord-265978-i0fu8e0p 122 36 ( ( -LRB- cord-265978-i0fu8e0p 122 37 inter inter JJ cord-265978-i0fu8e0p 122 38 - - JJ cord-265978-i0fu8e0p 122 39 assay assay NN cord-265978-i0fu8e0p 122 40 ) ) -RRB- cord-265978-i0fu8e0p 122 41 ( ( -LRB- cord-265978-i0fu8e0p 122 42 Table table NN cord-265978-i0fu8e0p 122 43 3 3 CD cord-265978-i0fu8e0p 122 44 ) ) -RRB- cord-265978-i0fu8e0p 122 45 . . . cord-265978-i0fu8e0p 123 1 The the DT cord-265978-i0fu8e0p 123 2 calculated calculated JJ cord-265978-i0fu8e0p 123 3 S.D S.D NNP cord-265978-i0fu8e0p 123 4 and and CC cord-265978-i0fu8e0p 123 5 C.V C.V NNP cord-265978-i0fu8e0p 123 6 values value NNS cord-265978-i0fu8e0p 123 7 for for IN cord-265978-i0fu8e0p 123 8 intra intra JJ cord-265978-i0fu8e0p 123 9 - - JJ cord-265978-i0fu8e0p 123 10 assay assay JJ cord-265978-i0fu8e0p 123 11 variability variability NN cord-265978-i0fu8e0p 123 12 were be VBD cord-265978-i0fu8e0p 123 13 low low JJ cord-265978-i0fu8e0p 123 14 , , , cord-265978-i0fu8e0p 123 15 ranging range VBG cord-265978-i0fu8e0p 123 16 from from IN cord-265978-i0fu8e0p 123 17 0.03 0.03 CD cord-265978-i0fu8e0p 123 18 to to TO cord-265978-i0fu8e0p 123 19 0.53 0.53 CD cord-265978-i0fu8e0p 123 20 and and CC cord-265978-i0fu8e0p 123 21 from from IN cord-265978-i0fu8e0p 123 22 0.13 0.13 CD cord-265978-i0fu8e0p 123 23 % % NN cord-265978-i0fu8e0p 123 24 to to TO cord-265978-i0fu8e0p 123 25 1.25 1.25 CD cord-265978-i0fu8e0p 123 26 % % NN cord-265978-i0fu8e0p 123 27 , , , cord-265978-i0fu8e0p 123 28 respectively respectively RB cord-265978-i0fu8e0p 123 29 . . . cord-265978-i0fu8e0p 124 1 The the DT cord-265978-i0fu8e0p 124 2 inter inter JJ cord-265978-i0fu8e0p 124 3 - - JJ cord-265978-i0fu8e0p 124 4 assay assay JJ cord-265978-i0fu8e0p 124 5 variability variability NN cord-265978-i0fu8e0p 124 6 was be VBD cord-265978-i0fu8e0p 124 7 slightly slightly RB cord-265978-i0fu8e0p 124 8 higher high JJR cord-265978-i0fu8e0p 124 9 with with IN cord-265978-i0fu8e0p 124 10 S.D S.D NNP cord-265978-i0fu8e0p 124 11 ranged range VBD cord-265978-i0fu8e0p 124 12 from from IN cord-265978-i0fu8e0p 124 13 0.07 0.07 CD cord-265978-i0fu8e0p 124 14 to to IN cord-265978-i0fu8e0p 124 15 0.51 0.51 CD cord-265978-i0fu8e0p 124 16 and and CC cord-265978-i0fu8e0p 124 17 C.V C.V NNP cord-265978-i0fu8e0p 124 18 ranged range VBD cord-265978-i0fu8e0p 124 19 from from IN cord-265978-i0fu8e0p 124 20 0.22 0.22 CD cord-265978-i0fu8e0p 124 21 % % NN cord-265978-i0fu8e0p 124 22 to to IN cord-265978-i0fu8e0p 124 23 2.5 2.5 CD cord-265978-i0fu8e0p 124 24 % % NN cord-265978-i0fu8e0p 124 25 . . . cord-265978-i0fu8e0p 125 1 The the DT cord-265978-i0fu8e0p 125 2 dynamic dynamic JJ cord-265978-i0fu8e0p 125 3 range range NN cord-265978-i0fu8e0p 125 4 of of IN cord-265978-i0fu8e0p 125 5 the the DT cord-265978-i0fu8e0p 125 6 developed develop VBN cord-265978-i0fu8e0p 125 7 qPCR qpcr NN cord-265978-i0fu8e0p 125 8 assay assay NNP cord-265978-i0fu8e0p 125 9 was be VBD cord-265978-i0fu8e0p 125 10 evaluated evaluate VBN cord-265978-i0fu8e0p 125 11 by by IN cord-265978-i0fu8e0p 125 12 carrying carry VBG cord-265978-i0fu8e0p 125 13 out out RP cord-265978-i0fu8e0p 125 14 10-fold 10-fold CD cord-265978-i0fu8e0p 125 15 dilution dilution NN cord-265978-i0fu8e0p 125 16 series series NN cord-265978-i0fu8e0p 125 17 of of IN cord-265978-i0fu8e0p 125 18 : : : cord-265978-i0fu8e0p 125 19 a a LS cord-265978-i0fu8e0p 125 20 ) ) -RRB- cord-265978-i0fu8e0p 125 21 DNA dna NN cord-265978-i0fu8e0p 125 22 plasmid plasmid NN cord-265978-i0fu8e0p 125 23 standard standard NN cord-265978-i0fu8e0p 125 24 in in IN cord-265978-i0fu8e0p 125 25 water water NN cord-265978-i0fu8e0p 125 26 ; ; : cord-265978-i0fu8e0p 125 27 b b LS cord-265978-i0fu8e0p 125 28 ) ) -RRB- cord-265978-i0fu8e0p 125 29 BCoV bcov NN cord-265978-i0fu8e0p 125 30 reference reference NN cord-265978-i0fu8e0p 125 31 strain strain NN cord-265978-i0fu8e0p 125 32 spiked spike VBN cord-265978-i0fu8e0p 125 33 in in IN cord-265978-i0fu8e0p 125 34 nasal nasal NN cord-265978-i0fu8e0p 125 35 / / SYM cord-265978-i0fu8e0p 125 36 fecal fecal JJ cord-265978-i0fu8e0p 125 37 suspension suspension NN cord-265978-i0fu8e0p 125 38 of of IN cord-265978-i0fu8e0p 125 39 non non JJ cord-265978-i0fu8e0p 125 40 - - JJ cord-265978-i0fu8e0p 125 41 infected infected JJ cord-265978-i0fu8e0p 125 42 calves calf NNS cord-265978-i0fu8e0p 125 43 ; ; : cord-265978-i0fu8e0p 125 44 and and CC cord-265978-i0fu8e0p 125 45 c c LS cord-265978-i0fu8e0p 125 46 ) ) -RRB- cord-265978-i0fu8e0p 125 47 BCoV BCoV NNP cord-265978-i0fu8e0p 125 48 cDNA cdna NN cord-265978-i0fu8e0p 125 49 in in IN cord-265978-i0fu8e0p 125 50 water water NN cord-265978-i0fu8e0p 125 51 . . . cord-265978-i0fu8e0p 126 1 Against against IN cord-265978-i0fu8e0p 126 2 the the DT cord-265978-i0fu8e0p 126 3 DNA dna NN cord-265978-i0fu8e0p 126 4 standard standard NN cord-265978-i0fu8e0p 126 5 and and CC cord-265978-i0fu8e0p 126 6 the the DT cord-265978-i0fu8e0p 126 7 BCoV BCoV NNP cord-265978-i0fu8e0p 126 8 spiked spike VBD cord-265978-i0fu8e0p 126 9 in in IN cord-265978-i0fu8e0p 126 10 nasal nasal NN cord-265978-i0fu8e0p 126 11 / / SYM cord-265978-i0fu8e0p 126 12 fecal fecal JJ cord-265978-i0fu8e0p 126 13 suspension suspension NN cord-265978-i0fu8e0p 126 14 , , , cord-265978-i0fu8e0p 126 15 the the DT cord-265978-i0fu8e0p 126 16 PCR PCR NNP cord-265978-i0fu8e0p 126 17 was be VBD cord-265978-i0fu8e0p 126 18 able able JJ cord-265978-i0fu8e0p 126 19 to to TO cord-265978-i0fu8e0p 126 20 detect detect VB cord-265978-i0fu8e0p 126 21 6 6 CD cord-265978-i0fu8e0p 126 22 fold fold VB cord-265978-i0fu8e0p 126 23 differences difference NNS cord-265978-i0fu8e0p 126 24 in in IN cord-265978-i0fu8e0p 126 25 the the DT cord-265978-i0fu8e0p 126 26 starting starting NN cord-265978-i0fu8e0p 126 27 template template NN cord-265978-i0fu8e0p 126 28 concentration concentration NN cord-265978-i0fu8e0p 126 29 over over IN cord-265978-i0fu8e0p 126 30 a a DT cord-265978-i0fu8e0p 126 31 range range NN cord-265978-i0fu8e0p 126 32 of of IN cord-265978-i0fu8e0p 126 33 10 10 CD cord-265978-i0fu8e0p 126 34 3 3 CD cord-265978-i0fu8e0p 126 35 e10 e10 NN cord-265978-i0fu8e0p 126 36 8 8 CD cord-265978-i0fu8e0p 126 37 copies copy NNS cord-265978-i0fu8e0p 126 38 / / SYM cord-265978-i0fu8e0p 126 39 reaction reaction NN cord-265978-i0fu8e0p 126 40 and and CC cord-265978-i0fu8e0p 126 41 10 10 CD cord-265978-i0fu8e0p 126 42 5 5 CD cord-265978-i0fu8e0p 126 43 e10 e10 NN cord-265978-i0fu8e0p 126 44 0 0 CD cord-265978-i0fu8e0p 126 45 TCID TCID NNP cord-265978-i0fu8e0p 126 46 50 50 CD cord-265978-i0fu8e0p 126 47 /ml /ml NFP cord-265978-i0fu8e0p 126 48 , , , cord-265978-i0fu8e0p 126 49 respectively respectively RB cord-265978-i0fu8e0p 126 50 ( ( -LRB- cord-265978-i0fu8e0p 126 51 Fig Fig NNP cord-265978-i0fu8e0p 126 52 . . . cord-265978-i0fu8e0p 126 53 1 1 CD cord-265978-i0fu8e0p 126 54 ) ) -RRB- cord-265978-i0fu8e0p 126 55 . . . cord-265978-i0fu8e0p 127 1 However however RB cord-265978-i0fu8e0p 127 2 , , , cord-265978-i0fu8e0p 127 3 the the DT cord-265978-i0fu8e0p 127 4 BCoV BCoV NNP cord-265978-i0fu8e0p 127 5 cDNA cdna NN cord-265978-i0fu8e0p 127 6 spiked spike VBN cord-265978-i0fu8e0p 127 7 in in IN cord-265978-i0fu8e0p 127 8 water water NN cord-265978-i0fu8e0p 127 9 was be VBD cord-265978-i0fu8e0p 127 10 detected detect VBN cord-265978-i0fu8e0p 127 11 more more RBR cord-265978-i0fu8e0p 127 12 efficiently efficiently RB cord-265978-i0fu8e0p 127 13 to to IN cord-265978-i0fu8e0p 127 14 the the DT cord-265978-i0fu8e0p 127 15 extent extent NN cord-265978-i0fu8e0p 127 16 of of IN cord-265978-i0fu8e0p 127 17 8 8 CD cord-265978-i0fu8e0p 127 18 logs log NNS cord-265978-i0fu8e0p 127 19 of of IN cord-265978-i0fu8e0p 127 20 dilution dilution NN cord-265978-i0fu8e0p 127 21 ( ( -LRB- cord-265978-i0fu8e0p 127 22 Data data NN cord-265978-i0fu8e0p 127 23 not not RB cord-265978-i0fu8e0p 127 24 shown show VBN cord-265978-i0fu8e0p 127 25 ) ) -RRB- cord-265978-i0fu8e0p 127 26 . . . cord-265978-i0fu8e0p 128 1 The the DT cord-265978-i0fu8e0p 128 2 competence competence NN cord-265978-i0fu8e0p 128 3 of of IN cord-265978-i0fu8e0p 128 4 the the DT cord-265978-i0fu8e0p 128 5 developed develop VBN cord-265978-i0fu8e0p 128 6 real real JJ cord-265978-i0fu8e0p 128 7 - - HYPH cord-265978-i0fu8e0p 128 8 time time NN cord-265978-i0fu8e0p 128 9 RT RT NNP cord-265978-i0fu8e0p 128 10 - - HYPH cord-265978-i0fu8e0p 128 11 PCR PCR NNP cord-265978-i0fu8e0p 128 12 assay assay NN cord-265978-i0fu8e0p 128 13 , , , cord-265978-i0fu8e0p 128 14 for for IN cord-265978-i0fu8e0p 128 15 accurate accurate JJ cord-265978-i0fu8e0p 128 16 detection detection NN cord-265978-i0fu8e0p 128 17 of of IN cord-265978-i0fu8e0p 128 18 BCoV BCoV NNP cord-265978-i0fu8e0p 128 19 in in IN cord-265978-i0fu8e0p 128 20 clinical clinical JJ cord-265978-i0fu8e0p 128 21 samples sample NNS cord-265978-i0fu8e0p 128 22 , , , cord-265978-i0fu8e0p 128 23 was be VBD cord-265978-i0fu8e0p 128 24 evaluated evaluate VBN cord-265978-i0fu8e0p 128 25 by by IN cord-265978-i0fu8e0p 128 26 analysis analysis NN cord-265978-i0fu8e0p 128 27 of of IN cord-265978-i0fu8e0p 128 28 103 103 CD cord-265978-i0fu8e0p 128 29 swab swab NN cord-265978-i0fu8e0p 128 30 samples sample NNS cord-265978-i0fu8e0p 128 31 ( ( -LRB- cord-265978-i0fu8e0p 128 32 68 68 CD cord-265978-i0fu8e0p 128 33 fecal fecal JJ cord-265978-i0fu8e0p 128 34 and and CC cord-265978-i0fu8e0p 128 35 35 35 CD cord-265978-i0fu8e0p 128 36 nasal nasal NN cord-265978-i0fu8e0p 128 37 ) ) -RRB- cord-265978-i0fu8e0p 128 38 in in IN cord-265978-i0fu8e0p 128 39 comparison comparison NN cord-265978-i0fu8e0p 128 40 to to IN cord-265978-i0fu8e0p 128 41 the the DT cord-265978-i0fu8e0p 128 42 gel gel NN cord-265978-i0fu8e0p 128 43 - - HYPH cord-265978-i0fu8e0p 128 44 based base VBN cord-265978-i0fu8e0p 128 45 RT RT NNP cord-265978-i0fu8e0p 128 46 - - HYPH cord-265978-i0fu8e0p 128 47 PCR PCR NNP cord-265978-i0fu8e0p 128 48 assay assay NN cord-265978-i0fu8e0p 128 49 ( ( -LRB- cord-265978-i0fu8e0p 128 50 Table Table NNP cord-265978-i0fu8e0p 128 51 4 4 CD cord-265978-i0fu8e0p 128 52 ) ) -RRB- cord-265978-i0fu8e0p 128 53 . . . cord-265978-i0fu8e0p 129 1 The the DT cord-265978-i0fu8e0p 129 2 results result NNS cord-265978-i0fu8e0p 129 3 of of IN cord-265978-i0fu8e0p 129 4 both both DT cord-265978-i0fu8e0p 129 5 assays assay NNS cord-265978-i0fu8e0p 129 6 were be VBD cord-265978-i0fu8e0p 129 7 similar similar JJ cord-265978-i0fu8e0p 129 8 for for IN cord-265978-i0fu8e0p 129 9 the the DT cord-265978-i0fu8e0p 129 10 evaluation evaluation NN cord-265978-i0fu8e0p 129 11 of of IN cord-265978-i0fu8e0p 129 12 65 65 CD cord-265978-i0fu8e0p 129 13 fecal fecal JJ cord-265978-i0fu8e0p 129 14 samples sample NNS cord-265978-i0fu8e0p 129 15 ( ( -LRB- cord-265978-i0fu8e0p 129 16 17 17 CD cord-265978-i0fu8e0p 129 17 positive positive JJ cord-265978-i0fu8e0p 129 18 and and CC cord-265978-i0fu8e0p 129 19 48 48 CD cord-265978-i0fu8e0p 129 20 negative negative JJ cord-265978-i0fu8e0p 129 21 ) ) -RRB- cord-265978-i0fu8e0p 129 22 and and CC cord-265978-i0fu8e0p 129 23 33 33 CD cord-265978-i0fu8e0p 129 24 nasal nasal NN cord-265978-i0fu8e0p 129 25 samples sample NNS cord-265978-i0fu8e0p 129 26 ( ( -LRB- cord-265978-i0fu8e0p 129 27 12 12 CD cord-265978-i0fu8e0p 129 28 positive positive JJ cord-265978-i0fu8e0p 129 29 and and CC cord-265978-i0fu8e0p 129 30 21 21 CD cord-265978-i0fu8e0p 129 31 negative negative JJ cord-265978-i0fu8e0p 129 32 ) ) -RRB- cord-265978-i0fu8e0p 129 33 . . . cord-265978-i0fu8e0p 130 1 However however RB cord-265978-i0fu8e0p 130 2 , , , cord-265978-i0fu8e0p 130 3 three three CD cord-265978-i0fu8e0p 130 4 fecal fecal JJ cord-265978-i0fu8e0p 130 5 and and CC cord-265978-i0fu8e0p 130 6 two two CD cord-265978-i0fu8e0p 130 7 nasal nasal NN cord-265978-i0fu8e0p 130 8 samples sample NNS cord-265978-i0fu8e0p 130 9 tested test VBN cord-265978-i0fu8e0p 130 10 negative negative JJ cord-265978-i0fu8e0p 130 11 by by IN cord-265978-i0fu8e0p 130 12 gelbased gelbased JJ cord-265978-i0fu8e0p 130 13 RT RT NNP cord-265978-i0fu8e0p 130 14 - - HYPH cord-265978-i0fu8e0p 130 15 PCR PCR NNP cord-265978-i0fu8e0p 130 16 were be VBD cord-265978-i0fu8e0p 130 17 found find VBN cord-265978-i0fu8e0p 130 18 to to TO cord-265978-i0fu8e0p 130 19 be be VB cord-265978-i0fu8e0p 130 20 positive positive JJ cord-265978-i0fu8e0p 130 21 by by IN cord-265978-i0fu8e0p 130 22 real real JJ cord-265978-i0fu8e0p 130 23 - - HYPH cord-265978-i0fu8e0p 130 24 time time NN cord-265978-i0fu8e0p 130 25 RT RT NNP cord-265978-i0fu8e0p 130 26 - - HYPH cord-265978-i0fu8e0p 130 27 PCR PCR NNP cord-265978-i0fu8e0p 130 28 . . . cord-265978-i0fu8e0p 131 1 None none NN cord-265978-i0fu8e0p 131 2 of of IN cord-265978-i0fu8e0p 131 3 the the DT cord-265978-i0fu8e0p 131 4 samples sample NNS cord-265978-i0fu8e0p 131 5 tested test VBN cord-265978-i0fu8e0p 131 6 negative negative JJ cord-265978-i0fu8e0p 131 7 by by IN cord-265978-i0fu8e0p 132 1 real real JJ cord-265978-i0fu8e0p 132 2 - - HYPH cord-265978-i0fu8e0p 132 3 time time NN cord-265978-i0fu8e0p 132 4 RT RT NNP cord-265978-i0fu8e0p 132 5 - - HYPH cord-265978-i0fu8e0p 132 6 PCR PCR NNP cord-265978-i0fu8e0p 132 7 was be VBD cord-265978-i0fu8e0p 132 8 found find VBN cord-265978-i0fu8e0p 132 9 positive positive JJ cord-265978-i0fu8e0p 132 10 by by IN cord-265978-i0fu8e0p 132 11 the the DT cord-265978-i0fu8e0p 132 12 gel gel NN cord-265978-i0fu8e0p 132 13 - - HYPH cord-265978-i0fu8e0p 132 14 based base VBN cord-265978-i0fu8e0p 132 15 method method NN cord-265978-i0fu8e0p 132 16 . . . cord-265978-i0fu8e0p 133 1 The the DT cord-265978-i0fu8e0p 133 2 concentration concentration NN cord-265978-i0fu8e0p 133 3 of of IN cord-265978-i0fu8e0p 133 4 BCoV BCoV NNP cord-265978-i0fu8e0p 133 5 RNA RNA NNP cord-265978-i0fu8e0p 133 6 in in IN cord-265978-i0fu8e0p 133 7 the the DT cord-265978-i0fu8e0p 133 8 analyzed analyze VBN cord-265978-i0fu8e0p 133 9 positive positive JJ cord-265978-i0fu8e0p 133 10 samples sample NNS cord-265978-i0fu8e0p 133 11 varied vary VBN cord-265978-i0fu8e0p 133 12 from from IN cord-265978-i0fu8e0p 133 13 2 2 CD cord-265978-i0fu8e0p 133 14 Â â CD cord-265978-i0fu8e0p 133 15 10 10 CD cord-265978-i0fu8e0p 133 16 4 4 CD cord-265978-i0fu8e0p 133 17 to to IN cord-265978-i0fu8e0p 133 18 1.56 1.56 CD cord-265978-i0fu8e0p 133 19 Â â CD cord-265978-i0fu8e0p 133 20 10 10 CD cord-265978-i0fu8e0p 133 21 8 8 CD cord-265978-i0fu8e0p 133 22 copies copy NNS cord-265978-i0fu8e0p 133 23 / / SYM cord-265978-i0fu8e0p 133 24 ml ml NN cord-265978-i0fu8e0p 133 25 for for IN cord-265978-i0fu8e0p 133 26 the the DT cord-265978-i0fu8e0p 133 27 fecal fecal JJ cord-265978-i0fu8e0p 133 28 samples sample NNS cord-265978-i0fu8e0p 133 29 , , , cord-265978-i0fu8e0p 133 30 and and CC cord-265978-i0fu8e0p 133 31 3.77 3.77 CD cord-265978-i0fu8e0p 133 32 Â â CD cord-265978-i0fu8e0p 133 33 10 10 CD cord-265978-i0fu8e0p 133 34 2 2 CD cord-265978-i0fu8e0p 133 35 to to IN cord-265978-i0fu8e0p 133 36 1.56 1.56 CD cord-265978-i0fu8e0p 133 37 Â â CD cord-265978-i0fu8e0p 133 38 10 10 CD cord-265978-i0fu8e0p 133 39 8 8 CD cord-265978-i0fu8e0p 133 40 copies/ copies/ CD cord-265978-i0fu8e0p 133 41 ml ml NN cord-265978-i0fu8e0p 133 42 for for IN cord-265978-i0fu8e0p 133 43 the the DT cord-265978-i0fu8e0p 133 44 nasal nasal NN cord-265978-i0fu8e0p 133 45 samples sample NNS cord-265978-i0fu8e0p 133 46 . . . cord-265978-i0fu8e0p 134 1 It -PRON- PRP cord-265978-i0fu8e0p 134 2 is be VBZ cord-265978-i0fu8e0p 134 3 worthwhile worthwhile JJ cord-265978-i0fu8e0p 134 4 to to TO cord-265978-i0fu8e0p 134 5 mention mention VB cord-265978-i0fu8e0p 134 6 that that IN cord-265978-i0fu8e0p 134 7 the the DT cord-265978-i0fu8e0p 134 8 samples sample NNS cord-265978-i0fu8e0p 134 9 tested test VBD cord-265978-i0fu8e0p 134 10 positive positive JJ cord-265978-i0fu8e0p 134 11 in in IN cord-265978-i0fu8e0p 134 12 real real JJ cord-265978-i0fu8e0p 134 13 - - HYPH cord-265978-i0fu8e0p 134 14 time time NN cord-265978-i0fu8e0p 134 15 RT RT NNP cord-265978-i0fu8e0p 134 16 - - HYPH cord-265978-i0fu8e0p 134 17 PCR PCR NNP cord-265978-i0fu8e0p 134 18 and and CC cord-265978-i0fu8e0p 134 19 negative negative JJ cord-265978-i0fu8e0p 134 20 in in IN cord-265978-i0fu8e0p 134 21 gelbased gelbased JJ cord-265978-i0fu8e0p 134 22 assay assay NN cord-265978-i0fu8e0p 134 23 contained contain VBD cord-265978-i0fu8e0p 134 24 the the DT cord-265978-i0fu8e0p 134 25 least least JJS cord-265978-i0fu8e0p 134 26 virus virus NN cord-265978-i0fu8e0p 134 27 RNA RNA NNP cord-265978-i0fu8e0p 134 28 concentration concentration NN cord-265978-i0fu8e0p 134 29 that that WDT cord-265978-i0fu8e0p 134 30 ranged range VBD cord-265978-i0fu8e0p 134 31 from from IN cord-265978-i0fu8e0p 134 32 2 2 CD cord-265978-i0fu8e0p 134 33 Â â CD cord-265978-i0fu8e0p 134 34 10 10 CD cord-265978-i0fu8e0p 134 35 4 4 CD cord-265978-i0fu8e0p 134 36 to to IN cord-265978-i0fu8e0p 134 37 3.47 3.47 CD cord-265978-i0fu8e0p 134 38 Â â CD cord-265978-i0fu8e0p 134 39 10 10 CD cord-265978-i0fu8e0p 134 40 4 4 CD cord-265978-i0fu8e0p 134 41 for for IN cord-265978-i0fu8e0p 134 42 the the DT cord-265978-i0fu8e0p 134 43 fecal fecal JJ cord-265978-i0fu8e0p 134 44 samples sample NNS cord-265978-i0fu8e0p 134 45 and and CC cord-265978-i0fu8e0p 134 46 3.77 3.77 CD cord-265978-i0fu8e0p 134 47 Â â CD cord-265978-i0fu8e0p 134 48 10 10 CD cord-265978-i0fu8e0p 134 49 2 2 CD cord-265978-i0fu8e0p 134 50 to to IN cord-265978-i0fu8e0p 134 51 2.88 2.88 CD cord-265978-i0fu8e0p 134 52 Â â CD cord-265978-i0fu8e0p 134 53 10 10 CD cord-265978-i0fu8e0p 134 54 3 3 CD cord-265978-i0fu8e0p 134 55 for for IN cord-265978-i0fu8e0p 134 56 the the DT cord-265978-i0fu8e0p 134 57 nasal nasal NN cord-265978-i0fu8e0p 134 58 samples sample NNS cord-265978-i0fu8e0p 134 59 . . . cord-265978-i0fu8e0p 135 1 The the DT cord-265978-i0fu8e0p 135 2 use use NN cord-265978-i0fu8e0p 135 3 of of IN cord-265978-i0fu8e0p 135 4 PCR PCR NNP cord-265978-i0fu8e0p 135 5 in in IN cord-265978-i0fu8e0p 135 6 the the DT cord-265978-i0fu8e0p 135 7 field field NN cord-265978-i0fu8e0p 135 8 of of IN cord-265978-i0fu8e0p 135 9 virus virus NN cord-265978-i0fu8e0p 135 10 disease disease NN cord-265978-i0fu8e0p 135 11 diagnosis diagnosis NN cord-265978-i0fu8e0p 135 12 has have VBZ cord-265978-i0fu8e0p 135 13 increased increase VBN cord-265978-i0fu8e0p 135 14 to to IN cord-265978-i0fu8e0p 135 15 the the DT cord-265978-i0fu8e0p 135 16 point point NN cord-265978-i0fu8e0p 135 17 that that IN cord-265978-i0fu8e0p 135 18 it -PRON- PRP cord-265978-i0fu8e0p 135 19 is be VBZ cord-265978-i0fu8e0p 135 20 now now RB cord-265978-i0fu8e0p 135 21 accepted accept VBN cord-265978-i0fu8e0p 135 22 as as IN cord-265978-i0fu8e0p 135 23 the the DT cord-265978-i0fu8e0p 135 24 new new JJ cord-265978-i0fu8e0p 135 25 gold gold NN cord-265978-i0fu8e0p 135 26 standard standard NN cord-265978-i0fu8e0p 135 27 . . . cord-265978-i0fu8e0p 136 1 Real real JJ cord-265978-i0fu8e0p 136 2 - - HYPH cord-265978-i0fu8e0p 136 3 time time NN cord-265978-i0fu8e0p 136 4 PCR PCR NNP cord-265978-i0fu8e0p 136 5 has have VBZ cord-265978-i0fu8e0p 136 6 catalyzed catalyze VBN cord-265978-i0fu8e0p 136 7 wider wide JJR cord-265978-i0fu8e0p 136 8 acceptance acceptance NN cord-265978-i0fu8e0p 136 9 of of IN cord-265978-i0fu8e0p 136 10 PCR PCR NNP cord-265978-i0fu8e0p 136 11 because because IN cord-265978-i0fu8e0p 136 12 it -PRON- PRP cord-265978-i0fu8e0p 136 13 is be VBZ cord-265978-i0fu8e0p 136 14 more more RBR cord-265978-i0fu8e0p 136 15 rapid rapid JJ cord-265978-i0fu8e0p 136 16 , , , cord-265978-i0fu8e0p 136 17 sensitive sensitive JJ cord-265978-i0fu8e0p 136 18 and and CC cord-265978-i0fu8e0p 136 19 reproducible reproducible JJ cord-265978-i0fu8e0p 136 20 , , , cord-265978-i0fu8e0p 136 21 while while IN cord-265978-i0fu8e0p 136 22 the the DT cord-265978-i0fu8e0p 136 23 risk risk NN cord-265978-i0fu8e0p 136 24 of of IN cord-265978-i0fu8e0p 136 25 carryover carryover NN cord-265978-i0fu8e0p 136 26 contamination contamination NN cord-265978-i0fu8e0p 136 27 is be VBZ cord-265978-i0fu8e0p 136 28 minimized minimize VBN cord-265978-i0fu8e0p 136 29 [ [ -LRB- cord-265978-i0fu8e0p 136 30 17 17 CD cord-265978-i0fu8e0p 136 31 ] ] -RRB- cord-265978-i0fu8e0p 136 32 . . . cord-265978-i0fu8e0p 137 1 In in IN cord-265978-i0fu8e0p 137 2 the the DT cord-265978-i0fu8e0p 137 3 current current JJ cord-265978-i0fu8e0p 137 4 study study NN cord-265978-i0fu8e0p 137 5 , , , cord-265978-i0fu8e0p 137 6 the the DT cord-265978-i0fu8e0p 137 7 potential potential NN cord-265978-i0fu8e0p 137 8 of of IN cord-265978-i0fu8e0p 137 9 real real JJ cord-265978-i0fu8e0p 137 10 - - HYPH cord-265978-i0fu8e0p 137 11 time time NN cord-265978-i0fu8e0p 137 12 PCR PCR NNP cord-265978-i0fu8e0p 137 13 was be VBD cord-265978-i0fu8e0p 137 14 exploited exploit VBN cord-265978-i0fu8e0p 137 15 to to TO cord-265978-i0fu8e0p 137 16 develop develop VB cord-265978-i0fu8e0p 137 17 a a DT cord-265978-i0fu8e0p 137 18 reliable reliable JJ cord-265978-i0fu8e0p 137 19 assay assay NN cord-265978-i0fu8e0p 137 20 for for IN cord-265978-i0fu8e0p 137 21 detection detection NN cord-265978-i0fu8e0p 137 22 and and CC cord-265978-i0fu8e0p 137 23 quantification quantification NN cord-265978-i0fu8e0p 137 24 of of IN cord-265978-i0fu8e0p 137 25 BCoV. bcov. CD cord-265978-i0fu8e0p 138 1 The the DT cord-265978-i0fu8e0p 138 2 success success NN cord-265978-i0fu8e0p 138 3 of of IN cord-265978-i0fu8e0p 138 4 any any DT cord-265978-i0fu8e0p 138 5 PCR PCR NNP cord-265978-i0fu8e0p 138 6 assay assay NN cord-265978-i0fu8e0p 138 7 is be VBZ cord-265978-i0fu8e0p 138 8 highly highly RB cord-265978-i0fu8e0p 138 9 dependent dependent JJ cord-265978-i0fu8e0p 138 10 on on IN cord-265978-i0fu8e0p 138 11 the the DT cord-265978-i0fu8e0p 138 12 primer primer NN cord-265978-i0fu8e0p 138 13 design design NN cord-265978-i0fu8e0p 138 14 and and CC cord-265978-i0fu8e0p 138 15 its -PRON- PRP$ cord-265978-i0fu8e0p 138 16 ability ability NN cord-265978-i0fu8e0p 138 17 to to TO cord-265978-i0fu8e0p 138 18 recognize recognize VB cord-265978-i0fu8e0p 138 19 all all DT cord-265978-i0fu8e0p 138 20 strains strain NNS cord-265978-i0fu8e0p 138 21 and and CC cord-265978-i0fu8e0p 138 22 variants variant NNS cord-265978-i0fu8e0p 138 23 of of IN cord-265978-i0fu8e0p 138 24 the the DT cord-265978-i0fu8e0p 138 25 target target NN cord-265978-i0fu8e0p 138 26 organism organism NN cord-265978-i0fu8e0p 138 27 . . . cord-265978-i0fu8e0p 139 1 Just just RB cord-265978-i0fu8e0p 139 2 as as RB cord-265978-i0fu8e0p 139 3 importantly importantly RB cord-265978-i0fu8e0p 139 4 , , , cord-265978-i0fu8e0p 139 5 the the DT cord-265978-i0fu8e0p 139 6 designed design VBN cord-265978-i0fu8e0p 139 7 primers primer NNS cord-265978-i0fu8e0p 139 8 should should MD cord-265978-i0fu8e0p 139 9 not not RB cord-265978-i0fu8e0p 139 10 cross cross VB cord-265978-i0fu8e0p 139 11 react react VB cord-265978-i0fu8e0p 139 12 with with IN cord-265978-i0fu8e0p 139 13 other other JJ cord-265978-i0fu8e0p 139 14 viruses virus NNS cord-265978-i0fu8e0p 139 15 that that WDT cord-265978-i0fu8e0p 139 16 may may MD cord-265978-i0fu8e0p 139 17 implicate implicate VB cord-265978-i0fu8e0p 139 18 in in IN cord-265978-i0fu8e0p 139 19 the the DT cord-265978-i0fu8e0p 139 20 same same JJ cord-265978-i0fu8e0p 139 21 disease disease NN cord-265978-i0fu8e0p 139 22 form(s form(s NNP cord-265978-i0fu8e0p 139 23 ) ) -RRB- cord-265978-i0fu8e0p 139 24 . . . cord-265978-i0fu8e0p 140 1 The the DT cord-265978-i0fu8e0p 140 2 nucleocapsid nucleocapsid NN cord-265978-i0fu8e0p 140 3 ( ( -LRB- cord-265978-i0fu8e0p 140 4 N N NNP cord-265978-i0fu8e0p 140 5 ) ) -RRB- cord-265978-i0fu8e0p 140 6 gene gene NN cord-265978-i0fu8e0p 140 7 of of IN cord-265978-i0fu8e0p 140 8 BCoV BCoV NNP cord-265978-i0fu8e0p 140 9 has have VBZ cord-265978-i0fu8e0p 140 10 been be VBN cord-265978-i0fu8e0p 140 11 shown show VBN cord-265978-i0fu8e0p 140 12 to to TO cord-265978-i0fu8e0p 140 13 be be VB cord-265978-i0fu8e0p 140 14 highly highly RB cord-265978-i0fu8e0p 140 15 conserved conserve VBN cord-265978-i0fu8e0p 140 16 due due JJ cord-265978-i0fu8e0p 140 17 to to IN cord-265978-i0fu8e0p 140 18 strong strong JJ cord-265978-i0fu8e0p 140 19 selective selective JJ cord-265978-i0fu8e0p 140 20 structural structural JJ cord-265978-i0fu8e0p 140 21 constraints constraint NNS cord-265978-i0fu8e0p 140 22 that that WDT cord-265978-i0fu8e0p 140 23 limit limit VBP cord-265978-i0fu8e0p 140 24 its -PRON- PRP$ cord-265978-i0fu8e0p 140 25 revolution revolution NN cord-265978-i0fu8e0p 140 26 [ [ -LRB- cord-265978-i0fu8e0p 140 27 18 18 CD cord-265978-i0fu8e0p 140 28 , , , cord-265978-i0fu8e0p 140 29 19 19 CD cord-265978-i0fu8e0p 140 30 ] ] -RRB- cord-265978-i0fu8e0p 140 31 . . . cord-265978-i0fu8e0p 141 1 Therefore therefore RB cord-265978-i0fu8e0p 141 2 , , , cord-265978-i0fu8e0p 141 3 a a DT cord-265978-i0fu8e0p 141 4 wide wide JJ cord-265978-i0fu8e0p 141 5 range range NN cord-265978-i0fu8e0p 141 6 of of IN cord-265978-i0fu8e0p 141 7 published publish VBN cord-265978-i0fu8e0p 141 8 sequences sequence NNS cord-265978-i0fu8e0p 141 9 of of IN cord-265978-i0fu8e0p 141 10 BCoV BCoV NNP cord-265978-i0fu8e0p 141 11 N n CD cord-265978-i0fu8e0p 141 12 gene gene NN cord-265978-i0fu8e0p 141 13 were be VBD cord-265978-i0fu8e0p 141 14 aligned align VBN cord-265978-i0fu8e0p 141 15 together together RB cord-265978-i0fu8e0p 141 16 and and CC cord-265978-i0fu8e0p 141 17 against against IN cord-265978-i0fu8e0p 141 18 other other JJ cord-265978-i0fu8e0p 141 19 coronaviruses coronaviruse NNS cord-265978-i0fu8e0p 141 20 that that WDT cord-265978-i0fu8e0p 141 21 belong belong VBP cord-265978-i0fu8e0p 141 22 to to IN cord-265978-i0fu8e0p 141 23 the the DT cord-265978-i0fu8e0p 141 24 three three CD cord-265978-i0fu8e0p 141 25 known know VBN cord-265978-i0fu8e0p 141 26 antigenic antigenic JJ cord-265978-i0fu8e0p 141 27 groups group NNS cord-265978-i0fu8e0p 141 28 . . . cord-265978-i0fu8e0p 142 1 Potential potential JJ cord-265978-i0fu8e0p 142 2 target target NN cord-265978-i0fu8e0p 142 3 sequences sequence NNS cord-265978-i0fu8e0p 142 4 that that WDT cord-265978-i0fu8e0p 142 5 were be VBD cord-265978-i0fu8e0p 142 6 highly highly RB cord-265978-i0fu8e0p 142 7 conserved conserve VBN cord-265978-i0fu8e0p 142 8 in in IN cord-265978-i0fu8e0p 142 9 different different JJ cord-265978-i0fu8e0p 142 10 strains strain NNS cord-265978-i0fu8e0p 142 11 of of IN cord-265978-i0fu8e0p 142 12 bovine bovine JJ cord-265978-i0fu8e0p 142 13 respiratory respiratory JJ cord-265978-i0fu8e0p 142 14 and and CC cord-265978-i0fu8e0p 142 15 enteric enteric JJ cord-265978-i0fu8e0p 142 16 coronaviruses coronaviruse NNS cord-265978-i0fu8e0p 142 17 were be VBD cord-265978-i0fu8e0p 142 18 identified identify VBN cord-265978-i0fu8e0p 142 19 . . . cord-265978-i0fu8e0p 143 1 These these DT cord-265978-i0fu8e0p 143 2 sequences sequence NNS cord-265978-i0fu8e0p 143 3 , , , cord-265978-i0fu8e0p 143 4 however however RB cord-265978-i0fu8e0p 143 5 , , , cord-265978-i0fu8e0p 143 6 share share VBP cord-265978-i0fu8e0p 143 7 many many JJ cord-265978-i0fu8e0p 143 8 similarities similarity NNS cord-265978-i0fu8e0p 143 9 with with IN cord-265978-i0fu8e0p 143 10 some some DT cord-265978-i0fu8e0p 143 11 group group NN cord-265978-i0fu8e0p 143 12 II ii CD cord-265978-i0fu8e0p 143 13 coronaviruses coronaviruse NNS cord-265978-i0fu8e0p 143 14 that that WDT cord-265978-i0fu8e0p 143 15 were be VBD cord-265978-i0fu8e0p 143 16 proposed propose VBN cord-265978-i0fu8e0p 143 17 to to TO cord-265978-i0fu8e0p 143 18 originate originate VB cord-265978-i0fu8e0p 143 19 from from IN cord-265978-i0fu8e0p 143 20 BCoV BCoV NNP cord-265978-i0fu8e0p 143 21 [ [ -LRB- cord-265978-i0fu8e0p 143 22 20e22 20e22 NNP cord-265978-i0fu8e0p 143 23 ] ] -RRB- cord-265978-i0fu8e0p 143 24 , , , cord-265978-i0fu8e0p 143 25 a a DT cord-265978-i0fu8e0p 143 26 mater mater NN cord-265978-i0fu8e0p 143 27 that that WDT cord-265978-i0fu8e0p 143 28 was be VBD cord-265978-i0fu8e0p 143 29 unavoidable unavoidable JJ cord-265978-i0fu8e0p 143 30 . . . cord-265978-i0fu8e0p 144 1 More More JJR cord-265978-i0fu8e0p 144 2 than than IN cord-265978-i0fu8e0p 144 3 three three CD cord-265978-i0fu8e0p 144 4 primer primer NN cord-265978-i0fu8e0p 144 5 pairs pair NNS cord-265978-i0fu8e0p 144 6 were be VBD cord-265978-i0fu8e0p 144 7 synthesized synthesize VBN cord-265978-i0fu8e0p 144 8 and and CC cord-265978-i0fu8e0p 144 9 screened screen VBN cord-265978-i0fu8e0p 144 10 for for IN cord-265978-i0fu8e0p 144 11 initial initial JJ cord-265978-i0fu8e0p 144 12 evaluation evaluation NN cord-265978-i0fu8e0p 144 13 . . . cord-265978-i0fu8e0p 145 1 Of of IN cord-265978-i0fu8e0p 145 2 which which WDT cord-265978-i0fu8e0p 145 3 , , , cord-265978-i0fu8e0p 145 4 a a DT cord-265978-i0fu8e0p 145 5 set set NN cord-265978-i0fu8e0p 145 6 of of IN cord-265978-i0fu8e0p 145 7 primers primer NNS cord-265978-i0fu8e0p 145 8 that that WDT cord-265978-i0fu8e0p 145 9 amplify amplify VBP cord-265978-i0fu8e0p 145 10 a a DT cord-265978-i0fu8e0p 145 11 fragment fragment NN cord-265978-i0fu8e0p 145 12 of of IN cord-265978-i0fu8e0p 145 13 236 236 CD cord-265978-i0fu8e0p 145 14 bp bp NNP cord-265978-i0fu8e0p 145 15 of of IN cord-265978-i0fu8e0p 145 16 N N NNP cord-265978-i0fu8e0p 145 17 gene gene NN cord-265978-i0fu8e0p 145 18 was be VBD cord-265978-i0fu8e0p 145 19 found find VBN cord-265978-i0fu8e0p 145 20 to to TO cord-265978-i0fu8e0p 145 21 be be VB cord-265978-i0fu8e0p 145 22 most most RBS cord-265978-i0fu8e0p 145 23 sensitive sensitive JJ cord-265978-i0fu8e0p 145 24 ( ( -LRB- cord-265978-i0fu8e0p 145 25 Table table NN cord-265978-i0fu8e0p 145 26 2 2 CD cord-265978-i0fu8e0p 145 27 ) ) -RRB- cord-265978-i0fu8e0p 145 28 . . . cord-265978-i0fu8e0p 146 1 In in IN cord-265978-i0fu8e0p 146 2 addition addition NN cord-265978-i0fu8e0p 146 3 to to IN cord-265978-i0fu8e0p 146 4 the the DT cord-265978-i0fu8e0p 146 5 choice choice NN cord-265978-i0fu8e0p 146 6 of of IN cord-265978-i0fu8e0p 146 7 target target NN cord-265978-i0fu8e0p 146 8 region region NN cord-265978-i0fu8e0p 146 9 , , , cord-265978-i0fu8e0p 146 10 the the DT cord-265978-i0fu8e0p 146 11 design design NN cord-265978-i0fu8e0p 146 12 of of IN cord-265978-i0fu8e0p 146 13 " " `` cord-265978-i0fu8e0p 146 14 inhouse inhouse JJ cord-265978-i0fu8e0p 146 15 " " '' cord-265978-i0fu8e0p 146 16 real real JJ cord-265978-i0fu8e0p 146 17 - - HYPH cord-265978-i0fu8e0p 146 18 time time NN cord-265978-i0fu8e0p 146 19 PCR PCR NNP cord-265978-i0fu8e0p 146 20 protocols protocol NNS cord-265978-i0fu8e0p 146 21 requires require VBZ cord-265978-i0fu8e0p 146 22 the the DT cord-265978-i0fu8e0p 146 23 optimization optimization NN cord-265978-i0fu8e0p 146 24 of of IN cord-265978-i0fu8e0p 146 25 several several JJ cord-265978-i0fu8e0p 146 26 amplification amplification NN cord-265978-i0fu8e0p 146 27 conditions condition NNS cord-265978-i0fu8e0p 146 28 . . . cord-265978-i0fu8e0p 147 1 The the DT cord-265978-i0fu8e0p 147 2 key key JJ cord-265978-i0fu8e0p 147 3 elements element NNS cord-265978-i0fu8e0p 147 4 of of IN cord-265978-i0fu8e0p 147 5 such such JJ cord-265978-i0fu8e0p 147 6 optimization optimization NN cord-265978-i0fu8e0p 147 7 include include VBP cord-265978-i0fu8e0p 147 8 ; ; : cord-265978-i0fu8e0p 147 9 the the DT cord-265978-i0fu8e0p 147 10 magnesium magnesium NN cord-265978-i0fu8e0p 147 11 chloride chloride NN cord-265978-i0fu8e0p 147 12 concentration concentration NN cord-265978-i0fu8e0p 147 13 , , , cord-265978-i0fu8e0p 147 14 which which WDT cord-265978-i0fu8e0p 147 15 allows allow VBZ cord-265978-i0fu8e0p 147 16 the the DT cord-265978-i0fu8e0p 147 17 polymerase polymerase NN cord-265978-i0fu8e0p 147 18 enzyme enzyme NN cord-265978-i0fu8e0p 147 19 to to TO cord-265978-i0fu8e0p 147 20 function function VB cord-265978-i0fu8e0p 147 21 at at IN cord-265978-i0fu8e0p 147 22 an an DT cord-265978-i0fu8e0p 147 23 optimal optimal JJ cord-265978-i0fu8e0p 147 24 level level NN cord-265978-i0fu8e0p 147 25 , , , cord-265978-i0fu8e0p 147 26 the the DT cord-265978-i0fu8e0p 147 27 concentration concentration NN cord-265978-i0fu8e0p 147 28 of of IN cord-265978-i0fu8e0p 147 29 different different JJ cord-265978-i0fu8e0p 147 30 primers primer NNS cord-265978-i0fu8e0p 147 31 used use VBN cord-265978-i0fu8e0p 147 32 , , , cord-265978-i0fu8e0p 147 33 which which WDT cord-265978-i0fu8e0p 147 34 affect affect VBP cord-265978-i0fu8e0p 147 35 the the DT cord-265978-i0fu8e0p 147 36 sensitivity sensitivity NN cord-265978-i0fu8e0p 147 37 and and CC cord-265978-i0fu8e0p 147 38 linearity linearity NN cord-265978-i0fu8e0p 147 39 of of IN cord-265978-i0fu8e0p 147 40 the the DT cord-265978-i0fu8e0p 147 41 assay assay NN cord-265978-i0fu8e0p 147 42 , , , cord-265978-i0fu8e0p 147 43 and and CC cord-265978-i0fu8e0p 147 44 the the DT cord-265978-i0fu8e0p 147 45 temperature temperature NN cord-265978-i0fu8e0p 147 46 of of IN cord-265978-i0fu8e0p 147 47 primer primer NN cord-265978-i0fu8e0p 147 48 annealing annealing NN cord-265978-i0fu8e0p 147 49 , , , cord-265978-i0fu8e0p 147 50 which which WDT cord-265978-i0fu8e0p 147 51 affects affect VBZ cord-265978-i0fu8e0p 147 52 the the DT cord-265978-i0fu8e0p 147 53 specificity specificity NN cord-265978-i0fu8e0p 147 54 of of IN cord-265978-i0fu8e0p 147 55 the the DT cord-265978-i0fu8e0p 147 56 reaction reaction NN cord-265978-i0fu8e0p 147 57 [ [ -LRB- cord-265978-i0fu8e0p 147 58 23 23 CD cord-265978-i0fu8e0p 147 59 , , , cord-265978-i0fu8e0p 147 60 24 24 CD cord-265978-i0fu8e0p 147 61 ] ] -RRB- cord-265978-i0fu8e0p 147 62 . . . cord-265978-i0fu8e0p 148 1 The the DT cord-265978-i0fu8e0p 148 2 current current JJ cord-265978-i0fu8e0p 148 3 assay assay NN cord-265978-i0fu8e0p 148 4 was be VBD cord-265978-i0fu8e0p 148 5 optimized optimize VBN cord-265978-i0fu8e0p 148 6 using use VBG cord-265978-i0fu8e0p 148 7 the the DT cord-265978-i0fu8e0p 148 8 cell cell NN cord-265978-i0fu8e0p 148 9 - - HYPH cord-265978-i0fu8e0p 148 10 culture culture NN cord-265978-i0fu8e0p 148 11 grown grow VBN cord-265978-i0fu8e0p 148 12 BCoV BCoV NNP cord-265978-i0fu8e0p 148 13 , , , cord-265978-i0fu8e0p 148 14 strain strain VB cord-265978-i0fu8e0p 148 15 Mebus Mebus NNP cord-265978-i0fu8e0p 148 16 , , , cord-265978-i0fu8e0p 148 17 by by IN cord-265978-i0fu8e0p 148 18 varying vary VBG cord-265978-i0fu8e0p 148 19 each each DT cord-265978-i0fu8e0p 148 20 of of IN cord-265978-i0fu8e0p 148 21 these these DT cord-265978-i0fu8e0p 148 22 parameters parameter NNS cord-265978-i0fu8e0p 148 23 individually individually RB cord-265978-i0fu8e0p 148 24 . . . cord-265978-i0fu8e0p 149 1 The the DT cord-265978-i0fu8e0p 149 2 optimal optimal JJ cord-265978-i0fu8e0p 149 3 amplification amplification NN cord-265978-i0fu8e0p 149 4 conditions condition NNS cord-265978-i0fu8e0p 149 5 were be VBD cord-265978-i0fu8e0p 149 6 assessed assess VBN cord-265978-i0fu8e0p 149 7 by by IN cord-265978-i0fu8e0p 149 8 reporting report VBG cord-265978-i0fu8e0p 149 9 the the DT cord-265978-i0fu8e0p 149 10 fluorescence fluorescence NN cord-265978-i0fu8e0p 149 11 intensity intensity NN cord-265978-i0fu8e0p 149 12 and and CC cord-265978-i0fu8e0p 149 13 the the DT cord-265978-i0fu8e0p 149 14 value value NN cord-265978-i0fu8e0p 149 15 of of IN cord-265978-i0fu8e0p 149 16 threshold threshold NN cord-265978-i0fu8e0p 149 17 cycles cycle NNS cord-265978-i0fu8e0p 149 18 ( ( -LRB- cord-265978-i0fu8e0p 149 19 C C NNP cord-265978-i0fu8e0p 149 20 T T NNP cord-265978-i0fu8e0p 149 21 ) ) -RRB- cord-265978-i0fu8e0p 149 22 . . . cord-265978-i0fu8e0p 150 1 The the DT cord-265978-i0fu8e0p 150 2 use use NN cord-265978-i0fu8e0p 150 3 of of IN cord-265978-i0fu8e0p 150 4 fecal fecal JJ cord-265978-i0fu8e0p 150 5 and and CC cord-265978-i0fu8e0p 150 6 nasal nasal NN cord-265978-i0fu8e0p 150 7 swab swab NN cord-265978-i0fu8e0p 150 8 samples sample NNS cord-265978-i0fu8e0p 150 9 as as IN cord-265978-i0fu8e0p 150 10 the the DT cord-265978-i0fu8e0p 150 11 most most RBS cord-265978-i0fu8e0p 150 12 frequent frequent JJ cord-265978-i0fu8e0p 150 13 matrices matrix NNS cord-265978-i0fu8e0p 150 14 for for IN cord-265978-i0fu8e0p 150 15 detection detection NN cord-265978-i0fu8e0p 150 16 of of IN cord-265978-i0fu8e0p 150 17 BCoV BCoV NNP cord-265978-i0fu8e0p 150 18 in in IN cord-265978-i0fu8e0p 150 19 diseased diseased JJ cord-265978-i0fu8e0p 150 20 animals animal NNS cord-265978-i0fu8e0p 150 21 constitutes constitute VBZ cord-265978-i0fu8e0p 150 22 one one CD cord-265978-i0fu8e0p 150 23 of of IN cord-265978-i0fu8e0p 150 24 the the DT cord-265978-i0fu8e0p 150 25 significant significant JJ cord-265978-i0fu8e0p 150 26 problems problem NNS cord-265978-i0fu8e0p 150 27 that that WDT cord-265978-i0fu8e0p 150 28 may may MD cord-265978-i0fu8e0p 150 29 hinder hinder VB cord-265978-i0fu8e0p 150 30 the the DT cord-265978-i0fu8e0p 150 31 performance performance NN cord-265978-i0fu8e0p 150 32 of of IN cord-265978-i0fu8e0p 150 33 RT RT NNP cord-265978-i0fu8e0p 150 34 - - HYPH cord-265978-i0fu8e0p 150 35 PCR PCR NNP cord-265978-i0fu8e0p 150 36 assays assay NNS cord-265978-i0fu8e0p 150 37 . . . cord-265978-i0fu8e0p 151 1 Considerable considerable JJ cord-265978-i0fu8e0p 151 2 existence existence NN cord-265978-i0fu8e0p 151 3 of of IN cord-265978-i0fu8e0p 151 4 the the DT cord-265978-i0fu8e0p 151 5 bile bile NN cord-265978-i0fu8e0p 151 6 salts salt NNS cord-265978-i0fu8e0p 151 7 and and CC cord-265978-i0fu8e0p 151 8 the the DT cord-265978-i0fu8e0p 151 9 complex complex JJ cord-265978-i0fu8e0p 151 10 polysaccharides polysaccharide NNS cord-265978-i0fu8e0p 151 11 in in IN cord-265978-i0fu8e0p 151 12 these these DT cord-265978-i0fu8e0p 151 13 matrices matrix NNS cord-265978-i0fu8e0p 151 14 can can MD cord-265978-i0fu8e0p 151 15 either either CC cord-265978-i0fu8e0p 151 16 block block VB cord-265978-i0fu8e0p 151 17 the the DT cord-265978-i0fu8e0p 151 18 enzyme enzyme NN cord-265978-i0fu8e0p 151 19 activity activity NN cord-265978-i0fu8e0p 151 20 or or CC cord-265978-i0fu8e0p 151 21 reduce reduce VB cord-265978-i0fu8e0p 151 22 the the DT cord-265978-i0fu8e0p 151 23 Magnesium magnesium NN cord-265978-i0fu8e0p 151 24 salt salt NN cord-265978-i0fu8e0p 151 25 availability availability NN cord-265978-i0fu8e0p 151 26 [ [ -LRB- cord-265978-i0fu8e0p 151 27 25 25 CD cord-265978-i0fu8e0p 151 28 ] ] -RRB- cord-265978-i0fu8e0p 151 29 . . . cord-265978-i0fu8e0p 152 1 Therefore therefore RB cord-265978-i0fu8e0p 152 2 , , , cord-265978-i0fu8e0p 152 3 monitoring monitor VBG cord-265978-i0fu8e0p 152 4 PCR PCR NNP cord-265978-i0fu8e0p 152 5 inhibitors inhibitor NNS cord-265978-i0fu8e0p 152 6 in in IN cord-265978-i0fu8e0p 152 7 the the DT cord-265978-i0fu8e0p 152 8 utilized utilize VBN cord-265978-i0fu8e0p 152 9 samples sample NNS cord-265978-i0fu8e0p 152 10 is be VBZ cord-265978-i0fu8e0p 152 11 very very RB cord-265978-i0fu8e0p 152 12 important important JJ cord-265978-i0fu8e0p 152 13 to to TO cord-265978-i0fu8e0p 152 14 avoid avoid VB cord-265978-i0fu8e0p 152 15 false false JJ cord-265978-i0fu8e0p 152 16 negative negative JJ cord-265978-i0fu8e0p 152 17 results result NNS cord-265978-i0fu8e0p 152 18 . . . cord-265978-i0fu8e0p 153 1 One one CD cord-265978-i0fu8e0p 153 2 of of IN cord-265978-i0fu8e0p 153 3 the the DT cord-265978-i0fu8e0p 153 4 most most RBS cord-265978-i0fu8e0p 153 5 important important JJ cord-265978-i0fu8e0p 153 6 methods method NNS cord-265978-i0fu8e0p 153 7 for for IN cord-265978-i0fu8e0p 153 8 monitoring monitor VBG cord-265978-i0fu8e0p 153 9 PCR PCR NNP cord-265978-i0fu8e0p 153 10 inhibitors inhibitor NNS cord-265978-i0fu8e0p 153 11 is be VBZ cord-265978-i0fu8e0p 153 12 the the DT cord-265978-i0fu8e0p 153 13 inclusion inclusion NN cord-265978-i0fu8e0p 153 14 and/or and/or CC cord-265978-i0fu8e0p 153 15 detection detection NN cord-265978-i0fu8e0p 153 16 of of IN cord-265978-i0fu8e0p 153 17 an an DT cord-265978-i0fu8e0p 153 18 internal internal JJ cord-265978-i0fu8e0p 153 19 positive positive JJ cord-265978-i0fu8e0p 153 20 control control NN cord-265978-i0fu8e0p 153 21 ( ( -LRB- cord-265978-i0fu8e0p 153 22 IPC IPC NNP cord-265978-i0fu8e0p 153 23 ) ) -RRB- cord-265978-i0fu8e0p 153 24 in in IN cord-265978-i0fu8e0p 153 25 the the DT cord-265978-i0fu8e0p 153 26 test test NN cord-265978-i0fu8e0p 153 27 samples sample NNS cord-265978-i0fu8e0p 153 28 [ [ -LRB- cord-265978-i0fu8e0p 153 29 26 26 CD cord-265978-i0fu8e0p 153 30 ] ] -RRB- cord-265978-i0fu8e0p 153 31 . . . cord-265978-i0fu8e0p 154 1 The the DT cord-265978-i0fu8e0p 154 2 added add VBN cord-265978-i0fu8e0p 154 3 advantage advantage NN cord-265978-i0fu8e0p 154 4 of of IN cord-265978-i0fu8e0p 154 5 using use VBG cord-265978-i0fu8e0p 154 6 an an DT cord-265978-i0fu8e0p 154 7 IPC IPC NNP cord-265978-i0fu8e0p 154 8 is be VBZ cord-265978-i0fu8e0p 154 9 the the DT cord-265978-i0fu8e0p 154 10 ability ability NN cord-265978-i0fu8e0p 154 11 to to TO cord-265978-i0fu8e0p 154 12 control control VB cord-265978-i0fu8e0p 154 13 and and CC cord-265978-i0fu8e0p 154 14 normalize normalize VB cord-265978-i0fu8e0p 154 15 the the DT cord-265978-i0fu8e0p 154 16 variable variable JJ cord-265978-i0fu8e0p 154 17 conditions condition NNS cord-265978-i0fu8e0p 154 18 of of IN cord-265978-i0fu8e0p 154 19 the the DT cord-265978-i0fu8e0p 154 20 assay assay NN cord-265978-i0fu8e0p 154 21 starting start VBG cord-265978-i0fu8e0p 154 22 from from IN cord-265978-i0fu8e0p 154 23 the the DT cord-265978-i0fu8e0p 154 24 efficiency efficiency NN cord-265978-i0fu8e0p 154 25 of of IN cord-265978-i0fu8e0p 154 26 sample sample NN cord-265978-i0fu8e0p 154 27 extraction extraction NN cord-265978-i0fu8e0p 154 28 and and CC cord-265978-i0fu8e0p 154 29 ending end VBG cord-265978-i0fu8e0p 154 30 with with IN cord-265978-i0fu8e0p 154 31 the the DT cord-265978-i0fu8e0p 154 32 real real JJ cord-265978-i0fu8e0p 154 33 - - HYPH cord-265978-i0fu8e0p 154 34 time time NN cord-265978-i0fu8e0p 154 35 amplification/ amplification/ CD cord-265978-i0fu8e0p 154 36 detection detection NN cord-265978-i0fu8e0p 154 37 . . . cord-265978-i0fu8e0p 155 1 In in IN cord-265978-i0fu8e0p 155 2 the the DT cord-265978-i0fu8e0p 155 3 process process NN cord-265978-i0fu8e0p 155 4 of of IN cord-265978-i0fu8e0p 155 5 developing develop VBG cord-265978-i0fu8e0p 155 6 the the DT cord-265978-i0fu8e0p 155 7 present present JJ cord-265978-i0fu8e0p 155 8 assay assay NN cord-265978-i0fu8e0p 155 9 , , , cord-265978-i0fu8e0p 155 10 a a DT cord-265978-i0fu8e0p 155 11 primer primer NN cord-265978-i0fu8e0p 155 12 set set VBN cord-265978-i0fu8e0p 155 13 specific specific JJ cord-265978-i0fu8e0p 155 14 for for IN cord-265978-i0fu8e0p 155 15 the the DT cord-265978-i0fu8e0p 155 16 house house NN cord-265978-i0fu8e0p 155 17 keeping keep VBG cord-265978-i0fu8e0p 155 18 gene gene NN cord-265978-i0fu8e0p 155 19 " " `` cord-265978-i0fu8e0p 155 20 Glyceraldehyde-3-phosphate glyceraldehyde-3-phosphate NN cord-265978-i0fu8e0p 155 21 dehydrogenase dehydrogenase NN cord-265978-i0fu8e0p 155 22 ( ( -LRB- cord-265978-i0fu8e0p 155 23 GAPDH GAPDH NNP cord-265978-i0fu8e0p 155 24 ) ) -RRB- cord-265978-i0fu8e0p 155 25 " " '' cord-265978-i0fu8e0p 155 26 of of IN cord-265978-i0fu8e0p 155 27 bovine bovine JJ cord-265978-i0fu8e0p 155 28 species specie NNS cord-265978-i0fu8e0p 155 29 was be VBD cord-265978-i0fu8e0p 155 30 included include VBN cord-265978-i0fu8e0p 155 31 in in IN cord-265978-i0fu8e0p 155 32 the the DT cord-265978-i0fu8e0p 155 33 reaction reaction NN cord-265978-i0fu8e0p 155 34 . . . cord-265978-i0fu8e0p 156 1 Specific specific JJ cord-265978-i0fu8e0p 156 2 identification identification NN cord-265978-i0fu8e0p 156 3 of of IN cord-265978-i0fu8e0p 156 4 the the DT cord-265978-i0fu8e0p 156 5 IPC IPC NNP cord-265978-i0fu8e0p 156 6 product product NN cord-265978-i0fu8e0p 156 7 by by IN cord-265978-i0fu8e0p 156 8 melt melt NN cord-265978-i0fu8e0p 156 9 curve curve NN cord-265978-i0fu8e0p 156 10 analysis analysis NN cord-265978-i0fu8e0p 156 11 revealed reveal VBD cord-265978-i0fu8e0p 156 12 a a DT cord-265978-i0fu8e0p 156 13 clearly clearly RB cord-265978-i0fu8e0p 156 14 distinguished distinguished JJ cord-265978-i0fu8e0p 156 15 melt melt NN cord-265978-i0fu8e0p 156 16 peak peak NN cord-265978-i0fu8e0p 156 17 of of IN cord-265978-i0fu8e0p 156 18 82.54 82.54 CD cord-265978-i0fu8e0p 156 19 AE AE NNP cord-265978-i0fu8e0p 156 20 0.32 0.32 CD cord-265978-i0fu8e0p 156 21 C. C. NNP cord-265978-i0fu8e0p 156 22 Analysis Analysis NNP cord-265978-i0fu8e0p 156 23 of of IN cord-265978-i0fu8e0p 156 24 variance variance NN cord-265978-i0fu8e0p 156 25 revealed reveal VBD cord-265978-i0fu8e0p 156 26 no no DT cord-265978-i0fu8e0p 156 27 significant significant JJ cord-265978-i0fu8e0p 156 28 differences difference NNS cord-265978-i0fu8e0p 156 29 in in IN cord-265978-i0fu8e0p 156 30 the the DT cord-265978-i0fu8e0p 156 31 assay assay NN cord-265978-i0fu8e0p 156 32 performance performance NN cord-265978-i0fu8e0p 156 33 between between IN cord-265978-i0fu8e0p 156 34 monoplex monoplex NNP cord-265978-i0fu8e0p 156 35 and and CC cord-265978-i0fu8e0p 156 36 duplex duplex NN cord-265978-i0fu8e0p 156 37 reactions reaction NNS cord-265978-i0fu8e0p 156 38 in in IN cord-265978-i0fu8e0p 156 39 terms term NNS cord-265978-i0fu8e0p 156 40 of of IN cord-265978-i0fu8e0p 156 41 specificity specificity NN cord-265978-i0fu8e0p 156 42 , , , cord-265978-i0fu8e0p 156 43 sensitivity sensitivity NN cord-265978-i0fu8e0p 156 44 and and CC cord-265978-i0fu8e0p 156 45 linearity linearity NN cord-265978-i0fu8e0p 156 46 ( ( -LRB- cord-265978-i0fu8e0p 156 47 data datum NNS cord-265978-i0fu8e0p 156 48 not not RB cord-265978-i0fu8e0p 156 49 shown show VBN cord-265978-i0fu8e0p 156 50 ) ) -RRB- cord-265978-i0fu8e0p 156 51 . . . cord-265978-i0fu8e0p 157 1 This this DT cord-265978-i0fu8e0p 157 2 implies imply VBZ cord-265978-i0fu8e0p 157 3 that that IN cord-265978-i0fu8e0p 157 4 co co NN cord-265978-i0fu8e0p 157 5 - - NN cord-265978-i0fu8e0p 157 6 amplification amplification NN cord-265978-i0fu8e0p 157 7 of of IN cord-265978-i0fu8e0p 157 8 the the DT cord-265978-i0fu8e0p 157 9 IPC IPC NNP cord-265978-i0fu8e0p 157 10 does do VBZ cord-265978-i0fu8e0p 157 11 not not RB cord-265978-i0fu8e0p 157 12 affect affect VB cord-265978-i0fu8e0p 157 13 the the DT cord-265978-i0fu8e0p 157 14 detection detection NN cord-265978-i0fu8e0p 157 15 and and CC cord-265978-i0fu8e0p 157 16 quantification quantification NN cord-265978-i0fu8e0p 157 17 of of IN cord-265978-i0fu8e0p 157 18 BCoV BCoV NNP cord-265978-i0fu8e0p 157 19 RNA RNA NNP cord-265978-i0fu8e0p 157 20 . . . cord-265978-i0fu8e0p 158 1 Validation validation NN cord-265978-i0fu8e0p 158 2 of of IN cord-265978-i0fu8e0p 158 3 ' ' '' cord-265978-i0fu8e0p 158 4 in in IN cord-265978-i0fu8e0p 158 5 - - HYPH cord-265978-i0fu8e0p 158 6 house house NN cord-265978-i0fu8e0p 158 7 ' ' '' cord-265978-i0fu8e0p 158 8 real real JJ cord-265978-i0fu8e0p 158 9 - - HYPH cord-265978-i0fu8e0p 158 10 time time NN cord-265978-i0fu8e0p 158 11 PCR PCR NNP cord-265978-i0fu8e0p 158 12 assays assay NNS cord-265978-i0fu8e0p 158 13 is be VBZ cord-265978-i0fu8e0p 158 14 a a DT cord-265978-i0fu8e0p 158 15 crucial crucial JJ cord-265978-i0fu8e0p 158 16 aspect aspect NN cord-265978-i0fu8e0p 158 17 that that WDT cord-265978-i0fu8e0p 158 18 controls control VBZ cord-265978-i0fu8e0p 158 19 the the DT cord-265978-i0fu8e0p 158 20 applicability applicability NN cord-265978-i0fu8e0p 158 21 of of IN cord-265978-i0fu8e0p 158 22 these these DT cord-265978-i0fu8e0p 158 23 assays assay NNS cord-265978-i0fu8e0p 158 24 in in IN cord-265978-i0fu8e0p 158 25 clinical clinical JJ cord-265978-i0fu8e0p 158 26 and and CC cord-265978-i0fu8e0p 158 27 diagnostic diagnostic JJ cord-265978-i0fu8e0p 158 28 purposes purpose NNS cord-265978-i0fu8e0p 158 29 . . . cord-265978-i0fu8e0p 159 1 Four four CD cord-265978-i0fu8e0p 159 2 cardinal cardinal JJ cord-265978-i0fu8e0p 159 3 elements element NNS cord-265978-i0fu8e0p 159 4 of of IN cord-265978-i0fu8e0p 159 5 validation validation NN cord-265978-i0fu8e0p 159 6 were be VBD cord-265978-i0fu8e0p 159 7 proposed propose VBN cord-265978-i0fu8e0p 159 8 including include VBG cord-265978-i0fu8e0p 159 9 specificity specificity NN cord-265978-i0fu8e0p 159 10 , , , cord-265978-i0fu8e0p 159 11 sensitivity sensitivity NN cord-265978-i0fu8e0p 159 12 , , , cord-265978-i0fu8e0p 159 13 reproducibility reproducibility NN cord-265978-i0fu8e0p 159 14 and and CC cord-265978-i0fu8e0p 159 15 linearity linearity NN cord-265978-i0fu8e0p 159 16 [ [ -LRB- cord-265978-i0fu8e0p 159 17 27 27 CD cord-265978-i0fu8e0p 159 18 ] ] -RRB- cord-265978-i0fu8e0p 159 19 . . . cord-265978-i0fu8e0p 160 1 In in IN cord-265978-i0fu8e0p 160 2 our -PRON- PRP$ cord-265978-i0fu8e0p 160 3 assay assay NN cord-265978-i0fu8e0p 160 4 , , , cord-265978-i0fu8e0p 160 5 all all PDT cord-265978-i0fu8e0p 160 6 these these DT cord-265978-i0fu8e0p 160 7 parameters parameter NNS cord-265978-i0fu8e0p 160 8 were be VBD cord-265978-i0fu8e0p 160 9 considered consider VBN cord-265978-i0fu8e0p 160 10 for for IN cord-265978-i0fu8e0p 160 11 evaluation evaluation NN cord-265978-i0fu8e0p 160 12 . . . cord-265978-i0fu8e0p 161 1 The the DT cord-265978-i0fu8e0p 161 2 specificity specificity NN cord-265978-i0fu8e0p 161 3 of of IN cord-265978-i0fu8e0p 161 4 the the DT cord-265978-i0fu8e0p 161 5 reaction reaction NN cord-265978-i0fu8e0p 161 6 has have VBZ cord-265978-i0fu8e0p 161 7 been be VBN cord-265978-i0fu8e0p 161 8 proved prove VBN cord-265978-i0fu8e0p 161 9 by by IN cord-265978-i0fu8e0p 161 10 different different JJ cord-265978-i0fu8e0p 161 11 means mean NNS cord-265978-i0fu8e0p 161 12 including include VBG cord-265978-i0fu8e0p 161 13 ; ; : cord-265978-i0fu8e0p 161 14 a a LS cord-265978-i0fu8e0p 161 15 ) ) -RRB- cord-265978-i0fu8e0p 161 16 identification identification NN cord-265978-i0fu8e0p 161 17 of of IN cord-265978-i0fu8e0p 161 18 the the DT cord-265978-i0fu8e0p 161 19 amplificon amplificon NNP cord-265978-i0fu8e0p 161 20 as as IN cord-265978-i0fu8e0p 161 21 a a DT cord-265978-i0fu8e0p 161 22 distinct distinct JJ cord-265978-i0fu8e0p 161 23 band band NN cord-265978-i0fu8e0p 161 24 of of IN cord-265978-i0fu8e0p 161 25 the the DT cord-265978-i0fu8e0p 161 26 expected expect VBN cord-265978-i0fu8e0p 161 27 molecular molecular JJ cord-265978-i0fu8e0p 161 28 size size NN cord-265978-i0fu8e0p 161 29 by by IN cord-265978-i0fu8e0p 161 30 agarose agarose JJ cord-265978-i0fu8e0p 161 31 gel gel NN cord-265978-i0fu8e0p 161 32 electrophoresis electrophoresis NN cord-265978-i0fu8e0p 161 33 , , , cord-265978-i0fu8e0p 161 34 b b LS cord-265978-i0fu8e0p 161 35 ) ) -RRB- cord-265978-i0fu8e0p 161 36 generation generation NN cord-265978-i0fu8e0p 161 37 of of IN cord-265978-i0fu8e0p 161 38 a a DT cord-265978-i0fu8e0p 161 39 consistent consistent JJ cord-265978-i0fu8e0p 161 40 melt melt NN cord-265978-i0fu8e0p 161 41 peak peak NN cord-265978-i0fu8e0p 161 42 at at IN cord-265978-i0fu8e0p 161 43 78.35 78.35 CD cord-265978-i0fu8e0p 161 44 C c NN cord-265978-i0fu8e0p 161 45 AE AE NNP cord-265978-i0fu8e0p 161 46 0.26 0.26 CD cord-265978-i0fu8e0p 161 47 by by IN cord-265978-i0fu8e0p 161 48 melt melt NN cord-265978-i0fu8e0p 161 49 curve curve NN cord-265978-i0fu8e0p 161 50 analysis analysis NN cord-265978-i0fu8e0p 161 51 , , , cord-265978-i0fu8e0p 161 52 c c NNP cord-265978-i0fu8e0p 161 53 ) ) -RRB- cord-265978-i0fu8e0p 161 54 lack lack NN cord-265978-i0fu8e0p 161 55 of of IN cord-265978-i0fu8e0p 161 56 cross cross NN cord-265978-i0fu8e0p 161 57 reactivity reactivity NN cord-265978-i0fu8e0p 161 58 with with IN cord-265978-i0fu8e0p 161 59 other other JJ cord-265978-i0fu8e0p 161 60 bovine bovine JJ cord-265978-i0fu8e0p 161 61 viruses virus NNS cord-265978-i0fu8e0p 161 62 that that WDT cord-265978-i0fu8e0p 161 63 may may MD cord-265978-i0fu8e0p 161 64 be be VB cord-265978-i0fu8e0p 161 65 considered consider VBN cord-265978-i0fu8e0p 161 66 for for IN cord-265978-i0fu8e0p 161 67 differential differential JJ cord-265978-i0fu8e0p 161 68 diagnosis diagnosis NN cord-265978-i0fu8e0p 161 69 with with IN cord-265978-i0fu8e0p 161 70 BCoV BCoV NNP cord-265978-i0fu8e0p 161 71 , , , cord-265978-i0fu8e0p 161 72 d d LS cord-265978-i0fu8e0p 161 73 ) ) -RRB- cord-265978-i0fu8e0p 161 74 Lack lack NN cord-265978-i0fu8e0p 161 75 of of IN cord-265978-i0fu8e0p 161 76 cross cross NN cord-265978-i0fu8e0p 161 77 reactivity reactivity NN cord-265978-i0fu8e0p 161 78 with with IN cord-265978-i0fu8e0p 161 79 a a DT cord-265978-i0fu8e0p 161 80 representative representative JJ cord-265978-i0fu8e0p 161 81 coronavirus coronavirus NN cord-265978-i0fu8e0p 161 82 ( ( -LRB- cord-265978-i0fu8e0p 161 83 IBV IBV NNP cord-265978-i0fu8e0p 161 84 ) ) -RRB- cord-265978-i0fu8e0p 161 85 , , , cord-265978-i0fu8e0p 161 86 and and CC cord-265978-i0fu8e0p 161 87 e e LS cord-265978-i0fu8e0p 161 88 ) ) -RRB- cord-265978-i0fu8e0p 161 89 Absence absence NN cord-265978-i0fu8e0p 161 90 of of IN cord-265978-i0fu8e0p 161 91 regular regular JJ cord-265978-i0fu8e0p 161 92 amplification amplification NN cord-265978-i0fu8e0p 161 93 signals signal NNS cord-265978-i0fu8e0p 161 94 in in IN cord-265978-i0fu8e0p 161 95 different different JJ cord-265978-i0fu8e0p 161 96 types type NNS cord-265978-i0fu8e0p 161 97 of of IN cord-265978-i0fu8e0p 161 98 negative negative JJ cord-265978-i0fu8e0p 161 99 controls control NNS cord-265978-i0fu8e0p 161 100 ( ( -LRB- cord-265978-i0fu8e0p 161 101 water water NN cord-265978-i0fu8e0p 161 102 , , , cord-265978-i0fu8e0p 161 103 nasal nasal NN cord-265978-i0fu8e0p 161 104 / / SYM cord-265978-i0fu8e0p 161 105 fecal fecal JJ cord-265978-i0fu8e0p 161 106 suspensions suspension NNS cord-265978-i0fu8e0p 161 107 and and CC cord-265978-i0fu8e0p 161 108 some some DT cord-265978-i0fu8e0p 161 109 irrelevant irrelevant JJ cord-265978-i0fu8e0p 161 110 human human NN cord-265978-i0fu8e0p 161 111 and and CC cord-265978-i0fu8e0p 161 112 poultry poultry NN cord-265978-i0fu8e0p 161 113 viruses virus NNS cord-265978-i0fu8e0p 161 114 ) ) -RRB- cord-265978-i0fu8e0p 161 115 . . . cord-265978-i0fu8e0p 162 1 Although although IN cord-265978-i0fu8e0p 162 2 different different JJ cord-265978-i0fu8e0p 162 3 types type NNS cord-265978-i0fu8e0p 162 4 of of IN cord-265978-i0fu8e0p 162 5 group group NN cord-265978-i0fu8e0p 162 6 II II NNP cord-265978-i0fu8e0p 162 7 coronaviruses coronaviruse NNS cord-265978-i0fu8e0p 162 8 , , , cord-265978-i0fu8e0p 162 9 such such JJ cord-265978-i0fu8e0p 162 10 as as IN cord-265978-i0fu8e0p 162 11 HCV HCV NNP cord-265978-i0fu8e0p 162 12 - - HYPH cord-265978-i0fu8e0p 162 13 OC43 OC43 NNP cord-265978-i0fu8e0p 162 14 , , , cord-265978-i0fu8e0p 162 15 PHEV PHEV NNP cord-265978-i0fu8e0p 162 16 , , , cord-265978-i0fu8e0p 162 17 CRCoV crcov NN cord-265978-i0fu8e0p 162 18 , , , cord-265978-i0fu8e0p 162 19 HECoV hecov CD cord-265978-i0fu8e0p 162 20 , , , cord-265978-i0fu8e0p 162 21 were be VBD cord-265978-i0fu8e0p 162 22 not not RB cord-265978-i0fu8e0p 162 23 included include VBN cord-265978-i0fu8e0p 162 24 in in IN cord-265978-i0fu8e0p 162 25 the the DT cord-265978-i0fu8e0p 162 26 specificity specificity NN cord-265978-i0fu8e0p 162 27 evaluation evaluation NN cord-265978-i0fu8e0p 162 28 as as IN cord-265978-i0fu8e0p 162 29 a a DT cord-265978-i0fu8e0p 162 30 result result NN cord-265978-i0fu8e0p 162 31 of of IN cord-265978-i0fu8e0p 162 32 their -PRON- PRP$ cord-265978-i0fu8e0p 162 33 unavailability unavailability NN cord-265978-i0fu8e0p 162 34 during during IN cord-265978-i0fu8e0p 162 35 the the DT cord-265978-i0fu8e0p 162 36 assay assay NN cord-265978-i0fu8e0p 162 37 development development NN cord-265978-i0fu8e0p 162 38 , , , cord-265978-i0fu8e0p 162 39 it -PRON- PRP cord-265978-i0fu8e0p 162 40 is be VBZ cord-265978-i0fu8e0p 162 41 highly highly RB cord-265978-i0fu8e0p 162 42 expected expect VBN cord-265978-i0fu8e0p 162 43 that that IN cord-265978-i0fu8e0p 162 44 these these DT cord-265978-i0fu8e0p 162 45 viruses virus NNS cord-265978-i0fu8e0p 162 46 can can MD cord-265978-i0fu8e0p 162 47 generate generate VB cord-265978-i0fu8e0p 162 48 positive positive JJ cord-265978-i0fu8e0p 162 49 signals signal NNS cord-265978-i0fu8e0p 162 50 depending depend VBG cord-265978-i0fu8e0p 162 51 on on IN cord-265978-i0fu8e0p 162 52 their -PRON- PRP$ cord-265978-i0fu8e0p 162 53 sequence sequence NN cord-265978-i0fu8e0p 162 54 homology homology NN cord-265978-i0fu8e0p 162 55 with with IN cord-265978-i0fu8e0p 162 56 BCoV BCoV NNP cord-265978-i0fu8e0p 162 57 target target NN cord-265978-i0fu8e0p 162 58 region region NN cord-265978-i0fu8e0p 162 59 . . . cord-265978-i0fu8e0p 163 1 The the DT cord-265978-i0fu8e0p 163 2 detection detection NN cord-265978-i0fu8e0p 163 3 limit limit NN cord-265978-i0fu8e0p 163 4 of of IN cord-265978-i0fu8e0p 163 5 the the DT cord-265978-i0fu8e0p 163 6 assay assay NN cord-265978-i0fu8e0p 163 7 was be VBD cord-265978-i0fu8e0p 163 8 evaluated evaluate VBN cord-265978-i0fu8e0p 163 9 by by IN cord-265978-i0fu8e0p 163 10 both both DT cord-265978-i0fu8e0p 163 11 cDNA cdna NN cord-265978-i0fu8e0p 163 12 copy copy NN cord-265978-i0fu8e0p 163 13 numbers number NNS cord-265978-i0fu8e0p 163 14 and and CC cord-265978-i0fu8e0p 163 15 TCID TCID NNP cord-265978-i0fu8e0p 163 16 50 50 CD cord-265978-i0fu8e0p 163 17 . . . cord-265978-i0fu8e0p 164 1 Ten ten CD cord-265978-i0fu8e0p 164 2 - - HYPH cord-265978-i0fu8e0p 164 3 fold fold JJ cord-265978-i0fu8e0p 164 4 serial serial JJ cord-265978-i0fu8e0p 164 5 dilutions dilution NNS cord-265978-i0fu8e0p 164 6 of of IN cord-265978-i0fu8e0p 164 7 the the DT cord-265978-i0fu8e0p 164 8 DNA dna NN cord-265978-i0fu8e0p 164 9 standard standard NN cord-265978-i0fu8e0p 164 10 as as RB cord-265978-i0fu8e0p 164 11 well well RB cord-265978-i0fu8e0p 164 12 as as IN cord-265978-i0fu8e0p 164 13 the the DT cord-265978-i0fu8e0p 164 14 virus virus NN cord-265978-i0fu8e0p 164 15 stock stock NN cord-265978-i0fu8e0p 164 16 of of IN cord-265978-i0fu8e0p 164 17 known know VBN cord-265978-i0fu8e0p 164 18 titer titer NN cord-265978-i0fu8e0p 164 19 ( ( -LRB- cord-265978-i0fu8e0p 164 20 10 10 CD cord-265978-i0fu8e0p 164 21 5 5 CD cord-265978-i0fu8e0p 164 22 TCID TCID NNP cord-265978-i0fu8e0p 164 23 50 50 CD cord-265978-i0fu8e0p 165 1 /ml /ml NFP cord-265978-i0fu8e0p 165 2 ) ) -RRB- cord-265978-i0fu8e0p 165 3 were be VBD cord-265978-i0fu8e0p 165 4 used use VBN cord-265978-i0fu8e0p 165 5 to to TO cord-265978-i0fu8e0p 165 6 determine determine VB cord-265978-i0fu8e0p 165 7 the the DT cord-265978-i0fu8e0p 165 8 sensitivity sensitivity NN cord-265978-i0fu8e0p 165 9 and and CC cord-265978-i0fu8e0p 165 10 linearity linearity NN cord-265978-i0fu8e0p 165 11 of of IN cord-265978-i0fu8e0p 165 12 the the DT cord-265978-i0fu8e0p 165 13 assay assay NN cord-265978-i0fu8e0p 165 14 as as RB cord-265978-i0fu8e0p 165 15 well well RB cord-265978-i0fu8e0p 165 16 as as IN cord-265978-i0fu8e0p 165 17 to to TO cord-265978-i0fu8e0p 165 18 generate generate VB cord-265978-i0fu8e0p 165 19 standard standard JJ cord-265978-i0fu8e0p 165 20 curves curve NNS cord-265978-i0fu8e0p 165 21 applicable applicable JJ cord-265978-i0fu8e0p 165 22 for for IN cord-265978-i0fu8e0p 165 23 absolute absolute JJ cord-265978-i0fu8e0p 165 24 quantification quantification NN cord-265978-i0fu8e0p 165 25 of of IN cord-265978-i0fu8e0p 165 26 BCoV BCoV NNP cord-265978-i0fu8e0p 165 27 in in IN cord-265978-i0fu8e0p 165 28 clinical clinical JJ cord-265978-i0fu8e0p 165 29 samples sample NNS cord-265978-i0fu8e0p 165 30 . . . cord-265978-i0fu8e0p 166 1 The the DT cord-265978-i0fu8e0p 166 2 assay assay NN cord-265978-i0fu8e0p 166 3 was be VBD cord-265978-i0fu8e0p 166 4 able able JJ cord-265978-i0fu8e0p 166 5 to to TO cord-265978-i0fu8e0p 166 6 detect detect VB cord-265978-i0fu8e0p 166 7 10-fold 10-fold JJ cord-265978-i0fu8e0p 166 8 differences difference NNS cord-265978-i0fu8e0p 166 9 of of IN cord-265978-i0fu8e0p 166 10 both both DT cord-265978-i0fu8e0p 166 11 targets target NNS cord-265978-i0fu8e0p 166 12 over over IN cord-265978-i0fu8e0p 166 13 6e8 6e8 CD cord-265978-i0fu8e0p 166 14 orders order NNS cord-265978-i0fu8e0p 166 15 of of IN cord-265978-i0fu8e0p 166 16 magnitude magnitude NN cord-265978-i0fu8e0p 166 17 . . . cord-265978-i0fu8e0p 167 1 A a DT cord-265978-i0fu8e0p 167 2 minimum minimum NN cord-265978-i0fu8e0p 167 3 of of IN cord-265978-i0fu8e0p 167 4 10 10 CD cord-265978-i0fu8e0p 167 5 3 3 CD cord-265978-i0fu8e0p 167 6 cDNA cdna NN cord-265978-i0fu8e0p 167 7 copies copy NNS cord-265978-i0fu8e0p 167 8 of of IN cord-265978-i0fu8e0p 167 9 the the DT cord-265978-i0fu8e0p 167 10 plasmid plasmid NN cord-265978-i0fu8e0p 167 11 standard standard NN cord-265978-i0fu8e0p 167 12 and and CC cord-265978-i0fu8e0p 167 13 1.17 1.17 CD cord-265978-i0fu8e0p 167 14 Â â CD cord-265978-i0fu8e0p 167 15 10 10 CD cord-265978-i0fu8e0p 167 16 À3 à3 CD cord-265978-i0fu8e0p 167 17 TCID TCID NNP cord-265978-i0fu8e0p 167 18 50 50 CD cord-265978-i0fu8e0p 167 19 of of IN cord-265978-i0fu8e0p 167 20 the the DT cord-265978-i0fu8e0p 167 21 cell cell NN cord-265978-i0fu8e0p 167 22 - - HYPH cord-265978-i0fu8e0p 167 23 culture culture NN cord-265978-i0fu8e0p 167 24 grown grow VBN cord-265978-i0fu8e0p 167 25 virus virus NN cord-265978-i0fu8e0p 167 26 per per IN cord-265978-i0fu8e0p 167 27 reaction reaction NN cord-265978-i0fu8e0p 167 28 was be VBD cord-265978-i0fu8e0p 167 29 recognized recognize VBN cord-265978-i0fu8e0p 167 30 ( ( -LRB- cord-265978-i0fu8e0p 167 31 Fig Fig NNP cord-265978-i0fu8e0p 167 32 . . . cord-265978-i0fu8e0p 167 33 1 1 CD cord-265978-i0fu8e0p 167 34 ) ) -RRB- cord-265978-i0fu8e0p 167 35 . . . cord-265978-i0fu8e0p 168 1 In in IN cord-265978-i0fu8e0p 168 2 addition addition NN cord-265978-i0fu8e0p 168 3 , , , cord-265978-i0fu8e0p 168 4 the the DT cord-265978-i0fu8e0p 168 5 assay assay NN cord-265978-i0fu8e0p 168 6 showed show VBD cord-265978-i0fu8e0p 168 7 to to TO cord-265978-i0fu8e0p 168 8 be be VB cord-265978-i0fu8e0p 168 9 highly highly RB cord-265978-i0fu8e0p 168 10 reproducible reproducible JJ cord-265978-i0fu8e0p 168 11 with with IN cord-265978-i0fu8e0p 168 12 very very RB cord-265978-i0fu8e0p 168 13 limited limited JJ cord-265978-i0fu8e0p 168 14 intra intra NN cord-265978-i0fu8e0p 168 15 - - : cord-265978-i0fu8e0p 168 16 and and CC cord-265978-i0fu8e0p 168 17 inter inter JJ cord-265978-i0fu8e0p 168 18 - - JJ cord-265978-i0fu8e0p 168 19 assay assay JJ cord-265978-i0fu8e0p 168 20 variations variation NNS cord-265978-i0fu8e0p 168 21 . . . cord-265978-i0fu8e0p 169 1 The the DT cord-265978-i0fu8e0p 169 2 calculated calculate VBN cord-265978-i0fu8e0p 169 3 CV cv NN cord-265978-i0fu8e0p 169 4 values value NNS cord-265978-i0fu8e0p 169 5 for for IN cord-265978-i0fu8e0p 169 6 both both DT cord-265978-i0fu8e0p 169 7 parameters parameter NNS cord-265978-i0fu8e0p 169 8 did do VBD cord-265978-i0fu8e0p 169 9 not not RB cord-265978-i0fu8e0p 169 10 rise rise VB cord-265978-i0fu8e0p 169 11 over over IN cord-265978-i0fu8e0p 169 12 2.5 2.5 CD cord-265978-i0fu8e0p 169 13 % % NN cord-265978-i0fu8e0p 169 14 . . . cord-265978-i0fu8e0p 170 1 A a DT cord-265978-i0fu8e0p 170 2 mean mean JJ cord-265978-i0fu8e0p 170 3 C.V C.V NNP cord-265978-i0fu8e0p 170 4 that that WDT cord-265978-i0fu8e0p 170 5 is be VBZ cord-265978-i0fu8e0p 170 6 lower low JJR cord-265978-i0fu8e0p 170 7 than than IN cord-265978-i0fu8e0p 170 8 5 5 CD cord-265978-i0fu8e0p 170 9 % % NN cord-265978-i0fu8e0p 170 10 is be VBZ cord-265978-i0fu8e0p 170 11 acceptable acceptable JJ cord-265978-i0fu8e0p 170 12 and and CC cord-265978-i0fu8e0p 170 13 indicates indicate VBZ cord-265978-i0fu8e0p 170 14 that that IN cord-265978-i0fu8e0p 170 15 the the DT cord-265978-i0fu8e0p 170 16 assay assay NN cord-265978-i0fu8e0p 170 17 can can MD cord-265978-i0fu8e0p 170 18 generate generate VB cord-265978-i0fu8e0p 170 19 reproducible reproducible JJ cord-265978-i0fu8e0p 170 20 results result NNS cord-265978-i0fu8e0p 170 21 [ [ -LRB- cord-265978-i0fu8e0p 170 22 28 28 CD cord-265978-i0fu8e0p 170 23 ] ] -RRB- cord-265978-i0fu8e0p 170 24 . . . cord-265978-i0fu8e0p 171 1 The the DT cord-265978-i0fu8e0p 171 2 diagnostic diagnostic JJ cord-265978-i0fu8e0p 171 3 applicability applicability NN cord-265978-i0fu8e0p 171 4 of of IN cord-265978-i0fu8e0p 171 5 the the DT cord-265978-i0fu8e0p 171 6 developed developed JJ cord-265978-i0fu8e0p 171 7 assay assay NN cord-265978-i0fu8e0p 171 8 was be VBD cord-265978-i0fu8e0p 171 9 established establish VBN cord-265978-i0fu8e0p 171 10 by by IN cord-265978-i0fu8e0p 171 11 testing test VBG cord-265978-i0fu8e0p 171 12 this this DT cord-265978-i0fu8e0p 171 13 method method NN cord-265978-i0fu8e0p 171 14 on on IN cord-265978-i0fu8e0p 171 15 clinical clinical JJ cord-265978-i0fu8e0p 171 16 samples sample NNS cord-265978-i0fu8e0p 171 17 and and CC cord-265978-i0fu8e0p 171 18 comparing compare VBG cord-265978-i0fu8e0p 171 19 its -PRON- PRP$ cord-265978-i0fu8e0p 171 20 results result NNS cord-265978-i0fu8e0p 171 21 with with IN cord-265978-i0fu8e0p 171 22 the the DT cord-265978-i0fu8e0p 171 23 conventional conventional JJ cord-265978-i0fu8e0p 171 24 RT RT NNP cord-265978-i0fu8e0p 171 25 - - HYPH cord-265978-i0fu8e0p 171 26 PCR PCR NNP cord-265978-i0fu8e0p 171 27 assay assay NN cord-265978-i0fu8e0p 171 28 . . . cord-265978-i0fu8e0p 172 1 Out out IN cord-265978-i0fu8e0p 172 2 of of IN cord-265978-i0fu8e0p 172 3 34 34 CD cord-265978-i0fu8e0p 172 4 positive positive JJ cord-265978-i0fu8e0p 172 5 samples sample NNS cord-265978-i0fu8e0p 172 6 by by IN cord-265978-i0fu8e0p 172 7 real real JJ cord-265978-i0fu8e0p 172 8 - - HYPH cord-265978-i0fu8e0p 172 9 time time NN cord-265978-i0fu8e0p 172 10 RT RT NNP cord-265978-i0fu8e0p 172 11 - - HYPH cord-265978-i0fu8e0p 172 12 PCR PCR NNP cord-265978-i0fu8e0p 172 13 ( ( -LRB- cord-265978-i0fu8e0p 172 14 20 20 CD cord-265978-i0fu8e0p 172 15 fecal fecal JJ cord-265978-i0fu8e0p 172 16 and and CC cord-265978-i0fu8e0p 172 17 14 14 CD cord-265978-i0fu8e0p 172 18 nasal nasal NN cord-265978-i0fu8e0p 172 19 ) ) -RRB- cord-265978-i0fu8e0p 172 20 , , , cord-265978-i0fu8e0p 172 21 five five CD cord-265978-i0fu8e0p 172 22 samples sample NNS cord-265978-i0fu8e0p 172 23 ( ( -LRB- cord-265978-i0fu8e0p 172 24 three three CD cord-265978-i0fu8e0p 172 25 fecal fecal JJ cord-265978-i0fu8e0p 172 26 and and CC cord-265978-i0fu8e0p 172 27 two two CD cord-265978-i0fu8e0p 172 28 nasal nasal NN cord-265978-i0fu8e0p 172 29 ) ) -RRB- cord-265978-i0fu8e0p 172 30 were be VBD cord-265978-i0fu8e0p 172 31 diagnosed diagnose VBN cord-265978-i0fu8e0p 172 32 negative negative JJ cord-265978-i0fu8e0p 172 33 by by IN cord-265978-i0fu8e0p 172 34 the the DT cord-265978-i0fu8e0p 172 35 gelbased gelbased JJ cord-265978-i0fu8e0p 172 36 assay assay NN cord-265978-i0fu8e0p 172 37 . . . cord-265978-i0fu8e0p 173 1 As as IN cord-265978-i0fu8e0p 173 2 expected expect VBN cord-265978-i0fu8e0p 173 3 , , , cord-265978-i0fu8e0p 173 4 these these DT cord-265978-i0fu8e0p 173 5 samples sample NNS cord-265978-i0fu8e0p 173 6 contained contain VBD cord-265978-i0fu8e0p 173 7 the the DT cord-265978-i0fu8e0p 173 8 least least JJS cord-265978-i0fu8e0p 173 9 virus virus NN cord-265978-i0fu8e0p 173 10 copy copy NN cord-265978-i0fu8e0p 173 11 number number NN cord-265978-i0fu8e0p 173 12 among among IN cord-265978-i0fu8e0p 173 13 all all DT cord-265978-i0fu8e0p 173 14 positive positive JJ cord-265978-i0fu8e0p 173 15 samples sample NNS cord-265978-i0fu8e0p 173 16 . . . cord-265978-i0fu8e0p 174 1 On on IN cord-265978-i0fu8e0p 174 2 the the DT cord-265978-i0fu8e0p 174 3 other other JJ cord-265978-i0fu8e0p 174 4 hand hand NN cord-265978-i0fu8e0p 174 5 , , , cord-265978-i0fu8e0p 174 6 all all PDT cord-265978-i0fu8e0p 174 7 the the DT cord-265978-i0fu8e0p 174 8 negative negative JJ cord-265978-i0fu8e0p 174 9 samples sample NNS cord-265978-i0fu8e0p 174 10 identified identify VBN cord-265978-i0fu8e0p 174 11 by by IN cord-265978-i0fu8e0p 174 12 the the DT cord-265978-i0fu8e0p 174 13 real real JJ cord-265978-i0fu8e0p 174 14 - - HYPH cord-265978-i0fu8e0p 174 15 time time NN cord-265978-i0fu8e0p 174 16 assay assay NN cord-265978-i0fu8e0p 174 17 were be VBD cord-265978-i0fu8e0p 174 18 also also RB cord-265978-i0fu8e0p 174 19 negative negative JJ cord-265978-i0fu8e0p 174 20 by by IN cord-265978-i0fu8e0p 174 21 the the DT cord-265978-i0fu8e0p 174 22 conventional conventional JJ cord-265978-i0fu8e0p 174 23 method method NN cord-265978-i0fu8e0p 174 24 . . . cord-265978-i0fu8e0p 175 1 This this DT cord-265978-i0fu8e0p 175 2 confirms confirm VBZ cord-265978-i0fu8e0p 175 3 the the DT cord-265978-i0fu8e0p 175 4 higher high JJR cord-265978-i0fu8e0p 175 5 sensitivity sensitivity NN cord-265978-i0fu8e0p 175 6 of of IN cord-265978-i0fu8e0p 175 7 the the DT cord-265978-i0fu8e0p 175 8 developed developed JJ cord-265978-i0fu8e0p 175 9 assay assay NN cord-265978-i0fu8e0p 175 10 and and CC cord-265978-i0fu8e0p 175 11 its -PRON- PRP$ cord-265978-i0fu8e0p 175 12 reliability reliability NN cord-265978-i0fu8e0p 175 13 for for IN cord-265978-i0fu8e0p 175 14 generation generation NN cord-265978-i0fu8e0p 175 15 of of IN cord-265978-i0fu8e0p 175 16 an an DT cord-265978-i0fu8e0p 175 17 appropriate appropriate JJ cord-265978-i0fu8e0p 175 18 epidemiological epidemiological JJ cord-265978-i0fu8e0p 175 19 data datum NNS cord-265978-i0fu8e0p 175 20 . . . cord-265978-i0fu8e0p 176 1 Moreover moreover RB cord-265978-i0fu8e0p 176 2 , , , cord-265978-i0fu8e0p 176 3 the the DT cord-265978-i0fu8e0p 176 4 assay assay NN cord-265978-i0fu8e0p 176 5 proved prove VBD cord-265978-i0fu8e0p 176 6 its -PRON- PRP$ cord-265978-i0fu8e0p 176 7 ability ability NN cord-265978-i0fu8e0p 176 8 to to TO cord-265978-i0fu8e0p 176 9 detect detect VB cord-265978-i0fu8e0p 176 10 BCoV BCoV NNP cord-265978-i0fu8e0p 176 11 over over IN cord-265978-i0fu8e0p 176 12 a a DT cord-265978-i0fu8e0p 176 13 wide wide JJ cord-265978-i0fu8e0p 176 14 dynamic dynamic JJ cord-265978-i0fu8e0p 176 15 range range NN cord-265978-i0fu8e0p 176 16 ( ( -LRB- cord-265978-i0fu8e0p 176 17 5.5 5.5 CD cord-265978-i0fu8e0p 176 18 logs log NNS cord-265978-i0fu8e0p 176 19 of of IN cord-265978-i0fu8e0p 176 20 magnitude magnitude NN cord-265978-i0fu8e0p 176 21 for for IN cord-265978-i0fu8e0p 176 22 nasal nasal NN cord-265978-i0fu8e0p 176 23 samples sample NNS cord-265978-i0fu8e0p 176 24 and and CC cord-265978-i0fu8e0p 176 25 4 4 CD cord-265978-i0fu8e0p 176 26 logs log NNS cord-265978-i0fu8e0p 176 27 for for IN cord-265978-i0fu8e0p 176 28 fecal fecal JJ cord-265978-i0fu8e0p 176 29 samples sample NNS cord-265978-i0fu8e0p 176 30 ) ) -RRB- cord-265978-i0fu8e0p 176 31 . . . cord-265978-i0fu8e0p 177 1 The the DT cord-265978-i0fu8e0p 177 2 limited limited JJ cord-265978-i0fu8e0p 177 3 dynamic dynamic JJ cord-265978-i0fu8e0p 177 4 range range NN cord-265978-i0fu8e0p 177 5 of of IN cord-265978-i0fu8e0p 177 6 fecal fecal JJ cord-265978-i0fu8e0p 177 7 samples sample NNS cord-265978-i0fu8e0p 177 8 as as IN cord-265978-i0fu8e0p 177 9 compared compare VBN cord-265978-i0fu8e0p 177 10 to to IN cord-265978-i0fu8e0p 177 11 the the DT cord-265978-i0fu8e0p 177 12 nasal nasal NN cord-265978-i0fu8e0p 177 13 samples sample NNS cord-265978-i0fu8e0p 177 14 may may MD cord-265978-i0fu8e0p 177 15 be be VB cord-265978-i0fu8e0p 177 16 explained explain VBN cord-265978-i0fu8e0p 177 17 by by IN cord-265978-i0fu8e0p 177 18 the the DT cord-265978-i0fu8e0p 177 19 higher high JJR cord-265978-i0fu8e0p 177 20 background background NN cord-265978-i0fu8e0p 177 21 of of IN cord-265978-i0fu8e0p 177 22 inhibitory inhibitory JJ cord-265978-i0fu8e0p 177 23 substances substance NNS cord-265978-i0fu8e0p 177 24 in in IN cord-265978-i0fu8e0p 177 25 fecal fecal JJ cord-265978-i0fu8e0p 177 26 material material NN cord-265978-i0fu8e0p 177 27 . . . cord-265978-i0fu8e0p 178 1 Recently recently RB cord-265978-i0fu8e0p 178 2 , , , cord-265978-i0fu8e0p 178 3 three three CD cord-265978-i0fu8e0p 178 4 reports report NNS cord-265978-i0fu8e0p 178 5 described describe VBD cord-265978-i0fu8e0p 178 6 the the DT cord-265978-i0fu8e0p 178 7 process process NN cord-265978-i0fu8e0p 178 8 of of IN cord-265978-i0fu8e0p 178 9 establishment establishment NN cord-265978-i0fu8e0p 178 10 of of IN cord-265978-i0fu8e0p 178 11 real real JJ cord-265978-i0fu8e0p 178 12 - - HYPH cord-265978-i0fu8e0p 178 13 time time NN cord-265978-i0fu8e0p 178 14 RT rt NN cord-265978-i0fu8e0p 178 15 - - HYPH cord-265978-i0fu8e0p 178 16 PCR PCR NNP cord-265978-i0fu8e0p 178 17 assays assay NNS cord-265978-i0fu8e0p 178 18 for for IN cord-265978-i0fu8e0p 178 19 detection detection NN cord-265978-i0fu8e0p 178 20 of of IN cord-265978-i0fu8e0p 178 21 BCoV BCoV NNP cord-265978-i0fu8e0p 178 22 either either CC cord-265978-i0fu8e0p 178 23 solely solely RB cord-265978-i0fu8e0p 178 24 or or CC cord-265978-i0fu8e0p 178 25 in in IN cord-265978-i0fu8e0p 178 26 a a DT cord-265978-i0fu8e0p 178 27 multiplex multiplex NN cord-265978-i0fu8e0p 178 28 set set NN cord-265978-i0fu8e0p 178 29 [ [ -LRB- cord-265978-i0fu8e0p 178 30 13 13 CD cord-265978-i0fu8e0p 178 31 , , , cord-265978-i0fu8e0p 178 32 29 29 CD cord-265978-i0fu8e0p 178 33 , , , cord-265978-i0fu8e0p 178 34 30 30 CD cord-265978-i0fu8e0p 178 35 ] ] -RRB- cord-265978-i0fu8e0p 178 36 . . . cord-265978-i0fu8e0p 179 1 However however RB cord-265978-i0fu8e0p 179 2 , , , cord-265978-i0fu8e0p 179 3 none none NN cord-265978-i0fu8e0p 179 4 of of IN cord-265978-i0fu8e0p 179 5 these these DT cord-265978-i0fu8e0p 179 6 systems system NNS cord-265978-i0fu8e0p 179 7 utilized utilize VBD cord-265978-i0fu8e0p 179 8 the the DT cord-265978-i0fu8e0p 179 9 SYBR SYBR NNP cord-265978-i0fu8e0p 179 10 Green Green NNP cord-265978-i0fu8e0p 179 11 I -PRON- PRP cord-265978-i0fu8e0p 179 12 chemistry chemistry VBP cord-265978-i0fu8e0p 179 13 for for IN cord-265978-i0fu8e0p 179 14 specific specific JJ cord-265978-i0fu8e0p 179 15 detection detection NN cord-265978-i0fu8e0p 179 16 and and CC cord-265978-i0fu8e0p 179 17 quantification quantification NN cord-265978-i0fu8e0p 179 18 of of IN cord-265978-i0fu8e0p 179 19 BCoV. bcov. CD cord-265978-i0fu8e0p 180 1 The the DT cord-265978-i0fu8e0p 180 2 main main JJ cord-265978-i0fu8e0p 180 3 advantages advantage NNS cord-265978-i0fu8e0p 180 4 of of IN cord-265978-i0fu8e0p 180 5 SYBR SYBR NNP cord-265978-i0fu8e0p 180 6 Green Green NNP cord-265978-i0fu8e0p 180 7 I -PRON- PRP cord-265978-i0fu8e0p 180 8 over over IN cord-265978-i0fu8e0p 180 9 other other JJ cord-265978-i0fu8e0p 180 10 real real JJ cord-265978-i0fu8e0p 180 11 - - HYPH cord-265978-i0fu8e0p 180 12 time time NN cord-265978-i0fu8e0p 180 13 PCR PCR NNP cord-265978-i0fu8e0p 180 14 detection detection NN cord-265978-i0fu8e0p 180 15 formats format NNS cord-265978-i0fu8e0p 180 16 are be VBP cord-265978-i0fu8e0p 180 17 ; ; : cord-265978-i0fu8e0p 180 18 a a LS cord-265978-i0fu8e0p 180 19 ) ) -RRB- cord-265978-i0fu8e0p 180 20 it -PRON- PRP cord-265978-i0fu8e0p 180 21 is be VBZ cord-265978-i0fu8e0p 180 22 a a DT cord-265978-i0fu8e0p 180 23 low low JJ cord-265978-i0fu8e0p 180 24 - - HYPH cord-265978-i0fu8e0p 180 25 cost cost NN cord-265978-i0fu8e0p 180 26 fluorochrome fluorochrome NN cord-265978-i0fu8e0p 180 27 , , , cord-265978-i0fu8e0p 181 1 b b LS cord-265978-i0fu8e0p 181 2 ) ) -RRB- cord-265978-i0fu8e0p 181 3 it -PRON- PRP cord-265978-i0fu8e0p 181 4 is be VBZ cord-265978-i0fu8e0p 181 5 a a DT cord-265978-i0fu8e0p 181 6 simpler simple JJR cord-265978-i0fu8e0p 181 7 approach approach NN cord-265978-i0fu8e0p 181 8 especially especially RB cord-265978-i0fu8e0p 181 9 for for IN cord-265978-i0fu8e0p 181 10 primer primer NN cord-265978-i0fu8e0p 181 11 design design NN cord-265978-i0fu8e0p 181 12 and and CC cord-265978-i0fu8e0p 181 13 optimization optimization NN cord-265978-i0fu8e0p 181 14 procedures procedure NNS cord-265978-i0fu8e0p 181 15 [ [ -LRB- cord-265978-i0fu8e0p 181 16 31 31 CD cord-265978-i0fu8e0p 181 17 ] ] -RRB- cord-265978-i0fu8e0p 181 18 , , , cord-265978-i0fu8e0p 181 19 and and CC cord-265978-i0fu8e0p 181 20 c c LS cord-265978-i0fu8e0p 181 21 ) ) -RRB- cord-265978-i0fu8e0p 181 22 the the DT cord-265978-i0fu8e0p 181 23 artifacts artifact NNS cord-265978-i0fu8e0p 181 24 commonly commonly RB cord-265978-i0fu8e0p 181 25 observed observe VBD cord-265978-i0fu8e0p 181 26 in in IN cord-265978-i0fu8e0p 181 27 specific specific JJ cord-265978-i0fu8e0p 181 28 probes probe NNS cord-265978-i0fu8e0p 181 29 , , , cord-265978-i0fu8e0p 181 30 particularly particularly RB cord-265978-i0fu8e0p 181 31 at at IN cord-265978-i0fu8e0p 181 32 amplification amplification NN cord-265978-i0fu8e0p 181 33 cycles cycle NNS cord-265978-i0fu8e0p 181 34 beyond beyond IN cord-265978-i0fu8e0p 181 35 the the DT cord-265978-i0fu8e0p 181 36 30th 30th NN cord-265978-i0fu8e0p 181 37 , , , cord-265978-i0fu8e0p 181 38 are be VBP cord-265978-i0fu8e0p 181 39 minimal minimal JJ cord-265978-i0fu8e0p 181 40 and and CC cord-265978-i0fu8e0p 181 41 can can MD cord-265978-i0fu8e0p 181 42 be be VB cord-265978-i0fu8e0p 181 43 ruled rule VBN cord-265978-i0fu8e0p 181 44 out out RP cord-265978-i0fu8e0p 181 45 by by IN cord-265978-i0fu8e0p 181 46 melt melt NN cord-265978-i0fu8e0p 181 47 curve curve NN cord-265978-i0fu8e0p 181 48 analysis analysis NN cord-265978-i0fu8e0p 181 49 [ [ -LRB- cord-265978-i0fu8e0p 181 50 32 32 CD cord-265978-i0fu8e0p 181 51 ] ] -RRB- cord-265978-i0fu8e0p 181 52 . . . cord-265978-i0fu8e0p 182 1 In in IN cord-265978-i0fu8e0p 182 2 conclusion conclusion NN cord-265978-i0fu8e0p 182 3 , , , cord-265978-i0fu8e0p 182 4 the the DT cord-265978-i0fu8e0p 182 5 real real JJ cord-265978-i0fu8e0p 182 6 - - HYPH cord-265978-i0fu8e0p 182 7 time time NN cord-265978-i0fu8e0p 182 8 PCR PCR NNP cord-265978-i0fu8e0p 182 9 described describe VBN cord-265978-i0fu8e0p 182 10 here here RB cord-265978-i0fu8e0p 182 11 is be VBZ cord-265978-i0fu8e0p 182 12 a a DT cord-265978-i0fu8e0p 182 13 sensitive sensitive JJ cord-265978-i0fu8e0p 182 14 , , , cord-265978-i0fu8e0p 182 15 simple simple JJ cord-265978-i0fu8e0p 182 16 and and CC cord-265978-i0fu8e0p 182 17 cost cost NN cord-265978-i0fu8e0p 182 18 - - HYPH cord-265978-i0fu8e0p 182 19 effective effective JJ cord-265978-i0fu8e0p 182 20 method method NN cord-265978-i0fu8e0p 182 21 that that WDT cord-265978-i0fu8e0p 182 22 can can MD cord-265978-i0fu8e0p 182 23 be be VB cord-265978-i0fu8e0p 182 24 applied apply VBN cord-265978-i0fu8e0p 182 25 easily easily RB cord-265978-i0fu8e0p 182 26 for for IN cord-265978-i0fu8e0p 182 27 laboratory laboratory NN cord-265978-i0fu8e0p 182 28 diagnosis diagnosis NN cord-265978-i0fu8e0p 182 29 of of IN cord-265978-i0fu8e0p 182 30 BCoV BCoV NNP cord-265978-i0fu8e0p 182 31 infections infection NNS cord-265978-i0fu8e0p 182 32 . . . cord-265978-i0fu8e0p 183 1 The the DT cord-265978-i0fu8e0p 183 2 method method NN cord-265978-i0fu8e0p 183 3 is be VBZ cord-265978-i0fu8e0p 183 4 convenient convenient JJ cord-265978-i0fu8e0p 183 5 for for IN cord-265978-i0fu8e0p 183 6 early early JJ cord-265978-i0fu8e0p 183 7 differential differential JJ cord-265978-i0fu8e0p 183 8 diagnosis diagnosis NN cord-265978-i0fu8e0p 183 9 of of IN cord-265978-i0fu8e0p 183 10 calf calf NN cord-265978-i0fu8e0p 183 11 diarrhea diarrhea NN cord-265978-i0fu8e0p 183 12 and and CC cord-265978-i0fu8e0p 183 13 bovine bovine JJ cord-265978-i0fu8e0p 183 14 respiratory respiratory JJ cord-265978-i0fu8e0p 183 15 disease disease NN cord-265978-i0fu8e0p 183 16 syndromes syndrome NNS cord-265978-i0fu8e0p 183 17 . . . cord-265978-i0fu8e0p 184 1 In in IN cord-265978-i0fu8e0p 184 2 addition addition NN cord-265978-i0fu8e0p 184 3 , , , cord-265978-i0fu8e0p 184 4 the the DT cord-265978-i0fu8e0p 184 5 rapid rapid JJ cord-265978-i0fu8e0p 184 6 results result NNS cord-265978-i0fu8e0p 184 7 obtained obtain VBN cord-265978-i0fu8e0p 184 8 by by IN cord-265978-i0fu8e0p 184 9 this this DT cord-265978-i0fu8e0p 184 10 method method NN cord-265978-i0fu8e0p 184 11 are be VBP cord-265978-i0fu8e0p 184 12 crucial crucial JJ cord-265978-i0fu8e0p 184 13 for for IN cord-265978-i0fu8e0p 184 14 proper proper JJ cord-265978-i0fu8e0p 184 15 herd herd NN cord-265978-i0fu8e0p 184 16 management management NN cord-265978-i0fu8e0p 184 17 and and CC cord-265978-i0fu8e0p 184 18 prevention prevention NN cord-265978-i0fu8e0p 184 19 of of IN cord-265978-i0fu8e0p 184 20 disease disease NN cord-265978-i0fu8e0p 184 21 spread spread VBD cord-265978-i0fu8e0p 184 22 . . . cord-265978-i0fu8e0p 185 1 Moreover moreover RB cord-265978-i0fu8e0p 185 2 , , , cord-265978-i0fu8e0p 185 3 this this DT cord-265978-i0fu8e0p 185 4 assay assay NN cord-265978-i0fu8e0p 185 5 can can MD cord-265978-i0fu8e0p 185 6 be be VB cord-265978-i0fu8e0p 185 7 considered consider VBN cord-265978-i0fu8e0p 185 8 as as IN cord-265978-i0fu8e0p 185 9 a a DT cord-265978-i0fu8e0p 185 10 suitable suitable JJ cord-265978-i0fu8e0p 185 11 alternative alternative NN cord-265978-i0fu8e0p 185 12 for for IN cord-265978-i0fu8e0p 185 13 the the DT cord-265978-i0fu8e0p 185 14 regular regular JJ cord-265978-i0fu8e0p 185 15 methods method NNS cord-265978-i0fu8e0p 185 16 used use VBN cord-265978-i0fu8e0p 185 17 for for IN cord-265978-i0fu8e0p 185 18 studying study VBG cord-265978-i0fu8e0p 185 19 BCoV BCoV NNP cord-265978-i0fu8e0p 185 20 pathogenesis pathogenesis NN cord-265978-i0fu8e0p 185 21 and and CC cord-265978-i0fu8e0p 185 22 vaccine vaccine NN cord-265978-i0fu8e0p 185 23 trials trial NNS cord-265978-i0fu8e0p 185 24 . . . cord-265978-i0fu8e0p 186 1 H.M. H.M. NNP cord-265978-i0fu8e0p 186 2 Amer Amer NNP cord-265978-i0fu8e0p 186 3 , , , cord-265978-i0fu8e0p 186 4 H.M. H.M. NNP cord-265978-i0fu8e0p 186 5 designed design VBD cord-265978-i0fu8e0p 186 6 the the DT cord-265978-i0fu8e0p 186 7 experiments experiment NNS cord-265978-i0fu8e0p 186 8 , , , cord-265978-i0fu8e0p 186 9 performed perform VBD cord-265978-i0fu8e0p 186 10 the the DT cord-265978-i0fu8e0p 186 11 practical practical JJ cord-265978-i0fu8e0p 186 12 work work NN cord-265978-i0fu8e0p 186 13 and and CC cord-265978-i0fu8e0p 186 14 revised revise VBD cord-265978-i0fu8e0p 186 15 the the DT cord-265978-i0fu8e0p 186 16 manuscript manuscript NN cord-265978-i0fu8e0p 186 17 ; ; : cord-265978-i0fu8e0p 186 18 F.N. F.N. NNP cord-265978-i0fu8e0p 186 19 Almajhdi Almajhdi NNP cord-265978-i0fu8e0p 186 20 developed develop VBD cord-265978-i0fu8e0p 186 21 the the DT cord-265978-i0fu8e0p 186 22 concept concept NN cord-265978-i0fu8e0p 186 23 , , , cord-265978-i0fu8e0p 186 24 interpret interpret VB cord-265978-i0fu8e0p 186 25 the the DT cord-265978-i0fu8e0p 186 26 results result NNS cord-265978-i0fu8e0p 186 27 and and CC cord-265978-i0fu8e0p 186 28 wrote write VBD cord-265978-i0fu8e0p 186 29 the the DT cord-265978-i0fu8e0p 186 30 manuscript manuscript NN cord-265978-i0fu8e0p 186 31 . . . cord-265978-i0fu8e0p 187 1 Enteric enteric JJ cord-265978-i0fu8e0p 187 2 coronavirus coronavirus NN cord-265978-i0fu8e0p 188 1 A a DT cord-265978-i0fu8e0p 188 2 review review NN cord-265978-i0fu8e0p 188 3 of of IN cord-265978-i0fu8e0p 188 4 evidence evidence NN cord-265978-i0fu8e0p 188 5 implicating implicate VBG cord-265978-i0fu8e0p 188 6 Bovine bovine JJ cord-265978-i0fu8e0p 188 7 coronavirus coronavirus NN cord-265978-i0fu8e0p 188 8 in in IN cord-265978-i0fu8e0p 188 9 the the DT cord-265978-i0fu8e0p 188 10 etiology etiology NN cord-265978-i0fu8e0p 188 11 of of IN cord-265978-i0fu8e0p 188 12 winter winter NN cord-265978-i0fu8e0p 188 13 dysentery dysentery NN cord-265978-i0fu8e0p 188 14 in in IN cord-265978-i0fu8e0p 188 15 cows cow NNS cord-265978-i0fu8e0p 189 1 : : : cord-265978-i0fu8e0p 189 2 an an DT cord-265978-i0fu8e0p 189 3 enigma enigma NN cord-265978-i0fu8e0p 189 4 resolved resolve VBN cord-265978-i0fu8e0p 189 5 ? ? . cord-265978-i0fu8e0p 190 1 Coronavirus Coronavirus NNP cord-265978-i0fu8e0p 190 2 and and CC cord-265978-i0fu8e0p 190 3 Pasteurella Pasteurella NNP cord-265978-i0fu8e0p 190 4 infections infection NNS cord-265978-i0fu8e0p 190 5 in in IN cord-265978-i0fu8e0p 190 6 bovine bovine JJ cord-265978-i0fu8e0p 190 7 shipping shipping NN cord-265978-i0fu8e0p 190 8 fever fever NN cord-265978-i0fu8e0p 190 9 pneumonia pneumonia NN cord-265978-i0fu8e0p 190 10 and and CC cord-265978-i0fu8e0p 190 11 Evans Evans NNP cord-265978-i0fu8e0p 190 12 criteria criterion NNS cord-265978-i0fu8e0p 190 13 for for IN cord-265978-i0fu8e0p 190 14 causation causation NN cord-265978-i0fu8e0p 190 15 Lactogenic Lactogenic NNP cord-265978-i0fu8e0p 190 16 immunity immunity NN cord-265978-i0fu8e0p 190 17 following follow VBG cord-265978-i0fu8e0p 190 18 vaccination vaccination NN cord-265978-i0fu8e0p 190 19 of of IN cord-265978-i0fu8e0p 190 20 cattle cattle NNS cord-265978-i0fu8e0p 190 21 with with IN cord-265978-i0fu8e0p 190 22 Bovine bovine JJ cord-265978-i0fu8e0p 190 23 coronavirus coronavirus NN cord-265978-i0fu8e0p 190 24 Virus Virus NNP cord-265978-i0fu8e0p 190 25 Taxonomy Taxonomy NNP cord-265978-i0fu8e0p 190 26 . . . cord-265978-i0fu8e0p 191 1 Classification classification NN cord-265978-i0fu8e0p 191 2 and and CC cord-265978-i0fu8e0p 191 3 nomenclature nomenclature NN cord-265978-i0fu8e0p 191 4 of of IN cord-265978-i0fu8e0p 191 5 viruses virus NNS cord-265978-i0fu8e0p 191 6 . . . cord-265978-i0fu8e0p 192 1 Seventh seventh JJ cord-265978-i0fu8e0p 192 2 report report NN cord-265978-i0fu8e0p 192 3 of of IN cord-265978-i0fu8e0p 192 4 the the DT cord-265978-i0fu8e0p 192 5 International International NNP cord-265978-i0fu8e0p 192 6 Committee Committee NNP cord-265978-i0fu8e0p 192 7 on on IN cord-265978-i0fu8e0p 192 8 the the DT cord-265978-i0fu8e0p 192 9 Taxonomy Taxonomy NNP cord-265978-i0fu8e0p 192 10 of of IN cord-265978-i0fu8e0p 192 11 viruses virus NNS cord-265978-i0fu8e0p 193 1 Bovine bovine JJ cord-265978-i0fu8e0p 193 2 coronavirus coronavirus NN cord-265978-i0fu8e0p 193 3 genome genome NN cord-265978-i0fu8e0p 194 1 The the DT cord-265978-i0fu8e0p 194 2 molecular molecular JJ cord-265978-i0fu8e0p 194 3 biology biology NN cord-265978-i0fu8e0p 194 4 of of IN cord-265978-i0fu8e0p 194 5 coronaviruses coronaviruse NNS cord-265978-i0fu8e0p 194 6 Sensitivity sensitivity NN cord-265978-i0fu8e0p 194 7 comparison comparison NN cord-265978-i0fu8e0p 194 8 for for IN cord-265978-i0fu8e0p 194 9 detection detection NN cord-265978-i0fu8e0p 194 10 of of IN cord-265978-i0fu8e0p 194 11 respiratory respiratory JJ cord-265978-i0fu8e0p 194 12 Bovine bovine JJ cord-265978-i0fu8e0p 194 13 coronaviruses coronaviruse NNS cord-265978-i0fu8e0p 194 14 in in IN cord-265978-i0fu8e0p 194 15 nasal nasal NN cord-265978-i0fu8e0p 194 16 samples sample NNS cord-265978-i0fu8e0p 194 17 from from IN cord-265978-i0fu8e0p 194 18 feedlot feedlot NN cord-265978-i0fu8e0p 194 19 cattle cattle NNS cord-265978-i0fu8e0p 194 20 by by IN cord-265978-i0fu8e0p 194 21 ELISA ELISA NNP cord-265978-i0fu8e0p 194 22 and and CC cord-265978-i0fu8e0p 194 23 isolation isolation NN cord-265978-i0fu8e0p 194 24 with with IN cord-265978-i0fu8e0p 194 25 the the DT cord-265978-i0fu8e0p 194 26 G g NN cord-265978-i0fu8e0p 194 27 clone clone NN cord-265978-i0fu8e0p 194 28 of of IN cord-265978-i0fu8e0p 194 29 HRT-18 HRT-18 NNP cord-265978-i0fu8e0p 194 30 cells cell NNS cord-265978-i0fu8e0p 194 31 Cross Cross NNP cord-265978-i0fu8e0p 194 32 protection protection NN cord-265978-i0fu8e0p 194 33 studies study NNS cord-265978-i0fu8e0p 194 34 between between IN cord-265978-i0fu8e0p 194 35 respiratory respiratory JJ cord-265978-i0fu8e0p 194 36 and and CC cord-265978-i0fu8e0p 194 37 calf calf NN cord-265978-i0fu8e0p 194 38 diarrhea diarrhea NN cord-265978-i0fu8e0p 194 39 and and CC cord-265978-i0fu8e0p 194 40 winter winter NN cord-265978-i0fu8e0p 194 41 dysentery dysentery NN cord-265978-i0fu8e0p 194 42 coronavirus coronavirus NN cord-265978-i0fu8e0p 194 43 strains strain NNS cord-265978-i0fu8e0p 194 44 in in IN cord-265978-i0fu8e0p 194 45 calves calf NNS cord-265978-i0fu8e0p 194 46 and and CC cord-265978-i0fu8e0p 194 47 RT RT NNP cord-265978-i0fu8e0p 194 48 - - HYPH cord-265978-i0fu8e0p 194 49 PCR PCR NNP cord-265978-i0fu8e0p 194 50 and and CC cord-265978-i0fu8e0p 194 51 nested nest VBN cord-265978-i0fu8e0p 194 52 PCR PCR NNP cord-265978-i0fu8e0p 194 53 for for IN cord-265978-i0fu8e0p 194 54 their -PRON- PRP$ cord-265978-i0fu8e0p 194 55 detection detection NN cord-265978-i0fu8e0p 194 56 Improved improve VBN cord-265978-i0fu8e0p 194 57 detection detection NN cord-265978-i0fu8e0p 194 58 of of IN cord-265978-i0fu8e0p 194 59 bovine bovine JJ cord-265978-i0fu8e0p 194 60 coronavirus coronavirus NN cord-265978-i0fu8e0p 194 61 N n CD cord-265978-i0fu8e0p 194 62 gene gene NN cord-265978-i0fu8e0p 194 63 in in IN cord-265978-i0fu8e0p 194 64 faeces faece NNS cord-265978-i0fu8e0p 194 65 of of IN cord-265978-i0fu8e0p 194 66 calves calf NNS cord-265978-i0fu8e0p 194 67 infected infect VBN cord-265978-i0fu8e0p 194 68 naturally naturally RB cord-265978-i0fu8e0p 194 69 by by IN cord-265978-i0fu8e0p 194 70 a a DT cord-265978-i0fu8e0p 194 71 semi semi RB cord-265978-i0fu8e0p 194 72 - - JJ cord-265978-i0fu8e0p 194 73 nested nested JJ cord-265978-i0fu8e0p 194 74 PCR PCR NNP cord-265978-i0fu8e0p 194 75 assay assay NN cord-265978-i0fu8e0p 194 76 and and CC cord-265978-i0fu8e0p 194 77 an an DT cord-265978-i0fu8e0p 194 78 internal internal JJ cord-265978-i0fu8e0p 194 79 control control NN cord-265978-i0fu8e0p 194 80 Quantification quantification NN cord-265978-i0fu8e0p 194 81 using use VBG cord-265978-i0fu8e0p 194 82 real real JJ cord-265978-i0fu8e0p 194 83 - - HYPH cord-265978-i0fu8e0p 194 84 time time NN cord-265978-i0fu8e0p 194 85 PCR pcr NN cord-265978-i0fu8e0p 194 86 technology technology NN cord-265978-i0fu8e0p 194 87 : : : cord-265978-i0fu8e0p 194 88 applications application NNS cord-265978-i0fu8e0p 194 89 and and CC cord-265978-i0fu8e0p 194 90 limitations limitation NNS cord-265978-i0fu8e0p 194 91 Detection detection NN cord-265978-i0fu8e0p 194 92 and and CC cord-265978-i0fu8e0p 194 93 monitoring monitoring NN cord-265978-i0fu8e0p 194 94 of of IN cord-265978-i0fu8e0p 194 95 virus virus NN cord-265978-i0fu8e0p 194 96 infections infection NNS cord-265978-i0fu8e0p 194 97 by by IN cord-265978-i0fu8e0p 194 98 real real JJ cord-265978-i0fu8e0p 194 99 - - HYPH cord-265978-i0fu8e0p 194 100 time time NN cord-265978-i0fu8e0p 194 101 PCR PCR NNP cord-265978-i0fu8e0p 194 102 SYBR SYBR NNP cord-265978-i0fu8e0p 194 103 Green Green NNP cord-265978-i0fu8e0p 194 104 real real JJ cord-265978-i0fu8e0p 194 105 - - HYPH cord-265978-i0fu8e0p 194 106 time time NN cord-265978-i0fu8e0p 194 107 reverse reverse NN cord-265978-i0fu8e0p 194 108 transcription transcription NN cord-265978-i0fu8e0p 194 109 - - HYPH cord-265978-i0fu8e0p 194 110 polymerase polymerase NN cord-265978-i0fu8e0p 194 111 chain chain NN cord-265978-i0fu8e0p 194 112 reaction reaction NN cord-265978-i0fu8e0p 194 113 assay assay NN cord-265978-i0fu8e0p 194 114 for for IN cord-265978-i0fu8e0p 194 115 the the DT cord-265978-i0fu8e0p 194 116 genetic genetic JJ cord-265978-i0fu8e0p 194 117 detection detection NN cord-265978-i0fu8e0p 194 118 of of IN cord-265978-i0fu8e0p 194 119 coronaviruses coronaviruse NNS cord-265978-i0fu8e0p 195 1 Baculovirus Baculovirus NNP cord-265978-i0fu8e0p 195 2 expression expression NN cord-265978-i0fu8e0p 195 3 of of IN cord-265978-i0fu8e0p 195 4 the the DT cord-265978-i0fu8e0p 195 5 Bovine bovine JJ cord-265978-i0fu8e0p 195 6 coronavirus coronavirus NN cord-265978-i0fu8e0p 195 7 nucleocapsid nucleocapsid NN cord-265978-i0fu8e0p 195 8 protein protein NN cord-265978-i0fu8e0p 195 9 in in IN cord-265978-i0fu8e0p 195 10 Spodoptera Spodoptera NNP cord-265978-i0fu8e0p 195 11 frugiperda frugiperda JJ cord-265978-i0fu8e0p 195 12 insect insect NN cord-265978-i0fu8e0p 195 13 cells cell NNS cord-265978-i0fu8e0p 195 14 Development Development NNP cord-265978-i0fu8e0p 195 15 of of IN cord-265978-i0fu8e0p 195 16 a a DT cord-265978-i0fu8e0p 195 17 quantitative quantitative JJ cord-265978-i0fu8e0p 195 18 Light Light NNP cord-265978-i0fu8e0p 195 19 Cycler Cycler NNP cord-265978-i0fu8e0p 195 20 real real JJ cord-265978-i0fu8e0p 195 21 - - HYPH cord-265978-i0fu8e0p 195 22 time time NN cord-265978-i0fu8e0p 195 23 RT RT NNP cord-265978-i0fu8e0p 195 24 - - HYPH cord-265978-i0fu8e0p 195 25 PCR PCR NNP cord-265978-i0fu8e0p 195 26 for for IN cord-265978-i0fu8e0p 195 27 detection detection NN cord-265978-i0fu8e0p 195 28 of of IN cord-265978-i0fu8e0p 195 29 avian avian JJ cord-265978-i0fu8e0p 195 30 reovirus reovirus NNP cord-265978-i0fu8e0p 195 31 Cell cell NN cord-265978-i0fu8e0p 195 32 culture culture NN cord-265978-i0fu8e0p 195 33 propagation propagation NN cord-265978-i0fu8e0p 195 34 of of IN cord-265978-i0fu8e0p 195 35 Bovine bovine JJ cord-265978-i0fu8e0p 195 36 coronavirus coronavirus NN cord-265978-i0fu8e0p 195 37 Real real JJ cord-265978-i0fu8e0p 195 38 - - HYPH cord-265978-i0fu8e0p 195 39 time time NN cord-265978-i0fu8e0p 195 40 PCR PCR NNP cord-265978-i0fu8e0p 195 41 in in IN cord-265978-i0fu8e0p 195 42 the the DT cord-265978-i0fu8e0p 195 43 microbiology microbiology NN cord-265978-i0fu8e0p 195 44 laboratory laboratory NN cord-265978-i0fu8e0p 195 45 Sequence Sequence NNP cord-265978-i0fu8e0p 195 46 analysis analysis NN cord-265978-i0fu8e0p 195 47 of of IN cord-265978-i0fu8e0p 195 48 the the DT cord-265978-i0fu8e0p 195 49 bovine bovine JJ cord-265978-i0fu8e0p 195 50 coronavirus coronavirus NN cord-265978-i0fu8e0p 195 51 nucleocapsid nucleocapsid NN cord-265978-i0fu8e0p 195 52 and and CC cord-265978-i0fu8e0p 195 53 matrix matrix NN cord-265978-i0fu8e0p 195 54 protein protein NN cord-265978-i0fu8e0p 195 55 genes gene NNS cord-265978-i0fu8e0p 195 56 Coronaviruses Coronaviruses NNPS cord-265978-i0fu8e0p 195 57 : : : cord-265978-i0fu8e0p 196 1 structure structure NN cord-265978-i0fu8e0p 196 2 and and CC cord-265978-i0fu8e0p 196 3 genome genome NN cord-265978-i0fu8e0p 196 4 expression expression NN cord-265978-i0fu8e0p 196 5 Detection detection NN cord-265978-i0fu8e0p 196 6 of of IN cord-265978-i0fu8e0p 196 7 a a DT cord-265978-i0fu8e0p 196 8 group group NN cord-265978-i0fu8e0p 196 9 2 2 CD cord-265978-i0fu8e0p 196 10 coronavirus coronavirus NN cord-265978-i0fu8e0p 196 11 in in IN cord-265978-i0fu8e0p 196 12 dogs dog NNS cord-265978-i0fu8e0p 196 13 with with IN cord-265978-i0fu8e0p 196 14 canine canine JJ cord-265978-i0fu8e0p 196 15 infectious infectious JJ cord-265978-i0fu8e0p 196 16 respiratory respiratory JJ cord-265978-i0fu8e0p 196 17 disease disease NN cord-265978-i0fu8e0p 196 18 Complete complete JJ cord-265978-i0fu8e0p 196 19 genomic genomic JJ cord-265978-i0fu8e0p 196 20 sequence sequence NN cord-265978-i0fu8e0p 196 21 of of IN cord-265978-i0fu8e0p 196 22 human human JJ cord-265978-i0fu8e0p 196 23 coronavirus coronavirus NN cord-265978-i0fu8e0p 196 24 OC43 OC43 NNP cord-265978-i0fu8e0p 196 25 : : : cord-265978-i0fu8e0p 196 26 molecular molecular JJ cord-265978-i0fu8e0p 196 27 clock clock NN cord-265978-i0fu8e0p 196 28 analysis analysis NN cord-265978-i0fu8e0p 196 29 suggests suggest VBZ cord-265978-i0fu8e0p 196 30 a a DT cord-265978-i0fu8e0p 196 31 relatively relatively RB cord-265978-i0fu8e0p 196 32 recent recent JJ cord-265978-i0fu8e0p 196 33 zoonotic zoonotic JJ cord-265978-i0fu8e0p 196 34 coronavirus coronavirus NN cord-265978-i0fu8e0p 196 35 transmission transmission NN cord-265978-i0fu8e0p 196 36 event event NN cord-265978-i0fu8e0p 196 37 Biologic Biologic NNP cord-265978-i0fu8e0p 196 38 , , , cord-265978-i0fu8e0p 196 39 antigenic antigenic JJ cord-265978-i0fu8e0p 196 40 , , , cord-265978-i0fu8e0p 196 41 and and CC cord-265978-i0fu8e0p 196 42 full full JJ cord-265978-i0fu8e0p 196 43 - - HYPH cord-265978-i0fu8e0p 196 44 length length NN cord-265978-i0fu8e0p 196 45 genomic genomic JJ cord-265978-i0fu8e0p 196 46 characterization characterization NN cord-265978-i0fu8e0p 196 47 of of IN cord-265978-i0fu8e0p 196 48 a a DT cord-265978-i0fu8e0p 196 49 bovine bovine NN cord-265978-i0fu8e0p 196 50 - - HYPH cord-265978-i0fu8e0p 196 51 like like JJ cord-265978-i0fu8e0p 196 52 coronavirus coronavirus NN cord-265978-i0fu8e0p 196 53 isolated isolate VBN cord-265978-i0fu8e0p 196 54 from from IN cord-265978-i0fu8e0p 196 55 a a DT cord-265978-i0fu8e0p 196 56 giraffe giraffe NN cord-265978-i0fu8e0p 196 57 Real real JJ cord-265978-i0fu8e0p 196 58 - - HYPH cord-265978-i0fu8e0p 196 59 Time time NN cord-265978-i0fu8e0p 196 60 PCR PCR NNP cord-265978-i0fu8e0p 196 61 in in IN cord-265978-i0fu8e0p 196 62 clinical clinical JJ cord-265978-i0fu8e0p 196 63 microbiology microbiology NN cord-265978-i0fu8e0p 196 64 : : : cord-265978-i0fu8e0p 196 65 applications application NNS cord-265978-i0fu8e0p 196 66 for for IN cord-265978-i0fu8e0p 196 67 routine routine JJ cord-265978-i0fu8e0p 196 68 laboratory laboratory NN cord-265978-i0fu8e0p 196 69 testing test VBG cord-265978-i0fu8e0p 196 70 Verification verification NN cord-265978-i0fu8e0p 196 71 and and CC cord-265978-i0fu8e0p 196 72 validation validation NN cord-265978-i0fu8e0p 196 73 of of IN cord-265978-i0fu8e0p 196 74 diagnostic diagnostic JJ cord-265978-i0fu8e0p 196 75 laboratory laboratory NN cord-265978-i0fu8e0p 196 76 tests test NNS cord-265978-i0fu8e0p 196 77 in in IN cord-265978-i0fu8e0p 196 78 clinical clinical JJ cord-265978-i0fu8e0p 196 79 virology virology NN cord-265978-i0fu8e0p 196 80 Complex complex JJ cord-265978-i0fu8e0p 196 81 polysaccharides polysaccharide NNS cord-265978-i0fu8e0p 196 82 as as IN cord-265978-i0fu8e0p 196 83 PCR PCR NNP cord-265978-i0fu8e0p 196 84 inhibitors inhibitor NNS cord-265978-i0fu8e0p 196 85 in in IN cord-265978-i0fu8e0p 196 86 feces fece NNS cord-265978-i0fu8e0p 196 87 : : : cord-265978-i0fu8e0p 196 88 Helicobacter Helicobacter NNP cord-265978-i0fu8e0p 196 89 pylori pylori NN cord-265978-i0fu8e0p 196 90 model model NN cord-265978-i0fu8e0p 197 1 Practical practical JJ cord-265978-i0fu8e0p 197 2 considerations consideration NNS cord-265978-i0fu8e0p 197 3 in in IN cord-265978-i0fu8e0p 197 4 design design NN cord-265978-i0fu8e0p 197 5 of of IN cord-265978-i0fu8e0p 197 6 internal internal JJ cord-265978-i0fu8e0p 197 7 amplification amplification NN cord-265978-i0fu8e0p 197 8 controls control NNS cord-265978-i0fu8e0p 197 9 for for IN cord-265978-i0fu8e0p 197 10 diagnostic diagnostic JJ cord-265978-i0fu8e0p 197 11 PCR PCR NNP cord-265978-i0fu8e0p 197 12 assays assay NNS cord-265978-i0fu8e0p 198 1 The the DT cord-265978-i0fu8e0p 198 2 real real JJ cord-265978-i0fu8e0p 198 3 time time NN cord-265978-i0fu8e0p 198 4 polymerase polymerase NN cord-265978-i0fu8e0p 198 5 chain chain NN cord-265978-i0fu8e0p 198 6 reaction reaction NN cord-265978-i0fu8e0p 198 7 Differential differential JJ cord-265978-i0fu8e0p 198 8 amplification amplification NN cord-265978-i0fu8e0p 198 9 and and CC cord-265978-i0fu8e0p 198 10 quantitation quantitation NN cord-265978-i0fu8e0p 198 11 of of IN cord-265978-i0fu8e0p 198 12 Marek Marek NNP cord-265978-i0fu8e0p 198 13 's 's POS cord-265978-i0fu8e0p 198 14 disease disease NN cord-265978-i0fu8e0p 198 15 viruses virus NNS cord-265978-i0fu8e0p 198 16 using use VBG cord-265978-i0fu8e0p 198 17 real real JJ cord-265978-i0fu8e0p 198 18 - - HYPH cord-265978-i0fu8e0p 198 19 time time NN cord-265978-i0fu8e0p 198 20 polymerase polymerase NN cord-265978-i0fu8e0p 198 21 chain chain NN cord-265978-i0fu8e0p 198 22 reaction reaction NN cord-265978-i0fu8e0p 198 23 Detection detection NN cord-265978-i0fu8e0p 198 24 of of IN cord-265978-i0fu8e0p 198 25 bovine bovine JJ cord-265978-i0fu8e0p 198 26 coronavirus coronavirus NN cord-265978-i0fu8e0p 198 27 using use VBG cord-265978-i0fu8e0p 198 28 a a DT cord-265978-i0fu8e0p 198 29 TaqMan TaqMan NNP cord-265978-i0fu8e0p 198 30 - - HYPH cord-265978-i0fu8e0p 198 31 based base VBN cord-265978-i0fu8e0p 198 32 real real JJ cord-265978-i0fu8e0p 198 33 - - HYPH cord-265978-i0fu8e0p 198 34 time time NN cord-265978-i0fu8e0p 198 35 RT RT NNP cord-265978-i0fu8e0p 198 36 - - HYPH cord-265978-i0fu8e0p 198 37 PCR PCR NNP cord-265978-i0fu8e0p 198 38 assay assay NN cord-265978-i0fu8e0p 198 39 Development Development NNP cord-265978-i0fu8e0p 198 40 of of IN cord-265978-i0fu8e0p 198 41 a a DT cord-265978-i0fu8e0p 198 42 panel panel NN cord-265978-i0fu8e0p 198 43 of of IN cord-265978-i0fu8e0p 198 44 multiplex multiplex JJ cord-265978-i0fu8e0p 198 45 real real JJ cord-265978-i0fu8e0p 198 46 - - HYPH cord-265978-i0fu8e0p 198 47 time time NN cord-265978-i0fu8e0p 198 48 polymerase polymerase NN cord-265978-i0fu8e0p 198 49 chain chain NN cord-265978-i0fu8e0p 198 50 reaction reaction NN cord-265978-i0fu8e0p 198 51 assays assay NNS cord-265978-i0fu8e0p 198 52 for for IN cord-265978-i0fu8e0p 198 53 simultaneous simultaneous JJ cord-265978-i0fu8e0p 198 54 detection detection NN cord-265978-i0fu8e0p 198 55 of of IN cord-265978-i0fu8e0p 198 56 major major JJ cord-265978-i0fu8e0p 198 57 agents agent NNS cord-265978-i0fu8e0p 198 58 causing cause VBG cord-265978-i0fu8e0p 198 59 calf calf NN cord-265978-i0fu8e0p 198 60 diarrhea diarrhea NN cord-265978-i0fu8e0p 198 61 in in IN cord-265978-i0fu8e0p 198 62 feces fece NNS cord-265978-i0fu8e0p 198 63 Rapid Rapid NNP cord-265978-i0fu8e0p 198 64 detection detection NN cord-265978-i0fu8e0p 198 65 of of IN cord-265978-i0fu8e0p 198 66 herpes herpes NNP cord-265978-i0fu8e0p 198 67 simplex simplex NNP cord-265978-i0fu8e0p 198 68 virus virus NN cord-265978-i0fu8e0p 198 69 DNA dna NN cord-265978-i0fu8e0p 198 70 in in IN cord-265978-i0fu8e0p 198 71 genital genital JJ cord-265978-i0fu8e0p 198 72 ulcers ulcer NNS cord-265978-i0fu8e0p 198 73 by by IN cord-265978-i0fu8e0p 198 74 real real JJ cord-265978-i0fu8e0p 198 75 - - HYPH cord-265978-i0fu8e0p 198 76 time time NN cord-265978-i0fu8e0p 198 77 PCR pcr NN cord-265978-i0fu8e0p 198 78 using use VBG cord-265978-i0fu8e0p 198 79 SYBR SYBR NNP cord-265978-i0fu8e0p 198 80 Green Green NNP cord-265978-i0fu8e0p 199 1 I -PRON- PRP cord-265978-i0fu8e0p 199 2 dye dye VBP cord-265978-i0fu8e0p 199 3 as as IN cord-265978-i0fu8e0p 199 4 the the DT cord-265978-i0fu8e0p 199 5 detection detection NN cord-265978-i0fu8e0p 199 6 signal signal NN cord-265978-i0fu8e0p 199 7 SYBR SYBR NNP cord-265978-i0fu8e0p 199 8 Green Green NNP cord-265978-i0fu8e0p 200 1 I -PRON- PRP cord-265978-i0fu8e0p 200 2 DNA dna NN cord-265978-i0fu8e0p 200 3 staining staining NN cord-265978-i0fu8e0p 200 4 increases increase VBZ cord-265978-i0fu8e0p 200 5 the the DT cord-265978-i0fu8e0p 200 6 detection detection NN cord-265978-i0fu8e0p 200 7 sensitivity sensitivity NN cord-265978-i0fu8e0p 200 8 of of IN cord-265978-i0fu8e0p 200 9 viruses virus NNS cord-265978-i0fu8e0p 200 10 by by IN cord-265978-i0fu8e0p 200 11 polymerase polymerase NN cord-265978-i0fu8e0p 200 12 chain chain NN cord-265978-i0fu8e0p 200 13 reaction reaction NN