id sid tid token lemma pos cord-017363-dmb42kna 1 1 key key NN cord-017363-dmb42kna 1 2 : : : cord-017363-dmb42kna 1 3 cord-017363-dmb42kna cord-017363-dmb42kna NN cord-017363-dmb42kna 1 4 authors author NNS cord-017363-dmb42kna 1 5 : : : cord-017363-dmb42kna 1 6 Vemulapalli Vemulapalli NNP cord-017363-dmb42kna 1 7 , , , cord-017363-dmb42kna 1 8 Ramesh Ramesh NNP cord-017363-dmb42kna 1 9 title title NN cord-017363-dmb42kna 1 10 : : : cord-017363-dmb42kna 1 11 Real real JJ cord-017363-dmb42kna 1 12 - - HYPH cord-017363-dmb42kna 1 13 Time time NN cord-017363-dmb42kna 1 14 Reverse Reverse NNP cord-017363-dmb42kna 1 15 Transcription Transcription NNP cord-017363-dmb42kna 1 16 Polymerase Polymerase NNP cord-017363-dmb42kna 1 17 Chain Chain NNP cord-017363-dmb42kna 1 18 Reaction reaction NN cord-017363-dmb42kna 1 19 for for IN cord-017363-dmb42kna 1 20 Rapid Rapid NNP cord-017363-dmb42kna 1 21 Detection Detection NNP cord-017363-dmb42kna 1 22 of of IN cord-017363-dmb42kna 1 23 Transmissible transmissible JJ cord-017363-dmb42kna 1 24 Gastroenteritis Gastroenteritis NNP cord-017363-dmb42kna 1 25 Virus Virus NNP cord-017363-dmb42kna 1 26 date date NN cord-017363-dmb42kna 1 27 : : : cord-017363-dmb42kna 1 28 2015 2015 CD cord-017363-dmb42kna 1 29 - - HYPH cord-017363-dmb42kna 1 30 09 09 CD cord-017363-dmb42kna 1 31 - - SYM cord-017363-dmb42kna 1 32 10 10 CD cord-017363-dmb42kna 1 33 journal journal NN cord-017363-dmb42kna 1 34 : : : cord-017363-dmb42kna 2 1 Animal Animal NNP cord-017363-dmb42kna 2 2 Coronaviruses Coronaviruses NNP cord-017363-dmb42kna 2 3 DOI DOI NNP cord-017363-dmb42kna 2 4 : : : cord-017363-dmb42kna 2 5 10.1007/978 10.1007/978 CD cord-017363-dmb42kna 2 6 - - HYPH cord-017363-dmb42kna 2 7 1 1 CD cord-017363-dmb42kna 2 8 - - HYPH cord-017363-dmb42kna 2 9 4939 4939 CD cord-017363-dmb42kna 2 10 - - HYPH cord-017363-dmb42kna 2 11 3414 3414 CD cord-017363-dmb42kna 2 12 - - HYPH cord-017363-dmb42kna 2 13 0_10 0_10 CD cord-017363-dmb42kna 3 1 sha sha NNP cord-017363-dmb42kna 3 2 : : : cord-017363-dmb42kna 4 1 9e8479f3f693499f502384fd441ea492768775c6 9e8479f3f693499f502384fd441ea492768775c6 NNP cord-017363-dmb42kna 4 2 doc_id doc_id CD cord-017363-dmb42kna 4 3 : : : cord-017363-dmb42kna 4 4 17363 17363 CD cord-017363-dmb42kna 4 5 cord_uid cord_uid NNS cord-017363-dmb42kna 4 6 : : : cord-017363-dmb42kna 5 1 dmb42kna dmb42kna NNS cord-017363-dmb42kna 6 1 Transmissible transmissible JJ cord-017363-dmb42kna 6 2 gastroenteritis gastroenteritis NN cord-017363-dmb42kna 6 3 ( ( -LRB- cord-017363-dmb42kna 6 4 TGE TGE NNP cord-017363-dmb42kna 6 5 ) ) -RRB- cord-017363-dmb42kna 6 6 is be VBZ cord-017363-dmb42kna 6 7 a a DT cord-017363-dmb42kna 6 8 highly highly RB cord-017363-dmb42kna 6 9 contagious contagious JJ cord-017363-dmb42kna 6 10 disease disease NN cord-017363-dmb42kna 6 11 of of IN cord-017363-dmb42kna 6 12 pigs pig NNS cord-017363-dmb42kna 6 13 caused cause VBN cord-017363-dmb42kna 6 14 by by IN cord-017363-dmb42kna 6 15 the the DT cord-017363-dmb42kna 6 16 TGE TGE NNP cord-017363-dmb42kna 6 17 virus virus NN cord-017363-dmb42kna 6 18 ( ( -LRB- cord-017363-dmb42kna 6 19 TGEV TGEV NNP cord-017363-dmb42kna 6 20 ) ) -RRB- cord-017363-dmb42kna 6 21 . . . cord-017363-dmb42kna 7 1 Rapid rapid JJ cord-017363-dmb42kna 7 2 detection detection NN cord-017363-dmb42kna 7 3 of of IN cord-017363-dmb42kna 7 4 the the DT cord-017363-dmb42kna 7 5 virus virus NN cord-017363-dmb42kna 7 6 in in IN cord-017363-dmb42kna 7 7 the the DT cord-017363-dmb42kna 7 8 affected affected JJ cord-017363-dmb42kna 7 9 pigs pig NNS cord-017363-dmb42kna 7 10 ’ ' '' cord-017363-dmb42kna 7 11 feces fece NNS cord-017363-dmb42kna 7 12 is be VBZ cord-017363-dmb42kna 7 13 critical critical JJ cord-017363-dmb42kna 7 14 for for IN cord-017363-dmb42kna 7 15 controlling control VBG cord-017363-dmb42kna 7 16 the the DT cord-017363-dmb42kna 7 17 disease disease NN cord-017363-dmb42kna 7 18 outbreaks outbreak NNS cord-017363-dmb42kna 7 19 . . . cord-017363-dmb42kna 8 1 The the DT cord-017363-dmb42kna 8 2 real real JJ cord-017363-dmb42kna 8 3 - - HYPH cord-017363-dmb42kna 8 4 time time NN cord-017363-dmb42kna 8 5 RT RT NNP cord-017363-dmb42kna 8 6 - - HYPH cord-017363-dmb42kna 8 7 PCR PCR NNP cord-017363-dmb42kna 8 8 assay assay NN cord-017363-dmb42kna 8 9 described describe VBN cord-017363-dmb42kna 8 10 in in IN cord-017363-dmb42kna 8 11 this this DT cord-017363-dmb42kna 8 12 chapter chapter NN cord-017363-dmb42kna 8 13 can can MD cord-017363-dmb42kna 8 14 quickly quickly RB cord-017363-dmb42kna 8 15 detect detect VB cord-017363-dmb42kna 8 16 the the DT cord-017363-dmb42kna 8 17 presence presence NN cord-017363-dmb42kna 8 18 of of IN cord-017363-dmb42kna 8 19 TGEV TGEV NNP cord-017363-dmb42kna 8 20 in in IN cord-017363-dmb42kna 8 21 fecal fecal JJ cord-017363-dmb42kna 8 22 samples sample NNS cord-017363-dmb42kna 8 23 with with IN cord-017363-dmb42kna 8 24 high high JJ cord-017363-dmb42kna 8 25 sensitivity sensitivity NN cord-017363-dmb42kna 8 26 and and CC cord-017363-dmb42kna 8 27 specificity specificity NN cord-017363-dmb42kna 8 28 . . . cord-017363-dmb42kna 9 1 Transmissible transmissible JJ cord-017363-dmb42kna 9 2 gastroenteritis gastroenteritis NN cord-017363-dmb42kna 9 3 ( ( -LRB- cord-017363-dmb42kna 9 4 TGE TGE NNP cord-017363-dmb42kna 9 5 ) ) -RRB- cord-017363-dmb42kna 9 6 is be VBZ cord-017363-dmb42kna 9 7 a a DT cord-017363-dmb42kna 9 8 highly highly RB cord-017363-dmb42kna 9 9 contagious contagious JJ cord-017363-dmb42kna 9 10 , , , cord-017363-dmb42kna 9 11 acute acute JJ cord-017363-dmb42kna 9 12 viral viral JJ cord-017363-dmb42kna 9 13 disease disease NN cord-017363-dmb42kna 9 14 of of IN cord-017363-dmb42kna 9 15 pigs pig NNS cord-017363-dmb42kna 9 16 [ [ -LRB- cord-017363-dmb42kna 9 17 1 1 CD cord-017363-dmb42kna 9 18 ] ] -RRB- cord-017363-dmb42kna 9 19 . . . cord-017363-dmb42kna 10 1 TGE TGE NNP cord-017363-dmb42kna 10 2 can can MD cord-017363-dmb42kna 10 3 affect affect VB cord-017363-dmb42kna 10 4 pigs pig NNS cord-017363-dmb42kna 10 5 of of IN cord-017363-dmb42kna 10 6 all all DT cord-017363-dmb42kna 10 7 ages age NNS cord-017363-dmb42kna 10 8 , , , cord-017363-dmb42kna 10 9 but but CC cord-017363-dmb42kna 10 10 the the DT cord-017363-dmb42kna 10 11 disease disease NN cord-017363-dmb42kna 10 12 severity severity NN cord-017363-dmb42kna 10 13 and and CC cord-017363-dmb42kna 10 14 mortality mortality NN cord-017363-dmb42kna 10 15 rate rate NN cord-017363-dmb42kna 10 16 are be VBP cord-017363-dmb42kna 10 17 high high JJ cord-017363-dmb42kna 10 18 in in IN cord-017363-dmb42kna 10 19 piglets piglet NNS cord-017363-dmb42kna 10 20 under under IN cord-017363-dmb42kna 10 21 2 2 CD cord-017363-dmb42kna 10 22 weeks week NNS cord-017363-dmb42kna 10 23 of of IN cord-017363-dmb42kna 10 24 age age NN cord-017363-dmb42kna 10 25 . . . cord-017363-dmb42kna 11 1 The the DT cord-017363-dmb42kna 11 2 causative causative JJ cord-017363-dmb42kna 11 3 agent agent NN cord-017363-dmb42kna 11 4 is be VBZ cord-017363-dmb42kna 11 5 TGE TGE NNP cord-017363-dmb42kna 11 6 virus virus NN cord-017363-dmb42kna 11 7 ( ( -LRB- cord-017363-dmb42kna 11 8 TGEV TGEV NNP cord-017363-dmb42kna 11 9 ) ) -RRB- cord-017363-dmb42kna 11 10 , , , cord-017363-dmb42kna 11 11 a a DT cord-017363-dmb42kna 11 12 coronavirus coronavirus NN cord-017363-dmb42kna 11 13 that that WDT cord-017363-dmb42kna 11 14 primarily primarily RB cord-017363-dmb42kna 11 15 infects infect VBZ cord-017363-dmb42kna 11 16 and and CC cord-017363-dmb42kna 11 17 replicates replicate VBZ cord-017363-dmb42kna 11 18 in in IN cord-017363-dmb42kna 11 19 the the DT cord-017363-dmb42kna 11 20 epithelial epithelial JJ cord-017363-dmb42kna 11 21 cells cell NNS cord-017363-dmb42kna 11 22 of of IN cord-017363-dmb42kna 11 23 pig pig NN cord-017363-dmb42kna 11 24 intestines intestine NNS cord-017363-dmb42kna 11 25 . . . cord-017363-dmb42kna 12 1 Affected affected JJ cord-017363-dmb42kna 12 2 animals animal NNS cord-017363-dmb42kna 12 3 shed shed VBD cord-017363-dmb42kna 12 4 the the DT cord-017363-dmb42kna 12 5 virus virus NN cord-017363-dmb42kna 12 6 in in IN cord-017363-dmb42kna 12 7 their -PRON- PRP$ cord-017363-dmb42kna 12 8 feces fece NNS cord-017363-dmb42kna 12 9 . . . cord-017363-dmb42kna 13 1 The the DT cord-017363-dmb42kna 13 2 disease disease NN cord-017363-dmb42kna 13 3 transmission transmission NN cord-017363-dmb42kna 13 4 occurs occur VBZ cord-017363-dmb42kna 13 5 primarily primarily RB cord-017363-dmb42kna 13 6 via via IN cord-017363-dmb42kna 13 7 fecal fecal JJ cord-017363-dmb42kna 13 8 - - HYPH cord-017363-dmb42kna 13 9 oral oral JJ cord-017363-dmb42kna 13 10 route route NN cord-017363-dmb42kna 13 11 [ [ -LRB- cord-017363-dmb42kna 13 12 2 2 CD cord-017363-dmb42kna 13 13 ] ] -RRB- cord-017363-dmb42kna 13 14 . . . cord-017363-dmb42kna 14 1 During during IN cord-017363-dmb42kna 14 2 an an DT cord-017363-dmb42kna 14 3 outbreak outbreak NN cord-017363-dmb42kna 14 4 , , , cord-017363-dmb42kna 14 5 rapid rapid JJ cord-017363-dmb42kna 14 6 detection detection NN cord-017363-dmb42kna 14 7 of of IN cord-017363-dmb42kna 14 8 TGEV TGEV NNP cord-017363-dmb42kna 14 9 in in IN cord-017363-dmb42kna 14 10 feces fece NNS cord-017363-dmb42kna 14 11 is be VBZ cord-017363-dmb42kna 14 12 very very RB cord-017363-dmb42kna 14 13 useful useful JJ cord-017363-dmb42kna 14 14 for for IN cord-017363-dmb42kna 14 15 implementing implement VBG cord-017363-dmb42kna 14 16 the the DT cord-017363-dmb42kna 14 17 disease disease NN cord-017363-dmb42kna 14 18 management management NN cord-017363-dmb42kna 14 19 practices practice NNS cord-017363-dmb42kna 14 20 in in IN cord-017363-dmb42kna 14 21 a a DT cord-017363-dmb42kna 14 22 timely timely JJ cord-017363-dmb42kna 14 23 manner manner NN cord-017363-dmb42kna 14 24 . . . cord-017363-dmb42kna 15 1 Any any DT cord-017363-dmb42kna 15 2 TGEV TGEV NNP cord-017363-dmb42kna 15 3 - - HYPH cord-017363-dmb42kna 15 4 specifi specifi NNP cord-017363-dmb42kna 15 5 c c NN cord-017363-dmb42kna 15 6 diagnostic diagnostic JJ cord-017363-dmb42kna 15 7 assay assay NN cord-017363-dmb42kna 15 8 must must MD cord-017363-dmb42kna 15 9 be be VB cord-017363-dmb42kna 15 10 able able JJ cord-017363-dmb42kna 15 11 to to TO cord-017363-dmb42kna 15 12 differentiate differentiate VB cord-017363-dmb42kna 15 13 it -PRON- PRP cord-017363-dmb42kna 15 14 from from IN cord-017363-dmb42kna 15 15 porcine porcine JJ cord-017363-dmb42kna 15 16 respiratory respiratory JJ cord-017363-dmb42kna 15 17 coronavirus coronavirus NN cord-017363-dmb42kna 15 18 ( ( -LRB- cord-017363-dmb42kna 15 19 PRCV PRCV NNP cord-017363-dmb42kna 15 20 ) ) -RRB- cord-017363-dmb42kna 15 21 , , , cord-017363-dmb42kna 15 22 a a DT cord-017363-dmb42kna 15 23 natural natural JJ cord-017363-dmb42kna 15 24 mutant mutant NN cord-017363-dmb42kna 15 25 of of IN cord-017363-dmb42kna 15 26 TGEV TGEV NNP cord-017363-dmb42kna 15 27 with with IN cord-017363-dmb42kna 15 28 truncated truncated JJ cord-017363-dmb42kna 15 29 spike spike NN cord-017363-dmb42kna 15 30 protein protein NN cord-017363-dmb42kna 15 31 and and CC cord-017363-dmb42kna 15 32 altered altered JJ cord-017363-dmb42kna 15 33 cell cell NN cord-017363-dmb42kna 15 34 tropism tropism NN cord-017363-dmb42kna 15 35 towards towards IN cord-017363-dmb42kna 15 36 respiratory respiratory JJ cord-017363-dmb42kna 15 37 epithelial epithelial JJ cord-017363-dmb42kna 15 38 cells cell NNS cord-017363-dmb42kna 15 39 [ [ -LRB- cord-017363-dmb42kna 15 40 3 3 CD cord-017363-dmb42kna 15 41 ] ] -RRB- cord-017363-dmb42kna 15 42 . . . cord-017363-dmb42kna 16 1 PRCV PRCV NNP cord-017363-dmb42kna 16 2 mostly mostly RB cord-017363-dmb42kna 16 3 causes cause VBZ cord-017363-dmb42kna 16 4 mild mild JJ cord-017363-dmb42kna 16 5 or or CC cord-017363-dmb42kna 16 6 subclinical subclinical JJ cord-017363-dmb42kna 16 7 respiratory respiratory JJ cord-017363-dmb42kna 16 8 disease disease NN cord-017363-dmb42kna 16 9 . . . cord-017363-dmb42kna 17 1 However however RB cord-017363-dmb42kna 17 2 , , , cord-017363-dmb42kna 17 3 in in IN cord-017363-dmb42kna 17 4 some some DT cord-017363-dmb42kna 17 5 PRCV PRCV NNP cord-017363-dmb42kna 17 6 - - HYPH cord-017363-dmb42kna 17 7 infected infect VBN cord-017363-dmb42kna 17 8 pigs pig NNS cord-017363-dmb42kna 17 9 , , , cord-017363-dmb42kna 17 10 the the DT cord-017363-dmb42kna 17 11 virus virus NN cord-017363-dmb42kna 17 12 can can MD cord-017363-dmb42kna 17 13 be be VB cord-017363-dmb42kna 17 14 shed shed VBN cord-017363-dmb42kna 17 15 in in IN cord-017363-dmb42kna 17 16 the the DT cord-017363-dmb42kna 17 17 feces fece NNS cord-017363-dmb42kna 17 18 [ [ -LRB- cord-017363-dmb42kna 17 19 4 4 CD cord-017363-dmb42kna 17 20 ] ] -RRB- cord-017363-dmb42kna 17 21 . . . cord-017363-dmb42kna 18 1 Realtime Realtime NNP cord-017363-dmb42kna 18 2 PCR PCR NNP cord-017363-dmb42kna 18 3 -based -base VBN cord-017363-dmb42kna 18 4 assays assay NNS cord-017363-dmb42kna 18 5 are be VBP cord-017363-dmb42kna 18 6 well well RB cord-017363-dmb42kna 18 7 suited suited JJ cord-017363-dmb42kna 18 8 for for IN cord-017363-dmb42kna 18 9 rapid rapid JJ cord-017363-dmb42kna 18 10 , , , cord-017363-dmb42kna 18 11 specifi specifi NNP cord-017363-dmb42kna 18 12 c c NN cord-017363-dmb42kna 18 13 , , , cord-017363-dmb42kna 18 14 and and CC cord-017363-dmb42kna 18 15 sensitive sensitive JJ cord-017363-dmb42kna 18 16 detection detection NN cord-017363-dmb42kna 18 17 of of IN cord-017363-dmb42kna 18 18 viruses virus NNS cord-017363-dmb42kna 18 19 such such JJ cord-017363-dmb42kna 18 20 as as IN cord-017363-dmb42kna 18 21 TGEV TGEV NNP cord-017363-dmb42kna 18 22 . . . cord-017363-dmb42kna 19 1 The the DT cord-017363-dmb42kna 19 2 real real JJ cord-017363-dmb42kna 19 3 - - HYPH cord-017363-dmb42kna 19 4 time time NN cord-017363-dmb42kna 19 5 RT RT NNP cord-017363-dmb42kna 19 6 - - HYPH cord-017363-dmb42kna 19 7 PCR PCR NNP cord-017363-dmb42kna 19 8 assay assay NN cord-017363-dmb42kna 19 9 described describe VBN cord-017363-dmb42kna 19 10 here here RB cord-017363-dmb42kna 19 11 is be VBZ cord-017363-dmb42kna 19 12 based base VBN cord-017363-dmb42kna 19 13 on on IN cord-017363-dmb42kna 19 14 amplifi amplifi NNP cord-017363-dmb42kna 19 15 cation cation NN cord-017363-dmb42kna 19 16 of of IN cord-017363-dmb42kna 19 17 a a DT cord-017363-dmb42kna 19 18 conserved conserved JJ cord-017363-dmb42kna 19 19 region region NN cord-017363-dmb42kna 19 20 of of IN cord-017363-dmb42kna 19 21 the the DT cord-017363-dmb42kna 19 22 spike spike NN cord-017363-dmb42kna 19 23 protein protein NN cord-017363-dmb42kna 19 24 gene gene NN cord-017363-dmb42kna 19 25 of of IN cord-017363-dmb42kna 19 26 TGEV TGEV NNP cord-017363-dmb42kna 19 27 strains strain NNS cord-017363-dmb42kna 19 28 and and CC cord-017363-dmb42kna 19 29 detection detection NN cord-017363-dmb42kna 19 30 of of IN cord-017363-dmb42kna 19 31 the the DT cord-017363-dmb42kna 19 32 amplifi amplifi NNP cord-017363-dmb42kna 19 33 ed ed NNP cord-017363-dmb42kna 19 34 products product NNS cord-017363-dmb42kna 19 35 using use VBG cord-017363-dmb42kna 19 36 a a DT cord-017363-dmb42kna 19 37 TaqMan TaqMan NNP cord-017363-dmb42kna 19 38 probe probe NN cord-017363-dmb42kna 19 39 [ [ -LRB- cord-017363-dmb42kna 19 40 5 5 CD cord-017363-dmb42kna 19 41 ] ] -RRB- cord-017363-dmb42kna 19 42 . . . cord-017363-dmb42kna 20 1 The the DT cord-017363-dmb42kna 20 2 assay assay NN cord-017363-dmb42kna 20 3 , , , cord-017363-dmb42kna 20 4 along along IN cord-017363-dmb42kna 20 5 with with IN cord-017363-dmb42kna 20 6 the the DT cord-017363-dmb42kna 20 7 RNA RNA NNP cord-017363-dmb42kna 20 8 extraction extraction NN cord-017363-dmb42kna 20 9 method method NN cord-017363-dmb42kna 20 10 described describe VBN cord-017363-dmb42kna 20 11 here here RB cord-017363-dmb42kna 20 12 , , , cord-017363-dmb42kna 20 13 can can MD cord-017363-dmb42kna 20 14 be be VB cord-017363-dmb42kna 20 15 established establish VBN cord-017363-dmb42kna 20 16 in in IN cord-017363-dmb42kna 20 17 any any DT cord-017363-dmb42kna 20 18 molecular molecular JJ cord-017363-dmb42kna 20 19 diagnostic diagnostic JJ cord-017363-dmb42kna 20 20 laboratory laboratory NN cord-017363-dmb42kna 20 21 for for IN cord-017363-dmb42kna 20 22 detection detection NN cord-017363-dmb42kna 20 23 of of IN cord-017363-dmb42kna 20 24 TGEV TGEV NNP cord-017363-dmb42kna 20 25 in in IN cord-017363-dmb42kna 20 26 pig pig NN cord-017363-dmb42kna 20 27 fecal fecal NN cord-017363-dmb42kna 20 28 samples sample NNS cord-017363-dmb42kna 20 29 [ [ -LRB- cord-017363-dmb42kna 20 30 6 6 CD cord-017363-dmb42kna 20 31 -8 -8 NNPS cord-017363-dmb42kna 20 32 ] ] -RRB- cord-017363-dmb42kna 20 33 . . . cord-017363-dmb42kna 21 1 Preventing prevent VBG cord-017363-dmb42kna 21 2 contamination contamination NN cord-017363-dmb42kna 21 3 of of IN cord-017363-dmb42kna 21 4 samples sample NNS cord-017363-dmb42kna 21 5 and and CC cord-017363-dmb42kna 21 6 reagents reagent NNS cord-017363-dmb42kna 21 7 with with IN cord-017363-dmb42kna 21 8 nucleic nucleic JJ cord-017363-dmb42kna 21 9 acids acid NNS cord-017363-dmb42kna 21 10 and and CC cord-017363-dmb42kna 21 11 nucleases nuclease NNS cord-017363-dmb42kna 21 12 is be VBZ cord-017363-dmb42kna 21 13 critical critical JJ cord-017363-dmb42kna 21 14 to to IN cord-017363-dmb42kna 21 15 obtaining obtain VBG cord-017363-dmb42kna 21 16 accurate accurate JJ cord-017363-dmb42kna 21 17 and and CC cord-017363-dmb42kna 21 18 reproducible reproducible JJ cord-017363-dmb42kna 21 19 results result NNS cord-017363-dmb42kna 21 20 with with IN cord-017363-dmb42kna 21 21 any any DT cord-017363-dmb42kna 21 22 PCR PCR NNP cord-017363-dmb42kna 21 23 -based -base VBN cord-017363-dmb42kna 21 24 diagnostic diagnostic JJ cord-017363-dmb42kna 21 25 assay assay NN cord-017363-dmb42kna 21 26 . . . cord-017363-dmb42kna 22 1 It -PRON- PRP cord-017363-dmb42kna 22 2 is be VBZ cord-017363-dmb42kna 22 3 recommended recommend VBN cord-017363-dmb42kna 22 4 that that IN cord-017363-dmb42kna 22 5 the the DT cord-017363-dmb42kna 22 6 nucleic nucleic JJ cord-017363-dmb42kna 22 7 acid acid NN cord-017363-dmb42kna 22 8 extraction extraction NN cord-017363-dmb42kna 22 9 , , , cord-017363-dmb42kna 22 10 preparation preparation NN cord-017363-dmb42kna 22 11 of of IN cord-017363-dmb42kna 22 12 master master NN cord-017363-dmb42kna 22 13 mix mix NN cord-017363-dmb42kna 22 14 , , , cord-017363-dmb42kna 22 15 and and CC cord-017363-dmb42kna 22 16 real real JJ cord-017363-dmb42kna 22 17 - - HYPH cord-017363-dmb42kna 22 18 time time NN cord-017363-dmb42kna 22 19 PCR PCR NNP cord-017363-dmb42kna 22 20 amplifi amplifi NNP cord-017363-dmb42kna 22 21 cation cation NN cord-017363-dmb42kna 22 22 are be VBP cord-017363-dmb42kna 22 23 performed perform VBN cord-017363-dmb42kna 22 24 in in IN cord-017363-dmb42kna 22 25 three three CD cord-017363-dmb42kna 22 26 physically physically RB cord-017363-dmb42kna 22 27 separated separate VBN cord-017363-dmb42kna 22 28 areas area NNS cord-017363-dmb42kna 22 29 . . . cord-017363-dmb42kna 23 1 Each each DT cord-017363-dmb42kna 23 2 of of IN cord-017363-dmb42kna 23 3 these these DT cord-017363-dmb42kna 23 4 areas area NNS cord-017363-dmb42kna 23 5 should should MD cord-017363-dmb42kna 23 6 have have VB cord-017363-dmb42kna 23 7 separate separate JJ cord-017363-dmb42kna 23 8 set set NN cord-017363-dmb42kna 23 9 of of IN cord-017363-dmb42kna 23 10 laboratory laboratory NN cord-017363-dmb42kna 23 11 instruments instrument NNS cord-017363-dmb42kna 23 12 and and CC cord-017363-dmb42kna 23 13 supplies supply NNS cord-017363-dmb42kna 23 14 that that WDT cord-017363-dmb42kna 23 15 are be VBP cord-017363-dmb42kna 23 16 to to TO cord-017363-dmb42kna 23 17 be be VB cord-017363-dmb42kna 23 18 used use VBN cord-017363-dmb42kna 23 19 only only RB cord-017363-dmb42kna 23 20 in in IN cord-017363-dmb42kna 23 21 their -PRON- PRP$ cord-017363-dmb42kna 23 22 assigned assign VBN cord-017363-dmb42kna 23 23 location location NN cord-017363-dmb42kna 23 24 [ [ -LRB- cord-017363-dmb42kna 23 25 9 9 CD cord-017363-dmb42kna 23 26 ] ] -RRB- cord-017363-dmb42kna 23 27 . . . cord-017363-dmb42kna 24 1 Including include VBG cord-017363-dmb42kna 24 2 a a DT cord-017363-dmb42kna 24 3 positive positive JJ cord-017363-dmb42kna 24 4 extraction extraction NN cord-017363-dmb42kna 24 5 control control NN cord-017363-dmb42kna 24 6 and and CC cord-017363-dmb42kna 24 7 a a DT cord-017363-dmb42kna 24 8 negative negative JJ cord-017363-dmb42kna 24 9 extraction extraction NN cord-017363-dmb42kna 24 10 control control NN cord-017363-dmb42kna 24 11 along along IN cord-017363-dmb42kna 24 12 with with IN cord-017363-dmb42kna 24 13 each each DT cord-017363-dmb42kna 24 14 batch batch NN cord-017363-dmb42kna 24 15 of of IN cord-017363-dmb42kna 24 16 clinical clinical JJ cord-017363-dmb42kna 24 17 samples sample NNS cord-017363-dmb42kna 24 18 is be VBZ cord-017363-dmb42kna 24 19 recommended recommend VBN cord-017363-dmb42kna 24 20 to to TO cord-017363-dmb42kna 24 21 monitor monitor VB cord-017363-dmb42kna 24 22 the the DT cord-017363-dmb42kna 24 23 effi effi NNP cord-017363-dmb42kna 24 24 ciency ciency NNP cord-017363-dmb42kna 24 25 of of IN cord-017363-dmb42kna 24 26 RNA RNA NNP cord-017363-dmb42kna 24 27 extraction extraction NN cord-017363-dmb42kna 24 28 and and CC cord-017363-dmb42kna 24 29 potential potential JJ cord-017363-dmb42kna 24 30 cross cross NN cord-017363-dmb42kna 24 31 contamination contamination NN cord-017363-dmb42kna 24 32 of of IN cord-017363-dmb42kna 24 33 the the DT cord-017363-dmb42kna 24 34 samples sample NNS cord-017363-dmb42kna 24 35 [ [ -LRB- cord-017363-dmb42kna 24 36 9 9 CD cord-017363-dmb42kna 24 37 ] ] -RRB- cord-017363-dmb42kna 24 38 . . . cord-017363-dmb42kna 25 1 PCR PCR NNP cord-017363-dmb42kna 25 2 inhibitors inhibitor NNS cord-017363-dmb42kna 25 3 are be VBP cord-017363-dmb42kna 25 4 often often RB cord-017363-dmb42kna 25 5 co co VBN cord-017363-dmb42kna 25 6 - - VBN cord-017363-dmb42kna 25 7 extracted extract VBN cord-017363-dmb42kna 25 8 with with IN cord-017363-dmb42kna 25 9 nucleic nucleic JJ cord-017363-dmb42kna 25 10 acids acid NNS cord-017363-dmb42kna 25 11 from from IN cord-017363-dmb42kna 25 12 fecal fecal JJ cord-017363-dmb42kna 25 13 samples sample NNS cord-017363-dmb42kna 25 14 . . . cord-017363-dmb42kna 26 1 In in IN cord-017363-dmb42kna 26 2 our -PRON- PRP$ cord-017363-dmb42kna 26 3 experience experience NN cord-017363-dmb42kna 26 4 , , , cord-017363-dmb42kna 26 5 RNA RNA NNP cord-017363-dmb42kna 26 6 extracted extract VBD cord-017363-dmb42kna 26 7 from from IN cord-017363-dmb42kna 26 8 pig pig NN cord-017363-dmb42kna 26 9 fecal fecal NN cord-017363-dmb42kna 26 10 samples sample NNS cord-017363-dmb42kna 26 11 using use VBG cord-017363-dmb42kna 26 12 the the DT cord-017363-dmb42kna 26 13 following following JJ cord-017363-dmb42kna 26 14 method method NN cord-017363-dmb42kna 26 15 is be VBZ cord-017363-dmb42kna 26 16 suitable suitable JJ cord-017363-dmb42kna 26 17 for for IN cord-017363-dmb42kna 26 18 TGEV TGEV NNP cord-017363-dmb42kna 26 19 detection detection NN cord-017363-dmb42kna 26 20 using use VBG cord-017363-dmb42kna 26 21 the the DT cord-017363-dmb42kna 26 22 real real JJ cord-017363-dmb42kna 26 23 - - HYPH cord-017363-dmb42kna 26 24 time time NN cord-017363-dmb42kna 26 25 RT RT NNP cord-017363-dmb42kna 26 26 - - HYPH cord-017363-dmb42kna 26 27 PCR PCR NNP cord-017363-dmb42kna 26 28 assay assay NN cord-017363-dmb42kna 26 29 . . . cord-017363-dmb42kna 27 1 Other other JJ cord-017363-dmb42kna 27 2 extraction extraction NN cord-017363-dmb42kna 27 3 methods method NNS cord-017363-dmb42kna 27 4 that that WDT cord-017363-dmb42kna 27 5 produce produce VBP cord-017363-dmb42kna 27 6 PCR PCR NNP cord-017363-dmb42kna 27 7 inhibitor inhibitor NN cord-017363-dmb42kna 27 8 - - HYPH cord-017363-dmb42kna 27 9 free free JJ cord-017363-dmb42kna 27 10 RNA RNA NNP cord-017363-dmb42kna 27 11 can can MD cord-017363-dmb42kna 27 12 also also RB cord-017363-dmb42kna 27 13 be be VB cord-017363-dmb42kna 27 14 used use VBN cord-017363-dmb42kna 27 15 ( ( -LRB- cord-017363-dmb42kna 27 16 see see VB cord-017363-dmb42kna 27 17 Note Note NNP cord-017363-dmb42kna 27 18 1 1 CD cord-017363-dmb42kna 27 19 ) ) -RRB- cord-017363-dmb42kna 27 20 . . . cord-017363-dmb42kna 28 1 The the DT cord-017363-dmb42kna 28 2 presence presence NN cord-017363-dmb42kna 28 3 of of IN cord-017363-dmb42kna 28 4 PCR PCR NNP cord-017363-dmb42kna 28 5 inhibitors inhibitor NNS cord-017363-dmb42kna 28 6 in in IN cord-017363-dmb42kna 28 7 the the DT cord-017363-dmb42kna 28 8 extracted extract VBN cord-017363-dmb42kna 28 9 can can MD cord-017363-dmb42kna 28 10 be be VB cord-017363-dmb42kna 28 11 monitored monitor VBN cord-017363-dmb42kna 28 12 by by IN cord-017363-dmb42kna 28 13 using use VBG cord-017363-dmb42kna 28 14 an an DT cord-017363-dmb42kna 28 15 internal internal JJ cord-017363-dmb42kna 28 16 control control NN cord-017363-dmb42kna 28 17 ( ( -LRB- cord-017363-dmb42kna 28 18 see see VB cord-017363-dmb42kna 28 19 Note Note NNP cord-017363-dmb42kna 28 20 2 2 CD cord-017363-dmb42kna 28 21 ) ) -RRB- cord-017363-dmb42kna 28 22 . . . cord-017363-dmb42kna 29 1 1 1 LS cord-017363-dmb42kna 29 2 . . . cord-017363-dmb42kna 30 1 Prepare prepare VB cord-017363-dmb42kna 30 2 a a DT cord-017363-dmb42kna 30 3 20 20 CD cord-017363-dmb42kna 30 4 % % NN cord-017363-dmb42kna 30 5 ( ( -LRB- cord-017363-dmb42kna 30 6 w w NN cord-017363-dmb42kna 30 7 / / SYM cord-017363-dmb42kna 30 8 v v NN cord-017363-dmb42kna 30 9 ) ) -RRB- cord-017363-dmb42kna 30 10 suspension suspension NN cord-017363-dmb42kna 30 11 of of IN cord-017363-dmb42kna 30 12 feces fece NNS cord-017363-dmb42kna 30 13 in in IN cord-017363-dmb42kna 30 14 DNase DNase NNP cord-017363-dmb42kna 30 15 / / SYM cord-017363-dmb42kna 30 16 RNasefree RNasefree NNP cord-017363-dmb42kna 30 17 distilled distilled JJ cord-017363-dmb42kna 30 18 water water NN cord-017363-dmb42kna 30 19 . . . cord-017363-dmb42kna 31 1 Feces fece NNS cord-017363-dmb42kna 31 2 in in IN cord-017363-dmb42kna 31 3 liquid liquid JJ cord-017363-dmb42kna 31 4 form form NN cord-017363-dmb42kna 31 5 can can MD cord-017363-dmb42kna 31 6 be be VB cord-017363-dmb42kna 31 7 used use VBN cord-017363-dmb42kna 31 8 directly directly RB cord-017363-dmb42kna 31 9 . . . cord-017363-dmb42kna 32 1 2 2 LS cord-017363-dmb42kna 32 2 . . . cord-017363-dmb42kna 33 1 Transfer transfer VB cord-017363-dmb42kna 33 2 250 250 CD cord-017363-dmb42kna 33 3 μl μl NN cord-017363-dmb42kna 33 4 of of IN cord-017363-dmb42kna 33 5 the the DT cord-017363-dmb42kna 33 6 fecal fecal JJ cord-017363-dmb42kna 33 7 suspension suspension NN cord-017363-dmb42kna 33 8 into into IN cord-017363-dmb42kna 33 9 a a DT cord-017363-dmb42kna 33 10 1.5 1.5 CD cord-017363-dmb42kna 33 11 ml ml NN cord-017363-dmb42kna 33 12 microcentrifuge microcentrifuge NN cord-017363-dmb42kna 33 13 tube tube NN cord-017363-dmb42kna 33 14 . . . cord-017363-dmb42kna 34 1 3 3 LS cord-017363-dmb42kna 34 2 . . . cord-017363-dmb42kna 35 1 Add add VB cord-017363-dmb42kna 35 2 750 750 CD cord-017363-dmb42kna 35 3 μl μl NN cord-017363-dmb42kna 35 4 of of IN cord-017363-dmb42kna 35 5 TRIzol TRIzol NNP cord-017363-dmb42kna 35 6 LS LS NNP cord-017363-dmb42kna 35 7 reagent reagent NN cord-017363-dmb42kna 35 8 , , , cord-017363-dmb42kna 35 9 briefl briefl NNP cord-017363-dmb42kna 35 10 y y NNP cord-017363-dmb42kna 35 11 vortex vortex VBP cord-017363-dmb42kna 35 12 the the DT cord-017363-dmb42kna 35 13 tube tube NN cord-017363-dmb42kna 35 14 for for IN cord-017363-dmb42kna 35 15 10 10 CD cord-017363-dmb42kna 35 16 s s NNS cord-017363-dmb42kna 35 17 , , , cord-017363-dmb42kna 35 18 and and CC cord-017363-dmb42kna 35 19 incubate incubate VB cord-017363-dmb42kna 35 20 at at IN cord-017363-dmb42kna 35 21 room room NN cord-017363-dmb42kna 35 22 temperature temperature NN cord-017363-dmb42kna 35 23 for for IN cord-017363-dmb42kna 35 24 5 5 CD cord-017363-dmb42kna 35 25 min min NN cord-017363-dmb42kna 35 26 . . . cord-017363-dmb42kna 36 1 4 4 LS cord-017363-dmb42kna 36 2 . . . cord-017363-dmb42kna 37 1 Add add VB cord-017363-dmb42kna 37 2 200 200 CD cord-017363-dmb42kna 37 3 μl μl NN cord-017363-dmb42kna 37 4 of of IN cord-017363-dmb42kna 37 5 chloroform chloroform NN cord-017363-dmb42kna 37 6 to to IN cord-017363-dmb42kna 37 7 the the DT cord-017363-dmb42kna 37 8 tube tube NN cord-017363-dmb42kna 37 9 . . . cord-017363-dmb42kna 38 1 Vortex vortex VB cord-017363-dmb42kna 38 2 the the DT cord-017363-dmb42kna 38 3 tube tube NN cord-017363-dmb42kna 38 4 for for IN cord-017363-dmb42kna 38 5 5 5 CD cord-017363-dmb42kna 38 6 s s NNS cord-017363-dmb42kna 38 7 and and CC cord-017363-dmb42kna 38 8 incubate incubate VB cord-017363-dmb42kna 38 9 at at IN cord-017363-dmb42kna 38 10 room room NN cord-017363-dmb42kna 38 11 temperature temperature NN cord-017363-dmb42kna 38 12 for for IN cord-017363-dmb42kna 38 13 3 3 CD cord-017363-dmb42kna 38 14 min min NN cord-017363-dmb42kna 38 15 . . NNP cord-017363-dmb42kna 38 16 5 5 CD cord-017363-dmb42kna 38 17 . . . cord-017363-dmb42kna 39 1 Centrifuge centrifuge VB cord-017363-dmb42kna 39 2 the the DT cord-017363-dmb42kna 39 3 tube tube NN cord-017363-dmb42kna 39 4 at at IN cord-017363-dmb42kna 39 5 12,000 12,000 CD cord-017363-dmb42kna 39 6 × × NN cord-017363-dmb42kna 39 7 g g NN cord-017363-dmb42kna 39 8 for for IN cord-017363-dmb42kna 39 9 10 10 CD cord-017363-dmb42kna 39 10 min min NN cord-017363-dmb42kna 39 11 . . . cord-017363-dmb42kna 40 1 11 11 CD cord-017363-dmb42kna 40 2 . . . cord-017363-dmb42kna 41 1 Repeat repeat VB cord-017363-dmb42kna 41 2 step step NN cord-017363-dmb42kna 41 3 10 10 CD cord-017363-dmb42kna 41 4 for for IN cord-017363-dmb42kna 41 5 a a DT cord-017363-dmb42kna 41 6 second second JJ cord-017363-dmb42kna 41 7 wash wash NN cord-017363-dmb42kna 41 8 of of IN cord-017363-dmb42kna 41 9 the the DT cord-017363-dmb42kna 41 10 spin spin NN cord-017363-dmb42kna 41 11 column column NN cord-017363-dmb42kna 41 12 with with IN cord-017363-dmb42kna 41 13 RPE RPE NNP cord-017363-dmb42kna 41 14 buffer buffer NN cord-017363-dmb42kna 41 15 . . . cord-017363-dmb42kna 42 1 12 12 CD cord-017363-dmb42kna 42 2 . . . cord-017363-dmb42kna 43 1 Place place VB cord-017363-dmb42kna 43 2 the the DT cord-017363-dmb42kna 43 3 spin spin NN cord-017363-dmb42kna 43 4 column column NN cord-017363-dmb42kna 43 5 into into IN cord-017363-dmb42kna 43 6 a a DT cord-017363-dmb42kna 43 7 new new JJ cord-017363-dmb42kna 43 8 collection collection NN cord-017363-dmb42kna 43 9 tube tube NN cord-017363-dmb42kna 43 10 and and CC cord-017363-dmb42kna 43 11 centrifuge centrifuge NN cord-017363-dmb42kna 43 12 at at IN cord-017363-dmb42kna 43 13 10,000 10,000 CD cord-017363-dmb42kna 43 14 × × NN cord-017363-dmb42kna 43 15 g g NN cord-017363-dmb42kna 43 16 for for IN cord-017363-dmb42kna 43 17 1 1 CD cord-017363-dmb42kna 43 18 min min NN cord-017363-dmb42kna 43 19 to to TO cord-017363-dmb42kna 43 20 dry dry VB cord-017363-dmb42kna 43 21 the the DT cord-017363-dmb42kna 43 22 membrane membrane NN cord-017363-dmb42kna 43 23 of of IN cord-017363-dmb42kna 43 24 the the DT cord-017363-dmb42kna 43 25 column column NN cord-017363-dmb42kna 43 26 . . . cord-017363-dmb42kna 44 1 13 13 CD cord-017363-dmb42kna 44 2 . . . cord-017363-dmb42kna 45 1 Place place VB cord-017363-dmb42kna 45 2 the the DT cord-017363-dmb42kna 45 3 spin spin NN cord-017363-dmb42kna 45 4 column column NN cord-017363-dmb42kna 45 5 in in IN cord-017363-dmb42kna 45 6 a a DT cord-017363-dmb42kna 45 7 1.5 1.5 CD cord-017363-dmb42kna 45 8 ml ml NN cord-017363-dmb42kna 45 9 microcentrifuge microcentrifuge NN cord-017363-dmb42kna 45 10 tube tube NN cord-017363-dmb42kna 45 11 and and CC cord-017363-dmb42kna 45 12 add add VB cord-017363-dmb42kna 45 13 30 30 CD cord-017363-dmb42kna 45 14 μl μl NN cord-017363-dmb42kna 45 15 of of IN cord-017363-dmb42kna 45 16 DNase DNase NNP cord-017363-dmb42kna 45 17 / / SYM cord-017363-dmb42kna 45 18 RNase rnase NN cord-017363-dmb42kna 45 19 - - HYPH cord-017363-dmb42kna 45 20 free free JJ cord-017363-dmb42kna 45 21 water water NN cord-017363-dmb42kna 45 22 to to IN cord-017363-dmb42kna 45 23 the the DT cord-017363-dmb42kna 45 24 column column NN cord-017363-dmb42kna 45 25 . . . cord-017363-dmb42kna 46 1 Incubate incubate VB cord-017363-dmb42kna 46 2 at at IN cord-017363-dmb42kna 46 3 room room NN cord-017363-dmb42kna 46 4 temperature temperature NN cord-017363-dmb42kna 46 5 for for IN cord-017363-dmb42kna 46 6 1 1 CD cord-017363-dmb42kna 46 7 min min NN cord-017363-dmb42kna 46 8 . . . cord-017363-dmb42kna 47 1 14 14 CD cord-017363-dmb42kna 47 2 . . . cord-017363-dmb42kna 48 1 Centrifuge centrifuge NN cord-017363-dmb42kna 48 2 at at IN cord-017363-dmb42kna 48 3 10,000 10,000 CD cord-017363-dmb42kna 48 4 × × NN cord-017363-dmb42kna 48 5 g g NN cord-017363-dmb42kna 48 6 for for IN cord-017363-dmb42kna 48 7 1 1 CD cord-017363-dmb42kna 48 8 min min NN cord-017363-dmb42kna 48 9 . . NNP cord-017363-dmb42kna 48 10 15 15 CD cord-017363-dmb42kna 48 11 . . . cord-017363-dmb42kna 49 1 Discard discard VB cord-017363-dmb42kna 49 2 the the DT cord-017363-dmb42kna 49 3 spin spin NN cord-017363-dmb42kna 49 4 column column NN cord-017363-dmb42kna 49 5 and and CC cord-017363-dmb42kna 49 6 store store VB cord-017363-dmb42kna 49 7 the the DT cord-017363-dmb42kna 49 8 eluted elute VBN cord-017363-dmb42kna 49 9 RNA RNA NNP cord-017363-dmb42kna 49 10 at at IN cord-017363-dmb42kna 49 11 4 4 CD cord-017363-dmb42kna 49 12 ° ° NN cord-017363-dmb42kna 49 13 C c NN cord-017363-dmb42kna 49 14 if if IN cord-017363-dmb42kna 49 15 it -PRON- PRP cord-017363-dmb42kna 49 16 is be VBZ cord-017363-dmb42kna 49 17 used use VBN cord-017363-dmb42kna 49 18 in in IN cord-017363-dmb42kna 49 19 the the DT cord-017363-dmb42kna 49 20 real real JJ cord-017363-dmb42kna 49 21 - - HYPH cord-017363-dmb42kna 49 22 time time NN cord-017363-dmb42kna 49 23 RT RT NNP cord-017363-dmb42kna 49 24 - - HYPH cord-017363-dmb42kna 49 25 PCR PCR NNP cord-017363-dmb42kna 49 26 assay assay NN cord-017363-dmb42kna 49 27 within within IN cord-017363-dmb42kna 49 28 12 12 CD cord-017363-dmb42kna 49 29 h h NN cord-017363-dmb42kna 49 30 or or CC cord-017363-dmb42kna 49 31 at at IN cord-017363-dmb42kna 49 32 −20 −20 NNP cord-017363-dmb42kna 49 33 ° ° NN cord-017363-dmb42kna 49 34 C C NNP cord-017363-dmb42kna 49 35 if if IN cord-017363-dmb42kna 49 36 it -PRON- PRP cord-017363-dmb42kna 49 37 is be VBZ cord-017363-dmb42kna 49 38 used use VBN cord-017363-dmb42kna 49 39 after after IN cord-017363-dmb42kna 49 40 12 12 CD cord-017363-dmb42kna 49 41 h h NN cord-017363-dmb42kna 49 42 ( ( -LRB- cord-017363-dmb42kna 49 43 see see VB cord-017363-dmb42kna 50 1 Note note NN cord-017363-dmb42kna 50 2 4 4 CD cord-017363-dmb42kna 50 3 ) ) -RRB- cord-017363-dmb42kna 50 4 . . . cord-017363-dmb42kna 51 1 1 1 LS cord-017363-dmb42kna 51 2 . . . cord-017363-dmb42kna 52 1 Turn turn VB cord-017363-dmb42kna 52 2 on on IN cord-017363-dmb42kna 52 3 the the DT cord-017363-dmb42kna 52 4 real real JJ cord-017363-dmb42kna 52 5 - - HYPH cord-017363-dmb42kna 52 6 time time NN cord-017363-dmb42kna 52 7 PCR PCR NNP cord-017363-dmb42kna 52 8 machine machine NN cord-017363-dmb42kna 52 9 . . . cord-017363-dmb42kna 53 1 Follow follow VB cord-017363-dmb42kna 53 2 the the DT cord-017363-dmb42kna 53 3 software software NN cord-017363-dmb42kna 53 4 directions direction NNS cord-017363-dmb42kna 53 5 of of IN cord-017363-dmb42kna 53 6 the the DT cord-017363-dmb42kna 53 7 machine machine NN cord-017363-dmb42kna 53 8 manufacturer manufacturer NN cord-017363-dmb42kna 53 9 to to IN cord-017363-dmb42kna 53 10 confi confi NNP cord-017363-dmb42kna 53 11 rm rm NNP cord-017363-dmb42kna 53 12 that that IN cord-017363-dmb42kna 53 13 the the DT cord-017363-dmb42kna 53 14 FAM FAM NNP cord-017363-dmb42kna 53 15 signal signal NN cord-017363-dmb42kna 53 16 data datum NNS cord-017363-dmb42kna 53 17 will will MD cord-017363-dmb42kna 53 18 be be VB cord-017363-dmb42kna 53 19 gathered gather VBN cord-017363-dmb42kna 53 20 during during IN cord-017363-dmb42kna 53 21 the the DT cord-017363-dmb42kna 53 22 amplifi amplifi NNP cord-017363-dmb42kna 53 23 cation cation NN cord-017363-dmb42kna 53 24 . . . cord-017363-dmb42kna 54 1 Program program VB cord-017363-dmb42kna 54 2 the the DT cord-017363-dmb42kna 54 3 thermal thermal JJ cord-017363-dmb42kna 54 4 cycle cycle NN cord-017363-dmb42kna 54 5 and and CC cord-017363-dmb42kna 54 6 data datum NNS cord-017363-dmb42kna 54 7 collection collection NN cord-017363-dmb42kna 54 8 conditions condition NNS cord-017363-dmb42kna 54 9 according accord VBG cord-017363-dmb42kna 54 10 to to IN cord-017363-dmb42kna 54 11 Table Table NNP cord-017363-dmb42kna 54 12 1 1 CD cord-017363-dmb42kna 54 13 . . CD cord-017363-dmb42kna 54 14 2 2 CD cord-017363-dmb42kna 54 15 . . . cord-017363-dmb42kna 55 1 Prepare prepare VB cord-017363-dmb42kna 55 2 a a DT cord-017363-dmb42kna 55 3 master master NN cord-017363-dmb42kna 55 4 mix mix VB cord-017363-dmb42kna 55 5 suffi suffi NNP cord-017363-dmb42kna 55 6 cient cient NNP cord-017363-dmb42kna 55 7 for for IN cord-017363-dmb42kna 55 8 the the DT cord-017363-dmb42kna 55 9 intended intend VBN cord-017363-dmb42kna 55 10 number number NN cord-017363-dmb42kna 55 11 of of IN cord-017363-dmb42kna 55 12 samples sample NNS cord-017363-dmb42kna 55 13 in in IN cord-017363-dmb42kna 55 14 a a DT cord-017363-dmb42kna 55 15 sterile sterile JJ cord-017363-dmb42kna 55 16 1.5 1.5 CD cord-017363-dmb42kna 55 17 ml ml NN cord-017363-dmb42kna 55 18 microcentrifuge microcentrifuge NN cord-017363-dmb42kna 55 19 tube tube NN cord-017363-dmb42kna 55 20 according accord VBG cord-017363-dmb42kna 55 21 to to IN cord-017363-dmb42kna 55 22 Table table NN cord-017363-dmb42kna 55 23 2 2 CD cord-017363-dmb42kna 55 24 . . . cord-017363-dmb42kna 56 1 Add add VB cord-017363-dmb42kna 56 2 at at IN cord-017363-dmb42kna 56 3 least least JJS cord-017363-dmb42kna 56 4 a a DT cord-017363-dmb42kna 56 5 no no DT cord-017363-dmb42kna 56 6 - - HYPH cord-017363-dmb42kna 56 7 template template NN cord-017363-dmb42kna 56 8 control control NN cord-017363-dmb42kna 56 9 ( ( -LRB- cord-017363-dmb42kna 56 10 NTC NTC NNP cord-017363-dmb42kna 56 11 ) ) -RRB- cord-017363-dmb42kna 56 12 and and CC cord-017363-dmb42kna 56 13 a a DT cord-017363-dmb42kna 56 14 positive positive JJ cord-017363-dmb42kna 56 15 amplifi amplifi NNP cord-017363-dmb42kna 56 16 cation cation NN cord-017363-dmb42kna 56 17 control control NN cord-017363-dmb42kna 56 18 ( ( -LRB- cord-017363-dmb42kna 56 19 PAC PAC NNP cord-017363-dmb42kna 56 20 ) ) -RRB- cord-017363-dmb42kna 56 21 to to IN cord-017363-dmb42kna 56 22 the the DT cord-017363-dmb42kna 56 23 number number NN cord-017363-dmb42kna 56 24 required require VBN cord-017363-dmb42kna 56 25 reactions reaction NNS cord-017363-dmb42kna 56 26 . . . cord-017363-dmb42kna 57 1 3 3 LS cord-017363-dmb42kna 57 2 . . . cord-017363-dmb42kna 58 1 Close close VB cord-017363-dmb42kna 58 2 the the DT cord-017363-dmb42kna 58 3 cap cap NN cord-017363-dmb42kna 58 4 of of IN cord-017363-dmb42kna 58 5 the the DT cord-017363-dmb42kna 58 6 microcentrifuge microcentrifuge NN cord-017363-dmb42kna 58 7 tube tube NN cord-017363-dmb42kna 58 8 . . . cord-017363-dmb42kna 59 1 Vortex vortex NN cord-017363-dmb42kna 59 2 and and CC cord-017363-dmb42kna 59 3 centrifuge centrifuge VB cord-017363-dmb42kna 59 4 the the DT cord-017363-dmb42kna 59 5 tube tube NN cord-017363-dmb42kna 59 6 briefl briefl NNP cord-017363-dmb42kna 60 1 y. y. NN cord-017363-dmb42kna 60 2 4 4 CD cord-017363-dmb42kna 60 3 . . . cord-017363-dmb42kna 61 1 Aliquot Aliquot NNP cord-017363-dmb42kna 61 2 20 20 CD cord-017363-dmb42kna 61 3 μl μl NN cord-017363-dmb42kna 61 4 of of IN cord-017363-dmb42kna 61 5 the the DT cord-017363-dmb42kna 61 6 master master NN cord-017363-dmb42kna 61 7 mix mix NN cord-017363-dmb42kna 61 8 into into IN cord-017363-dmb42kna 61 9 each each DT cord-017363-dmb42kna 61 10 PCR PCR NNP cord-017363-dmb42kna 61 11 reaction reaction NN cord-017363-dmb42kna 61 12 tube tube NN cord-017363-dmb42kna 61 13 . . . cord-017363-dmb42kna 62 1 Table table NN cord-017363-dmb42kna 62 2 1 1 CD cord-017363-dmb42kna 62 3 Thermal thermal JJ cord-017363-dmb42kna 62 4 cycling cycling NN cord-017363-dmb42kna 62 5 conditions condition NNS cord-017363-dmb42kna 62 6 Step step VBP cord-017363-dmb42kna 62 7 Temperature temperature NN cord-017363-dmb42kna 62 8 ( ( -LRB- cord-017363-dmb42kna 62 9 ° ° NN cord-017363-dmb42kna 62 10 C c NN cord-017363-dmb42kna 62 11 ) ) -RRB- cord-017363-dmb42kna 63 1 Time Time NNP cord-017363-dmb42kna 63 2 _SP cord-017363-dmb42kna 64 1 DNase DNase NNP cord-017363-dmb42kna 64 2 / / SYM cord-017363-dmb42kna 64 3 RNase rnase NN cord-017363-dmb42kna 64 4 - - HYPH cord-017363-dmb42kna 64 5 free free JJ cord-017363-dmb42kna 64 6 distilled distilled JJ cord-017363-dmb42kna 64 7 water water NN cord-017363-dmb42kna 64 8 Feces fece NNS cord-017363-dmb42kna 64 9 samples sample NNS cord-017363-dmb42kna 64 10 from from IN cord-017363-dmb42kna 64 11 suspected suspect VBN cord-017363-dmb42kna 64 12 pigs pig NNS cord-017363-dmb42kna 64 13 RNasin RNasin NNP cord-017363-dmb42kna 64 14 Ribonuclease Ribonuclease NNP cord-017363-dmb42kna 64 15 Inhibitor Inhibitor NNP cord-017363-dmb42kna 64 16 ( ( -LRB- cord-017363-dmb42kna 64 17 Promega Promega NNP cord-017363-dmb42kna 64 18 ) ) -RRB- cord-017363-dmb42kna 64 19 or or CC cord-017363-dmb42kna 64 20 equivalent equivalent JJ cord-017363-dmb42kna 64 21 mM mm CD cord-017363-dmb42kna 64 22 MgCl MgCl NNP cord-017363-dmb42kna 64 23 2 2 CD cord-017363-dmb42kna 64 24 solution solution NN cord-017363-dmb42kna 64 25 for for IN cord-017363-dmb42kna 64 26 PCR PCR NNP cord-017363-dmb42kna 64 27 ( ( -LRB- cord-017363-dmb42kna 64 28 Sigma Sigma NNP cord-017363-dmb42kna 64 29 - - HYPH cord-017363-dmb42kna 64 30 Aldrich Aldrich NNP cord-017363-dmb42kna 64 31 ) ) -RRB- cord-017363-dmb42kna 64 32 or or CC cord-017363-dmb42kna 64 33 equivalent equivalent JJ cord-017363-dmb42kna 64 34 DNase DNase NNP cord-017363-dmb42kna 64 35 / / SYM cord-017363-dmb42kna 64 36 RNase rnase NN cord-017363-dmb42kna 64 37 - - HYPH cord-017363-dmb42kna 64 38 free free JJ cord-017363-dmb42kna 64 39 distilled distilled JJ cord-017363-dmb42kna 64 40 water water NN cord-017363-dmb42kna 65 1 μM μM NNP cord-017363-dmb42kna 66 1 Forward forward JJ cord-017363-dmb42kna 66 2 primer primer NN cord-017363-dmb42kna 66 3 CCA(BHQ1)-3′(FAM CCA(BHQ1)-3′(FAM NNP cord-017363-dmb42kna 66 4 , , , cord-017363-dmb42kna 66 5 6-carboxyfl 6-carboxyfl CD cord-017363-dmb42kna 66 6 uorescein uorescein NN cord-017363-dmb42kna 66 7 ; ; : cord-017363-dmb42kna 66 8 BHQ1 BHQ1 NNP cord-017363-dmb42kna 66 9 , , , cord-017363-dmb42kna 66 10 black black JJ cord-017363-dmb42kna 66 11 hole hole NN cord-017363-dmb42kna 66 12 quencher quencher NN cord-017363-dmb42kna 66 13 1 1 CD cord-017363-dmb42kna 66 14 ; ; : cord-017363-dmb42kna 67 1 Eurofi Eurofi NNP cord-017363-dmb42kna 67 2 ns ns IN cord-017363-dmb42kna 67 3 MWG MWG NNP cord-017363-dmb42kna 67 4 Operon Operon NNP cord-017363-dmb42kna 67 5 ) ) -RRB- cord-017363-dmb42kna 68 1 Real real JJ cord-017363-dmb42kna 68 2 - - HYPH cord-017363-dmb42kna 68 3 time time NN cord-017363-dmb42kna 68 4 PCR PCR NNP cord-017363-dmb42kna 68 5 machine machine NN cord-017363-dmb42kna 68 6 , , , cord-017363-dmb42kna 68 7 such such JJ cord-017363-dmb42kna 68 8 as as IN cord-017363-dmb42kna 68 9 Smart Smart NNP cord-017363-dmb42kna 68 10 Cycler Cycler NNP cord-017363-dmb42kna 68 11 II II NNP cord-017363-dmb42kna 68 12 ( ( -LRB- cord-017363-dmb42kna 68 13 Cepheid Cepheid NNP cord-017363-dmb42kna 68 14 ) ) -RRB- cord-017363-dmb42kna 68 15 , , . cord-017363-dmb42kna 69 1 7300 7300 CD cord-017363-dmb42kna 69 2 Real real JJ cord-017363-dmb42kna 69 3 - - HYPH cord-017363-dmb42kna 69 4 Time time NN cord-017363-dmb42kna 69 5 PCR pcr NN cord-017363-dmb42kna 69 6 System system NN cord-017363-dmb42kna 69 7 ( ( -LRB- cord-017363-dmb42kna 69 8 Applied Applied NNP cord-017363-dmb42kna 69 9 Biosystems Biosystems NNP cord-017363-dmb42kna 69 10 ) ) -RRB- cord-017363-dmb42kna 69 11 , , , cord-017363-dmb42kna 69 12 or or CC cord-017363-dmb42kna 69 13 equivalent equivalent JJ cord-017363-dmb42kna 69 14 PCR PCR NNP cord-017363-dmb42kna 69 15 reaction reaction NN cord-017363-dmb42kna 69 16 tubes tube NNS cord-017363-dmb42kna 69 17 suitable suitable JJ cord-017363-dmb42kna 69 18 for for IN cord-017363-dmb42kna 69 19 the the DT cord-017363-dmb42kna 69 20 real real JJ cord-017363-dmb42kna 69 21 - - HYPH cord-017363-dmb42kna 69 22 time time NN cord-017363-dmb42kna 69 23 PCR PCR NNP cord-017363-dmb42kna 69 24 machine machine NN cord-017363-dmb42kna 69 25 platform platform NN cord-017363-dmb42kna 69 26 Transmissible transmissible JJ cord-017363-dmb42kna 69 27 gastroenteritis gastroenteritis NN cord-017363-dmb42kna 69 28 Immunity immunity NN cord-017363-dmb42kna 69 29 to to IN cord-017363-dmb42kna 69 30 transmissible transmissible JJ cord-017363-dmb42kna 69 31 gastroenteritis gastroenteritis NN cord-017363-dmb42kna 69 32 virus virus NN cord-017363-dmb42kna 69 33 and and CC cord-017363-dmb42kna 69 34 porcine porcine JJ cord-017363-dmb42kna 69 35 respiratory respiratory JJ cord-017363-dmb42kna 69 36 coronavirus coronavirus NN cord-017363-dmb42kna 69 37 infections infection NNS cord-017363-dmb42kna 69 38 in in IN cord-017363-dmb42kna 69 39 swine swine NN cord-017363-dmb42kna 69 40 Porcine porcine JJ cord-017363-dmb42kna 69 41 respiratory respiratory JJ cord-017363-dmb42kna 69 42 coronavirus coronavirus NN cord-017363-dmb42kna 69 43 differs differ VBZ cord-017363-dmb42kna 69 44 from from IN cord-017363-dmb42kna 69 45 transmissible transmissible JJ cord-017363-dmb42kna 69 46 gastroenteritis gastroenteritis NN cord-017363-dmb42kna 69 47 virus virus NN cord-017363-dmb42kna 69 48 by by IN cord-017363-dmb42kna 69 49 a a DT cord-017363-dmb42kna 69 50 few few JJ cord-017363-dmb42kna 69 51 genomic genomic JJ cord-017363-dmb42kna 69 52 deletions deletion NNS cord-017363-dmb42kna 69 53 Respiratory respiratory JJ cord-017363-dmb42kna 69 54 and and CC cord-017363-dmb42kna 69 55 fecal fecal JJ cord-017363-dmb42kna 69 56 shedding shedding NN cord-017363-dmb42kna 69 57 of of IN cord-017363-dmb42kna 69 58 porcine porcine JJ cord-017363-dmb42kna 69 59 respiratory respiratory JJ cord-017363-dmb42kna 69 60 coronavirus coronavirus NN cord-017363-dmb42kna 69 61 ( ( -LRB- cord-017363-dmb42kna 69 62 PRCV PRCV NNP cord-017363-dmb42kna 69 63 ) ) -RRB- cord-017363-dmb42kna 70 1 in in IN cord-017363-dmb42kna 70 2 sentinel sentinel NN cord-017363-dmb42kna 70 3 weaned wean VBD cord-017363-dmb42kna 70 4 pigs pig NNS cord-017363-dmb42kna 70 5 and and CC cord-017363-dmb42kna 70 6 sequence sequence NN cord-017363-dmb42kna 70 7 of of IN cord-017363-dmb42kna 70 8 the the DT cord-017363-dmb42kna 70 9 partial partial JJ cord-017363-dmb42kna 70 10 S s NN cord-017363-dmb42kna 70 11 - - HYPH cord-017363-dmb42kna 70 12 gene gene NN cord-017363-dmb42kna 70 13 of of IN cord-017363-dmb42kna 70 14 the the DT cord-017363-dmb42kna 70 15 PRCV PRCV NNP cord-017363-dmb42kna 70 16 isolates isolate VBZ cord-017363-dmb42kna 71 1 A a DT cord-017363-dmb42kna 71 2 real real JJ cord-017363-dmb42kna 71 3 - - HYPH cord-017363-dmb42kna 71 4 time time NN cord-017363-dmb42kna 71 5 TaqMan TaqMan NNP cord-017363-dmb42kna 71 6 ® ® HYPH cord-017363-dmb42kna 71 7 RT RT NNP cord-017363-dmb42kna 71 8 - - HYPH cord-017363-dmb42kna 71 9 PCR PCR NNP cord-017363-dmb42kna 71 10 assay assay NN cord-017363-dmb42kna 71 11 with with IN cord-017363-dmb42kna 71 12 an an DT cord-017363-dmb42kna 71 13 internal internal JJ cord-017363-dmb42kna 71 14 amplifi amplifi NNP cord-017363-dmb42kna 71 15 cation cation NN cord-017363-dmb42kna 71 16 control control NN cord-017363-dmb42kna 71 17 for for IN cord-017363-dmb42kna 71 18 rapid rapid JJ cord-017363-dmb42kna 71 19 detection detection NN cord-017363-dmb42kna 71 20 of of IN cord-017363-dmb42kna 71 21 transmissible transmissible JJ cord-017363-dmb42kna 71 22 gastroenteritis gastroenteritis JJ cord-017363-dmb42kna 71 23 virus virus NN cord-017363-dmb42kna 71 24 in in IN cord-017363-dmb42kna 71 25 swine swine NN cord-017363-dmb42kna 71 26 fecal fecal JJ cord-017363-dmb42kna 71 27 samples sample NNS cord-017363-dmb42kna 72 1 Attempted attempt VBN cord-017363-dmb42kna 72 2 experimental experimental JJ cord-017363-dmb42kna 72 3 reproduction reproduction NN cord-017363-dmb42kna 72 4 of of IN cord-017363-dmb42kna 72 5 porcine porcine JJ cord-017363-dmb42kna 72 6 periweaning periweaning NN cord-017363-dmb42kna 72 7 - - HYPH cord-017363-dmb42kna 72 8 failure failure NN cord-017363-dmb42kna 72 9 - - HYPH cord-017363-dmb42kna 72 10 to to TO cord-017363-dmb42kna 72 11 - - HYPH cord-017363-dmb42kna 72 12 thrive thrive VB cord-017363-dmb42kna 72 13 syndrome syndrome NN cord-017363-dmb42kna 72 14 using use VBG cord-017363-dmb42kna 72 15 tissue tissue NN cord-017363-dmb42kna 72 16 homogenates homogenate NNS cord-017363-dmb42kna 73 1 The the DT cord-017363-dmb42kna 73 2 fi fi NN cord-017363-dmb42kna 73 3 rst rst NN cord-017363-dmb42kna 73 4 case case NN cord-017363-dmb42kna 73 5 of of IN cord-017363-dmb42kna 73 6 porcine porcine JJ cord-017363-dmb42kna 73 7 epidemic epidemic NN cord-017363-dmb42kna 73 8 diarrhea diarrhea NN cord-017363-dmb42kna 73 9 in in IN cord-017363-dmb42kna 73 10 Canada Canada NNP cord-017363-dmb42kna 74 1 A a DT cord-017363-dmb42kna 74 2 novel novel JJ cord-017363-dmb42kna 74 3 watery watery JJ cord-017363-dmb42kna 74 4 diarrhea diarrhea NN cord-017363-dmb42kna 74 5 caused cause VBN cord-017363-dmb42kna 74 6 by by IN cord-017363-dmb42kna 74 7 the the DT cord-017363-dmb42kna 74 8 co co NN cord-017363-dmb42kna 74 9 - - NN cord-017363-dmb42kna 74 10 infection infection NN cord-017363-dmb42kna 74 11 of of IN cord-017363-dmb42kna 74 12 neonatal neonatal JJ cord-017363-dmb42kna 74 13 piglets piglet NNS cord-017363-dmb42kna 74 14 with with IN cord-017363-dmb42kna 74 15 Clostridium clostridium NN cord-017363-dmb42kna 74 16 perfringens perfringens NN cord-017363-dmb42kna 74 17 type type NN cord-017363-dmb42kna 74 18 A a NN cord-017363-dmb42kna 74 19 and and CC cord-017363-dmb42kna 74 20 Escherichia escherichia NN cord-017363-dmb42kna 74 21 coli coli NNS cord-017363-dmb42kna 74 22 ( ( -LRB- cord-017363-dmb42kna 74 23 K88 K88 NNP cord-017363-dmb42kna 74 24 , , , cord-017363-dmb42kna 74 25 987P 987p CD cord-017363-dmb42kna 74 26 ) ) -RRB- cord-017363-dmb42kna 75 1 Quality quality NN cord-017363-dmb42kna 75 2 assurance assurance NN cord-017363-dmb42kna 75 3 and and CC cord-017363-dmb42kna 75 4 quality quality NN cord-017363-dmb42kna 75 5 control control NN cord-017363-dmb42kna 75 6 in in IN cord-017363-dmb42kna 75 7 the the DT cord-017363-dmb42kna 75 8 routine routine JJ cord-017363-dmb42kna 75 9 molecular molecular JJ cord-017363-dmb42kna 75 10 diagnostic diagnostic JJ cord-017363-dmb42kna 75 11 laboratory laboratory NN cord-017363-dmb42kna 75 12 for for IN cord-017363-dmb42kna 75 13 infectious infectious JJ cord-017363-dmb42kna 75 14 diseases disease NNS