id	sid	tid	token	lemma	pos
cord-272513-umuiovrd	1	1	key	key	NN
cord-272513-umuiovrd	1	2	:	:	:
cord-272513-umuiovrd	1	3	cord-272513-umuiovrd	cord-272513-umuiovrd	NNS
cord-272513-umuiovrd	1	4	authors	author	NNS
cord-272513-umuiovrd	1	5	:	:	:
cord-272513-umuiovrd	1	6	Bindayna	Bindayna	NNP
cord-272513-umuiovrd	1	7	,	,	,
cord-272513-umuiovrd	1	8	Khalid	Khalid	NNP
cord-272513-umuiovrd	1	9	Mubarak	Mubarak	NNP
cord-272513-umuiovrd	1	10	;	;	:
cord-272513-umuiovrd	1	11	Crinion	Crinion	NNP
cord-272513-umuiovrd	1	12	,	,	,
cord-272513-umuiovrd	1	13	Shane	Shane	NNP
cord-272513-umuiovrd	1	14	title	title	NN
cord-272513-umuiovrd	1	15	:	:	:
cord-272513-umuiovrd	1	16	Variant	variant	NN
cord-272513-umuiovrd	1	17	analysis	analysis	NN
cord-272513-umuiovrd	1	18	of	of	IN
cord-272513-umuiovrd	1	19	SARS	SARS	NNP
cord-272513-umuiovrd	1	20	-	-	HYPH
cord-272513-umuiovrd	1	21	CoV-2	CoV-2	NNP
cord-272513-umuiovrd	1	22	genomes	genome	NNS
cord-272513-umuiovrd	1	23	in	in	IN
cord-272513-umuiovrd	1	24	the	the	DT
cord-272513-umuiovrd	1	25	Middle	Middle	NNP
cord-272513-umuiovrd	1	26	East	East	NNP
cord-272513-umuiovrd	1	27	date	date	NN
cord-272513-umuiovrd	1	28	:	:	:
cord-272513-umuiovrd	1	29	2020	2020	CD
cord-272513-umuiovrd	1	30	-	-	SYM
cord-272513-umuiovrd	1	31	10	10	CD
cord-272513-umuiovrd	1	32	-	-	HYPH
cord-272513-umuiovrd	1	33	09	09	CD
cord-272513-umuiovrd	1	34	journal	journal	NN
cord-272513-umuiovrd	1	35	:	:	:
cord-272513-umuiovrd	2	1	bioRxiv	biorxiv	IN
cord-272513-umuiovrd	2	2	DOI	DOI	NNP
cord-272513-umuiovrd	2	3	:	:	:
cord-272513-umuiovrd	3	1	10.1101/2020.10.09.332692	10.1101/2020.10.09.332692	CD
cord-272513-umuiovrd	4	1	sha	sha	NNP
cord-272513-umuiovrd	4	2	:	:	:
cord-272513-umuiovrd	5	1	877ff147ba571027ce33a263ffed3f513f2d0a5c	877ff147ba571027ce33a263ffed3f513f2d0a5c	NNP
cord-272513-umuiovrd	5	2	doc_id	doc_id	NNP
cord-272513-umuiovrd	5	3	:	:	:
cord-272513-umuiovrd	5	4	272513	272513	CD
cord-272513-umuiovrd	5	5	cord_uid	cord_uid	NNS
cord-272513-umuiovrd	5	6	:	:	:
cord-272513-umuiovrd	6	1	umuiovrd	umuiovrd	NNP
cord-272513-umuiovrd	6	2	Background	Background	NNP
cord-272513-umuiovrd	6	3	Coronavirus	Coronavirus	NNP
cord-272513-umuiovrd	6	4	(	(	-LRB-
cord-272513-umuiovrd	6	5	COVID-19	COVID-19	NNP
cord-272513-umuiovrd	6	6	)	)	-RRB-
cord-272513-umuiovrd	6	7	was	be	VBD
cord-272513-umuiovrd	6	8	introduced	introduce	VBN
cord-272513-umuiovrd	6	9	into	into	IN
cord-272513-umuiovrd	6	10	society	society	NN
cord-272513-umuiovrd	6	11	in	in	IN
cord-272513-umuiovrd	6	12	late	late	JJ
cord-272513-umuiovrd	6	13	2019	2019	CD
cord-272513-umuiovrd	6	14	and	and	CC
cord-272513-umuiovrd	6	15	has	have	VBZ
cord-272513-umuiovrd	6	16	now	now	RB
cord-272513-umuiovrd	6	17	reached	reach	VBN
cord-272513-umuiovrd	6	18	over	over	IN
cord-272513-umuiovrd	6	19	26	26	CD
cord-272513-umuiovrd	6	20	million	million	CD
cord-272513-umuiovrd	6	21	cases	case	NNS
cord-272513-umuiovrd	6	22	and	and	CC
cord-272513-umuiovrd	6	23	850,000	850,000	CD
cord-272513-umuiovrd	6	24	deaths	death	NNS
cord-272513-umuiovrd	6	25	.	.	.
cord-272513-umuiovrd	7	1	The	the	DT
cord-272513-umuiovrd	7	2	Middle	Middle	NNP
cord-272513-umuiovrd	7	3	East	East	NNP
cord-272513-umuiovrd	7	4	has	have	VBZ
cord-272513-umuiovrd	7	5	a	a	DT
cord-272513-umuiovrd	7	6	death	death	NN
cord-272513-umuiovrd	7	7	toll	toll	NN
cord-272513-umuiovrd	7	8	of	of	IN
cord-272513-umuiovrd	7	9	∼50,000	∼50,000	NN
cord-272513-umuiovrd	7	10	and	and	CC
cord-272513-umuiovrd	7	11	over	over	IN
cord-272513-umuiovrd	7	12	20,000	20,000	CD
cord-272513-umuiovrd	7	13	of	of	IN
cord-272513-umuiovrd	7	14	these	these	DT
cord-272513-umuiovrd	7	15	are	be	VBP
cord-272513-umuiovrd	7	16	in	in	IN
cord-272513-umuiovrd	7	17	Iran	Iran	NNP
cord-272513-umuiovrd	7	18	,	,	,
cord-272513-umuiovrd	7	19	which	which	WDT
cord-272513-umuiovrd	7	20	has	have	VBZ
cord-272513-umuiovrd	7	21	over	over	IN
cord-272513-umuiovrd	7	22	350,000	350,000	CD
cord-272513-umuiovrd	7	23	confirmed	confirm	VBN
cord-272513-umuiovrd	7	24	cases	case	NNS
cord-272513-umuiovrd	7	25	.	.	.
cord-272513-umuiovrd	8	1	We	-PRON-	PRP
cord-272513-umuiovrd	8	2	expect	expect	VBP
cord-272513-umuiovrd	8	3	that	that	IN
cord-272513-umuiovrd	8	4	Iranian	iranian	JJ
cord-272513-umuiovrd	8	5	cases	case	NNS
cord-272513-umuiovrd	8	6	caused	cause	VBD
cord-272513-umuiovrd	8	7	outbreaks	outbreak	NNS
cord-272513-umuiovrd	8	8	in	in	IN
cord-272513-umuiovrd	8	9	the	the	DT
cord-272513-umuiovrd	8	10	neighbouring	neighbouring	JJ
cord-272513-umuiovrd	8	11	countries	country	NNS
cord-272513-umuiovrd	8	12	and	and	CC
cord-272513-umuiovrd	8	13	that	that	IN
cord-272513-umuiovrd	8	14	variant	variant	JJ
cord-272513-umuiovrd	8	15	mapping	mapping	NN
cord-272513-umuiovrd	8	16	and	and	CC
cord-272513-umuiovrd	8	17	phylogenetic	phylogenetic	NN
cord-272513-umuiovrd	8	18	analysis	analysis	NN
cord-272513-umuiovrd	8	19	can	can	MD
cord-272513-umuiovrd	8	20	be	be	VB
cord-272513-umuiovrd	8	21	used	use	VBN
cord-272513-umuiovrd	8	22	to	to	TO
cord-272513-umuiovrd	8	23	prove	prove	VB
cord-272513-umuiovrd	8	24	this	this	DT
cord-272513-umuiovrd	8	25	.	.	.
cord-272513-umuiovrd	9	1	We	-PRON-	PRP
cord-272513-umuiovrd	9	2	also	also	RB
cord-272513-umuiovrd	9	3	aim	aim	VBP
cord-272513-umuiovrd	9	4	to	to	TO
cord-272513-umuiovrd	9	5	analyse	analyse	VB
cord-272513-umuiovrd	9	6	the	the	DT
cord-272513-umuiovrd	9	7	variants	variant	NNS
cord-272513-umuiovrd	9	8	of	of	IN
cord-272513-umuiovrd	9	9	severe	severe	JJ
cord-272513-umuiovrd	9	10	acute	acute	JJ
cord-272513-umuiovrd	9	11	respiratory	respiratory	JJ
cord-272513-umuiovrd	9	12	syndrome	syndrome	NN
cord-272513-umuiovrd	9	13	coronavirus-2	coronavirus-2	NN
cord-272513-umuiovrd	10	1	(	(	-LRB-
cord-272513-umuiovrd	10	2	SARS	SARS	NNP
cord-272513-umuiovrd	10	3	-	-	HYPH
cord-272513-umuiovrd	10	4	CoV-2	CoV-2	NNP
cord-272513-umuiovrd	10	5	)	)	-RRB-
cord-272513-umuiovrd	11	1	to	to	TO
cord-272513-umuiovrd	11	2	characterise	characterise	VB
cord-272513-umuiovrd	11	3	the	the	DT
cord-272513-umuiovrd	11	4	common	common	JJ
cord-272513-umuiovrd	11	5	genome	genome	NN
cord-272513-umuiovrd	11	6	variants	variant	NNS
cord-272513-umuiovrd	11	7	and	and	CC
cord-272513-umuiovrd	11	8	provide	provide	VB
cord-272513-umuiovrd	11	9	useful	useful	JJ
cord-272513-umuiovrd	11	10	data	datum	NNS
cord-272513-umuiovrd	11	11	in	in	IN
cord-272513-umuiovrd	11	12	the	the	DT
cord-272513-umuiovrd	11	13	global	global	JJ
cord-272513-umuiovrd	11	14	effort	effort	NN
cord-272513-umuiovrd	11	15	to	to	TO
cord-272513-umuiovrd	11	16	prevent	prevent	VB
cord-272513-umuiovrd	11	17	further	further	JJ
cord-272513-umuiovrd	11	18	spread	spread	NN
cord-272513-umuiovrd	11	19	of	of	IN
cord-272513-umuiovrd	11	20	COVID-19	covid-19	NN
cord-272513-umuiovrd	11	21	.	.	.
cord-272513-umuiovrd	12	1	Methods	method	NNS
cord-272513-umuiovrd	13	1	The	the	DT
cord-272513-umuiovrd	13	2	approach	approach	NN
cord-272513-umuiovrd	13	3	uses	use	VBZ
cord-272513-umuiovrd	13	4	bioinformatics	bioinformatics	NN
cord-272513-umuiovrd	13	5	approaches	approach	NNS
cord-272513-umuiovrd	13	6	including	include	VBG
cord-272513-umuiovrd	13	7	multiple	multiple	JJ
cord-272513-umuiovrd	13	8	sequence	sequence	NN
cord-272513-umuiovrd	13	9	alignment	alignment	NN
cord-272513-umuiovrd	13	10	,	,	,
cord-272513-umuiovrd	13	11	variant	variant	NN
cord-272513-umuiovrd	13	12	calling	calling	NN
cord-272513-umuiovrd	13	13	and	and	CC
cord-272513-umuiovrd	13	14	annotation	annotation	NN
cord-272513-umuiovrd	13	15	and	and	CC
cord-272513-umuiovrd	13	16	phylogenetic	phylogenetic	NN
cord-272513-umuiovrd	13	17	analysis	analysis	NN
cord-272513-umuiovrd	13	18	to	to	TO
cord-272513-umuiovrd	13	19	identify	identify	VB
cord-272513-umuiovrd	13	20	the	the	DT
cord-272513-umuiovrd	13	21	genomic	genomic	JJ
cord-272513-umuiovrd	13	22	variants	variant	NNS
cord-272513-umuiovrd	13	23	found	find	VBN
cord-272513-umuiovrd	13	24	in	in	IN
cord-272513-umuiovrd	13	25	the	the	DT
cord-272513-umuiovrd	13	26	region	region	NN
cord-272513-umuiovrd	13	27	.	.	.
cord-272513-umuiovrd	14	1	The	the	DT
cord-272513-umuiovrd	14	2	approach	approach	NN
cord-272513-umuiovrd	14	3	uses	use	VBZ
cord-272513-umuiovrd	14	4	122	122	CD
cord-272513-umuiovrd	14	5	samples	sample	NNS
cord-272513-umuiovrd	14	6	from	from	IN
cord-272513-umuiovrd	14	7	the	the	DT
cord-272513-umuiovrd	14	8	13	13	CD
cord-272513-umuiovrd	14	9	countries	country	NNS
cord-272513-umuiovrd	14	10	of	of	IN
cord-272513-umuiovrd	14	11	the	the	DT
cord-272513-umuiovrd	14	12	Middle	Middle	NNP
cord-272513-umuiovrd	14	13	East	East	NNP
cord-272513-umuiovrd	14	14	sourced	source	VBN
cord-272513-umuiovrd	14	15	from	from	IN
cord-272513-umuiovrd	14	16	the	the	DT
cord-272513-umuiovrd	14	17	Global	Global	NNP
cord-272513-umuiovrd	14	18	Initiative	Initiative	NNP
cord-272513-umuiovrd	14	19	on	on	IN
cord-272513-umuiovrd	14	20	Sharing	Sharing	NNP
cord-272513-umuiovrd	14	21	All	all	DT
cord-272513-umuiovrd	14	22	Influenza	Influenza	NNP
cord-272513-umuiovrd	14	23	Data	Data	NNP
cord-272513-umuiovrd	14	24	(	(	-LRB-
cord-272513-umuiovrd	14	25	GISAID	GISAID	NNP
cord-272513-umuiovrd	14	26	)	)	-RRB-
cord-272513-umuiovrd	14	27	.	.	.
cord-272513-umuiovrd	15	1	Findings	finding	NNS
cord-272513-umuiovrd	16	1	We	-PRON-	PRP
cord-272513-umuiovrd	16	2	identified	identify	VBD
cord-272513-umuiovrd	16	3	2200	2200	CD
cord-272513-umuiovrd	16	4	distinct	distinct	JJ
cord-272513-umuiovrd	16	5	genome	genome	NN
cord-272513-umuiovrd	16	6	variants	variant	NNS
cord-272513-umuiovrd	16	7	including	include	VBG
cord-272513-umuiovrd	16	8	129	129	CD
cord-272513-umuiovrd	16	9	downstream	downstream	JJ
cord-272513-umuiovrd	16	10	gene	gene	NN
cord-272513-umuiovrd	16	11	variants	variant	NNS
cord-272513-umuiovrd	16	12	,	,	,
cord-272513-umuiovrd	16	13	298	298	CD
cord-272513-umuiovrd	16	14	frame	frame	NN
cord-272513-umuiovrd	16	15	shift	shift	NN
cord-272513-umuiovrd	16	16	variants	variant	NNS
cord-272513-umuiovrd	16	17	,	,	,
cord-272513-umuiovrd	16	18	789	789	CD
cord-272513-umuiovrd	16	19	missense	missense	NN
cord-272513-umuiovrd	16	20	variants	variant	NNS
cord-272513-umuiovrd	16	21	,	,	,
cord-272513-umuiovrd	16	22	1	1	CD
cord-272513-umuiovrd	16	23	start	start	NN
cord-272513-umuiovrd	16	24	lost	lose	VBN
cord-272513-umuiovrd	16	25	,	,	,
cord-272513-umuiovrd	16	26	13	13	CD
cord-272513-umuiovrd	16	27	start	start	NN
cord-272513-umuiovrd	16	28	gained	gain	VBN
cord-272513-umuiovrd	16	29	,	,	,
cord-272513-umuiovrd	16	30	1	1	CD
cord-272513-umuiovrd	16	31	stop	stop	NN
cord-272513-umuiovrd	16	32	lost	lose	VBN
cord-272513-umuiovrd	16	33	,	,	,
cord-272513-umuiovrd	16	34	249	249	CD
cord-272513-umuiovrd	16	35	synonymous	synonymous	JJ
cord-272513-umuiovrd	16	36	variants	variant	NNS
cord-272513-umuiovrd	16	37	and	and	CC
cord-272513-umuiovrd	16	38	720	720	CD
cord-272513-umuiovrd	16	39	upstream	upstream	JJ
cord-272513-umuiovrd	16	40	gene	gene	NN
cord-272513-umuiovrd	16	41	variants	variant	NNS
cord-272513-umuiovrd	16	42	.	.	.
cord-272513-umuiovrd	17	1	The	the	DT
cord-272513-umuiovrd	17	2	most	most	RBS
cord-272513-umuiovrd	17	3	common	common	JJ
cord-272513-umuiovrd	17	4	,	,	,
cord-272513-umuiovrd	17	5	high	high	JJ
cord-272513-umuiovrd	17	6	impact	impact	NN
cord-272513-umuiovrd	17	7	variants	variant	NNS
cord-272513-umuiovrd	17	8	were	be	VBD
cord-272513-umuiovrd	17	9	10818delTinsG	10818deltinsg	CD
cord-272513-umuiovrd	17	10	,	,	,
cord-272513-umuiovrd	17	11	2772delCinsC	2772delcinsc	CD
cord-272513-umuiovrd	17	12	,	,	,
cord-272513-umuiovrd	17	13	14159delCinsC	14159delcinsc	CD
cord-272513-umuiovrd	17	14	and	and	CC
cord-272513-umuiovrd	17	15	2789delAinsA.	2789delainsa.	CD
cord-272513-umuiovrd	17	16	Variant	variant	JJ
cord-272513-umuiovrd	17	17	alignment	alignment	NN
cord-272513-umuiovrd	17	18	and	and	CC
cord-272513-umuiovrd	17	19	phylogenetic	phylogenetic	JJ
cord-272513-umuiovrd	17	20	tree	tree	NN
cord-272513-umuiovrd	17	21	generation	generation	NN
cord-272513-umuiovrd	17	22	indicates	indicate	VBZ
cord-272513-umuiovrd	17	23	that	that	IN
cord-272513-umuiovrd	17	24	samples	sample	NNS
cord-272513-umuiovrd	17	25	from	from	IN
cord-272513-umuiovrd	17	26	Iran	Iran	NNP
cord-272513-umuiovrd	17	27	likely	likely	RB
cord-272513-umuiovrd	17	28	introduced	introduce	VBD
cord-272513-umuiovrd	17	29	COVID-19	covid-19	CD
cord-272513-umuiovrd	17	30	to	to	IN
cord-272513-umuiovrd	17	31	the	the	DT
cord-272513-umuiovrd	17	32	rest	rest	NN
cord-272513-umuiovrd	17	33	of	of	IN
cord-272513-umuiovrd	17	34	the	the	DT
cord-272513-umuiovrd	17	35	Middle	Middle	NNP
cord-272513-umuiovrd	17	36	East	East	NNP
cord-272513-umuiovrd	17	37	.	.	.
cord-272513-umuiovrd	18	1	Interpretation	interpretation	NN
cord-272513-umuiovrd	19	1	The	the	DT
cord-272513-umuiovrd	19	2	phylogenetic	phylogenetic	JJ
cord-272513-umuiovrd	19	3	and	and	CC
cord-272513-umuiovrd	19	4	variant	variant	NN
cord-272513-umuiovrd	19	5	analysis	analysis	NN
cord-272513-umuiovrd	19	6	provides	provide	VBZ
cord-272513-umuiovrd	19	7	unique	unique	JJ
cord-272513-umuiovrd	19	8	insight	insight	NN
cord-272513-umuiovrd	19	9	into	into	IN
cord-272513-umuiovrd	19	10	mutation	mutation	NN
cord-272513-umuiovrd	19	11	types	type	NNS
cord-272513-umuiovrd	19	12	in	in	IN
cord-272513-umuiovrd	19	13	genomes	genome	NNS
cord-272513-umuiovrd	19	14	.	.	.
cord-272513-umuiovrd	20	1	Initial	initial	JJ
cord-272513-umuiovrd	20	2	introduction	introduction	NN
cord-272513-umuiovrd	20	3	of	of	IN
cord-272513-umuiovrd	20	4	COVID-19	COVID-19	NNP
cord-272513-umuiovrd	20	5	was	be	VBD
cord-272513-umuiovrd	20	6	most	most	RBS
cord-272513-umuiovrd	20	7	likely	likely	JJ
cord-272513-umuiovrd	20	8	due	due	IN
cord-272513-umuiovrd	20	9	to	to	IN
cord-272513-umuiovrd	20	10	Iranian	iranian	JJ
cord-272513-umuiovrd	20	11	transmission	transmission	NN
cord-272513-umuiovrd	20	12	.	.	.
cord-272513-umuiovrd	21	1	Some	some	DT
cord-272513-umuiovrd	21	2	countries	country	NNS
cord-272513-umuiovrd	21	3	show	show	VBP
cord-272513-umuiovrd	21	4	evidence	evidence	NN
cord-272513-umuiovrd	21	5	of	of	IN
cord-272513-umuiovrd	21	6	novel	novel	NN
cord-272513-umuiovrd	21	7	mutations	mutation	NNS
cord-272513-umuiovrd	21	8	and	and	CC
cord-272513-umuiovrd	21	9	unique	unique	JJ
cord-272513-umuiovrd	21	10	strains	strain	NNS
cord-272513-umuiovrd	21	11	.	.	.
cord-272513-umuiovrd	22	1	Increased	increase	VBN
cord-272513-umuiovrd	22	2	time	time	NN
cord-272513-umuiovrd	22	3	in	in	IN
cord-272513-umuiovrd	22	4	small	small	JJ
cord-272513-umuiovrd	22	5	populations	population	NNS
cord-272513-umuiovrd	22	6	is	be	VBZ
cord-272513-umuiovrd	22	7	likely	likely	JJ
cord-272513-umuiovrd	22	8	to	to	TO
cord-272513-umuiovrd	22	9	contribute	contribute	VB
cord-272513-umuiovrd	22	10	to	to	IN
cord-272513-umuiovrd	22	11	more	more	JJR
cord-272513-umuiovrd	22	12	unique	unique	JJ
cord-272513-umuiovrd	22	13	genomes	genome	NNS
cord-272513-umuiovrd	22	14	.	.	.
cord-272513-umuiovrd	23	1	This	this	DT
cord-272513-umuiovrd	23	2	study	study	NN
cord-272513-umuiovrd	23	3	provides	provide	VBZ
cord-272513-umuiovrd	23	4	more	more	JJR
cord-272513-umuiovrd	23	5	in	in	IN
cord-272513-umuiovrd	23	6	depth	depth	NN
cord-272513-umuiovrd	23	7	analysis	analysis	NN
cord-272513-umuiovrd	23	8	of	of	IN
cord-272513-umuiovrd	23	9	the	the	DT
cord-272513-umuiovrd	23	10	variants	variant	NNS
cord-272513-umuiovrd	23	11	affecting	affect	VBG
cord-272513-umuiovrd	23	12	in	in	IN
cord-272513-umuiovrd	23	13	the	the	DT
cord-272513-umuiovrd	23	14	region	region	NN
cord-272513-umuiovrd	23	15	than	than	IN
cord-272513-umuiovrd	23	16	any	any	DT
cord-272513-umuiovrd	23	17	other	other	JJ
cord-272513-umuiovrd	23	18	study	study	NN
cord-272513-umuiovrd	23	19	.	.	.
cord-272513-umuiovrd	24	1	Funding	fund	VBG
cord-272513-umuiovrd	24	2	None	none	NN
cord-272513-umuiovrd	25	1	On	on	IN
cord-272513-umuiovrd	25	2	January	January	NNP
cord-272513-umuiovrd	25	3	9	9	CD
cord-272513-umuiovrd	25	4	h	h	NN
cord-272513-umuiovrd	25	5	2020	2020	CD
cord-272513-umuiovrd	25	6	,	,	,
cord-272513-umuiovrd	25	7	the	the	DT
cord-272513-umuiovrd	25	8	China	China	NNP
cord-272513-umuiovrd	25	9	Centre	Centre	NNP
cord-272513-umuiovrd	25	10	for	for	IN
cord-272513-umuiovrd	25	11	Disease	Disease	NNP
cord-272513-umuiovrd	25	12	Control	Control	NNP
cord-272513-umuiovrd	25	13	reported	report	VBD
cord-272513-umuiovrd	25	14	that	that	IN
cord-272513-umuiovrd	25	15	15	15	CD
cord-272513-umuiovrd	25	16	of	of	IN
cord-272513-umuiovrd	25	17	59	59	CD
cord-272513-umuiovrd	25	18	suspected	suspect	VBN
cord-272513-umuiovrd	25	19	cases	case	NNS
cord-272513-umuiovrd	25	20	of	of	IN
cord-272513-umuiovrd	25	21	pneumonia	pneumonia	NN
cord-272513-umuiovrd	25	22	were	be	VBD
cord-272513-umuiovrd	25	23	due	due	JJ
cord-272513-umuiovrd	25	24	to	to	IN
cord-272513-umuiovrd	25	25	a	a	DT
cord-272513-umuiovrd	25	26	novel	novel	JJ
cord-272513-umuiovrd	25	27	human	human	JJ
cord-272513-umuiovrd	25	28	coronavirus	coronavirus	NN
cord-272513-umuiovrd	25	29	(	(	-LRB-
cord-272513-umuiovrd	25	30	CoV	CoV	NNP
cord-272513-umuiovrd	25	31	)	)	-RRB-
cord-272513-umuiovrd	25	32	,	,	,
cord-272513-umuiovrd	25	33	now	now	RB
cord-272513-umuiovrd	25	34	known	know	VBN
cord-272513-umuiovrd	25	35	as	as	IN
cord-272513-umuiovrd	25	36	Severe	severe	JJ
cord-272513-umuiovrd	25	37	Acute	acute	JJ
cord-272513-umuiovrd	25	38	Respiratory	Respiratory	NNP
cord-272513-umuiovrd	25	39	Syndrome	Syndrome	NNP
cord-272513-umuiovrd	25	40	CoV	cov	NN
cord-272513-umuiovrd	25	41	2	2	CD
cord-272513-umuiovrd	26	1	(	(	-LRB-
cord-272513-umuiovrd	26	2	SARS	SARS	NNP
cord-272513-umuiovrd	26	3	-	-	HYPH
cord-272513-umuiovrd	26	4	CoV-2	CoV-2	NNP
cord-272513-umuiovrd	26	5	)	)	-RRB-
cord-272513-umuiovrd	26	6	1	1	CD
cord-272513-umuiovrd	26	7	.	.	.
cord-272513-umuiovrd	27	1	The	the	DT
cord-272513-umuiovrd	27	2	genome	genome	NN
cord-272513-umuiovrd	27	3	for	for	IN
cord-272513-umuiovrd	27	4	this	this	DT
cord-272513-umuiovrd	27	5	novel	novel	JJ
cord-272513-umuiovrd	27	6	virus	virus	NN
cord-272513-umuiovrd	27	7	was	be	VBD
cord-272513-umuiovrd	27	8	then	then	RB
cord-272513-umuiovrd	27	9	made	make	VBN
cord-272513-umuiovrd	27	10	publicly	publicly	RB
cord-272513-umuiovrd	27	11	available	available	JJ
cord-272513-umuiovrd	27	12	on	on	IN
cord-272513-umuiovrd	27	13	the	the	DT
cord-272513-umuiovrd	27	14	Global	Global	NNP
cord-272513-umuiovrd	27	15	Initiative	Initiative	NNP
cord-272513-umuiovrd	27	16	on	on	IN
cord-272513-umuiovrd	27	17	Sharing	Sharing	NNP
cord-272513-umuiovrd	27	18	All	all	DT
cord-272513-umuiovrd	27	19	Influenza	Influenza	NNP
cord-272513-umuiovrd	27	20	Data	Data	NNP
cord-272513-umuiovrd	27	21	(	(	-LRB-
cord-272513-umuiovrd	27	22	GISAID	GISAID	NNP
cord-272513-umuiovrd	27	23	)	)	-RRB-
cord-272513-umuiovrd	28	1	the	the	DT
cord-272513-umuiovrd	28	2	next	next	JJ
cord-272513-umuiovrd	28	3	day	day	NN
cord-272513-umuiovrd	28	4	.	.	.
cord-272513-umuiovrd	29	1	SARS	SARS	NNP
cord-272513-umuiovrd	29	2	-	-	HYPH
cord-272513-umuiovrd	29	3	CoV-2	CoV-2	NNP
cord-272513-umuiovrd	29	4	is	be	VBZ
cord-272513-umuiovrd	29	5	an	an	DT
cord-272513-umuiovrd	29	6	easily	easily	RB
cord-272513-umuiovrd	29	7	spreadable	spreadable	JJ
cord-272513-umuiovrd	29	8	virus	virus	NN
cord-272513-umuiovrd	29	9	which	which	WDT
cord-272513-umuiovrd	29	10	would	would	MD
cord-272513-umuiovrd	29	11	evolve	evolve	VB
cord-272513-umuiovrd	29	12	into	into	IN
cord-272513-umuiovrd	29	13	a	a	DT
cord-272513-umuiovrd	29	14	global	global	JJ
cord-272513-umuiovrd	29	15	pandemic	pandemic	NN
cord-272513-umuiovrd	29	16	of	of	IN
cord-272513-umuiovrd	29	17	at	at	RB
cord-272513-umuiovrd	29	18	least	least	RBS
cord-272513-umuiovrd	29	19	26	26	CD
cord-272513-umuiovrd	29	20	million	million	CD
cord-272513-umuiovrd	29	21	cases	case	NNS
cord-272513-umuiovrd	29	22	and	and	CC
cord-272513-umuiovrd	29	23	850,000	850,000	CD
cord-272513-umuiovrd	29	24	deaths	death	NNS
cord-272513-umuiovrd	29	25	2	2	CD
cord-272513-umuiovrd	29	26	.	.	.
cord-272513-umuiovrd	30	1	One	one	CD
cord-272513-umuiovrd	30	2	of	of	IN
cord-272513-umuiovrd	30	3	the	the	DT
cord-272513-umuiovrd	30	4	first	first	JJ
cord-272513-umuiovrd	30	5	countries	country	NNS
cord-272513-umuiovrd	30	6	to	to	TO
cord-272513-umuiovrd	30	7	experience	experience	VB
cord-272513-umuiovrd	30	8	a	a	DT
cord-272513-umuiovrd	30	9	significant	significant	JJ
cord-272513-umuiovrd	30	10	outbreak	outbreak	NN
cord-272513-umuiovrd	30	11	was	be	VBD
cord-272513-umuiovrd	30	12	Iran	Iran	NNP
cord-272513-umuiovrd	30	13	.	.	.
cord-272513-umuiovrd	31	1	The	the	DT
cord-272513-umuiovrd	31	2	country	country	NN
cord-272513-umuiovrd	31	3	reported	report	VBD
cord-272513-umuiovrd	31	4	its	-PRON-	PRP$
cord-272513-umuiovrd	31	5	first	first	JJ
cord-272513-umuiovrd	31	6	confirmed	confirm	VBN
cord-272513-umuiovrd	31	7	case	case	NN
cord-272513-umuiovrd	31	8	on	on	IN
cord-272513-umuiovrd	31	9	19	19	CD
cord-272513-umuiovrd	31	10	th	th	CD
cord-272513-umuiovrd	31	11	February	February	NNP
cord-272513-umuiovrd	31	12	2020	2020	CD
cord-272513-umuiovrd	31	13	from	from	IN
cord-272513-umuiovrd	31	14	a	a	DT
cord-272513-umuiovrd	31	15	merchant	merchant	NN
cord-272513-umuiovrd	31	16	in	in	IN
cord-272513-umuiovrd	31	17	Qom	Qom	NNP
cord-272513-umuiovrd	31	18	who	who	WP
cord-272513-umuiovrd	31	19	travelled	travel	VBD
cord-272513-umuiovrd	31	20	from	from	IN
cord-272513-umuiovrd	31	21	China	China	NNP
cord-272513-umuiovrd	31	22	3	3	CD
cord-272513-umuiovrd	31	23	.	.	.
cord-272513-umuiovrd	31	24	.	.	.
cord-272513-umuiovrd	32	1	Many	many	JJ
cord-272513-umuiovrd	32	2	of	of	IN
cord-272513-umuiovrd	32	3	the	the	DT
cord-272513-umuiovrd	32	4	first	first	JJ
cord-272513-umuiovrd	32	5	countries	country	NNS
cord-272513-umuiovrd	32	6	with	with	IN
cord-272513-umuiovrd	32	7	infections	infection	NNS
cord-272513-umuiovrd	32	8	in	in	IN
cord-272513-umuiovrd	32	9	the	the	DT
cord-272513-umuiovrd	32	10	Middle	Middle	NNP
cord-272513-umuiovrd	32	11	East	East	NNP
cord-272513-umuiovrd	32	12	were	be	VBD
cord-272513-umuiovrd	32	13	linked	link	VBN
cord-272513-umuiovrd	32	14	to	to	IN
cord-272513-umuiovrd	32	15	travellers	traveller	NNS
cord-272513-umuiovrd	32	16	from	from	IN
cord-272513-umuiovrd	32	17	Iran	Iran	NNP
cord-272513-umuiovrd	32	18	including	include	VBG
cord-272513-umuiovrd	32	19	Lebanon	Lebanon	NNP
cord-272513-umuiovrd	32	20	,	,	,
cord-272513-umuiovrd	32	21	Kuwait	Kuwait	NNP
cord-272513-umuiovrd	32	22	,	,	,
cord-272513-umuiovrd	32	23	Bahrain	Bahrain	NNP
cord-272513-umuiovrd	32	24	,	,	,
cord-272513-umuiovrd	32	25	Iraq	Iraq	NNP
cord-272513-umuiovrd	32	26	,	,	,
cord-272513-umuiovrd	32	27	Oman	Oman	NNP
cord-272513-umuiovrd	32	28	and	and	CC
cord-272513-umuiovrd	32	29	UAE	UAE	NNP
cord-272513-umuiovrd	32	30	.	.	.
cord-272513-umuiovrd	33	1	COVID-19	COVID-19	NNP
cord-272513-umuiovrd	33	2	continued	continue	VBD
cord-272513-umuiovrd	33	3	to	to	TO
cord-272513-umuiovrd	33	4	spread	spread	VB
cord-272513-umuiovrd	33	5	to	to	IN
cord-272513-umuiovrd	33	6	the	the	DT
cord-272513-umuiovrd	33	7	remaining	remain	VBG
cord-272513-umuiovrd	33	8	Middle	middle	JJ
cord-272513-umuiovrd	33	9	Eastern	eastern	JJ
cord-272513-umuiovrd	33	10	countries	country	NNS
cord-272513-umuiovrd	33	11	with	with	IN
cord-272513-umuiovrd	33	12	a	a	DT
cord-272513-umuiovrd	33	13	death	death	NN
cord-272513-umuiovrd	33	14	toll	toll	NN
cord-272513-umuiovrd	33	15	of	of	IN
cord-272513-umuiovrd	33	16	over	over	IN
cord-272513-umuiovrd	33	17	50,000	50,000	CD
cord-272513-umuiovrd	33	18	people	people	NNS
cord-272513-umuiovrd	33	19	according	accord	VBG
cord-272513-umuiovrd	33	20	to	to	IN
cord-272513-umuiovrd	33	21	health	health	NN
cord-272513-umuiovrd	33	22	authorities	authority	NNS
cord-272513-umuiovrd	33	23	.	.	.
cord-272513-umuiovrd	34	1	This	this	DT
cord-272513-umuiovrd	34	2	number	number	NN
cord-272513-umuiovrd	34	3	is	be	VBZ
cord-272513-umuiovrd	34	4	expected	expect	VBN
cord-272513-umuiovrd	34	5	to	to	TO
cord-272513-umuiovrd	34	6	be	be	VB
cord-272513-umuiovrd	34	7	an	an	DT
cord-272513-umuiovrd	34	8	underestimation	underestimation	NN
cord-272513-umuiovrd	34	9	due	due	IN
cord-272513-umuiovrd	34	10	to	to	IN
cord-272513-umuiovrd	34	11	countries	country	NNS
cord-272513-umuiovrd	34	12	effected	effect	VBN
cord-272513-umuiovrd	34	13	by	by	IN
cord-272513-umuiovrd	34	14	war	war	NN
cord-272513-umuiovrd	34	15	including	include	VBG
cord-272513-umuiovrd	34	16	Libya	Libya	NNP
cord-272513-umuiovrd	34	17	,	,	,
cord-272513-umuiovrd	34	18	Syria	Syria	NNP
cord-272513-umuiovrd	34	19	and	and	CC
cord-272513-umuiovrd	34	20	Yemen	Yemen	NNP
cord-272513-umuiovrd	34	21	.	.	.
cord-272513-umuiovrd	35	1	Needless	needless	JJ
cord-272513-umuiovrd	35	2	to	to	TO
cord-272513-umuiovrd	35	3	say	say	VB
cord-272513-umuiovrd	35	4	,	,	,
cord-272513-umuiovrd	35	5	there	there	EX
cord-272513-umuiovrd	35	6	have	have	VBP
cord-272513-umuiovrd	35	7	been	be	VBN
cord-272513-umuiovrd	35	8	devastating	devastating	JJ
cord-272513-umuiovrd	35	9	effects	effect	NNS
cord-272513-umuiovrd	35	10	to	to	IN
cord-272513-umuiovrd	35	11	the	the	DT
cord-272513-umuiovrd	35	12	region	region	NN
cord-272513-umuiovrd	35	13	and	and	CC
cord-272513-umuiovrd	35	14	the	the	DT
cord-272513-umuiovrd	35	15	real	real	JJ
cord-272513-umuiovrd	35	16	effects	effect	NNS
cord-272513-umuiovrd	35	17	are	be	VBP
cord-272513-umuiovrd	35	18	expected	expect	VBN
cord-272513-umuiovrd	35	19	to	to	TO
cord-272513-umuiovrd	35	20	be	be	VB
cord-272513-umuiovrd	35	21	unreported	unreported	JJ
cord-272513-umuiovrd	35	22	4	4	CD
cord-272513-umuiovrd	35	23	.	.	.
cord-272513-umuiovrd	36	1	Researchers	researcher	NNS
cord-272513-umuiovrd	36	2	are	be	VBP
cord-272513-umuiovrd	36	3	racing	race	VBG
cord-272513-umuiovrd	36	4	to	to	TO
cord-272513-umuiovrd	36	5	develop	develop	VB
cord-272513-umuiovrd	36	6	a	a	DT
cord-272513-umuiovrd	36	7	vaccine	vaccine	NN
cord-272513-umuiovrd	36	8	that	that	WDT
cord-272513-umuiovrd	36	9	can	can	MD
cord-272513-umuiovrd	36	10	provide	provide	VB
cord-272513-umuiovrd	36	11	viral	viral	JJ
cord-272513-umuiovrd	36	12	immunity	immunity	NN
cord-272513-umuiovrd	36	13	and	and	CC
cord-272513-umuiovrd	36	14	avoid	avoid	VB
cord-272513-umuiovrd	36	15	additional	additional	JJ
cord-272513-umuiovrd	36	16	deaths	death	NNS
cord-272513-umuiovrd	36	17	.	.	.
cord-272513-umuiovrd	37	1	SAR	SAR	NNP
cord-272513-umuiovrd	37	2	-	-	HYPH
cord-272513-umuiovrd	37	3	CoV-2	CoV-2	NNP
cord-272513-umuiovrd	37	4	is	be	VBZ
cord-272513-umuiovrd	37	5	transmitted	transmit	VBN
cord-272513-umuiovrd	37	6	using	use	VBG
cord-272513-umuiovrd	37	7	the	the	DT
cord-272513-umuiovrd	37	8	spike	spike	NN
cord-272513-umuiovrd	37	9	protein	protein	NN
cord-272513-umuiovrd	37	10	which	which	WDT
cord-272513-umuiovrd	37	11	binds	bind	VBZ
cord-272513-umuiovrd	37	12	to	to	IN
cord-272513-umuiovrd	37	13	human	human	JJ
cord-272513-umuiovrd	37	14	angiotensin	angiotensin	NN
cord-272513-umuiovrd	37	15	-	-	HYPH
cord-272513-umuiovrd	37	16	converting	convert	VBG
cord-272513-umuiovrd	37	17	enzyme	enzyme	NN
cord-272513-umuiovrd	37	18	2	2	CD
cord-272513-umuiovrd	37	19	(	(	-LRB-
cord-272513-umuiovrd	37	20	ACE2	ACE2	NNP
cord-272513-umuiovrd	37	21	)	)	-RRB-
cord-272513-umuiovrd	37	22	receptor	receptor	NN
cord-272513-umuiovrd	37	23	;	;	:
cord-272513-umuiovrd	37	24	the	the	DT
cord-272513-umuiovrd	37	25	virus	virus	NN
cord-272513-umuiovrd	37	26	is	be	VBZ
cord-272513-umuiovrd	37	27	easily	easily	RB
cord-272513-umuiovrd	37	28	transmittable	transmittable	JJ
cord-272513-umuiovrd	37	29	due	due	IN
cord-272513-umuiovrd	37	30	to	to	IN
cord-272513-umuiovrd	37	31	mutations	mutation	NNS
cord-272513-umuiovrd	37	32	in	in	IN
cord-272513-umuiovrd	37	33	the	the	DT
cord-272513-umuiovrd	37	34	receptor	receptor	NN
cord-272513-umuiovrd	37	35	-	-	HYPH
cord-272513-umuiovrd	37	36	binding	bind	VBG
cord-272513-umuiovrd	37	37	(	(	-LRB-
cord-272513-umuiovrd	37	38	S1	S1	NNP
cord-272513-umuiovrd	37	39	)	)	-RRB-
cord-272513-umuiovrd	37	40	and	and	CC
cord-272513-umuiovrd	37	41	fusion	fusion	NN
cord-272513-umuiovrd	37	42	(	(	-LRB-
cord-272513-umuiovrd	37	43	S2	s2	NN
cord-272513-umuiovrd	37	44	)	)	-RRB-
cord-272513-umuiovrd	37	45	domain	domain	NN
cord-272513-umuiovrd	37	46	of	of	IN
cord-272513-umuiovrd	37	47	the	the	DT
cord-272513-umuiovrd	37	48	strain	strain	NN
cord-272513-umuiovrd	37	49	5	5	CD
cord-272513-umuiovrd	37	50	.	.	.
cord-272513-umuiovrd	38	1	Transmission	transmission	NN
cord-272513-umuiovrd	38	2	could	could	MD
cord-272513-umuiovrd	38	3	be	be	VB
cord-272513-umuiovrd	38	4	made	make	VBN
cord-272513-umuiovrd	38	5	even	even	RB
cord-272513-umuiovrd	38	6	easier	easy	JJR
cord-272513-umuiovrd	38	7	if	if	IN
cord-272513-umuiovrd	38	8	more	more	JJR
cord-272513-umuiovrd	38	9	mutations	mutation	NNS
cord-272513-umuiovrd	38	10	accumulate	accumulate	VBP
cord-272513-umuiovrd	38	11	.	.	.
cord-272513-umuiovrd	39	1	Although	although	IN
cord-272513-umuiovrd	39	2	mutations	mutation	NNS
cord-272513-umuiovrd	39	3	are	be	VBP
cord-272513-umuiovrd	39	4	rare	rare	JJ
cord-272513-umuiovrd	39	5	,	,	,
cord-272513-umuiovrd	39	6	they	-PRON-	PRP
cord-272513-umuiovrd	39	7	can	can	MD
cord-272513-umuiovrd	39	8	create	create	VB
cord-272513-umuiovrd	39	9	new	new	JJ
cord-272513-umuiovrd	39	10	strains	strain	NNS
cord-272513-umuiovrd	39	11	and	and	CC
cord-272513-umuiovrd	39	12	it	-PRON-	PRP
cord-272513-umuiovrd	39	13	is	be	VBZ
cord-272513-umuiovrd	39	14	not	not	RB
cord-272513-umuiovrd	39	15	guaranteed	guarantee	VBN
cord-272513-umuiovrd	39	16	that	that	IN
cord-272513-umuiovrd	39	17	the	the	DT
cord-272513-umuiovrd	39	18	current	current	JJ
cord-272513-umuiovrd	39	19	leading	lead	VBG
cord-272513-umuiovrd	39	20	vaccine	vaccine	NN
cord-272513-umuiovrd	39	21	trials	trial	NNS
cord-272513-umuiovrd	39	22	will	will	MD
cord-272513-umuiovrd	39	23	be	be	VB
cord-272513-umuiovrd	39	24	effective	effective	JJ
cord-272513-umuiovrd	39	25	as	as	IN
cord-272513-umuiovrd	39	26	SARS	SARS	NNP
cord-272513-umuiovrd	39	27	-	-	HYPH
cord-272513-umuiovrd	39	28	CoV-2	CoV-2	NNP
cord-272513-umuiovrd	39	29	continues	continue	VBZ
cord-272513-umuiovrd	39	30	to	to	TO
cord-272513-umuiovrd	39	31	mutate	mutate	VB
cord-272513-umuiovrd	39	32	6	6	CD
cord-272513-umuiovrd	39	33	.	.	.
cord-272513-umuiovrd	40	1	By	by	IN
cord-272513-umuiovrd	40	2	categorizing	categorize	VBG
cord-272513-umuiovrd	40	3	variants	variant	NNS
cord-272513-umuiovrd	40	4	,	,	,
cord-272513-umuiovrd	40	5	we	-PRON-	PRP
cord-272513-umuiovrd	40	6	can	can	MD
cord-272513-umuiovrd	40	7	identify	identify	VB
cord-272513-umuiovrd	40	8	any	any	DT
cord-272513-umuiovrd	40	9	new	new	JJ
cord-272513-umuiovrd	40	10	strains	strain	NNS
cord-272513-umuiovrd	40	11	and	and	CC
cord-272513-umuiovrd	40	12	how	how	WRB
cord-272513-umuiovrd	40	13	the	the	DT
cord-272513-umuiovrd	40	14	mutations	mutation	NNS
cord-272513-umuiovrd	40	15	are	be	VBP
cord-272513-umuiovrd	40	16	likely	likely	JJ
cord-272513-umuiovrd	40	17	to	to	TO
cord-272513-umuiovrd	40	18	affect	affect	VB
cord-272513-umuiovrd	40	19	spread	spread	VBN
cord-272513-umuiovrd	40	20	.	.	.
cord-272513-umuiovrd	41	1	As	as	IN
cord-272513-umuiovrd	41	2	the	the	DT
cord-272513-umuiovrd	41	3	Middle	Middle	NNP
cord-272513-umuiovrd	41	4	East	East	NNP
cord-272513-umuiovrd	41	5	is	be	VBZ
cord-272513-umuiovrd	41	6	often	often	RB
cord-272513-umuiovrd	41	7	under	under	IN
cord-272513-umuiovrd	41	8	reported	report	VBN
cord-272513-umuiovrd	41	9	,	,	,
cord-272513-umuiovrd	41	10	it	-PRON-	PRP
cord-272513-umuiovrd	41	11	is	be	VBZ
cord-272513-umuiovrd	41	12	important	important	JJ
cord-272513-umuiovrd	41	13	to	to	TO
cord-272513-umuiovrd	41	14	characterise	characterise	VB
cord-272513-umuiovrd	41	15	the	the	DT
cord-272513-umuiovrd	41	16	variants	variant	NNS
cord-272513-umuiovrd	41	17	of	of	IN
cord-272513-umuiovrd	41	18	strains	strain	NNS
cord-272513-umuiovrd	41	19	that	that	WDT
cord-272513-umuiovrd	41	20	are	be	VBP
cord-272513-umuiovrd	41	21	commonly	commonly	RB
cord-272513-umuiovrd	41	22	present	present	JJ
cord-272513-umuiovrd	41	23	.	.	.
cord-272513-umuiovrd	42	1	Analysis	analysis	NN
cord-272513-umuiovrd	42	2	of	of	IN
cord-272513-umuiovrd	42	3	the	the	DT
cord-272513-umuiovrd	42	4	common	common	JJ
cord-272513-umuiovrd	42	5	variants	variant	NNS
cord-272513-umuiovrd	42	6	in	in	IN
cord-272513-umuiovrd	42	7	the	the	DT
cord-272513-umuiovrd	42	8	Middle	Middle	NNP
cord-272513-umuiovrd	42	9	East	East	NNP
cord-272513-umuiovrd	42	10	is	be	VBZ
cord-272513-umuiovrd	42	11	essential	essential	JJ
cord-272513-umuiovrd	42	12	to	to	TO
cord-272513-umuiovrd	42	13	develop	develop	VB
cord-272513-umuiovrd	42	14	a	a	DT
cord-272513-umuiovrd	42	15	vaccine	vaccine	NN
cord-272513-umuiovrd	42	16	that	that	WDT
cord-272513-umuiovrd	42	17	treats	treat	VBZ
cord-272513-umuiovrd	42	18	the	the	DT
cord-272513-umuiovrd	42	19	strains	strain	NNS
cord-272513-umuiovrd	42	20	in	in	IN
cord-272513-umuiovrd	42	21	the	the	DT
cord-272513-umuiovrd	42	22	region	region	NN
cord-272513-umuiovrd	42	23	.	.	.
cord-272513-umuiovrd	43	1	This	this	DT
cord-272513-umuiovrd	43	2	analysis	analysis	NN
cord-272513-umuiovrd	43	3	helps	help	VBZ
cord-272513-umuiovrd	43	4	understand	understand	VB
cord-272513-umuiovrd	43	5	the	the	DT
cord-272513-umuiovrd	43	6	viral	viral	JJ
cord-272513-umuiovrd	43	7	genome	genome	NN
cord-272513-umuiovrd	43	8	landscape	landscape	NN
cord-272513-umuiovrd	43	9	and	and	CC
cord-272513-umuiovrd	43	10	identify	identify	VB
cord-272513-umuiovrd	43	11	clades	clade	NNS
cord-272513-umuiovrd	43	12	of	of	IN
cord-272513-umuiovrd	43	13	the	the	DT
cord-272513-umuiovrd	43	14	region	region	NN
cord-272513-umuiovrd	43	15	.	.	.
cord-272513-umuiovrd	44	1	•	•	NNP
cord-272513-umuiovrd	44	2	Our	-PRON-	PRP$
cord-272513-umuiovrd	44	3	hypothesis	hypothesis	NN
cord-272513-umuiovrd	44	4	is	be	VBZ
cord-272513-umuiovrd	44	5	that	that	IN
cord-272513-umuiovrd	44	6	variants	variant	NNS
cord-272513-umuiovrd	44	7	found	find	VBN
cord-272513-umuiovrd	44	8	in	in	IN
cord-272513-umuiovrd	44	9	SARS	SARS	NNP
cord-272513-umuiovrd	44	10	-	-	HYPH
cord-272513-umuiovrd	44	11	CoV-2	CoV-2	NNP
cord-272513-umuiovrd	44	12	genomes	genome	NNS
cord-272513-umuiovrd	44	13	from	from	IN
cord-272513-umuiovrd	44	14	Middle	middle	JJ
cord-272513-umuiovrd	44	15	Eastern	eastern	JJ
cord-272513-umuiovrd	44	16	samples	sample	NNS
cord-272513-umuiovrd	44	17	will	will	MD
cord-272513-umuiovrd	44	18	indicate	indicate	VB
cord-272513-umuiovrd	44	19	delivery	delivery	NN
cord-272513-umuiovrd	44	20	from	from	IN
cord-272513-umuiovrd	44	21	Iran	Iran	NNP
cord-272513-umuiovrd	44	22	.	.	.
cord-272513-umuiovrd	45	1	We	-PRON-	PRP
cord-272513-umuiovrd	45	2	will	will	MD
cord-272513-umuiovrd	45	3	use	use	VB
cord-272513-umuiovrd	45	4	bioinformatics	bioinformatics	NN
cord-272513-umuiovrd	45	5	tools	tool	NNS
cord-272513-umuiovrd	45	6	and	and	CC
cord-272513-umuiovrd	45	7	publicly	publicly	RB
cord-272513-umuiovrd	45	8	available	available	JJ
cord-272513-umuiovrd	45	9	samples	sample	NNS
cord-272513-umuiovrd	45	10	to	to	TO
cord-272513-umuiovrd	45	11	explore	explore	VB
cord-272513-umuiovrd	45	12	the	the	DT
cord-272513-umuiovrd	45	13	composition	composition	NN
cord-272513-umuiovrd	45	14	of	of	IN
cord-272513-umuiovrd	45	15	strains	strain	NNS
cord-272513-umuiovrd	45	16	within	within	IN
cord-272513-umuiovrd	45	17	each	each	DT
cord-272513-umuiovrd	45	18	country	country	NN
cord-272513-umuiovrd	45	19	.	.	.
cord-272513-umuiovrd	46	1	We	-PRON-	PRP
cord-272513-umuiovrd	46	2	expect	expect	VBP
cord-272513-umuiovrd	46	3	that	that	IN
cord-272513-umuiovrd	46	4	many	many	JJ
cord-272513-umuiovrd	46	5	strains	strain	NNS
cord-272513-umuiovrd	46	6	will	will	MD
cord-272513-umuiovrd	46	7	show	show	VB
cord-272513-umuiovrd	46	8	evidence	evidence	NN
cord-272513-umuiovrd	46	9	of	of	IN
cord-272513-umuiovrd	46	10	Iranian	iranian	JJ
cord-272513-umuiovrd	46	11	origin	origin	NN
cord-272513-umuiovrd	46	12	.	.	.
cord-272513-umuiovrd	47	1	•	•	NNP
cord-272513-umuiovrd	48	1	The	the	DT
cord-272513-umuiovrd	48	2	aim	aim	NN
cord-272513-umuiovrd	48	3	is	be	VBZ
cord-272513-umuiovrd	48	4	to	to	TO
cord-272513-umuiovrd	48	5	explore	explore	VB
cord-272513-umuiovrd	48	6	the	the	DT
cord-272513-umuiovrd	48	7	structure	structure	NN
cord-272513-umuiovrd	48	8	of	of	IN
cord-272513-umuiovrd	48	9	Middle	Middle	NNP
cord-272513-umuiovrd	48	10	Eastern	eastern	JJ
cord-272513-umuiovrd	48	11	genome	genome	NN
cord-272513-umuiovrd	48	12	strains	strain	NNS
cord-272513-umuiovrd	48	13	using	use	VBG
cord-272513-umuiovrd	48	14	multiple	multiple	JJ
cord-272513-umuiovrd	48	15	sequence	sequence	NN
cord-272513-umuiovrd	48	16	alignment	alignment	NN
cord-272513-umuiovrd	48	17	,	,	,
cord-272513-umuiovrd	48	18	tree	tree	NN
cord-272513-umuiovrd	48	19	generation	generation	NN
cord-272513-umuiovrd	48	20	and	and	CC
cord-272513-umuiovrd	48	21	variant	variant	JJ
cord-272513-umuiovrd	48	22	prediction	prediction	NN
cord-272513-umuiovrd	48	23	(	(	-LRB-
cord-272513-umuiovrd	48	24	and	and	CC
cord-272513-umuiovrd	48	25	others	other	NNS
cord-272513-umuiovrd	48	26	)	)	-RRB-
cord-272513-umuiovrd	48	27	.	.	.
cord-272513-umuiovrd	49	1	If	if	IN
cord-272513-umuiovrd	49	2	we	-PRON-	PRP
cord-272513-umuiovrd	49	3	explore	explore	VBP
cord-272513-umuiovrd	49	4	the	the	DT
cord-272513-umuiovrd	49	5	structure	structure	NN
cord-272513-umuiovrd	49	6	and	and	CC
cord-272513-umuiovrd	49	7	common	common	JJ
cord-272513-umuiovrd	49	8	variants	variant	NNS
cord-272513-umuiovrd	49	9	of	of	IN
cord-272513-umuiovrd	49	10	SARS	SARS	NNP
cord-272513-umuiovrd	49	11	-	-	HYPH
cord-272513-umuiovrd	49	12	CoV-2	CoV-2	NNP
cord-272513-umuiovrd	49	13	strains	strain	NNS
cord-272513-umuiovrd	49	14	in	in	IN
cord-272513-umuiovrd	49	15	these	these	DT
cord-272513-umuiovrd	49	16	populations	population	NNS
cord-272513-umuiovrd	49	17	,	,	,
cord-272513-umuiovrd	49	18	we	-PRON-	PRP
cord-272513-umuiovrd	49	19	expect	expect	VBP
cord-272513-umuiovrd	49	20	to	to	TO
cord-272513-umuiovrd	49	21	learn	learn	VB
cord-272513-umuiovrd	49	22	more	more	JJR
cord-272513-umuiovrd	49	23	about	about	IN
cord-272513-umuiovrd	49	24	how	how	WRB
cord-272513-umuiovrd	49	25	the	the	DT
cord-272513-umuiovrd	49	26	virus	virus	NN
cord-272513-umuiovrd	49	27	spread	spread	VBD
cord-272513-umuiovrd	49	28	.	.	.
cord-272513-umuiovrd	50	1	Sample	sample	NN
cord-272513-umuiovrd	50	2	Source	source	NN
cord-272513-umuiovrd	50	3	:	:	:
cord-272513-umuiovrd	51	1	We	-PRON-	PRP
cord-272513-umuiovrd	51	2	obtained	obtain	VBD
cord-272513-umuiovrd	51	3	the	the	DT
cord-272513-umuiovrd	51	4	publicly	publicly	RB
cord-272513-umuiovrd	51	5	available	available	JJ
cord-272513-umuiovrd	51	6	data	datum	NNS
cord-272513-umuiovrd	51	7	from	from	IN
cord-272513-umuiovrd	51	8	the	the	DT
cord-272513-umuiovrd	51	9	Global	Global	NNP
cord-272513-umuiovrd	51	10	Initiative	Initiative	NNP
cord-272513-umuiovrd	51	11	on	on	IN
cord-272513-umuiovrd	51	12	Sharing	Sharing	NNP
cord-272513-umuiovrd	51	13	All	all	DT
cord-272513-umuiovrd	51	14	Influenza	Influenza	NNP
cord-272513-umuiovrd	51	15	Data	Data	NNP
cord-272513-umuiovrd	51	16	(	(	-LRB-
cord-272513-umuiovrd	51	17	GISAID	GISAID	NNP
cord-272513-umuiovrd	51	18	)	)	-RRB-
cord-272513-umuiovrd	51	19	7	7	CD
cord-272513-umuiovrd	51	20	.	.	.
cord-272513-umuiovrd	52	1	Samples	sample	NNS
cord-272513-umuiovrd	52	2	were	be	VBD
cord-272513-umuiovrd	52	3	also	also	RB
cord-272513-umuiovrd	52	4	filtered	filter	VBN
cord-272513-umuiovrd	52	5	to	to	IN
cord-272513-umuiovrd	52	6	high	high	JJ
cord-272513-umuiovrd	52	7	quality	quality	NN
cord-272513-umuiovrd	52	8	when	when	WRB
cord-272513-umuiovrd	52	9	possible	possible	JJ
cord-272513-umuiovrd	52	10	.	.	.
cord-272513-umuiovrd	53	1	10	10	CD
cord-272513-umuiovrd	53	2	samples	sample	NNS
cord-272513-umuiovrd	53	3	was	be	VBD
cord-272513-umuiovrd	53	4	selected	select	VBN
cord-272513-umuiovrd	53	5	as	as	IN
cord-272513-umuiovrd	53	6	the	the	DT
cord-272513-umuiovrd	53	7	optimum	optimum	JJ
cord-272513-umuiovrd	53	8	number	number	NN
cord-272513-umuiovrd	53	9	to	to	TO
cord-272513-umuiovrd	53	10	cover	cover	VB
cord-272513-umuiovrd	53	11	all	all	DT
cord-272513-umuiovrd	53	12	possible	possible	JJ
cord-272513-umuiovrd	53	13	countries	country	NNS
cord-272513-umuiovrd	53	14	and	and	CC
cord-272513-umuiovrd	53	15	remain	remain	VB
cord-272513-umuiovrd	53	16	within	within	IN
cord-272513-umuiovrd	53	17	alignment	alignment	NN
cord-272513-umuiovrd	53	18	file	file	NN
cord-272513-umuiovrd	53	19	limit	limit	NN
cord-272513-umuiovrd	53	20	of	of	IN
cord-272513-umuiovrd	53	21	size	size	NN
cord-272513-umuiovrd	53	22	4	4	CD
cord-272513-umuiovrd	53	23	Mb	Mb	NNP
cord-272513-umuiovrd	53	24	(	(	-LRB-
cord-272513-umuiovrd	53	25	maximum	maximum	JJ
cord-272513-umuiovrd	53	26	size	size	NN
cord-272513-umuiovrd	53	27	for	for	IN
cord-272513-umuiovrd	53	28	Clustal	Clustal	NNP
cord-272513-umuiovrd	53	29	Omega	Omega	NNP
cord-272513-umuiovrd	53	30	tool	tool	NN
cord-272513-umuiovrd	53	31	)	)	-RRB-
cord-272513-umuiovrd	53	32	.	.	.
cord-272513-umuiovrd	54	1	In	in	IN
cord-272513-umuiovrd	54	2	countries	country	NNS
cord-272513-umuiovrd	54	3	with	with	IN
cord-272513-umuiovrd	54	4	10	10	CD
cord-272513-umuiovrd	54	5	samples	sample	NNS
cord-272513-umuiovrd	54	6	,	,	,
cord-272513-umuiovrd	54	7	to	to	TO
cord-272513-umuiovrd	54	8	prevent	prevent	VB
cord-272513-umuiovrd	54	9	sample	sample	NN
cord-272513-umuiovrd	54	10	sourcing	sourcing	NN
cord-272513-umuiovrd	54	11	from	from	IN
cord-272513-umuiovrd	54	12	same	same	JJ
cord-272513-umuiovrd	54	13	outbreak	outbreak	NN
cord-272513-umuiovrd	54	14	,	,	,
cord-272513-umuiovrd	54	15	the	the	DT
cord-272513-umuiovrd	54	16	5	5	CD
cord-272513-umuiovrd	54	17	earliest	early	JJS
cord-272513-umuiovrd	54	18	and	and	CC
cord-272513-umuiovrd	54	19	5	5	CD
cord-272513-umuiovrd	54	20	most	most	RBS
cord-272513-umuiovrd	54	21	recent	recent	JJ
cord-272513-umuiovrd	54	22	samples	sample	NNS
cord-272513-umuiovrd	54	23	were	be	VBD
cord-272513-umuiovrd	54	24	taken	take	VBN
cord-272513-umuiovrd	54	25	.	.	.
cord-272513-umuiovrd	55	1	All	all	DT
cord-272513-umuiovrd	55	2	samples	sample	NNS
cord-272513-umuiovrd	55	3	were	be	VBD
cord-272513-umuiovrd	55	4	downloaded	download	VBN
cord-272513-umuiovrd	55	5	from	from	IN
cord-272513-umuiovrd	55	6	GISAID	GISAID	NNP
cord-272513-umuiovrd	55	7	and	and	CC
cord-272513-umuiovrd	55	8	then	then	RB
cord-272513-umuiovrd	55	9	concatenated	concatenate	VBD
cord-272513-umuiovrd	55	10	into	into	IN
cord-272513-umuiovrd	55	11	a	a	DT
cord-272513-umuiovrd	55	12	single	single	JJ
cord-272513-umuiovrd	55	13	multi	multi	JJ
cord-272513-umuiovrd	55	14	-	-	JJ
cord-272513-umuiovrd	55	15	sample	sample	JJ
cord-272513-umuiovrd	55	16	file	file	NN
cord-272513-umuiovrd	55	17	and	and	CC
cord-272513-umuiovrd	55	18	saved	save	VBD
cord-272513-umuiovrd	55	19	in	in	IN
cord-272513-umuiovrd	55	20	FASTA	FASTA	NNP
cord-272513-umuiovrd	55	21	format	format	NN
cord-272513-umuiovrd	55	22	.	.	.
cord-272513-umuiovrd	56	1	Multiple	multiple	JJ
cord-272513-umuiovrd	56	2	sequence	sequence	NN
cord-272513-umuiovrd	56	3	alignment	alignment	NN
cord-272513-umuiovrd	56	4	:	:	:
cord-272513-umuiovrd	57	1	Using	use	VBG
cord-272513-umuiovrd	57	2	the	the	DT
cord-272513-umuiovrd	57	3	collected	collect	VBN
cord-272513-umuiovrd	57	4	samples	sample	NNS
cord-272513-umuiovrd	57	5	,	,	,
cord-272513-umuiovrd	57	6	multiple	multiple	JJ
cord-272513-umuiovrd	57	7	sequence	sequence	NN
cord-272513-umuiovrd	57	8	alignment	alignment	NN
cord-272513-umuiovrd	57	9	(	(	-LRB-
cord-272513-umuiovrd	57	10	MSA	MSA	NNP
cord-272513-umuiovrd	57	11	)	)	-RRB-
cord-272513-umuiovrd	57	12	was	be	VBD
cord-272513-umuiovrd	57	13	performed	perform	VBN
cord-272513-umuiovrd	57	14	using	use	VBG
cord-272513-umuiovrd	57	15	Clustal	Clustal	NNP
cord-272513-umuiovrd	57	16	Omega	Omega	NNP
cord-272513-umuiovrd	57	17	(	(	-LRB-
cord-272513-umuiovrd	57	18	https://www.ebi.ac.uk/Tools/	https://www.ebi.ac.uk/Tools/	NNP
cord-272513-umuiovrd	57	19	msa	msa	NNP
cord-272513-umuiovrd	57	20	/	/	SYM
cord-272513-umuiovrd	57	21	clustalo/	clustalo/	CD
cord-272513-umuiovrd	57	22	)	)	-RRB-
cord-272513-umuiovrd	57	23	8	8	CD
cord-272513-umuiovrd	57	24	.	.	.
cord-272513-umuiovrd	58	1	The	the	DT
cord-272513-umuiovrd	58	2	Clustal	Clustal	NNP
cord-272513-umuiovrd	58	3	Omega	Omega	NNP
cord-272513-umuiovrd	58	4	online	online	JJ
cord-272513-umuiovrd	58	5	tool	tool	NN
cord-272513-umuiovrd	58	6	was	be	VBD
cord-272513-umuiovrd	58	7	used	use	VBN
cord-272513-umuiovrd	58	8	to	to	TO
cord-272513-umuiovrd	58	9	perform	perform	VB
cord-272513-umuiovrd	58	10	the	the	DT
cord-272513-umuiovrd	58	11	alignment	alignment	NN
cord-272513-umuiovrd	58	12	(	(	-LRB-
cord-272513-umuiovrd	58	13	found	find	VBN
cord-272513-umuiovrd	58	14	at	at	IN
cord-272513-umuiovrd	58	15	:	:	:
cord-272513-umuiovrd	58	16	https://www.ebi.ac.uk/Tools/msa/clustalo/	https://www.ebi.ac.uk/Tools/msa/clustalo/	NNP
cord-272513-umuiovrd	58	17	)	)	-RRB-
cord-272513-umuiovrd	58	18	.	.	.
cord-272513-umuiovrd	59	1	The	the	DT
cord-272513-umuiovrd	59	2	online	online	JJ
cord-272513-umuiovrd	59	3	tools	tool	NNS
cord-272513-umuiovrd	59	4	allows	allow	VBZ
cord-272513-umuiovrd	59	5	up	up	IN
cord-272513-umuiovrd	59	6	to	to	TO
cord-272513-umuiovrd	59	7	4000	4000	CD
cord-272513-umuiovrd	59	8	sequences	sequence	NNS
cord-272513-umuiovrd	59	9	or	or	CC
cord-272513-umuiovrd	59	10	a	a	DT
cord-272513-umuiovrd	59	11	maximum	maximum	JJ
cord-272513-umuiovrd	59	12	file	file	NN
cord-272513-umuiovrd	59	13	size	size	NN
cord-272513-umuiovrd	59	14	of	of	IN
cord-272513-umuiovrd	59	15	4	4	CD
cord-272513-umuiovrd	59	16	MB	mb	NN
cord-272513-umuiovrd	59	17	,	,	,
cord-272513-umuiovrd	59	18	therefore	therefore	RB
cord-272513-umuiovrd	59	19	the	the	DT
cord-272513-umuiovrd	59	20	maximum	maximum	JJ
cord-272513-umuiovrd	59	21	number	number	NN
cord-272513-umuiovrd	59	22	of	of	IN
cord-272513-umuiovrd	59	23	samples	sample	NNS
cord-272513-umuiovrd	59	24	was	be	VBD
cord-272513-umuiovrd	59	25	used	use	VBN
cord-272513-umuiovrd	59	26	.	.	.
cord-272513-umuiovrd	60	1	The	the	DT
cord-272513-umuiovrd	60	2	concatenated	concatenated	JJ
cord-272513-umuiovrd	60	3	file	file	NN
cord-272513-umuiovrd	60	4	of	of	IN
cord-272513-umuiovrd	60	5	samples	sample	NNS
cord-272513-umuiovrd	60	6	was	be	VBD
cord-272513-umuiovrd	60	7	uploaded	upload	VBN
cord-272513-umuiovrd	60	8	to	to	IN
cord-272513-umuiovrd	60	9	the	the	DT
cord-272513-umuiovrd	60	10	online	online	JJ
cord-272513-umuiovrd	60	11	tool	tool	NN
cord-272513-umuiovrd	60	12	.	.	.
cord-272513-umuiovrd	61	1	For	for	IN
cord-272513-umuiovrd	61	2	step	step	NN
cord-272513-umuiovrd	61	3	2	2	CD
cord-272513-umuiovrd	61	4	,	,	,
cord-272513-umuiovrd	61	5	the	the	DT
cord-272513-umuiovrd	61	6	output	output	NN
cord-272513-umuiovrd	61	7	parameters	parameter	NNS
cord-272513-umuiovrd	61	8	selected	select	VBN
cord-272513-umuiovrd	61	9	were	be	VBD
cord-272513-umuiovrd	61	10	PEARSON	PEARSON	NNP
cord-272513-umuiovrd	61	11	/	/	SYM
cord-272513-umuiovrd	61	12	FASTA	FASTA	NNP
cord-272513-umuiovrd	61	13	.	.	.
cord-272513-umuiovrd	62	1	All	all	DT
cord-272513-umuiovrd	62	2	other	other	JJ
cord-272513-umuiovrd	62	3	options	option	NNS
cord-272513-umuiovrd	62	4	were	be	VBD
cord-272513-umuiovrd	62	5	kept	keep	VBN
cord-272513-umuiovrd	62	6	at	at	IN
cord-272513-umuiovrd	62	7	the	the	DT
cord-272513-umuiovrd	62	8	default	default	NN
cord-272513-umuiovrd	62	9	option	option	NN
cord-272513-umuiovrd	62	10	.	.	.
cord-272513-umuiovrd	63	1	The	the	DT
cord-272513-umuiovrd	63	2	output	output	NN
cord-272513-umuiovrd	63	3	file	file	NN
cord-272513-umuiovrd	63	4	generated	generate	VBN
cord-272513-umuiovrd	63	5	is	be	VBZ
cord-272513-umuiovrd	63	6	an	an	DT
cord-272513-umuiovrd	63	7	alignment	alignment	NN
cord-272513-umuiovrd	63	8	file	file	NN
cord-272513-umuiovrd	63	9	;	;	:
cord-272513-umuiovrd	63	10	the	the	DT
cord-272513-umuiovrd	63	11	file	file	NN
cord-272513-umuiovrd	63	12	consists	consist	VBZ
cord-272513-umuiovrd	63	13	of	of	IN
cord-272513-umuiovrd	63	14	all	all	DT
cord-272513-umuiovrd	63	15	sequences	sequence	NNS
cord-272513-umuiovrd	63	16	with	with	IN
cord-272513-umuiovrd	63	17	gaps	gap	NNS
cord-272513-umuiovrd	63	18	denoted	denote	VBN
cord-272513-umuiovrd	63	19	by	by	IN
cord-272513-umuiovrd	63	20	'	'	``
cord-272513-umuiovrd	63	21	-	-	HYPH
cord-272513-umuiovrd	63	22	'	'	''
cord-272513-umuiovrd	63	23	.	.	.
cord-272513-umuiovrd	64	1	The	the	DT
cord-272513-umuiovrd	64	2	output	output	NN
cord-272513-umuiovrd	64	3	file	file	NN
cord-272513-umuiovrd	64	4	format	format	NN
cord-272513-umuiovrd	64	5	is	be	VBZ
cord-272513-umuiovrd	64	6	also	also	RB
cord-272513-umuiovrd	64	7	a	a	DT
cord-272513-umuiovrd	64	8	FASTA	FASTA	NNP
cord-272513-umuiovrd	64	9	file	file	NN
cord-272513-umuiovrd	64	10	.	.	.
cord-272513-umuiovrd	65	1	Variant	variant	NN
cord-272513-umuiovrd	65	2	identification	identification	NN
cord-272513-umuiovrd	65	3	:	:	:
cord-272513-umuiovrd	65	4	Variant	variant	NN
cord-272513-umuiovrd	65	5	calling	calling	NN
cord-272513-umuiovrd	65	6	was	be	VBD
cord-272513-umuiovrd	65	7	performed	perform	VBN
cord-272513-umuiovrd	65	8	using	use	VBG
cord-272513-umuiovrd	65	9	the	the	DT
cord-272513-umuiovrd	65	10	alignment	alignment	NN
cord-272513-umuiovrd	65	11	FASTA	FASTA	NNP
cord-272513-umuiovrd	65	12	file	file	NN
cord-272513-umuiovrd	65	13	and	and	CC
cord-272513-umuiovrd	65	14	the	the	DT
cord-272513-umuiovrd	65	15	SNP	SNP	NNP
cord-272513-umuiovrd	65	16	extraction	extraction	NN
cord-272513-umuiovrd	65	17	tool	tool	NN
cord-272513-umuiovrd	65	18	snp	snp	NNP
cord-272513-umuiovrd	65	19	-	-	HYPH
cord-272513-umuiovrd	65	20	sites	site	NNS
cord-272513-umuiovrd	65	21	9	9	CD
cord-272513-umuiovrd	65	22	(	(	-LRB-
cord-272513-umuiovrd	65	23	https://github.com/sanger-pathogens/snp-sites	https://github.com/sanger-pathogens/snp-sites	NNP
cord-272513-umuiovrd	65	24	)	)	-RRB-
cord-272513-umuiovrd	65	25	.	.	.
cord-272513-umuiovrd	66	1	These	these	DT
cord-272513-umuiovrd	66	2	tools	tool	NNS
cord-272513-umuiovrd	66	3	identify	identify	VBP
cord-272513-umuiovrd	66	4	the	the	DT
cord-272513-umuiovrd	66	5	SNP	SNP	NNP
cord-272513-umuiovrd	66	6	sites	site	NNS
cord-272513-umuiovrd	66	7	by	by	IN
cord-272513-umuiovrd	66	8	taking	take	VBG
cord-272513-umuiovrd	66	9	a	a	DT
cord-272513-umuiovrd	66	10	multi	multi	JJ
cord-272513-umuiovrd	66	11	-	-	JJ
cord-272513-umuiovrd	66	12	sample	sample	JJ
cord-272513-umuiovrd	66	13	FASTA	FASTA	NNP
cord-272513-umuiovrd	66	14	file	file	NN
cord-272513-umuiovrd	66	15	as	as	IN
cord-272513-umuiovrd	66	16	input	input	NN
cord-272513-umuiovrd	66	17	.	.	.
cord-272513-umuiovrd	67	1	The	the	DT
cord-272513-umuiovrd	67	2	program	program	NN
cord-272513-umuiovrd	67	3	then	then	RB
cord-272513-umuiovrd	67	4	restructures	restructure	VBZ
cord-272513-umuiovrd	67	5	the	the	DT
cord-272513-umuiovrd	67	6	data	datum	NNS
cord-272513-umuiovrd	67	7	as	as	IN
cord-272513-umuiovrd	67	8	a	a	DT
cord-272513-umuiovrd	67	9	variant	variant	JJ
cord-272513-umuiovrd	67	10	call	call	NN
cord-272513-umuiovrd	67	11	format	format	NN
cord-272513-umuiovrd	67	12	(	(	-LRB-
cord-272513-umuiovrd	67	13	VCF	VCF	NNP
cord-272513-umuiovrd	67	14	)	)	-RRB-
cord-272513-umuiovrd	67	15	file	file	NN
cord-272513-umuiovrd	67	16	.	.	.
cord-272513-umuiovrd	68	1	The	the	DT
cord-272513-umuiovrd	68	2	VCF	VCF	NNP
cord-272513-umuiovrd	68	3	file	file	NN
cord-272513-umuiovrd	68	4	provides	provide	VBZ
cord-272513-umuiovrd	68	5	a	a	DT
cord-272513-umuiovrd	68	6	clear	clear	JJ
cord-272513-umuiovrd	68	7	mapping	mapping	NN
cord-272513-umuiovrd	68	8	of	of	IN
cord-272513-umuiovrd	68	9	SNPs	SNPs	NNPS
cord-272513-umuiovrd	68	10	from	from	IN
cord-272513-umuiovrd	68	11	the	the	DT
cord-272513-umuiovrd	68	12	aligned	align	VBN
cord-272513-umuiovrd	68	13	sequences	sequence	NNS
cord-272513-umuiovrd	68	14	-this	-this	WP
cord-272513-umuiovrd	68	15	allows	allow	VBZ
cord-272513-umuiovrd	68	16	us	-PRON-	PRP
cord-272513-umuiovrd	68	17	to	to	TO
cord-272513-umuiovrd	68	18	easily	easily	RB
cord-272513-umuiovrd	68	19	identify	identify	VB
cord-272513-umuiovrd	68	20	the	the	DT
cord-272513-umuiovrd	68	21	SNP	SNP	NNP
cord-272513-umuiovrd	68	22	location	location	NN
cord-272513-umuiovrd	68	23	and	and	CC
cord-272513-umuiovrd	68	24	the	the	DT
cord-272513-umuiovrd	68	25	genotype	genotype	NN
cord-272513-umuiovrd	68	26	for	for	IN
cord-272513-umuiovrd	68	27	each	each	DT
cord-272513-umuiovrd	68	28	sample	sample	NN
cord-272513-umuiovrd	68	29	at	at	IN
cord-272513-umuiovrd	68	30	a	a	DT
cord-272513-umuiovrd	68	31	given	give	VBN
cord-272513-umuiovrd	68	32	locus	locus	NN
cord-272513-umuiovrd	68	33	.	.	.
cord-272513-umuiovrd	69	1	In	in	IN
cord-272513-umuiovrd	69	2	the	the	DT
cord-272513-umuiovrd	69	3	outputted	output	VBN
cord-272513-umuiovrd	69	4	VCF	VCF	NNP
cord-272513-umuiovrd	69	5	file	file	NN
cord-272513-umuiovrd	69	6	,	,	,
cord-272513-umuiovrd	69	7	the	the	DT
cord-272513-umuiovrd	69	8	rows	row	NNS
cord-272513-umuiovrd	69	9	correspond	correspond	VBP
cord-272513-umuiovrd	69	10	with	with	IN
cord-272513-umuiovrd	69	11	each	each	DT
cord-272513-umuiovrd	69	12	unique	unique	JJ
cord-272513-umuiovrd	69	13	variant	variant	NN
cord-272513-umuiovrd	69	14	and	and	CC
cord-272513-umuiovrd	69	15	the	the	DT
cord-272513-umuiovrd	69	16	column	column	NN
cord-272513-umuiovrd	69	17	provides	provide	VBZ
cord-272513-umuiovrd	69	18	the	the	DT
cord-272513-umuiovrd	69	19	genotype	genotype	NN
cord-272513-umuiovrd	69	20	at	at	IN
cord-272513-umuiovrd	69	21	the	the	DT
cord-272513-umuiovrd	69	22	given	give	VBN
cord-272513-umuiovrd	69	23	site	site	NN
cord-272513-umuiovrd	69	24	.	.	.
cord-272513-umuiovrd	70	1	We	-PRON-	PRP
cord-272513-umuiovrd	70	2	used	use	VBD
cord-272513-umuiovrd	70	3	SNP	SNP	NNP
cord-272513-umuiovrd	70	4	-	-	HYPH
cord-272513-umuiovrd	70	5	eff	eff	NNP
cord-272513-umuiovrd	70	6	10	10	CD
cord-272513-umuiovrd	70	7	to	to	TO
cord-272513-umuiovrd	70	8	perform	perform	VB
cord-272513-umuiovrd	70	9	the	the	DT
cord-272513-umuiovrd	70	10	variant	variant	JJ
cord-272513-umuiovrd	70	11	annotation	annotation	NN
cord-272513-umuiovrd	70	12	information	information	NN
cord-272513-umuiovrd	70	13	such	such	JJ
cord-272513-umuiovrd	70	14	as	as	IN
cord-272513-umuiovrd	70	15	the	the	DT
cord-272513-umuiovrd	70	16	variant	variant	JJ
cord-272513-umuiovrd	70	17	definition	definition	NN
cord-272513-umuiovrd	70	18	and	and	CC
cord-272513-umuiovrd	70	19	the	the	DT
cord-272513-umuiovrd	70	20	overlapping	overlap	VBG
cord-272513-umuiovrd	70	21	gene	gene	NN
cord-272513-umuiovrd	70	22	(	(	-LRB-
cord-272513-umuiovrd	70	23	found	find	VBN
cord-272513-umuiovrd	70	24	at	at	IN
cord-272513-umuiovrd	70	25	:	:	:
cord-272513-umuiovrd	70	26	(	(	-LRB-
cord-272513-umuiovrd	70	27	https://pcingola.github.io/SnpEff/SnpEff.html	https://pcingola.github.io/snpeff/snpeff.html	ADD
cord-272513-umuiovrd	70	28	)	)	-RRB-
cord-272513-umuiovrd	70	29	.	.	.
cord-272513-umuiovrd	71	1	SnpEff	SnpEff	NNP
cord-272513-umuiovrd	71	2	also	also	RB
cord-272513-umuiovrd	71	3	predicts	predict	VBZ
cord-272513-umuiovrd	71	4	the	the	DT
cord-272513-umuiovrd	71	5	effect	effect	NN
cord-272513-umuiovrd	71	6	of	of	IN
cord-272513-umuiovrd	71	7	the	the	DT
cord-272513-umuiovrd	71	8	variants	variant	NNS
cord-272513-umuiovrd	71	9	.	.	.
cord-272513-umuiovrd	72	1	SNPeff	SNPeff	NNP
cord-272513-umuiovrd	72	2	is	be	VBZ
cord-272513-umuiovrd	72	3	integrated	integrate	VBN
cord-272513-umuiovrd	72	4	into	into	IN
cord-272513-umuiovrd	72	5	the	the	DT
cord-272513-umuiovrd	72	6	Galaxy	Galaxy	NNP
cord-272513-umuiovrd	72	7	web	web	NN
cord-272513-umuiovrd	72	8	-	-	HYPH
cord-272513-umuiovrd	72	9	based	base	VBN
cord-272513-umuiovrd	72	10	tool	tool	NN
cord-272513-umuiovrd	72	11	for	for	IN
cord-272513-umuiovrd	72	12	bioinformatics	bioinformatics	NN
cord-272513-umuiovrd	72	13	analysis	analysis	NN
cord-272513-umuiovrd	72	14	(	(	-LRB-
cord-272513-umuiovrd	72	15	found	find	VBN
cord-272513-umuiovrd	72	16	at	at	IN
cord-272513-umuiovrd	72	17	:	:	:
cord-272513-umuiovrd	72	18	usegalaxy.org	usegalaxy.org	NN
cord-272513-umuiovrd	72	19	)	)	-RRB-
cord-272513-umuiovrd	72	20	11	11	CD
cord-272513-umuiovrd	72	21	.	.	.
cord-272513-umuiovrd	73	1	We	-PRON-	PRP
cord-272513-umuiovrd	73	2	utilised	utilise	VBD
cord-272513-umuiovrd	73	3	the	the	DT
cord-272513-umuiovrd	73	4	Galaxy	Galaxy	NNP
cord-272513-umuiovrd	73	5	platform	platform	NN
cord-272513-umuiovrd	73	6	and	and	CC
cord-272513-umuiovrd	73	7	uploaded	upload	VBD
cord-272513-umuiovrd	73	8	our	-PRON-	PRP$
cord-272513-umuiovrd	73	9	VCF	VCF	NNP
cord-272513-umuiovrd	73	10	file	file	NN
cord-272513-umuiovrd	73	11	to	to	IN
cord-272513-umuiovrd	73	12	Galaxy	Galaxy	NNP
cord-272513-umuiovrd	73	13	using	use	VBG
cord-272513-umuiovrd	73	14	their	-PRON-	PRP$
cord-272513-umuiovrd	73	15	online	online	JJ
cord-272513-umuiovrd	73	16	upload	upload	NN
cord-272513-umuiovrd	73	17	tool	tool	NN
cord-272513-umuiovrd	73	18	.	.	.
cord-272513-umuiovrd	74	1	To	to	TO
cord-272513-umuiovrd	74	2	annotate	annotate	VB
cord-272513-umuiovrd	74	3	variants	variant	NNS
cord-272513-umuiovrd	74	4	,	,	,
cord-272513-umuiovrd	74	5	you	-PRON-	PRP
cord-272513-umuiovrd	74	6	must	must	MD
cord-272513-umuiovrd	74	7	first	first	RB
cord-272513-umuiovrd	74	8	build	build	VB
cord-272513-umuiovrd	74	9	a	a	DT
cord-272513-umuiovrd	74	10	database	database	NN
cord-272513-umuiovrd	74	11	from	from	IN
cord-272513-umuiovrd	74	12	the	the	DT
cord-272513-umuiovrd	74	13	reference	reference	NN
cord-272513-umuiovrd	74	14	genome	genome	NN
cord-272513-umuiovrd	74	15	.	.	.
cord-272513-umuiovrd	75	1	This	this	DT
cord-272513-umuiovrd	75	2	is	be	VBZ
cord-272513-umuiovrd	75	3	performed	perform	VBN
cord-272513-umuiovrd	75	4	using	use	VBG
cord-272513-umuiovrd	75	5	the	the	DT
cord-272513-umuiovrd	75	6	"	"	``
cord-272513-umuiovrd	75	7	SnpEff	SnpEff	NNP
cord-272513-umuiovrd	75	8	build	build	VB
cord-272513-umuiovrd	75	9	"	"	''
cord-272513-umuiovrd	75	10	tool	tool	NN
cord-272513-umuiovrd	75	11	on	on	IN
cord-272513-umuiovrd	75	12	Galaxy	Galaxy	NNP
cord-272513-umuiovrd	75	13	.	.	.
cord-272513-umuiovrd	76	1	To	to	TO
cord-272513-umuiovrd	76	2	create	create	VB
cord-272513-umuiovrd	76	3	the	the	DT
cord-272513-umuiovrd	76	4	SnpEff	SnpEff	NNP
cord-272513-umuiovrd	76	5	database	database	NN
cord-272513-umuiovrd	76	6	,	,	,
cord-272513-umuiovrd	76	7	we	-PRON-	PRP
cord-272513-umuiovrd	76	8	downloaded	download	VBD
cord-272513-umuiovrd	76	9	data	datum	NNS
cord-272513-umuiovrd	76	10	from	from	IN
cord-272513-umuiovrd	76	11	NCBI	NCBI	NNP
cord-272513-umuiovrd	76	12	for	for	IN
cord-272513-umuiovrd	76	13	Wuhan	Wuhan	NNP
cord-272513-umuiovrd	76	14	reference	reference	NN
cord-272513-umuiovrd	76	15	NC_045512.2	NC_045512.2	NNP
cord-272513-umuiovrd	76	16	and	and	CC
cord-272513-umuiovrd	76	17	uploaded	upload	VBN
cord-272513-umuiovrd	76	18	to	to	IN
cord-272513-umuiovrd	76	19	Galaxy	Galaxy	NNP
cord-272513-umuiovrd	76	20	.	.	.
cord-272513-umuiovrd	77	1	To	to	TO
cord-272513-umuiovrd	77	2	build	build	VB
cord-272513-umuiovrd	77	3	the	the	DT
cord-272513-umuiovrd	77	4	database	database	NN
cord-272513-umuiovrd	77	5	,	,	,
cord-272513-umuiovrd	77	6	we	-PRON-	PRP
cord-272513-umuiovrd	77	7	directed	direct	VBD
cord-272513-umuiovrd	77	8	to	to	IN
cord-272513-umuiovrd	77	9	NCBI	NCBI	NNP
cord-272513-umuiovrd	77	10	and	and	CC
cord-272513-umuiovrd	77	11	searched	search	VBD
cord-272513-umuiovrd	77	12	for	for	IN
cord-272513-umuiovrd	77	13	NC_045512	NC_045512	NNP
cord-272513-umuiovrd	77	14	.	.	.
cord-272513-umuiovrd	78	1	We	-PRON-	PRP
cord-272513-umuiovrd	78	2	then	then	RB
cord-272513-umuiovrd	78	3	downloaded	download	VBD
cord-272513-umuiovrd	78	4	the	the	DT
cord-272513-umuiovrd	78	5	corresponding	corresponding	JJ
cord-272513-umuiovrd	78	6	GFF	GFF	NNP
cord-272513-umuiovrd	78	7	file	file	NN
cord-272513-umuiovrd	78	8	,	,	,
cord-272513-umuiovrd	78	9	which	which	WDT
cord-272513-umuiovrd	78	10	contains	contain	VBZ
cord-272513-umuiovrd	78	11	the	the	DT
cord-272513-umuiovrd	78	12	annotations	annotation	NNS
cord-272513-umuiovrd	78	13	,	,	,
cord-272513-umuiovrd	78	14	and	and	CC
cord-272513-umuiovrd	78	15	the	the	DT
cord-272513-umuiovrd	78	16	FASTA	FASTA	NNP
cord-272513-umuiovrd	78	17	file	file	NN
cord-272513-umuiovrd	78	18	,	,	,
cord-272513-umuiovrd	78	19	which	which	WDT
cord-272513-umuiovrd	78	20	contains	contain	VBZ
cord-272513-umuiovrd	78	21	the	the	DT
cord-272513-umuiovrd	78	22	entire	entire	JJ
cord-272513-umuiovrd	78	23	genome	genome	NN
cord-272513-umuiovrd	78	24	.	.	.
cord-272513-umuiovrd	79	1	We	-PRON-	PRP
cord-272513-umuiovrd	79	2	then	then	RB
cord-272513-umuiovrd	79	3	selected	select	VBD
cord-272513-umuiovrd	79	4	the	the	DT
cord-272513-umuiovrd	79	5	build	build	NN
cord-272513-umuiovrd	79	6	database	database	NN
cord-272513-umuiovrd	79	7	option	option	NN
cord-272513-umuiovrd	79	8	.	.	.
cord-272513-umuiovrd	80	1	Once	once	IN
cord-272513-umuiovrd	80	2	the	the	DT
cord-272513-umuiovrd	80	3	database	database	NN
cord-272513-umuiovrd	80	4	was	be	VBD
cord-272513-umuiovrd	80	5	built	build	VBN
cord-272513-umuiovrd	80	6	,	,	,
cord-272513-umuiovrd	80	7	we	-PRON-	PRP
cord-272513-umuiovrd	80	8	selected	select	VBD
cord-272513-umuiovrd	80	9	the	the	DT
cord-272513-umuiovrd	80	10	"	"	``
cord-272513-umuiovrd	80	11	SnpEff	SnpEff	NNP
cord-272513-umuiovrd	80	12	eff	eff	NN
cord-272513-umuiovrd	80	13	"	"	''
cord-272513-umuiovrd	80	14	tool	tool	NN
cord-272513-umuiovrd	80	15	to	to	TO
cord-272513-umuiovrd	80	16	annotate	annotate	VB
cord-272513-umuiovrd	80	17	variants	variant	NNS
cord-272513-umuiovrd	80	18	.	.	.
cord-272513-umuiovrd	81	1	Galaxy	Galaxy	NNP
cord-272513-umuiovrd	81	2	populates	populate	VBZ
cord-272513-umuiovrd	81	3	the	the	DT
cord-272513-umuiovrd	81	4	fields	field	NNS
cord-272513-umuiovrd	81	5	for	for	IN
cord-272513-umuiovrd	81	6	VCF	VCF	NNP
cord-272513-umuiovrd	81	7	with	with	IN
cord-272513-umuiovrd	81	8	the	the	DT
cord-272513-umuiovrd	81	9	uploaded	upload	VBN
cord-272513-umuiovrd	81	10	file	file	NN
cord-272513-umuiovrd	81	11	from	from	IN
cord-272513-umuiovrd	81	12	the	the	DT
cord-272513-umuiovrd	81	13	previous	previous	JJ
cord-272513-umuiovrd	81	14	step	step	NN
cord-272513-umuiovrd	81	15	.	.	.
cord-272513-umuiovrd	82	1	The	the	DT
cord-272513-umuiovrd	82	2	output	output	NN
cord-272513-umuiovrd	82	3	format	format	NN
cord-272513-umuiovrd	82	4	is	be	VBZ
cord-272513-umuiovrd	82	5	selected	select	VBN
cord-272513-umuiovrd	82	6	as	as	IN
cord-272513-umuiovrd	82	7	VCF	VCF	NNP
cord-272513-umuiovrd	82	8	and	and	CC
cord-272513-umuiovrd	82	9	CSV	CSV	NNP
cord-272513-umuiovrd	82	10	report	report	NN
cord-272513-umuiovrd	82	11	was	be	VBD
cord-272513-umuiovrd	82	12	also	also	RB
cord-272513-umuiovrd	82	13	selected	select	VBN
cord-272513-umuiovrd	82	14	for	for	IN
cord-272513-umuiovrd	82	15	additional	additional	JJ
cord-272513-umuiovrd	82	16	useful	useful	JJ
cord-272513-umuiovrd	82	17	information	information	NN
cord-272513-umuiovrd	82	18	for	for	IN
cord-272513-umuiovrd	82	19	downstream	downstream	JJ
cord-272513-umuiovrd	82	20	analysis	analysis	NN
cord-272513-umuiovrd	82	21	.	.	.
cord-272513-umuiovrd	83	1	For	for	IN
cord-272513-umuiovrd	83	2	Genome	genome	NN
cord-272513-umuiovrd	83	3	source	source	NN
cord-272513-umuiovrd	83	4	parameter	parameter	NN
cord-272513-umuiovrd	83	5	,	,	,
cord-272513-umuiovrd	83	6	the	the	DT
cord-272513-umuiovrd	83	7	option	option	NN
cord-272513-umuiovrd	83	8	"	"	``
cord-272513-umuiovrd	83	9	Custom	Custom	NNP
cord-272513-umuiovrd	83	10	"	"	''
cord-272513-umuiovrd	83	11	was	be	VBD
cord-272513-umuiovrd	83	12	selected	select	VBN
cord-272513-umuiovrd	83	13	to	to	TO
cord-272513-umuiovrd	83	14	use	use	VB
cord-272513-umuiovrd	83	15	the	the	DT
cord-272513-umuiovrd	83	16	newly	newly	RB
cord-272513-umuiovrd	83	17	created	create	VBN
cord-272513-umuiovrd	83	18	database	database	NN
cord-272513-umuiovrd	83	19	.	.	.
cord-272513-umuiovrd	84	1	Other	other	JJ
cord-272513-umuiovrd	84	2	default	default	NN
cord-272513-umuiovrd	84	3	parameters	parameter	NNS
cord-272513-umuiovrd	84	4	were	be	VBD
cord-272513-umuiovrd	84	5	used	use	VBN
cord-272513-umuiovrd	84	6	including	include	VBG
cord-272513-umuiovrd	84	7	5000	5000	CD
cord-272513-umuiovrd	84	8	bases	basis	NNS
cord-272513-umuiovrd	84	9	for	for	IN
cord-272513-umuiovrd	84	10	Upstream	Upstream	NNP
cord-272513-umuiovrd	84	11	/	/	SYM
cord-272513-umuiovrd	84	12	Downstream	downstream	JJ
cord-272513-umuiovrd	84	13	length	length	NN
cord-272513-umuiovrd	84	14	and	and	CC
cord-272513-umuiovrd	84	15	2	2	CD
cord-272513-umuiovrd	84	16	bases	basis	NNS
cord-272513-umuiovrd	84	17	as	as	IN
cord-272513-umuiovrd	84	18	set	set	VBN
cord-272513-umuiovrd	84	19	size	size	NN
cord-272513-umuiovrd	84	20	for	for	IN
cord-272513-umuiovrd	84	21	splice	splice	NN
cord-272513-umuiovrd	84	22	sites	site	NNS
cord-272513-umuiovrd	84	23	(	(	-LRB-
cord-272513-umuiovrd	84	24	donors	donor	NNS
cord-272513-umuiovrd	84	25	and	and	CC
cord-272513-umuiovrd	84	26	acceptor	acceptor	NN
cord-272513-umuiovrd	84	27	)	)	-RRB-
cord-272513-umuiovrd	84	28	in	in	IN
cord-272513-umuiovrd	84	29	bases	basis	NNS
cord-272513-umuiovrd	84	30	.	.	.
cord-272513-umuiovrd	85	1	All	all	DT
cord-272513-umuiovrd	85	2	filter	filter	NN
cord-272513-umuiovrd	85	3	output	output	NN
cord-272513-umuiovrd	85	4	and	and	CC
cord-272513-umuiovrd	85	5	additional	additional	JJ
cord-272513-umuiovrd	85	6	annotation	annotation	NN
cord-272513-umuiovrd	85	7	options	option	NNS
cord-272513-umuiovrd	85	8	were	be	VBD
cord-272513-umuiovrd	85	9	deselected	deselecte	VBN
cord-272513-umuiovrd	85	10	and	and	CC
cord-272513-umuiovrd	85	11	analysis	analysis	NN
cord-272513-umuiovrd	85	12	was	be	VBD
cord-272513-umuiovrd	85	13	ran	run	VBN
cord-272513-umuiovrd	85	14	.	.	.
cord-272513-umuiovrd	86	1	Once	once	IN
cord-272513-umuiovrd	86	2	the	the	DT
cord-272513-umuiovrd	86	3	analysis	analysis	NN
cord-272513-umuiovrd	86	4	was	be	VBD
cord-272513-umuiovrd	86	5	executed	execute	VBN
cord-272513-umuiovrd	86	6	,	,	,
cord-272513-umuiovrd	86	7	the	the	DT
cord-272513-umuiovrd	86	8	annotation	annotation	NN
cord-272513-umuiovrd	86	9	data	data	NN
cord-272513-umuiovrd	86	10	is	be	VBZ
cord-272513-umuiovrd	86	11	outputted	output	VBN
cord-272513-umuiovrd	86	12	as	as	IN
cord-272513-umuiovrd	86	13	an	an	DT
cord-272513-umuiovrd	86	14	annotated	annotated	JJ
cord-272513-umuiovrd	86	15	VCF	VCF	NNP
cord-272513-umuiovrd	86	16	and	and	CC
cord-272513-umuiovrd	86	17	a	a	DT
cord-272513-umuiovrd	86	18	HTML	html	NN
cord-272513-umuiovrd	86	19	report	report	NN
cord-272513-umuiovrd	86	20	file	file	NN
cord-272513-umuiovrd	86	21	.	.	.
cord-272513-umuiovrd	87	1	Data	data	NN
cord-272513-umuiovrd	87	2	visualisation	visualisation	NN
cord-272513-umuiovrd	87	3	:	:	:
cord-272513-umuiovrd	87	4	Once	once	RB
cord-272513-umuiovrd	87	5	the	the	DT
cord-272513-umuiovrd	87	6	annotated	annotate	VBN
cord-272513-umuiovrd	87	7	VCF	VCF	NNP
cord-272513-umuiovrd	87	8	was	be	VBD
cord-272513-umuiovrd	87	9	generated	generate	VBN
cord-272513-umuiovrd	87	10	,	,	,
cord-272513-umuiovrd	87	11	the	the	DT
cord-272513-umuiovrd	87	12	VCF	VCF	NNP
cord-272513-umuiovrd	87	13	was	be	VBD
cord-272513-umuiovrd	87	14	imported	import	VBN
cord-272513-umuiovrd	87	15	to	to	IN
cord-272513-umuiovrd	87	16	R	r	NN
cord-272513-umuiovrd	87	17	for	for	IN
cord-272513-umuiovrd	87	18	extraction	extraction	NN
cord-272513-umuiovrd	87	19	of	of	IN
cord-272513-umuiovrd	87	20	the	the	DT
cord-272513-umuiovrd	87	21	variant	variant	JJ
cord-272513-umuiovrd	87	22	annotation	annotation	NN
cord-272513-umuiovrd	87	23	information	information	NN
cord-272513-umuiovrd	87	24	.	.	.
cord-272513-umuiovrd	88	1	The	the	DT
cord-272513-umuiovrd	88	2	annotated	annotated	JJ
cord-272513-umuiovrd	88	3	data	datum	NNS
cord-272513-umuiovrd	88	4	was	be	VBD
cord-272513-umuiovrd	88	5	imported	import	VBN
cord-272513-umuiovrd	88	6	,	,	,
cord-272513-umuiovrd	88	7	manipulated	manipulate	VBN
cord-272513-umuiovrd	88	8	and	and	CC
cord-272513-umuiovrd	88	9	plotted	plot	VBN
cord-272513-umuiovrd	88	10	using	use	VBG
cord-272513-umuiovrd	88	11	R	R	NNP
cord-272513-umuiovrd	88	12	v3.6.2	v3.6.2	NNP
cord-272513-umuiovrd	88	13	12	12	CD
cord-272513-umuiovrd	88	14	.	.	.
cord-272513-umuiovrd	89	1	The	the	DT
cord-272513-umuiovrd	89	2	dplyr	dplyr	NNS
cord-272513-umuiovrd	89	3	v0.8.4	v0.8.4	NNP
cord-272513-umuiovrd	89	4	package	package	NN
cord-272513-umuiovrd	89	5	was	be	VBD
cord-272513-umuiovrd	89	6	used	use	VBN
cord-272513-umuiovrd	89	7	to	to	TO
cord-272513-umuiovrd	89	8	summarise	summarise	VB
cord-272513-umuiovrd	89	9	and	and	CC
cord-272513-umuiovrd	89	10	align	align	VB
cord-272513-umuiovrd	89	11	the	the	DT
cord-272513-umuiovrd	89	12	data	datum	NNS
cord-272513-umuiovrd	89	13	13	13	CD
cord-272513-umuiovrd	89	14	.	.	.
cord-272513-umuiovrd	90	1	The	the	DT
cord-272513-umuiovrd	90	2	ggplot2	ggplot2	NN
cord-272513-umuiovrd	90	3	package	package	NN
cord-272513-umuiovrd	90	4	was	be	VBD
cord-272513-umuiovrd	90	5	used	use	VBN
cord-272513-umuiovrd	90	6	to	to	TO
cord-272513-umuiovrd	90	7	align	align	VB
cord-272513-umuiovrd	90	8	the	the	DT
cord-272513-umuiovrd	90	9	identified	identify	VBN
cord-272513-umuiovrd	90	10	variants	variant	NNS
cord-272513-umuiovrd	90	11	and	and	CC
cord-272513-umuiovrd	90	12	visualise	visualise	VB
cord-272513-umuiovrd	90	13	the	the	DT
cord-272513-umuiovrd	90	14	types	type	NNS
cord-272513-umuiovrd	90	15	of	of	IN
cord-272513-umuiovrd	90	16	mutations	mutation	NNS
cord-272513-umuiovrd	90	17	that	that	WDT
cord-272513-umuiovrd	90	18	re	re	VBP
cord-272513-umuiovrd	90	19	-	-	NN
cord-272513-umuiovrd	90	20	occur	occur	VBP
cord-272513-umuiovrd	90	21	14	14	CD
cord-272513-umuiovrd	90	22	.	.	.
cord-272513-umuiovrd	91	1	The	the	DT
cord-272513-umuiovrd	91	2	x	x	NN
cord-272513-umuiovrd	91	3	-	-	HYPH
cord-272513-umuiovrd	91	4	axis	axis	NN
cord-272513-umuiovrd	91	5	in	in	IN
cord-272513-umuiovrd	91	6	the	the	DT
cord-272513-umuiovrd	91	7	plots	plot	NNS
cord-272513-umuiovrd	91	8	indicates	indicate	VBZ
cord-272513-umuiovrd	91	9	the	the	DT
cord-272513-umuiovrd	91	10	variant	variant	JJ
cord-272513-umuiovrd	91	11	position	position	NN
cord-272513-umuiovrd	91	12	along	along	IN
cord-272513-umuiovrd	91	13	the	the	DT
cord-272513-umuiovrd	91	14	SARS	SARS	NNP
cord-272513-umuiovrd	91	15	-	-	HYPH
cord-272513-umuiovrd	91	16	CoV-2	CoV-2	NNP
cord-272513-umuiovrd	91	17	genome	genome	NN
cord-272513-umuiovrd	91	18	;	;	:
cord-272513-umuiovrd	91	19	the	the	DT
cord-272513-umuiovrd	91	20	left	left	JJ
cord-272513-umuiovrd	91	21	y	y	NNP
cord-272513-umuiovrd	91	22	-	-	HYPH
cord-272513-umuiovrd	91	23	axis	axis	NNP
cord-272513-umuiovrd	91	24	indicates	indicate	VBZ
cord-272513-umuiovrd	91	25	the	the	DT
cord-272513-umuiovrd	91	26	sample	sample	NN
cord-272513-umuiovrd	91	27	name	name	NN
cord-272513-umuiovrd	91	28	and	and	CC
cord-272513-umuiovrd	91	29	the	the	DT
cord-272513-umuiovrd	91	30	right	right	JJ
cord-272513-umuiovrd	91	31	y	y	NNP
cord-272513-umuiovrd	91	32	-	-	HYPH
cord-272513-umuiovrd	91	33	axis	axis	NN
cord-272513-umuiovrd	91	34	represents	represent	VBZ
cord-272513-umuiovrd	91	35	the	the	DT
cord-272513-umuiovrd	91	36	country	country	NN
cord-272513-umuiovrd	91	37	of	of	IN
cord-272513-umuiovrd	91	38	origin	origin	NN
cord-272513-umuiovrd	91	39	for	for	IN
cord-272513-umuiovrd	91	40	each	each	DT
cord-272513-umuiovrd	91	41	sample	sample	NN
cord-272513-umuiovrd	91	42	.	.	.
cord-272513-umuiovrd	92	1	This	this	DT
cord-272513-umuiovrd	92	2	plot	plot	NN
cord-272513-umuiovrd	92	3	is	be	VBZ
cord-272513-umuiovrd	92	4	used	use	VBN
cord-272513-umuiovrd	92	5	to	to	TO
cord-272513-umuiovrd	92	6	compare	compare	VB
cord-272513-umuiovrd	92	7	the	the	DT
cord-272513-umuiovrd	92	8	genome	genome	NN
cord-272513-umuiovrd	92	9	in	in	IN
cord-272513-umuiovrd	92	10	different	different	JJ
cord-272513-umuiovrd	92	11	populations	population	NNS
cord-272513-umuiovrd	92	12	.	.	.
cord-272513-umuiovrd	93	1	The	the	DT
cord-272513-umuiovrd	93	2	data	datum	NNS
cord-272513-umuiovrd	93	3	was	be	VBD
cord-272513-umuiovrd	93	4	then	then	RB
cord-272513-umuiovrd	93	5	ordered	order	VBN
cord-272513-umuiovrd	93	6	by	by	IN
cord-272513-umuiovrd	93	7	date	date	NN
cord-272513-umuiovrd	93	8	of	of	IN
cord-272513-umuiovrd	93	9	first	first	JJ
cord-272513-umuiovrd	93	10	reported	report	VBN
cord-272513-umuiovrd	93	11	case	case	NN
cord-272513-umuiovrd	93	12	,	,	,
cord-272513-umuiovrd	93	13	meaning	mean	VBG
cord-272513-umuiovrd	93	14	that	that	IN
cord-272513-umuiovrd	93	15	Wuhan	Wuhan	NNP
cord-272513-umuiovrd	93	16	is	be	VBZ
cord-272513-umuiovrd	93	17	followed	follow	VBN
cord-272513-umuiovrd	93	18	by	by	IN
cord-272513-umuiovrd	93	19	United	United	NNP
cord-272513-umuiovrd	93	20	Arab	Arab	NNP
cord-272513-umuiovrd	93	21	Emirates	Emirates	NNPS
cord-272513-umuiovrd	93	22	and	and	CC
cord-272513-umuiovrd	93	23	the	the	DT
cord-272513-umuiovrd	93	24	final	final	JJ
cord-272513-umuiovrd	93	25	country	country	NN
cord-272513-umuiovrd	93	26	is	be	VBZ
cord-272513-umuiovrd	93	27	Cyprus	Cyprus	NNP
cord-272513-umuiovrd	93	28	.	.	.
cord-272513-umuiovrd	94	1	Phylogenetic	phylogenetic	JJ
cord-272513-umuiovrd	94	2	analysis	analysis	NN
cord-272513-umuiovrd	95	1	:	:	:
cord-272513-umuiovrd	95	2	Phylogenetic	phylogenetic	JJ
cord-272513-umuiovrd	95	3	analysis	analysis	NN
cord-272513-umuiovrd	95	4	was	be	VBD
cord-272513-umuiovrd	95	5	performed	perform	VBN
cord-272513-umuiovrd	95	6	using	use	VBG
cord-272513-umuiovrd	95	7	BEAST	BEAST	NNP
cord-272513-umuiovrd	95	8	(	(	-LRB-
cord-272513-umuiovrd	95	9	Bayesian	Bayesian	NNP
cord-272513-umuiovrd	95	10	Evolutionary	Evolutionary	NNP
cord-272513-umuiovrd	95	11	Analysis	Analysis	NNP
cord-272513-umuiovrd	95	12	Sample	Sample	NNP
cord-272513-umuiovrd	95	13	Trees	tree	NNS
cord-272513-umuiovrd	95	14	)	)	-RRB-
cord-272513-umuiovrd	96	1	v1.10.4	v1.10.4	NNP
cord-272513-umuiovrd	96	2	,	,	,
cord-272513-umuiovrd	96	3	to	to	TO
cord-272513-umuiovrd	96	4	perform	perform	VB
cord-272513-umuiovrd	96	5	Bayesian	bayesian	JJ
cord-272513-umuiovrd	96	6	analysis	analysis	NN
cord-272513-umuiovrd	96	7	of	of	IN
cord-272513-umuiovrd	96	8	molecular	molecular	JJ
cord-272513-umuiovrd	96	9	sequences	sequence	NNS
cord-272513-umuiovrd	96	10	using	use	VBG
cord-272513-umuiovrd	96	11	Monte	Monte	NNP
cord-272513-umuiovrd	96	12	Carlo	Carlo	NNP
cord-272513-umuiovrd	96	13	Markov	Markov	NNP
cord-272513-umuiovrd	96	14	Chains	Chains	NNP
cord-272513-umuiovrd	96	15	(	(	-LRB-
cord-272513-umuiovrd	96	16	MCMC	MCMC	NNP
cord-272513-umuiovrd	96	17	)	)	-RRB-
cord-272513-umuiovrd	96	18	15	15	CD
cord-272513-umuiovrd	96	19	.	.	.
cord-272513-umuiovrd	97	1	The	the	DT
cord-272513-umuiovrd	97	2	analysis	analysis	NN
cord-272513-umuiovrd	97	3	followed	follow	VBD
cord-272513-umuiovrd	97	4	the	the	DT
cord-272513-umuiovrd	97	5	approach	approach	NN
cord-272513-umuiovrd	97	6	recommended	recommend	VBN
cord-272513-umuiovrd	97	7	to	to	TO
cord-272513-umuiovrd	97	8	reconstruct	reconstruct	VB
cord-272513-umuiovrd	97	9	the	the	DT
cord-272513-umuiovrd	97	10	evolutionary	evolutionary	JJ
cord-272513-umuiovrd	97	11	dynamics	dynamic	NNS
cord-272513-umuiovrd	97	12	of	of	IN
cord-272513-umuiovrd	97	13	an	an	DT
cord-272513-umuiovrd	97	14	epidemic	epidemic	NN
cord-272513-umuiovrd	97	15	.	.	.
cord-272513-umuiovrd	98	1	The	the	DT
cord-272513-umuiovrd	98	2	aim	aim	NN
cord-272513-umuiovrd	98	3	of	of	IN
cord-272513-umuiovrd	98	4	this	this	DT
cord-272513-umuiovrd	98	5	is	be	VBZ
cord-272513-umuiovrd	98	6	to	to	TO
cord-272513-umuiovrd	98	7	obtain	obtain	VB
cord-272513-umuiovrd	98	8	an	an	DT
cord-272513-umuiovrd	98	9	estimate	estimate	NN
cord-272513-umuiovrd	98	10	of	of	IN
cord-272513-umuiovrd	98	11	the	the	DT
cord-272513-umuiovrd	98	12	origin	origin	NN
cord-272513-umuiovrd	98	13	of	of	IN
cord-272513-umuiovrd	98	14	the	the	DT
cord-272513-umuiovrd	98	15	epidemic	epidemic	NN
cord-272513-umuiovrd	98	16	in	in	IN
cord-272513-umuiovrd	98	17	the	the	DT
cord-272513-umuiovrd	98	18	region	region	NN
cord-272513-umuiovrd	98	19	and	and	CC
cord-272513-umuiovrd	98	20	understand	understand	VB
cord-272513-umuiovrd	98	21	how	how	WRB
cord-272513-umuiovrd	98	22	it	-PRON-	PRP
cord-272513-umuiovrd	98	23	spread	spread	VBD
cord-272513-umuiovrd	98	24	through	through	IN
cord-272513-umuiovrd	98	25	the	the	DT
cord-272513-umuiovrd	98	26	Middle	Middle	NNP
cord-272513-umuiovrd	98	27	East	East	NNP
cord-272513-umuiovrd	98	28	.	.	.
cord-272513-umuiovrd	99	1	To	to	TO
cord-272513-umuiovrd	99	2	undertake	undertake	VB
cord-272513-umuiovrd	99	3	the	the	DT
cord-272513-umuiovrd	99	4	analysis	analysis	NN
cord-272513-umuiovrd	99	5	,	,	,
cord-272513-umuiovrd	99	6	we	-PRON-	PRP
cord-272513-umuiovrd	99	7	opened	open	VBD
cord-272513-umuiovrd	99	8	BEAUTi	BEAUTi	NNP
cord-272513-umuiovrd	99	9	,	,	,
cord-272513-umuiovrd	99	10	the	the	DT
cord-272513-umuiovrd	99	11	graphical	graphical	JJ
cord-272513-umuiovrd	99	12	application	application	NN
cord-272513-umuiovrd	99	13	used	use	VBN
cord-272513-umuiovrd	99	14	to	to	TO
cord-272513-umuiovrd	99	15	analyse	analyse	VB
cord-272513-umuiovrd	99	16	the	the	DT
cord-272513-umuiovrd	99	17	control	control	NN
cord-272513-umuiovrd	99	18	file	file	NN
cord-272513-umuiovrd	99	19	.	.	.
cord-272513-umuiovrd	100	1	Although	although	IN
cord-272513-umuiovrd	100	2	it	-PRON-	PRP
cord-272513-umuiovrd	100	3	requests	request	VBZ
cord-272513-umuiovrd	100	4	a	a	DT
cord-272513-umuiovrd	100	5	NEXUS	NEXUS	NNP
cord-272513-umuiovrd	100	6	file	file	NN
cord-272513-umuiovrd	100	7	,	,	,
cord-272513-umuiovrd	100	8	the	the	DT
cord-272513-umuiovrd	100	9	FASTA	FASTA	NNP
cord-272513-umuiovrd	100	10	file	file	NN
cord-272513-umuiovrd	100	11	can	can	MD
cord-272513-umuiovrd	100	12	also	also	RB
cord-272513-umuiovrd	100	13	be	be	VB
cord-272513-umuiovrd	100	14	used	use	VBN
cord-272513-umuiovrd	100	15	.	.	.
cord-272513-umuiovrd	101	1	The	the	DT
cord-272513-umuiovrd	101	2	data	datum	NNS
cord-272513-umuiovrd	101	3	was	be	VBD
cord-272513-umuiovrd	101	4	uploaded	upload	VBN
cord-272513-umuiovrd	101	5	using	use	VBG
cord-272513-umuiovrd	101	6	the	the	DT
cord-272513-umuiovrd	101	7	Import	Import	NNP
cord-272513-umuiovrd	101	8	Data	Data	NNP
cord-272513-umuiovrd	101	9	option	option	NN
cord-272513-umuiovrd	101	10	and	and	CC
cord-272513-umuiovrd	101	11	appeared	appear	VBD
cord-272513-umuiovrd	101	12	under	under	IN
cord-272513-umuiovrd	101	13	the	the	DT
cord-272513-umuiovrd	101	14	Partitions	partition	NNS
cord-272513-umuiovrd	101	15	section	section	NN
cord-272513-umuiovrd	101	16	.	.	.
cord-272513-umuiovrd	102	1	BEAUTi	BEAUTi	NNS
cord-272513-umuiovrd	102	2	confirmed	confirm	VBD
cord-272513-umuiovrd	102	3	that	that	IN
cord-272513-umuiovrd	102	4	30851	30851	CD
cord-272513-umuiovrd	102	5	sites	site	NNS
cord-272513-umuiovrd	102	6	are	be	VBP
cord-272513-umuiovrd	102	7	present	present	JJ
cord-272513-umuiovrd	102	8	in	in	IN
cord-272513-umuiovrd	102	9	the	the	DT
cord-272513-umuiovrd	102	10	uploaded	upload	VBN
cord-272513-umuiovrd	102	11	data	datum	NNS
cord-272513-umuiovrd	102	12	.	.	.
cord-272513-umuiovrd	103	1	The	the	DT
cord-272513-umuiovrd	103	2	default	default	NN
cord-272513-umuiovrd	103	3	options	option	NNS
cord-272513-umuiovrd	103	4	are	be	VBP
cord-272513-umuiovrd	103	5	selected	select	VBN
cord-272513-umuiovrd	103	6	for	for	IN
cord-272513-umuiovrd	103	7	site	site	NN
cord-272513-umuiovrd	103	8	model	model	NN
cord-272513-umuiovrd	103	9	and	and	CC
cord-272513-umuiovrd	103	10	clock	clock	NN
cord-272513-umuiovrd	103	11	model	model	NN
cord-272513-umuiovrd	103	12	.	.	.
cord-272513-umuiovrd	104	1	Next	next	RB
cord-272513-umuiovrd	104	2	,	,	,
cord-272513-umuiovrd	104	3	we	-PRON-	PRP
cord-272513-umuiovrd	104	4	specified	specify	VBD
cord-272513-umuiovrd	104	5	the	the	DT
cord-272513-umuiovrd	104	6	individual	individual	JJ
cord-272513-umuiovrd	104	7	virus	virus	NN
cord-272513-umuiovrd	104	8	dates	date	NNS
cord-272513-umuiovrd	104	9	by	by	IN
cord-272513-umuiovrd	104	10	selecting	select	VBG
cord-272513-umuiovrd	104	11	the	the	DT
cord-272513-umuiovrd	104	12	"	"	``
cord-272513-umuiovrd	104	13	Tips	tip	NNS
cord-272513-umuiovrd	104	14	"	"	''
cord-272513-umuiovrd	104	15	panel	panel	NN
cord-272513-umuiovrd	104	16	and	and	CC
cord-272513-umuiovrd	104	17	selecting	select	VBG
cord-272513-umuiovrd	104	18	the	the	DT
cord-272513-umuiovrd	104	19	"	"	``
cord-272513-umuiovrd	104	20	Use	use	VB
cord-272513-umuiovrd	104	21	tip	tip	NN
cord-272513-umuiovrd	104	22	dates	date	NNS
cord-272513-umuiovrd	104	23	"	"	''
cord-272513-umuiovrd	104	24	option	option	NN
cord-272513-umuiovrd	104	25	.	.	.
cord-272513-umuiovrd	105	1	A	a	DT
cord-272513-umuiovrd	105	2	tab	tab	NN
cord-272513-umuiovrd	105	3	delimited	delimited	JJ
cord-272513-umuiovrd	105	4	file	file	NN
cord-272513-umuiovrd	105	5	was	be	VBD
cord-272513-umuiovrd	105	6	uploaded	upload	VBN
cord-272513-umuiovrd	105	7	which	which	WDT
cord-272513-umuiovrd	105	8	specified	specify	VBD
cord-272513-umuiovrd	105	9	the	the	DT
cord-272513-umuiovrd	105	10	upload	upload	NN
cord-272513-umuiovrd	105	11	date	date	NN
cord-272513-umuiovrd	105	12	.	.	.
cord-272513-umuiovrd	106	1	This	this	DT
cord-272513-umuiovrd	106	2	information	information	NN
cord-272513-umuiovrd	106	3	was	be	VBD
cord-272513-umuiovrd	106	4	extracted	extract	VBN
cord-272513-umuiovrd	106	5	from	from	IN
cord-272513-umuiovrd	106	6	the	the	DT
cord-272513-umuiovrd	106	7	names	name	NNS
cord-272513-umuiovrd	106	8	as	as	IN
cord-272513-umuiovrd	106	9	they	-PRON-	PRP
cord-272513-umuiovrd	106	10	were	be	VBD
cord-272513-umuiovrd	106	11	downloaded	download	VBN
cord-272513-umuiovrd	106	12	from	from	IN
cord-272513-umuiovrd	106	13	GISAID	GISAID	NNP
cord-272513-umuiovrd	106	14	.	.	.
cord-272513-umuiovrd	107	1	Next	next	RB
cord-272513-umuiovrd	107	2	,	,	,
cord-272513-umuiovrd	107	3	we	-PRON-	PRP
cord-272513-umuiovrd	107	4	set	set	VBD
cord-272513-umuiovrd	107	5	the	the	DT
cord-272513-umuiovrd	107	6	substitution	substitution	NN
cord-272513-umuiovrd	107	7	model	model	NN
cord-272513-umuiovrd	107	8	by	by	IN
cord-272513-umuiovrd	107	9	selecting	select	VBG
cord-272513-umuiovrd	107	10	the	the	DT
cord-272513-umuiovrd	107	11	"	"	``
cord-272513-umuiovrd	107	12	Sites	site	NNS
cord-272513-umuiovrd	107	13	"	"	''
cord-272513-umuiovrd	107	14	tab	tab	NN
cord-272513-umuiovrd	107	15	and	and	CC
cord-272513-umuiovrd	107	16	selected	select	VBD
cord-272513-umuiovrd	107	17	the	the	DT
cord-272513-umuiovrd	107	18	default	default	NN
cord-272513-umuiovrd	107	19	options	option	NNS
cord-272513-umuiovrd	107	20	of	of	IN
cord-272513-umuiovrd	107	21	HKY	HKY	NNP
cord-272513-umuiovrd	107	22	model	model	NN
cord-272513-umuiovrd	107	23	,	,	,
cord-272513-umuiovrd	107	24	the	the	DT
cord-272513-umuiovrd	107	25	default	default	NN
cord-272513-umuiovrd	107	26	Estimated	estimate	VBN
cord-272513-umuiovrd	107	27	base	base	NN
cord-272513-umuiovrd	107	28	frequencies	frequency	NNS
cord-272513-umuiovrd	107	29	and	and	CC
cord-272513-umuiovrd	107	30	select	select	VB
cord-272513-umuiovrd	107	31	Gamma	Gamma	NNP
cord-272513-umuiovrd	107	32	as	as	IN
cord-272513-umuiovrd	107	33	Site	Site	NNP
cord-272513-umuiovrd	107	34	Heterogeneity	Heterogeneity	NNP
cord-272513-umuiovrd	107	35	Model	Model	NNP
cord-272513-umuiovrd	107	36	.	.	.
cord-272513-umuiovrd	108	1	Next	next	RB
cord-272513-umuiovrd	108	2	,	,	,
cord-272513-umuiovrd	108	3	the	the	DT
cord-272513-umuiovrd	108	4	molecular	molecular	JJ
cord-272513-umuiovrd	108	5	clock	clock	NN
cord-272513-umuiovrd	108	6	was	be	VBD
cord-272513-umuiovrd	108	7	selected	select	VBN
cord-272513-umuiovrd	108	8	under	under	IN
cord-272513-umuiovrd	108	9	the	the	DT
cord-272513-umuiovrd	108	10	"	"	``
cord-272513-umuiovrd	108	11	Clock	Clock	NNP
cord-272513-umuiovrd	108	12	"	"	''
cord-272513-umuiovrd	108	13	tab	tab	NN
cord-272513-umuiovrd	108	14	as	as	IN
cord-272513-umuiovrd	108	15	a	a	DT
cord-272513-umuiovrd	108	16	strict	strict	JJ
cord-272513-umuiovrd	108	17	clock	clock	NN
cord-272513-umuiovrd	108	18	since	since	IN
cord-272513-umuiovrd	108	19	we	-PRON-	PRP
cord-272513-umuiovrd	108	20	know	know	VBP
cord-272513-umuiovrd	108	21	that	that	IN
cord-272513-umuiovrd	108	22	the	the	DT
cord-272513-umuiovrd	108	23	frequency	frequency	NN
cord-272513-umuiovrd	108	24	of	of	IN
cord-272513-umuiovrd	108	25	mutation	mutation	NN
cord-272513-umuiovrd	108	26	is	be	VBZ
cord-272513-umuiovrd	108	27	low	low	JJ
cord-272513-umuiovrd	108	28	.	.	.
cord-272513-umuiovrd	109	1	The	the	DT
cord-272513-umuiovrd	109	2	tree	tree	NN
cord-272513-umuiovrd	109	3	options	option	NNS
cord-272513-umuiovrd	109	4	are	be	VBP
cord-272513-umuiovrd	109	5	elected	elect	VBN
cord-272513-umuiovrd	109	6	under	under	IN
cord-272513-umuiovrd	109	7	the	the	DT
cord-272513-umuiovrd	109	8	"	"	``
cord-272513-umuiovrd	109	9	Tree	tree	NN
cord-272513-umuiovrd	109	10	Prior	prior	RB
cord-272513-umuiovrd	109	11	"	"	''
cord-272513-umuiovrd	109	12	tab	tab	NN
cord-272513-umuiovrd	109	13	as	as	IN
cord-272513-umuiovrd	109	14	"	"	``
cord-272513-umuiovrd	109	15	Random	random	JJ
cord-272513-umuiovrd	109	16	starting	start	VBG
cord-272513-umuiovrd	109	17	tree	tree	NN
cord-272513-umuiovrd	109	18	"	"	''
cord-272513-umuiovrd	109	19	for	for	IN
cord-272513-umuiovrd	109	20	the	the	DT
cord-272513-umuiovrd	109	21	tree	tree	NN
cord-272513-umuiovrd	109	22	model	model	NN
cord-272513-umuiovrd	109	23	and	and	CC
cord-272513-umuiovrd	109	24	"	"	``
cord-272513-umuiovrd	109	25	Coalescent	Coalescent	NNP
cord-272513-umuiovrd	109	26	:	:	:
cord-272513-umuiovrd	109	27	Exponential	Exponential	NNP
cord-272513-umuiovrd	109	28	Growth	Growth	NNP
cord-272513-umuiovrd	109	29	"	"	''
cord-272513-umuiovrd	109	30	,	,	,
cord-272513-umuiovrd	109	31	a	a	DT
cord-272513-umuiovrd	109	32	model	model	NN
cord-272513-umuiovrd	109	33	that	that	WDT
cord-272513-umuiovrd	109	34	assumes	assume	VBZ
cord-272513-umuiovrd	109	35	a	a	DT
cord-272513-umuiovrd	109	36	finite	finite	JJ
cord-272513-umuiovrd	109	37	but	but	CC
cord-272513-umuiovrd	109	38	constant	constant	JJ
cord-272513-umuiovrd	109	39	population	population	NN
cord-272513-umuiovrd	109	40	size	size	NN
cord-272513-umuiovrd	109	41	and	and	CC
cord-272513-umuiovrd	109	42	predicts	predict	VBZ
cord-272513-umuiovrd	109	43	that	that	IN
cord-272513-umuiovrd	109	44	all	all	DT
cord-272513-umuiovrd	109	45	alleles	allele	NNS
cord-272513-umuiovrd	109	46	will	will	MD
cord-272513-umuiovrd	109	47	be	be	VB
cord-272513-umuiovrd	109	48	removed	remove	VBN
cord-272513-umuiovrd	109	49	from	from	IN
cord-272513-umuiovrd	109	50	the	the	DT
cord-272513-umuiovrd	109	51	population	population	NN
cord-272513-umuiovrd	109	52	individually	individually	RB
cord-272513-umuiovrd	109	53	.	.	.
cord-272513-umuiovrd	110	1	This	this	DT
cord-272513-umuiovrd	110	2	provides	provide	VBZ
cord-272513-umuiovrd	110	3	additional	additional	JJ
cord-272513-umuiovrd	110	4	predictions	prediction	NNS
cord-272513-umuiovrd	110	5	on	on	IN
cord-272513-umuiovrd	110	6	the	the	DT
cord-272513-umuiovrd	110	7	reproductive	reproductive	JJ
cord-272513-umuiovrd	110	8	rate	rate	NN
cord-272513-umuiovrd	110	9	.	.	.
cord-272513-umuiovrd	111	1	In	in	IN
cord-272513-umuiovrd	111	2	the	the	DT
cord-272513-umuiovrd	111	3	"	"	``
cord-272513-umuiovrd	111	4	Priors	Priors	NNP
cord-272513-umuiovrd	111	5	"	"	''
cord-272513-umuiovrd	111	6	tab	tab	NN
cord-272513-umuiovrd	111	7	,	,	,
cord-272513-umuiovrd	111	8	select	select	VB
cord-272513-umuiovrd	111	9	the	the	DT
cord-272513-umuiovrd	111	10	scale	scale	NN
cord-272513-umuiovrd	111	11	as	as	IN
cord-272513-umuiovrd	111	12	100	100	CD
cord-272513-umuiovrd	111	13	for	for	IN
cord-272513-umuiovrd	111	14	prior	prior	JJ
cord-272513-umuiovrd	111	15	distribution	distribution	NN
cord-272513-umuiovrd	111	16	which	which	WDT
cord-272513-umuiovrd	111	17	models	model	VBZ
cord-272513-umuiovrd	111	18	the	the	DT
cord-272513-umuiovrd	111	19	expected	expect	VBN
cord-272513-umuiovrd	111	20	growth	growth	NN
cord-272513-umuiovrd	111	21	for	for	IN
cord-272513-umuiovrd	111	22	a	a	DT
cord-272513-umuiovrd	111	23	pandemic	pandemic	NN
cord-272513-umuiovrd	111	24	.	.	.
cord-272513-umuiovrd	112	1	The	the	DT
cord-272513-umuiovrd	112	2	operators	operator	NNS
cord-272513-umuiovrd	112	3	require	require	VBP
cord-272513-umuiovrd	112	4	no	no	DT
cord-272513-umuiovrd	112	5	changes	change	NNS
cord-272513-umuiovrd	112	6	from	from	IN
cord-272513-umuiovrd	112	7	the	the	DT
cord-272513-umuiovrd	112	8	default	default	NN
cord-272513-umuiovrd	112	9	.	.	.
cord-272513-umuiovrd	113	1	The	the	DT
cord-272513-umuiovrd	113	2	MCMC	MCMC	NNP
cord-272513-umuiovrd	113	3	option	option	NN
cord-272513-umuiovrd	113	4	for	for	IN
cord-272513-umuiovrd	113	5	chain	chain	NN
cord-272513-umuiovrd	113	6	length	length	NN
cord-272513-umuiovrd	113	7	is	be	VBZ
cord-272513-umuiovrd	113	8	set	set	VBN
cord-272513-umuiovrd	113	9	as	as	IN
cord-272513-umuiovrd	113	10	100,000	100,000	CD
cord-272513-umuiovrd	113	11	and	and	CC
cord-272513-umuiovrd	113	12	sampling	sampling	NN
cord-272513-umuiovrd	113	13	frequency	frequency	NN
cord-272513-umuiovrd	113	14	to	to	IN
cord-272513-umuiovrd	113	15	100	100	CD
cord-272513-umuiovrd	113	16	.	.	.
cord-272513-umuiovrd	114	1	Tree	tree	NN
cord-272513-umuiovrd	114	2	visualisation	visualisation	NN
cord-272513-umuiovrd	114	3	:	:	:
cord-272513-umuiovrd	114	4	Finally	finally	RB
cord-272513-umuiovrd	114	5	,	,	,
cord-272513-umuiovrd	114	6	we	-PRON-	PRP
cord-272513-umuiovrd	114	7	summarised	summarise	VBD
cord-272513-umuiovrd	114	8	the	the	DT
cord-272513-umuiovrd	114	9	tree	tree	NN
cord-272513-umuiovrd	114	10	using	use	VBG
cord-272513-umuiovrd	114	11	the	the	DT
cord-272513-umuiovrd	114	12	TreeAnnotator	TreeAnnotator	NNP
cord-272513-umuiovrd	114	13	tool	tool	NN
cord-272513-umuiovrd	114	14	,	,	,
cord-272513-umuiovrd	114	15	an	an	DT
cord-272513-umuiovrd	114	16	additional	additional	JJ
cord-272513-umuiovrd	114	17	package	package	NN
cord-272513-umuiovrd	114	18	as	as	IN
cord-272513-umuiovrd	114	19	part	part	NN
cord-272513-umuiovrd	114	20	of	of	IN
cord-272513-umuiovrd	114	21	BEAST	BEAST	NNP
cord-272513-umuiovrd	114	22	.	.	.
cord-272513-umuiovrd	115	1	We	-PRON-	PRP
cord-272513-umuiovrd	115	2	first	first	RB
cord-272513-umuiovrd	115	3	select	select	VBP
cord-272513-umuiovrd	115	4	the	the	DT
cord-272513-umuiovrd	115	5	file	file	NN
cord-272513-umuiovrd	115	6	generated	generate	VBN
cord-272513-umuiovrd	115	7	using	use	VBG
cord-272513-umuiovrd	115	8	BEAST	BEAST	NNP
cord-272513-umuiovrd	115	9	and	and	CC
cord-272513-umuiovrd	115	10	outputted	output	VBD
cord-272513-umuiovrd	115	11	the	the	DT
cord-272513-umuiovrd	115	12	tree	tree	NN
cord-272513-umuiovrd	115	13	file	file	NN
cord-272513-umuiovrd	115	14	.	.	.
cord-272513-umuiovrd	116	1	Then	then	RB
cord-272513-umuiovrd	116	2	the	the	DT
cord-272513-umuiovrd	116	3	output	output	NN
cord-272513-umuiovrd	116	4	NEXUS	NEXUS	NNP
cord-272513-umuiovrd	116	5	file	file	NN
cord-272513-umuiovrd	116	6	was	be	VBD
cord-272513-umuiovrd	116	7	imported	import	VBN
cord-272513-umuiovrd	116	8	to	to	IN
cord-272513-umuiovrd	116	9	FigTree	FigTree	NNP
cord-272513-umuiovrd	116	10	program	program	NN
cord-272513-umuiovrd	116	11	to	to	TO
cord-272513-umuiovrd	116	12	display	display	VB
cord-272513-umuiovrd	116	13	.	.	.
cord-272513-umuiovrd	117	1	Once	once	IN
cord-272513-umuiovrd	117	2	we	-PRON-	PRP
cord-272513-umuiovrd	117	3	opened	open	VBD
cord-272513-umuiovrd	117	4	FigTree	FigTree	NNP
cord-272513-umuiovrd	117	5	to	to	TO
cord-272513-umuiovrd	117	6	display	display	VB
cord-272513-umuiovrd	117	7	,	,	,
cord-272513-umuiovrd	117	8	we	-PRON-	PRP
cord-272513-umuiovrd	117	9	re	re	VBP
cord-272513-umuiovrd	117	10	-	-	VBD
cord-272513-umuiovrd	117	11	ordered	order	VBD
cord-272513-umuiovrd	117	12	the	the	DT
cord-272513-umuiovrd	117	13	order	order	NN
cord-272513-umuiovrd	117	14	by	by	IN
cord-272513-umuiovrd	117	15	increasing	increase	VBG
cord-272513-umuiovrd	117	16	value	value	NN
cord-272513-umuiovrd	117	17	and	and	CC
cord-272513-umuiovrd	117	18	then	then	RB
cord-272513-umuiovrd	117	19	switched	switch	VBD
cord-272513-umuiovrd	117	20	on	on	IN
cord-272513-umuiovrd	117	21	Branch	Branch	NNP
cord-272513-umuiovrd	117	22	Labels	Labels	NNP
cord-272513-umuiovrd	117	23	.	.	.
cord-272513-umuiovrd	118	1	We	-PRON-	PRP
cord-272513-umuiovrd	118	2	switched	switch	VBD
cord-272513-umuiovrd	118	3	on	on	IN
cord-272513-umuiovrd	118	4	Node	Node	NNP
cord-272513-umuiovrd	118	5	Bars	Bars	NNPS
cord-272513-umuiovrd	118	6	and	and	CC
cord-272513-umuiovrd	118	7	selected	select	VBD
cord-272513-umuiovrd	118	8	the	the	DT
cord-272513-umuiovrd	118	9	95	95	CD
cord-272513-umuiovrd	118	10	%	%	NN
cord-272513-umuiovrd	118	11	highest	high	JJS
cord-272513-umuiovrd	118	12	posterior	posterior	JJ
cord-272513-umuiovrd	118	13	density	density	NN
cord-272513-umuiovrd	118	14	(	(	-LRB-
cord-272513-umuiovrd	118	15	HPD	HPD	NNP
cord-272513-umuiovrd	118	16	)	)	-RRB-
cord-272513-umuiovrd	118	17	credible	credible	JJ
cord-272513-umuiovrd	118	18	intervals	interval	NNS
cord-272513-umuiovrd	118	19	for	for	IN
cord-272513-umuiovrd	118	20	the	the	DT
cord-272513-umuiovrd	118	21	node	node	NN
cord-272513-umuiovrd	118	22	heights	height	NNS
cord-272513-umuiovrd	118	23	.	.	.
cord-272513-umuiovrd	119	1	We	-PRON-	PRP
cord-272513-umuiovrd	119	2	plotted	plot	VBD
cord-272513-umuiovrd	119	3	a	a	DT
cord-272513-umuiovrd	119	4	time	time	NN
cord-272513-umuiovrd	119	5	scale	scale	NN
cord-272513-umuiovrd	119	6	by	by	IN
cord-272513-umuiovrd	119	7	turning	turn	VBG
cord-272513-umuiovrd	119	8	on	on	RP
cord-272513-umuiovrd	119	9	the	the	DT
cord-272513-umuiovrd	119	10	Scale	Scale	NNP
cord-272513-umuiovrd	119	11	Axis	Axis	NNP
cord-272513-umuiovrd	119	12	and	and	CC
cord-272513-umuiovrd	119	13	then	then	RB
cord-272513-umuiovrd	119	14	setting	set	VBG
cord-272513-umuiovrd	119	15	the	the	DT
cord-272513-umuiovrd	119	16	Time	Time	NNP
cord-272513-umuiovrd	119	17	Scale	Scale	NNP
cord-272513-umuiovrd	119	18	section	section	NN
cord-272513-umuiovrd	119	19	for	for	IN
cord-272513-umuiovrd	119	20	Offset	Offset	NNP
cord-272513-umuiovrd	119	21	as	as	IN
cord-272513-umuiovrd	119	22	2020.7	2020.7	CD
cord-272513-umuiovrd	119	23	,	,	,
cord-272513-umuiovrd	119	24	the	the	DT
cord-272513-umuiovrd	119	25	latest	late	JJS
cord-272513-umuiovrd	119	26	date	date	NN
cord-272513-umuiovrd	119	27	of	of	IN
cord-272513-umuiovrd	119	28	collection	collection	NN
cord-272513-umuiovrd	119	29	for	for	IN
cord-272513-umuiovrd	119	30	our	-PRON-	PRP$
cord-272513-umuiovrd	119	31	samples	sample	NNS
cord-272513-umuiovrd	119	32	.	.	.
cord-272513-umuiovrd	120	1	Sequence	sequence	NN
cord-272513-umuiovrd	120	2	alignment	alignment	NN
cord-272513-umuiovrd	120	3	and	and	CC
cord-272513-umuiovrd	120	4	variant	variant	NN
cord-272513-umuiovrd	120	5	calling	calling	NN
cord-272513-umuiovrd	120	6	were	be	VBD
cord-272513-umuiovrd	120	7	completed	complete	VBN
cord-272513-umuiovrd	120	8	successfully	successfully	RB
cord-272513-umuiovrd	120	9	.	.	.
cord-272513-umuiovrd	121	1	Once	once	IN
cord-272513-umuiovrd	121	2	these	these	DT
cord-272513-umuiovrd	121	3	were	be	VBD
cord-272513-umuiovrd	121	4	complete	complete	JJ
cord-272513-umuiovrd	121	5	,	,	,
cord-272513-umuiovrd	121	6	variation	variation	NN
cord-272513-umuiovrd	121	7	annotation	annotation	NN
cord-272513-umuiovrd	121	8	was	be	VBD
cord-272513-umuiovrd	121	9	performed	perform	VBN
cord-272513-umuiovrd	121	10	.	.	.
cord-272513-umuiovrd	122	1	We	-PRON-	PRP
cord-272513-umuiovrd	122	2	identified	identify	VBD
cord-272513-umuiovrd	122	3	2200	2200	CD
cord-272513-umuiovrd	122	4	distinct	distinct	JJ
cord-272513-umuiovrd	122	5	genome	genome	NN
cord-272513-umuiovrd	122	6	variants	variant	NNS
cord-272513-umuiovrd	122	7	which	which	WDT
cord-272513-umuiovrd	122	8	are	be	VBP
cord-272513-umuiovrd	122	9	recorded	record	VBN
cord-272513-umuiovrd	122	10	in	in	IN
cord-272513-umuiovrd	122	11	Table	Table	NNP
cord-272513-umuiovrd	122	12	1	1	CD
cord-272513-umuiovrd	122	13	.	.	.
cord-272513-umuiovrd	123	1	The	the	DT
cord-272513-umuiovrd	123	2	most	most	RBS
cord-272513-umuiovrd	123	3	common	common	JJ
cord-272513-umuiovrd	123	4	,	,	,
cord-272513-umuiovrd	123	5	high	high	JJ
cord-272513-umuiovrd	123	6	impact	impact	NN
cord-272513-umuiovrd	123	7	variants	variant	NNS
cord-272513-umuiovrd	123	8	were	be	VBD
cord-272513-umuiovrd	123	9	10818delTinsG	10818deltinsg	CD
cord-272513-umuiovrd	123	10	,	,	,
cord-272513-umuiovrd	123	11	2772delCinsC	2772delcinsc	CD
cord-272513-umuiovrd	123	12	,	,	,
cord-272513-umuiovrd	123	13	14159delCinsC	14159delcinsc	CD
cord-272513-umuiovrd	123	14	and	and	CC
cord-272513-umuiovrd	123	15	2789delAinsA.	2789delainsa.	CD
cord-272513-umuiovrd	124	1	The	the	DT
cord-272513-umuiovrd	124	2	frequency	frequency	NN
cord-272513-umuiovrd	124	3	of	of	IN
cord-272513-umuiovrd	124	4	each	each	DT
cord-272513-umuiovrd	124	5	unique	unique	JJ
cord-272513-umuiovrd	124	6	variant	variant	NN
cord-272513-umuiovrd	124	7	type	type	NN
cord-272513-umuiovrd	124	8	can	can	MD
cord-272513-umuiovrd	124	9	be	be	VB
cord-272513-umuiovrd	124	10	found	find	VBN
cord-272513-umuiovrd	124	11	in	in	IN
cord-272513-umuiovrd	124	12	Table	Table	NNP
cord-272513-umuiovrd	124	13	 	 	_SP
cord-272513-umuiovrd	124	14	2	2	CD
cord-272513-umuiovrd	124	15	,	,	,
cord-272513-umuiovrd	124	16	which	which	WDT
cord-272513-umuiovrd	124	17	outlines	outline	VBZ
cord-272513-umuiovrd	124	18	the	the	DT
cord-272513-umuiovrd	124	19	locus	locus	NN
cord-272513-umuiovrd	124	20	of	of	IN
cord-272513-umuiovrd	124	21	all	all	DT
cord-272513-umuiovrd	124	22	SNPs	snp	NNS
cord-272513-umuiovrd	124	23	with	with	IN
cord-272513-umuiovrd	124	24	over	over	IN
cord-272513-umuiovrd	124	25	50	50	CD
cord-272513-umuiovrd	124	26	instances	instance	NNS
cord-272513-umuiovrd	124	27	.	.	.
cord-272513-umuiovrd	125	1	Frame	frame	NN
cord-272513-umuiovrd	125	2	shift	shift	NN
cord-272513-umuiovrd	125	3	variants	variant	NNS
cord-272513-umuiovrd	126	1	298	298	CD
cord-272513-umuiovrd	126	2	Start	start	VB
cord-272513-umuiovrd	126	3	lost	lose	VBD
cord-272513-umuiovrd	126	4	1	1	CD
cord-272513-umuiovrd	126	5	Stop	stop	NN
cord-272513-umuiovrd	126	6	lost	lose	VBN
cord-272513-umuiovrd	126	7	1	1	CD
cord-272513-umuiovrd	126	8	Upstream	Upstream	NNP
cord-272513-umuiovrd	126	9	gene	gene	NN
cord-272513-umuiovrd	126	10	variant	variant	NN
cord-272513-umuiovrd	126	11	720	720	CD
cord-272513-umuiovrd	127	1	These	these	DT
cord-272513-umuiovrd	127	2	results	result	NNS
cord-272513-umuiovrd	127	3	were	be	VBD
cord-272513-umuiovrd	127	4	then	then	RB
cord-272513-umuiovrd	127	5	used	use	VBN
cord-272513-umuiovrd	127	6	to	to	TO
cord-272513-umuiovrd	127	7	generate	generate	VB
cord-272513-umuiovrd	127	8	the	the	DT
cord-272513-umuiovrd	127	9	dotplot	dotplot	NN
cord-272513-umuiovrd	127	10	of	of	IN
cord-272513-umuiovrd	127	11	variant	variant	JJ
cord-272513-umuiovrd	127	12	alignment	alignment	NN
cord-272513-umuiovrd	127	13	(	(	-LRB-
cord-272513-umuiovrd	127	14	Figure	figure	NN
cord-272513-umuiovrd	127	15	1	1	CD
cord-272513-umuiovrd	127	16	)	)	-RRB-
cord-272513-umuiovrd	127	17	.	.	.
cord-272513-umuiovrd	128	1	The	the	DT
cord-272513-umuiovrd	128	2	dotplot	dotplot	NN
cord-272513-umuiovrd	128	3	successfully	successfully	RB
cord-272513-umuiovrd	128	4	indicated	indicate	VBD
cord-272513-umuiovrd	128	5	a	a	DT
cord-272513-umuiovrd	128	6	pattern	pattern	NN
cord-272513-umuiovrd	128	7	in	in	IN
cord-272513-umuiovrd	128	8	variants	variant	NNS
cord-272513-umuiovrd	128	9	that	that	WDT
cord-272513-umuiovrd	128	10	could	could	MD
cord-272513-umuiovrd	128	11	not	not	RB
cord-272513-umuiovrd	128	12	be	be	VB
cord-272513-umuiovrd	128	13	easily	easily	RB
cord-272513-umuiovrd	128	14	identified	identify	VBN
cord-272513-umuiovrd	128	15	from	from	IN
cord-272513-umuiovrd	128	16	the	the	DT
cord-272513-umuiovrd	128	17	alignment	alignment	NN
cord-272513-umuiovrd	128	18	or	or	CC
cord-272513-umuiovrd	128	19	annotation	annotation	NN
cord-272513-umuiovrd	128	20	files	file	NNS
cord-272513-umuiovrd	128	21	.	.	.
cord-272513-umuiovrd	129	1	The	the	DT
cord-272513-umuiovrd	129	2	alignment	alignment	NN
cord-272513-umuiovrd	129	3	includes	include	VBZ
cord-272513-umuiovrd	129	4	samples	sample	NNS
cord-272513-umuiovrd	129	5	in	in	IN
cord-272513-umuiovrd	129	6	facets	facet	NNS
cord-272513-umuiovrd	129	7	based	base	VBN
cord-272513-umuiovrd	129	8	on	on	IN
cord-272513-umuiovrd	129	9	their	-PRON-	PRP$
cord-272513-umuiovrd	129	10	country	country	NN
cord-272513-umuiovrd	129	11	.	.	.
cord-272513-umuiovrd	130	1	The	the	DT
cord-272513-umuiovrd	130	2	alignment	alignment	NN
cord-272513-umuiovrd	130	3	shows	show	VBZ
cord-272513-umuiovrd	130	4	a	a	DT
cord-272513-umuiovrd	130	5	pattern	pattern	NN
cord-272513-umuiovrd	130	6	in	in	IN
cord-272513-umuiovrd	130	7	variants	variant	NNS
cord-272513-umuiovrd	130	8	that	that	WDT
cord-272513-umuiovrd	130	9	occur	occur	VBP
cord-272513-umuiovrd	130	10	between	between	IN
cord-272513-umuiovrd	130	11	each	each	DT
cord-272513-umuiovrd	130	12	country	country	NN
cord-272513-umuiovrd	130	13	.	.	.
cord-272513-umuiovrd	131	1	For	for	IN
cord-272513-umuiovrd	131	2	example	example	NN
cord-272513-umuiovrd	131	3	,	,	,
cord-272513-umuiovrd	131	4	this	this	DT
cord-272513-umuiovrd	131	5	is	be	VBZ
cord-272513-umuiovrd	131	6	prominent	prominent	JJ
cord-272513-umuiovrd	131	7	in	in	IN
cord-272513-umuiovrd	131	8	Qatar	Qatar	NNP
cord-272513-umuiovrd	131	9	,	,	,
cord-272513-umuiovrd	131	10	Jordan	Jordan	NNP
cord-272513-umuiovrd	131	11	and	and	CC
cord-272513-umuiovrd	131	12	Oman	Oman	NNP
cord-272513-umuiovrd	131	13	where	where	WRB
cord-272513-umuiovrd	131	14	the	the	DT
cord-272513-umuiovrd	131	15	pattern	pattern	NN
cord-272513-umuiovrd	131	16	makes	make	VBZ
cord-272513-umuiovrd	131	17	the	the	DT
cord-272513-umuiovrd	131	18	country	country	NN
cord-272513-umuiovrd	131	19	distinctive	distinctive	JJ
cord-272513-umuiovrd	131	20	from	from	IN
cord-272513-umuiovrd	131	21	the	the	DT
cord-272513-umuiovrd	131	22	variants	variant	NNS
cord-272513-umuiovrd	131	23	plotted	plot	VBN
cord-272513-umuiovrd	131	24	for	for	IN
cord-272513-umuiovrd	131	25	other	other	JJ
cord-272513-umuiovrd	131	26	countries	country	NNS
cord-272513-umuiovrd	131	27	.	.	.
cord-272513-umuiovrd	132	1	In	in	IN
cord-272513-umuiovrd	132	2	addition	addition	NN
cord-272513-umuiovrd	132	3	,	,	,
cord-272513-umuiovrd	132	4	the	the	DT
cord-272513-umuiovrd	132	5	phylogenetic	phylogenetic	JJ
cord-272513-umuiovrd	132	6	tree	tree	NN
cord-272513-umuiovrd	132	7	generated	generate	VBD
cord-272513-umuiovrd	132	8	branching	branch	VBG
cord-272513-umuiovrd	132	9	indicative	indicative	JJ
cord-272513-umuiovrd	132	10	of	of	IN
cord-272513-umuiovrd	132	11	an	an	DT
cord-272513-umuiovrd	132	12	Iranian	iranian	JJ
cord-272513-umuiovrd	132	13	origin	origin	NN
cord-272513-umuiovrd	132	14	(	(	-LRB-
cord-272513-umuiovrd	132	15	Figure	figure	NN
cord-272513-umuiovrd	132	16	2	2	CD
cord-272513-umuiovrd	132	17	)	)	-RRB-
cord-272513-umuiovrd	132	18	 	 	_SP
cord-272513-umuiovrd	133	1	The	the	DT
cord-272513-umuiovrd	133	2	aim	aim	NN
cord-272513-umuiovrd	133	3	of	of	IN
cord-272513-umuiovrd	133	4	this	this	DT
cord-272513-umuiovrd	133	5	study	study	NN
cord-272513-umuiovrd	133	6	was	be	VBD
cord-272513-umuiovrd	133	7	to	to	TO
cord-272513-umuiovrd	133	8	identify	identify	VB
cord-272513-umuiovrd	133	9	whether	whether	IN
cord-272513-umuiovrd	133	10	COVID-19	COVID-19	NNP
cord-272513-umuiovrd	133	11	was	be	VBD
cord-272513-umuiovrd	133	12	introduced	introduce	VBN
cord-272513-umuiovrd	133	13	to	to	IN
cord-272513-umuiovrd	133	14	the	the	DT
cord-272513-umuiovrd	133	15	Middle	Middle	NNP
cord-272513-umuiovrd	133	16	East	East	NNP
cord-272513-umuiovrd	133	17	from	from	IN
cord-272513-umuiovrd	133	18	Iran	Iran	NNP
cord-272513-umuiovrd	133	19	and	and	CC
cord-272513-umuiovrd	133	20	also	also	RB
cord-272513-umuiovrd	133	21	to	to	TO
cord-272513-umuiovrd	133	22	explore	explore	VB
cord-272513-umuiovrd	133	23	the	the	DT
cord-272513-umuiovrd	133	24	genomic	genomic	JJ
cord-272513-umuiovrd	133	25	composition	composition	NN
cord-272513-umuiovrd	133	26	in	in	IN
cord-272513-umuiovrd	133	27	the	the	DT
cord-272513-umuiovrd	133	28	region	region	NN
cord-272513-umuiovrd	133	29	.	.	.
cord-272513-umuiovrd	134	1	Our	-PRON-	PRP$
cord-272513-umuiovrd	134	2	study	study	NN
cord-272513-umuiovrd	134	3	performs	perform	VBZ
cord-272513-umuiovrd	134	4	sequence	sequence	NN
cord-272513-umuiovrd	134	5	alignment	alignment	NN
cord-272513-umuiovrd	134	6	to	to	TO
cord-272513-umuiovrd	134	7	compare	compare	VB
cord-272513-umuiovrd	134	8	all	all	DT
cord-272513-umuiovrd	134	9	sequences	sequence	NNS
cord-272513-umuiovrd	134	10	against	against	IN
cord-272513-umuiovrd	134	11	the	the	DT
cord-272513-umuiovrd	134	12	reference	reference	NN
cord-272513-umuiovrd	134	13	genome	genome	NN
cord-272513-umuiovrd	134	14	.	.	.
cord-272513-umuiovrd	135	1	Once	once	RB
cord-272513-umuiovrd	135	2	this	this	DT
cord-272513-umuiovrd	135	3	is	be	VBZ
cord-272513-umuiovrd	135	4	complete	complete	JJ
cord-272513-umuiovrd	135	5	,	,	,
cord-272513-umuiovrd	135	6	the	the	DT
cord-272513-umuiovrd	135	7	annotated	annotate	VBN
cord-272513-umuiovrd	135	8	variants	variant	NNS
cord-272513-umuiovrd	135	9	were	be	VBD
cord-272513-umuiovrd	135	10	extracted	extract	VBN
cord-272513-umuiovrd	135	11	to	to	TO
cord-272513-umuiovrd	135	12	generate	generate	VB
cord-272513-umuiovrd	135	13	a	a	DT
cord-272513-umuiovrd	135	14	plot	plot	NN
cord-272513-umuiovrd	135	15	mapping	mapping	NN
cord-272513-umuiovrd	135	16	variants	variant	NNS
cord-272513-umuiovrd	135	17	,	,	,
cord-272513-umuiovrd	135	18	grouping	group	VBG
cord-272513-umuiovrd	135	19	samples	sample	NNS
cord-272513-umuiovrd	135	20	by	by	IN
cord-272513-umuiovrd	135	21	country	country	NN
cord-272513-umuiovrd	135	22	.	.	.
cord-272513-umuiovrd	136	1	The	the	DT
cord-272513-umuiovrd	136	2	plot	plot	NN
cord-272513-umuiovrd	136	3	as	as	IN
cord-272513-umuiovrd	136	4	seen	see	VBN
cord-272513-umuiovrd	136	5	in	in	IN
cord-272513-umuiovrd	136	6	Figure	figure	NN
cord-272513-umuiovrd	136	7	1	1	CD
cord-272513-umuiovrd	136	8	,	,	,
cord-272513-umuiovrd	136	9	shows	show	VBZ
cord-272513-umuiovrd	136	10	clear	clear	JJ
cord-272513-umuiovrd	136	11	distinctive	distinctive	JJ
cord-272513-umuiovrd	136	12	patterns	pattern	NNS
cord-272513-umuiovrd	136	13	within	within	IN
cord-272513-umuiovrd	136	14	countries	country	NNS
cord-272513-umuiovrd	136	15	that	that	WDT
cord-272513-umuiovrd	136	16	are	be	VBP
cord-272513-umuiovrd	136	17	not	not	RB
cord-272513-umuiovrd	136	18	obvious	obvious	JJ
cord-272513-umuiovrd	136	19	from	from	IN
cord-272513-umuiovrd	136	20	the	the	DT
cord-272513-umuiovrd	136	21	generated	generate	VBN
cord-272513-umuiovrd	136	22	alignment	alignment	NN
cord-272513-umuiovrd	136	23	and	and	CC
cord-272513-umuiovrd	136	24	annotation	annotation	NN
cord-272513-umuiovrd	136	25	files	file	NNS
cord-272513-umuiovrd	136	26	.	.	.
cord-272513-umuiovrd	137	1	This	this	DT
cord-272513-umuiovrd	137	2	may	may	MD
cord-272513-umuiovrd	137	3	indicate	indicate	VB
cord-272513-umuiovrd	137	4	a	a	DT
cord-272513-umuiovrd	137	5	diverse	diverse	JJ
cord-272513-umuiovrd	137	6	,	,	,
cord-272513-umuiovrd	137	7	new	new	JJ
cord-272513-umuiovrd	137	8	strain	strain	NN
cord-272513-umuiovrd	137	9	is	be	VBZ
cord-272513-umuiovrd	137	10	circulating	circulate	VBG
cord-272513-umuiovrd	137	11	in	in	IN
cord-272513-umuiovrd	137	12	the	the	DT
cord-272513-umuiovrd	137	13	country	country	NN
cord-272513-umuiovrd	137	14	.	.	.
cord-272513-umuiovrd	138	1	Cyprus	Cyprus	NNP
cord-272513-umuiovrd	138	2	has	have	VBZ
cord-272513-umuiovrd	138	3	little	little	JJ
cord-272513-umuiovrd	138	4	diversity	diversity	NN
cord-272513-umuiovrd	138	5	in	in	IN
cord-272513-umuiovrd	138	6	the	the	DT
cord-272513-umuiovrd	138	7	variant	variant	JJ
cord-272513-umuiovrd	138	8	mapping	mapping	NN
cord-272513-umuiovrd	138	9	which	which	WDT
cord-272513-umuiovrd	138	10	is	be	VBZ
cord-272513-umuiovrd	138	11	surprising	surprising	JJ
cord-272513-umuiovrd	138	12	given	give	VBN
cord-272513-umuiovrd	138	13	its	-PRON-	PRP$
cord-272513-umuiovrd	138	14	late	late	JJ
cord-272513-umuiovrd	138	15	date	date	NN
cord-272513-umuiovrd	138	16	for	for	IN
cord-272513-umuiovrd	138	17	first	first	RB
cord-272513-umuiovrd	138	18	reported	report	VBN
cord-272513-umuiovrd	138	19	cases	case	NNS
cord-272513-umuiovrd	138	20	.	.	.
cord-272513-umuiovrd	139	1	Another	another	DT
cord-272513-umuiovrd	139	2	interesting	interesting	JJ
cord-272513-umuiovrd	139	3	point	point	NN
cord-272513-umuiovrd	139	4	is	be	VBZ
cord-272513-umuiovrd	139	5	that	that	DT
cord-272513-umuiovrd	139	6	time	time	NN
cord-272513-umuiovrd	139	7	-	-	HYPH
cord-272513-umuiovrd	139	8	varied	varied	JJ
cord-272513-umuiovrd	139	9	samples	sample	NNS
cord-272513-umuiovrd	139	10	were	be	VBD
cord-272513-umuiovrd	139	11	taken	take	VBN
cord-272513-umuiovrd	139	12	for	for	IN
cord-272513-umuiovrd	139	13	countries	country	NNS
cord-272513-umuiovrd	139	14	with	with	IN
cord-272513-umuiovrd	139	15	10	10	CD
cord-272513-umuiovrd	139	16	samples	sample	NNS
cord-272513-umuiovrd	139	17	.	.	.
cord-272513-umuiovrd	140	1	We	-PRON-	PRP
cord-272513-umuiovrd	140	2	see	see	VBP
cord-272513-umuiovrd	140	3	not	not	RB
cord-272513-umuiovrd	140	4	indication	indication	VB
cord-272513-umuiovrd	140	5	that	that	IN
cord-272513-umuiovrd	140	6	there	there	EX
cord-272513-umuiovrd	140	7	are	be	VBP
cord-272513-umuiovrd	140	8	distinct	distinct	JJ
cord-272513-umuiovrd	140	9	groups	group	NNS
cord-272513-umuiovrd	140	10	within	within	IN
cord-272513-umuiovrd	140	11	countries	country	NNS
cord-272513-umuiovrd	140	12	.	.	.
cord-272513-umuiovrd	141	1	This	this	DT
cord-272513-umuiovrd	141	2	further	further	RB
cord-272513-umuiovrd	141	3	indicates	indicate	VBZ
cord-272513-umuiovrd	141	4	the	the	DT
cord-272513-umuiovrd	141	5	the	the	DT
cord-272513-umuiovrd	141	6	mutation	mutation	NN
cord-272513-umuiovrd	141	7	frequency	frequency	NN
cord-272513-umuiovrd	141	8	is	be	VBZ
cord-272513-umuiovrd	141	9	low	low	JJ
cord-272513-umuiovrd	141	10	.	.	.
cord-272513-umuiovrd	142	1	It	-PRON-	PRP
cord-272513-umuiovrd	142	2	also	also	RB
cord-272513-umuiovrd	142	3	indicates	indicate	VBZ
cord-272513-umuiovrd	142	4	that	that	IN
cord-272513-umuiovrd	142	5	there	there	EX
cord-272513-umuiovrd	142	6	is	be	VBZ
cord-272513-umuiovrd	142	7	more	more	JJR
cord-272513-umuiovrd	142	8	variation	variation	NN
cord-272513-umuiovrd	142	9	in	in	IN
cord-272513-umuiovrd	142	10	the	the	DT
cord-272513-umuiovrd	142	11	genomic	genomic	JJ
cord-272513-umuiovrd	142	12	composition	composition	NN
cord-272513-umuiovrd	142	13	in	in	IN
cord-272513-umuiovrd	142	14	samples	sample	NNS
cord-272513-umuiovrd	142	15	from	from	IN
cord-272513-umuiovrd	142	16	different	different	JJ
cord-272513-umuiovrd	142	17	countries	country	NNS
cord-272513-umuiovrd	142	18	than	than	IN
cord-272513-umuiovrd	142	19	differences	difference	NNS
cord-272513-umuiovrd	142	20	found	find	VBN
cord-272513-umuiovrd	142	21	in	in	IN
cord-272513-umuiovrd	142	22	samples	sample	NNS
cord-272513-umuiovrd	142	23	from	from	IN
cord-272513-umuiovrd	142	24	different	different	JJ
cord-272513-umuiovrd	142	25	collection	collection	NN
cord-272513-umuiovrd	142	26	times	time	NNS
cord-272513-umuiovrd	142	27	.	.	.
cord-272513-umuiovrd	143	1	Smaller	small	JJR
cord-272513-umuiovrd	143	2	populations	population	NNS
cord-272513-umuiovrd	143	3	can	can	MD
cord-272513-umuiovrd	143	4	cause	cause	VB
cord-272513-umuiovrd	143	5	greater	great	JJR
cord-272513-umuiovrd	143	6	accumulation	accumulation	NN
cord-272513-umuiovrd	143	7	of	of	IN
cord-272513-umuiovrd	143	8	variants	variant	NNS
cord-272513-umuiovrd	143	9	through	through	IN
cord-272513-umuiovrd	143	10	genetic	genetic	JJ
cord-272513-umuiovrd	143	11	drift	drift	NN
cord-272513-umuiovrd	143	12	.	.	.
cord-272513-umuiovrd	144	1	This	this	DT
cord-272513-umuiovrd	144	2	may	may	MD
cord-272513-umuiovrd	144	3	occur	occur	VB
cord-272513-umuiovrd	144	4	given	give	VBN
cord-272513-umuiovrd	144	5	local	local	JJ
cord-272513-umuiovrd	144	6	lockdowns	lockdown	NNS
cord-272513-umuiovrd	144	7	and	and	CC
cord-272513-umuiovrd	144	8	travel	travel	NN
cord-272513-umuiovrd	144	9	restrictions	restriction	NNS
cord-272513-umuiovrd	144	10	that	that	WDT
cord-272513-umuiovrd	144	11	have	have	VBP
cord-272513-umuiovrd	144	12	been	be	VBN
cord-272513-umuiovrd	144	13	enforced	enforce	VBN
cord-272513-umuiovrd	144	14	worldwide	worldwide	RB
cord-272513-umuiovrd	144	15	.	.	.
cord-272513-umuiovrd	145	1	It	-PRON-	PRP
cord-272513-umuiovrd	145	2	is	be	VBZ
cord-272513-umuiovrd	145	3	possible	possible	JJ
cord-272513-umuiovrd	145	4	that	that	IN
cord-272513-umuiovrd	145	5	these	these	DT
cord-272513-umuiovrd	145	6	genomic	genomic	JJ
cord-272513-umuiovrd	145	7	strains	strain	NNS
cord-272513-umuiovrd	145	8	with	with	IN
cord-272513-umuiovrd	145	9	new	new	JJ
cord-272513-umuiovrd	145	10	mutations	mutation	NNS
cord-272513-umuiovrd	145	11	may	may	MD
cord-272513-umuiovrd	145	12	create	create	VB
cord-272513-umuiovrd	145	13	a	a	DT
cord-272513-umuiovrd	145	14	situation	situation	NN
cord-272513-umuiovrd	145	15	where	where	WRB
cord-272513-umuiovrd	145	16	the	the	DT
cord-272513-umuiovrd	145	17	countries	country	NNS
cord-272513-umuiovrd	145	18	develop	develop	VBP
cord-272513-umuiovrd	145	19	a	a	DT
cord-272513-umuiovrd	145	20	deathly	deathly	JJ
cord-272513-umuiovrd	145	21	strain	strain	NN
cord-272513-umuiovrd	145	22	that	that	WDT
cord-272513-umuiovrd	145	23	is	be	VBZ
cord-272513-umuiovrd	145	24	not	not	RB
cord-272513-umuiovrd	145	25	prominent	prominent	JJ
cord-272513-umuiovrd	145	26	in	in	IN
cord-272513-umuiovrd	145	27	other	other	JJ
cord-272513-umuiovrd	145	28	parts	part	NNS
cord-272513-umuiovrd	145	29	of	of	IN
cord-272513-umuiovrd	145	30	the	the	DT
cord-272513-umuiovrd	145	31	world	world	NN
cord-272513-umuiovrd	145	32	.	.	.
cord-272513-umuiovrd	146	1	This	this	DT
cord-272513-umuiovrd	146	2	could	could	MD
cord-272513-umuiovrd	146	3	result	result	VB
cord-272513-umuiovrd	146	4	in	in	IN
cord-272513-umuiovrd	146	5	a	a	DT
cord-272513-umuiovrd	146	6	situation	situation	NN
cord-272513-umuiovrd	146	7	where	where	WRB
cord-272513-umuiovrd	146	8	a	a	DT
cord-272513-umuiovrd	146	9	country	country	NN
cord-272513-umuiovrd	146	10	is	be	VBZ
cord-272513-umuiovrd	146	11	disproportionately	disproportionately	RB
cord-272513-umuiovrd	146	12	affected	affect	VBN
cord-272513-umuiovrd	146	13	by	by	IN
cord-272513-umuiovrd	146	14	accumulating	accumulate	VBG
cord-272513-umuiovrd	146	15	deaths	death	NNS
cord-272513-umuiovrd	146	16	or	or	CC
cord-272513-umuiovrd	146	17	an	an	DT
cord-272513-umuiovrd	146	18	inefficient	inefficient	JJ
cord-272513-umuiovrd	146	19	vaccine	vaccine	NN
cord-272513-umuiovrd	146	20	.	.	.
cord-272513-umuiovrd	147	1	Phylogenetic	phylogenetic	JJ
cord-272513-umuiovrd	147	2	trees	tree	NNS
cord-272513-umuiovrd	147	3	help	help	VBP
cord-272513-umuiovrd	147	4	in	in	IN
cord-272513-umuiovrd	147	5	understanding	understand	VBG
cord-272513-umuiovrd	147	6	the	the	DT
cord-272513-umuiovrd	147	7	evolutionary	evolutionary	JJ
cord-272513-umuiovrd	147	8	relationships	relationship	NNS
cord-272513-umuiovrd	147	9	between	between	IN
cord-272513-umuiovrd	147	10	groups	group	NNS
cord-272513-umuiovrd	147	11	.	.	.
cord-272513-umuiovrd	148	1	In	in	IN
cord-272513-umuiovrd	148	2	the	the	DT
cord-272513-umuiovrd	148	3	present	present	JJ
cord-272513-umuiovrd	148	4	context	context	NN
cord-272513-umuiovrd	148	5	,	,	,
cord-272513-umuiovrd	148	6	we	-PRON-	PRP
cord-272513-umuiovrd	148	7	use	use	VBP
cord-272513-umuiovrd	148	8	them	-PRON-	PRP
cord-272513-umuiovrd	148	9	to	to	TO
cord-272513-umuiovrd	148	10	identify	identify	VB
cord-272513-umuiovrd	148	11	the	the	DT
cord-272513-umuiovrd	148	12	earliest	early	JJS
cord-272513-umuiovrd	148	13	strains	strain	NNS
cord-272513-umuiovrd	148	14	and	and	CC
cord-272513-umuiovrd	148	15	to	to	TO
cord-272513-umuiovrd	148	16	track	track	VB
cord-272513-umuiovrd	148	17	the	the	DT
cord-272513-umuiovrd	148	18	spread	spread	NN
cord-272513-umuiovrd	148	19	of	of	IN
cord-272513-umuiovrd	148	20	COVID-19	covid-19	NN
cord-272513-umuiovrd	148	21	across	across	IN
cord-272513-umuiovrd	148	22	the	the	DT
cord-272513-umuiovrd	148	23	Middle	Middle	NNP
cord-272513-umuiovrd	148	24	East	East	NNP
cord-272513-umuiovrd	148	25	.	.	.
cord-272513-umuiovrd	149	1	The	the	DT
cord-272513-umuiovrd	149	2	tree	tree	NN
cord-272513-umuiovrd	149	3	shows	show	VBZ
cord-272513-umuiovrd	149	4	that	that	IN
cord-272513-umuiovrd	149	5	UAE	UAE	NNP
cord-272513-umuiovrd	149	6	samples	sample	NNS
cord-272513-umuiovrd	149	7	are	be	VBP
cord-272513-umuiovrd	149	8	distinguished	distinguished	JJ
cord-272513-umuiovrd	149	9	and	and	CC
cord-272513-umuiovrd	149	10	form	form	VB
cord-272513-umuiovrd	149	11	one	one	CD
cord-272513-umuiovrd	149	12	clade	clade	NN
cord-272513-umuiovrd	149	13	.	.	.
cord-272513-umuiovrd	150	1	This	this	DT
cord-272513-umuiovrd	150	2	correlates	correlate	VBZ
cord-272513-umuiovrd	150	3	with	with	IN
cord-272513-umuiovrd	150	4	their	-PRON-	PRP$
cord-272513-umuiovrd	150	5	early	early	JJ
cord-272513-umuiovrd	150	6	intervention	intervention	NN
cord-272513-umuiovrd	150	7	and	and	CC
cord-272513-umuiovrd	150	8	lockdown	lockdown	NN
cord-272513-umuiovrd	150	9	and	and	CC
cord-272513-umuiovrd	150	10	subsequently	subsequently	RB
cord-272513-umuiovrd	150	11	appears	appear	VBZ
cord-272513-umuiovrd	150	12	to	to	TO
cord-272513-umuiovrd	150	13	have	have	VB
cord-272513-umuiovrd	150	14	resulted	result	VBN
cord-272513-umuiovrd	150	15	in	in	IN
cord-272513-umuiovrd	150	16	a	a	DT
cord-272513-umuiovrd	150	17	unique	unique	JJ
cord-272513-umuiovrd	150	18	genome	genome	NN
cord-272513-umuiovrd	150	19	.	.	.
cord-272513-umuiovrd	151	1	Samples	sample	NNS
cord-272513-umuiovrd	151	2	from	from	IN
cord-272513-umuiovrd	151	3	Qatar	Qatar	NNP
cord-272513-umuiovrd	151	4	also	also	RB
cord-272513-umuiovrd	151	5	form	form	VBP
cord-272513-umuiovrd	151	6	the	the	DT
cord-272513-umuiovrd	151	7	majority	majority	NN
cord-272513-umuiovrd	151	8	of	of	IN
cord-272513-umuiovrd	151	9	1	1	CD
cord-272513-umuiovrd	151	10	clade	clade	NN
cord-272513-umuiovrd	151	11	,	,	,
cord-272513-umuiovrd	151	12	with	with	IN
cord-272513-umuiovrd	151	13	many	many	JJ
cord-272513-umuiovrd	151	14	of	of	IN
cord-272513-umuiovrd	151	15	the	the	DT
cord-272513-umuiovrd	151	16	Wuhan	Wuhan	NNP
cord-272513-umuiovrd	151	17	samples	sample	NNS
cord-272513-umuiovrd	151	18	,	,	,
cord-272513-umuiovrd	151	19	indicating	indicate	VBG
cord-272513-umuiovrd	151	20	that	that	IN
cord-272513-umuiovrd	151	21	they	-PRON-	PRP
cord-272513-umuiovrd	151	22	are	be	VBP
cord-272513-umuiovrd	151	23	similar	similar	JJ
cord-272513-umuiovrd	151	24	to	to	IN
cord-272513-umuiovrd	151	25	the	the	DT
cord-272513-umuiovrd	151	26	Wuhan	Wuhan	NNP
cord-272513-umuiovrd	151	27	samples	sample	NNS
cord-272513-umuiovrd	151	28	and	and	CC
cord-272513-umuiovrd	151	29	show	show	VB
cord-272513-umuiovrd	151	30	little	little	JJ
cord-272513-umuiovrd	151	31	distinction	distinction	NN
cord-272513-umuiovrd	151	32	.	.	.
cord-272513-umuiovrd	152	1	Egypt	Egypt	NNP
cord-272513-umuiovrd	152	2	also	also	RB
cord-272513-umuiovrd	152	3	becomes	become	VBZ
cord-272513-umuiovrd	152	4	a	a	DT
cord-272513-umuiovrd	152	5	distinct	distinct	JJ
cord-272513-umuiovrd	152	6	branch	branch	NN
cord-272513-umuiovrd	152	7	earlier	early	RBR
cord-272513-umuiovrd	152	8	than	than	IN
cord-272513-umuiovrd	152	9	most	most	JJS
cord-272513-umuiovrd	152	10	samples	sample	NNS
cord-272513-umuiovrd	152	11	.	.	.
cord-272513-umuiovrd	153	1	These	these	DT
cord-272513-umuiovrd	153	2	examples	example	NNS
cord-272513-umuiovrd	153	3	are	be	VBP
cord-272513-umuiovrd	153	4	indicative	indicative	JJ
cord-272513-umuiovrd	153	5	of	of	IN
cord-272513-umuiovrd	153	6	the	the	DT
cord-272513-umuiovrd	153	7	global	global	JJ
cord-272513-umuiovrd	153	8	response	response	NN
cord-272513-umuiovrd	153	9	-the	-the	ADD
cord-272513-umuiovrd	153	10	lockdown	lockdown	NN
cord-272513-umuiovrd	153	11	of	of	IN
cord-272513-umuiovrd	153	12	each	each	DT
cord-272513-umuiovrd	153	13	country	country	NN
cord-272513-umuiovrd	153	14	and	and	CC
cord-272513-umuiovrd	153	15	prevention	prevention	NN
cord-272513-umuiovrd	153	16	of	of	IN
cord-272513-umuiovrd	153	17	spreading	spreading	NN
cord-272513-umuiovrd	153	18	has	have	VBZ
cord-272513-umuiovrd	153	19	resulted	result	VBN
cord-272513-umuiovrd	153	20	in	in	IN
cord-272513-umuiovrd	153	21	SARS	SARS	NNP
cord-272513-umuiovrd	153	22	-	-	HYPH
cord-272513-umuiovrd	153	23	CoV-2	CoV-2	NNP
cord-272513-umuiovrd	153	24	strains	strain	NNS
cord-272513-umuiovrd	153	25	of	of	IN
cord-272513-umuiovrd	153	26	great	great	JJ
cord-272513-umuiovrd	153	27	similarity	similarity	NN
cord-272513-umuiovrd	153	28	within	within	IN
cord-272513-umuiovrd	153	29	each	each	DT
cord-272513-umuiovrd	153	30	country	country	NN
cord-272513-umuiovrd	153	31	.	.	.
cord-272513-umuiovrd	154	1	If	if	IN
cord-272513-umuiovrd	154	2	lockdowns	lockdown	NNS
cord-272513-umuiovrd	154	3	were	be	VBD
cord-272513-umuiovrd	154	4	not	not	RB
cord-272513-umuiovrd	154	5	enforced	enforce	VBN
cord-272513-umuiovrd	154	6	,	,	,
cord-272513-umuiovrd	154	7	it	-PRON-	PRP
cord-272513-umuiovrd	154	8	is	be	VBZ
cord-272513-umuiovrd	154	9	likely	likely	JJ
cord-272513-umuiovrd	154	10	that	that	IN
cord-272513-umuiovrd	154	11	these	these	DT
cord-272513-umuiovrd	154	12	clades	clade	NNS
cord-272513-umuiovrd	154	13	would	would	MD
cord-272513-umuiovrd	154	14	be	be	VB
cord-272513-umuiovrd	154	15	less	less	RBR
cord-272513-umuiovrd	154	16	distinguisable	distinguisable	JJ
cord-272513-umuiovrd	154	17	as	as	IN
cord-272513-umuiovrd	154	18	mutations	mutation	NNS
cord-272513-umuiovrd	154	19	are	be	VBP
cord-272513-umuiovrd	154	20	spread	spread	VBN
cord-272513-umuiovrd	154	21	between	between	IN
cord-272513-umuiovrd	154	22	countries	country	NNS
cord-272513-umuiovrd	154	23	.	.	.
cord-272513-umuiovrd	155	1	As	as	IN
cord-272513-umuiovrd	155	2	we	-PRON-	PRP
cord-272513-umuiovrd	155	3	expected	expect	VBD
cord-272513-umuiovrd	155	4	,	,	,
cord-272513-umuiovrd	155	5	2	2	CD
cord-272513-umuiovrd	155	6	of	of	IN
cord-272513-umuiovrd	155	7	the	the	DT
cord-272513-umuiovrd	155	8	highest	high	JJS
cord-272513-umuiovrd	155	9	branches	branch	NNS
cord-272513-umuiovrd	155	10	points	point	NNS
cord-272513-umuiovrd	155	11	attach	attach	VBP
cord-272513-umuiovrd	155	12	to	to	IN
cord-272513-umuiovrd	155	13	Iranian	iranian	JJ
cord-272513-umuiovrd	155	14	samples	sample	NNS
cord-272513-umuiovrd	155	15	,	,	,
cord-272513-umuiovrd	155	16	further	further	RB
cord-272513-umuiovrd	155	17	implementing	implement	VBG
cord-272513-umuiovrd	155	18	Iran	Iran	NNP
cord-272513-umuiovrd	155	19	in	in	IN
cord-272513-umuiovrd	155	20	the	the	DT
cord-272513-umuiovrd	155	21	initial	initial	JJ
cord-272513-umuiovrd	155	22	spread	spread	NN
cord-272513-umuiovrd	155	23	across	across	IN
cord-272513-umuiovrd	155	24	the	the	DT
cord-272513-umuiovrd	155	25	Middle	Middle	NNP
cord-272513-umuiovrd	155	26	East	East	NNP
cord-272513-umuiovrd	155	27	.	.	.
cord-272513-umuiovrd	156	1	The	the	DT
cord-272513-umuiovrd	156	2	phylogenetic	phylogenetic	JJ
cord-272513-umuiovrd	156	3	tree	tree	NN
cord-272513-umuiovrd	156	4	therefore	therefore	RB
cord-272513-umuiovrd	156	5	indicates	indicate	VBZ
cord-272513-umuiovrd	156	6	what	what	WP
cord-272513-umuiovrd	156	7	we	-PRON-	PRP
cord-272513-umuiovrd	156	8	suggest	suggest	VBP
cord-272513-umuiovrd	156	9	in	in	IN
cord-272513-umuiovrd	156	10	our	-PRON-	PRP$
cord-272513-umuiovrd	156	11	hypothesis	hypothesis	NN
cord-272513-umuiovrd	156	12	-most	-most	NN
cord-272513-umuiovrd	156	13	samples	sample	NNS
cord-272513-umuiovrd	156	14	originate	originate	VBP
cord-272513-umuiovrd	156	15	from	from	IN
cord-272513-umuiovrd	156	16	the	the	DT
cord-272513-umuiovrd	156	17	Iranian	iranian	JJ
cord-272513-umuiovrd	156	18	sample	sample	NN
cord-272513-umuiovrd	156	19	.	.	.
cord-272513-umuiovrd	157	1	This	this	DT
cord-272513-umuiovrd	157	2	is	be	VBZ
cord-272513-umuiovrd	157	3	not	not	RB
cord-272513-umuiovrd	157	4	surprising	surprising	JJ
cord-272513-umuiovrd	157	5	given	give	VBN
cord-272513-umuiovrd	157	6	the	the	DT
cord-272513-umuiovrd	157	7	vast	vast	JJ
cord-272513-umuiovrd	157	8	number	number	NN
cord-272513-umuiovrd	157	9	of	of	IN
cord-272513-umuiovrd	157	10	cases	case	NNS
cord-272513-umuiovrd	157	11	and	and	CC
cord-272513-umuiovrd	157	12	early	early	JJ
cord-272513-umuiovrd	157	13	crisis	crisis	NN
cord-272513-umuiovrd	157	14	state	state	NN
cord-272513-umuiovrd	157	15	of	of	IN
cord-272513-umuiovrd	157	16	the	the	DT
cord-272513-umuiovrd	157	17	country	country	NN
cord-272513-umuiovrd	157	18	.	.	.
cord-272513-umuiovrd	158	1	However	however	RB
cord-272513-umuiovrd	158	2	,	,	,
cord-272513-umuiovrd	158	3	it	-PRON-	PRP
cord-272513-umuiovrd	158	4	is	be	VBZ
cord-272513-umuiovrd	158	5	useful	useful	JJ
cord-272513-umuiovrd	158	6	to	to	TO
cord-272513-umuiovrd	158	7	see	see	VB
cord-272513-umuiovrd	158	8	that	that	IN
cord-272513-umuiovrd	158	9	the	the	DT
cord-272513-umuiovrd	158	10	variant	variant	NN
cord-272513-umuiovrd	158	11	analysis	analysis	NN
cord-272513-umuiovrd	158	12	shows	show	VBZ
cord-272513-umuiovrd	158	13	what	what	WP
cord-272513-umuiovrd	158	14	we	-PRON-	PRP
cord-272513-umuiovrd	158	15	suspect	suspect	VBP
cord-272513-umuiovrd	158	16	at	at	IN
cord-272513-umuiovrd	158	17	the	the	DT
cord-272513-umuiovrd	158	18	genome	genome	NN
cord-272513-umuiovrd	158	19	level	level	NN
cord-272513-umuiovrd	158	20	.	.	.
cord-272513-umuiovrd	159	1	A	a	DT
cord-272513-umuiovrd	159	2	related	related	JJ
cord-272513-umuiovrd	159	3	study	study	NN
cord-272513-umuiovrd	159	4	also	also	RB
cord-272513-umuiovrd	159	5	came	come	VBD
cord-272513-umuiovrd	159	6	to	to	IN
cord-272513-umuiovrd	159	7	this	this	DT
cord-272513-umuiovrd	159	8	conclusion	conclusion	NN
cord-272513-umuiovrd	159	9	by	by	IN
cord-272513-umuiovrd	159	10	using	use	VBG
cord-272513-umuiovrd	159	11	contact	contact	NN
cord-272513-umuiovrd	159	12	tracing	trace	VBG
cord-272513-umuiovrd	159	13	from	from	IN
cord-272513-umuiovrd	159	14	cases	case	NNS
cord-272513-umuiovrd	159	15	related	relate	VBN
cord-272513-umuiovrd	159	16	to	to	IN
cord-272513-umuiovrd	159	17	religious	religious	JJ
cord-272513-umuiovrd	159	18	events	event	NNS
cord-272513-umuiovrd	159	19	in	in	IN
cord-272513-umuiovrd	159	20	the	the	DT
cord-272513-umuiovrd	159	21	city	city	NN
cord-272513-umuiovrd	159	22	of	of	IN
cord-272513-umuiovrd	159	23	Qom	Qom	NNP
cord-272513-umuiovrd	159	24	,	,	,
cord-272513-umuiovrd	159	25	Iran	Iran	NNP
cord-272513-umuiovrd	159	26	16	16	CD
cord-272513-umuiovrd	159	27	.	.	.
cord-272513-umuiovrd	160	1	Risk	risk	NN
cord-272513-umuiovrd	160	2	assessment	assessment	NN
cord-272513-umuiovrd	160	3	:	:	:
cord-272513-umuiovrd	160	4	Outbreak	outbreak	NN
cord-272513-umuiovrd	160	5	of	of	IN
cord-272513-umuiovrd	160	6	acute	acute	JJ
cord-272513-umuiovrd	160	7	respiratory	respiratory	JJ
cord-272513-umuiovrd	160	8	syndrome	syndrome	NN
cord-272513-umuiovrd	160	9	associated	associate	VBN
cord-272513-umuiovrd	160	10	with	with	IN
cord-272513-umuiovrd	160	11	a	a	DT
cord-272513-umuiovrd	160	12	novel	novel	JJ
cord-272513-umuiovrd	160	13	coronavirus	coronavirus	NN
cord-272513-umuiovrd	160	14	COVID-19	covid-19	VB
cord-272513-umuiovrd	160	15	situation	situation	NN
cord-272513-umuiovrd	160	16	reports	report	VBZ
cord-272513-umuiovrd	160	17	Mapping	map	VBG
cord-272513-umuiovrd	160	18	the	the	DT
cord-272513-umuiovrd	160	19	incidence	incidence	NN
cord-272513-umuiovrd	160	20	of	of	IN
cord-272513-umuiovrd	160	21	the	the	DT
cord-272513-umuiovrd	160	22	COVID-19	covid-19	JJ
cord-272513-umuiovrd	160	23	hotspot	hotspot	NN
cord-272513-umuiovrd	160	24	in	in	IN
cord-272513-umuiovrd	160	25	Iran	Iran	NNP
cord-272513-umuiovrd	160	26	-Implications	-implication	VBZ
cord-272513-umuiovrd	160	27	for	for	IN
cord-272513-umuiovrd	160	28	Travellers	Travellers	NNP
cord-272513-umuiovrd	160	29	Challenges	challenge	VBZ
cord-272513-umuiovrd	160	30	to	to	IN
cord-272513-umuiovrd	160	31	testing	test	VBG
cord-272513-umuiovrd	160	32	COVID-19	covid-19	VB
cord-272513-umuiovrd	160	33	in	in	IN
cord-272513-umuiovrd	160	34	conflict	conflict	NN
cord-272513-umuiovrd	160	35	zones	zone	NNS
cord-272513-umuiovrd	160	36	:	:	:
cord-272513-umuiovrd	160	37	Yemen	Yemen	NNP
cord-272513-umuiovrd	160	38	as	as	IN
cord-272513-umuiovrd	160	39	an	an	DT
cord-272513-umuiovrd	160	40	example	example	NN
cord-272513-umuiovrd	160	41	Phylogenetic	Phylogenetic	NNP
cord-272513-umuiovrd	160	42	Analysis	Analysis	NNP
cord-272513-umuiovrd	160	43	and	and	CC
cord-272513-umuiovrd	160	44	Structural	Structural	NNP
cord-272513-umuiovrd	160	45	Modeling	Modeling	NNP
cord-272513-umuiovrd	160	46	of	of	IN
cord-272513-umuiovrd	160	47	SARS	SARS	NNP
cord-272513-umuiovrd	160	48	-	-	HYPH
cord-272513-umuiovrd	160	49	CoV-2	CoV-2	NNP
cord-272513-umuiovrd	160	50	Spike	Spike	NNP
cord-272513-umuiovrd	160	51	Protein	Protein	NNP
cord-272513-umuiovrd	160	52	Reveals	reveal	VBZ
cord-272513-umuiovrd	160	53	an	an	DT
cord-272513-umuiovrd	160	54	Evolutionary	Evolutionary	NNP
cord-272513-umuiovrd	160	55	Distinct	Distinct	NNP
cord-272513-umuiovrd	160	56	and	and	CC
cord-272513-umuiovrd	160	57	Proteolytically	Proteolytically	NNP
cord-272513-umuiovrd	160	58	Sensitive	Sensitive	NNP
cord-272513-umuiovrd	160	59	Activation	Activation	NNP
cord-272513-umuiovrd	160	60	Loop	Loop	NNP
cord-272513-umuiovrd	160	61	On	on	IN
cord-272513-umuiovrd	160	62	the	the	DT
cord-272513-umuiovrd	160	63	origin	origin	NN
cord-272513-umuiovrd	160	64	and	and	CC
cord-272513-umuiovrd	160	65	continuing	continue	VBG
cord-272513-umuiovrd	160	66	evolution	evolution	NN
cord-272513-umuiovrd	160	67	of	of	IN
cord-272513-umuiovrd	160	68	SARS	SARS	NNP
cord-272513-umuiovrd	160	69	-	-	HYPH
cord-272513-umuiovrd	160	70	CoV-2	CoV-2	NNP
cord-272513-umuiovrd	160	71	Data	Data	NNP
cord-272513-umuiovrd	160	72	,	,	,
cord-272513-umuiovrd	160	73	disease	disease	NN
cord-272513-umuiovrd	160	74	and	and	CC
cord-272513-umuiovrd	160	75	diplomacy	diplomacy	NN
cord-272513-umuiovrd	160	76	:	:	:
cord-272513-umuiovrd	160	77	GISAID	GISAID	NNP
cord-272513-umuiovrd	160	78	's	's	POS
cord-272513-umuiovrd	160	79	innovative	innovative	JJ
cord-272513-umuiovrd	160	80	contribution	contribution	NN
cord-272513-umuiovrd	160	81	to	to	IN
cord-272513-umuiovrd	160	82	global	global	JJ
cord-272513-umuiovrd	160	83	health	health	NN
cord-272513-umuiovrd	160	84	Fast	Fast	NNP
cord-272513-umuiovrd	160	85	,	,	,
cord-272513-umuiovrd	160	86	scalable	scalable	JJ
cord-272513-umuiovrd	160	87	generation	generation	NN
cord-272513-umuiovrd	160	88	of	of	IN
cord-272513-umuiovrd	160	89	high	high	JJ
cord-272513-umuiovrd	160	90	-	-	HYPH
cord-272513-umuiovrd	160	91	quality	quality	NN
cord-272513-umuiovrd	160	92	protein	protein	NN
cord-272513-umuiovrd	160	93	multiple	multiple	JJ
cord-272513-umuiovrd	160	94	sequence	sequence	NN
cord-272513-umuiovrd	160	95	alignments	alignment	NNS
cord-272513-umuiovrd	160	96	using	use	VBG
cord-272513-umuiovrd	160	97	Clustal	Clustal	NNP
cord-272513-umuiovrd	160	98	Omega	Omega	NNP
cord-272513-umuiovrd	160	99	SNP	SNP	NNP
cord-272513-umuiovrd	160	100	-	-	HYPH
cord-272513-umuiovrd	160	101	sites	site	NNS
cord-272513-umuiovrd	160	102	:	:	:
cord-272513-umuiovrd	160	103	rapid	rapid	JJ
cord-272513-umuiovrd	160	104	efficient	efficient	JJ
cord-272513-umuiovrd	160	105	extraction	extraction	NN
cord-272513-umuiovrd	160	106	of	of	IN
cord-272513-umuiovrd	160	107	SNPs	SNPs	NNPS
cord-272513-umuiovrd	160	108	from	from	IN
cord-272513-umuiovrd	160	109	multi	multi	JJ
cord-272513-umuiovrd	160	110	-	-	JJ
cord-272513-umuiovrd	160	111	FASTA	fasta	JJ
cord-272513-umuiovrd	160	112	alignments	alignment	NNS
cord-272513-umuiovrd	161	1	A	a	DT
cord-272513-umuiovrd	161	2	program	program	NN
cord-272513-umuiovrd	161	3	for	for	IN
cord-272513-umuiovrd	161	4	annotating	annotate	VBG
cord-272513-umuiovrd	161	5	and	and	CC
cord-272513-umuiovrd	161	6	predicting	predict	VBG
cord-272513-umuiovrd	161	7	the	the	DT
cord-272513-umuiovrd	161	8	effects	effect	NNS
cord-272513-umuiovrd	161	9	of	of	IN
cord-272513-umuiovrd	161	10	single	single	JJ
cord-272513-umuiovrd	161	11	nucleotide	nucleotide	JJ
cord-272513-umuiovrd	161	12	polymorphisms	polymorphism	NNS
cord-272513-umuiovrd	161	13	,	,	,
cord-272513-umuiovrd	161	14	SnpEff	snpeff	NN
cord-272513-umuiovrd	161	15	:	:	:
cord-272513-umuiovrd	161	16	SNPs	SNPs	NNP
cord-272513-umuiovrd	161	17	in	in	IN
cord-272513-umuiovrd	161	18	the	the	DT
cord-272513-umuiovrd	161	19	genome	genome	NN
cord-272513-umuiovrd	161	20	of	of	IN
cord-272513-umuiovrd	161	21	Drosophila	Drosophila	NNP
cord-272513-umuiovrd	161	22	melanogaster	melanogaster	NN
cord-272513-umuiovrd	161	23	strain	strain	NN
cord-272513-umuiovrd	161	24	w1118	w1118	.
cord-272513-umuiovrd	161	25	The	the	DT
cord-272513-umuiovrd	161	26	Galaxy	Galaxy	NNP
cord-272513-umuiovrd	161	27	platform	platform	NN
cord-272513-umuiovrd	161	28	for	for	IN
cord-272513-umuiovrd	161	29	accessible	accessible	JJ
cord-272513-umuiovrd	161	30	,	,	,
cord-272513-umuiovrd	161	31	reproducible	reproducible	JJ
cord-272513-umuiovrd	161	32	and	and	CC
cord-272513-umuiovrd	161	33	collaborative	collaborative	JJ
cord-272513-umuiovrd	161	34	biomedical	biomedical	JJ
cord-272513-umuiovrd	161	35	analyses	analysis	NNS
cord-272513-umuiovrd	161	36	:	:	:
cord-272513-umuiovrd	162	1	2018	2018	CD
cord-272513-umuiovrd	162	2	update	update	NN
cord-272513-umuiovrd	162	3	R	r	NN
cord-272513-umuiovrd	162	4	:	:	:
cord-272513-umuiovrd	162	5	A	a	DT
cord-272513-umuiovrd	162	6	language	language	NN
cord-272513-umuiovrd	162	7	and	and	CC
cord-272513-umuiovrd	162	8	environment	environment	NN
cord-272513-umuiovrd	162	9	for	for	IN
cord-272513-umuiovrd	162	10	statistical	statistical	JJ
cord-272513-umuiovrd	162	11	computing	computing	NN
cord-272513-umuiovrd	162	12	.	.	.
cord-272513-umuiovrd	163	1	R	R	NNP
cord-272513-umuiovrd	163	2	Foundation	Foundation	NNP
cord-272513-umuiovrd	163	3	for	for	IN
cord-272513-umuiovrd	163	4	Statistical	Statistical	NNP
cord-272513-umuiovrd	163	5	Computing	Computing	NNP
cord-272513-umuiovrd	163	6	dplyr	dplyr	NNS
cord-272513-umuiovrd	163	7	:	:	:
cord-272513-umuiovrd	164	1	A	a	DT
cord-272513-umuiovrd	164	2	Grammar	Grammar	NNP
cord-272513-umuiovrd	164	3	of	of	IN
cord-272513-umuiovrd	164	4	Data	Data	NNP
cord-272513-umuiovrd	164	5	Manipulation	manipulation	NN
cord-272513-umuiovrd	164	6	ggplot2	ggplot2	NN
cord-272513-umuiovrd	164	7	:	:	:
cord-272513-umuiovrd	164	8	Elegant	Elegant	NNP
cord-272513-umuiovrd	164	9	Graphics	Graphics	NNPS
cord-272513-umuiovrd	164	10	for	for	IN
cord-272513-umuiovrd	164	11	Data	Data	NNP
cord-272513-umuiovrd	164	12	Analysis	Analysis	NNP
cord-272513-umuiovrd	165	1	Bayesian	bayesian	JJ
cord-272513-umuiovrd	165	2	phylogenetic	phylogenetic	NN
cord-272513-umuiovrd	165	3	and	and	CC
cord-272513-umuiovrd	165	4	phylodynamic	phylodynamic	JJ
cord-272513-umuiovrd	165	5	data	datum	NNS
cord-272513-umuiovrd	165	6	integration	integration	NN
cord-272513-umuiovrd	165	7	using	use	VBG
cord-272513-umuiovrd	165	8	BEAST	BEAST	NNP
cord-272513-umuiovrd	165	9	1.10	1.10	CD
cord-272513-umuiovrd	165	10	Virus	Virus	NNP
cord-272513-umuiovrd	165	11	Evolution	Evolution	NNP
cord-272513-umuiovrd	165	12	4	4	CD
cord-272513-umuiovrd	166	1	Is	be	VBZ
cord-272513-umuiovrd	166	2	visiting	visit	VBG
cord-272513-umuiovrd	166	3	Qom	Qom	NNP
cord-272513-umuiovrd	166	4	spread	spread	VBD
cord-272513-umuiovrd	166	5	CoVID-19	CoVID-19	NNP
cord-272513-umuiovrd	166	6	epidemic	epidemic	NN
cord-272513-umuiovrd	166	7	in	in	IN
cord-272513-umuiovrd	166	8	the	the	DT
cord-272513-umuiovrd	166	9	Middle	Middle	NNP
cord-272513-umuiovrd	166	10	East	East	NNP
cord-272513-umuiovrd	166	11	?	?	.
cord-272513-umuiovrd	167	1	The	the	DT
cord-272513-umuiovrd	167	2	authors	author	NNS
cord-272513-umuiovrd	167	3	are	be	VBP
cord-272513-umuiovrd	167	4	grateful	grateful	JJ
cord-272513-umuiovrd	167	5	for	for	IN
cord-272513-umuiovrd	167	6	the	the	DT
cord-272513-umuiovrd	167	7	timely	timely	JJ
cord-272513-umuiovrd	167	8	sequencing	sequencing	NN
cord-272513-umuiovrd	167	9	and	and	CC
cord-272513-umuiovrd	167	10	release	release	NN
cord-272513-umuiovrd	167	11	of	of	IN
cord-272513-umuiovrd	167	12	genomes	genome	NNS
cord-272513-umuiovrd	167	13	to	to	TO
cord-272513-umuiovrd	167	14	make	make	VB
cord-272513-umuiovrd	167	15	this	this	DT
cord-272513-umuiovrd	167	16	study	study	NN
cord-272513-umuiovrd	167	17	possible	possible	JJ
cord-272513-umuiovrd	167	18	and	and	CC
cord-272513-umuiovrd	167	19	to	to	IN
cord-272513-umuiovrd	167	20	Dr.	Dr.	NNP
cord-272513-umuiovrd	167	21	Anusha	Anusha	NNP
cord-272513-umuiovrd	167	22	C	C	NNP
cord-272513-umuiovrd	167	23	P	P	NNP
cord-272513-umuiovrd	167	24	for	for	IN
cord-272513-umuiovrd	167	25	her	-PRON-	PRP$
cord-272513-umuiovrd	167	26	comments	comment	NNS
cord-272513-umuiovrd	167	27	.	.	.
cord-272513-umuiovrd	168	1	This	this	DT
cord-272513-umuiovrd	168	2	research	research	NN
cord-272513-umuiovrd	168	3	received	receive	VBD
cord-272513-umuiovrd	168	4	no	no	DT
cord-272513-umuiovrd	168	5	specific	specific	JJ
cord-272513-umuiovrd	168	6	grant	grant	NN
cord-272513-umuiovrd	168	7	from	from	IN
cord-272513-umuiovrd	168	8	any	any	DT
cord-272513-umuiovrd	168	9	funding	funding	NN
cord-272513-umuiovrd	168	10	agency	agency	NN
cord-272513-umuiovrd	168	11	in	in	IN
cord-272513-umuiovrd	168	12	the	the	DT
cord-272513-umuiovrd	168	13	public	public	NN
cord-272513-umuiovrd	168	14	,	,	,
cord-272513-umuiovrd	168	15	commercial	commercial	JJ
cord-272513-umuiovrd	168	16	,	,	,
cord-272513-umuiovrd	168	17	or	or	CC
cord-272513-umuiovrd	168	18	not	not	RB
cord-272513-umuiovrd	168	19	-	-	HYPH
cord-272513-umuiovrd	168	20	for	for	IN
cord-272513-umuiovrd	168	21	-	-	HYPH
cord-272513-umuiovrd	168	22	profit	profit	NN
cord-272513-umuiovrd	168	23	sectors	sector	NNS
cord-272513-umuiovrd	168	24	.	.	.
cord-272513-umuiovrd	168	25	 	 	_SP
cord-272513-umuiovrd	169	1	Iran	Iran	NNP
cord-272513-umuiovrd	169	2	 	 	_SP
cord-272513-umuiovrd	169	3	EPI_ISL_424349	EPI_ISL_424349	NNP
cord-272513-umuiovrd	169	4	 	 	_SP
cord-272513-umuiovrd	170	1	30	30	CD
cord-272513-umuiovrd	170	2	 	 	_SP
cord-272513-umuiovrd	171	1	Iran	Iran	NNP
cord-272513-umuiovrd	171	2	 	 	_SP
cord-272513-umuiovrd	172	1	EPI_ISL_445088	EPI_ISL_445088	NNP
cord-272513-umuiovrd	172	2	 	 	_SP
cord-272513-umuiovrd	172	3	31	31	CD
cord-272513-umuiovrd	172	4	 	 	_SP
cord-272513-umuiovrd	173	1	Iran	Iran	NNP
cord-272513-umuiovrd	173	2	 	 	_SP
cord-272513-umuiovrd	174	1	EPI_ISL_507007	EPI_ISL_507007	NNP
cord-272513-umuiovrd	174	2	 	 	_SP
cord-272513-umuiovrd	174	3	32	32	CD
cord-272513-umuiovrd	174	4	 	 	_SP
cord-272513-umuiovrd	175	1	Iran	Iran	NNP
cord-272513-umuiovrd	175	2	 	 	_SP
cord-272513-umuiovrd	176	1	EPI_ISL_514753	EPI_ISL_514753	NNP
cord-272513-umuiovrd	176	2	 	 	_SP
cord-272513-umuiovrd	177	1	33	33	CD
cord-272513-umuiovrd	177	2	 	 	_SP
cord-272513-umuiovrd	178	1	Iran	Iran	NNP
cord-272513-umuiovrd	178	2	 	 	_SP
cord-272513-umuiovrd	179	1	EPI_ISL_437512	EPI_ISL_437512	NNP
cord-272513-umuiovrd	179	2	 	 	_SP
cord-272513-umuiovrd	180	1	34	34	CD
cord-272513-umuiovrd	180	2	 	 	_SP
cord-272513-umuiovrd	180	3	Iran	Iran	NNP
cord-272513-umuiovrd	180	4	 	 	_SP
cord-272513-umuiovrd	181	1	EPI_ISL_442044	EPI_ISL_442044	NNP
cord-272513-umuiovrd	181	2	 	 	_SP
cord-272513-umuiovrd	182	1	35	35	CD
cord-272513-umuiovrd	182	2	 	 	_SP
cord-272513-umuiovrd	183	1	Iran	Iran	NNP
cord-272513-umuiovrd	183	2	 	 	_SP
cord-272513-umuiovrd	184	1	EPI_ISL_442523	EPI_ISL_442523	NNP
cord-272513-umuiovrd	184	2	 	 	_SP
cord-272513-umuiovrd	184	3	36	36	CD
cord-272513-umuiovrd	184	4	 	 	_SP
cord-272513-umuiovrd	185	1	Israel	Israel	NNP
cord-272513-umuiovrd	185	2	 	 	_SP
cord-272513-umuiovrd	185	3	EPI_ISL_435291	EPI_ISL_435291	NNP
cord-272513-umuiovrd	185	4	 	 	_SP
cord-272513-umuiovrd	186	1	37	37	CD
cord-272513-umuiovrd	186	2	 	 	_SP
cord-272513-umuiovrd	187	1	Israel	Israel	NNP
cord-272513-umuiovrd	187	2	 	 	_SP
cord-272513-umuiovrd	188	1	EPI_ISL_514303	EPI_ISL_514303	NNP
cord-272513-umuiovrd	188	2	 	 	_SP
cord-272513-umuiovrd	189	1	38	38	CD
cord-272513-umuiovrd	189	2	 	 	_SP
cord-272513-umuiovrd	190	1	Israel	Israel	NNP
cord-272513-umuiovrd	190	2	 	 	_SP
cord-272513-umuiovrd	191	1	EPI_ISL_514305	EPI_ISL_514305	NNP
cord-272513-umuiovrd	191	2	 	 	_SP
cord-272513-umuiovrd	191	3	39	39	CD
cord-272513-umuiovrd	191	4	 	 	_SP
cord-272513-umuiovrd	192	1	Israel	Israel	NNP
cord-272513-umuiovrd	192	2	 	 	_SP
cord-272513-umuiovrd	193	1	EPI_ISL_514302	EPI_ISL_514302	NNP
cord-272513-umuiovrd	193	2	 	 	_SP
cord-272513-umuiovrd	194	1	40	40	CD
cord-272513-umuiovrd	194	2	 	 	_SP
cord-272513-umuiovrd	195	1	Israel	Israel	NNP
cord-272513-umuiovrd	195	2	 	 	_SP
cord-272513-umuiovrd	196	1	EPI_ISL_435286	EPI_ISL_435286	NNP
cord-272513-umuiovrd	196	2	 	 	_SP
cord-272513-umuiovrd	196	3	41	41	CD
cord-272513-umuiovrd	196	4	 	 	_SP
cord-272513-umuiovrd	197	1	Israel	Israel	NNP
cord-272513-umuiovrd	197	2	 	 	_SP
cord-272513-umuiovrd	198	1	EPI_ISL_435289	EPI_ISL_435289	NNP
cord-272513-umuiovrd	198	2	 	 	_SP
cord-272513-umuiovrd	199	1	42	42	CD
cord-272513-umuiovrd	199	2	 	 	_SP
cord-272513-umuiovrd	200	1	Israel	Israel	NNP
cord-272513-umuiovrd	200	2	 	 	_SP
cord-272513-umuiovrd	201	1	EPI_ISL_419211	EPI_ISL_419211	NNP
cord-272513-umuiovrd	201	2	 	 	_SP
cord-272513-umuiovrd	201	3	43	43	CD
cord-272513-umuiovrd	201	4	 	 	_SP
cord-272513-umuiovrd	202	1	Israel	Israel	NNP
cord-272513-umuiovrd	202	2	 	 	_SP
cord-272513-umuiovrd	203	1	EPI_ISL_435284	EPI_ISL_435284	NNP
cord-272513-umuiovrd	203	2	 	 	_SP
cord-272513-umuiovrd	203	3	44	44	CD
cord-272513-umuiovrd	203	4	 	 	_SP
cord-272513-umuiovrd	204	1	Israel	Israel	NNP
cord-272513-umuiovrd	204	2	 	 	_SP
cord-272513-umuiovrd	205	1	EPI_ISL_514306	EPI_ISL_514306	NNP
cord-272513-umuiovrd	205	2	 	 	_SP
cord-272513-umuiovrd	205	3	45	45	CD
cord-272513-umuiovrd	205	4	 	 	_SP
cord-272513-umuiovrd	206	1	Israel	Israel	NNP
cord-272513-umuiovrd	206	2	 	 	_SP
cord-272513-umuiovrd	207	1	EPI_ISL_514301	EPI_ISL_514301	NNP
cord-272513-umuiovrd	207	2	 	 	_SP
cord-272513-umuiovrd	208	1	46	46	CD
cord-272513-umuiovrd	208	2	 	 	_SP
cord-272513-umuiovrd	209	1	Jordan	Jordan	NNP
cord-272513-umuiovrd	209	2	 	 	_SP
cord-272513-umuiovrd	210	1	EPI_ISL_430012	EPI_ISL_430012	NNP
cord-272513-umuiovrd	210	2	 	 	_SP
cord-272513-umuiovrd	211	1	47	47	CD
cord-272513-umuiovrd	212	1	Jordan	Jordan	NNP
cord-272513-umuiovrd	213	1	EPI_ISL_430002	EPI_ISL_430002	NNP
cord-272513-umuiovrd	213	2	SaudiArabia	SaudiArabia	NNP
cord-272513-umuiovrd	213	3	 	 	_SP
cord-272513-umuiovrd	213	4	EPI_ISL_512924	epi_isl_512924	XX
cord-272513-umuiovrd	213	5	 	 	_SP
cord-272513-umuiovrd	214	1	93	93	CD
cord-272513-umuiovrd	214	2	 	 	_SP
cord-272513-umuiovrd	215	1	SaudiArabia	SaudiArabia	NNP
cord-272513-umuiovrd	215	2	 	 	_SP
cord-272513-umuiovrd	216	1	EPI_ISL_512926	EPI_ISL_512926	NNP
cord-272513-umuiovrd	216	2	 	 	_SP
cord-272513-umuiovrd	217	1	94	94	CD
cord-272513-umuiovrd	217	2	 	 	_SP
cord-272513-umuiovrd	218	1	SaudiArabia	SaudiArabia	NNP
cord-272513-umuiovrd	218	2	 	 	_SP
cord-272513-umuiovrd	219	1	EPI_ISL_489996	EPI_ISL_489996	NNP
cord-272513-umuiovrd	219	2	 	 	_SP
cord-272513-umuiovrd	220	1	95	95	CD
cord-272513-umuiovrd	220	2	 	 	_SP
cord-272513-umuiovrd	221	1	SaudiArabia	SaudiArabia	NNP
cord-272513-umuiovrd	221	2	 	 	_SP
cord-272513-umuiovrd	222	1	EPI_ISL_489998	EPI_ISL_489998	NNP
cord-272513-umuiovrd	222	2	 	 	_SP
cord-272513-umuiovrd	223	1	96	96	CD
cord-272513-umuiovrd	223	2	 	 	_SP
cord-272513-umuiovrd	224	1	SaudiArabia	SaudiArabia	NNP
cord-272513-umuiovrd	224	2	 	 	_SP
cord-272513-umuiovrd	225	1	EPI_ISL_490000	EPI_ISL_490000	NNP
cord-272513-umuiovrd	225	2	 	 	_SP
cord-272513-umuiovrd	226	1	97	97	CD
cord-272513-umuiovrd	226	2	 	 	_SP
cord-272513-umuiovrd	227	1	SaudiArabia	SaudiArabia	NNP
cord-272513-umuiovrd	227	2	 	 	_SP
cord-272513-umuiovrd	228	1	EPI_ISL_489999	EPI_ISL_489999	NNP
cord-272513-umuiovrd	228	2	 	 	_SP
cord-272513-umuiovrd	229	1	98	98	CD
cord-272513-umuiovrd	229	2	 	 	_SP
cord-272513-umuiovrd	230	1	SaudiArabia	SaudiArabia	NNP
cord-272513-umuiovrd	230	2	 	 	_SP
cord-272513-umuiovrd	231	1	EPI_ISL_489997	EPI_ISL_489997	VBN
cord-272513-umuiovrd	231	2	 	 	_SP
cord-272513-umuiovrd	232	1	99	99	CD
cord-272513-umuiovrd	232	2	 	 	_SP
cord-272513-umuiovrd	233	1	SaudiArabia	SaudiArabia	NNP
cord-272513-umuiovrd	233	2	 	 	_SP
cord-272513-umuiovrd	233	3	EPI_ISL_512927	EPI_ISL_512927	NNS
cord-272513-umuiovrd	233	4	  	  	_SP
cord-272513-umuiovrd	234	1	100	100	CD
cord-272513-umuiovrd	234	2	  	  	_SP
cord-272513-umuiovrd	235	1	SaudiArabia	SaudiArabia	NNP
cord-272513-umuiovrd	235	2	 	 	_SP
cord-272513-umuiovrd	236	1	EPI_ISL_512922	EPI_ISL_512922	NNP
cord-272513-umuiovrd	236	2	 	 	_SP
cord-272513-umuiovrd	237	1	101	101	CD
cord-272513-umuiovrd	237	2	 	 	_SP
cord-272513-umuiovrd	238	1	SaudiArabia	SaudiArabia	NNP
cord-272513-umuiovrd	238	2	 	 	_SP
cord-272513-umuiovrd	239	1	EPI_ISL_512923	EPI_ISL_512923	NNP
cord-272513-umuiovrd	239	2	 	 	_SP
cord-272513-umuiovrd	240	1	102	102	CD
cord-272513-umuiovrd	240	2	 	 	_SP
cord-272513-umuiovrd	241	1	Turkey	Turkey	NNP
cord-272513-umuiovrd	241	2	 	 	_SP
cord-272513-umuiovrd	241	3	EPI_ISL_495421	EPI_ISL_495421	NNS
cord-272513-umuiovrd	241	4	 	 	_SP
cord-272513-umuiovrd	242	1	103	103	CD
cord-272513-umuiovrd	242	2	 	 	_SP
cord-272513-umuiovrd	243	1	Turkey	Turkey	NNP
cord-272513-umuiovrd	243	2	 	 	_SP
cord-272513-umuiovrd	244	1	EPI_ISL_495445	EPI_ISL_495445	NNP
cord-272513-umuiovrd	244	2	 	 	_SP
cord-272513-umuiovrd	244	3	104	104	CD
cord-272513-umuiovrd	244	4	 	 	_SP
cord-272513-umuiovrd	245	1	Turkey	Turkey	NNP
cord-272513-umuiovrd	245	2	 	 	_SP
cord-272513-umuiovrd	246	1	EPI_ISL_495433	EPI_ISL_495433	NNP
cord-272513-umuiovrd	246	2	 	 	_SP
cord-272513-umuiovrd	247	1	105	105	CD
cord-272513-umuiovrd	247	2	 	 	_SP
cord-272513-umuiovrd	248	1	Turkey	Turkey	NNP
cord-272513-umuiovrd	248	2	 	 	_SP
cord-272513-umuiovrd	248	3	EPI_ISL_429868	EPI_ISL_429868	NNP
cord-272513-umuiovrd	248	4	 	 	_SP
cord-272513-umuiovrd	249	1	106	106	CD
cord-272513-umuiovrd	249	2	 	 	_SP
cord-272513-umuiovrd	250	1	Turkey	Turkey	NNP
cord-272513-umuiovrd	250	2	 	 	_SP
cord-272513-umuiovrd	251	1	EPI_ISL_429867	EPI_ISL_429867	NNP
cord-272513-umuiovrd	251	2	 	 	_SP
cord-272513-umuiovrd	252	1	107	107	CD
cord-272513-umuiovrd	252	2	 	 	_SP
cord-272513-umuiovrd	253	1	Turkey	Turkey	NNP
cord-272513-umuiovrd	253	2	 	 	_SP
cord-272513-umuiovrd	253	3	EPI_ISL_429866	EPI_ISL_429866	NNP
cord-272513-umuiovrd	253	4	 	 	_SP
cord-272513-umuiovrd	254	1	108	108	CD
cord-272513-umuiovrd	254	2	 	 	_SP
cord-272513-umuiovrd	255	1	Turkey	Turkey	NNP
cord-272513-umuiovrd	255	2	 	 	_SP
cord-272513-umuiovrd	256	1	EPI_ISL_428712	EPI_ISL_428712	NNP
cord-272513-umuiovrd	256	2	 	 	_SP
cord-272513-umuiovrd	257	1	109	109	CD
cord-272513-umuiovrd	257	2	 	 	_SP
cord-272513-umuiovrd	258	1	Turkey	Turkey	NNP
cord-272513-umuiovrd	258	2	 	 	_SP
cord-272513-umuiovrd	259	1	EPI_ISL_495436	EPI_ISL_495436	NNP
cord-272513-umuiovrd	259	2	 	 	_SP
cord-272513-umuiovrd	260	1	110	110	CD
cord-272513-umuiovrd	260	2	 	 	_SP
cord-272513-umuiovrd	261	1	Turkey	Turkey	NNP
cord-272513-umuiovrd	261	2	 	 	_SP
cord-272513-umuiovrd	262	1	EPI_ISL_495429	EPI_ISL_495429	NNP
cord-272513-umuiovrd	262	2	 	 	_SP
cord-272513-umuiovrd	263	1	111	111	CD
cord-272513-umuiovrd	263	2	 	 	_SP
cord-272513-umuiovrd	264	1	Turkey	Turkey	NNP
cord-272513-umuiovrd	264	2	 	 	_SP
cord-272513-umuiovrd	265	1	EPI_ISL_424366	EPI_ISL_424366	NNP
cord-272513-umuiovrd	265	2	 	 	_SP
cord-272513-umuiovrd	266	1	112	112	CD
cord-272513-umuiovrd	266	2	 	 	_SP
cord-272513-umuiovrd	266	3	UnitedArabEmirates	UnitedArabEmirates	NNP
cord-272513-umuiovrd	266	4	 	 	_SP
cord-272513-umuiovrd	267	1	EPI_ISL_469277	EPI_ISL_469277	NNP
cord-272513-umuiovrd	267	2	 	 	_SP
cord-272513-umuiovrd	268	1	113	113	CD
cord-272513-umuiovrd	268	2	 	 	_SP
cord-272513-umuiovrd	269	1	UnitedArabEmirates	UnitedArabEmirates	NNP
cord-272513-umuiovrd	269	2	 	 	_SP
cord-272513-umuiovrd	270	1	EPI_ISL_469279	EPI_ISL_469279	NNP
cord-272513-umuiovrd	270	2	 	 	_SP
cord-272513-umuiovrd	271	1	114	114	CD
cord-272513-umuiovrd	271	2	 	 	_SP
cord-272513-umuiovrd	271	3	UnitedArabEmirates	UnitedArabEmirates	NNP
cord-272513-umuiovrd	271	4	 	 	_SP
cord-272513-umuiovrd	272	1	EPI_ISL_435126	EPI_ISL_435126	NNP
cord-272513-umuiovrd	272	2	 	 	_SP
cord-272513-umuiovrd	273	1	115	115	CD
cord-272513-umuiovrd	273	2	 	 	_SP
cord-272513-umuiovrd	273	3	UnitedArabEmirates	UnitedArabEmirates	NNP
cord-272513-umuiovrd	273	4	 	 	_SP
cord-272513-umuiovrd	274	1	EPI_ISL_435121	EPI_ISL_435121	NNP
cord-272513-umuiovrd	274	2	 	 	_SP
cord-272513-umuiovrd	275	1	116	116	CD
cord-272513-umuiovrd	275	2	 	 	_SP
cord-272513-umuiovrd	275	3	UnitedArabEmirates	UnitedArabEmirates	NNP
cord-272513-umuiovrd	275	4	 	 	_SP
cord-272513-umuiovrd	276	1	EPI_ISL_435131	EPI_ISL_435131	NNP
cord-272513-umuiovrd	276	2	 	 	_SP
cord-272513-umuiovrd	277	1	117	117	CD
cord-272513-umuiovrd	277	2	 	 	_SP
cord-272513-umuiovrd	277	3	UnitedArabEmirates	UnitedArabEmirates	NNP
cord-272513-umuiovrd	277	4	 	 	_SP
cord-272513-umuiovrd	278	1	EPI_ISL_463740	EPI_ISL_463740	NNP
cord-272513-umuiovrd	278	2	 	 	_SP
cord-272513-umuiovrd	279	1	118	118	CD
cord-272513-umuiovrd	279	2	 	 	_SP
cord-272513-umuiovrd	280	1	UnitedArabEmirates	UnitedArabEmirates	NNP
cord-272513-umuiovrd	280	2	 	 	_SP
cord-272513-umuiovrd	281	1	EPI_ISL_469281	EPI_ISL_469281	NNP
cord-272513-umuiovrd	281	2	 	 	_SP
cord-272513-umuiovrd	282	1	119	119	CD
cord-272513-umuiovrd	282	2	 	 	_SP
cord-272513-umuiovrd	282	3	UnitedArabEmirates	UnitedArabEmirates	NNP
cord-272513-umuiovrd	282	4	 	 	_SP
cord-272513-umuiovrd	283	1	EPI_ISL_469280	EPI_ISL_469280	NNP
cord-272513-umuiovrd	283	2	 	 	_SP
cord-272513-umuiovrd	284	1	120	120	CD
cord-272513-umuiovrd	284	2	 	 	_SP
cord-272513-umuiovrd	284	3	UnitedArabEmirates	UnitedArabEmirates	NNP
cord-272513-umuiovrd	284	4	 	 	_SP
cord-272513-umuiovrd	284	5	EPI_ISL_435137	EPI_ISL_435137	NNP
cord-272513-umuiovrd	284	6	 	 	_SP
cord-272513-umuiovrd	285	1	121	121	CD
cord-272513-umuiovrd	285	2	 	 	_SP
cord-272513-umuiovrd	285	3	UnitedArabEmirates	UnitedArabEmirates	NNP
cord-272513-umuiovrd	285	4	 	 	_SP
cord-272513-umuiovrd	286	1	EPI_ISL_435134	EPI_ISL_435134	NNP
cord-272513-umuiovrd	286	2	 	 	_SP
cord-272513-umuiovrd	287	1	122	122	CD
cord-272513-umuiovrd	287	2	 	 	_SP
cord-272513-umuiovrd	288	1	Wuhan	Wuhan	NNP
cord-272513-umuiovrd	288	2	 	 	_SP
cord-272513-umuiovrd	288	3	EPI_ISL_402123	EPI_ISL_402123	NNS
cord-272513-umuiovrd	288	4	 	 	_SP
cord-272513-umuiovrd	289	1	123	123	CD
cord-272513-umuiovrd	289	2	 	 	_SP
cord-272513-umuiovrd	290	1	Wuhan	Wuhan	NNP
cord-272513-umuiovrd	290	2	 	 	_SP
cord-272513-umuiovrd	291	1	EPI_ISL_454949	EPI_ISL_454949	NNP
cord-272513-umuiovrd	291	2	 	 	_SP
cord-272513-umuiovrd	292	1	124	124	CD
cord-272513-umuiovrd	292	2	 	 	_SP
cord-272513-umuiovrd	293	1	Wuhan	Wuhan	NNP
cord-272513-umuiovrd	293	2	 	 	_SP
cord-272513-umuiovrd	294	1	EPI_ISL_454948	EPI_ISL_454948	NNP
cord-272513-umuiovrd	294	2	 	 	_SP
cord-272513-umuiovrd	295	1	125	125	CD
cord-272513-umuiovrd	295	2	 	 	_SP
cord-272513-umuiovrd	296	1	Wuhan	Wuhan	NNP
cord-272513-umuiovrd	296	2	 	 	_SP
cord-272513-umuiovrd	297	1	EPI_ISL_406798	EPI_ISL_406798	NNP
cord-272513-umuiovrd	297	2	 	 	_SP
cord-272513-umuiovrd	298	1	126	126	CD
cord-272513-umuiovrd	298	2	 	 	_SP
cord-272513-umuiovrd	299	1	Wuhan	Wuhan	NNP
cord-272513-umuiovrd	299	2	 	 	_SP
cord-272513-umuiovrd	300	1	EPI_ISL_454951	EPI_ISL_454951	NNP
cord-272513-umuiovrd	300	2	 	 	_SP
cord-272513-umuiovrd	300	3	127	127	CD
cord-272513-umuiovrd	300	4	Wuhan	Wuhan	NNP
cord-272513-umuiovrd	300	5	EPI_ISL_403931	EPI_ISL_403931	NNP
cord-272513-umuiovrd	300	6	Table	Table	NNP
cord-272513-umuiovrd	300	7	3	3	CD
cord-272513-umuiovrd	301	1	:	:	:
cord-272513-umuiovrd	301	2	Catalogue	catalogue	NN
cord-272513-umuiovrd	301	3	of	of	IN
cord-272513-umuiovrd	301	4	sample	sample	NN
cord-272513-umuiovrd	301	5	accession	accession	NN
cord-272513-umuiovrd	301	6	ID	ID	NNP
cord-272513-umuiovrd	301	7	by	by	IN
cord-272513-umuiovrd	301	8	country	country	NN
cord-272513-umuiovrd	301	9	.	.	.