Carrel name: keyword-iran-cord Creating study carrel named keyword-iran-cord Initializing database file: cache/cord-005508-6zlqny9m.json key: cord-005508-6zlqny9m authors: Azadmanjir, Zahra; Jazayeri, Seyed Behzad; Habibi Arejan, Roya; Ghodsi, Zahra; Sharif-Alhoseini, Mahdi; Kheiri, Ghazaleh; Zendehdel, Kazem; Safdarian, Mahdi; Sadeghian, Farideh; Khazaeipour, Zahra; Naghdi, Khatereh; Arab Kheradmand, Jalil; Saadat, Soheil; Pirnejad, Habibollah; Fazel, Mohammad Reza; Fakharian, Esmail; Mohammadzadeh, Mahdi; Sadeghi-Naini, Mohsen; Saberi, Houshang; Derakhshan, Pegah; Sabour, Hadis; Benzel, Edward C.; Oreilly, Gerard; Noonan, Vanessa; Vaccaro, Alexander R.; Emami-Razavi, Seyed Hassan; Rahimi-Movaghar, Vafa title: The data set development for the National Spinal Cord Injury Registry of Iran (NSCIR-IR): progress toward improving the quality of care date: 2020-03-24 journal: Spinal Cord Ser Cases DOI: 10.1038/s41394-020-0265-x sha: doc_id: 5508 cord_uid: 6zlqny9m file: cache/cord-265682-yac7kzaf.json key: cord-265682-yac7kzaf authors: Eden, John-Sebastian; Rockett, Rebecca; Carter, Ian; Rahman, Hossinur; de Ligt, Joep; Hadfield, James; Storey, Matthew; Ren, Xiaoyun; Tulloch, Rachel; Basile, Kerri; Wells, Jessica; Byun, Roy; Gilroy, Nicky; O’Sullivan, Matthew V; Sintchenko, Vitali; Chen, Sharon C; Maddocks, Susan; Sorrell, Tania C; Holmes, Edward C; Dwyer, Dominic E; Kok, Jen title: An emergent clade of SARS-CoV-2 linked to returned travellers from Iran date: 2020-04-10 journal: Virus Evol DOI: 10.1093/ve/veaa027 sha: doc_id: 265682 cord_uid: yac7kzaf file: cache/cord-005279-w69ao8ic.json key: cord-005279-w69ao8ic authors: Bahrami, Somayeh; Alborzi, Ali Reza title: Prevalence of subclinical coccidiosis in river buffalo calves of southwest of Iran date: 2013-12-13 journal: Acta Parasitol DOI: 10.2478/s11686-013-0167-1 sha: doc_id: 5279 cord_uid: w69ao8ic file: cache/cord-004110-xc8vv9x8.json key: cord-004110-xc8vv9x8 authors: Eslahi, Aida Vafae; Badri, Milad; Khorshidi, Ali; Majidiani, Hamidreza; Hooshmand, Elham; Hosseini, Hamid; Taghipour, Ali; Foroutan, Masoud; Pestehchian, Nader; Firoozeh, Farzaneh; Riahi, Seyed Mohammad; Zibaei, Mohammad title: Prevalence of Toxocara and Toxascaris infection among human and animals in Iran with meta-analysis approach date: 2020-01-07 journal: BMC Infect Dis DOI: 10.1186/s12879-020-4759-8 sha: doc_id: 4110 cord_uid: xc8vv9x8 file: cache/cord-257099-8k28vkgf.json key: cord-257099-8k28vkgf authors: Fan, Jingchun; Liu, Xiaodong; Shao, Guojun; Qi, Junpin; Li, Yi; Pan, Weimin; Hambly, Brett D.; Bao, Shisan title: The epidemiology of reverse transmission of COVID-19 in Gansu Province, China date: 2020-05-12 journal: Travel Med Infect Dis DOI: 10.1016/j.tmaid.2020.101741 sha: doc_id: 257099 cord_uid: 8k28vkgf file: cache/cord-103711-tnw82hbm.json key: cord-103711-tnw82hbm authors: Einian, Majid; Tabarraei, Hamid Reza title: Modeling of COVID-19 Pandemic and Scenarios for Containment date: 2020-03-30 journal: nan DOI: 10.1101/2020.03.27.20045849 sha: doc_id: 103711 cord_uid: tnw82hbm file: cache/cord-004041-2b2h1xog.json key: cord-004041-2b2h1xog authors: Rezaei, Fatemeh; Maracy, Mohammad R; Yarmohammadian, Mohammad H; Ardalan, Ali; Keyvanara, Mahmood title: Preparedness of community-based organisations in biohazard: reliability and validity of an assessment tool date: 2019-06-27 journal: Fam Med Community Health DOI: 10.1136/fmch-2019-000124 sha: doc_id: 4041 cord_uid: 2b2h1xog file: cache/cord-248932-i1v2lyd2.json key: cord-248932-i1v2lyd2 authors: Madraki, Golshan; Grasso, Isabella; Otala, Jacqueline; Liu, Yu; Matthews, Jeanna title: Characterizing and Comparing COVID-19 Misinformation Across Languages, Countries and Platforms date: 2020-10-13 journal: nan DOI: nan sha: doc_id: 248932 cord_uid: i1v2lyd2 file: cache/cord-032716-i6hfj8ca.json key: cord-032716-i6hfj8ca authors: Hufbauer, Gary Clyde; Jung, Euijin title: What's new in economic sanctions? date: 2020-09-25 journal: Eur Econ Rev DOI: 10.1016/j.euroecorev.2020.103572 sha: doc_id: 32716 cord_uid: i6hfj8ca file: cache/cord-255560-c8s9f12f.json key: cord-255560-c8s9f12f authors: Arab-Mazar, Zahra; Sah, Ranjit; Rabaan, Ali A.; Dhama, Kuldeep; Rodriguez-Morales, Alfonso J. title: Mapping the incidence of the COVID-19 hotspot in Iran – Implications for Travellers date: 2020-03-14 journal: Travel Med Infect Dis DOI: 10.1016/j.tmaid.2020.101630 sha: doc_id: 255560 cord_uid: c8s9f12f file: cache/cord-269679-dfma5kqc.json key: cord-269679-dfma5kqc authors: Badshah, Syed Lal; Ullah, Asad; Badshah, Syed Hilal; Ahmad, Irshad title: Spread of Novel Coronavirus by Returning Pilgrims from Iran to Pakistan date: 2020-04-09 journal: J Travel Med DOI: 10.1093/jtm/taaa044 sha: doc_id: 269679 cord_uid: dfma5kqc file: cache/cord-263518-6puccigu.json key: cord-263518-6puccigu authors: Maarefvand, Masoomeh; Hosseinzadeh, Samaneh; Farmani, Ozra; Safarabadi Farahani, Atefeh; Khubchandani, Jagdish title: Coronavirus Outbreak and Stress in Iranians date: 2020-06-20 journal: Int J Environ Res Public Health DOI: 10.3390/ijerph17124441 sha: doc_id: 263518 cord_uid: 6puccigu file: cache/cord-276583-j8bf0eme.json key: cord-276583-j8bf0eme authors: Ghalyanchi Langeroudi, Arash; Karimi, Vahid; Tavasoti Kheiri, Masoumeh; Barin, Abbas title: Full-length characterization and phylogenetic analysis of hemagglutinin gene of H9N2 virus isolated from broilers in Iran during 1998–2007 date: 2012-01-21 journal: Comp Clin Path DOI: 10.1007/s00580-012-1405-x sha: doc_id: 276583 cord_uid: j8bf0eme file: cache/cord-294690-fpjhkb4g.json key: cord-294690-fpjhkb4g authors: Sharifi, Hamid; Jahani, Yunes; Mirzazadeh, Ali; Ahmadi Gohari, Milad; Nakhaeizadeh, Mehran; Shokoohi, Mostafa; Eybpoosh, Sana; Tohidinik, Hamid Reza; Mostafavi, Ehsan; Khalili, Davood; Hashemi Nazari, Seyed Saeed; Karamouzian, Mohammad; Haghdoost, Ali Akbar title: Estimating the number of COVID-19-related infections, deaths and hospitalizations in Iran under different physical distancing and isolation scenarios: A compartmental mathematical modeling date: 2020-04-25 journal: nan DOI: 10.1101/2020.04.22.20075440 sha: doc_id: 294690 cord_uid: fpjhkb4g file: cache/cord-313286-nqvuas3p.json key: cord-313286-nqvuas3p authors: Afshar Jahanshahi, A.; Mokhtari Dinani, M.; Nazarian Madavani, A.; Li, J.; Zhang, S. X. title: The distress of Iranian adults during the Covid-19 pandemic - More distressed than the Chinese and with different predictors date: 2020-04-07 journal: nan DOI: 10.1101/2020.04.03.20052571 sha: doc_id: 313286 cord_uid: nqvuas3p file: cache/cord-271679-94h6rcih.json key: cord-271679-94h6rcih authors: Sharififar, Simintaj; Jahangiri, Katayoun; Zareiyan, Armin; Khoshvaghti, Amir title: Factors affecting hospital response in biological disasters: A qualitative study date: 2020-03-16 journal: Med J Islam Repub Iran DOI: 10.34171/mjiri.34.21 sha: doc_id: 271679 cord_uid: 94h6rcih file: cache/cord-312784-ykko0al5.json key: cord-312784-ykko0al5 authors: Takian, Amirhossein; Raoofi, Azam; Kazempour-Ardebili, Sara title: COVID-19 battle during the toughest sanctions against Iran date: 2020-03-18 journal: Lancet DOI: 10.1016/s0140-6736(20)30668-1 sha: doc_id: 312784 cord_uid: ykko0al5 file: cache/cord-283133-jspfwuqu.json key: cord-283133-jspfwuqu authors: Farangi, Mostafa; Asl Soleimani, Ebrahim; Zahedifar, Mostafa; Amiri, Omid; Poursafar, Jafar title: The environmental and economic analysis of grid-connected photovoltaic power systems with silicon solar panels, in accord with the new energy policy in Iran date: 2020-07-01 journal: Energy (Oxf) DOI: 10.1016/j.energy.2020.117771 sha: doc_id: 283133 cord_uid: jspfwuqu file: cache/cord-322796-ojfrvtuy.json key: cord-322796-ojfrvtuy authors: Bagheri, S. H. R.; Asghari, A. M.; Farhadi, M.; Shamshiri, A. R.; Kabir, A.; Kamrava, S. K.; Jalessi, M.; Mohebbi, A.; Alizadeh, R.; Honarmand, A. A.; Ghalehbaghi, B.; Salimi, A. title: Coincidence of COVID-19 epidemic and olfactory dysfunction outbreak date: 2020-03-27 journal: nan DOI: 10.1101/2020.03.23.20041889 sha: doc_id: 322796 cord_uid: ojfrvtuy file: cache/cord-306925-yt5cscf1.json key: cord-306925-yt5cscf1 authors: Haji-Abdolvahab, Habibbolah; Ghalyanchilangeroudi, Arah; Bahonar, Alireza; Ghafouri, Seyed Ali; Vasfi Marandi, Mehdi; Mehrabadi, Mohammad Hosein Fallah; Tehrani, Farshad title: Prevalence of avian influenza, Newcastle disease, and infectious bronchitis viruses in broiler flocks infected with multifactorial respiratory diseases in Iran, 2015–2016 date: 2018-10-30 journal: Trop Anim Health Prod DOI: 10.1007/s11250-018-1743-z sha: doc_id: 306925 cord_uid: yt5cscf1 file: cache/cord-301720-majpfxqn.json key: cord-301720-majpfxqn authors: Saadat, Yousef; Bozorgmehri Fard, Mohammad Hassan; Charkhkar, Saied; Hosseini, Hossein; Shaikhi, Nariman; Akbarpour, Bijan title: Molecular characterization of infectious bronchitis viruses isolated from broiler flocks in Bushehr province, Iran: 2014 - 2015 date: 2017-09-15 journal: Vet Res Forum DOI: nan sha: doc_id: 301720 cord_uid: majpfxqn file: cache/cord-272828-13i2y9kc.json key: cord-272828-13i2y9kc authors: Bagheri, Seyed Hamidreza; Asghari, Alimohamad; Farhadi, Mohammad; Shamshiri, Ahmad Reza; Kabir, Ali; Kamrava, Seyed Kamran; Jalessi, Maryam; Mohebbi, Alireza; Alizadeh, Rafieh; Honarmand, Ali Asghar; Ghalehbaghi, Babak; Salimi, Alireza; Dehghani Firouzabadi, Fatemeh title: Coincidence of COVID-19 epidemic and olfactory dysfunction outbreak in Iran date: 2020-06-15 journal: Med J Islam Repub Iran DOI: 10.34171/mjiri.34.62 sha: doc_id: 272828 cord_uid: 13i2y9kc file: cache/cord-311495-svgw59ic.json key: cord-311495-svgw59ic authors: Ayati, Nayyereh; Saiyarsarai, Parisa; Nikfar, Shekoufeh title: Short and long term impacts of COVID-19 on the pharmaceutical sector date: 2020-07-03 journal: Daru DOI: 10.1007/s40199-020-00358-5 sha: doc_id: 311495 cord_uid: svgw59ic file: cache/cord-337000-k1qq4qgg.json key: cord-337000-k1qq4qgg authors: Sahafizadeh, Ebrahim; Sartoli, Samaneh title: Epidemic curve and reproduction number of COVID-19 in Iran date: 2020-05-18 journal: J Travel Med DOI: 10.1093/jtm/taaa077 sha: doc_id: 337000 cord_uid: k1qq4qgg file: cache/cord-318043-1x3dp1vv.json key: cord-318043-1x3dp1vv authors: Ahmadi, Mohsen; Sharifi, Abbas; Dorosti, Shadi; Ghoushchi, Saeid Jafarzadeh; Ghanbari, Negar title: Investigation of effective climatology parameters on COVID-19 outbreak in Iran date: 2020-04-17 journal: Sci Total Environ DOI: 10.1016/j.scitotenv.2020.138705 sha: doc_id: 318043 cord_uid: 1x3dp1vv file: cache/cord-336192-5uxq5xrs.json key: cord-336192-5uxq5xrs authors: Alavi, Maryam; Moghanibashi-Mansourieh, Amir; Radfar, Seyed Ramin; Alizadeh, Sepideh; Bahramabadian, Fatemeh; Esmizade, Sara; Dore, Gregory J.; Sedeh, Farid Barati; Deilamizade, Abbas title: Coordination, cooperation, and creativity within harm reduction networks in Iran: COVID-19 prevention and control among people who use drugs date: 2020-08-17 journal: Int J Drug Policy DOI: 10.1016/j.drugpo.2020.102908 sha: doc_id: 336192 cord_uid: 5uxq5xrs file: cache/cord-340132-t77pab71.json key: cord-340132-t77pab71 authors: Mohammadzadeh, Nima; Shahriary, Mahla; Nasri, Erfan title: Iran’s success in controlling the COVID-19 pandemic date: 2020-04-23 journal: Infection control and hospital epidemiology DOI: 10.1017/ice.2020.169 sha: doc_id: 340132 cord_uid: t77pab71 file: cache/cord-353976-gns5omyb.json key: cord-353976-gns5omyb authors: Kafieh, Rahele; Arian, Roya; Saeedizadeh, Narges; Minaee, Shervin; amini, zahra; Kumar Yadav, Sunil; Vaezi, Atefeh; Rezaei, Nima; Haghjooy Javanmard, Shaghayegh title: COVID-19 in Iran: A Deeper Look Into The Future date: 2020-04-27 journal: nan DOI: 10.1101/2020.04.24.20078477 sha: doc_id: 353976 cord_uid: gns5omyb file: cache/cord-315925-hnvf634e.json key: cord-315925-hnvf634e authors: Bandarian, Fatemeh; Namazi, Nazli; Amini, Mohammad Reza; Pajouhi, Mohammad; Mehrdad, Neda; Larijani, Bagher title: Endocrinology and Metabolism Research Institute from inception to maturity: an overview of 25-year activity date: 2020-10-03 journal: J Diabetes Metab Disord DOI: 10.1007/s40200-020-00645-7 sha: doc_id: 315925 cord_uid: hnvf634e file: cache/cord-339235-8xslz4bs.json key: cord-339235-8xslz4bs authors: Boroomand, Zahra; Jafari, Ramezan Ali; Mayahi, Mansour title: Molecular detection and phylogenetic properties of isolated infectious bronchitis viruses from broilers in Ahvaz, southwest Iran, based on partial sequences of spike gene date: 2018-09-15 journal: Vet Res Forum DOI: 10.30466/vrf.2018.32089 sha: doc_id: 339235 cord_uid: 8xslz4bs file: cache/cord-313904-745u0si8.json key: cord-313904-745u0si8 authors: Salimi, Rasoul; Gomar, Reza; Heshmati, Bahram title: The COVID-19 outbreak in Iran date: 2020-06-11 journal: Journal of global health DOI: 10.7189/jogh.10.010365 sha: doc_id: 313904 cord_uid: 745u0si8 file: cache/cord-342517-bzmhjvr5.json key: cord-342517-bzmhjvr5 authors: Rassouli, Maryam; Ashrafizadeh, Hadis; Shirinabadi Farahani, Azam; Akbari, Mohammad Esmaeil title: COVID-19 Management in Iran as One of the Most Affected Countries in the World: Advantages and Weaknesses date: 2020-09-15 journal: Front Public Health DOI: 10.3389/fpubh.2020.00510 sha: doc_id: 342517 cord_uid: bzmhjvr5 file: cache/cord-331701-izkz1hz4.json key: cord-331701-izkz1hz4 authors: Eden, John-Sebastian; Rockett, Rebecca; Carter, Ian; Rahman, Hossinur; de Ligt, Joep; Hadfield, James; Storey, Matthew; Ren, Xiaoyun; Tulloch, Rachel; Basile, Kerri; Wells, Jessica; Byun, Roy; Gilroy, Nicky; O’Sullivan, Matthew V; Sintchenko, Vitali; Chen, Sharon C; Maddocks, Susan; Sorrell, Tania C; Holmes, Edward C; Dwyer, Dominic E; Kok, Jen title: An emergent clade of SARS-CoV-2 linked to returned travellers from Iran date: 2020-03-17 journal: bioRxiv DOI: 10.1101/2020.03.15.992818 sha: doc_id: 331701 cord_uid: izkz1hz4 file: cache/cord-309762-p266f3el.json key: cord-309762-p266f3el authors: Ahmady, Soleiman; Shahbazi, Sara; Heidari, Mohammad title: Transition to Virtual Learning During the Coronavirus Disease–2019 Crisis in Iran: Opportunity Or Challenge? date: 2020-05-07 journal: Disaster medicine and public health preparedness DOI: 10.1017/dmp.2020.142 sha: doc_id: 309762 cord_uid: p266f3el file: cache/cord-320895-y6pzrbdi.json key: cord-320895-y6pzrbdi authors: Arab-Zozani, Morteza; Ghoddoosi-Nejad, Djavad title: COVID-19 in Iran: the Good, the Bad, and the Ugly Strategies for Preparedness – A Report From the Field date: 2020-09-27 journal: Disaster medicine and public health preparedness DOI: 10.1017/dmp.2020.261 sha: doc_id: 320895 cord_uid: y6pzrbdi file: cache/cord-347353-ll2pnl81.json key: cord-347353-ll2pnl81 authors: Saberi, M.; Hamedmoghadam, H.; Madani, K.; Dolk, H. D.; Morgan, A.; Morris, J. K.; Khoshnood, K.; Khoshnood, B. title: Accounting for underreporting in mathematical modelling of transmission and control of COVID-19 in Iran date: 2020-05-06 journal: nan DOI: 10.1101/2020.05.02.20087270 sha: doc_id: 347353 cord_uid: ll2pnl81 file: cache/cord-303331-xolksoy3.json key: cord-303331-xolksoy3 authors: Pourghasemi, Hamid Reza; Pouyan, Soheila; Farajzadeh, Zakariya; Sadhasivam, Nitheshnirmal; Heidari, Bahram; Babaei, Sedigheh; Tiefenbacher, John P. title: Assessment of the outbreak risk, mapping and infection behavior of COVID-19: Application of the autoregressive integrated-moving average (ARIMA) and polynomial models date: 2020-07-28 journal: PLoS One DOI: 10.1371/journal.pone.0236238 sha: doc_id: 303331 cord_uid: xolksoy3 file: cache/cord-269818-ko14wjf7.json key: cord-269818-ko14wjf7 authors: Omidi, Mona; Maher, Ali; Etesaminia, Samira title: Lessons to be learned from the prevalence of COVID-19 in Iran date: 2020-05-28 journal: Med J Islam Repub Iran DOI: 10.34171/mjiri.34.54 sha: doc_id: 269818 cord_uid: ko14wjf7 file: cache/cord-328930-5a0z1ryz.json key: cord-328930-5a0z1ryz authors: Karatayev, Marat; Hall, Stephen title: Establishing and comparing energy security trends in resource-rich exporting nations (Russia and the Caspian Sea region) date: 2020-10-31 journal: Resources Policy DOI: 10.1016/j.resourpol.2020.101746 sha: doc_id: 328930 cord_uid: 5a0z1ryz file: cache/cord-356117-ksfcc8x8.json key: cord-356117-ksfcc8x8 authors: Asadi‐Pooya, Ali A.; Farazdaghi, Mohsen; Bazrafshan, Mehdi title: Impacts of the COVID‐19 pandemic on Iranian patients with epilepsy date: 2020-07-06 journal: Acta Neurol Scand DOI: 10.1111/ane.13310 sha: doc_id: 356117 cord_uid: ksfcc8x8 file: cache/cord-351941-fgtatt40.json key: cord-351941-fgtatt40 authors: Ghaffarzadegan, Navid; Rahmandad, Hazhir title: Simulation‐based estimation of the early spread of COVID‐19 in Iran: actual versus confirmed cases date: 2020-07-06 journal: Syst Dyn Rev DOI: 10.1002/sdr.1655 sha: doc_id: 351941 cord_uid: fgtatt40 file: cache/cord-348111-fkjmzpuw.json key: cord-348111-fkjmzpuw authors: Pishgar, Elahe; Mohammadi, Alireza; Bagheri, Nasser; Kiani, Behzad title: A spatio-temporal geodatabase of mortalities due to respiratory tract diseases in Tehran, Iran between 2008 and 2018: a data note date: 2020-10-07 journal: BMC Res Notes DOI: 10.1186/s13104-020-05319-4 sha: doc_id: 348111 cord_uid: fkjmzpuw file: cache/cord-270614-4q7itegc.json key: cord-270614-4q7itegc authors: Bisaillon, Laura; Khosravi, Mehdi; Jahandoost, Bahareh; Briskman, Linda title: Clever COVID-19, Clever Citizens-98: Critical and Creative Reflections from Tehran, Toronto, and Sydney date: 2020-08-25 journal: J Bioeth Inq DOI: 10.1007/s11673-020-10032-9 sha: doc_id: 270614 cord_uid: 4q7itegc Reading metadata file and updating bibliogrpahics === updating bibliographic database Building study carrel named keyword-iran-cord === file2bib.sh === OMP: Error #34: System unable to allocate necessary resources for OMP thread: OMP: System error #11: Resource temporarily unavailable OMP: Hint Try decreasing the value of OMP_NUM_THREADS. /data-disk/reader-compute/reader-cord/bin/file2bib.sh: line 39: 91205 Aborted $FILE2BIB "$FILE" > "$OUTPUT" === file2bib.sh === OMP: Error #34: System unable to allocate necessary resources for OMP thread: OMP: System error #11: Resource temporarily unavailable OMP: Hint Try decreasing the value of OMP_NUM_THREADS. /data-disk/reader-compute/reader-cord/bin/file2bib.sh: line 39: 91183 Aborted $FILE2BIB "$FILE" > "$OUTPUT" === file2bib.sh === OMP: Error #34: System unable to allocate necessary resources for OMP thread: OMP: System error #11: Resource temporarily unavailable OMP: Hint Try decreasing the value of OMP_NUM_THREADS. /data-disk/reader-compute/reader-cord/bin/file2bib.sh: line 39: 91222 Aborted $FILE2BIB "$FILE" > "$OUTPUT" === file2bib.sh === OMP: Error #34: System unable to allocate necessary resources for OMP thread: OMP: System error #11: Resource temporarily unavailable OMP: Hint Try decreasing the value of OMP_NUM_THREADS. /data-disk/reader-compute/reader-cord/bin/file2bib.sh: line 39: 91301 Aborted $FILE2BIB "$FILE" > "$OUTPUT" === file2bib.sh === OMP: Error #34: System unable to allocate necessary resources for OMP thread: OMP: System error #11: Resource temporarily unavailable OMP: Hint Try decreasing the value of OMP_NUM_THREADS. /data-disk/reader-compute/reader-cord/bin/file2bib.sh: line 39: 91219 Aborted $FILE2BIB "$FILE" > "$OUTPUT" === file2bib.sh === OMP: Error #34: System unable to allocate necessary resources for OMP thread: OMP: System error #11: Resource temporarily unavailable OMP: Hint Try decreasing the value of OMP_NUM_THREADS. /data-disk/reader-compute/reader-cord/bin/file2bib.sh: line 39: 91207 Aborted $FILE2BIB "$FILE" > "$OUTPUT" === file2bib.sh === OMP: Error #34: System unable to allocate necessary resources for OMP thread: OMP: System error #11: Resource temporarily unavailable OMP: Hint Try decreasing the value of OMP_NUM_THREADS. /data-disk/reader-compute/reader-cord/bin/file2bib.sh: line 39: 91174 Aborted $FILE2BIB "$FILE" > "$OUTPUT" === file2bib.sh === OMP: Error #34: System unable to allocate necessary resources for OMP thread: OMP: System error #11: Resource temporarily unavailable OMP: Hint Try decreasing the value of OMP_NUM_THREADS. /data-disk/reader-compute/reader-cord/bin/file2bib.sh: line 39: 91348 Aborted $FILE2BIB "$FILE" > "$OUTPUT" === file2bib.sh === OMP: Error #34: System unable to allocate necessary resources for OMP thread: OMP: System error #11: Resource temporarily unavailable OMP: Hint Try decreasing the value of OMP_NUM_THREADS. /data-disk/reader-compute/reader-cord/bin/file2bib.sh: line 39: 91209 Aborted $FILE2BIB "$FILE" > "$OUTPUT" === file2bib.sh === OMP: Error #34: System unable to allocate necessary resources for OMP thread: OMP: System error #11: Resource temporarily unavailable OMP: Hint Try decreasing the value of OMP_NUM_THREADS. /data-disk/reader-compute/reader-cord/bin/file2bib.sh: line 39: 91612 Aborted $FILE2BIB "$FILE" > "$OUTPUT" === file2bib.sh === OMP: Error #34: System unable to allocate necessary resources for OMP thread: OMP: System error #11: Resource temporarily unavailable OMP: Hint Try decreasing the value of OMP_NUM_THREADS. /data-disk/reader-compute/reader-cord/bin/file2bib.sh: line 39: 91525 Aborted $FILE2BIB "$FILE" > "$OUTPUT" === file2bib.sh === OMP: Error #34: System unable to allocate necessary resources for OMP thread: OMP: System error #11: Resource temporarily unavailable OMP: Hint Try decreasing the value of OMP_NUM_THREADS. /data-disk/reader-compute/reader-cord/bin/file2bib.sh: line 39: 91432 Aborted $FILE2BIB "$FILE" > "$OUTPUT" === file2bib.sh === OMP: Error #34: System unable to allocate necessary resources for OMP thread: OMP: System error #11: Resource temporarily unavailable OMP: Hint Try decreasing the value of OMP_NUM_THREADS. /data-disk/reader-compute/reader-cord/bin/file2bib.sh: line 39: 91440 Aborted $FILE2BIB "$FILE" > "$OUTPUT" === file2bib.sh === OMP: Error #34: System unable to allocate necessary resources for OMP thread: OMP: System error #11: Resource temporarily unavailable OMP: Hint Try decreasing the value of OMP_NUM_THREADS. /data-disk/reader-compute/reader-cord/bin/file2bib.sh: line 39: 91558 Aborted $FILE2BIB "$FILE" > "$OUTPUT" === file2bib.sh === OMP: Error #34: System unable to allocate necessary resources for OMP thread: OMP: System error #11: Resource temporarily unavailable OMP: Hint Try decreasing the value of OMP_NUM_THREADS. /data-disk/reader-compute/reader-cord/bin/file2bib.sh: line 39: 91283 Aborted $FILE2BIB "$FILE" > "$OUTPUT" === file2bib.sh === OMP: Error #34: System unable to allocate necessary resources for OMP thread: OMP: System error #11: Resource temporarily unavailable OMP: Hint Try decreasing the value of OMP_NUM_THREADS. /data-disk/reader-compute/reader-cord/bin/file2bib.sh: line 39: 92596 Aborted $FILE2BIB "$FILE" > "$OUTPUT" === file2bib.sh === OMP: Error #34: System unable to allocate necessary resources for OMP thread: OMP: System error #11: Resource temporarily unavailable OMP: Hint Try decreasing the value of OMP_NUM_THREADS. /data-disk/reader-compute/reader-cord/bin/file2bib.sh: line 39: 91248 Aborted $FILE2BIB "$FILE" > "$OUTPUT" === file2bib.sh === OMP: Error #34: System unable to allocate necessary resources for OMP thread: OMP: System error #11: Resource temporarily unavailable OMP: Hint Try decreasing the value of OMP_NUM_THREADS. /data-disk/reader-compute/reader-cord/bin/file2bib.sh: line 39: 91709 Aborted $FILE2BIB "$FILE" > "$OUTPUT" === file2bib.sh === OMP: Error #34: System unable to allocate necessary resources for OMP thread: OMP: System error #11: Resource temporarily unavailable OMP: Hint Try decreasing the value of OMP_NUM_THREADS. /data-disk/reader-compute/reader-cord/bin/file2bib.sh: line 39: 92508 Aborted $FILE2BIB "$FILE" > "$OUTPUT" === file2bib.sh === OMP: Error #34: System unable to allocate necessary resources for OMP thread: OMP: System error #11: Resource temporarily unavailable OMP: Hint Try decreasing the value of OMP_NUM_THREADS. /data-disk/reader-compute/reader-cord/bin/file2bib.sh: line 39: 92467 Aborted $FILE2BIB "$FILE" > "$OUTPUT" === file2bib.sh === OMP: Error #34: System unable to allocate necessary resources for OMP thread: OMP: System error #11: Resource temporarily unavailable OMP: Hint Try decreasing the value of OMP_NUM_THREADS. /data-disk/reader-compute/reader-cord/bin/file2bib.sh: line 39: 92470 Aborted $FILE2BIB "$FILE" > "$OUTPUT" === file2bib.sh === OMP: Error #34: System unable to allocate necessary resources for OMP thread: OMP: System error #11: Resource temporarily unavailable OMP: Hint Try decreasing the value of OMP_NUM_THREADS. /data-disk/reader-compute/reader-cord/bin/file2bib.sh: line 39: 91644 Aborted $FILE2BIB "$FILE" > "$OUTPUT" === file2bib.sh === OMP: Error #34: System unable to allocate necessary resources for OMP thread: OMP: System error #11: Resource temporarily unavailable OMP: Hint Try decreasing the value of OMP_NUM_THREADS. /data-disk/reader-compute/reader-cord/bin/file2bib.sh: line 39: 91958 Aborted $FILE2BIB "$FILE" > "$OUTPUT" === file2bib.sh === OMP: Error #34: System unable to allocate necessary resources for OMP thread: OMP: System error #11: Resource temporarily unavailable OMP: Hint Try decreasing the value of OMP_NUM_THREADS. /data-disk/reader-compute/reader-cord/bin/file2bib.sh: line 39: 92460 Aborted $FILE2BIB "$FILE" > "$OUTPUT" === file2bib.sh === OMP: Error #34: System unable to allocate necessary resources for OMP thread: OMP: System error #11: Resource temporarily unavailable OMP: Hint Try decreasing the value of OMP_NUM_THREADS. /data-disk/reader-compute/reader-cord/bin/file2bib.sh: line 39: 91925 Aborted $FILE2BIB "$FILE" > "$OUTPUT" === file2bib.sh === OMP: Error #34: System unable to allocate necessary resources for OMP thread: OMP: System error #11: Resource temporarily unavailable OMP: Hint Try decreasing the value of OMP_NUM_THREADS. /data-disk/reader-compute/reader-cord/bin/file2bib.sh: line 39: 93162 Aborted $FILE2BIB "$FILE" > "$OUTPUT" === file2bib.sh === OMP: Error #34: System unable to allocate necessary resources for OMP thread: OMP: System error #11: Resource temporarily unavailable OMP: Hint Try decreasing the value of OMP_NUM_THREADS. /data-disk/reader-compute/reader-cord/bin/file2bib.sh: line 39: 91584 Aborted $FILE2BIB "$FILE" > "$OUTPUT" === file2bib.sh === OMP: Error #34: System unable to allocate necessary resources for OMP thread: OMP: System error #11: Resource temporarily unavailable OMP: Hint Try decreasing the value of OMP_NUM_THREADS. /data-disk/reader-compute/reader-cord/bin/file2bib.sh: line 39: 93280 Aborted $FILE2BIB "$FILE" > "$OUTPUT" === file2bib.sh === OMP: Error #34: System unable to allocate necessary resources for OMP thread: OMP: System error #11: Resource temporarily unavailable OMP: Hint Try decreasing the value of OMP_NUM_THREADS. /data-disk/reader-compute/reader-cord/bin/file2bib.sh: line 39: 93064 Aborted $FILE2BIB "$FILE" > "$OUTPUT" === file2bib.sh === OMP: Error #34: System unable to allocate necessary resources for OMP thread: OMP: System error #11: Resource temporarily unavailable OMP: Hint Try decreasing the value of OMP_NUM_THREADS. /data-disk/reader-compute/reader-cord/bin/file2bib.sh: line 39: 92471 Aborted $FILE2BIB "$FILE" > "$OUTPUT" === file2bib.sh === OMP: Error #34: System unable to allocate necessary resources for OMP thread: OMP: System error #11: Resource temporarily unavailable OMP: Hint Try decreasing the value of OMP_NUM_THREADS. /data-disk/reader-compute/reader-cord/bin/file2bib.sh: line 39: 92858 Aborted $FILE2BIB "$FILE" > "$OUTPUT" === file2bib.sh === OMP: Error #34: System unable to allocate necessary resources for OMP thread: OMP: System error #11: Resource temporarily unavailable OMP: Hint Try decreasing the value of OMP_NUM_THREADS. /data-disk/reader-compute/reader-cord/bin/file2bib.sh: line 39: 92868 Aborted $FILE2BIB "$FILE" > "$OUTPUT" === file2bib.sh === OMP: Error #34: System unable to allocate necessary resources for OMP thread: OMP: System error #11: Resource temporarily unavailable OMP: Hint Try decreasing the value of OMP_NUM_THREADS. /data-disk/reader-compute/reader-cord/bin/file2bib.sh: line 39: 93141 Aborted $FILE2BIB "$FILE" > "$OUTPUT" === file2bib.sh === OMP: Error #34: System unable to allocate necessary resources for OMP thread: OMP: System error #11: Resource temporarily unavailable OMP: Hint Try decreasing the value of OMP_NUM_THREADS. /data-disk/reader-compute/reader-cord/bin/file2bib.sh: line 39: 91493 Aborted $FILE2BIB "$FILE" > "$OUTPUT" === file2bib.sh === OMP: Error #34: System unable to allocate necessary resources for OMP thread: OMP: System error #11: Resource temporarily unavailable OMP: Hint Try decreasing the value of OMP_NUM_THREADS. /data-disk/reader-compute/reader-cord/bin/file2bib.sh: line 39: 92886 Aborted $FILE2BIB "$FILE" > "$OUTPUT" === file2bib.sh === OMP: Error #34: System unable to allocate necessary resources for OMP thread: OMP: System error #11: Resource temporarily unavailable OMP: Hint Try decreasing the value of OMP_NUM_THREADS. /data-disk/reader-compute/reader-cord/bin/file2bib.sh: line 39: 92257 Aborted $FILE2BIB "$FILE" > "$OUTPUT" === file2bib.sh === OMP: Error #34: System unable to allocate necessary resources for OMP thread: OMP: System error #11: Resource temporarily unavailable OMP: Hint Try decreasing the value of OMP_NUM_THREADS. /data-disk/reader-compute/reader-cord/bin/file2bib.sh: line 39: 93082 Aborted $FILE2BIB "$FILE" > "$OUTPUT" === file2bib.sh === OMP: Error #34: System unable to allocate necessary resources for OMP thread: OMP: System error #11: Resource temporarily unavailable OMP: Hint Try decreasing the value of OMP_NUM_THREADS. /data-disk/reader-compute/reader-cord/bin/file2bib.sh: line 39: 93219 Aborted $FILE2BIB "$FILE" > "$OUTPUT" === file2bib.sh === OMP: Error #34: System unable to allocate necessary resources for OMP thread: OMP: System error #11: Resource temporarily unavailable OMP: Hint Try decreasing the value of OMP_NUM_THREADS. /data-disk/reader-compute/reader-cord/bin/file2bib.sh: line 39: 93131 Aborted $FILE2BIB "$FILE" > "$OUTPUT" === file2bib.sh === id: cord-269679-dfma5kqc author: Badshah, Syed Lal title: Spread of Novel Coronavirus by Returning Pilgrims from Iran to Pakistan date: 2020-04-09 pages: extension: .txt txt: ./txt/cord-269679-dfma5kqc.txt cache: ./cache/cord-269679-dfma5kqc.txt Content-Encoding ISO-8859-1 Content-Type text/plain; charset=ISO-8859-1 X-Parsed-By ['org.apache.tika.parser.DefaultParser', 'org.apache.tika.parser.csv.TextAndCSVParser'] X-TIKA:content_handler ToTextContentHandler X-TIKA:embedded_depth 0 X-TIKA:parse_time_millis 2 resourceName b'cord-269679-dfma5kqc.txt' === file2bib.sh === id: cord-348111-fkjmzpuw author: Pishgar, Elahe title: A spatio-temporal geodatabase of mortalities due to respiratory tract diseases in Tehran, Iran between 2008 and 2018: a data note date: 2020-10-07 pages: extension: .txt txt: ./txt/cord-348111-fkjmzpuw.txt cache: ./cache/cord-348111-fkjmzpuw.txt Content-Encoding UTF-8 Content-Type text/plain; charset=UTF-8 X-Parsed-By ['org.apache.tika.parser.DefaultParser', 'org.apache.tika.parser.csv.TextAndCSVParser'] X-TIKA:content_handler ToTextContentHandler X-TIKA:embedded_depth 0 X-TIKA:parse_time_millis 3 resourceName b'cord-348111-fkjmzpuw.txt' === file2bib.sh === id: cord-270614-4q7itegc author: Bisaillon, Laura title: Clever COVID-19, Clever Citizens-98: Critical and Creative Reflections from Tehran, Toronto, and Sydney date: 2020-08-25 pages: extension: .txt txt: ./txt/cord-270614-4q7itegc.txt cache: ./cache/cord-270614-4q7itegc.txt Content-Encoding UTF-8 Content-Type text/plain; charset=UTF-8 X-Parsed-By ['org.apache.tika.parser.DefaultParser', 'org.apache.tika.parser.csv.TextAndCSVParser'] X-TIKA:content_handler ToTextContentHandler X-TIKA:embedded_depth 0 X-TIKA:parse_time_millis 3 resourceName b'cord-270614-4q7itegc.txt' === file2bib.sh === id: cord-351941-fgtatt40 author: Ghaffarzadegan, Navid title: Simulation‐based estimation of the early spread of COVID‐19 in Iran: actual versus confirmed cases date: 2020-07-06 pages: extension: .txt txt: ./txt/cord-351941-fgtatt40.txt cache: ./cache/cord-351941-fgtatt40.txt Content-Encoding UTF-8 Content-Type text/plain; charset=UTF-8 X-Parsed-By ['org.apache.tika.parser.DefaultParser', 'org.apache.tika.parser.csv.TextAndCSVParser'] X-TIKA:content_handler ToTextContentHandler X-TIKA:embedded_depth 0 X-TIKA:parse_time_millis 4 resourceName b'cord-351941-fgtatt40.txt' Que is empty; done keyword-iran-cord === reduce.pl bib === === reduce.pl bib === === reduce.pl bib === === reduce.pl bib === === reduce.pl bib === === reduce.pl bib === === reduce.pl bib === === reduce.pl bib === === reduce.pl bib === === reduce.pl bib === === reduce.pl bib === id = cord-269679-dfma5kqc author = Badshah, Syed Lal title = Spread of Novel Coronavirus by Returning Pilgrims from Iran to Pakistan date = 2020-04-09 pages = extension = .txt mime = text/plain words = 266 sentences = 23 flesch = 62 summary = key: cord-269679-dfma5kqc authors: Badshah, Syed Lal; Ullah, Asad; Badshah, Syed Hilal; Ahmad, Irshad cord_uid: dfma5kqc Iran was initially reluctant to close its borders with its neighbors as religious tourism is a big part of its revenue generation and the international community has already imposed economic sanctions over it due to its nuclear program. 3 Every year approximately 0.7 million Shia sect Muslims from Pakistan visit for a pilgrimage to various shrines in the cities of Iran that include Qom, Tehran, Tabriz, and Mashhad. It has been estimated that there are over eight thousand sacred sites in Iran alone and every year around eight million foreigners visit these shrines ( Figure 1 ). The pilgrimage mostly includes visits to cities like Karbala, Najaf, Kufa, Samara, and Baghdad in Iraq and several places in Damascus in Syria. Estimation of Coronavirus Disease 2019 (COVID-19) Burden and Potential for International Dissemination of Infection From Iran COVID-19 battle during the toughest sanctions against Iran The authors declared no conflict of interest. cache = ./cache/cord-269679-dfma5kqc.txt txt = ./txt/cord-269679-dfma5kqc.txt === reduce.pl bib === === reduce.pl bib === === reduce.pl bib === === reduce.pl bib === === reduce.pl bib === === reduce.pl bib === === reduce.pl bib === === reduce.pl bib === === reduce.pl bib === === reduce.pl bib === === reduce.pl bib === === reduce.pl bib === === reduce.pl bib === === reduce.pl bib === === reduce.pl bib === === reduce.pl bib === === reduce.pl bib === === reduce.pl bib === === reduce.pl bib === === reduce.pl bib === === reduce.pl bib === === reduce.pl bib === === reduce.pl bib === === reduce.pl bib === === reduce.pl bib === === reduce.pl bib === === reduce.pl bib === id = cord-351941-fgtatt40 author = Ghaffarzadegan, Navid title = Simulation‐based estimation of the early spread of COVID‐19 in Iran: actual versus confirmed cases date = 2020-07-06 pages = extension = .txt mime = text/plain words = 9174 sentences = 452 flesch = 52 summary = Estimates using data up to March 20th, 2020, point to 916,000 (90% UI: 508 K, 1.5 M) cumulative cases and 15,485 (90% UI: 8.4 K, 25.8 K) total deaths, numbers an order of magnitude higher than official statistics. The current paper focuses on using a standard dynamic epidemiological model as a tool for incorporating various sources of data into a unified estimation of the actual trajectory of disease, applying the method to COVID-19 outbreak in Iran. We also use unofficial data points including four observations about the number of Iranian passengers diagnosed with COVID-19 upon arrival in international airports, and three estimates aggregated by healthcare providers in Iran and reported by BBC and Iran International news agencies about total cases of death from COVID-19. We define a likelihood function for change over time (net-inflow) of official reports on cumulative death, recovered and infection assuming they are count events drawn from model-predicted rates (Poisson distribution). cache = ./cache/cord-351941-fgtatt40.txt txt = ./txt/cord-351941-fgtatt40.txt === reduce.pl bib === === reduce.pl bib === === reduce.pl bib === id = cord-270614-4q7itegc author = Bisaillon, Laura title = Clever COVID-19, Clever Citizens-98: Critical and Creative Reflections from Tehran, Toronto, and Sydney date = 2020-08-25 pages = extension = .txt mime = text/plain words = 2912 sentences = 164 flesch = 56 summary = We argue that reflexive comparative analysis bridging social and visual analysis, anchored in embodied conditions of such people, offers a way to learn from responses to COVID-19 while also being an exercise in ethical research practice. We argue that reflexive comparative analysis bridging social and visual analysis, anchored in embodied conditions of such people, offers a way to learn from responses to COVID-19 while also being an exercise in ethical research practice. Such rituals have been repeated for millennia, and there are local and regional variations in the way people in Iran and its bordering countries and their diasporas enact Nowruz and the haft seen. This is a new Fig. 1 Separate, but together: Changing haft seen and Nowruz practices to care for each other within conditions imposed by COVID-19 experience for us, who have shared a roof for more than a decade. cache = ./cache/cord-270614-4q7itegc.txt txt = ./txt/cord-270614-4q7itegc.txt === reduce.pl bib === id = cord-348111-fkjmzpuw author = Pishgar, Elahe title = A spatio-temporal geodatabase of mortalities due to respiratory tract diseases in Tehran, Iran between 2008 and 2018: a data note date = 2020-10-07 pages = extension = .txt mime = text/plain words = 1457 sentences = 95 flesch = 51 summary = title: A spatio-temporal geodatabase of mortalities due to respiratory tract diseases in Tehran, Iran between 2008 and 2018: a data note Mortality rates due to respiratory tract diseases (MRRTDs) follow a spatial pattern and this may suggest a potential link between environmental risk factors and MRRTDs. Spatial analysis of RTDs mortality data in an urban setting can provide new knowledge on spatial variation of potential risk factors for RTDs. This will enable health professionals and urban planners to design tailored interventions. Spatio-temporal analyses of mortality data can provide new knowledge on spatial variation of MRRTDs and potential Open Access BMC Research Notes *Correspondence: kiani.behzad@gmail.com drivers of this variation. Data on 43,176 death events due to RTDs from September 2008 to September 2018 were obtained from the Behesht-e Zahra Organization, a local health department under the supervision of the Tehran Municipality [15] . Data for: mortality due to respiratory tract diseases in Tehran Iran between cache = ./cache/cord-348111-fkjmzpuw.txt txt = ./txt/cord-348111-fkjmzpuw.txt === reduce.pl bib === ===== Reducing email addresses cord-005279-w69ao8ic cord-353976-gns5omyb cord-348111-fkjmzpuw Creating transaction Updating adr table ===== Reducing keywords cord-005508-6zlqny9m cord-005279-w69ao8ic cord-265682-yac7kzaf cord-103711-tnw82hbm cord-257099-8k28vkgf cord-004110-xc8vv9x8 cord-004041-2b2h1xog cord-248932-i1v2lyd2 cord-032716-i6hfj8ca cord-255560-c8s9f12f cord-263518-6puccigu cord-276583-j8bf0eme cord-269679-dfma5kqc cord-294690-fpjhkb4g cord-271679-94h6rcih cord-313286-nqvuas3p cord-312784-ykko0al5 cord-283133-jspfwuqu cord-322796-ojfrvtuy cord-306925-yt5cscf1 cord-272828-13i2y9kc cord-311495-svgw59ic cord-301720-majpfxqn cord-337000-k1qq4qgg cord-318043-1x3dp1vv cord-336192-5uxq5xrs cord-340132-t77pab71 cord-353976-gns5omyb cord-315925-hnvf634e cord-339235-8xslz4bs cord-342517-bzmhjvr5 cord-313904-745u0si8 cord-331701-izkz1hz4 cord-309762-p266f3el cord-320895-y6pzrbdi cord-303331-xolksoy3 cord-347353-ll2pnl81 cord-269818-ko14wjf7 cord-356117-ksfcc8x8 cord-351941-fgtatt40 cord-348111-fkjmzpuw cord-270614-4q7itegc cord-328930-5a0z1ryz Creating transaction Updating wrd table ===== Reducing urls cord-004110-xc8vv9x8 cord-103711-tnw82hbm cord-294690-fpjhkb4g cord-313286-nqvuas3p cord-322796-ojfrvtuy cord-313904-745u0si8 cord-336192-5uxq5xrs cord-353976-gns5omyb cord-337000-k1qq4qgg cord-315925-hnvf634e cord-339235-8xslz4bs cord-347353-ll2pnl81 cord-303331-xolksoy3 cord-328930-5a0z1ryz cord-348111-fkjmzpuw Creating transaction Updating url table ===== Reducing named entities cord-005508-6zlqny9m cord-265682-yac7kzaf cord-005279-w69ao8ic cord-257099-8k28vkgf cord-004110-xc8vv9x8 cord-103711-tnw82hbm cord-004041-2b2h1xog cord-248932-i1v2lyd2 cord-032716-i6hfj8ca cord-269679-dfma5kqc cord-255560-c8s9f12f cord-263518-6puccigu cord-276583-j8bf0eme cord-294690-fpjhkb4g cord-271679-94h6rcih cord-322796-ojfrvtuy cord-313286-nqvuas3p cord-312784-ykko0al5 cord-283133-jspfwuqu cord-301720-majpfxqn cord-272828-13i2y9kc cord-306925-yt5cscf1 cord-311495-svgw59ic cord-337000-k1qq4qgg cord-318043-1x3dp1vv cord-336192-5uxq5xrs cord-353976-gns5omyb cord-340132-t77pab71 cord-315925-hnvf634e cord-313904-745u0si8 cord-339235-8xslz4bs cord-342517-bzmhjvr5 cord-309762-p266f3el cord-347353-ll2pnl81 cord-303331-xolksoy3 cord-320895-y6pzrbdi cord-331701-izkz1hz4 cord-328930-5a0z1ryz cord-269818-ko14wjf7 cord-351941-fgtatt40 cord-348111-fkjmzpuw cord-270614-4q7itegc cord-356117-ksfcc8x8 Creating transaction Updating ent table ===== Reducing parts of speech cord-265682-yac7kzaf cord-005508-6zlqny9m cord-005279-w69ao8ic cord-257099-8k28vkgf cord-269679-dfma5kqc cord-103711-tnw82hbm cord-004110-xc8vv9x8 cord-004041-2b2h1xog cord-255560-c8s9f12f cord-248932-i1v2lyd2 cord-294690-fpjhkb4g cord-276583-j8bf0eme cord-263518-6puccigu cord-032716-i6hfj8ca cord-313286-nqvuas3p cord-312784-ykko0al5 cord-322796-ojfrvtuy cord-283133-jspfwuqu cord-306925-yt5cscf1 cord-272828-13i2y9kc cord-271679-94h6rcih cord-337000-k1qq4qgg cord-301720-majpfxqn cord-318043-1x3dp1vv cord-353976-gns5omyb cord-311495-svgw59ic cord-340132-t77pab71 cord-336192-5uxq5xrs cord-315925-hnvf634e cord-339235-8xslz4bs cord-313904-745u0si8 cord-309762-p266f3el cord-331701-izkz1hz4 cord-320895-y6pzrbdi cord-269818-ko14wjf7 cord-342517-bzmhjvr5 cord-347353-ll2pnl81 cord-348111-fkjmzpuw cord-356117-ksfcc8x8 cord-270614-4q7itegc cord-303331-xolksoy3 cord-328930-5a0z1ryz cord-351941-fgtatt40 Creating transaction Updating pos table Building ./etc/reader.txt cord-351941-fgtatt40 cord-248932-i1v2lyd2 cord-303331-xolksoy3 cord-328930-5a0z1ryz cord-301720-majpfxqn cord-339235-8xslz4bs number of items: 43 sum of words: 13,809 average size in words: 3,452 average readability score: 55 nouns: data; cases; energy; study; countries; health; disease; infection; outbreak; number; virus; model; people; time; patients; risk; analysis; country; epidemic; pandemic; misinformation; sanctions; viruses; death; population; rate; information; policy; research; measures; influenza; coronavirus; hospital; system; response; security; results; factors; case; transmission; government; years; control; world; care; media; prevalence; preprint; studies; power verbs: using; based; included; reported; show; provide; done; estimate; made; considering; increases; identified; following; developed; found; according; confirmed; taken; related; leading; infected; spread; compared; assessing; affected; isolated; set; reduce; needed; control; indicate; causes; seen; obtain; given; supported; changing; requiring; collected; remain; presents; conducted; displayed; becoming; implemented; tested; occurring; suggest; performed; assuming adjectives: covid-19; social; different; new; infectious; high; first; public; economic; iranian; infected; human; effective; international; many; available; respiratory; important; significant; clinical; avian; biological; global; various; medical; early; national; current; total; renewable; several; major; chinese; olfactory; low; similar; higher; non; recent; official; novel; key; main; basic; due; large; common; average; specific; potential adverbs: also; however; well; therefore; even; respectively; especially; first; still; highly; significantly; often; yet; now; recently; finally; furthermore; worldwide; already; far; moreover; particularly; rather; much; currently; almost; directly; relatively; later; rapidly; just; generally; potentially; mainly; less; previously; largely; hence; early; clearly; specifically; officially; nearly; mostly; fully; approximately; together; globally; soon; instead pronouns: we; it; our; their; its; they; i; them; your; us; you; itself; my; he; his; themselves; one; she; him; ourselves; me; himself; her proper nouns: Iran; COVID-19; China; March; H9N2; Health; SARS; US; Russia; IBV; April; Tehran; Coronavirus; Toxocara; Fig; CoV-2; United; February; USA; EMRI; PCR; Wuhan; World; Trump; States; ES; Kazakhstan; Province; HA; New; Caspian; Table; Organization; ND; IR; National; Fars; Sea; sha; January; East; Qom; Azerbaijan; Middle; CC; Toxascaris; Research; Medical; Korea; June keywords: iran; covid-19; china; case; sars; russia; ibv; health; h9n2; april; working; virus; usa; united; trump; toxocara; toxascaris; tehran; svm; stress; states; sanction; research; pwud; prevalence; power; pharmaceutical; pcr; participant; nscir; nowruz; newcastle; new; misinformation; march; kazakhstan; hospital; group; fars; energy; emri; eimeria; disaster; death; cord; chinese; cfr; cfa; caspian; biological one topic; one dimension: iran file(s): https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7093542/ titles(s): The data set development for the National Spinal Cord Injury Registry of Iran (NSCIR-IR): progress toward improving the quality of care three topics; one dimension: covid; iran; energy file(s): https://www.ncbi.nlm.nih.gov/pubmed/32834468/, https://doi.org/10.34171/mjiri.34.21, https://www.sciencedirect.com/science/article/pii/S0301420720300532 titles(s): Simulation‐based estimation of the early spread of COVID‐19 in Iran: actual versus confirmed cases | Factors affecting hospital response in biological disasters: A qualitative study | Establishing and comparing energy security trends in resource-rich exporting nations (Russia and the Caspian Sea region) five topics; three dimensions: covid iran 2020; iran misinformation sanctions; data health hospital; energy iran security; viruses virus iran file(s): https://www.ncbi.nlm.nih.gov/pubmed/32834468/, https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7518878/, https://doi.org/10.34171/mjiri.34.21, https://www.sciencedirect.com/science/article/pii/S0301420720300532, https://www.ncbi.nlm.nih.gov/pubmed/32214973/ titles(s): Simulation‐based estimation of the early spread of COVID‐19 in Iran: actual versus confirmed cases | What's new in economic sanctions? | Factors affecting hospital response in biological disasters: A qualitative study | Establishing and comparing energy security trends in resource-rich exporting nations (Russia and the Caspian Sea region) | Full-length characterization and phylogenetic analysis of hemagglutinin gene of H9N2 virus isolated from broilers in Iran during 1998–2007 Type: cord title: keyword-iran-cord date: 2021-05-25 time: 15:23 username: emorgan patron: Eric Morgan email: emorgan@nd.edu input: keywords:iran ==== make-pages.sh htm files ==== make-pages.sh complex files ==== make-pages.sh named enities ==== making bibliographics id: cord-313286-nqvuas3p author: Afshar Jahanshahi, A. title: The distress of Iranian adults during the Covid-19 pandemic - More distressed than the Chinese and with different predictors date: 2020-04-07 words: nan sentences: nan pages: flesch: nan cache: txt: summary: abstract: Background Early papers on the mental health of the public during the Covid-19 pandemic surveyed participants from China. Outside of China, Iran has emerged as one of the most affected countries with a high death count and rate. The paper presents the first empirical evidence from Iranian adults during the Covid-19 pandemic on their level of distress and its predictors. Methods On March 25-28, 2020, a dire time for Covid-19 in Iran, we surveyed 1058 adults from all 30 provinces in Iran using the Covid-19 Peritraumatic Distress Index (CPDI). Findings The distress level of Iranian adults (mean: 34.54; s.d.: 14.92) was significantly higher (mean difference: 10.9; t=22.7; p<0.0001; 95% CI: 10.0 to 11.8) than that of Chinese adults (mean: 23.65; s.d.: 5.45) as reported in a prior study with the same measure of Covid-19 Peritraumatic Distress Index (CPDI). We also found the predictors of distress in Iran vary from those in China. Interpretation Our findings that the predictors of distress in Iran vary from those in China suggest the need to study the predictors of mental health in individual countries during the Covid-19 pandemic to effectively identify and screen for those more susceptible to mental health issues. Keywords: Coronavirus; 2019-nCoV; Distress; Mental health; Psychiatric screening; Identifiers of mental issues in Covid-19 pandemic; Iran; Early evidence url: http://medrxiv.org/cgi/content/short/2020.04.03.20052571v1?rss=1 doi: 10.1101/2020.04.03.20052571 id: cord-318043-1x3dp1vv author: Ahmadi, Mohsen title: Investigation of effective climatology parameters on COVID-19 outbreak in Iran date: 2020-04-17 words: nan sentences: nan pages: flesch: nan cache: txt: summary: abstract: Abstract SARS CoV-2 (COVID-19) Coronavirus cases are confirmed throughout the world and millions of people are being put into quarantine. A better understanding of the effective parameters in infection spreading can bring about a logical measurement toward COVID-19. The effect of climatic factors on spreading of COVID-19 can play an important role in the new Coronavirus outbreak. In this study, the main parameters, including the number of infected people with COVID-19, population density, intra-provincial movement, and infection days to end of the study period, average temperature, average precipitation, humidity, wind speed, and average solar radiation investigated to understand how can these parameters effects on COVID-19 spreading in Iran? The Partial correlation coefficient (PCC) and Sobol’-Jansen methods are used for analyzing the effect and correlation of variables with the COVID-19 spreading rate. The result of sensitivity analysis shows that the population density, intra-provincial movement have a direct relationship with the infection outbreak. Conversely, areas with low values of wind speed, humidity, and solar radiation exposure to a high rate of infection that support the virus's survival. The provinces such as Tehran, Mazandaran, Alborz, Gilan, and Qom are more susceptible to infection because of high population density, intra-provincial movements and high humidity rate in comparison with Southern provinces. url: https://doi.org/10.1016/j.scitotenv.2020.138705 doi: 10.1016/j.scitotenv.2020.138705 id: cord-309762-p266f3el author: Ahmady, Soleiman title: Transition to Virtual Learning During the Coronavirus Disease–2019 Crisis in Iran: Opportunity Or Challenge? date: 2020-05-07 words: nan sentences: nan pages: flesch: nan cache: txt: summary: abstract: COVID-19 is a respiratory disease that can spread from one person to person. This virus is a novel coronavirus that was first identified during an investigation into an outbreak in Wuhan, China. Iran’s novel coronavirus cases reached 17,361 on 17 March, while death toll reached approximately 1,135. Its first death was officially announced on 20 February 2020 in Qom. The 2019 coronavirus pandemic has affected educational systems around the world, Also in Iran, and led to the closure of face to face courses in schools and universities. Therefore, virtual education can be seen as a turning point in education of these days in Iran. url: https://doi.org/10.1017/dmp.2020.142 doi: 10.1017/dmp.2020.142 id: cord-336192-5uxq5xrs author: Alavi, Maryam title: Coordination, cooperation, and creativity within harm reduction networks in Iran: COVID-19 prevention and control among people who use drugs date: 2020-08-17 words: nan sentences: nan pages: flesch: nan cache: txt: summary: abstract: An unprecedented public health crisis confronts the world. Iran is among the hardest-hit countries, where effects of the COVID-19 pandemic are stretched across society and felt by the most marginalised people. Among people who use drugs, a comprehensive response to the crisis calls for broad collaboration, coordination, and creativity involving multiple government and non-government organisations. This commentary provides early insights into an unfolding experience, demonstrating the operational and policy impact of an initiative, bringing together a diverse array of harm reduction stakeholders to address the pandemic. In the context of lived experiences of social and economic marginalization, this initiative intends to lead efforts in developing an equitable response to the COVID-19 pandemic. url: https://doi.org/10.1016/j.drugpo.2020.102908 doi: 10.1016/j.drugpo.2020.102908 id: cord-255560-c8s9f12f author: Arab-Mazar, Zahra title: Mapping the incidence of the COVID-19 hotspot in Iran – Implications for Travellers date: 2020-03-14 words: nan sentences: nan pages: flesch: nan cache: txt: summary: abstract: nan url: https://doi.org/10.1016/j.tmaid.2020.101630 doi: 10.1016/j.tmaid.2020.101630 id: cord-320895-y6pzrbdi author: Arab-Zozani, Morteza title: COVID-19 in Iran: the Good, the Bad, and the Ugly Strategies for Preparedness – A Report From the Field date: 2020-09-27 words: nan sentences: nan pages: flesch: nan cache: txt: summary: abstract: The emergence of coronavirus disease 2019 (COVID-19), a novel unknown virus that is challenging whole countries all over the world, has prompted different strategies from various governments. Iran, as one of the first countries to experience the onset of the virus outbreak, made and implemented some policies that should be assessed, so that lessons may be learned for the future. Although some negative actions and policies, such as delays in cancellation of international flights especially from China, not taking the disease seriously and comparing it with seasonal influenza, and the like, are hard to ignore, some impressive actions are also vividly clear. Policies, such as social distancing, dramatically increasing social awareness about preventive actions in terms of public health, and using masks and hand washing, were cost-effective policies that resulted in successful control of the virus in the first onset. While some quite clearly ineffective decisions were made by Iranian authorities, the huge catastrophic effect of sanctions cannot be forgotten. Possibly in level situations with similar countries, Iran will have far better results regarding preparedness for future pandemics like COVID-19. url: https://www.ncbi.nlm.nih.gov/pubmed/32713382/ doi: 10.1017/dmp.2020.261 id: cord-356117-ksfcc8x8 author: Asadi‐Pooya, Ali A. title: Impacts of the COVID‐19 pandemic on Iranian patients with epilepsy date: 2020-07-06 words: nan sentences: nan pages: flesch: nan cache: txt: summary: abstract: OBJECTIVE: To investigate the effects of COVID‐19 pandemic on patients’ perceptions of hardship in obtaining their drugs and if this pandemic and the social restrictions in response to that has resulted in any changes in their seizure control status. We also investigated factors potentially associated with the perceptions of difficulty in obtaining their drugs (e.g., polytherapy vs. monotherapy, taking imported drugs, and seizure status worsening). METHODS: 1. What has been your experience on obtaining your antiseizure medications in the past four weeks (compared to before)? 2. Have you experienced any changes in your seizure control status in the past four weeks? RESULTS: We included 100 patients (53 male and 47 female patients). In response to the question “Have you had any difficulties in the past 4 weeks to obtain your drugs?”, 31 people (31%) expressed hardship obtaining their drugs. In response to the question “How has been your seizure control status compared with before?”, six people (6%) expressed worsening of their seizure control status in the past 4 weeks. None of the patients reported symptoms of coronavirus infection. CONCLUSION: About one‐third of patients with epilepsy expressed significant hardship obtaining their drugs after the intensification of the COVID‐19 outbreak in Iran. The current COVID‐19 pandemic could be considered as a major shock to a nation that has already been under significant pressure (i.e., Iran). url: https://doi.org/10.1111/ane.13310 doi: 10.1111/ane.13310 id: cord-311495-svgw59ic author: Ayati, Nayyereh title: Short and long term impacts of COVID-19 on the pharmaceutical sector date: 2020-07-03 words: nan sentences: nan pages: flesch: nan cache: txt: summary: abstract: BACKGROUND: The novel coronavirus disease 2019 (COVID-19) was characterized as a global pandemic by the WHO on March 11th, 2020. This pandemic had major effects on the health market, the pharmaceutical sector, and was associated with considerable impacts; which may appear in short and long-term time-horizon and need identification and appropriate planning to reduce their socio-economic burden. OBJECTIVES: Current short communication study assessed pharmaceutical market crisis during the COVID-19 era; discussing short- and long-term impacts of the pandemic on the pharmaceutical sector. RESULTS: Short-term impacts of COVID-19 pandemic includes demand changes, regulation revisions, research and development process changes and the shift towards tele-communication and tele-medicine. In addition, industry growth slow-down, approval delays, moving towards self-sufficiency in pharm-production supply chain and trend changes in consumption of health-market products along with ethical dilemma could be anticipated as long-term impacts of COVID-19 pandemic on pharmaceutical sector in both global and local levels. CONCLUSION: The pandemic of COVID-19 poses considerable crisis on the health markets, including the pharmaceutical sector; and identification of these effects, may guide policy-makers towards more evidence-informed planning to overcome accompanying challenges. [Figure: see text] url: https://www.ncbi.nlm.nih.gov/pubmed/32617864/ doi: 10.1007/s40199-020-00358-5 id: cord-005508-6zlqny9m author: Azadmanjir, Zahra title: The data set development for the National Spinal Cord Injury Registry of Iran (NSCIR-IR): progress toward improving the quality of care date: 2020-03-24 words: nan sentences: nan pages: flesch: nan cache: txt: summary: abstract: STUDY DESIGN: Descriptive study. OBJECTIVES: The aim of this manuscript is to describe the development process of the data set for the National Spinal Cord Injury Registry of Iran (NSCIR-IR). SETTING: SCI community in Iran. METHODS: The NSCIR-IR data set was developed in 8 months, from March 2015 to October 2015. An expert panel of 14 members was formed. After a review of data sets of similar registries in developed countries, the selection and modification of the basic framework were performed over 16 meetings, based on the objectives and feasibility of the registry. RESULTS: The final version of the data set was composed of 376 data elements including sociodemographic, hospital admission, injury incidence, prehospital procedures, emergency department visit, medical history, vertebral injury, spinal cord injury details, interventions, complications, and discharge data. It also includes 163 components of the International Standards for the Neurologic Classification of Spinal Cord Injury (ISNCSCI) and 65 data elements related to quality of life, pressure ulcers, pain, and spasticity. CONCLUSION: The NSCIR-IR data set was developed in order to meet the quality improvement objectives of the registry. The process was centered around choosing the data elements assessing care provided to individuals in the acute and chronic phases of SCI in hospital settings. The International Spinal Cord Injury Data Set was selected as a basic framework, helped by comparison with data from other countries. Expert panel modifications facilitated the implementation of the registry process with the current clinical workflow in hospitals. url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7093542/ doi: 10.1038/s41394-020-0265-x id: cord-269679-dfma5kqc author: Badshah, Syed Lal title: Spread of Novel Coronavirus by Returning Pilgrims from Iran to Pakistan date: 2020-04-09 words: 266.0 sentences: 23.0 pages: flesch: 62.0 cache: ./cache/cord-269679-dfma5kqc.txt txt: ./txt/cord-269679-dfma5kqc.txt summary: key: cord-269679-dfma5kqc authors: Badshah, Syed Lal; Ullah, Asad; Badshah, Syed Hilal; Ahmad, Irshad cord_uid: dfma5kqc Iran was initially reluctant to close its borders with its neighbors as religious tourism is a big part of its revenue generation and the international community has already imposed economic sanctions over it due to its nuclear program. 3 Every year approximately 0.7 million Shia sect Muslims from Pakistan visit for a pilgrimage to various shrines in the cities of Iran that include Qom, Tehran, Tabriz, and Mashhad. It has been estimated that there are over eight thousand sacred sites in Iran alone and every year around eight million foreigners visit these shrines ( Figure 1 ). The pilgrimage mostly includes visits to cities like Karbala, Najaf, Kufa, Samara, and Baghdad in Iraq and several places in Damascus in Syria. Estimation of Coronavirus Disease 2019 (COVID-19) Burden and Potential for International Dissemination of Infection From Iran COVID-19 battle during the toughest sanctions against Iran The authors declared no conflict of interest. abstract: nan url: https://www.ncbi.nlm.nih.gov/pubmed/32268358/ doi: 10.1093/jtm/taaa044 id: cord-322796-ojfrvtuy author: Bagheri, S. H. R. title: Coincidence of COVID-19 epidemic and olfactory dysfunction outbreak date: 2020-03-27 words: nan sentences: nan pages: flesch: nan cache: txt: summary: abstract: Background Recent surge of olfactory dysfunction in patients who were referred to ENT clinics and concurrent COVID-19epidemic in Iran motivated us to evaluate anosmic/hyposmic patients to find any relation between these two events. Methods This is a cross-sectional study with an online checklist on voluntary cases in all provinces of Iran between the 12th and 17th March, 2020. Cases was defined as self-reported anosmia/hyposmia in responders fewer than 4 weeks later (from start the of COVID-19 epidemic in Iran). Variables consist of clinical presentations, related past medical history, family history of recent respiratory tract infection and hospitalization. Results In this study 10069 participants aged 32.5 +/- 8.6 (7-78) years, 71.13% female and 81.68% non-smoker completed online checklist. They reported 10.55% a history of a trip out of home town and 1.1% hospitalization due to respiratory problems recently. From family members 12.17% had a history of severe respiratory disease in recent days and 48.23% had anosmia/hyposmia. Correlation between the number of olfactory disorder and reported COVID-19 patients in all 31 provinces till 16th March 2020 was highly significant (Spearman correlation coefficient=0.87, p-Value<0.001). The onset of anosmia was sudden in 76.24% and till the time of filling the questionnaire in 60.90% of patients decreased sense of smell was constant. Also 83.38 of this patients had decreased taste sensation in association with anosmia. Conclusions It seems that we have a surge in outbreak of olfactory dysfunction happened in Iran during the COVID-19 epidemic. The exact mechanism of anosmia/hyposmia in COVID-19 patients needs further investigations. url: https://doi.org/10.1101/2020.03.23.20041889 doi: 10.1101/2020.03.23.20041889 id: cord-272828-13i2y9kc author: Bagheri, Seyed Hamidreza title: Coincidence of COVID-19 epidemic and olfactory dysfunction outbreak in Iran date: 2020-06-15 words: nan sentences: nan pages: flesch: nan cache: txt: summary: abstract: Background: The occurrence of anosmia/hyposmia during novel Coronavirus disease 2019 (COVID-19) may indicate a relationship between coincidence of olfactory dysfunction and coronavirus disease 2019 (COVID-19). This study aimed to assess the frequency of self-reported anosmia/hyposmia during COVID-19 epidemic in Iran. Methods: This population-based cross sectional study was performed through an online questionnaire from March 12 to 17, 2020. Cases from all provinces of Iran voluntarily participated in this study. Patients completed a 33-item patient-reported online questionnaire, including smell and taste dysfunction and their comorbidities, along with their basic characteristics and past medical histories. The inclusion criteria were self-reported anosmia/hyposmia during the past 4 weeks, from the start of COVID-19 epidemic in Iran. Results: A total of 10 069 participants aged 32.5±8.6 (7-78) years took part in this study, of them 71.13% women and 81.68% nonsmokers completed the online questionnaire. The correlation between the number of olfactory disorders and reported COVID-19 patients in all provinces up to March 17, 2020 was highly significant (Spearman correlation coefficient = 0.87, P< 0.001). A sudden onset of olfactory dysfunction was reported in 76.24% of the participations and persistent anosmia in 60.90% from the start of COVID19 epidemic. In addition, 80.38% of participants reported concomitant olfactory and gustatory dysfunctions. Conclusion: An outbreak of olfactory dysfunction occurred in Iran during the COVID-19 epidemic. The exact mechanisms by which anosmia/hyposmia occurred in patients with COVID-19 call for further investigations. url: https://doi.org/10.34171/mjiri.34.62 doi: 10.34171/mjiri.34.62 id: cord-005279-w69ao8ic author: Bahrami, Somayeh title: Prevalence of subclinical coccidiosis in river buffalo calves of southwest of Iran date: 2013-12-13 words: nan sentences: nan pages: flesch: nan cache: txt: summary: abstract: Despite the importance of buffalo farming in Iran, little is known in this country about the abundance and distribution of Eimeria spp. in the animal species. The present study was designed to investigate the prevalence and species characterization of Eimeria oocysts in river buffalo calves of Khuzestan province, southwest of Iran. Of the total 108 fecal samples examined for Eimeria, 108 (100%) were found infected with 11 species of the parasite. Among the identified species of Eimeria, E. bovis was found to be the predominant etiological agent (76.85%), followed in order by E. canadensis (62.96%), E. zuernii (47.2%), E. ellipsoidalis (26.85%), E. subspherica (25.92%), E. brasiliensis (19.4%), E. auburnensis (18.51%), E. alabamensis (14.81%), E. pellita (11.1%), E. illinoisensis (5.5%) and E. bukidnonensis (2.7%). In most calves multiple infections with three species were present. While, 20.7% of calves showed heavy infection, 50.4 and 24.8% of calves showed weak and moderate infection, respectively. There was no significant difference in the OPG values between the calves of different localities. There was also no significant difference between the prevalence rate of infection in males and females. A total of 16.6% of all faecal samples were found to be diarrheic. A highly significant relationship could be identified between the occurrence of diarrhea and the level of E. bovis and E. zuernii oocysts excretion. Considering the pervasive occurrence and negative effects of the infection on the health condition and the growth performance of buffalo calves, infections should receive increased attention by both farmers and veterinarians. url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7089378/ doi: 10.2478/s11686-013-0167-1 id: cord-315925-hnvf634e author: Bandarian, Fatemeh title: Endocrinology and Metabolism Research Institute from inception to maturity: an overview of 25-year activity date: 2020-10-03 words: nan sentences: nan pages: flesch: nan cache: txt: summary: abstract: Endocrinology and Metabolism Research Institute (EMRI) was founded in 1993. EMRI progressed step by step from inception and reached to its maturation during the past 25 years. EMRI has expanded and progressed in different aspects including human resources and infrastructures (laboratories and new technologies) and has obtained the first rank in the country in endocrinology research. It has also collaborated with regional and international organizations such as World Health Organization (WHO), International Osteoporosis Foundation (IOF), and American Association of Clinical Endocrinologists (AACE). This article provides an overview of EMRI activities during a quarter of a century. url: https://doi.org/10.1007/s40200-020-00645-7 doi: 10.1007/s40200-020-00645-7 id: cord-270614-4q7itegc author: Bisaillon, Laura title: Clever COVID-19, Clever Citizens-98: Critical and Creative Reflections from Tehran, Toronto, and Sydney date: 2020-08-25 words: 2912.0 sentences: 164.0 pages: flesch: 56.0 cache: ./cache/cord-270614-4q7itegc.txt txt: ./txt/cord-270614-4q7itegc.txt summary: We argue that reflexive comparative analysis bridging social and visual analysis, anchored in embodied conditions of such people, offers a way to learn from responses to COVID-19 while also being an exercise in ethical research practice. We argue that reflexive comparative analysis bridging social and visual analysis, anchored in embodied conditions of such people, offers a way to learn from responses to COVID-19 while also being an exercise in ethical research practice. Such rituals have been repeated for millennia, and there are local and regional variations in the way people in Iran and its bordering countries and their diasporas enact Nowruz and the haft seen. This is a new Fig. 1 Separate, but together: Changing haft seen and Nowruz practices to care for each other within conditions imposed by COVID-19 experience for us, who have shared a roof for more than a decade. abstract: Our world suffers. Some people suffer more than others. Since the first part of 2020, ours is justly described as a time of uncertainty, threat, and upheaval. In this article, we offer reflections threaded narratively, told from the specificity of our societal contexts in Iran, Canada, and Australia. What might we learn in the present and anticipated future from people living chronically within conditions of uncertainty and immobility and also those experiencing uncertainty and immobility for the first time? We argue that reflexive comparative analysis bridging social and visual analysis, anchored in embodied conditions of such people, offers a way to learn from responses to COVID-19 while also being an exercise in ethical research practice. This reflection builds on and extends from our scholarly collaborations that have been ongoing since 2015. Our title recognizes this specific virus as stealthy. Importantly, our choice of words identifies resident Iranians—whose experiences were the original impetuses for this paper, and whose lives provide its empirical basis (98 is Iran’s country code)—as equally steely. url: https://www.ncbi.nlm.nih.gov/pubmed/32840857/ doi: 10.1007/s11673-020-10032-9 id: cord-339235-8xslz4bs author: Boroomand, Zahra title: Molecular detection and phylogenetic properties of isolated infectious bronchitis viruses from broilers in Ahvaz, southwest Iran, based on partial sequences of spike gene date: 2018-09-15 words: nan sentences: nan pages: flesch: nan cache: txt: summary: abstract: Infectious bronchitis (IB) is a highly contagious disease involving mostly upper respiratory tract in chickens, leading to significant economic losses in the poultry industry worldwide. One of the major concerns regarding to IB is the emergence of new types of infectious bronchitis viruses (IBVs). The purpose of this study was to identify the IBVs isolated from Iranian broiler chickens with respiratory symptoms. Twenty-five broiler flocks around Ahwaz (southwest of Iran) were examined for IBV. The specimens including trachea, lung, liver, kidney, and ceacal tonsil, were collected from diseased birds and inoculated into chicken embryonated eggs. Harvested allantoic fluids were subjected to reverse transcription polymerase chain reaction (RT-PCR) using primers in order to amplify spike 1 (S1) gene of IBV. The RT-PCR products of four IBV isolates were sequenced. The results showed that from 25 examined flocks with respiratory disease, 12 flocks (48.00%) were positive for IBV. In phylogenetic analysis, our isolates were closely related to the QX-like viruses such as PCRLab/06/2012 (Iran), QX, HC9, HC10, CK/CH/GX/NN11-1, CK/CH/JS/YC11-1, CK/CH/JS/2010/13, CK/CH/JS/2011/2 (China), QX/SGK-21, QX/SGK-11 (Iraq) with nucleotide homology up to 99.00%. This study indicates the role of IBVs in the respiratory disorders of broiler flocks located in southwest Iran, and also the existence of a variant of IBV, which is distinguishable from the other Iranian variants. url: https://doi.org/10.30466/vrf.2018.32089 doi: 10.30466/vrf.2018.32089 id: cord-265682-yac7kzaf author: Eden, John-Sebastian title: An emergent clade of SARS-CoV-2 linked to returned travellers from Iran date: 2020-04-10 words: nan sentences: nan pages: flesch: nan cache: txt: summary: abstract: The SARS-CoV-2 epidemic has rapidly spread outside China with major outbreaks occurring in Italy, South Korea, and Iran. Phylogenetic analyses of whole-genome sequencing data identified a distinct SARS-CoV-2 clade linked to travellers returning from Iran to Australia and New Zealand. This study highlights potential viral diversity driving the epidemic in Iran, and underscores the power of rapid genome sequencing and public data sharing to improve the detection and management of emerging infectious diseases. url: https://www.ncbi.nlm.nih.gov/pubmed/32296544/ doi: 10.1093/ve/veaa027 id: cord-331701-izkz1hz4 author: Eden, John-Sebastian title: An emergent clade of SARS-CoV-2 linked to returned travellers from Iran date: 2020-03-17 words: nan sentences: nan pages: flesch: nan cache: txt: summary: abstract: The SARS-CoV-2 epidemic has rapidly spread outside China with major outbreaks occurring in Italy, South Korea and Iran. Phylogenetic analyses of whole genome sequencing data identified a distinct SARS-CoV-2 clade linked to travellers returning from Iran to Australia and New Zealand. This study highlights potential viral diversity driving the epidemic in Iran, and underscores the power of rapid genome sequencing and public data sharing to improve the detection and management of emerging infectious diseases. url: https://doi.org/10.1101/2020.03.15.992818 doi: 10.1101/2020.03.15.992818 id: cord-103711-tnw82hbm author: Einian, Majid title: Modeling of COVID-19 Pandemic and Scenarios for Containment date: 2020-03-30 words: nan sentences: nan pages: flesch: nan cache: txt: summary: abstract: The impact of COVID-19 pandemic on the global health and world's economy have been profound and unseen since the Spanish flu of 1918-19. As of now, many countries have been severely affected, partly because of slow responses to the crisis, ill-preparedness of their health system, and the fragile health infrastructure and the shortage of protective equipment. This note evaluates various scenarios, based on an estimation of number of identified and unidentified infected cases, and examines the effectiveness of different policy responses to contain this pandemic. Our result, based on an estimation of the model for Iran, show that in many instances the number of unidentified cases, including asymptomatic individuals, could be much bigger than the reported numbers. The results confirm that in such circumstances, social distancing alone cannot be an effective policy unless a large portion of the population confine themselves for an extended period of time, which is not only difficult to implement, but it could also prove extremely costly and damaging to the economy. An alternative policy, this note argues, is to couple effective social distancing with extensive testing, even to those who are asymptomatic, and isolate the identified cases actively. Otherwise, many lives will be lost, and the health system will collapse, adding to the ongoing economic troubles that many countries have started to encounter. url: https://doi.org/10.1101/2020.03.27.20045849 doi: 10.1101/2020.03.27.20045849 id: cord-004110-xc8vv9x8 author: Eslahi, Aida Vafae title: Prevalence of Toxocara and Toxascaris infection among human and animals in Iran with meta-analysis approach date: 2020-01-07 words: nan sentences: nan pages: flesch: nan cache: txt: summary: abstract: BACKGROUND: Toxocariasis is a worldwide zoonotic parasitic disease caused by species of Toxocara and Toxascaris, common in dogs and cats. Herein, a meta-analysis was contrived to assess the prevalence of Toxocara/Toxascaris in carnivore and human hosts in different regions of Iran from April 1969 to June 2019. METHODS: The available online articles of English (PubMed, Science Direct, Scopus, and Ovid) and Persian (SID, Iran Medex, Magiran, and Iran Doc) databases and also the articles that presented in held parasitology congresses of Iran were involved. RESULTS: The weighted prevalence of Toxocara/Toxascaris in dogs (Canis familiaris) and cats (Felis catus) was 24.2% (95% CI: 18.0–31.0%) and 32.6% (95% CI: 22.6–43.4%), respectively. Also, pooled prevalence in jackal (Canis aureus) and red fox (Vulpes vulpes) was 23.3% (95% CI: 7.7–43.2%) and 69.4% (95% CI: 60.3–77.8%), correspondingly. Weighted mean prevalence of human cases with overall 28 records was 9.3% (95% CI: 6.3–13.1%). The weighted prevalence of Toxocara canis, Toxocara cati, and Toxascaris leonina was represented as 13.8% (95% CI: 9.8–18.3%), 28.5% (95% CI: 20–37.7%) and 14.3% (95% CI: 8.1–22.0%), respectively. CONCLUSION: Our meta-analysis results illustrate a considerable prevalence rate of Toxocara/Toxascaris, particularly in cats and dogs of northern parts of Iran. The presence of suitable animal hosts, optimum climate and close contact of humans and animals would have been the reason for higher seroprevalence rates of human cases in our region. Given the significance clinical outcomes of human Toxocara/Toxascaris, necessary measures should be taken. url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6947998/ doi: 10.1186/s12879-020-4759-8 id: cord-257099-8k28vkgf author: Fan, Jingchun title: The epidemiology of reverse transmission of COVID-19 in Gansu Province, China date: 2020-05-12 words: nan sentences: nan pages: flesch: nan cache: txt: summary: abstract: BACKGROUND: The transmission of COVID-19 is about to come under control within China, however, an emerging challenge to the Chinese authorities is reverse transmission due to COVID-19 patients/carriers evacuating from overseas to China. METHODS: We analysed the epidemiological characteristics of 311 Chinese citizens evacuated from Iran. All confirmed COVID-19 cases amongst the returnees were displayed by the spatial distribution pattern of the extent of COVID-19 infection. RESULTS: Characteristics that differed significantly amongst these returnees compared to the original infected cohorts in Gansu were mean age, occupation and sex. Differences observed between infected patients and non-patients amongst returnees were age, sex, race, occupation, the use of facemasks, and residential situation in Iran. The clinical features that were significantly related to infection were chill, shortness of breath, chest pain and nausea. Spatial distribution pattern analysis indicated that infected returnees had resided within Iranian provinces that had experienced high levels of COVID-19. The spatial distribution of the original homes of these returnees before departure for Iran demonstrated that returnees will largely return to northwest China, to regions that have only experienced low levels of infection within China. CONCLUSION: Blocking the reverse transmission of COVID-19 is critical in preventing a secondary outbreak of COVID-19. url: https://api.elsevier.com/content/article/pii/S1477893920302209 doi: 10.1016/j.tmaid.2020.101741 id: cord-283133-jspfwuqu author: Farangi, Mostafa title: The environmental and economic analysis of grid-connected photovoltaic power systems with silicon solar panels, in accord with the new energy policy in Iran date: 2020-07-01 words: nan sentences: nan pages: flesch: nan cache: txt: summary: abstract: In recent years, authorities in Iran have introduced supporting policies for renewable energy resources but there is no comprehensive and updated survey from this perspective. This work aims to give a comprehensive survey on the country’s background from energy outlook and its prominent policies for renewable energy resources. Due to the high CO(2) emissions alongside with the high solar energy harvesting potential in Iran, We have presented a clear simulation on 20 kW and 1 MW grid-connected photovoltaic (PV) power plants using RETScreen software to determine the environmental and economic aspects based on the net greenhouse gases (GHG) emissions reduction, the annual electricity exported to the grid, the cumulative cash flows, and the payback period for the initial investment. According to this simulation, the annual GHG emissions reduction and the annual electricity exported to the grid for 20 kW and 1 MW PV power plants are 22.06 tCO(2), 1103 tCO(2), 39 MWh, and 1953 MWh, respectively. From the economic outlook, based on the new feed-in tariff for power plants and the supposed initial costs, the payback period for the initial investments are between 3 and 4, and 5 years for 20 kW and 1 MW PV power plants, respectively. url: https://www.ncbi.nlm.nih.gov/pubmed/32367905/ doi: 10.1016/j.energy.2020.117771 id: cord-351941-fgtatt40 author: Ghaffarzadegan, Navid title: Simulation‐based estimation of the early spread of COVID‐19 in Iran: actual versus confirmed cases date: 2020-07-06 words: 9174.0 sentences: 452.0 pages: flesch: 52.0 cache: ./cache/cord-351941-fgtatt40.txt txt: ./txt/cord-351941-fgtatt40.txt summary: Estimates using data up to March 20th, 2020, point to 916,000 (90% UI: 508 K, 1.5 M) cumulative cases and 15,485 (90% UI: 8.4 K, 25.8 K) total deaths, numbers an order of magnitude higher than official statistics. The current paper focuses on using a standard dynamic epidemiological model as a tool for incorporating various sources of data into a unified estimation of the actual trajectory of disease, applying the method to COVID-19 outbreak in Iran. We also use unofficial data points including four observations about the number of Iranian passengers diagnosed with COVID-19 upon arrival in international airports, and three estimates aggregated by healthcare providers in Iran and reported by BBC and Iran International news agencies about total cases of death from COVID-19. We define a likelihood function for change over time (net-inflow) of official reports on cumulative death, recovered and infection assuming they are count events drawn from model-predicted rates (Poisson distribution). abstract: Understanding the state of the COVID‐19 pandemic relies on infection and mortality data. Yet official data may underestimate the actual cases due to limited symptoms and testing capacity. We offer a simulation‐based approach which combines various sources of data to estimate the magnitude of outbreak. Early in the epidemic we applied the method to Iran's case, an epicenter of the pandemic in winter 2020. Estimates using data up to March 20th, 2020, point to 916,000 (90% UI: 508 K, 1.5 M) cumulative cases and 15,485 (90% UI: 8.4 K, 25.8 K) total deaths, numbers an order of magnitude higher than official statistics. Our projections suggest that absent strong sustaining of contact reductions the epidemic may resurface. We also use data and studies from the succeeding months to reflect on the quality of original estimates. Our proposed approach can be used for similar cases elsewhere to provide a more accurate, early, estimate of outbreak state. © 2020 System Dynamics Society url: https://www.ncbi.nlm.nih.gov/pubmed/32834468/ doi: 10.1002/sdr.1655 id: cord-276583-j8bf0eme author: Ghalyanchi Langeroudi, Arash title: Full-length characterization and phylogenetic analysis of hemagglutinin gene of H9N2 virus isolated from broilers in Iran during 1998–2007 date: 2012-01-21 words: nan sentences: nan pages: flesch: nan cache: txt: summary: abstract: H9N2 avian influenza A viruses (AIV) have become panzootic in Eurasia over the last decade and are endemic in Iran since 1998, and inactivated vaccine has been used in chickens to control the disease. The hemagglutinin (HA), one of eight protein-coding genes, plays an important role during the early stage of infection. To study their evolution and zoonotic potential, we conducted an in silico analysis of H9N2 viruses that have infected broiler in Tehran Province, Iran between 1998 and 2007. The complete coding region of HA genes from nine H9N2 subtypes isolated from chicken flocks in Tehran Province during 1998–2007 was amplified and sequenced. Sequence analysis and phylogenetic studies of H9N2 subtype viruses on the basis of data of 9 viruses in this study and 30 selected strains are available in the GenBank. Sequence and phylogenetic analyses revealed a large number of similar substitution mutations and close evolutionary relation among sequences of HA. The isolates possessed two types of amino acid motif –R–S-S-R/G-L- and -R-S-N-R/G-L- at the cleavage site of HA. The results showed that all nine representative H9N2 isolates belong to low pathogenic AIVs since none of the amino acid sequences at the cleavage site of the HA of the isolates possessed the basic motif required for highly pathogenic viruses (R-X-R/K-R). Six out of these nine isolates possessed leucine at position 226, which prevails in the sequences found in human strains. Phylogenetic analysis showed that all our isolates belonged to the G1-like sublineage. Also, these isolates showed some degree of homology with other H9N2 isolates, e.g., 89.46–93.93.39% with qu/HK/G1/97 and 93.39–98.39% with pa/Narita/92A/98. The available evidence indicates that HA genes of H9 influenza virus circulating in Iran during the past years were not well conserved. Our finding emphasizes the importance of reinforcing AIV surveillance, especially after the emergence of high pathogenicity in poultry in Iran. url: https://www.ncbi.nlm.nih.gov/pubmed/32214973/ doi: 10.1007/s00580-012-1405-x id: cord-306925-yt5cscf1 author: Haji-Abdolvahab, Habibbolah title: Prevalence of avian influenza, Newcastle disease, and infectious bronchitis viruses in broiler flocks infected with multifactorial respiratory diseases in Iran, 2015–2016 date: 2018-10-30 words: nan sentences: nan pages: flesch: nan cache: txt: summary: abstract: In this study, the prevalence and spatial distribution of Newcastle disease, infectious bronchitis, and avian influenza have been evaluated in commercial broiler farms in 31 provinces in Iran. In this survey, a total of 233 affected broiler chicken farms were sampled. The infectious bronchitis virus (alone) was detected with highest frequency in 60 farms, and separately or combined with other agents, in 110 farms; Newcastle disease virus, separately, was detected in 28 farms, and in 63 farms separately or combined with other infectious agents; and avian influenza H9N2 was detected in 22 farms separately and in 51 farms separately or concomitant with other infectious agents. The sample tested negative for all H5 serotypes. The results of the present study show that the most prevalent avian viral infectious disease contributing to respiratory syndromes in broiler farms in Iran was infectious bronchitis due to infectious bronchitis virus serotypes variant 2 and 793/B. On the other hand, combined with the alternation of dominant viruses and circulating strains, flocks are exposed to unremitting anamorphic viral infections. Thus, the permanent monitoring of cases that have occurred and the review of vaccination plans of affected flocks every year are some of the necessary measures needed for strategic control of respiratory syndrome in broilers. It is noteworthy that execution of epidemiologic examinations on the cogent factors of prevalence of this syndrome and defeat of vaccination strategy in the flocks is urgent and has to be fulfilled on the definite causes of time. url: https://www.ncbi.nlm.nih.gov/pubmed/30377950/ doi: 10.1007/s11250-018-1743-z id: cord-032716-i6hfj8ca author: Hufbauer, Gary Clyde title: What's new in economic sanctions? date: 2020-09-25 words: nan sentences: nan pages: flesch: nan cache: txt: summary: abstract: nan url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7518878/ doi: 10.1016/j.euroecorev.2020.103572 id: cord-353976-gns5omyb author: Kafieh, Rahele title: COVID-19 in Iran: A Deeper Look Into The Future date: 2020-04-27 words: nan sentences: nan pages: flesch: nan cache: txt: summary: abstract: The novel corona-virus (COVID-19) has led to a pandemic, affecting almost all countries and regions in a few weeks, and therefore a global plan is needed to overcome this battle. Iran has been among the first few countries that has been affected severely, after China, which forced the government to put some restriction and enforce social distancing in majority of the country. In less than 2 months, Iran has more than 80,000 confirmed cases, and more than 5,000 death. Based on the official statistics from Iran's government, the number of daily cases has started to go down recently, but many people believe if the lockdown is lifted without proper social distancing enforcement, there is a possibility for a second wave of COVID-19 cases. In this work, we analyze at the data for the number cases in Iran in the past few weeks, and train a predictive model to estimate the possible future trends for the number of cases in Iran, depending on the government policy in the coming weeks and months. Our analysis may help political leaders and health officials to take proper action toward handling COVID-19 in the coming months. url: https://doi.org/10.1101/2020.04.24.20078477 doi: 10.1101/2020.04.24.20078477 id: cord-328930-5a0z1ryz author: Karatayev, Marat title: Establishing and comparing energy security trends in resource-rich exporting nations (Russia and the Caspian Sea region) date: 2020-10-31 words: nan sentences: nan pages: flesch: nan cache: txt: summary: abstract: Abstract In the international arena, it is often the case that in countries which largely depend on foreign resources, energy security, and its key components i.e. security of energy supply, environment, technology, geopolitical and economic factors, is a subject of concern. However, due to the abundance of fossil fuel resources in resource-rich exporting nations, there is a lack of understanding of the risks around energy security and accordingly often a policy vacuum. Conceptualising energy security from different geopolitical vantage points will allow future concerns around energy supply security, climate change, and regional economic crises to be evaluated. By using policy documents and developing a time series approach and normalized z-scores for a range of comparable metrics this article compares the energy security performance in six Caspian Sea countries individually and collectively. The article results show that Azerbaijan, Iran, Kazakhstan made significant progress in energy security since 1990, while energy security indicators in Russia, Uzbekistan, and Turkmenistan regressed. Iran has a leading position in energy security performance, while Uzbekistan and Turkmenistan have the lowest level of the energy security indicators compare to other region countries. This article both contributes a replicable definition of energy security that can be undertaken for other global regions, and begins to incorporate diversification and renewables development to enhance domestic energy security assessment. url: https://www.sciencedirect.com/science/article/pii/S0301420720300532 doi: 10.1016/j.resourpol.2020.101746 id: cord-263518-6puccigu author: Maarefvand, Masoomeh title: Coronavirus Outbreak and Stress in Iranians date: 2020-06-20 words: nan sentences: nan pages: flesch: nan cache: txt: summary: abstract: Iran has faced one of the worst COVID-19 outbreaks in the world, and no studies to date have examined COVID-19-related stress in the general Iranian population. In this first population-based study, a web-based survey was conducted during the peak of the outbreak to assess stress and its correlates in the Iranian population. A 54-item, valid, and reliable questionnaire, including items on demographic characteristics and past medical history, stress levels, awareness about signs and symptoms of COVID-19, knowledge about at-risk groups and prevention methods, knowledge about transmission methods, trust in sources of information, and availability of facemasks and sanitizers, was deployed via social and mass media networks. A total of 3787 Iranians participated in the study where the majority of the participants were females (67.4%), employed (56.1%), from developed provinces (81.6%), without chronic diseases (66.6%), and with ≥13 years of formal education (87.9%). The mean age of study participants was 34.9 years (range = 12–73), and the average stress score was 3.33 (SD = ±1.02). Stress score was significantly higher for females, those who were 30–39 years old, housewives, those with chronic diseases, individuals who were aware that there is no vaccine to prevent COVID-19, those who could not get facemasks or sanitizers, and individuals with higher knowledge about at-risk groups (p < 0.05). There was a significant correlation of stress scores with knowledge about prevention methods for COVID-19 (r = 0.21, p = 0.01) and trust in sources of information about COVID-19 (r = −0.18, p = 0.01). All of the predictors, except knowledge of two important at-risk groups and education, had a significant effect on stress scores based on a multivariate regression model. The COVID-19 outbreak could increase stress among all population groups, with certain groups at higher risk. In the high-risk groups and based on experience with previous pandemics, interventions are needed to prevent long-term psychological effects. Professional support and family-centered programs should be a part of pandemic mitigation-related policymaking and public health practices. url: https://www.ncbi.nlm.nih.gov/pubmed/32575763/ doi: 10.3390/ijerph17124441 id: cord-248932-i1v2lyd2 author: Madraki, Golshan title: Characterizing and Comparing COVID-19 Misinformation Across Languages, Countries and Platforms date: 2020-10-13 words: nan sentences: nan pages: flesch: nan cache: txt: summary: abstract: Misinformation/disinformation about COVID-19 has been rampant on social media around the world. In this study, we investigate COVID-19 misinformation/ disinformation on social media in multiple languages - Farsi (Persian), Chinese, and English, about multiple countries - Iran, China, and the United States (US), and on multiple platforms such as Twitter, Facebook, Instagram, Weibo, and WhatsApp. Misinformation, especially about a global pandemic, is a global problem yet it is common for studies of COVID-19 misinformation on social media to focus on a single language, like English, a single country, like the US, or a single platform, like Twitter. We utilized opportunistic sampling to compile 200 specific items of viral and yet debunked misinformation across these languages, countries and platforms emerged between January 1 and August 31. We then categorized this collection based both on the topics of the misinformation and the underlying roots of that misinformation. Our multi-cultural and multilingual team observed that the nature of COVID-19 misinformation on social media varied in substantial ways across different languages/countries depending on the cultures, beliefs/religions, popularity of social media, types of platforms, freedom of speech and the power of people versus governments. We observe that politics is at the root of most of the collected misinformation across all three languages in this dataset. We further observe the different impact of government restrictions on platforms and platform restrictions on content in Iran, China, and the US and their impact on a key question of our age: how do we control misinformation without silencing the voices we need to hold governments accountable? url: https://arxiv.org/pdf/2010.06455v2.pdf doi: nan id: cord-340132-t77pab71 author: Mohammadzadeh, Nima title: Iran’s success in controlling the COVID-19 pandemic date: 2020-04-23 words: nan sentences: nan pages: flesch: nan cache: txt: summary: abstract: nan url: https://www.ncbi.nlm.nih.gov/pubmed/32321602/ doi: 10.1017/ice.2020.169 id: cord-269818-ko14wjf7 author: Omidi, Mona title: Lessons to be learned from the prevalence of COVID-19 in Iran date: 2020-05-28 words: nan sentences: nan pages: flesch: nan cache: txt: summary: abstract: nan url: https://doi.org/10.34171/mjiri.34.54 doi: 10.34171/mjiri.34.54 id: cord-348111-fkjmzpuw author: Pishgar, Elahe title: A spatio-temporal geodatabase of mortalities due to respiratory tract diseases in Tehran, Iran between 2008 and 2018: a data note date: 2020-10-07 words: 1457.0 sentences: 95.0 pages: flesch: 51.0 cache: ./cache/cord-348111-fkjmzpuw.txt txt: ./txt/cord-348111-fkjmzpuw.txt summary: title: A spatio-temporal geodatabase of mortalities due to respiratory tract diseases in Tehran, Iran between 2008 and 2018: a data note Mortality rates due to respiratory tract diseases (MRRTDs) follow a spatial pattern and this may suggest a potential link between environmental risk factors and MRRTDs. Spatial analysis of RTDs mortality data in an urban setting can provide new knowledge on spatial variation of potential risk factors for RTDs. This will enable health professionals and urban planners to design tailored interventions. Spatio-temporal analyses of mortality data can provide new knowledge on spatial variation of MRRTDs and potential Open Access BMC Research Notes *Correspondence: kiani.behzad@gmail.com drivers of this variation. Data on 43,176 death events due to RTDs from September 2008 to September 2018 were obtained from the Behesht-e Zahra Organization, a local health department under the supervision of the Tehran Municipality [15] . Data for: mortality due to respiratory tract diseases in Tehran Iran between abstract: OBJECTIVES: Respiratory tract diseases (RTDs) are among the top five leading causes of death worldwide. Mortality rates due to respiratory tract diseases (MRRTDs) follow a spatial pattern and this may suggest a potential link between environmental risk factors and MRRTDs. Spatial analysis of RTDs mortality data in an urban setting can provide new knowledge on spatial variation of potential risk factors for RTDs. This will enable health professionals and urban planners to design tailored interventions. We aim to release the datasets of MRRTDs in the city of Tehran, Iran, between 2008 and 2018. DATA DESCRIPTION: The Research data include four datasets; (a) mortality dataset which includes records of deaths and their attributes (age, gender, date of death and district name where death occurred), (b) population data for 22 districts (age groups with 5 years interval and gender by each district). Furthermore, two spatial datasets about the city are introduced; (c) the digital boundaries of districts and (d) urban suburbs of Tehran. url: https://doi.org/10.1186/s13104-020-05319-4 doi: 10.1186/s13104-020-05319-4 id: cord-303331-xolksoy3 author: Pourghasemi, Hamid Reza title: Assessment of the outbreak risk, mapping and infection behavior of COVID-19: Application of the autoregressive integrated-moving average (ARIMA) and polynomial models date: 2020-07-28 words: nan sentences: nan pages: flesch: nan cache: txt: summary: abstract: Infectious disease outbreaks pose a significant threat to human health worldwide. The outbreak of pandemic coronavirus disease 2019 (COVID-19) has caused a global health emergency. Thus, identification of regions with high risk for COVID-19 outbreak and analyzing the behaviour of the infection is a major priority of the governmental organizations and epidemiologists worldwide. The aims of the present study were to analyze the risk factors of coronavirus outbreak for identifying the areas having high risk of infection and to evaluate the behaviour of infection in Fars Province, Iran. A geographic information system (GIS)-based machine learning algorithm (MLA), support vector machine (SVM), was used for the assessment of the outbreak risk of COVID-19 in Fars Province, Iran whereas the daily observations of infected cases were tested in the—polynomial and the autoregressive integrated moving average (ARIMA) models to examine the patterns of virus infestation in the province and in Iran. The results of the disease outbreak in Iran were compared with the data for Iran and the world. Sixteen effective factors were selected for spatial modelling of outbreak risk. The validation outcome reveals that SVM achieved an AUC value of 0.786 (March 20), 0.799 (March 29), and 86.6 (April 10) that displays a good prediction of outbreak risk change detection. The results of the third-degree polynomial and ARIMA models in the province revealed an increasing trend with an evidence of turning, demonstrating extensive quarantines has been effective. The general trends of virus infestation in Iran and Fars Province were similar, although a more volatile growth of the infected cases is expected in the province. The results of this study might assist better programming COVID-19 disease prevention and control and gaining sorts of predictive capability would have wide-ranging benefits. url: https://www.ncbi.nlm.nih.gov/pubmed/32722716/ doi: 10.1371/journal.pone.0236238 id: cord-342517-bzmhjvr5 author: Rassouli, Maryam title: COVID-19 Management in Iran as One of the Most Affected Countries in the World: Advantages and Weaknesses date: 2020-09-15 words: nan sentences: nan pages: flesch: nan cache: txt: summary: abstract: COVID-19 management is a hot topic due to its extensive spread across the world and the declaration of pandemic status. How a crisis is managed in each country is influenced by several factors, and various strategies are applied in accordance with these factors in order to manage the crisis. Due to the rapid spread and increasing trend of the crisis and the fact that almost more than half of the countries are engaged in this pandemic, it is impossible to apply trial-and-error based strategies. One of the best strategies is to use the experiences of other countries in dealing with COVID-19. This report explores the advantages and weaknesses of the Islamic Republic of Iran in the management of this crisis in regard with political economic and cultural issues, health service coverage, and the transparency of information that can be used as a model for other countries around the world. url: https://www.ncbi.nlm.nih.gov/pubmed/33072688/ doi: 10.3389/fpubh.2020.00510 id: cord-004041-2b2h1xog author: Rezaei, Fatemeh title: Preparedness of community-based organisations in biohazard: reliability and validity of an assessment tool date: 2019-06-27 words: nan sentences: nan pages: flesch: nan cache: txt: summary: abstract: The purpose of this study was to develop a tool for community-based health organisations (CBHOs) to evaluate the preparedness in biohazards concerning epidemics or bioterrorism. We searched concepts on partnerships of CBHOs with health systems in guidelines of the Centers for Disease Control and Prevention and literature. Then, we validated the researcher-made tool by face validity, content validity, exploratory factor analysis (EFA), confirmatory factor analysis (CFA) and criterion validity. Data were collected by sending the tool to 620 CBHOs serving under supervision of Iran’s ministry of health. Opinions of health professionals and stakeholders in CBHOs were used to assess face and content validity. Factor loads in EFA were based on three-factor structure that verified by CFA. We used SPSS V.18 and Mplus7 software for statistical analysis. About 105 health-based CBHOs participated. After conducting face validity and calculating content validity ratio and content validity index, we reached 54 items in the field of planning, training and infrastructure. We conducted construct validity using 105 CBHOs. Three items exchanged between the fields according to factor loads in EFA, and CFA verified the model fit as Comparative Fit Index, Tucker-Lewis index and root mean square error of approximation were 0.921, 0918 and 0.052, respectively. The Cronbach’s of the whole tool was 0.944. Spearman correlation coefficient confirmed criterion validity as coefficient was 0.736. Planning, training and infrastructure fields are the most important aspects of preparedness in health-based CBHOs. Applying the new assessment tool in future studies will show the weaknesses and capabilities of health-based CBHOs in biohazard and clear necessary intervention actions for health authorities. url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6910748/ doi: 10.1136/fmch-2019-000124 id: cord-301720-majpfxqn author: Saadat, Yousef title: Molecular characterization of infectious bronchitis viruses isolated from broiler flocks in Bushehr province, Iran: 2014 - 2015 date: 2017-09-15 words: nan sentences: nan pages: flesch: nan cache: txt: summary: abstract: The aim of this study was to provide information on the molecular characteristic and the phylogenic relationship of infectious bronchitis viruses (IBV) strains in Bushehr province in comparison to other strains reported in the Middle East. Samples were collected from broiler flocks in Bushehr province during 2014 - 2015. These flocks had respiratory problems such as gasping, sneezing and bronchial rales. A number of 135 tracheal swabs were taken from fifteen flocks (nine swabs per flock). Each three swabs collected from each flock were pooled in one tube (finally, we had three tubes for each flock). The samples were subjected to reverse transcription polymerase chain reaction (RT-PCR). The PCR products of positive samples were analyzed by sequencing of a (392 bp) segment of the spike gene and the related results were compared with the other IBV sequences in GenBank database. Samples from twelve farms (80.0%) were found to be positive. The viruses from seven farms (46.6%) were identified as field viruses closely related to variant 2. The viruses from three farms (20.0%) were characterized as Mass type and were related to vaccine strains. Two different IB viruses (variant 2 and Mass) were detected in samples from two farms (13.3%). The variant 2 genotype detected in Bushehr had high similarity to variant 2 reported from the Middle East. These variants displayed homologies ranging from 72.9% to 76.5%, and 78.8% to 80.0% with H120 and 4/91, respectively. It is necessary to design vaccination program of poultry farms using IBV strains circulating in the region. url: https://www.ncbi.nlm.nih.gov/pubmed/29085606/ doi: nan id: cord-347353-ll2pnl81 author: Saberi, M. title: Accounting for underreporting in mathematical modelling of transmission and control of COVID-19 in Iran date: 2020-05-06 words: nan sentences: nan pages: flesch: nan cache: txt: summary: abstract: BACKGROUND: Iran has been the hardest hit country by the outbreak of SARS-CoV-2 in the Middle East with 74,877 confirmed cases and 4,683 deaths as of 15 April 2020. With a relatively high case fatality ratio and limited testing capacity, the number of confirmed cases reported is suspected to suffer from significant under-reporting. Therefore, understanding the transmission dynamics of COVID-19 and assessing the effectiveness of the interventions that have taken place in Iran while accounting for the uncertain level of underreporting is of critical importance. We use a mathematical epidemic model utilizing official confirmed data and estimates of underreporting to understand how transmission in Iran has been changing between February and April 2020. METHODS: We developed a compartmental transmission model to estimate the effective reproduction number and its fluctuations since the beginning of the outbreak in Iran. We associate the variations in the effective reproduction number with a timeline of interventions and national events. The estimation method also accounts for the underreporting due to low case ascertainment by estimating the percentage of symptomatic cases using delay adjusted case fatality ratio based on the distribution of the delay from hospitalization to death. FINDINGS: Our estimates of the effective reproduction number ranged from 0.66 to 1.73 between February and April 2020, with a median of 1.16. We estimate a reduction in the effective reproduction number during this period, from 1.73 (95% CI 1.60-1.87) on 1 March 2020 to 0.69 (95% CI 0.68-0.70) on 15 April 2020, due to various non-pharmaceutical interventions including school closures, a ban on public gatherings including sports and religious events, and full or partial closure of non-essential businesses. Based on these estimates and given that a near complete containment is no longer feasible, it is likely that the outbreak may continue until the end of the 2020 if the current level of physical distancing and interventions continue and no effective vaccination or therapeutic are developed and made widely available. INTERPRETATION: The series of non-pharmaceutical interventions and the public compliance that took place in Iran are found to be effective in slowing down the speed of the spread of COVID-19 within the studied time period. However, we argue that if the impact of underreporting is overlooked, the estimated transmission and control dynamics could mislead the public health decisions, policy makers, and general public especially in the earlier stages of the outbreak. FUNDING: Nil. url: https://doi.org/10.1101/2020.05.02.20087270 doi: 10.1101/2020.05.02.20087270 id: cord-337000-k1qq4qgg author: Sahafizadeh, Ebrahim title: Epidemic curve and reproduction number of COVID-19 in Iran date: 2020-05-18 words: nan sentences: nan pages: flesch: nan cache: txt: summary: abstract: COVID-19 was first reported in Iran on 19 February, 2020. We estimated the initial basic reproduction number to be 4.86. With increasingly stringent public health measures, the effective reproduction number declined to below 1 after 2 months. url: https://www.ncbi.nlm.nih.gov/pubmed/32419024/ doi: 10.1093/jtm/taaa077 id: cord-313904-745u0si8 author: Salimi, Rasoul title: The COVID-19 outbreak in Iran date: 2020-06-11 words: nan sentences: nan pages: flesch: nan cache: txt: summary: abstract: nan url: https://doi.org/10.7189/jogh.10.010365 doi: 10.7189/jogh.10.010365 id: cord-294690-fpjhkb4g author: Sharifi, Hamid title: Estimating the number of COVID-19-related infections, deaths and hospitalizations in Iran under different physical distancing and isolation scenarios: A compartmental mathematical modeling date: 2020-04-25 words: nan sentences: nan pages: flesch: nan cache: txt: summary: abstract: Background: Iran is one of the countries that has been overwhelmed with COVID-19. We aimed to estimate the total number of COVID-19 related infections, deaths, and hospitalizations in Iran under different physical distancing and isolation scenarios. Methods: We developed a Susceptible-Exposed-Infected-Removed (SEIR) model, parameterized to the COVID-19 pandemic in Iran. We used the model to quantify the magnitude of the outbreak in Iran and assess the effectiveness of isolation and physical distancing under five different scenarios (A: 0% isolation, through E: 40% isolation of all infected cases). We used Monte-Carlo simulation to calculate the 95% uncertainty intervals (UI). Findings: Under scenario A, we estimated 5,196,000 (UI 1,753,000 - 10,220,000) infections to happen till mid-June with 966,000 (UI 467,800 - 1,702,000) hospitalizations and 111,000 (UI 53,400 - 200,000) deaths. Successful implantation of scenario E would reduce the number of infections by 90% (i.e. 550,000) and change the epidemic peak from 66,000 on June 9th to 9,400 on March 1st. Scenario E also reduces the hospitalizations by 92% (i.e. 74,500), and deaths by 93% (i.e. 7,800). Interpretation: With no approved vaccination or therapy, we found physical distancing and isolation that includes public awareness and case-finding/isolation of 40% of infected people can reduce the burden of COVID-19 in Iran by 90% by mid-June. url: http://medrxiv.org/cgi/content/short/2020.04.22.20075440v1?rss=1 doi: 10.1101/2020.04.22.20075440 id: cord-271679-94h6rcih author: Sharififar, Simintaj title: Factors affecting hospital response in biological disasters: A qualitative study date: 2020-03-16 words: nan sentences: nan pages: flesch: nan cache: txt: summary: abstract: Background: The fatal pandemics of infectious diseases and the possibility of using microorganisms as biological weapons are both rising worldwide. Hospitals are vital organizations in response to biological disasters and have a crucial role in the treatment of patients. Despite the advances in studies about hospital planning and performance during crises, there are no internationally accepted standards for hospital preparedness and disaster response. Thus, this study was designed to explain the effective factors in hospital performance during biological disasters. Methods: Qualitative content analysis with conventional approach was used in the present study. The setting was Ministry of Health and related hospitals, and other relevant ministries responsible at the time of biologic events in Islamic Republic of Iran (IR of Iran) in 2018. Participants were experts, experienced individuals providing service in the field of biological disaster planning and response, policymakers in the Ministry of Health, and other related organizations and authorities responsible for the accreditation of hospitals in IR of Iran. Data were collected using 12 semi-structured interviews in Persian language. Analysis was performed according to Graneheim method. Results: After analyzing 12 interviews, extraction resulted in 76 common codes, 28 subcategories, and 8 categories, which are as follow: detection; treatment and infection control; coordination, Resources; training and exercises; communication and information system; construction; and planning and assessment. Conclusion: Hospital management in outbreaks of infectious diseases (intentional or unintentional) is complex and requires different actions than during natural disasters. In such disasters, readiness to respond and appropriate action is a multifaceted operation. In IR of Iran, there have been few researches in the field of hospital preparation in biologic events, and the possibility of standardized assessment has be reduced due to lack of key skills in confronting biological events. It is hoped that the aggregated factors in the 8 groups of this study can evaluate hospital performance more coherently. url: https://doi.org/10.34171/mjiri.34.21 doi: 10.34171/mjiri.34.21 id: cord-312784-ykko0al5 author: Takian, Amirhossein title: COVID-19 battle during the toughest sanctions against Iran date: 2020-03-18 words: nan sentences: nan pages: flesch: nan cache: txt: summary: abstract: nan url: https://api.elsevier.com/content/article/pii/S0140673620306681 doi: 10.1016/s0140-6736(20)30668-1 ==== make-pages.sh questions [ERIC WAS HERE] ==== make-pages.sh search /data-disk/reader-compute/reader-cord/bin/make-pages.sh: line 77: /data-disk/reader-compute/reader-cord/tmp/search.htm: No such file or directory Traceback (most recent call last): File "/data-disk/reader-compute/reader-cord/bin/tsv2htm-search.py", line 51, in with open( TEMPLATE, 'r' ) as handle : htm = handle.read() FileNotFoundError: [Errno 2] No such file or directory: '/data-disk/reader-compute/reader-cord/tmp/search.htm' ==== make-pages.sh topic modeling corpus Zipping study carrel