id sid tid token lemma pos cord-284409-xiyeceib 1 1 key key NN cord-284409-xiyeceib 1 2 : : : cord-284409-xiyeceib 2 1 cord-284409-xiyeceib cord-284409-xiyeceib NNP cord-284409-xiyeceib 3 1 authors author NNS cord-284409-xiyeceib 3 2 : : : cord-284409-xiyeceib 3 3 Prabakaran Prabakaran NNP cord-284409-xiyeceib 3 4 , , , cord-284409-xiyeceib 3 5 Ponraj Ponraj NNP cord-284409-xiyeceib 3 6 ; ; : cord-284409-xiyeceib 3 7 Chen Chen NNP cord-284409-xiyeceib 3 8 , , , cord-284409-xiyeceib 3 9 Weizao Weizao NNP cord-284409-xiyeceib 3 10 ; ; : cord-284409-xiyeceib 3 11 Dimitrov Dimitrov NNP cord-284409-xiyeceib 3 12 , , , cord-284409-xiyeceib 3 13 Dimiter Dimiter NNP cord-284409-xiyeceib 3 14 S. S. NNP cord-284409-xiyeceib 3 15 title title NN cord-284409-xiyeceib 3 16 : : : cord-284409-xiyeceib 3 17 The the DT cord-284409-xiyeceib 3 18 Antibody Antibody NNP cord-284409-xiyeceib 3 19 Germline Germline NNP cord-284409-xiyeceib 3 20 / / SYM cord-284409-xiyeceib 3 21 Maturation Maturation NNP cord-284409-xiyeceib 3 22 Hypothesis Hypothesis NNP cord-284409-xiyeceib 3 23 , , , cord-284409-xiyeceib 3 24 Elicitation Elicitation NNP cord-284409-xiyeceib 3 25 of of IN cord-284409-xiyeceib 3 26 Broadly broadly RB cord-284409-xiyeceib 3 27 Neutralizing neutralize VBG cord-284409-xiyeceib 3 28 Antibodies Antibodies NNPS cord-284409-xiyeceib 3 29 Against against IN cord-284409-xiyeceib 3 30 HIV-1 HIV-1 NNP cord-284409-xiyeceib 3 31 and and CC cord-284409-xiyeceib 3 32 Cord Cord NNP cord-284409-xiyeceib 3 33 Blood Blood NNP cord-284409-xiyeceib 3 34 IgM igm NN cord-284409-xiyeceib 3 35 Repertoires repertoire NNS cord-284409-xiyeceib 3 36 date date NN cord-284409-xiyeceib 3 37 : : : cord-284409-xiyeceib 3 38 2014 2014 CD cord-284409-xiyeceib 3 39 - - HYPH cord-284409-xiyeceib 3 40 08 08 CD cord-284409-xiyeceib 3 41 - - HYPH cord-284409-xiyeceib 3 42 28 28 CD cord-284409-xiyeceib 3 43 journal journal NN cord-284409-xiyeceib 3 44 : : : cord-284409-xiyeceib 4 1 Front Front NNP cord-284409-xiyeceib 4 2 Immunol Immunol NNP cord-284409-xiyeceib 4 3 DOI doi NN cord-284409-xiyeceib 4 4 : : : cord-284409-xiyeceib 5 1 10.3389 10.3389 CD cord-284409-xiyeceib 6 1 /fimmu.2014.00398 /fimmu.2014.00398 . cord-284409-xiyeceib 7 1 sha sha NNP cord-284409-xiyeceib 7 2 : : : cord-284409-xiyeceib 7 3 a62bab2887ddd15979d7ef71e48ea7ae3596adf6 a62bab2887ddd15979d7ef71e48ea7ae3596adf6 NNP cord-284409-xiyeceib 7 4 doc_id doc_id CD cord-284409-xiyeceib 7 5 : : : cord-284409-xiyeceib 7 6 284409 284409 CD cord-284409-xiyeceib 7 7 cord_uid cord_uid NNS cord-284409-xiyeceib 7 8 : : : cord-284409-xiyeceib 8 1 xiyeceib xiyeceib NNP cord-284409-xiyeceib 9 1 We -PRON- PRP cord-284409-xiyeceib 9 2 have have VBP cord-284409-xiyeceib 9 3 previously previously RB cord-284409-xiyeceib 9 4 observed observe VBN cord-284409-xiyeceib 9 5 that that IN cord-284409-xiyeceib 9 6 all all DT cord-284409-xiyeceib 9 7 known know VBN cord-284409-xiyeceib 9 8 potent potent JJ cord-284409-xiyeceib 9 9 broadly broadly RB cord-284409-xiyeceib 9 10 neutralizing neutralize VBG cord-284409-xiyeceib 9 11 antibodies antibody NNS cord-284409-xiyeceib 9 12 ( ( -LRB- cord-284409-xiyeceib 9 13 bnAbs bnabs NN cord-284409-xiyeceib 9 14 ) ) -RRB- cord-284409-xiyeceib 9 15 against against IN cord-284409-xiyeceib 9 16 HIV-1 HIV-1 NNP cord-284409-xiyeceib 9 17 are be VBP cord-284409-xiyeceib 9 18 highly highly RB cord-284409-xiyeceib 9 19 divergent divergent JJ cord-284409-xiyeceib 9 20 from from IN cord-284409-xiyeceib 9 21 their -PRON- PRP$ cord-284409-xiyeceib 9 22 putative putative JJ cord-284409-xiyeceib 9 23 germline germline JJ cord-284409-xiyeceib 9 24 predecessors predecessor NNS cord-284409-xiyeceib 9 25 in in IN cord-284409-xiyeceib 9 26 contrast contrast NN cord-284409-xiyeceib 9 27 to to IN cord-284409-xiyeceib 9 28 bnAbs bnabs NN cord-284409-xiyeceib 9 29 against against IN cord-284409-xiyeceib 9 30 viruses virus NNS cord-284409-xiyeceib 9 31 causing cause VBG cord-284409-xiyeceib 9 32 acute acute JJ cord-284409-xiyeceib 9 33 infections infection NNS cord-284409-xiyeceib 9 34 such such JJ cord-284409-xiyeceib 9 35 as as IN cord-284409-xiyeceib 9 36 henipaviruses henipaviruses NNPS cord-284409-xiyeceib 9 37 and and CC cord-284409-xiyeceib 9 38 SARS SARS NNP cord-284409-xiyeceib 9 39 CoV CoV NNP cord-284409-xiyeceib 9 40 , , , cord-284409-xiyeceib 9 41 which which WDT cord-284409-xiyeceib 9 42 are be VBP cord-284409-xiyeceib 9 43 much much RB cord-284409-xiyeceib 9 44 less less RBR cord-284409-xiyeceib 9 45 divergent divergent JJ cord-284409-xiyeceib 9 46 from from IN cord-284409-xiyeceib 9 47 their -PRON- PRP$ cord-284409-xiyeceib 9 48 germline germline JJ cord-284409-xiyeceib 9 49 counterparts counterpart NNS cord-284409-xiyeceib 9 50 . . . cord-284409-xiyeceib 10 1 Consequently consequently RB cord-284409-xiyeceib 10 2 , , , cord-284409-xiyeceib 10 3 we -PRON- PRP cord-284409-xiyeceib 10 4 have have VBP cord-284409-xiyeceib 10 5 hypothesized hypothesize VBN cord-284409-xiyeceib 10 6 that that IN cord-284409-xiyeceib 10 7 germline germline JJ cord-284409-xiyeceib 10 8 antibodies antibody NNS cord-284409-xiyeceib 10 9 may may MD cord-284409-xiyeceib 10 10 not not RB cord-284409-xiyeceib 10 11 bind bind VB cord-284409-xiyeceib 10 12 to to IN cord-284409-xiyeceib 10 13 the the DT cord-284409-xiyeceib 10 14 HIV-1 HIV-1 NNP cord-284409-xiyeceib 10 15 envelope envelope NN cord-284409-xiyeceib 10 16 glycoprotein glycoprotein NN cord-284409-xiyeceib 10 17 ( ( -LRB- cord-284409-xiyeceib 10 18 Env Env NNP cord-284409-xiyeceib 10 19 ) ) -RRB- cord-284409-xiyeceib 10 20 because because IN cord-284409-xiyeceib 10 21 they -PRON- PRP cord-284409-xiyeceib 10 22 are be VBP cord-284409-xiyeceib 10 23 so so RB cord-284409-xiyeceib 10 24 different different JJ cord-284409-xiyeceib 10 25 compared compare VBN cord-284409-xiyeceib 10 26 to to IN cord-284409-xiyeceib 10 27 the the DT cord-284409-xiyeceib 10 28 highly highly RB cord-284409-xiyeceib 10 29 somatically somatically RB cord-284409-xiyeceib 10 30 mutated mutate VBN cord-284409-xiyeceib 10 31 HIV-1-specific HIV-1-specific NNP cord-284409-xiyeceib 10 32 bnAbs bnabs NN cord-284409-xiyeceib 10 33 . . . cord-284409-xiyeceib 11 1 We -PRON- PRP cord-284409-xiyeceib 11 2 have have VBP cord-284409-xiyeceib 11 3 further further RB cord-284409-xiyeceib 11 4 hypothesized hypothesize VBN cord-284409-xiyeceib 11 5 that that IN cord-284409-xiyeceib 11 6 the the DT cord-284409-xiyeceib 11 7 immunogenicity immunogenicity NN cord-284409-xiyeceib 11 8 of of IN cord-284409-xiyeceib 11 9 highly highly RB cord-284409-xiyeceib 11 10 conserved conserve VBN cord-284409-xiyeceib 11 11 epitopes epitope NNS cord-284409-xiyeceib 11 12 on on IN cord-284409-xiyeceib 11 13 the the DT cord-284409-xiyeceib 11 14 HIV-1 HIV-1 NNP cord-284409-xiyeceib 11 15 envelope envelope NN cord-284409-xiyeceib 11 16 glycoproteins glycoprotein NNS cord-284409-xiyeceib 11 17 ( ( -LRB- cord-284409-xiyeceib 11 18 Envs Envs NNP cord-284409-xiyeceib 11 19 ) ) -RRB- cord-284409-xiyeceib 11 20 may may MD cord-284409-xiyeceib 11 21 be be VB cord-284409-xiyeceib 11 22 reduced reduce VBN cord-284409-xiyeceib 11 23 or or CC cord-284409-xiyeceib 11 24 eliminated eliminate VBN cord-284409-xiyeceib 11 25 by by IN cord-284409-xiyeceib 11 26 their -PRON- PRP$ cord-284409-xiyeceib 11 27 very very RB cord-284409-xiyeceib 11 28 weak weak JJ cord-284409-xiyeceib 11 29 or or CC cord-284409-xiyeceib 11 30 absent absent JJ cord-284409-xiyeceib 11 31 interactions interaction NNS cord-284409-xiyeceib 11 32 with with IN cord-284409-xiyeceib 11 33 germline germline JJ cord-284409-xiyeceib 11 34 antibodies antibody NNS cord-284409-xiyeceib 11 35 and and CC cord-284409-xiyeceib 11 36 immune immune JJ cord-284409-xiyeceib 11 37 responses response NNS cord-284409-xiyeceib 11 38 leading lead VBG cord-284409-xiyeceib 11 39 to to IN cord-284409-xiyeceib 11 40 the the DT cord-284409-xiyeceib 11 41 elicitation elicitation NN cord-284409-xiyeceib 11 42 of of IN cord-284409-xiyeceib 11 43 bnAbs bnAbs NNP cord-284409-xiyeceib 11 44 may may MD cord-284409-xiyeceib 11 45 not not RB cord-284409-xiyeceib 11 46 be be VB cord-284409-xiyeceib 11 47 initiated initiate VBN cord-284409-xiyeceib 11 48 and/or and/or CC cord-284409-xiyeceib 11 49 sustained sustained JJ cord-284409-xiyeceib 11 50 . . . cord-284409-xiyeceib 12 1 Even even RB cord-284409-xiyeceib 12 2 if if IN cord-284409-xiyeceib 12 3 such such JJ cord-284409-xiyeceib 12 4 responses response NNS cord-284409-xiyeceib 12 5 are be VBP cord-284409-xiyeceib 12 6 initiated initiate VBN cord-284409-xiyeceib 12 7 , , , cord-284409-xiyeceib 12 8 the the DT cord-284409-xiyeceib 12 9 maturation maturation NN cord-284409-xiyeceib 12 10 pathways pathway NNS cord-284409-xiyeceib 12 11 are be VBP cord-284409-xiyeceib 12 12 so so RB cord-284409-xiyeceib 12 13 extraordinarily extraordinarily RB cord-284409-xiyeceib 12 14 complex complex JJ cord-284409-xiyeceib 12 15 that that IN cord-284409-xiyeceib 12 16 prolonged prolong VBN cord-284409-xiyeceib 12 17 periods period NNS cord-284409-xiyeceib 12 18 of of IN cord-284409-xiyeceib 12 19 time time NN cord-284409-xiyeceib 12 20 may may MD cord-284409-xiyeceib 12 21 be be VB cord-284409-xiyeceib 12 22 required require VBN cord-284409-xiyeceib 12 23 for for IN cord-284409-xiyeceib 12 24 elicitation elicitation NN cord-284409-xiyeceib 12 25 of of IN cord-284409-xiyeceib 12 26 bnAbs bnabs NN cord-284409-xiyeceib 12 27 with with IN cord-284409-xiyeceib 12 28 defined define VBN cord-284409-xiyeceib 12 29 unique unique JJ cord-284409-xiyeceib 12 30 sequences sequence NNS cord-284409-xiyeceib 12 31 . . . cord-284409-xiyeceib 13 1 We -PRON- PRP cord-284409-xiyeceib 13 2 provided provide VBD cord-284409-xiyeceib 13 3 the the DT cord-284409-xiyeceib 13 4 initial initial JJ cord-284409-xiyeceib 13 5 evidence evidence NN cord-284409-xiyeceib 13 6 supporting support VBG cord-284409-xiyeceib 13 7 this this DT cord-284409-xiyeceib 13 8 antibody antibody NN cord-284409-xiyeceib 13 9 germline germline NN cord-284409-xiyeceib 13 10 / / SYM cord-284409-xiyeceib 13 11 maturation maturation NN cord-284409-xiyeceib 13 12 hypothesis hypothesis NN cord-284409-xiyeceib 13 13 , , , cord-284409-xiyeceib 13 14 which which WDT cord-284409-xiyeceib 13 15 prompted prompt VBD cord-284409-xiyeceib 13 16 a a DT cord-284409-xiyeceib 13 17 number number NN cord-284409-xiyeceib 13 18 of of IN cord-284409-xiyeceib 13 19 studies study NNS cord-284409-xiyeceib 13 20 to to TO cord-284409-xiyeceib 13 21 design design VB cord-284409-xiyeceib 13 22 vaccine vaccine NN cord-284409-xiyeceib 13 23 immunogens immunogen NNS cord-284409-xiyeceib 13 24 that that WDT cord-284409-xiyeceib 13 25 could could MD cord-284409-xiyeceib 13 26 bind bind VB cord-284409-xiyeceib 13 27 putative putative JJ cord-284409-xiyeceib 13 28 germline germline JJ cord-284409-xiyeceib 13 29 predecessors predecessor NNS cord-284409-xiyeceib 13 30 of of IN cord-284409-xiyeceib 13 31 known know VBN cord-284409-xiyeceib 13 32 bnAbs bnabs NN cord-284409-xiyeceib 13 33 and and CC cord-284409-xiyeceib 13 34 to to TO cord-284409-xiyeceib 13 35 explore explore VB cord-284409-xiyeceib 13 36 complex complex JJ cord-284409-xiyeceib 13 37 B b NN cord-284409-xiyeceib 13 38 cell cell NN cord-284409-xiyeceib 13 39 lineages lineage NNS cord-284409-xiyeceib 13 40 . . . cord-284409-xiyeceib 14 1 However however RB cord-284409-xiyeceib 14 2 , , , cord-284409-xiyeceib 14 3 guiding guide VBG cord-284409-xiyeceib 14 4 the the DT cord-284409-xiyeceib 14 5 immune immune JJ cord-284409-xiyeceib 14 6 system system NN cord-284409-xiyeceib 14 7 through through IN cord-284409-xiyeceib 14 8 the the DT cord-284409-xiyeceib 14 9 exceptionally exceptionally RB cord-284409-xiyeceib 14 10 complex complex JJ cord-284409-xiyeceib 14 11 antibody antibody NN cord-284409-xiyeceib 14 12 maturation maturation NN cord-284409-xiyeceib 14 13 pathways pathway NNS cord-284409-xiyeceib 14 14 to to TO cord-284409-xiyeceib 14 15 elicit elicit VB cord-284409-xiyeceib 14 16 known know VBN cord-284409-xiyeceib 14 17 bnAbs bnabs NN cord-284409-xiyeceib 14 18 remains remain VBZ cord-284409-xiyeceib 14 19 a a DT cord-284409-xiyeceib 14 20 major major JJ cord-284409-xiyeceib 14 21 challenge challenge NN cord-284409-xiyeceib 14 22 . . . cord-284409-xiyeceib 15 1 Here here RB cord-284409-xiyeceib 15 2 , , , cord-284409-xiyeceib 15 3 we -PRON- PRP cord-284409-xiyeceib 15 4 discuss discuss VBP cord-284409-xiyeceib 15 5 studies study NNS cord-284409-xiyeceib 15 6 exploring explore VBG cord-284409-xiyeceib 15 7 the the DT cord-284409-xiyeceib 15 8 antibody antibody NN cord-284409-xiyeceib 15 9 germline germline NN cord-284409-xiyeceib 15 10 / / SYM cord-284409-xiyeceib 15 11 maturation maturation NN cord-284409-xiyeceib 15 12 hypothesis hypothesis NN cord-284409-xiyeceib 15 13 as as IN cord-284409-xiyeceib 15 14 related relate VBN cord-284409-xiyeceib 15 15 to to IN cord-284409-xiyeceib 15 16 elicitation elicitation NN cord-284409-xiyeceib 15 17 of of IN cord-284409-xiyeceib 15 18 bnAbs bnabs NN cord-284409-xiyeceib 15 19 against against IN cord-284409-xiyeceib 15 20 HIV-1 HIV-1 NNP cord-284409-xiyeceib 15 21 and and CC cord-284409-xiyeceib 15 22 present present VB cord-284409-xiyeceib 15 23 our -PRON- PRP$ cord-284409-xiyeceib 15 24 recent recent JJ cord-284409-xiyeceib 15 25 data datum NNS cord-284409-xiyeceib 15 26 demonstrating demonstrate VBG cord-284409-xiyeceib 15 27 the the DT cord-284409-xiyeceib 15 28 existence existence NN cord-284409-xiyeceib 15 29 of of IN cord-284409-xiyeceib 15 30 germline germline NN cord-284409-xiyeceib 15 31 - - HYPH cord-284409-xiyeceib 15 32 like like JJ cord-284409-xiyeceib 15 33 precursors precursor NNS cord-284409-xiyeceib 15 34 of of IN cord-284409-xiyeceib 15 35 VRC01 VRC01 NNP cord-284409-xiyeceib 15 36 antibodies antibody NNS cord-284409-xiyeceib 15 37 in in IN cord-284409-xiyeceib 15 38 a a DT cord-284409-xiyeceib 15 39 human human JJ cord-284409-xiyeceib 15 40 cord cord NN cord-284409-xiyeceib 15 41 blood blood NN cord-284409-xiyeceib 15 42 IgM IgM NNP cord-284409-xiyeceib 15 43 library library NNP cord-284409-xiyeceib 15 44 . . . cord-284409-xiyeceib 16 1 Elicitation Elicitation NNP cord-284409-xiyeceib 16 2 of of IN cord-284409-xiyeceib 16 3 broadly broadly RB cord-284409-xiyeceib 16 4 neutralizing neutralize VBG cord-284409-xiyeceib 16 5 antibodies antibody NNS cord-284409-xiyeceib 16 6 ( ( -LRB- cord-284409-xiyeceib 16 7 bnAbs bnabs NN cord-284409-xiyeceib 16 8 ) ) -RRB- cord-284409-xiyeceib 16 9 targeting target VBG cord-284409-xiyeceib 16 10 the the DT cord-284409-xiyeceib 16 11 HIV-1 HIV-1 NNP cord-284409-xiyeceib 16 12 envelope envelope NN cord-284409-xiyeceib 16 13 glycoproteins glycoprotein NNS cord-284409-xiyeceib 16 14 ( ( -LRB- cord-284409-xiyeceib 16 15 Envs Envs NNP cord-284409-xiyeceib 16 16 ) ) -RRB- cord-284409-xiyeceib 16 17 , , , cord-284409-xiyeceib 16 18 the the DT cord-284409-xiyeceib 16 19 key key NN cord-284409-xiyeceib 16 20 to to IN cord-284409-xiyeceib 16 21 an an DT cord-284409-xiyeceib 16 22 effective effective JJ cord-284409-xiyeceib 16 23 HIV-1 HIV-1 NNP cord-284409-xiyeceib 16 24 vaccine vaccine NN cord-284409-xiyeceib 16 25 , , , cord-284409-xiyeceib 16 26 remains remain VBZ cord-284409-xiyeceib 16 27 elusive elusive JJ cord-284409-xiyeceib 16 28 . . . cord-284409-xiyeceib 17 1 Previous previous JJ cord-284409-xiyeceib 17 2 studies study NNS cord-284409-xiyeceib 17 3 have have VBP cord-284409-xiyeceib 17 4 demonstrated demonstrate VBN cord-284409-xiyeceib 17 5 several several JJ cord-284409-xiyeceib 17 6 properties property NNS cord-284409-xiyeceib 17 7 of of IN cord-284409-xiyeceib 17 8 the the DT cord-284409-xiyeceib 17 9 HIV-1 HIV-1 NNP cord-284409-xiyeceib 17 10 Envs Envs NNP cord-284409-xiyeceib 17 11 that that WDT cord-284409-xiyeceib 17 12 could could MD cord-284409-xiyeceib 17 13 limit limit VB cord-284409-xiyeceib 17 14 their -PRON- PRP$ cord-284409-xiyeceib 17 15 ability ability NN cord-284409-xiyeceib 17 16 to to TO cord-284409-xiyeceib 17 17 elicit elicit VB cord-284409-xiyeceib 17 18 bnAbs bnabs NN cord-284409-xiyeceib 17 19 . . . cord-284409-xiyeceib 18 1 These these DT cord-284409-xiyeceib 18 2 include include VBP cord-284409-xiyeceib 18 3 protection protection NN cord-284409-xiyeceib 18 4 of of IN cord-284409-xiyeceib 18 5 the the DT cord-284409-xiyeceib 18 6 conserved conserve VBN cord-284409-xiyeceib 18 7 structures structure NNS cord-284409-xiyeceib 18 8 by by IN cord-284409-xiyeceib 18 9 variable variable JJ cord-284409-xiyeceib 18 10 loops loop NNS cord-284409-xiyeceib 18 11 ( ( -LRB- cord-284409-xiyeceib 18 12 1 1 CD cord-284409-xiyeceib 18 13 ) ) -RRB- cord-284409-xiyeceib 18 14 ( ( -LRB- cord-284409-xiyeceib 18 15 2 2 LS cord-284409-xiyeceib 18 16 ) ) -RRB- cord-284409-xiyeceib 18 17 ( ( -LRB- cord-284409-xiyeceib 18 18 3 3 LS cord-284409-xiyeceib 18 19 ) ) -RRB- cord-284409-xiyeceib 18 20 , , , cord-284409-xiyeceib 18 21 remarkable remarkable JJ cord-284409-xiyeceib 18 22 genetic genetic JJ cord-284409-xiyeceib 18 23 diversity diversity NN cord-284409-xiyeceib 18 24 ( ( -LRB- cord-284409-xiyeceib 18 25 4 4 CD cord-284409-xiyeceib 18 26 ) ) -RRB- cord-284409-xiyeceib 18 27 , , , cord-284409-xiyeceib 18 28 a a DT cord-284409-xiyeceib 18 29 glycan glycan NN cord-284409-xiyeceib 18 30 shield shield NN cord-284409-xiyeceib 18 31 ( ( -LRB- cord-284409-xiyeceib 18 32 5 5 CD cord-284409-xiyeceib 18 33 ) ) -RRB- cord-284409-xiyeceib 18 34 , , , cord-284409-xiyeceib 18 35 steric steric JJ cord-284409-xiyeceib 18 36 occlusion occlusion NN cord-284409-xiyeceib 18 37 ( ( -LRB- cord-284409-xiyeceib 18 38 6 6 CD cord-284409-xiyeceib 18 39 ) ) -RRB- cord-284409-xiyeceib 18 40 , , , cord-284409-xiyeceib 18 41 and and CC cord-284409-xiyeceib 18 42 conformational conformational JJ cord-284409-xiyeceib 18 43 masking masking NN cord-284409-xiyeceib 18 44 ( ( -LRB- cord-284409-xiyeceib 18 45 7 7 CD cord-284409-xiyeceib 18 46 ) ) -RRB- cord-284409-xiyeceib 18 47 . . . cord-284409-xiyeceib 19 1 Until until IN cord-284409-xiyeceib 19 2 6 6 CD cord-284409-xiyeceib 19 3 years year NNS cord-284409-xiyeceib 19 4 ago ago RB cord-284409-xiyeceib 19 5 , , , cord-284409-xiyeceib 19 6 only only RB cord-284409-xiyeceib 19 7 a a DT cord-284409-xiyeceib 19 8 handful handful NN cord-284409-xiyeceib 19 9 of of IN cord-284409-xiyeceib 19 10 bnAbs bnabs NN cord-284409-xiyeceib 19 11 , , , cord-284409-xiyeceib 19 12 including include VBG cord-284409-xiyeceib 19 13 b12 b12 NN cord-284409-xiyeceib 19 14 , , , cord-284409-xiyeceib 19 15 2G12 2g12 CD cord-284409-xiyeceib 19 16 , , , cord-284409-xiyeceib 19 17 2F5 2f5 CD cord-284409-xiyeceib 19 18 , , , cord-284409-xiyeceib 19 19 and and CC cord-284409-xiyeceib 19 20 4E10 4e10 CD cord-284409-xiyeceib 19 21 , , , cord-284409-xiyeceib 19 22 were be VBD cord-284409-xiyeceib 19 23 known know VBN cord-284409-xiyeceib 19 24 . . . cord-284409-xiyeceib 20 1 Although although IN cord-284409-xiyeceib 20 2 the the DT cord-284409-xiyeceib 20 3 structural structural JJ cord-284409-xiyeceib 20 4 and and CC cord-284409-xiyeceib 20 5 functional functional JJ cord-284409-xiyeceib 20 6 studies study NNS cord-284409-xiyeceib 20 7 of of IN cord-284409-xiyeceib 20 8 those those DT cord-284409-xiyeceib 20 9 bnAbs bnabs NN cord-284409-xiyeceib 20 10 revealed reveal VBD cord-284409-xiyeceib 20 11 some some DT cord-284409-xiyeceib 20 12 important important JJ cord-284409-xiyeceib 20 13 neutralization neutralization NN cord-284409-xiyeceib 20 14 epitopes epitope NNS cord-284409-xiyeceib 20 15 ( ( -LRB- cord-284409-xiyeceib 20 16 8) 8) NNP cord-284409-xiyeceib 20 17 , , , cord-284409-xiyeceib 20 18 such such JJ cord-284409-xiyeceib 20 19 bnAbs bnabs NN cord-284409-xiyeceib 20 20 have have VBP cord-284409-xiyeceib 20 21 not not RB cord-284409-xiyeceib 20 22 been be VBN cord-284409-xiyeceib 20 23 successfully successfully RB cord-284409-xiyeceib 20 24 elicited elicit VBN cord-284409-xiyeceib 20 25 by by IN cord-284409-xiyeceib 20 26 any any DT cord-284409-xiyeceib 20 27 vaccination vaccination NN cord-284409-xiyeceib 20 28 approach approach NN cord-284409-xiyeceib 20 29 . . . cord-284409-xiyeceib 21 1 In in IN cord-284409-xiyeceib 21 2 2007 2007 CD cord-284409-xiyeceib 21 3 , , , cord-284409-xiyeceib 21 4 we -PRON- PRP cord-284409-xiyeceib 21 5 first first RB cord-284409-xiyeceib 21 6 noted note VBD cord-284409-xiyeceib 21 7 that that IN cord-284409-xiyeceib 21 8 in in IN cord-284409-xiyeceib 21 9 HIV-1 HIV-1 NNP cord-284409-xiyeceib 21 10 specific specific JJ cord-284409-xiyeceib 21 11 bnAbs bnabs NN cord-284409-xiyeceib 21 12 the the DT cord-284409-xiyeceib 21 13 number number NN cord-284409-xiyeceib 21 14 of of IN cord-284409-xiyeceib 21 15 amino amino NN cord-284409-xiyeceib 21 16 acid acid NN cord-284409-xiyeceib 21 17 mutations mutation NNS cord-284409-xiyeceib 21 18 from from IN cord-284409-xiyeceib 21 19 their -PRON- PRP$ cord-284409-xiyeceib 21 20 closest close JJS cord-284409-xiyeceib 21 21 corresponding corresponding JJ cord-284409-xiyeceib 21 22 germline germline NN cord-284409-xiyeceib 21 23 sequences sequence NNS cord-284409-xiyeceib 21 24 was be VBD cord-284409-xiyeceib 21 25 significantly significantly RB cord-284409-xiyeceib 21 26 higher high JJR cord-284409-xiyeceib 21 27 than than IN cord-284409-xiyeceib 21 28 that that DT cord-284409-xiyeceib 21 29 of of IN cord-284409-xiyeceib 21 30 bnAbs bnabs NN cord-284409-xiyeceib 21 31 against against IN cord-284409-xiyeceib 21 32 the the DT cord-284409-xiyeceib 21 33 SARS SARS NNP cord-284409-xiyeceib 21 34 CoV cov NN cord-284409-xiyeceib 21 35 coronavirus coronavirus NNP cord-284409-xiyeceib 21 36 , , , cord-284409-xiyeceib 21 37 and and CC cord-284409-xiyeceib 21 38 Hendra Hendra NNP cord-284409-xiyeceib 21 39 and and CC cord-284409-xiyeceib 21 40 Nipah Nipah NNP cord-284409-xiyeceib 21 41 viruses virus NNS cord-284409-xiyeceib 21 42 , , , cord-284409-xiyeceib 21 43 which which WDT cord-284409-xiyeceib 21 44 cause cause VBP cord-284409-xiyeceib 21 45 self self NN cord-284409-xiyeceib 21 46 - - HYPH cord-284409-xiyeceib 21 47 limiting limit VBG cord-284409-xiyeceib 21 48 acute acute JJ cord-284409-xiyeceib 21 49 infections infection NNS cord-284409-xiyeceib 21 50 ( ( -LRB- cord-284409-xiyeceib 21 51 9 9 CD cord-284409-xiyeceib 21 52 ) ) -RRB- cord-284409-xiyeceib 21 53 . . . cord-284409-xiyeceib 22 1 Using use VBG cord-284409-xiyeceib 22 2 a a DT cord-284409-xiyeceib 22 3 large large JJ cord-284409-xiyeceib 22 4 nonimmune nonimmune NNP cord-284409-xiyeceib 22 5 IgM IgM NNP cord-284409-xiyeceib 22 6 library library NNP cord-284409-xiyeceib 22 7 , , , cord-284409-xiyeceib 22 8 we -PRON- PRP cord-284409-xiyeceib 22 9 identified identify VBD cord-284409-xiyeceib 22 10 several several JJ cord-284409-xiyeceib 22 11 HIV-1 HIV-1 NNP cord-284409-xiyeceib 22 12 Env Env NNP cord-284409-xiyeceib 22 13 specific specific JJ cord-284409-xiyeceib 22 14 antibodies antibody NNS cord-284409-xiyeceib 22 15 and and CC cord-284409-xiyeceib 22 16 found find VBD cord-284409-xiyeceib 22 17 that that IN cord-284409-xiyeceib 22 18 they -PRON- PRP cord-284409-xiyeceib 22 19 had have VBD cord-284409-xiyeceib 22 20 fewer few JJR cord-284409-xiyeceib 22 21 somatic somatic JJ cord-284409-xiyeceib 22 22 mutations mutation NNS cord-284409-xiyeceib 22 23 than than IN cord-284409-xiyeceib 22 24 the the DT cord-284409-xiyeceib 22 25 HIV-1 HIV-1 NNP cord-284409-xiyeceib 22 26 bnAbs bnAbs NNP cord-284409-xiyeceib 22 27 , , , cord-284409-xiyeceib 22 28 as as RB cord-284409-xiyeceib 22 29 well well RB cord-284409-xiyeceib 22 30 as as IN cord-284409-xiyeceib 22 31 limited limit VBN cord-284409-xiyeceib 22 32 neutralizing neutralize VBG cord-284409-xiyeceib 22 33 activity activity NN cord-284409-xiyeceib 22 34 ( ( -LRB- cord-284409-xiyeceib 22 35 9 9 CD cord-284409-xiyeceib 22 36 ) ) -RRB- cord-284409-xiyeceib 22 37 . . . cord-284409-xiyeceib 23 1 These these DT cord-284409-xiyeceib 23 2 findings finding NNS cord-284409-xiyeceib 23 3 indicated indicate VBD cord-284409-xiyeceib 23 4 that that IN cord-284409-xiyeceib 23 5 elicitation elicitation NN cord-284409-xiyeceib 23 6 of of IN cord-284409-xiyeceib 23 7 HIV-1 HIV-1 NNP cord-284409-xiyeceib 23 8 bnAbs bnAbs NNP cord-284409-xiyeceib 23 9 would would MD cord-284409-xiyeceib 23 10 require require VB cord-284409-xiyeceib 23 11 far far RB cord-284409-xiyeceib 23 12 more more RBR cord-284409-xiyeceib 23 13 extensive extensive JJ cord-284409-xiyeceib 23 14 maturation maturation NN cord-284409-xiyeceib 23 15 processes process NNS cord-284409-xiyeceib 23 16 than than IN cord-284409-xiyeceib 23 17 those those DT cord-284409-xiyeceib 23 18 needed need VBN cord-284409-xiyeceib 23 19 to to TO cord-284409-xiyeceib 23 20 generate generate VB cord-284409-xiyeceib 23 21 the the DT cord-284409-xiyeceib 23 22 bnAbs bnabs NN cord-284409-xiyeceib 23 23 against against IN cord-284409-xiyeceib 23 24 the the DT cord-284409-xiyeceib 23 25 SARS SARS NNP cord-284409-xiyeceib 23 26 CoV CoV NNP cord-284409-xiyeceib 23 27 and and CC cord-284409-xiyeceib 23 28 henipaviruses henipaviruse NNS cord-284409-xiyeceib 23 29 . . . cord-284409-xiyeceib 24 1 So so RB cord-284409-xiyeceib 24 2 , , , cord-284409-xiyeceib 24 3 we -PRON- PRP cord-284409-xiyeceib 24 4 have have VBP cord-284409-xiyeceib 24 5 suggested suggest VBN cord-284409-xiyeceib 24 6 that that IN cord-284409-xiyeceib 24 7 the the DT cord-284409-xiyeceib 24 8 difficulty difficulty NN cord-284409-xiyeceib 24 9 of of IN cord-284409-xiyeceib 24 10 eliciting elicit VBG cord-284409-xiyeceib 24 11 these these DT cord-284409-xiyeceib 24 12 bnAbs bnabs NN cord-284409-xiyeceib 24 13 may may MD cord-284409-xiyeceib 24 14 be be VB cord-284409-xiyeceib 24 15 due due JJ cord-284409-xiyeceib 24 16 , , , cord-284409-xiyeceib 24 17 at at IN cord-284409-xiyeceib 24 18 least least JJS cord-284409-xiyeceib 24 19 in in IN cord-284409-xiyeceib 24 20 part part NN cord-284409-xiyeceib 24 21 , , , cord-284409-xiyeceib 24 22 to to IN cord-284409-xiyeceib 24 23 the the DT cord-284409-xiyeceib 24 24 complex complex JJ cord-284409-xiyeceib 24 25 and and CC cord-284409-xiyeceib 24 26 prolonged prolonged JJ cord-284409-xiyeceib 24 27 maturation maturation NN cord-284409-xiyeceib 24 28 pathways pathway NNS cord-284409-xiyeceib 24 29 required require VBN cord-284409-xiyeceib 24 30 for for IN cord-284409-xiyeceib 24 31 the the DT cord-284409-xiyeceib 24 32 development development NN cord-284409-xiyeceib 24 33 of of IN cord-284409-xiyeceib 24 34 bnAbs bnAbs NNP cord-284409-xiyeceib 24 35 against against IN cord-284409-xiyeceib 24 36 the the DT cord-284409-xiyeceib 24 37 HIV-1 HIV-1 NNP cord-284409-xiyeceib 24 38 , , , cord-284409-xiyeceib 24 39 which which WDT cord-284409-xiyeceib 24 40 can can MD cord-284409-xiyeceib 24 41 take take VB cord-284409-xiyeceib 24 42 long long JJ cord-284409-xiyeceib 24 43 time time NN cord-284409-xiyeceib 24 44 ( ( -LRB- cord-284409-xiyeceib 24 45 10 10 CD cord-284409-xiyeceib 24 46 ) ) -RRB- cord-284409-xiyeceib 24 47 . . . cord-284409-xiyeceib 25 1 We -PRON- PRP cord-284409-xiyeceib 25 2 thus thus RB cord-284409-xiyeceib 25 3 speculated speculate VBD cord-284409-xiyeceib 25 4 that that IN cord-284409-xiyeceib 25 5 this this DT cord-284409-xiyeceib 25 6 may may MD cord-284409-xiyeceib 25 7 represent represent VB cord-284409-xiyeceib 25 8 another another DT cord-284409-xiyeceib 25 9 significant significant JJ cord-284409-xiyeceib 25 10 challenge challenge NN cord-284409-xiyeceib 25 11 in in IN cord-284409-xiyeceib 25 12 the the DT cord-284409-xiyeceib 25 13 development development NN cord-284409-xiyeceib 25 14 of of IN cord-284409-xiyeceib 25 15 effective effective JJ cord-284409-xiyeceib 25 16 HIV-1 HIV-1 NNP cord-284409-xiyeceib 25 17 vaccines vaccine NNS cord-284409-xiyeceib 25 18 . . . cord-284409-xiyeceib 26 1 We -PRON- PRP cord-284409-xiyeceib 26 2 quantified quantify VBD cord-284409-xiyeceib 26 3 the the DT cord-284409-xiyeceib 26 4 number number NN cord-284409-xiyeceib 26 5 of of IN cord-284409-xiyeceib 26 6 mutations mutation NNS cord-284409-xiyeceib 26 7 in in IN cord-284409-xiyeceib 26 8 human human JJ cord-284409-xiyeceib 26 9 monoclonal monoclonal JJ cord-284409-xiyeceib 26 10 antibodies antibody NNS cord-284409-xiyeceib 26 11 ( ( -LRB- cord-284409-xiyeceib 26 12 mAbs mAbs NNP cord-284409-xiyeceib 26 13 ) ) -RRB- cord-284409-xiyeceib 26 14 that that IN cord-284409-xiyeceib 26 15 we -PRON- PRP cord-284409-xiyeceib 26 16 selected select VBD cord-284409-xiyeceib 26 17 from from IN cord-284409-xiyeceib 26 18 phage phage NN cord-284409-xiyeceib 26 19 libraries library NNS cord-284409-xiyeceib 26 20 generated generate VBN cord-284409-xiyeceib 26 21 from from IN cord-284409-xiyeceib 26 22 an an DT cord-284409-xiyeceib 26 23 HIV-1-infected hiv-1-infecte VBN cord-284409-xiyeceib 26 24 patient patient NN cord-284409-xiyeceib 26 25 with with IN cord-284409-xiyeceib 26 26 a a DT cord-284409-xiyeceib 26 27 known know VBN cord-284409-xiyeceib 26 28 time time NN cord-284409-xiyeceib 26 29 of of IN cord-284409-xiyeceib 26 30 infection infection NN cord-284409-xiyeceib 26 31 ( ( -LRB- cord-284409-xiyeceib 26 32 10 10 CD cord-284409-xiyeceib 26 33 ) ) -RRB- cord-284409-xiyeceib 26 34 . . . cord-284409-xiyeceib 27 1 We -PRON- PRP cord-284409-xiyeceib 27 2 calculated calculate VBD cord-284409-xiyeceib 27 3 the the DT cord-284409-xiyeceib 27 4 number number NN cord-284409-xiyeceib 27 5 of of IN cord-284409-xiyeceib 27 6 amino amino NN cord-284409-xiyeceib 27 7 acid acid NN cord-284409-xiyeceib 27 8 mutations mutation NNS cord-284409-xiyeceib 27 9 per per IN cord-284409-xiyeceib 27 10 heavy heavy JJ cord-284409-xiyeceib 27 11 chain chain NN cord-284409-xiyeceib 27 12 V v NN cord-284409-xiyeceib 27 13 gene gene NN cord-284409-xiyeceib 27 14 , , , cord-284409-xiyeceib 27 15 and and CC cord-284409-xiyeceib 27 16 defined define VBD cord-284409-xiyeceib 27 17 it -PRON- PRP cord-284409-xiyeceib 27 18 as as IN cord-284409-xiyeceib 27 19 antibody antibody NN cord-284409-xiyeceib 27 20 somatic somatic JJ cord-284409-xiyeceib 27 21 mutational mutational JJ cord-284409-xiyeceib 27 22 diversification diversification NN cord-284409-xiyeceib 27 23 ( ( -LRB- cord-284409-xiyeceib 27 24 ASMD ASMD NNP cord-284409-xiyeceib 27 25 ) ) -RRB- cord-284409-xiyeceib 27 26 . . . cord-284409-xiyeceib 28 1 We -PRON- PRP cord-284409-xiyeceib 28 2 compared compare VBD cord-284409-xiyeceib 28 3 the the DT cord-284409-xiyeceib 28 4 extent extent NN cord-284409-xiyeceib 28 5 and and CC cord-284409-xiyeceib 28 6 dynamics dynamic NNS cord-284409-xiyeceib 28 7 of of IN cord-284409-xiyeceib 28 8 the the DT cord-284409-xiyeceib 28 9 ASMD ASMD NNP cord-284409-xiyeceib 28 10 between between IN cord-284409-xiyeceib 28 11 HIV-1-specific HIV-1-specific NNP cord-284409-xiyeceib 28 12 mAbs mAbs NNP cord-284409-xiyeceib 28 13 and and CC cord-284409-xiyeceib 28 14 a a DT cord-284409-xiyeceib 28 15 panel panel NN cord-284409-xiyeceib 28 16 of of IN cord-284409-xiyeceib 28 17 SARS SARS NNP cord-284409-xiyeceib 28 18 CoVspecific CoVspecific NNP cord-284409-xiyeceib 28 19 mAbs mAbs NNP cord-284409-xiyeceib 28 20 . . . cord-284409-xiyeceib 29 1 Our -PRON- PRP$ cord-284409-xiyeceib 29 2 experiments experiment NNS cord-284409-xiyeceib 29 3 based base VBN cord-284409-xiyeceib 29 4 on on IN cord-284409-xiyeceib 29 5 the the DT cord-284409-xiyeceib 29 6 ASMD ASMD NNP cord-284409-xiyeceib 29 7 predicted predict VBD cord-284409-xiyeceib 29 8 that that IN cord-284409-xiyeceib 29 9 elicitation elicitation NN cord-284409-xiyeceib 29 10 of of IN cord-284409-xiyeceib 29 11 HIV-1-specific HIV-1-specific NNP cord-284409-xiyeceib 29 12 bnAbs bnAbs NNP cord-284409-xiyeceib 29 13 would would MD cord-284409-xiyeceib 29 14 take take VB cord-284409-xiyeceib 29 15 at at RB cord-284409-xiyeceib 29 16 least least JJS cord-284409-xiyeceib 29 17 3 3 CD cord-284409-xiyeceib 29 18 years year NNS cord-284409-xiyeceib 29 19 . . . cord-284409-xiyeceib 30 1 An an DT cord-284409-xiyeceib 30 2 illustrative illustrative JJ cord-284409-xiyeceib 30 3 mathematical mathematical JJ cord-284409-xiyeceib 30 4 model model NN cord-284409-xiyeceib 30 5 using use VBG cord-284409-xiyeceib 30 6 the the DT cord-284409-xiyeceib 30 7 ASMD ASMD NNP cord-284409-xiyeceib 30 8 rate rate NN cord-284409-xiyeceib 30 9 based base VBN cord-284409-xiyeceib 30 10 on on IN cord-284409-xiyeceib 30 11 www.frontiersin.org www.frontiersin.org IN cord-284409-xiyeceib 30 12 an an DT cord-284409-xiyeceib 30 13 exponential exponential JJ cord-284409-xiyeceib 30 14 time time NN cord-284409-xiyeceib 30 15 dependent dependent JJ cord-284409-xiyeceib 30 16 function function NN cord-284409-xiyeceib 30 17 suggested suggest VBD cord-284409-xiyeceib 30 18 that that IN cord-284409-xiyeceib 30 19 a a DT cord-284409-xiyeceib 30 20 much much RB cord-284409-xiyeceib 30 21 longer long JJR cord-284409-xiyeceib 30 22 time time NN cord-284409-xiyeceib 30 23 would would MD cord-284409-xiyeceib 30 24 be be VB cord-284409-xiyeceib 30 25 needed need VBN cord-284409-xiyeceib 30 26 for for IN cord-284409-xiyeceib 30 27 the the DT cord-284409-xiyeceib 30 28 required require VBN cord-284409-xiyeceib 30 29 maturation maturation NN cord-284409-xiyeceib 30 30 , , , cord-284409-xiyeceib 30 31 unless unless IN cord-284409-xiyeceib 30 32 somatic somatic JJ cord-284409-xiyeceib 30 33 diversification diversification NN cord-284409-xiyeceib 30 34 had have VBD cord-284409-xiyeceib 30 35 already already RB cord-284409-xiyeceib 30 36 been be VBN cord-284409-xiyeceib 30 37 initiated initiate VBN cord-284409-xiyeceib 30 38 from from IN cord-284409-xiyeceib 30 39 an an DT cord-284409-xiyeceib 30 40 intermediate intermediate JJ cord-284409-xiyeceib 30 41 antibody antibody NN cord-284409-xiyeceib 30 42 . . . cord-284409-xiyeceib 31 1 Thus thus RB cord-284409-xiyeceib 31 2 , , , cord-284409-xiyeceib 31 3 all all PDT cord-284409-xiyeceib 31 4 these these DT cord-284409-xiyeceib 31 5 initial initial JJ cord-284409-xiyeceib 31 6 studies study NNS cord-284409-xiyeceib 31 7 corroborated corroborate VBD cord-284409-xiyeceib 31 8 our -PRON- PRP$ cord-284409-xiyeceib 31 9 hypothesis hypothesis NN cord-284409-xiyeceib 31 10 that that IN cord-284409-xiyeceib 31 11 the the DT cord-284409-xiyeceib 31 12 infrequent infrequent JJ cord-284409-xiyeceib 31 13 occurrence occurrence NN cord-284409-xiyeceib 31 14 or or CC cord-284409-xiyeceib 31 15 absence absence NN cord-284409-xiyeceib 31 16 of of IN cord-284409-xiyeceib 31 17 bnAbs bnabs NN cord-284409-xiyeceib 31 18 in in IN cord-284409-xiyeceib 31 19 HIV-1-infected hiv-1-infecte VBN cord-284409-xiyeceib 31 20 patients patient NNS cord-284409-xiyeceib 31 21 could could MD cord-284409-xiyeceib 31 22 be be VB cord-284409-xiyeceib 31 23 due due JJ cord-284409-xiyeceib 31 24 , , , cord-284409-xiyeceib 31 25 at at IN cord-284409-xiyeceib 31 26 least least JJS cord-284409-xiyeceib 31 27 in in IN cord-284409-xiyeceib 31 28 part part NN cord-284409-xiyeceib 31 29 , , , cord-284409-xiyeceib 31 30 to to IN cord-284409-xiyeceib 31 31 the the DT cord-284409-xiyeceib 31 32 lack lack NN cord-284409-xiyeceib 31 33 or or CC cord-284409-xiyeceib 31 34 limited limited JJ cord-284409-xiyeceib 31 35 availability availability NN cord-284409-xiyeceib 31 36 of of IN cord-284409-xiyeceib 31 37 B b NN cord-284409-xiyeceib 31 38 cell cell NN cord-284409-xiyeceib 31 39 receptors receptor NNS cord-284409-xiyeceib 31 40 that that WDT cord-284409-xiyeceib 31 41 rapidly rapidly RB cord-284409-xiyeceib 31 42 mature mature VBP cord-284409-xiyeceib 31 43 into into IN cord-284409-xiyeceib 31 44 bnAbs bnabs NN cord-284409-xiyeceib 31 45 . . . cord-284409-xiyeceib 32 1 Therefore therefore RB cord-284409-xiyeceib 32 2 , , , cord-284409-xiyeceib 32 3 we -PRON- PRP cord-284409-xiyeceib 32 4 suggested suggest VBD cord-284409-xiyeceib 32 5 that that IN cord-284409-xiyeceib 32 6 appropriate appropriate JJ cord-284409-xiyeceib 32 7 immunization immunization NN cord-284409-xiyeceib 32 8 protocols protocol NNS cord-284409-xiyeceib 32 9 of of IN cord-284409-xiyeceib 32 10 long long JJ cord-284409-xiyeceib 32 11 duration duration NN cord-284409-xiyeceib 32 12 need need VBP cord-284409-xiyeceib 32 13 to to TO cord-284409-xiyeceib 32 14 be be VB cord-284409-xiyeceib 32 15 developed develop VBN cord-284409-xiyeceib 32 16 using use VBG cord-284409-xiyeceib 32 17 the the DT cord-284409-xiyeceib 32 18 knowledge knowledge NN cord-284409-xiyeceib 32 19 gained gain VBN cord-284409-xiyeceib 32 20 from from IN cord-284409-xiyeceib 32 21 the the DT cord-284409-xiyeceib 32 22 exploration exploration NN cord-284409-xiyeceib 32 23 of of IN cord-284409-xiyeceib 32 24 antibody antibody NN cord-284409-xiyeceib 32 25 maturation maturation NN cord-284409-xiyeceib 32 26 pathways pathway NNS cord-284409-xiyeceib 32 27 in in IN cord-284409-xiyeceib 32 28 humans human NNS cord-284409-xiyeceib 32 29 ( ( -LRB- cord-284409-xiyeceib 32 30 10 10 CD cord-284409-xiyeceib 32 31 ) ) -RRB- cord-284409-xiyeceib 32 32 . . . cord-284409-xiyeceib 33 1 From from IN cord-284409-xiyeceib 33 2 the the DT cord-284409-xiyeceib 33 3 striking striking JJ cord-284409-xiyeceib 33 4 observation observation NN cord-284409-xiyeceib 33 5 that that IN cord-284409-xiyeceib 33 6 all all DT cord-284409-xiyeceib 33 7 known know VBN cord-284409-xiyeceib 33 8 potent potent JJ cord-284409-xiyeceib 33 9 HIV-1 HIV-1 NNP cord-284409-xiyeceib 33 10 bnAbs bnAbs NNP cord-284409-xiyeceib 33 11 are be VBP cord-284409-xiyeceib 33 12 highly highly RB cord-284409-xiyeceib 33 13 divergent divergent JJ cord-284409-xiyeceib 33 14 from from IN cord-284409-xiyeceib 33 15 their -PRON- PRP$ cord-284409-xiyeceib 33 16 putative putative JJ cord-284409-xiyeceib 33 17 germline germline JJ cord-284409-xiyeceib 33 18 predecessors predecessor NNS cord-284409-xiyeceib 33 19 in in IN cord-284409-xiyeceib 33 20 contrast contrast NN cord-284409-xiyeceib 33 21 to to IN cord-284409-xiyeceib 33 22 bnAbs bnabs NN cord-284409-xiyeceib 33 23 against against IN cord-284409-xiyeceib 33 24 henipaviruses henipaviruses NNPS cord-284409-xiyeceib 33 25 and and CC cord-284409-xiyeceib 33 26 SARS SARS NNP cord-284409-xiyeceib 33 27 CoV CoV NNP cord-284409-xiyeceib 33 28 coronavirus coronavirus NNP cord-284409-xiyeceib 33 29 , , , cord-284409-xiyeceib 33 30 we -PRON- PRP cord-284409-xiyeceib 33 31 hypothesized hypothesize VBD cord-284409-xiyeceib 33 32 that that IN cord-284409-xiyeceib 33 33 , , , cord-284409-xiyeceib 33 34 since since IN cord-284409-xiyeceib 33 35 the the DT cord-284409-xiyeceib 33 36 germline germline NN cord-284409-xiyeceib 33 37 antibodies antibody NNS cord-284409-xiyeceib 33 38 are be VBP cord-284409-xiyeceib 33 39 so so RB cord-284409-xiyeceib 33 40 different different JJ cord-284409-xiyeceib 33 41 compared compare VBN cord-284409-xiyeceib 33 42 to to IN cord-284409-xiyeceib 33 43 the the DT cord-284409-xiyeceib 33 44 highly highly RB cord-284409-xiyeceib 33 45 somatically somatically RB cord-284409-xiyeceib 33 46 mutated mutate VBD cord-284409-xiyeceib 33 47 HIV-1 HIV-1 NNP cord-284409-xiyeceib 33 48 bnAbs bnAbs NNP cord-284409-xiyeceib 33 49 , , , cord-284409-xiyeceib 33 50 they -PRON- PRP cord-284409-xiyeceib 33 51 may may MD cord-284409-xiyeceib 33 52 not not RB cord-284409-xiyeceib 33 53 bind bind VB cord-284409-xiyeceib 33 54 to to IN cord-284409-xiyeceib 33 55 the the DT cord-284409-xiyeceib 33 56 Env Env NNP cord-284409-xiyeceib 33 57 . . . cord-284409-xiyeceib 34 1 This this DT cord-284409-xiyeceib 34 2 led lead VBD cord-284409-xiyeceib 34 3 us -PRON- PRP cord-284409-xiyeceib 34 4 to to IN cord-284409-xiyeceib 34 5 the the DT cord-284409-xiyeceib 34 6 hypothesis hypothesis NN cord-284409-xiyeceib 34 7 that that IN cord-284409-xiyeceib 34 8 the the DT cord-284409-xiyeceib 34 9 immunogenicity immunogenicity NN cord-284409-xiyeceib 34 10 of of IN cord-284409-xiyeceib 34 11 the the DT cord-284409-xiyeceib 34 12 highly highly RB cord-284409-xiyeceib 34 13 conserved conserved JJ cord-284409-xiyeceib 34 14 epitopes epitope NNS cord-284409-xiyeceib 34 15 on on IN cord-284409-xiyeceib 34 16 the the DT cord-284409-xiyeceib 34 17 HIV-1 HIV-1 NNP cord-284409-xiyeceib 34 18 native native JJ cord-284409-xiyeceib 34 19 envelope envelope NN cord-284409-xiyeceib 34 20 glycoproteins glycoprotein NNS cord-284409-xiyeceib 34 21 ( ( -LRB- cord-284409-xiyeceib 34 22 Envs Envs NNP cord-284409-xiyeceib 34 23 ) ) -RRB- cord-284409-xiyeceib 34 24 is be VBZ cord-284409-xiyeceib 34 25 reduced reduce VBN cord-284409-xiyeceib 34 26 or or CC cord-284409-xiyeceib 34 27 eliminated eliminate VBN cord-284409-xiyeceib 34 28 by by IN cord-284409-xiyeceib 34 29 their -PRON- PRP$ cord-284409-xiyeceib 34 30 very very RB cord-284409-xiyeceib 34 31 weak weak JJ cord-284409-xiyeceib 34 32 or or CC cord-284409-xiyeceib 34 33 absent absent JJ cord-284409-xiyeceib 34 34 interactions interaction NNS cord-284409-xiyeceib 34 35 with with IN cord-284409-xiyeceib 34 36 germline germline JJ cord-284409-xiyeceib 34 37 antibodies antibody NNS cord-284409-xiyeceib 34 38 , , , cord-284409-xiyeceib 34 39 which which WDT cord-284409-xiyeceib 34 40 could could MD cord-284409-xiyeceib 34 41 not not RB cord-284409-xiyeceib 34 42 initiate initiate VB cord-284409-xiyeceib 34 43 and/or and/or CC cord-284409-xiyeceib 34 44 sustain sustain VB cord-284409-xiyeceib 34 45 immune immune JJ cord-284409-xiyeceib 34 46 responses response NNS cord-284409-xiyeceib 34 47 leading lead VBG cord-284409-xiyeceib 34 48 to to IN cord-284409-xiyeceib 34 49 elicitation elicitation NN cord-284409-xiyeceib 34 50 of of IN cord-284409-xiyeceib 34 51 bnAbs bnabs NN cord-284409-xiyeceib 34 52 : : : cord-284409-xiyeceib 34 53 even even RB cord-284409-xiyeceib 34 54 if if IN cord-284409-xiyeceib 34 55 immune immune JJ cord-284409-xiyeceib 34 56 responses response NNS cord-284409-xiyeceib 34 57 are be VBP cord-284409-xiyeceib 34 58 initiated initiate VBN cord-284409-xiyeceib 34 59 and and CC cord-284409-xiyeceib 34 60 sustained sustain VBN cord-284409-xiyeceib 34 61 , , , cord-284409-xiyeceib 34 62 the the DT cord-284409-xiyeceib 34 63 maturation maturation NN cord-284409-xiyeceib 34 64 pathways pathway NNS cord-284409-xiyeceib 34 65 are be VBP cord-284409-xiyeceib 34 66 so so RB cord-284409-xiyeceib 34 67 complex complex JJ cord-284409-xiyeceib 34 68 that that WDT cord-284409-xiyeceib 34 69 help help VBP cord-284409-xiyeceib 34 70 and and CC cord-284409-xiyeceib 34 71 long long JJ cord-284409-xiyeceib 34 72 times time NNS cord-284409-xiyeceib 34 73 may may MD cord-284409-xiyeceib 34 74 be be VB cord-284409-xiyeceib 34 75 needed need VBN cord-284409-xiyeceib 34 76 for for IN cord-284409-xiyeceib 34 77 their -PRON- PRP$ cord-284409-xiyeceib 34 78 elicitation elicitation NN cord-284409-xiyeceib 34 79 . . . cord-284409-xiyeceib 35 1 To to TO cord-284409-xiyeceib 35 2 test test VB cord-284409-xiyeceib 35 3 our -PRON- PRP$ cord-284409-xiyeceib 35 4 antibody antibody NN cord-284409-xiyeceib 35 5 germline germline NN cord-284409-xiyeceib 35 6 / / SYM cord-284409-xiyeceib 35 7 maturation maturation NN cord-284409-xiyeceib 35 8 hypothesis hypothesis NN cord-284409-xiyeceib 35 9 , , , cord-284409-xiyeceib 35 10 we -PRON- PRP cord-284409-xiyeceib 35 11 designed design VBD cord-284409-xiyeceib 35 12 germline germline NN cord-284409-xiyeceib 35 13 - - HYPH cord-284409-xiyeceib 35 14 like like JJ cord-284409-xiyeceib 35 15 antibodies antibody NNS cord-284409-xiyeceib 35 16 corresponding correspond VBG cord-284409-xiyeceib 35 17 to to IN cord-284409-xiyeceib 35 18 the the DT cord-284409-xiyeceib 35 19 known know VBN cord-284409-xiyeceib 35 20 bnAbs bnabs NN cord-284409-xiyeceib 35 21 b12 b12 NN cord-284409-xiyeceib 35 22 , , , cord-284409-xiyeceib 35 23 2G12 2g12 CD cord-284409-xiyeceib 35 24 , , , cord-284409-xiyeceib 35 25 2F5 2f5 CD cord-284409-xiyeceib 35 26 , , , cord-284409-xiyeceib 35 27 X5 X5 NNP cord-284409-xiyeceib 35 28 , , , cord-284409-xiyeceib 35 29 m44 m44 NNP cord-284409-xiyeceib 35 30 , , , cord-284409-xiyeceib 35 31 and and CC cord-284409-xiyeceib 35 32 m46 m46 NN cord-284409-xiyeceib 35 33 ( ( -LRB- cord-284409-xiyeceib 35 34 the the DT cord-284409-xiyeceib 35 35 latter latter JJ cord-284409-xiyeceib 35 36 three three CD cord-284409-xiyeceib 35 37 antibodies antibody NNS cord-284409-xiyeceib 35 38 were be VBD cord-284409-xiyeceib 35 39 discovered discover VBN cord-284409-xiyeceib 35 40 in in IN cord-284409-xiyeceib 35 41 our -PRON- PRP$ cord-284409-xiyeceib 35 42 laboratory laboratory NN cord-284409-xiyeceib 35 43 and and CC cord-284409-xiyeceib 35 44 possess possess VB cord-284409-xiyeceib 35 45 HIV-1 HIV-1 NNP cord-284409-xiyeceib 35 46 cross cross NN cord-284409-xiyeceib 35 47 - - NN cord-284409-xiyeceib 35 48 reactivity reactivity NN cord-284409-xiyeceib 35 49 with with IN cord-284409-xiyeceib 35 50 moderate moderate JJ cord-284409-xiyeceib 35 51 neutralizing neutralize VBG cord-284409-xiyeceib 35 52 activities activity NNS cord-284409-xiyeceib 35 53 ) ) -RRB- cord-284409-xiyeceib 35 54 and and CC cord-284409-xiyeceib 35 55 evaluated evaluate VBD cord-284409-xiyeceib 35 56 them -PRON- PRP cord-284409-xiyeceib 35 57 for for IN cord-284409-xiyeceib 35 58 binding bind VBG cord-284409-xiyeceib 35 59 to to IN cord-284409-xiyeceib 35 60 Envs Envs NNP cord-284409-xiyeceib 35 61 ( ( -LRB- cord-284409-xiyeceib 35 62 11 11 CD cord-284409-xiyeceib 35 63 ) ) -RRB- cord-284409-xiyeceib 35 64 . . . cord-284409-xiyeceib 36 1 We -PRON- PRP cord-284409-xiyeceib 36 2 found find VBD cord-284409-xiyeceib 36 3 that that IN cord-284409-xiyeceib 36 4 while while IN cord-284409-xiyeceib 36 5 germline germline NN cord-284409-xiyeceib 36 6 - - HYPH cord-284409-xiyeceib 36 7 like like JJ cord-284409-xiyeceib 36 8 X5 X5 NNP cord-284409-xiyeceib 36 9 , , , cord-284409-xiyeceib 36 10 m44 m44 NNP cord-284409-xiyeceib 36 11 , , , cord-284409-xiyeceib 36 12 and and CC cord-284409-xiyeceib 36 13 m46 m46 NN cord-284409-xiyeceib 36 14 bound bind VBN cord-284409-xiyeceib 36 15 to to IN cord-284409-xiyeceib 36 16 Envs Envs NNP cord-284409-xiyeceib 36 17 with with IN cord-284409-xiyeceib 36 18 relatively relatively RB cord-284409-xiyeceib 36 19 high high JJ cord-284409-xiyeceib 36 20 affinity affinity NN cord-284409-xiyeceib 36 21 , , , cord-284409-xiyeceib 36 22 the the DT cord-284409-xiyeceib 36 23 germline germline NN cord-284409-xiyeceib 36 24 - - HYPH cord-284409-xiyeceib 36 25 like like JJ cord-284409-xiyeceib 36 26 precursors precursor NNS cord-284409-xiyeceib 36 27 of of IN cord-284409-xiyeceib 36 28 b12 b12 NN cord-284409-xiyeceib 36 29 , , , cord-284409-xiyeceib 36 30 2G12 2g12 CD cord-284409-xiyeceib 36 31 , , , cord-284409-xiyeceib 36 32 and and CC cord-284409-xiyeceib 36 33 2F5 2f5 CD cord-284409-xiyeceib 36 34 failed fail VBD cord-284409-xiyeceib 36 35 to to TO cord-284409-xiyeceib 36 36 bind bind VB cord-284409-xiyeceib 36 37 Envs Envs NNP cord-284409-xiyeceib 36 38 in in IN cord-284409-xiyeceib 36 39 an an DT cord-284409-xiyeceib 36 40 ELISA ELISA NNP cord-284409-xiyeceib 36 41 assay assay NN cord-284409-xiyeceib 36 42 although although IN cord-284409-xiyeceib 36 43 their -PRON- PRP$ cord-284409-xiyeceib 36 44 corresponding correspond VBG cord-284409-xiyeceib 36 45 mature mature JJ cord-284409-xiyeceib 36 46 bnAbs bnabs NN cord-284409-xiyeceib 36 47 bound bind VBN cord-284409-xiyeceib 36 48 strongly strongly RB cord-284409-xiyeceib 36 49 . . . cord-284409-xiyeceib 37 1 These these DT cord-284409-xiyeceib 37 2 results result NNS cord-284409-xiyeceib 37 3 provided provide VBD cord-284409-xiyeceib 37 4 initial initial JJ cord-284409-xiyeceib 37 5 evidence evidence NN cord-284409-xiyeceib 37 6 that that IN cord-284409-xiyeceib 37 7 the the DT cord-284409-xiyeceib 37 8 Env Env NNP cord-284409-xiyeceib 37 9 structures structure NNS cord-284409-xiyeceib 37 10 containing contain VBG cord-284409-xiyeceib 37 11 conserved conserved JJ cord-284409-xiyeceib 37 12 epitopes epitope NNS cord-284409-xiyeceib 37 13 might may MD cord-284409-xiyeceib 37 14 not not RB cord-284409-xiyeceib 37 15 initiate initiate VB cord-284409-xiyeceib 37 16 humoral humoral JJ cord-284409-xiyeceib 37 17 responses response NNS cord-284409-xiyeceib 37 18 due due JJ cord-284409-xiyeceib 37 19 to to IN cord-284409-xiyeceib 37 20 limited limited JJ cord-284409-xiyeceib 37 21 or or CC cord-284409-xiyeceib 37 22 absent absent JJ cord-284409-xiyeceib 37 23 binding binding NN cord-284409-xiyeceib 37 24 to to IN cord-284409-xiyeceib 37 25 the the DT cord-284409-xiyeceib 37 26 germline germline JJ cord-284409-xiyeceib 37 27 precursors precursor NNS cord-284409-xiyeceib 37 28 of of IN cord-284409-xiyeceib 37 29 bnAbs bnabs NN cord-284409-xiyeceib 37 30 . . . cord-284409-xiyeceib 38 1 These these DT cord-284409-xiyeceib 38 2 germline germline JJ cord-284409-xiyeceib 38 3 precursors precursor NNS cord-284409-xiyeceib 38 4 may may MD cord-284409-xiyeceib 38 5 also also RB cord-284409-xiyeceib 38 6 be be VB cord-284409-xiyeceib 38 7 of of IN cord-284409-xiyeceib 38 8 limited limited JJ cord-284409-xiyeceib 38 9 availability availability NN cord-284409-xiyeceib 38 10 as as IN cord-284409-xiyeceib 38 11 recently recently RB cord-284409-xiyeceib 38 12 reported report VBN cord-284409-xiyeceib 38 13 ( ( -LRB- cord-284409-xiyeceib 38 14 12 12 CD cord-284409-xiyeceib 38 15 ) ) -RRB- cord-284409-xiyeceib 38 16 . . . cord-284409-xiyeceib 39 1 Following follow VBG cord-284409-xiyeceib 39 2 that that DT cord-284409-xiyeceib 39 3 initial initial JJ cord-284409-xiyeceib 39 4 study study NN cord-284409-xiyeceib 39 5 , , , cord-284409-xiyeceib 39 6 we -PRON- PRP cord-284409-xiyeceib 39 7 expanded expand VBD cord-284409-xiyeceib 39 8 our -PRON- PRP$ cord-284409-xiyeceib 39 9 investigation investigation NN cord-284409-xiyeceib 39 10 to to IN cord-284409-xiyeceib 39 11 different different JJ cord-284409-xiyeceib 39 12 variants variant NNS cord-284409-xiyeceib 39 13 of of IN cord-284409-xiyeceib 39 14 the the DT cord-284409-xiyeceib 39 15 two two CD cord-284409-xiyeceib 39 16 different different JJ cord-284409-xiyeceib 39 17 antibodies antibody NNS cord-284409-xiyeceib 39 18 ( ( -LRB- cord-284409-xiyeceib 39 19 b12 b12 NN cord-284409-xiyeceib 39 20 and and CC cord-284409-xiyeceib 39 21 X5 X5 NNP cord-284409-xiyeceib 39 22 ) ) -RRB- cord-284409-xiyeceib 39 23 including include VBG cord-284409-xiyeceib 39 24 their -PRON- PRP$ cord-284409-xiyeceib 39 25 closest close JJS cord-284409-xiyeceib 39 26 germline germline JJ cord-284409-xiyeceib 39 27 counterparts counterpart NNS cord-284409-xiyeceib 39 28 and and CC cord-284409-xiyeceib 39 29 several several JJ cord-284409-xiyeceib 39 30 germline germline NN cord-284409-xiyeceib 39 31 - - HYPH cord-284409-xiyeceib 39 32 like like JJ cord-284409-xiyeceib 39 33 intermediates intermediate NNS cord-284409-xiyeceib 39 34 ( ( -LRB- cord-284409-xiyeceib 39 35 13 13 CD cord-284409-xiyeceib 39 36 ) ) -RRB- cord-284409-xiyeceib 39 37 . . . cord-284409-xiyeceib 40 1 The the DT cord-284409-xiyeceib 40 2 experiments experiment NNS cord-284409-xiyeceib 40 3 showed show VBD cord-284409-xiyeceib 40 4 that that IN cord-284409-xiyeceib 40 5 b12 b12 NN cord-284409-xiyeceib 40 6 intermediate intermediate JJ cord-284409-xiyeceib 40 7 antibodies antibody NNS cord-284409-xiyeceib 40 8 neutralized neutralize VBD cord-284409-xiyeceib 40 9 only only RB cord-284409-xiyeceib 40 10 some some DT cord-284409-xiyeceib 40 11 HIV-1 HIV-1 NNP cord-284409-xiyeceib 40 12 isolates isolate VBZ cord-284409-xiyeceib 40 13 with with IN cord-284409-xiyeceib 40 14 relatively relatively RB cord-284409-xiyeceib 40 15 weak weak JJ cord-284409-xiyeceib 40 16 potency potency NN cord-284409-xiyeceib 40 17 . . . cord-284409-xiyeceib 41 1 In in IN cord-284409-xiyeceib 41 2 contrast contrast NN cord-284409-xiyeceib 41 3 , , , cord-284409-xiyeceib 41 4 intermediates intermediate NNS cord-284409-xiyeceib 41 5 of of IN cord-284409-xiyeceib 41 6 X5 X5 NNP cord-284409-xiyeceib 41 7 neutralized neutralize VBD cord-284409-xiyeceib 41 8 a a DT cord-284409-xiyeceib 41 9 subset subset NN cord-284409-xiyeceib 41 10 of of IN cord-284409-xiyeceib 41 11 the the DT cord-284409-xiyeceib 41 12 tested test VBN cord-284409-xiyeceib 41 13 HIV-1 HIV-1 NNP cord-284409-xiyeceib 41 14 isolates isolate VBZ cord-284409-xiyeceib 41 15 with with IN cord-284409-xiyeceib 41 16 efficiencies efficiency NNS cord-284409-xiyeceib 41 17 comparable comparable JJ cord-284409-xiyeceib 41 18 to to IN cord-284409-xiyeceib 41 19 those those DT cord-284409-xiyeceib 41 20 of of IN cord-284409-xiyeceib 41 21 the the DT cord-284409-xiyeceib 41 22 matured mature VBN cord-284409-xiyeceib 41 23 X5 X5 NNP cord-284409-xiyeceib 41 24 . . . cord-284409-xiyeceib 42 1 These these DT cord-284409-xiyeceib 42 2 results result NNS cord-284409-xiyeceib 42 3 helped help VBD cord-284409-xiyeceib 42 4 explain explain VB cord-284409-xiyeceib 42 5 the the DT cord-284409-xiyeceib 42 6 relatively relatively RB cord-284409-xiyeceib 42 7 high high JJ cord-284409-xiyeceib 42 8 immunogenicity immunogenicity NN cord-284409-xiyeceib 42 9 of of IN cord-284409-xiyeceib 42 10 the the DT cord-284409-xiyeceib 42 11 coreceptor coreceptor NN cord-284409-xiyeceib 42 12 binding bind VBG cord-284409-xiyeceib 42 13 site site NN cord-284409-xiyeceib 42 14 on on IN cord-284409-xiyeceib 42 15 gp120 gp120 NNP cord-284409-xiyeceib 42 16 and and CC cord-284409-xiyeceib 42 17 the the DT cord-284409-xiyeceib 42 18 abundance abundance NN cord-284409-xiyeceib 42 19 of of IN cord-284409-xiyeceib 42 20 CD4-induced cd4-induce VBN cord-284409-xiyeceib 42 21 ( ( -LRB- cord-284409-xiyeceib 42 22 CD4i CD4i NNP cord-284409-xiyeceib 42 23 ) ) -RRB- cord-284409-xiyeceib 42 24 antibodies antibody NNS cord-284409-xiyeceib 42 25 in in IN cord-284409-xiyeceib 42 26 HIV-1-infected hiv-1-infecte VBN cord-284409-xiyeceib 42 27 patients patient NNS cord-284409-xiyeceib 42 28 ( ( -LRB- cord-284409-xiyeceib 42 29 X5 X5 NNP cord-284409-xiyeceib 42 30 is be VBZ cord-284409-xiyeceib 42 31 a a DT cord-284409-xiyeceib 42 32 CD4i CD4i NNP cord-284409-xiyeceib 42 33 antibody antibody NN cord-284409-xiyeceib 42 34 ) ) -RRB- cord-284409-xiyeceib 42 35 as as RB cord-284409-xiyeceib 42 36 well well RB cord-284409-xiyeceib 42 37 as as IN cord-284409-xiyeceib 42 38 the the DT cord-284409-xiyeceib 42 39 maturation maturation NN cord-284409-xiyeceib 42 40 pathway pathway NN cord-284409-xiyeceib 42 41 of of IN cord-284409-xiyeceib 42 42 X5 X5 NNP cord-284409-xiyeceib 42 43 . . . cord-284409-xiyeceib 43 1 In in IN cord-284409-xiyeceib 43 2 the the DT cord-284409-xiyeceib 43 3 case case NN cord-284409-xiyeceib 43 4 of of IN cord-284409-xiyeceib 43 5 b12 b12 NN cord-284409-xiyeceib 43 6 , , , cord-284409-xiyeceib 43 7 germlinelike germlinelike NNP cord-284409-xiyeceib 43 8 intermediates intermediate NNS cord-284409-xiyeceib 43 9 along along IN cord-284409-xiyeceib 43 10 the the DT cord-284409-xiyeceib 43 11 maturation maturation NN cord-284409-xiyeceib 43 12 pathway pathway NN cord-284409-xiyeceib 43 13 were be VBD cord-284409-xiyeceib 43 14 shown show VBN cord-284409-xiyeceib 43 15 to to IN cord-284409-xiyeceib 43 16 not not RB cord-284409-xiyeceib 43 17 only only RB cord-284409-xiyeceib 43 18 bind bind VB cord-284409-xiyeceib 43 19 some some DT cord-284409-xiyeceib 43 20 Envs Envs NNP cord-284409-xiyeceib 43 21 but but CC cord-284409-xiyeceib 43 22 also also RB cord-284409-xiyeceib 43 23 human human JJ cord-284409-xiyeceib 43 24 self self NN cord-284409-xiyeceib 43 25 antigens antigen NNS cord-284409-xiyeceib 43 26 , , , cord-284409-xiyeceib 43 27 suggesting suggest VBG cord-284409-xiyeceib 43 28 that that IN cord-284409-xiyeceib 43 29 antigens antigen NNS cord-284409-xiyeceib 43 30 other other JJ cord-284409-xiyeceib 43 31 than than IN cord-284409-xiyeceib 43 32 the the DT cord-284409-xiyeceib 43 33 Envs Envs NNP cord-284409-xiyeceib 43 34 could could MD cord-284409-xiyeceib 43 35 help help VB cord-284409-xiyeceib 43 36 guide guide VB cord-284409-xiyeceib 43 37 the the DT cord-284409-xiyeceib 43 38 immune immune JJ cord-284409-xiyeceib 43 39 system system NN cord-284409-xiyeceib 43 40 through through IN cord-284409-xiyeceib 43 41 the the DT cord-284409-xiyeceib 43 42 b12 b12 NN cord-284409-xiyeceib 43 43 maturation maturation NN cord-284409-xiyeceib 43 44 pathway pathway NN cord-284409-xiyeceib 43 45 . . . cord-284409-xiyeceib 44 1 Therefore therefore RB cord-284409-xiyeceib 44 2 , , , cord-284409-xiyeceib 44 3 we -PRON- PRP cord-284409-xiyeceib 44 4 proposed propose VBD cord-284409-xiyeceib 44 5 a a DT cord-284409-xiyeceib 44 6 conceptually conceptually RB cord-284409-xiyeceib 44 7 new new JJ cord-284409-xiyeceib 44 8 vaccination vaccination NN cord-284409-xiyeceib 44 9 approach approach NN cord-284409-xiyeceib 44 10 , , , cord-284409-xiyeceib 44 11 in in IN cord-284409-xiyeceib 44 12 which which WDT cord-284409-xiyeceib 44 13 it -PRON- PRP cord-284409-xiyeceib 44 14 is be VBZ cord-284409-xiyeceib 44 15 critical critical JJ cord-284409-xiyeceib 44 16 to to TO cord-284409-xiyeceib 44 17 identify identify VB cord-284409-xiyeceib 44 18 primary primary JJ cord-284409-xiyeceib 44 19 immunogens immunogen NNS cord-284409-xiyeceib 44 20 that that WDT cord-284409-xiyeceib 44 21 bind bind VBP cord-284409-xiyeceib 44 22 to to IN cord-284409-xiyeceib 44 23 the the DT cord-284409-xiyeceib 44 24 germline germline JJ cord-284409-xiyeceib 44 25 antibodies antibody NNS cord-284409-xiyeceib 44 26 that that WDT cord-284409-xiyeceib 44 27 are be VBP cord-284409-xiyeceib 44 28 predecessors predecessor NNS cord-284409-xiyeceib 44 29 of of IN cord-284409-xiyeceib 44 30 bnAbs bnAbs NNP cord-284409-xiyeceib 44 31 . . . cord-284409-xiyeceib 45 1 If if IN cord-284409-xiyeceib 45 2 needed need VBN cord-284409-xiyeceib 45 3 , , , cord-284409-xiyeceib 45 4 these these DT cord-284409-xiyeceib 45 5 immunogens immunogen NNS cord-284409-xiyeceib 45 6 should should MD cord-284409-xiyeceib 45 7 be be VB cord-284409-xiyeceib 45 8 combined combine VBN cord-284409-xiyeceib 45 9 with with IN cord-284409-xiyeceib 45 10 secondary secondary JJ cord-284409-xiyeceib 45 11 immunogens immunogen NNS cord-284409-xiyeceib 45 12 that that WDT cord-284409-xiyeceib 45 13 recognize recognize VBP cord-284409-xiyeceib 45 14 intermediate intermediate JJ cord-284409-xiyeceib 45 15 and/or and/or CC cord-284409-xiyeceib 45 16 matured matured JJ cord-284409-xiyeceib 45 17 antibodies antibody NNS cord-284409-xiyeceib 45 18 to to TO cord-284409-xiyeceib 45 19 guide guide VB cord-284409-xiyeceib 45 20 the the DT cord-284409-xiyeceib 45 21 immune immune JJ cord-284409-xiyeceib 45 22 system system NN cord-284409-xiyeceib 45 23 through through IN cord-284409-xiyeceib 45 24 the the DT cord-284409-xiyeceib 45 25 prolonged prolonged JJ cord-284409-xiyeceib 45 26 , , , cord-284409-xiyeceib 45 27 complex complex JJ cord-284409-xiyeceib 45 28 maturation maturation NN cord-284409-xiyeceib 45 29 pathways pathway NNS cord-284409-xiyeceib 45 30 ( ( -LRB- cord-284409-xiyeceib 45 31 14 14 CD cord-284409-xiyeceib 45 32 ) ) -RRB- cord-284409-xiyeceib 45 33 . . . cord-284409-xiyeceib 46 1 In in IN cord-284409-xiyeceib 46 2 this this DT cord-284409-xiyeceib 46 3 respect respect NN cord-284409-xiyeceib 46 4 , , , cord-284409-xiyeceib 46 5 we -PRON- PRP cord-284409-xiyeceib 46 6 envisioned envision VBD cord-284409-xiyeceib 46 7 that that IN cord-284409-xiyeceib 46 8 the the DT cord-284409-xiyeceib 46 9 knowledge knowledge NN cord-284409-xiyeceib 46 10 of of IN cord-284409-xiyeceib 46 11 human human JJ cord-284409-xiyeceib 46 12 antibodyomes antibodyome NNS cord-284409-xiyeceib 46 13 would would MD cord-284409-xiyeceib 46 14 become become VB cord-284409-xiyeceib 46 15 indispensable indispensable JJ cord-284409-xiyeceib 46 16 to to TO cord-284409-xiyeceib 46 17 elucidate elucidate VB cord-284409-xiyeceib 46 18 the the DT cord-284409-xiyeceib 46 19 origin origin NN cord-284409-xiyeceib 46 20 , , , cord-284409-xiyeceib 46 21 diversity diversity NN cord-284409-xiyeceib 46 22 , , , cord-284409-xiyeceib 46 23 and and CC cord-284409-xiyeceib 46 24 maturation maturation NN cord-284409-xiyeceib 46 25 pathways pathway NNS cord-284409-xiyeceib 46 26 of of IN cord-284409-xiyeceib 46 27 bnAbs bnabs NN cord-284409-xiyeceib 46 28 and and CC cord-284409-xiyeceib 46 29 discover discover VB cord-284409-xiyeceib 46 30 germline germline NN cord-284409-xiyeceib 46 31 - - HYPH cord-284409-xiyeceib 46 32 like like JJ cord-284409-xiyeceib 46 33 intermediates intermediate NNS cord-284409-xiyeceib 46 34 of of IN cord-284409-xiyeceib 46 35 bnAbs bnAbs NNP cord-284409-xiyeceib 46 36 that that WDT cord-284409-xiyeceib 46 37 could could MD cord-284409-xiyeceib 46 38 provide provide VB cord-284409-xiyeceib 46 39 a a DT cord-284409-xiyeceib 46 40 basis basis NN cord-284409-xiyeceib 46 41 for for IN cord-284409-xiyeceib 46 42 the the DT cord-284409-xiyeceib 46 43 design design NN cord-284409-xiyeceib 46 44 of of IN cord-284409-xiyeceib 46 45 novel novel JJ cord-284409-xiyeceib 46 46 HIV-1 HIV-1 NNP cord-284409-xiyeceib 46 47 vaccine vaccine NN cord-284409-xiyeceib 46 48 immunogens immunogen NNS cord-284409-xiyeceib 46 49 ( ( -LRB- cord-284409-xiyeceib 46 50 14 14 CD cord-284409-xiyeceib 46 51 , , , cord-284409-xiyeceib 46 52 15 15 CD cord-284409-xiyeceib 46 53 ) ) -RRB- cord-284409-xiyeceib 46 54 . . . cord-284409-xiyeceib 47 1 In in IN cord-284409-xiyeceib 47 2 recent recent JJ cord-284409-xiyeceib 47 3 years year NNS cord-284409-xiyeceib 47 4 , , , cord-284409-xiyeceib 47 5 several several JJ cord-284409-xiyeceib 47 6 groups group NNS cord-284409-xiyeceib 47 7 have have VBP cord-284409-xiyeceib 47 8 reported report VBN cord-284409-xiyeceib 47 9 a a DT cord-284409-xiyeceib 47 10 number number NN cord-284409-xiyeceib 47 11 of of IN cord-284409-xiyeceib 47 12 new new JJ cord-284409-xiyeceib 47 13 bnAbs bnabs NN cord-284409-xiyeceib 47 14 that that WDT cord-284409-xiyeceib 47 15 were be VBD cord-284409-xiyeceib 47 16 identified identify VBN cord-284409-xiyeceib 47 17 from from IN cord-284409-xiyeceib 47 18 multiple multiple JJ cord-284409-xiyeceib 47 19 HIV-1 HIV-1 NNP cord-284409-xiyeceib 47 20 infected infect VBN cord-284409-xiyeceib 47 21 individuals individual NNS cord-284409-xiyeceib 47 22 using use VBG cord-284409-xiyeceib 47 23 designed design VBN cord-284409-xiyeceib 47 24 novel novel JJ cord-284409-xiyeceib 47 25 antigen antigen NN cord-284409-xiyeceib 47 26 baits bait NNS cord-284409-xiyeceib 47 27 and and CC cord-284409-xiyeceib 47 28 advanced advanced JJ cord-284409-xiyeceib 47 29 technologies technology NNS cord-284409-xiyeceib 47 30 implemented implement VBN cord-284409-xiyeceib 47 31 in in IN cord-284409-xiyeceib 47 32 isolating isolate VBG cord-284409-xiyeceib 47 33 human human JJ cord-284409-xiyeceib 47 34 mAbs mAbs NNP cord-284409-xiyeceib 47 35 and and CC cord-284409-xiyeceib 47 36 high high JJ cord-284409-xiyeceib 47 37 - - HYPH cord-284409-xiyeceib 47 38 throughput throughput NN cord-284409-xiyeceib 47 39 sequencing sequencing NN cord-284409-xiyeceib 47 40 ( ( -LRB- cord-284409-xiyeceib 47 41 16 16 CD cord-284409-xiyeceib 47 42 ) ) -RRB- cord-284409-xiyeceib 47 43 . . . cord-284409-xiyeceib 48 1 Particularly particularly RB cord-284409-xiyeceib 48 2 , , , cord-284409-xiyeceib 48 3 Haynes Haynes NNP cord-284409-xiyeceib 48 4 , , , cord-284409-xiyeceib 48 5 Kwong Kwong NNP cord-284409-xiyeceib 48 6 , , , cord-284409-xiyeceib 48 7 Stamatatos Stamatatos NNP cord-284409-xiyeceib 48 8 , , , cord-284409-xiyeceib 48 9 Scheif Scheif NNP cord-284409-xiyeceib 48 10 et et NNP cord-284409-xiyeceib 48 11 al al NNP cord-284409-xiyeceib 48 12 . . NNP cord-284409-xiyeceib 48 13 have have VBP cord-284409-xiyeceib 48 14 dealt deal VBN cord-284409-xiyeceib 48 15 with with IN cord-284409-xiyeceib 48 16 a a DT cord-284409-xiyeceib 48 17 large large JJ cord-284409-xiyeceib 48 18 amount amount NN cord-284409-xiyeceib 48 19 of of IN cord-284409-xiyeceib 48 20 data datum NNS cord-284409-xiyeceib 48 21 delineating delineate VBG cord-284409-xiyeceib 48 22 structural structural JJ cord-284409-xiyeceib 48 23 , , , cord-284409-xiyeceib 48 24 genetic genetic JJ cord-284409-xiyeceib 48 25 determinants determinant NNS cord-284409-xiyeceib 48 26 , , , cord-284409-xiyeceib 48 27 and and CC cord-284409-xiyeceib 48 28 maturation maturation NN cord-284409-xiyeceib 48 29 pathways pathway NNS cord-284409-xiyeceib 48 30 of of IN cord-284409-xiyeceib 48 31 different different JJ cord-284409-xiyeceib 48 32 bnAbs bnabs NN cord-284409-xiyeceib 48 33 . . . cord-284409-xiyeceib 49 1 These these DT cord-284409-xiyeceib 49 2 studies study NNS cord-284409-xiyeceib 49 3 not not RB cord-284409-xiyeceib 49 4 only only RB cord-284409-xiyeceib 49 5 confirmed confirm VBD cord-284409-xiyeceib 49 6 our -PRON- PRP$ cord-284409-xiyeceib 49 7 previous previous JJ cord-284409-xiyeceib 49 8 findings finding NNS cord-284409-xiyeceib 49 9 that that IN cord-284409-xiyeceib 49 10 the the DT cord-284409-xiyeceib 49 11 Envs Envs NNP cord-284409-xiyeceib 49 12 fail fail VB cord-284409-xiyeceib 49 13 to to TO cord-284409-xiyeceib 49 14 engage engage VB cord-284409-xiyeceib 49 15 germline germline JJ cord-284409-xiyeceib 49 16 versions version NNS cord-284409-xiyeceib 49 17 of of IN cord-284409-xiyeceib 49 18 bnAbs bnabs NN cord-284409-xiyeceib 49 19 but but CC cord-284409-xiyeceib 49 20 also also RB cord-284409-xiyeceib 49 21 suggested suggest VBD cord-284409-xiyeceib 49 22 possible possible JJ cord-284409-xiyeceib 49 23 holes hole NNS cord-284409-xiyeceib 49 24 in in IN cord-284409-xiyeceib 49 25 B b NN cord-284409-xiyeceib 49 26 cell cell NN cord-284409-xiyeceib 49 27 repertoires repertoire NNS cord-284409-xiyeceib 49 28 and and CC cord-284409-xiyeceib 49 29 demonstrated demonstrate VBD cord-284409-xiyeceib 49 30 the the DT cord-284409-xiyeceib 49 31 implications implication NNS cord-284409-xiyeceib 49 32 of of IN cord-284409-xiyeceib 49 33 our -PRON- PRP$ cord-284409-xiyeceib 49 34 antibody antibody NN cord-284409-xiyeceib 49 35 germline germline NN cord-284409-xiyeceib 49 36 / / SYM cord-284409-xiyeceib 49 37 maturation maturation NN cord-284409-xiyeceib 49 38 hypothesis hypothesis NN cord-284409-xiyeceib 49 39 for for IN cord-284409-xiyeceib 49 40 finding find VBG cord-284409-xiyeceib 49 41 germline germline NN cord-284409-xiyeceib 49 42 - - HYPH cord-284409-xiyeceib 49 43 like like JJ cord-284409-xiyeceib 49 44 precursors precursor NNS cord-284409-xiyeceib 49 45 , , , cord-284409-xiyeceib 49 46 intermediates intermediate NNS cord-284409-xiyeceib 49 47 as as RB cord-284409-xiyeceib 49 48 well well RB cord-284409-xiyeceib 49 49 as as IN cord-284409-xiyeceib 49 50 for for IN cord-284409-xiyeceib 49 51 designing design VBG cord-284409-xiyeceib 49 52 immunogens immunogen NNS cord-284409-xiyeceib 49 53 that that WDT cord-284409-xiyeceib 49 54 could could MD cord-284409-xiyeceib 49 55 potentially potentially RB cord-284409-xiyeceib 49 56 bind bind VB cord-284409-xiyeceib 49 57 to to IN cord-284409-xiyeceib 49 58 such such JJ cord-284409-xiyeceib 49 59 bnAb bnab NN cord-284409-xiyeceib 49 60 intermediates intermediate NNS cord-284409-xiyeceib 49 61 . . . cord-284409-xiyeceib 50 1 In in IN cord-284409-xiyeceib 50 2 this this DT cord-284409-xiyeceib 50 3 report report NN cord-284409-xiyeceib 50 4 , , , cord-284409-xiyeceib 50 5 we -PRON- PRP cord-284409-xiyeceib 50 6 discuss discuss VBP cord-284409-xiyeceib 50 7 the the DT cord-284409-xiyeceib 50 8 recent recent JJ cord-284409-xiyeceib 50 9 advancements advancement NNS cord-284409-xiyeceib 50 10 in in IN cord-284409-xiyeceib 50 11 HIV-1 HIV-1 NNP cord-284409-xiyeceib 50 12 vaccine vaccine NN cord-284409-xiyeceib 50 13 research research NN cord-284409-xiyeceib 50 14 in in IN cord-284409-xiyeceib 50 15 the the DT cord-284409-xiyeceib 50 16 context context NN cord-284409-xiyeceib 50 17 of of IN cord-284409-xiyeceib 50 18 the the DT cord-284409-xiyeceib 50 19 antibody antibody NN cord-284409-xiyeceib 50 20 germline germline NN cord-284409-xiyeceib 50 21 / / SYM cord-284409-xiyeceib 50 22 maturation maturation NN cord-284409-xiyeceib 50 23 hypothesis hypothesis NN cord-284409-xiyeceib 50 24 , , , cord-284409-xiyeceib 50 25 and and CC cord-284409-xiyeceib 50 26 highlight highlight VB cord-284409-xiyeceib 50 27 critical critical JJ cord-284409-xiyeceib 50 28 factors factor NNS cord-284409-xiyeceib 50 29 to to TO cord-284409-xiyeceib 50 30 be be VB cord-284409-xiyeceib 50 31 considered consider VBN cord-284409-xiyeceib 50 32 when when WRB cord-284409-xiyeceib 50 33 exploring explore VBG cord-284409-xiyeceib 50 34 germline germline NN cord-284409-xiyeceib 50 35 - - HYPH cord-284409-xiyeceib 50 36 like like JJ cord-284409-xiyeceib 50 37 precursors precursor NNS cord-284409-xiyeceib 50 38 and and CC cord-284409-xiyeceib 50 39 intermediates intermediate NNS cord-284409-xiyeceib 50 40 of of IN cord-284409-xiyeceib 50 41 bnAbs bnAbs NNP cord-284409-xiyeceib 50 42 . . . cord-284409-xiyeceib 51 1 We -PRON- PRP cord-284409-xiyeceib 51 2 also also RB cord-284409-xiyeceib 51 3 report report VBP cord-284409-xiyeceib 51 4 for for IN cord-284409-xiyeceib 51 5 the the DT cord-284409-xiyeceib 51 6 first first JJ cord-284409-xiyeceib 51 7 time time NN cord-284409-xiyeceib 51 8 using use VBG cord-284409-xiyeceib 51 9 454 454 CD cord-284409-xiyeceib 51 10 sequencing sequencing NN cord-284409-xiyeceib 51 11 data datum NNS cord-284409-xiyeceib 51 12 analysis analysis NN cord-284409-xiyeceib 51 13 of of IN cord-284409-xiyeceib 51 14 a a DT cord-284409-xiyeceib 51 15 human human JJ cord-284409-xiyeceib 51 16 cord cord NN cord-284409-xiyeceib 51 17 blood blood NN cord-284409-xiyeceib 51 18 IgM IgM NNP cord-284409-xiyeceib 51 19 library library NNP cord-284409-xiyeceib 51 20 to to TO cord-284409-xiyeceib 51 21 identify identify VB cord-284409-xiyeceib 51 22 putative putative JJ cord-284409-xiyeceib 51 23 germline germline JJ cord-284409-xiyeceib 51 24 precursors precursor NNS cord-284409-xiyeceib 51 25 of of IN cord-284409-xiyeceib 51 26 the the DT cord-284409-xiyeceib 51 27 heavy heavy JJ cord-284409-xiyeceib 51 28 and and CC cord-284409-xiyeceib 51 29 light light JJ cord-284409-xiyeceib 51 30 chains chain NNS cord-284409-xiyeceib 51 31 of of IN cord-284409-xiyeceib 51 32 VRC01-like VRC01-like NNP cord-284409-xiyeceib 51 33 antibodies antibody NNS cord-284409-xiyeceib 51 34 . . . cord-284409-xiyeceib 52 1 These these DT cord-284409-xiyeceib 52 2 naturally naturally RB cord-284409-xiyeceib 52 3 occurring occur VBG cord-284409-xiyeceib 52 4 cord cord NN cord-284409-xiyeceib 52 5 blood blood NN cord-284409-xiyeceib 52 6 - - HYPH cord-284409-xiyeceib 52 7 derived derive VBN cord-284409-xiyeceib 52 8 VRC01-like VRC01-like '' cord-284409-xiyeceib 52 9 heavy heavy JJ cord-284409-xiyeceib 52 10 and and CC cord-284409-xiyeceib 52 11 light light JJ cord-284409-xiyeceib 52 12 chains chain NNS cord-284409-xiyeceib 52 13 may may MD cord-284409-xiyeceib 52 14 be be VB cord-284409-xiyeceib 52 15 useful useful JJ cord-284409-xiyeceib 52 16 as as IN cord-284409-xiyeceib 52 17 putative putative JJ cord-284409-xiyeceib 52 18 templates template NNS cord-284409-xiyeceib 52 19 for for IN cord-284409-xiyeceib 52 20 designing design VBG cord-284409-xiyeceib 52 21 novel novel JJ cord-284409-xiyeceib 52 22 vaccine vaccine NN cord-284409-xiyeceib 52 23 immunogens immunogen NNS cord-284409-xiyeceib 52 24 that that WDT cord-284409-xiyeceib 52 25 can can MD cord-284409-xiyeceib 52 26 lead lead VB cord-284409-xiyeceib 52 27 to to IN cord-284409-xiyeceib 52 28 the the DT cord-284409-xiyeceib 52 29 elicitation elicitation NN cord-284409-xiyeceib 52 30 of of IN cord-284409-xiyeceib 52 31 VRC01-like VRC01-like NNP cord-284409-xiyeceib 52 32 antibodies antibody NNS cord-284409-xiyeceib 52 33 and and CC cord-284409-xiyeceib 52 34 for for IN cord-284409-xiyeceib 52 35 understanding understand VBG cord-284409-xiyeceib 52 36 the the DT cord-284409-xiyeceib 52 37 maturation maturation NN cord-284409-xiyeceib 52 38 pathways pathway NNS cord-284409-xiyeceib 52 39 of of IN cord-284409-xiyeceib 52 40 this this DT cord-284409-xiyeceib 52 41 bnAb bnab NN cord-284409-xiyeceib 52 42 . . . cord-284409-xiyeceib 53 1 Still still RB cord-284409-xiyeceib 53 2 there there EX cord-284409-xiyeceib 53 3 are be VBP cord-284409-xiyeceib 53 4 major major JJ cord-284409-xiyeceib 53 5 challenges challenge NNS cord-284409-xiyeceib 53 6 to to TO cord-284409-xiyeceib 53 7 be be VB cord-284409-xiyeceib 53 8 overcome overcome VBN cord-284409-xiyeceib 53 9 . . . cord-284409-xiyeceib 54 1 New new JJ cord-284409-xiyeceib 54 2 empirical empirical JJ cord-284409-xiyeceib 54 3 and and CC cord-284409-xiyeceib 54 4 semiempirical semiempirical JJ cord-284409-xiyeceib 54 5 approaches approach NNS cord-284409-xiyeceib 54 6 could could MD cord-284409-xiyeceib 54 7 be be VB cord-284409-xiyeceib 54 8 successful successful JJ cord-284409-xiyeceib 54 9 ; ; : cord-284409-xiyeceib 54 10 recently recently RB cord-284409-xiyeceib 54 11 , , , cord-284409-xiyeceib 54 12 new new JJ cord-284409-xiyeceib 54 13 paradigms paradigm NNS cord-284409-xiyeceib 54 14 were be VBD cord-284409-xiyeceib 54 15 discussed discuss VBN cord-284409-xiyeceib 54 16 that that WDT cord-284409-xiyeceib 54 17 could could MD cord-284409-xiyeceib 54 18 better well RBR cord-284409-xiyeceib 54 19 fit fit VB cord-284409-xiyeceib 54 20 our -PRON- PRP$ cord-284409-xiyeceib 54 21 increased increased JJ cord-284409-xiyeceib 54 22 knowledge knowledge NN cord-284409-xiyeceib 54 23 of of IN cord-284409-xiyeceib 54 24 HIV HIV NNP cord-284409-xiyeceib 54 25 immunopathology immunopathology NN cord-284409-xiyeceib 54 26 and and CC cord-284409-xiyeceib 54 27 which which WDT cord-284409-xiyeceib 54 28 could could MD cord-284409-xiyeceib 54 29 possibly possibly RB cord-284409-xiyeceib 54 30 be be VB cord-284409-xiyeceib 54 31 more more RBR cord-284409-xiyeceib 54 32 helpful helpful JJ cord-284409-xiyeceib 54 33 in in IN cord-284409-xiyeceib 54 34 guiding guide VBG cord-284409-xiyeceib 54 35 future future JJ cord-284409-xiyeceib 54 36 vaccine vaccine NN cord-284409-xiyeceib 54 37 research research NN cord-284409-xiyeceib 54 38 than than IN cord-284409-xiyeceib 54 39 did do VBD cord-284409-xiyeceib 54 40 past past JJ cord-284409-xiyeceib 54 41 unsuccessful unsuccessful JJ cord-284409-xiyeceib 54 42 approaches approach NNS cord-284409-xiyeceib 54 43 ( ( -LRB- cord-284409-xiyeceib 54 44 17 17 CD cord-284409-xiyeceib 54 45 ) ) -RRB- cord-284409-xiyeceib 54 46 . . . cord-284409-xiyeceib 55 1 DNA dna NN cord-284409-xiyeceib 55 2 isolation isolation NN cord-284409-xiyeceib 55 3 , , , cord-284409-xiyeceib 55 4 amplification amplification NN cord-284409-xiyeceib 55 5 , , , cord-284409-xiyeceib 55 6 and and CC cord-284409-xiyeceib 55 7 454 454 CD cord-284409-xiyeceib 55 8 sequencing sequencing NN cord-284409-xiyeceib 55 9 of of IN cord-284409-xiyeceib 55 10 the the DT cord-284409-xiyeceib 55 11 human human JJ cord-284409-xiyeceib 55 12 cord cord NN cord-284409-xiyeceib 55 13 blood blood NNP cord-284409-xiyeceib 55 14 IgM IgM NNP cord-284409-xiyeceib 55 15 library library NNP cord-284409-xiyeceib 55 16 were be VBD cord-284409-xiyeceib 55 17 previously previously RB cord-284409-xiyeceib 55 18 described describe VBN cord-284409-xiyeceib 55 19 in in IN cord-284409-xiyeceib 55 20 detail detail NN cord-284409-xiyeceib 55 21 ( ( -LRB- cord-284409-xiyeceib 55 22 18 18 CD cord-284409-xiyeceib 55 23 , , , cord-284409-xiyeceib 55 24 19 19 CD cord-284409-xiyeceib 55 25 ) ) -RRB- cord-284409-xiyeceib 55 26 . . . cord-284409-xiyeceib 56 1 For for IN cord-284409-xiyeceib 56 2 quality quality NN cord-284409-xiyeceib 56 3 control control NN cord-284409-xiyeceib 56 4 , , , cord-284409-xiyeceib 56 5 we -PRON- PRP cord-284409-xiyeceib 56 6 trimmed trim VBD cord-284409-xiyeceib 56 7 the the DT cord-284409-xiyeceib 56 8 454 454 CD cord-284409-xiyeceib 56 9 sequence sequence NN cord-284409-xiyeceib 56 10 reads read VBZ cord-284409-xiyeceib 56 11 and and CC cord-284409-xiyeceib 56 12 retained retain VBD cord-284409-xiyeceib 56 13 only only RB cord-284409-xiyeceib 56 14 sequences sequence NNS cord-284409-xiyeceib 56 15 with with IN cord-284409-xiyeceib 56 16 lengths length NNS cord-284409-xiyeceib 56 17 of of IN cord-284409-xiyeceib 56 18 more more JJR cord-284409-xiyeceib 56 19 than than IN cord-284409-xiyeceib 56 20 300 300 CD cord-284409-xiyeceib 56 21 nucleotides nucleotide NNS cord-284409-xiyeceib 56 22 , , , cord-284409-xiyeceib 56 23 covering cover VBG cord-284409-xiyeceib 56 24 the the DT cord-284409-xiyeceib 56 25 entire entire JJ cord-284409-xiyeceib 56 26 antibody antibody NN cord-284409-xiyeceib 56 27 variable variable NN cord-284409-xiyeceib 56 28 domains domain NNS cord-284409-xiyeceib 56 29 consisting consist VBG cord-284409-xiyeceib 56 30 of of IN cord-284409-xiyeceib 56 31 all all DT cord-284409-xiyeceib 56 32 three three CD cord-284409-xiyeceib 56 33 complementarity complementarity NN cord-284409-xiyeceib 56 34 determining determine VBG cord-284409-xiyeceib 56 35 regions region NNS cord-284409-xiyeceib 56 36 ( ( -LRB- cord-284409-xiyeceib 56 37 CDRs cdr NNS cord-284409-xiyeceib 56 38 ) ) -RRB- cord-284409-xiyeceib 56 39 along along IN cord-284409-xiyeceib 56 40 with with IN cord-284409-xiyeceib 56 41 framework framework NN cord-284409-xiyeceib 56 42 regions region NNS cord-284409-xiyeceib 56 43 ( ( -LRB- cord-284409-xiyeceib 56 44 FRs FRs NNP cord-284409-xiyeceib 56 45 ) ) -RRB- cord-284409-xiyeceib 56 46 . . . cord-284409-xiyeceib 57 1 We -PRON- PRP cord-284409-xiyeceib 57 2 used use VBD cord-284409-xiyeceib 57 3 IMGT IMGT NNP cord-284409-xiyeceib 57 4 / / SYM cord-284409-xiyeceib 57 5 HighV HighV NNP cord-284409-xiyeceib 57 6 - - HYPH cord-284409-xiyeceib 57 7 QUEST QUEST NNP cord-284409-xiyeceib 57 8 for for IN cord-284409-xiyeceib 57 9 immunogenetic immunogenetic JJ cord-284409-xiyeceib 57 10 and and CC cord-284409-xiyeceib 57 11 statistical statistical JJ cord-284409-xiyeceib 57 12 analyses analysis NNS cord-284409-xiyeceib 57 13 ( ( -LRB- cord-284409-xiyeceib 57 14 20 20 CD cord-284409-xiyeceib 57 15 ) ) -RRB- cord-284409-xiyeceib 57 16 . . . cord-284409-xiyeceib 58 1 The the DT cord-284409-xiyeceib 58 2 output output NN cord-284409-xiyeceib 58 3 results result NNS cord-284409-xiyeceib 58 4 from from IN cord-284409-xiyeceib 58 5 the the DT cord-284409-xiyeceib 58 6 IMGT IMGT NNP cord-284409-xiyeceib 58 7 / / SYM cord-284409-xiyeceib 58 8 HighV HighV NNP cord-284409-xiyeceib 58 9 - - HYPH cord-284409-xiyeceib 58 10 QUEST quest NN cord-284409-xiyeceib 58 11 analysis analysis NN cord-284409-xiyeceib 58 12 were be VBD cord-284409-xiyeceib 58 13 stored store VBN cord-284409-xiyeceib 58 14 in in IN cord-284409-xiyeceib 58 15 a a DT cord-284409-xiyeceib 58 16 local local JJ cord-284409-xiyeceib 58 17 PostgreSQL PostgreSQL NNP cord-284409-xiyeceib 58 18 database database NN cord-284409-xiyeceib 58 19 , , , cord-284409-xiyeceib 58 20 and and CC cord-284409-xiyeceib 58 21 structured structured JJ cord-284409-xiyeceib 58 22 query query NN cord-284409-xiyeceib 58 23 language language NN cord-284409-xiyeceib 58 24 ( ( -LRB- cord-284409-xiyeceib 58 25 SQL SQL NNP cord-284409-xiyeceib 58 26 ) ) -RRB- cord-284409-xiyeceib 58 27 was be VBD cord-284409-xiyeceib 58 28 used use VBN cord-284409-xiyeceib 58 29 to to TO cord-284409-xiyeceib 58 30 retrieve retrieve VB cord-284409-xiyeceib 58 31 the the DT cord-284409-xiyeceib 58 32 data datum NNS cord-284409-xiyeceib 58 33 for for IN cord-284409-xiyeceib 58 34 further further JJ cord-284409-xiyeceib 58 35 analysis analysis NN cord-284409-xiyeceib 58 36 . . . cord-284409-xiyeceib 59 1 Statistical statistical JJ cord-284409-xiyeceib 59 2 calculations calculation NNS cord-284409-xiyeceib 59 3 were be VBD cord-284409-xiyeceib 59 4 carried carry VBN cord-284409-xiyeceib 59 5 out out RP cord-284409-xiyeceib 59 6 using use VBG cord-284409-xiyeceib 59 7 JMP10 jmp10 ADD cord-284409-xiyeceib 60 1 ® ® , cord-284409-xiyeceib 60 2 statistical statistical JJ cord-284409-xiyeceib 60 3 software software NN cord-284409-xiyeceib 60 4 ( ( -LRB- cord-284409-xiyeceib 60 5 SAS SAS NNP cord-284409-xiyeceib 60 6 Institute Institute NNP cord-284409-xiyeceib 60 7 , , , cord-284409-xiyeceib 60 8 Cary Cary NNP cord-284409-xiyeceib 60 9 , , , cord-284409-xiyeceib 60 10 NC NC NNP cord-284409-xiyeceib 60 11 , , , cord-284409-xiyeceib 60 12 USA USA NNP cord-284409-xiyeceib 60 13 ) ) -RRB- cord-284409-xiyeceib 60 14 . . . cord-284409-xiyeceib 61 1 Antibody antibody NN cord-284409-xiyeceib 61 2 sequences sequence NNS cord-284409-xiyeceib 61 3 from from IN cord-284409-xiyeceib 61 4 IGHV1 ighv1 NN cord-284409-xiyeceib 61 5 - - SYM cord-284409-xiyeceib 61 6 2 2 CD cord-284409-xiyeceib 61 7 and and CC cord-284409-xiyeceib 61 8 IGK3 IGK3 NNP cord-284409-xiyeceib 61 9 - - HYPH cord-284409-xiyeceib 61 10 11 11 CD cord-284409-xiyeceib 61 11 lineages lineage NNS cord-284409-xiyeceib 61 12 were be VBD cord-284409-xiyeceib 61 13 retrieved retrieve VBN cord-284409-xiyeceib 61 14 from from IN cord-284409-xiyeceib 61 15 our -PRON- PRP$ cord-284409-xiyeceib 61 16 local local JJ cord-284409-xiyeceib 61 17 antibodyome antibodyome NN cord-284409-xiyeceib 61 18 database database NN cord-284409-xiyeceib 61 19 consisting consist VBG cord-284409-xiyeceib 61 20 of of IN cord-284409-xiyeceib 61 21 immunogenetic immunogenetic JJ cord-284409-xiyeceib 61 22 data datum NNS cord-284409-xiyeceib 61 23 derived derive VBN cord-284409-xiyeceib 61 24 from from IN cord-284409-xiyeceib 61 25 454 454 CD cord-284409-xiyeceib 61 26 sequencing sequencing NN cord-284409-xiyeceib 61 27 of of IN cord-284409-xiyeceib 61 28 the the DT cord-284409-xiyeceib 61 29 human human JJ cord-284409-xiyeceib 61 30 cord cord NN cord-284409-xiyeceib 61 31 blood blood NNP cord-284409-xiyeceib 61 32 IgM IgM NNP cord-284409-xiyeceib 61 33 library library NNP cord-284409-xiyeceib 61 34 using use VBG cord-284409-xiyeceib 61 35 SQL SQL NNP cord-284409-xiyeceib 61 36 statements statement NNS cord-284409-xiyeceib 61 37 . . . cord-284409-xiyeceib 62 1 Amino amino NN cord-284409-xiyeceib 62 2 acid acid NN cord-284409-xiyeceib 62 3 sequence sequence NN cord-284409-xiyeceib 62 4 identities identity NNS cord-284409-xiyeceib 62 5 between between IN cord-284409-xiyeceib 62 6 each each DT cord-284409-xiyeceib 62 7 of of IN cord-284409-xiyeceib 62 8 the the DT cord-284409-xiyeceib 62 9 selected select VBN cord-284409-xiyeceib 62 10 lineage lineage NN cord-284409-xiyeceib 62 11 sequences sequence NNS cord-284409-xiyeceib 62 12 from from IN cord-284409-xiyeceib 62 13 the the DT cord-284409-xiyeceib 62 14 454 454 CD cord-284409-xiyeceib 62 15 sequence sequence NN cord-284409-xiyeceib 62 16 data datum NNS cord-284409-xiyeceib 62 17 and and CC cord-284409-xiyeceib 62 18 pertinent pertinent JJ cord-284409-xiyeceib 62 19 germline germline JJ cord-284409-xiyeceib 62 20 sequences sequence NNS cord-284409-xiyeceib 62 21 were be VBD cord-284409-xiyeceib 62 22 calculated calculate VBN cord-284409-xiyeceib 62 23 based base VBN cord-284409-xiyeceib 62 24 on on IN cord-284409-xiyeceib 62 25 the the DT cord-284409-xiyeceib 62 26 pairwise pairwise JJ cord-284409-xiyeceib 62 27 alignment alignment NN cord-284409-xiyeceib 62 28 using use VBG cord-284409-xiyeceib 62 29 local local JJ cord-284409-xiyeceib 62 30 BLAST blast NN cord-284409-xiyeceib 62 31 as as IN cord-284409-xiyeceib 62 32 implemented implement VBN cord-284409-xiyeceib 62 33 in in IN cord-284409-xiyeceib 62 34 BioEdit BioEdit NNP cord-284409-xiyeceib 62 35 v7.0.9 v7.0.9 NNP cord-284409-xiyeceib 62 36 ( ( -LRB- cord-284409-xiyeceib 62 37 21 21 CD cord-284409-xiyeceib 62 38 ) ) -RRB- cord-284409-xiyeceib 62 39 . . . cord-284409-xiyeceib 63 1 Phylogenetic phylogenetic JJ cord-284409-xiyeceib 63 2 analysis analysis NN cord-284409-xiyeceib 63 3 was be VBD cord-284409-xiyeceib 63 4 carried carry VBN cord-284409-xiyeceib 63 5 out out RP cord-284409-xiyeceib 63 6 using use VBG cord-284409-xiyeceib 63 7 the the DT cord-284409-xiyeceib 63 8 Archaeopteryx Archaeopteryx NNP cord-284409-xiyeceib 63 9 software software NN cord-284409-xiyeceib 63 10 ( ( -LRB- cord-284409-xiyeceib 63 11 22 22 CD cord-284409-xiyeceib 63 12 ) ) -RRB- cord-284409-xiyeceib 63 13 . . . cord-284409-xiyeceib 64 1 Our -PRON- PRP$ cord-284409-xiyeceib 64 2 earlier early JJR cord-284409-xiyeceib 64 3 observation observation NN cord-284409-xiyeceib 64 4 of of IN cord-284409-xiyeceib 64 5 the the DT cord-284409-xiyeceib 64 6 extensive extensive JJ cord-284409-xiyeceib 64 7 maturation maturation NN cord-284409-xiyeceib 64 8 of of IN cord-284409-xiyeceib 64 9 HIV-1 HIV-1 NNP cord-284409-xiyeceib 64 10 bnAbs bnAbs NNP cord-284409-xiyeceib 64 11 in in IN cord-284409-xiyeceib 64 12 contrast contrast NN cord-284409-xiyeceib 64 13 to to IN cord-284409-xiyeceib 64 14 those those DT cord-284409-xiyeceib 64 15 against against IN cord-284409-xiyeceib 64 16 some some DT cord-284409-xiyeceib 64 17 viruses virus NNS cord-284409-xiyeceib 64 18 causing cause VBG cord-284409-xiyeceib 64 19 acute acute JJ cord-284409-xiyeceib 64 20 infections infection NNS cord-284409-xiyeceib 64 21 led lead VBD cord-284409-xiyeceib 64 22 to to IN cord-284409-xiyeceib 64 23 the the DT cord-284409-xiyeceib 64 24 antibody antibody NN cord-284409-xiyeceib 64 25 germline germline NN cord-284409-xiyeceib 64 26 / / SYM cord-284409-xiyeceib 64 27 maturation maturation NN cord-284409-xiyeceib 64 28 hypothesis hypothesis NN cord-284409-xiyeceib 64 29 ( ( -LRB- cord-284409-xiyeceib 64 30 9 9 CD cord-284409-xiyeceib 64 31 - - SYM cord-284409-xiyeceib 64 32 11 11 CD cord-284409-xiyeceib 64 33 , , , cord-284409-xiyeceib 64 34 13 13 CD cord-284409-xiyeceib 64 35 , , , cord-284409-xiyeceib 64 36 14 14 CD cord-284409-xiyeceib 64 37 ) ) -RRB- cord-284409-xiyeceib 64 38 . . . cord-284409-xiyeceib 65 1 According accord VBG cord-284409-xiyeceib 65 2 to to IN cord-284409-xiyeceib 65 3 this this DT cord-284409-xiyeceib 65 4 hypothesis hypothesis NN cord-284409-xiyeceib 65 5 , , , cord-284409-xiyeceib 65 6 it -PRON- PRP cord-284409-xiyeceib 65 7 is be VBZ cord-284409-xiyeceib 65 8 critical critical JJ cord-284409-xiyeceib 65 9 to to TO cord-284409-xiyeceib 65 10 identify identify VB cord-284409-xiyeceib 65 11 immunogens immunogen NNS cord-284409-xiyeceib 65 12 that that WDT cord-284409-xiyeceib 65 13 would would MD cord-284409-xiyeceib 65 14 bind bind VB cord-284409-xiyeceib 65 15 to to IN cord-284409-xiyeceib 65 16 germline germline JJ cord-284409-xiyeceib 65 17 and/or and/or CC cord-284409-xiyeceib 65 18 intermediate intermediate JJ cord-284409-xiyeceib 65 19 antibodies antibody NNS cord-284409-xiyeceib 65 20 of of IN cord-284409-xiyeceib 65 21 bnAbs bnAbs NNP cord-284409-xiyeceib 65 22 , , , cord-284409-xiyeceib 65 23 as as RB cord-284409-xiyeceib 65 24 well well RB cord-284409-xiyeceib 65 25 as as IN cord-284409-xiyeceib 65 26 the the DT cord-284409-xiyeceib 65 27 exploration exploration NN cord-284409-xiyeceib 65 28 of of IN cord-284409-xiyeceib 65 29 antibodyomes antibodyomes NNP cord-284409-xiyeceib 65 30 could could MD cord-284409-xiyeceib 65 31 be be VB cord-284409-xiyeceib 65 32 useful useful JJ cord-284409-xiyeceib 65 33 for for IN cord-284409-xiyeceib 65 34 identifying identify VBG cord-284409-xiyeceib 65 35 such such JJ cord-284409-xiyeceib 65 36 immunogens immunogen NNS cord-284409-xiyeceib 65 37 ( ( -LRB- cord-284409-xiyeceib 65 38 14 14 CD cord-284409-xiyeceib 65 39 ) ) -RRB- cord-284409-xiyeceib 65 40 . . . cord-284409-xiyeceib 66 1 Figure figure NN cord-284409-xiyeceib 66 2 1 1 CD cord-284409-xiyeceib 66 3 describes describe VBZ cord-284409-xiyeceib 66 4 the the DT cord-284409-xiyeceib 66 5 timeline timeline NN cord-284409-xiyeceib 66 6 involving involve VBG cord-284409-xiyeceib 66 7 some some DT cord-284409-xiyeceib 66 8 of of IN cord-284409-xiyeceib 66 9 the the DT cord-284409-xiyeceib 66 10 key key JJ cord-284409-xiyeceib 66 11 developments development NNS cord-284409-xiyeceib 66 12 in in IN cord-284409-xiyeceib 66 13 current current JJ cord-284409-xiyeceib 66 14 HIV-1 HIV-1 NNP cord-284409-xiyeceib 66 15 vaccine vaccine NN cord-284409-xiyeceib 66 16 research research NN cord-284409-xiyeceib 66 17 focused focus VBD cord-284409-xiyeceib 66 18 on on IN cord-284409-xiyeceib 66 19 antibody antibody NN cord-284409-xiyeceib 66 20 germline germline NN cord-284409-xiyeceib 66 21 - - HYPH cord-284409-xiyeceib 66 22 like like JJ cord-284409-xiyeceib 66 23 intermediates intermediate NNS cord-284409-xiyeceib 66 24 and and CC cord-284409-xiyeceib 66 25 maturation maturation NN cord-284409-xiyeceib 66 26 pathways pathway NNS cord-284409-xiyeceib 66 27 of of IN cord-284409-xiyeceib 66 28 bnAbs bnAbs NNP cord-284409-xiyeceib 66 29 . . . cord-284409-xiyeceib 67 1 Major major JJ cord-284409-xiyeceib 67 2 research research NN cord-284409-xiyeceib 67 3 efforts effort NNS cord-284409-xiyeceib 67 4 in in IN cord-284409-xiyeceib 67 5 this this DT cord-284409-xiyeceib 67 6 direction direction NN cord-284409-xiyeceib 67 7 were be VBD cord-284409-xiyeceib 67 8 spearheaded spearhead VBN cord-284409-xiyeceib 67 9 by by IN cord-284409-xiyeceib 68 1 deep deep JJ cord-284409-xiyeceib 68 2 sequencing sequencing NN cord-284409-xiyeceib 68 3 and and CC cord-284409-xiyeceib 68 4 structural structural JJ cord-284409-xiyeceib 68 5 biology biology NN cord-284409-xiyeceib 68 6 studies study NNS cord-284409-xiyeceib 68 7 of of IN cord-284409-xiyeceib 68 8 VRC01-like VRC01-like NNP cord-284409-xiyeceib 68 9 and and CC cord-284409-xiyeceib 68 10 other other JJ cord-284409-xiyeceib 68 11 CD4-binding cd4-binding NN cord-284409-xiyeceib 68 12 site site NN cord-284409-xiyeceib 68 13 ( ( -LRB- cord-284409-xiyeceib 68 14 CD4b CD4b NNP cord-284409-xiyeceib 68 15 ) ) -RRB- cord-284409-xiyeceib 68 16 antibodies antibody NNS cord-284409-xiyeceib 68 17 from from IN cord-284409-xiyeceib 68 18 HIV-1-infected hiv-1-infecte VBN cord-284409-xiyeceib 68 19 individuals individual NNS cord-284409-xiyeceib 68 20 . . . cord-284409-xiyeceib 69 1 These these DT cord-284409-xiyeceib 69 2 studies study NNS cord-284409-xiyeceib 69 3 delineated delineate VBD cord-284409-xiyeceib 69 4 possible possible JJ cord-284409-xiyeceib 69 5 maturation maturation NN cord-284409-xiyeceib 69 6 pathways pathway NNS cord-284409-xiyeceib 69 7 of of IN cord-284409-xiyeceib 69 8 such such JJ cord-284409-xiyeceib 69 9 antibodies antibody NNS cord-284409-xiyeceib 69 10 with with IN cord-284409-xiyeceib 69 11 high high JJ cord-284409-xiyeceib 69 12 levels level NNS cord-284409-xiyeceib 69 13 of of IN cord-284409-xiyeceib 69 14 somatic somatic JJ cord-284409-xiyeceib 69 15 mutations mutation NNS cord-284409-xiyeceib 69 16 and and CC cord-284409-xiyeceib 69 17 convergence convergence NN cord-284409-xiyeceib 69 18 in in IN cord-284409-xiyeceib 69 19 antibody antibody NN cord-284409-xiyeceib 69 20 recognition recognition NN cord-284409-xiyeceib 69 21 ( ( -LRB- cord-284409-xiyeceib 69 22 23 23 CD cord-284409-xiyeceib 69 23 , , , cord-284409-xiyeceib 69 24 24 24 CD cord-284409-xiyeceib 69 25 ) ) -RRB- cord-284409-xiyeceib 69 26 . . . cord-284409-xiyeceib 70 1 Both both DT cord-284409-xiyeceib 70 2 studies study NNS cord-284409-xiyeceib 70 3 revealed reveal VBD cord-284409-xiyeceib 70 4 that that IN cord-284409-xiyeceib 70 5 the the DT cord-284409-xiyeceib 70 6 putative putative JJ cord-284409-xiyeceib 70 7 germline germline JJ cord-284409-xiyeceib 70 8 precursors precursor NNS cord-284409-xiyeceib 70 9 of of IN cord-284409-xiyeceib 70 10 these these DT cord-284409-xiyeceib 70 11 antibodies antibody NNS cord-284409-xiyeceib 70 12 had have VBD cord-284409-xiyeceib 70 13 weak weak JJ cord-284409-xiyeceib 70 14 or or CC cord-284409-xiyeceib 70 15 no no DT cord-284409-xiyeceib 70 16 apparent apparent JJ cord-284409-xiyeceib 70 17 affinity affinity NN cord-284409-xiyeceib 70 18 for for IN cord-284409-xiyeceib 70 19 Env Env NNP cord-284409-xiyeceib 70 20 , , , cord-284409-xiyeceib 70 21 and and CC cord-284409-xiyeceib 70 22 acquisition acquisition NN cord-284409-xiyeceib 70 23 of of IN cord-284409-xiyeceib 70 24 a a DT cord-284409-xiyeceib 70 25 large large JJ cord-284409-xiyeceib 70 26 number number NN cord-284409-xiyeceib 70 27 of of IN cord-284409-xiyeceib 70 28 somatic somatic JJ cord-284409-xiyeceib 70 29 mutations mutation NNS cord-284409-xiyeceib 70 30 were be VBD cord-284409-xiyeceib 70 31 needed need VBN cord-284409-xiyeceib 70 32 for for IN cord-284409-xiyeceib 70 33 the the DT cord-284409-xiyeceib 70 34 breadth breadth NN cord-284409-xiyeceib 70 35 and and CC cord-284409-xiyeceib 70 36 potency potency NN cord-284409-xiyeceib 70 37 of of IN cord-284409-xiyeceib 70 38 these these DT cord-284409-xiyeceib 70 39 antibodies antibody NNS cord-284409-xiyeceib 70 40 . . . cord-284409-xiyeceib 71 1 These these DT cord-284409-xiyeceib 71 2 studies study NNS cord-284409-xiyeceib 71 3 also also RB cord-284409-xiyeceib 71 4 explored explore VBD cord-284409-xiyeceib 71 5 antibody antibody NN cord-284409-xiyeceib 71 6 diversity diversity NN cord-284409-xiyeceib 71 7 and and CC cord-284409-xiyeceib 71 8 found find VBD cord-284409-xiyeceib 71 9 many many JJ cord-284409-xiyeceib 71 10 intermediates intermediate NNS cord-284409-xiyeceib 71 11 of of IN cord-284409-xiyeceib 71 12 similar similar JJ cord-284409-xiyeceib 71 13 lineages lineage NNS cord-284409-xiyeceib 71 14 of of IN cord-284409-xiyeceib 71 15 the the DT cord-284409-xiyeceib 71 16 heavy heavy JJ cord-284409-xiyeceib 71 17 chain chain NN cord-284409-xiyeceib 71 18 genes gene NNS cord-284409-xiyeceib 71 19 from from IN cord-284409-xiyeceib 71 20 the the DT cord-284409-xiyeceib 71 21 two two CD cord-284409-xiyeceib 71 22 IGHV IGHV NNP cord-284409-xiyeceib 71 23 families family NNS cord-284409-xiyeceib 71 24 VH1 VH1 NNP cord-284409-xiyeceib 71 25 - - HYPH cord-284409-xiyeceib 71 26 2 2 NNP cord-284409-xiyeceib 71 27 and and CC cord-284409-xiyeceib 71 28 VH1 VH1 NNP cord-284409-xiyeceib 71 29 - - : cord-284409-xiyeceib 71 30 46 46 CD cord-284409-xiyeceib 71 31 that that WDT cord-284409-xiyeceib 71 32 paired pair VBN cord-284409-xiyeceib 71 33 with with IN cord-284409-xiyeceib 71 34 different different JJ cord-284409-xiyeceib 71 35 light light JJ cord-284409-xiyeceib 71 36 chain chain NN cord-284409-xiyeceib 71 37 genes gene NNS cord-284409-xiyeceib 71 38 . . . cord-284409-xiyeceib 72 1 Thus thus RB cord-284409-xiyeceib 72 2 , , , cord-284409-xiyeceib 72 3 analysis analysis NN cord-284409-xiyeceib 72 4 of of IN cord-284409-xiyeceib 72 5 the the DT cord-284409-xiyeceib 72 6 VRC01-related VRC01-related NNP cord-284409-xiyeceib 72 7 antibodyome antibodyome NNP cord-284409-xiyeceib 72 8 from from IN cord-284409-xiyeceib 72 9 HIV-1 HIV-1 NNP cord-284409-xiyeceib 72 10 infected infect VBD cord-284409-xiyeceib 72 11 patients patient NNS cord-284409-xiyeceib 72 12 revealed reveal VBD cord-284409-xiyeceib 72 13 B b NN cord-284409-xiyeceib 72 14 cell cell NN cord-284409-xiyeceib 72 15 maturation maturation NN cord-284409-xiyeceib 72 16 pathways pathway NNS cord-284409-xiyeceib 72 17 that that WDT cord-284409-xiyeceib 72 18 may may MD cord-284409-xiyeceib 72 19 help help VB cord-284409-xiyeceib 72 20 guide guide VB cord-284409-xiyeceib 72 21 the the DT cord-284409-xiyeceib 72 22 vaccine vaccine NN cord-284409-xiyeceib 72 23 - - HYPH cord-284409-xiyeceib 72 24 induced induce VBN cord-284409-xiyeceib 72 25 elicitation elicitation NN cord-284409-xiyeceib 72 26 of of IN cord-284409-xiyeceib 72 27 such such JJ cord-284409-xiyeceib 72 28 antibodies antibody NNS cord-284409-xiyeceib 72 29 . . . cord-284409-xiyeceib 73 1 However however RB cord-284409-xiyeceib 73 2 , , , cord-284409-xiyeceib 73 3 if if IN cord-284409-xiyeceib 73 4 we -PRON- PRP cord-284409-xiyeceib 73 5 could could MD cord-284409-xiyeceib 73 6 find find VB cord-284409-xiyeceib 73 7 germline germline NN cord-284409-xiyeceib 73 8 - - HYPH cord-284409-xiyeceib 73 9 like like JJ cord-284409-xiyeceib 73 10 intermediates intermediate NNS cord-284409-xiyeceib 73 11 of of IN cord-284409-xiyeceib 73 12 such such JJ cord-284409-xiyeceib 73 13 bnAbs bnabs NN cord-284409-xiyeceib 73 14 from from IN cord-284409-xiyeceib 73 15 a a DT cord-284409-xiyeceib 73 16 naïve naïve JJ cord-284409-xiyeceib 73 17 antibody antibody NN cord-284409-xiyeceib 73 18 repertoire repertoire NN cord-284409-xiyeceib 73 19 , , , cord-284409-xiyeceib 73 20 then then RB cord-284409-xiyeceib 73 21 www.frontiersin.org www.frontiersin.org IN cord-284409-xiyeceib 73 22 potential potential JJ cord-284409-xiyeceib 73 23 vaccine vaccine NN cord-284409-xiyeceib 73 24 immunogens immunogen NNS cord-284409-xiyeceib 73 25 developed develop VBD cord-284409-xiyeceib 73 26 based base VBN cord-284409-xiyeceib 73 27 on on IN cord-284409-xiyeceib 73 28 those those DT cord-284409-xiyeceib 73 29 templates template NNS cord-284409-xiyeceib 73 30 would would MD cord-284409-xiyeceib 73 31 stimulate stimulate VB cord-284409-xiyeceib 73 32 an an DT cord-284409-xiyeceib 73 33 adequate adequate JJ cord-284409-xiyeceib 73 34 B b NN cord-284409-xiyeceib 73 35 cell cell NN cord-284409-xiyeceib 73 36 immune immune JJ cord-284409-xiyeceib 73 37 response response NN cord-284409-xiyeceib 73 38 in in IN cord-284409-xiyeceib 73 39 healthy healthy JJ cord-284409-xiyeceib 73 40 humans human NNS cord-284409-xiyeceib 73 41 . . . cord-284409-xiyeceib 74 1 To to IN cord-284409-xiyeceib 74 2 this this DT cord-284409-xiyeceib 74 3 end end NN cord-284409-xiyeceib 74 4 , , , cord-284409-xiyeceib 74 5 we -PRON- PRP cord-284409-xiyeceib 74 6 identified identify VBD cord-284409-xiyeceib 74 7 VRC01-like vrc01-like IN cord-284409-xiyeceib 74 8 intermediate intermediate JJ cord-284409-xiyeceib 74 9 antibodies antibody NNS cord-284409-xiyeceib 74 10 from from IN cord-284409-xiyeceib 74 11 a a DT cord-284409-xiyeceib 74 12 naïve naïve JJ cord-284409-xiyeceib 74 13 antibody antibody NN cord-284409-xiyeceib 74 14 library library NN cord-284409-xiyeceib 74 15 of of IN cord-284409-xiyeceib 74 16 human human JJ cord-284409-xiyeceib 74 17 cord cord NN cord-284409-xiyeceib 74 18 blood blood NN cord-284409-xiyeceib 74 19 , , , cord-284409-xiyeceib 74 20 which which WDT cord-284409-xiyeceib 74 21 is be VBZ cord-284409-xiyeceib 74 22 presented present VBN cord-284409-xiyeceib 74 23 later later RB cord-284409-xiyeceib 74 24 in in IN cord-284409-xiyeceib 74 25 the the DT cord-284409-xiyeceib 74 26 text text NN cord-284409-xiyeceib 74 27 . . . cord-284409-xiyeceib 75 1 We -PRON- PRP cord-284409-xiyeceib 75 2 previously previously RB cord-284409-xiyeceib 75 3 analyzed analyze VBD cord-284409-xiyeceib 75 4 the the DT cord-284409-xiyeceib 75 5 IgM IgM NNP cord-284409-xiyeceib 75 6 repertoires repertoire NNS cord-284409-xiyeceib 75 7 of of IN cord-284409-xiyeceib 75 8 healthy healthy JJ cord-284409-xiyeceib 75 9 individuals individual NNS cord-284409-xiyeceib 75 10 and and CC cord-284409-xiyeceib 75 11 identified identify VBD cord-284409-xiyeceib 75 12 several several JJ cord-284409-xiyeceib 75 13 intermediates intermediate NNS cord-284409-xiyeceib 75 14 of of IN cord-284409-xiyeceib 75 15 b12 b12 NN cord-284409-xiyeceib 75 16 from from IN cord-284409-xiyeceib 75 17 the the DT cord-284409-xiyeceib 75 18 VH1 VH1 NNP cord-284409-xiyeceib 75 19 - - HYPH cord-284409-xiyeceib 75 20 3 3 CD cord-284409-xiyeceib 75 21 gene gene NN cord-284409-xiyeceib 75 22 family family NN cord-284409-xiyeceib 75 23 ( ( -LRB- cord-284409-xiyeceib 75 24 15 15 CD cord-284409-xiyeceib 75 25 ) ) -RRB- cord-284409-xiyeceib 75 26 . . . cord-284409-xiyeceib 76 1 Sequence sequence NN cord-284409-xiyeceib 76 2 analysis analysis NN cord-284409-xiyeceib 76 3 of of IN cord-284409-xiyeceib 76 4 28,925 28,925 CD cord-284409-xiyeceib 76 5 unique unique JJ cord-284409-xiyeceib 76 6 sequences sequence NNS cord-284409-xiyeceib 76 7 from from IN cord-284409-xiyeceib 76 8 the the DT cord-284409-xiyeceib 76 9 IgM IgM NNP cord-284409-xiyeceib 76 10 repertoires repertoire NNS cord-284409-xiyeceib 76 11 revealed reveal VBD cord-284409-xiyeceib 76 12 a a DT cord-284409-xiyeceib 76 13 CDRH3 cdrh3 NN cord-284409-xiyeceib 76 14 with with IN cord-284409-xiyeceib 76 15 a a DT cord-284409-xiyeceib 76 16 length length NN cord-284409-xiyeceib 76 17 ( ( -LRB- cord-284409-xiyeceib 76 18 20 20 CD cord-284409-xiyeceib 76 19 amino amino JJ cord-284409-xiyeceib 76 20 acids acid NNS cord-284409-xiyeceib 76 21 ) ) -RRB- cord-284409-xiyeceib 76 22 and and CC cord-284409-xiyeceib 76 23 sequence sequence VB cord-284409-xiyeceib 76 24 similar similar JJ cord-284409-xiyeceib 76 25 ( ( -LRB- cord-284409-xiyeceib 76 26 50 50 CD cord-284409-xiyeceib 76 27 % % NN cord-284409-xiyeceib 76 28 ) ) -RRB- cord-284409-xiyeceib 76 29 to to IN cord-284409-xiyeceib 76 30 that that DT cord-284409-xiyeceib 76 31 of of IN cord-284409-xiyeceib 76 32 the the DT cord-284409-xiyeceib 76 33 b12 b12 NN cord-284409-xiyeceib 76 34 CDRH3 cdrh3 NN cord-284409-xiyeceib 76 35 , , , cord-284409-xiyeceib 76 36 but but CC cord-284409-xiyeceib 76 37 the the DT cord-284409-xiyeceib 76 38 V v NN cord-284409-xiyeceib 76 39 gene gene NN cord-284409-xiyeceib 76 40 associated associate VBN cord-284409-xiyeceib 76 41 with with IN cord-284409-xiyeceib 76 42 that that DT cord-284409-xiyeceib 76 43 CDRH3 cdrh3 NN cord-284409-xiyeceib 76 44 was be VBD cord-284409-xiyeceib 76 45 found find VBN cord-284409-xiyeceib 76 46 to to TO cord-284409-xiyeceib 76 47 be be VB cord-284409-xiyeceib 76 48 HV4-b HV4-b NNP cord-284409-xiyeceib 76 49 ( ( -LRB- cord-284409-xiyeceib 76 50 15 15 CD cord-284409-xiyeceib 76 51 ) ) -RRB- cord-284409-xiyeceib 76 52 . . . cord-284409-xiyeceib 77 1 This this DT cord-284409-xiyeceib 77 2 finding finding NN cord-284409-xiyeceib 77 3 indicates indicate VBZ cord-284409-xiyeceib 77 4 that that IN cord-284409-xiyeceib 77 5 long long JJ cord-284409-xiyeceib 77 6 CDRH3s cdrh3s NN cord-284409-xiyeceib 77 7 may may MD cord-284409-xiyeceib 77 8 not not RB cord-284409-xiyeceib 77 9 be be VB cord-284409-xiyeceib 77 10 a a DT cord-284409-xiyeceib 77 11 limiting limit VBG cord-284409-xiyeceib 77 12 factor factor NN cord-284409-xiyeceib 77 13 for for IN cord-284409-xiyeceib 77 14 the the DT cord-284409-xiyeceib 77 15 development development NN cord-284409-xiyeceib 77 16 of of IN cord-284409-xiyeceib 77 17 bnAbs bnAbs NNP cord-284409-xiyeceib 77 18 ( ( -LRB- cord-284409-xiyeceib 77 19 25 25 CD cord-284409-xiyeceib 77 20 ) ) -RRB- cord-284409-xiyeceib 77 21 although although IN cord-284409-xiyeceib 77 22 long long JJ cord-284409-xiyeceib 77 23 CDRH3 cdrh3 NN cord-284409-xiyeceib 77 24 motifs motif NNS cord-284409-xiyeceib 77 25 with with IN cord-284409-xiyeceib 77 26 certain certain JJ cord-284409-xiyeceib 77 27 amino amino NN cord-284409-xiyeceib 77 28 acid acid NN cord-284409-xiyeceib 77 29 preferences preference NNS cord-284409-xiyeceib 77 30 and/or and/or CC cord-284409-xiyeceib 77 31 associations association NNS cord-284409-xiyeceib 77 32 with with IN cord-284409-xiyeceib 77 33 particular particular JJ cord-284409-xiyeceib 77 34 heavy heavy JJ cord-284409-xiyeceib 77 35 or or CC cord-284409-xiyeceib 77 36 light light JJ cord-284409-xiyeceib 77 37 chain chain NN cord-284409-xiyeceib 77 38 families family NNS cord-284409-xiyeceib 77 39 favoring favor VBG cord-284409-xiyeceib 77 40 polyreactivity polyreactivity NN cord-284409-xiyeceib 77 41 may may MD cord-284409-xiyeceib 77 42 not not RB cord-284409-xiyeceib 77 43 be be VB cord-284409-xiyeceib 77 44 undermined undermine VBN cord-284409-xiyeceib 77 45 . . . cord-284409-xiyeceib 78 1 Stamatatos stamatatos NN cord-284409-xiyeceib 78 2 and and CC cord-284409-xiyeceib 78 3 coworkers coworker NNS cord-284409-xiyeceib 78 4 have have VBP cord-284409-xiyeceib 78 5 conducted conduct VBN cord-284409-xiyeceib 78 6 experiments experiment NNS cord-284409-xiyeceib 78 7 screening screen VBG cord-284409-xiyeceib 78 8 a a DT cord-284409-xiyeceib 78 9 large large JJ cord-284409-xiyeceib 78 10 panel panel NN cord-284409-xiyeceib 78 11 of of IN cord-284409-xiyeceib 78 12 recombinant recombinant JJ cord-284409-xiyeceib 78 13 Envs Envs NNP cord-284409-xiyeceib 78 14 for for IN cord-284409-xiyeceib 78 15 binding bind VBG cord-284409-xiyeceib 78 16 to to IN cord-284409-xiyeceib 78 17 the the DT cord-284409-xiyeceib 78 18 germline germline JJ cord-284409-xiyeceib 78 19 predecessors predecessor NNS cord-284409-xiyeceib 78 20 of of IN cord-284409-xiyeceib 78 21 b12 b12 NN cord-284409-xiyeceib 78 22 , , , cord-284409-xiyeceib 78 23 NIH45 NIH45 NNP cord-284409-xiyeceib 78 24 - - HYPH cord-284409-xiyeceib 78 25 46 46 CD cord-284409-xiyeceib 78 26 , , , cord-284409-xiyeceib 78 27 and and CC cord-284409-xiyeceib 78 28 3BNC60 3bnc60 CD cord-284409-xiyeceib 78 29 to to TO cord-284409-xiyeceib 78 30 test test VB cord-284409-xiyeceib 78 31 how how WRB cord-284409-xiyeceib 78 32 Env Env NNP cord-284409-xiyeceib 78 33 immunogens immunogen NNS cord-284409-xiyeceib 78 34 interact interact VBP cord-284409-xiyeceib 78 35 with with IN cord-284409-xiyeceib 78 36 the the DT cord-284409-xiyeceib 78 37 predicted predict VBN cord-284409-xiyeceib 78 38 germline germline JJ cord-284409-xiyeceib 78 39 versions version NNS cord-284409-xiyeceib 78 40 of of IN cord-284409-xiyeceib 78 41 known know VBN cord-284409-xiyeceib 78 42 bnAbs bnabs NN cord-284409-xiyeceib 78 43 ( ( -LRB- cord-284409-xiyeceib 78 44 26 26 CD cord-284409-xiyeceib 78 45 ) ) -RRB- cord-284409-xiyeceib 78 46 . . . cord-284409-xiyeceib 79 1 They -PRON- PRP cord-284409-xiyeceib 79 2 found find VBD cord-284409-xiyeceib 79 3 that that IN cord-284409-xiyeceib 79 4 the the DT cord-284409-xiyeceib 79 5 mature mature JJ cord-284409-xiyeceib 79 6 bnAbs bnAbs NNP cord-284409-xiyeceib 79 7 reacted react VBD cord-284409-xiyeceib 79 8 with with IN cord-284409-xiyeceib 79 9 diverse diverse JJ cord-284409-xiyeceib 79 10 Envs Envs NNP cord-284409-xiyeceib 79 11 but but CC cord-284409-xiyeceib 79 12 the the DT cord-284409-xiyeceib 79 13 corresponding corresponding JJ cord-284409-xiyeceib 79 14 germline germline NN cord-284409-xiyeceib 79 15 antibodies antibody NNS cord-284409-xiyeceib 79 16 did do VBD cord-284409-xiyeceib 79 17 not not RB cord-284409-xiyeceib 79 18 . . . cord-284409-xiyeceib 80 1 They -PRON- PRP cord-284409-xiyeceib 80 2 examined examine VBD cord-284409-xiyeceib 80 3 in in IN cord-284409-xiyeceib 80 4 detail detail NN cord-284409-xiyeceib 80 5 the the DT cord-284409-xiyeceib 80 6 germline germline JJ cord-284409-xiyeceib 80 7 b12 b12 NN cord-284409-xiyeceib 80 8 and and CC cord-284409-xiyeceib 80 9 its -PRON- PRP$ cord-284409-xiyeceib 80 10 chimeric chimeric JJ cord-284409-xiyeceib 80 11 forms form NNS cord-284409-xiyeceib 80 12 -either -either WDT cord-284409-xiyeceib 80 13 the the DT cord-284409-xiyeceib 80 14 germline germline JJ cord-284409-xiyeceib 80 15 heavy heavy JJ cord-284409-xiyeceib 80 16 chain chain NN cord-284409-xiyeceib 80 17 paired pair VBN cord-284409-xiyeceib 80 18 with with IN cord-284409-xiyeceib 80 19 the the DT cord-284409-xiyeceib 80 20 mature mature JJ cord-284409-xiyeceib 80 21 light light JJ cord-284409-xiyeceib 80 22 chain chain NN cord-284409-xiyeceib 80 23 and and CC cord-284409-xiyeceib 80 24 vice vice NN cord-284409-xiyeceib 80 25 versa versa RB cord-284409-xiyeceib 80 26 -to -to : cord-284409-xiyeceib 80 27 test test NN cord-284409-xiyeceib 80 28 whether whether IN cord-284409-xiyeceib 80 29 they -PRON- PRP cord-284409-xiyeceib 80 30 could could MD cord-284409-xiyeceib 80 31 interact interact VB cord-284409-xiyeceib 80 32 with with IN cord-284409-xiyeceib 80 33 any any DT cord-284409-xiyeceib 80 34 of of IN cord-284409-xiyeceib 80 35 the the DT cord-284409-xiyeceib 80 36 recombinant recombinant JJ cord-284409-xiyeceib 80 37 Envs Envs NNP cord-284409-xiyeceib 80 38 derived derive VBN cord-284409-xiyeceib 80 39 from from IN cord-284409-xiyeceib 80 40 clade clade NN cord-284409-xiyeceib 80 41 A a NN cord-284409-xiyeceib 80 42 , , , cord-284409-xiyeceib 80 43 B b NN cord-284409-xiyeceib 80 44 , , , cord-284409-xiyeceib 80 45 and and CC cord-284409-xiyeceib 80 46 C c NN cord-284409-xiyeceib 80 47 viruses virus NNS cord-284409-xiyeceib 80 48 . . . cord-284409-xiyeceib 81 1 Among among IN cord-284409-xiyeceib 81 2 all all PDT cord-284409-xiyeceib 81 3 the the DT cord-284409-xiyeceib 81 4 recombinant recombinant JJ cord-284409-xiyeceib 81 5 Envs Envs NNP cord-284409-xiyeceib 81 6 tested test VBD cord-284409-xiyeceib 81 7 , , , cord-284409-xiyeceib 81 8 at at RB cord-284409-xiyeceib 81 9 least least RBS cord-284409-xiyeceib 81 10 one one CD cord-284409-xiyeceib 81 11 Env Env NNP cord-284409-xiyeceib 81 12 ( ( -LRB- cord-284409-xiyeceib 81 13 QH0692 qh0692 NN cord-284409-xiyeceib 81 14 ) ) -RRB- cord-284409-xiyeceib 81 15 was be VBD cord-284409-xiyeceib 81 16 found find VBN cord-284409-xiyeceib 81 17 to to TO cord-284409-xiyeceib 81 18 bind bind VB cord-284409-xiyeceib 81 19 a a DT cord-284409-xiyeceib 81 20 b12 b12 NN cord-284409-xiyeceib 81 21 chimera chimera NN cord-284409-xiyeceib 81 22 with with IN cord-284409-xiyeceib 81 23 a a DT cord-284409-xiyeceib 81 24 mature mature JJ cord-284409-xiyeceib 81 25 heavy heavy JJ cord-284409-xiyeceib 81 26 chain chain NN cord-284409-xiyeceib 81 27 . . . cord-284409-xiyeceib 82 1 However however RB cord-284409-xiyeceib 82 2 , , , cord-284409-xiyeceib 82 3 this this DT cord-284409-xiyeceib 82 4 chimera chimera NN cord-284409-xiyeceib 82 5 failed fail VBD cord-284409-xiyeceib 82 6 to to TO cord-284409-xiyeceib 82 7 mediate mediate VB cord-284409-xiyeceib 82 8 calcium calcium NN cord-284409-xiyeceib 82 9 mobilization mobilization NN cord-284409-xiyeceib 82 10 , , , cord-284409-xiyeceib 82 11 indicating indicate VBG cord-284409-xiyeceib 82 12 no no DT cord-284409-xiyeceib 82 13 BCR BCR NNP cord-284409-xiyeceib 82 14 activation activation NN cord-284409-xiyeceib 82 15 via via IN cord-284409-xiyeceib 82 16 BCR BCR NNP cord-284409-xiyeceib 82 17 - - HYPH cord-284409-xiyeceib 82 18 antigen antigen NN cord-284409-xiyeceib 82 19 engagement engagement NN cord-284409-xiyeceib 82 20 . . . cord-284409-xiyeceib 83 1 In in IN cord-284409-xiyeceib 83 2 other other JJ cord-284409-xiyeceib 83 3 studies study NNS cord-284409-xiyeceib 83 4 , , , cord-284409-xiyeceib 83 5 they -PRON- PRP cord-284409-xiyeceib 83 6 found find VBD cord-284409-xiyeceib 83 7 that that IN cord-284409-xiyeceib 83 8 the the DT cord-284409-xiyeceib 83 9 elimination elimination NN cord-284409-xiyeceib 83 10 of of IN cord-284409-xiyeceib 83 11 certain certain JJ cord-284409-xiyeceib 83 12 conserved conserved JJ cord-284409-xiyeceib 83 13 glycosylation glycosylation NN cord-284409-xiyeceib 83 14 sites site NNS cord-284409-xiyeceib 83 15 on on IN cord-284409-xiyeceib 83 16 Envs Envs NNP cord-284409-xiyeceib 83 17 led lead VBD cord-284409-xiyeceib 83 18 to to IN cord-284409-xiyeceib 83 19 the the DT cord-284409-xiyeceib 83 20 binding binding NN cord-284409-xiyeceib 83 21 of of IN cord-284409-xiyeceib 83 22 germline germline JJ cord-284409-xiyeceib 83 23 versions version NNS cord-284409-xiyeceib 83 24 of of IN cord-284409-xiyeceib 83 25 VRC01 VRC01 NNP cord-284409-xiyeceib 83 26 and and CC cord-284409-xiyeceib 83 27 NIH45 NIH45 NNP cord-284409-xiyeceib 83 28 - - HYPH cord-284409-xiyeceib 83 29 46 46 CD cord-284409-xiyeceib 83 30 and and CC cord-284409-xiyeceib 83 31 BCR BCR NNP cord-284409-xiyeceib 83 32 activation activation NN cord-284409-xiyeceib 83 33 ( ( -LRB- cord-284409-xiyeceib 83 34 27 27 CD cord-284409-xiyeceib 83 35 ) ) -RRB- cord-284409-xiyeceib 83 36 but but CC cord-284409-xiyeceib 83 37 that that IN cord-284409-xiyeceib 83 38 the the DT cord-284409-xiyeceib 83 39 modified modify VBN cord-284409-xiyeceib 83 40 Envs Envs NNP cord-284409-xiyeceib 83 41 did do VBD cord-284409-xiyeceib 83 42 not not RB cord-284409-xiyeceib 83 43 interact interact VB cord-284409-xiyeceib 83 44 with with IN cord-284409-xiyeceib 83 45 PG9 PG9 NNP cord-284409-xiyeceib 83 46 and and CC cord-284409-xiyeceib 83 47 447 447 CD cord-284409-xiyeceib 83 48 - - HYPH cord-284409-xiyeceib 83 49 52D 52d CD cord-284409-xiyeceib 83 50 germlines germline NNS cord-284409-xiyeceib 83 51 ( ( -LRB- cord-284409-xiyeceib 83 52 28 28 CD cord-284409-xiyeceib 83 53 ) ) -RRB- cord-284409-xiyeceib 83 54 . . . cord-284409-xiyeceib 84 1 Haynes Haynes NNP cord-284409-xiyeceib 84 2 and and CC cord-284409-xiyeceib 84 3 coworkers coworker NNS cord-284409-xiyeceib 84 4 have have VBP cord-284409-xiyeceib 84 5 succeeded succeed VBN cord-284409-xiyeceib 84 6 in in IN cord-284409-xiyeceib 84 7 finding find VBG cord-284409-xiyeceib 84 8 Envs Envs NNP cord-284409-xiyeceib 84 9 capable capable JJ cord-284409-xiyeceib 84 10 of of IN cord-284409-xiyeceib 84 11 engaging engage VBG cord-284409-xiyeceib 84 12 the the DT cord-284409-xiyeceib 84 13 germline germline JJ cord-284409-xiyeceib 84 14 versions version NNS cord-284409-xiyeceib 84 15 of of IN cord-284409-xiyeceib 84 16 a a DT cord-284409-xiyeceib 84 17 CD4bs cd4bs NN cord-284409-xiyeceib 84 18 bnAb bnAb '' cord-284409-xiyeceib 84 19 , , , cord-284409-xiyeceib 84 20 CH103 CH103 NNP cord-284409-xiyeceib 84 21 , , , cord-284409-xiyeceib 84 22 while while IN cord-284409-xiyeceib 84 23 studying study VBG cord-284409-xiyeceib 84 24 the the DT cord-284409-xiyeceib 84 25 co co NN cord-284409-xiyeceib 84 26 - - NN cord-284409-xiyeceib 84 27 evolution evolution NN cord-284409-xiyeceib 84 28 of of IN cord-284409-xiyeceib 84 29 the the DT cord-284409-xiyeceib 84 30 antibody antibody NN cord-284409-xiyeceib 84 31 in in IN cord-284409-xiyeceib 84 32 an an DT cord-284409-xiyeceib 84 33 HIV-1 HIV-1 NNP cord-284409-xiyeceib 84 34 infected infect VBN cord-284409-xiyeceib 84 35 patient patient NN cord-284409-xiyeceib 84 36 ( ( -LRB- cord-284409-xiyeceib 84 37 29 29 CD cord-284409-xiyeceib 84 38 ) ) -RRB- cord-284409-xiyeceib 84 39 . . . cord-284409-xiyeceib 85 1 They -PRON- PRP cord-284409-xiyeceib 85 2 found find VBD cord-284409-xiyeceib 85 3 that that IN cord-284409-xiyeceib 85 4 CH103 CH103 NNP cord-284409-xiyeceib 85 5 is be VBZ cord-284409-xiyeceib 85 6 less less RBR cord-284409-xiyeceib 85 7 mutated mutated JJ cord-284409-xiyeceib 85 8 than than IN cord-284409-xiyeceib 85 9 most most JJS cord-284409-xiyeceib 85 10 other other JJ cord-284409-xiyeceib 85 11 CD4bs CD4bs NNP cord-284409-xiyeceib 85 12 bnAbs bnAbs NNP cord-284409-xiyeceib 85 13 , , , cord-284409-xiyeceib 85 14 and and CC cord-284409-xiyeceib 85 15 importantly importantly RB cord-284409-xiyeceib 85 16 that that IN cord-284409-xiyeceib 85 17 the the DT cord-284409-xiyeceib 85 18 unmutated unmutated JJ cord-284409-xiyeceib 85 19 common common JJ cord-284409-xiyeceib 85 20 ancestor ancestor NN cord-284409-xiyeceib 85 21 of of IN cord-284409-xiyeceib 85 22 the the DT cord-284409-xiyeceib 85 23 CH103 CH103 NNP cord-284409-xiyeceib 85 24 lineage lineage NN cord-284409-xiyeceib 85 25 avidly avidly RB cord-284409-xiyeceib 85 26 bound bind VBD cord-284409-xiyeceib 85 27 the the DT cord-284409-xiyeceib 85 28 transmitted transmit VBN cord-284409-xiyeceib 85 29 / / SYM cord-284409-xiyeceib 85 30 founder founder NN cord-284409-xiyeceib 85 31 HIV-1 HIV-1 NNP cord-284409-xiyeceib 85 32 Envs Envs NNP cord-284409-xiyeceib 85 33 . . . cord-284409-xiyeceib 86 1 This this DT cord-284409-xiyeceib 86 2 finding finding NN cord-284409-xiyeceib 86 3 suggests suggest VBZ cord-284409-xiyeceib 86 4 that that IN cord-284409-xiyeceib 86 5 early early JJ cord-284409-xiyeceib 86 6 founder founder NN cord-284409-xiyeceib 86 7 Envs Envs NNP cord-284409-xiyeceib 86 8 could could MD cord-284409-xiyeceib 86 9 bind bind VB cord-284409-xiyeceib 86 10 optimally optimally RB cord-284409-xiyeceib 86 11 to to IN cord-284409-xiyeceib 86 12 the the DT cord-284409-xiyeceib 86 13 germline germline NN cord-284409-xiyeceib 86 14 and and CC cord-284409-xiyeceib 86 15 intermediate intermediate JJ cord-284409-xiyeceib 86 16 versions version NNS cord-284409-xiyeceib 86 17 of of IN cord-284409-xiyeceib 86 18 CH103 CH103 NNP cord-284409-xiyeceib 86 19 , , , cord-284409-xiyeceib 86 20 and and CC cord-284409-xiyeceib 86 21 therefore therefore RB cord-284409-xiyeceib 86 22 , , , cord-284409-xiyeceib 86 23 are be VBP cord-284409-xiyeceib 86 24 promising promising JJ cord-284409-xiyeceib 86 25 vaccine vaccine NN cord-284409-xiyeceib 86 26 immunogens immunogen NNS cord-284409-xiyeceib 86 27 , , , cord-284409-xiyeceib 86 28 representing represent VBG cord-284409-xiyeceib 86 29 an an DT cord-284409-xiyeceib 86 30 important important JJ cord-284409-xiyeceib 86 31 step step NN cord-284409-xiyeceib 86 32 forward forward RB cord-284409-xiyeceib 86 33 in in IN cord-284409-xiyeceib 86 34 HIV-1 HIV-1 NNP cord-284409-xiyeceib 86 35 vaccine vaccine NN cord-284409-xiyeceib 86 36 development development NN cord-284409-xiyeceib 86 37 . . . cord-284409-xiyeceib 87 1 Similarly similarly RB cord-284409-xiyeceib 87 2 , , , cord-284409-xiyeceib 87 3 the the DT cord-284409-xiyeceib 87 4 maturation maturation NN cord-284409-xiyeceib 87 5 pathway pathway NN cord-284409-xiyeceib 87 6 of of IN cord-284409-xiyeceib 87 7 the the DT cord-284409-xiyeceib 87 8 potent potent JJ cord-284409-xiyeceib 87 9 V1V2-directed v1v2-directe VBN cord-284409-xiyeceib 87 10 HIV HIV NNP cord-284409-xiyeceib 87 11 - - HYPH cord-284409-xiyeceib 87 12 neutralizing neutralize VBG cord-284409-xiyeceib 87 13 antibody antibody NN cord-284409-xiyeceib 87 14 , , , cord-284409-xiyeceib 87 15 CAP256-VRC26 CAP256-VRC26 NNP cord-284409-xiyeceib 87 16 , , , cord-284409-xiyeceib 87 17 has have VBZ cord-284409-xiyeceib 87 18 been be VBN cord-284409-xiyeceib 87 19 described describe VBN cord-284409-xiyeceib 87 20 , , , cord-284409-xiyeceib 87 21 in in IN cord-284409-xiyeceib 87 22 which which WDT cord-284409-xiyeceib 87 23 a a DT cord-284409-xiyeceib 87 24 germline germline NN cord-284409-xiyeceib 87 25 - - HYPH cord-284409-xiyeceib 87 26 like like JJ cord-284409-xiyeceib 87 27 intermediate intermediate JJ cord-284409-xiyeceib 87 28 with with IN cord-284409-xiyeceib 87 29 a a DT cord-284409-xiyeceib 87 30 35-amino 35-amino CD cord-284409-xiyeceib 87 31 acid acid NN cord-284409-xiyeceib 87 32 residue residue NN cord-284409-xiyeceib 87 33 long long JJ cord-284409-xiyeceib 87 34 CDRH3 cdrh3 NN cord-284409-xiyeceib 87 35 was be VBD cord-284409-xiyeceib 87 36 shown show VBN cord-284409-xiyeceib 87 37 to to TO cord-284409-xiyeceib 87 38 bind bind VB cord-284409-xiyeceib 87 39 and and CC cord-284409-xiyeceib 87 40 neutralize neutralize VB cord-284409-xiyeceib 87 41 the the DT cord-284409-xiyeceib 87 42 superinfecting superinfecting NN cord-284409-xiyeceib 87 43 virus virus NN cord-284409-xiyeceib 87 44 weakly weakly RB cord-284409-xiyeceib 87 45 , , , cord-284409-xiyeceib 87 46 but but CC cord-284409-xiyeceib 87 47 did do VBD cord-284409-xiyeceib 87 48 not not RB cord-284409-xiyeceib 87 49 bind bind VB cord-284409-xiyeceib 87 50 or or CC cord-284409-xiyeceib 87 51 neutralize neutralize VB cord-284409-xiyeceib 87 52 heterologous heterologous JJ cord-284409-xiyeceib 87 53 viruses virus NNS cord-284409-xiyeceib 87 54 ( ( -LRB- cord-284409-xiyeceib 87 55 30 30 CD cord-284409-xiyeceib 87 56 ) ) -RRB- cord-284409-xiyeceib 87 57 . . . cord-284409-xiyeceib 88 1 These these DT cord-284409-xiyeceib 88 2 results result NNS cord-284409-xiyeceib 88 3 suggest suggest VBP cord-284409-xiyeceib 88 4 that that IN cord-284409-xiyeceib 88 5 the the DT cord-284409-xiyeceib 88 6 CAP256-VRC26 CAP256-VRC26 NNP cord-284409-xiyeceib 88 7 lineage lineage NN cord-284409-xiyeceib 88 8 could could MD cord-284409-xiyeceib 88 9 be be VB cord-284409-xiyeceib 88 10 initiated initiate VBN cord-284409-xiyeceib 88 11 by by IN cord-284409-xiyeceib 88 12 using use VBG cord-284409-xiyeceib 88 13 a a DT cord-284409-xiyeceib 88 14 rare rare JJ cord-284409-xiyeceib 88 15 superinfecting superinfecting NN cord-284409-xiyeceib 88 16 - - HYPH cord-284409-xiyeceib 88 17 virus virus NN cord-284409-xiyeceib 88 18 - - HYPH cord-284409-xiyeceib 88 19 like like JJ cord-284409-xiyeceib 88 20 V1V2 V1V2 NNP cord-284409-xiyeceib 88 21 Env Env NNP cord-284409-xiyeceib 88 22 . . . cord-284409-xiyeceib 89 1 In in IN cord-284409-xiyeceib 89 2 another another DT cord-284409-xiyeceib 89 3 successful successful JJ cord-284409-xiyeceib 89 4 effort effort NN cord-284409-xiyeceib 89 5 in in IN cord-284409-xiyeceib 89 6 identifying identify VBG cord-284409-xiyeceib 89 7 an an DT cord-284409-xiyeceib 89 8 Env Env NNP cord-284409-xiyeceib 89 9 that that WDT cord-284409-xiyeceib 89 10 could could MD cord-284409-xiyeceib 89 11 engage engage VB cord-284409-xiyeceib 89 12 the the DT cord-284409-xiyeceib 89 13 germline germline JJ cord-284409-xiyeceib 89 14 versions version NNS cord-284409-xiyeceib 89 15 of of IN cord-284409-xiyeceib 89 16 bnAbs bnabs NN cord-284409-xiyeceib 89 17 , , , cord-284409-xiyeceib 89 18 Scheif Scheif NNP cord-284409-xiyeceib 89 19 and and CC cord-284409-xiyeceib 89 20 coworkers coworker NNS cord-284409-xiyeceib 89 21 devised devise VBD cord-284409-xiyeceib 89 22 a a DT cord-284409-xiyeceib 89 23 computation computation NN cord-284409-xiyeceib 89 24 - - HYPH cord-284409-xiyeceib 89 25 guided guide VBN cord-284409-xiyeceib 89 26 approach approach NN cord-284409-xiyeceib 89 27 combined combine VBN cord-284409-xiyeceib 89 28 with with IN cord-284409-xiyeceib 89 29 in in FW cord-284409-xiyeceib 89 30 vitro vitro FW cord-284409-xiyeceib 89 31 screening screen VBG cord-284409-xiyeceib 89 32 to to TO cord-284409-xiyeceib 89 33 engineer engineer VB cord-284409-xiyeceib 89 34 a a DT cord-284409-xiyeceib 89 35 gp120 gp120 CD cord-284409-xiyeceib 89 36 outer outer JJ cord-284409-xiyeceib 89 37 domain domain NN cord-284409-xiyeceib 89 38 . . . cord-284409-xiyeceib 90 1 The the DT cord-284409-xiyeceib 90 2 designed design VBN cord-284409-xiyeceib 90 3 protein protein NN cord-284409-xiyeceib 90 4 not not RB cord-284409-xiyeceib 90 5 only only RB cord-284409-xiyeceib 90 6 bound bind VBN cord-284409-xiyeceib 90 7 to to IN cord-284409-xiyeceib 90 8 multiple multiple JJ cord-284409-xiyeceib 90 9 VRC01-class VRC01-class NNP cord-284409-xiyeceib 90 10 bnAbs bnabs NN cord-284409-xiyeceib 90 11 and and CC cord-284409-xiyeceib 90 12 their -PRON- PRP$ cord-284409-xiyeceib 90 13 germline germline JJ cord-284409-xiyeceib 90 14 precursors precursor NNS cord-284409-xiyeceib 90 15 but but CC cord-284409-xiyeceib 90 16 also also RB cord-284409-xiyeceib 90 17 activated activate VBN cord-284409-xiyeceib 90 18 B b NN cord-284409-xiyeceib 90 19 cells cell NNS cord-284409-xiyeceib 90 20 expressing express VBG cord-284409-xiyeceib 90 21 diverse diverse JJ cord-284409-xiyeceib 90 22 intermediates intermediate NNS cord-284409-xiyeceib 90 23 of of IN cord-284409-xiyeceib 90 24 the the DT cord-284409-xiyeceib 90 25 bnAbs bnabs NN cord-284409-xiyeceib 90 26 ( ( -LRB- cord-284409-xiyeceib 90 27 31 31 CD cord-284409-xiyeceib 90 28 ) ) -RRB- cord-284409-xiyeceib 90 29 . . . cord-284409-xiyeceib 91 1 Therefore therefore RB cord-284409-xiyeceib 91 2 , , , cord-284409-xiyeceib 91 3 priming prime VBG cord-284409-xiyeceib 91 4 with with IN cord-284409-xiyeceib 91 5 the the DT cord-284409-xiyeceib 91 6 protein protein NN cord-284409-xiyeceib 91 7 and and CC cord-284409-xiyeceib 91 8 subsequent subsequent JJ cord-284409-xiyeceib 91 9 boosting boosting NN cord-284409-xiyeceib 91 10 with with IN cord-284409-xiyeceib 91 11 more more JJR cord-284409-xiyeceib 91 12 native native JJ cord-284409-xiyeceib 91 13 immunogens immunogen NNS cord-284409-xiyeceib 91 14 could could MD cord-284409-xiyeceib 91 15 help help VB cord-284409-xiyeceib 91 16 induce induce VB cord-284409-xiyeceib 91 17 early early JJ cord-284409-xiyeceib 91 18 somatic somatic JJ cord-284409-xiyeceib 91 19 mutations mutation NNS cord-284409-xiyeceib 91 20 and and CC cord-284409-xiyeceib 91 21 the the DT cord-284409-xiyeceib 91 22 ultimate ultimate JJ cord-284409-xiyeceib 91 23 elicitation elicitation NN cord-284409-xiyeceib 91 24 of of IN cord-284409-xiyeceib 91 25 VRC01-class VRC01-class NNP cord-284409-xiyeceib 91 26 bnAbs bnAbs NNP cord-284409-xiyeceib 91 27 . . . cord-284409-xiyeceib 92 1 Interestingly interestingly RB cord-284409-xiyeceib 92 2 , , , cord-284409-xiyeceib 92 3 Nussenzweig Nussenzweig NNP cord-284409-xiyeceib 92 4 and and CC cord-284409-xiyeceib 92 5 coworkers coworker NNS cord-284409-xiyeceib 92 6 ' ' POS cord-284409-xiyeceib 92 7 study study NN cord-284409-xiyeceib 92 8 showed show VBD cord-284409-xiyeceib 92 9 that that IN cord-284409-xiyeceib 92 10 somatic somatic JJ cord-284409-xiyeceib 92 11 mutations mutation NNS cord-284409-xiyeceib 92 12 of of IN cord-284409-xiyeceib 92 13 the the DT cord-284409-xiyeceib 92 14 FRs FRs NNP cord-284409-xiyeceib 92 15 and and CC cord-284409-xiyeceib 92 16 insertions insertion NNS cord-284409-xiyeceib 92 17 of of IN cord-284409-xiyeceib 92 18 some some DT cord-284409-xiyeceib 92 19 bnAbs bnabs NN cord-284409-xiyeceib 92 20 are be VBP cord-284409-xiyeceib 92 21 required require VBN cord-284409-xiyeceib 92 22 for for IN cord-284409-xiyeceib 92 23 their -PRON- PRP$ cord-284409-xiyeceib 92 24 broad broad JJ cord-284409-xiyeceib 92 25 and and CC cord-284409-xiyeceib 92 26 potent potent JJ cord-284409-xiyeceib 92 27 HIV-1 HIV-1 NNP cord-284409-xiyeceib 92 28 neutralizing neutralize VBG cord-284409-xiyeceib 92 29 activity activity NN cord-284409-xiyeceib 92 30 ( ( -LRB- cord-284409-xiyeceib 92 31 32 32 CD cord-284409-xiyeceib 92 32 ) ) -RRB- cord-284409-xiyeceib 92 33 . . . cord-284409-xiyeceib 93 1 Based base VBN cord-284409-xiyeceib 93 2 on on IN cord-284409-xiyeceib 93 3 structural structural JJ cord-284409-xiyeceib 93 4 information information NN cord-284409-xiyeceib 93 5 , , , cord-284409-xiyeceib 93 6 they -PRON- PRP cord-284409-xiyeceib 93 7 made make VBD cord-284409-xiyeceib 93 8 different different JJ cord-284409-xiyeceib 93 9 germline germline JJ cord-284409-xiyeceib 93 10 versions version NNS cord-284409-xiyeceib 93 11 of of IN cord-284409-xiyeceib 93 12 VRC01 VRC01 NNP cord-284409-xiyeceib 93 13 , , , cord-284409-xiyeceib 93 14 NIH45 NIH45 NNP cord-284409-xiyeceib 93 15 - - HYPH cord-284409-xiyeceib 93 16 46 46 CD cord-284409-xiyeceib 93 17 , , , cord-284409-xiyeceib 93 18 12A21 12a21 CD cord-284409-xiyeceib 93 19 , , , cord-284409-xiyeceib 93 20 and and CC cord-284409-xiyeceib 93 21 3BNC117 3BNC117 NNP cord-284409-xiyeceib 93 22 , , , cord-284409-xiyeceib 93 23 and and CC cord-284409-xiyeceib 93 24 found find VBD cord-284409-xiyeceib 93 25 that that IN cord-284409-xiyeceib 93 26 mutations mutation NNS cord-284409-xiyeceib 93 27 in in IN cord-284409-xiyeceib 93 28 FRs fr NNS cord-284409-xiyeceib 93 29 were be VBD cord-284409-xiyeceib 93 30 also also RB cord-284409-xiyeceib 93 31 essential essential JJ cord-284409-xiyeceib 93 32 for for IN cord-284409-xiyeceib 93 33 binding bind VBG cord-284409-xiyeceib 93 34 , , , cord-284409-xiyeceib 93 35 breadth breadth NN cord-284409-xiyeceib 93 36 , , , cord-284409-xiyeceib 93 37 and and CC cord-284409-xiyeceib 93 38 potency potency NN cord-284409-xiyeceib 93 39 of of IN cord-284409-xiyeceib 93 40 most most JJS cord-284409-xiyeceib 93 41 bnAbs bnabs NN cord-284409-xiyeceib 93 42 . . . cord-284409-xiyeceib 94 1 This this DT cord-284409-xiyeceib 94 2 suggested suggest VBD cord-284409-xiyeceib 94 3 that that IN cord-284409-xiyeceib 94 4 certain certain JJ cord-284409-xiyeceib 94 5 framework framework NN cord-284409-xiyeceib 94 6 mutations mutation NNS cord-284409-xiyeceib 94 7 could could MD cord-284409-xiyeceib 94 8 be be VB cord-284409-xiyeceib 94 9 critical critical JJ cord-284409-xiyeceib 94 10 and and CC cord-284409-xiyeceib 94 11 should should MD cord-284409-xiyeceib 94 12 be be VB cord-284409-xiyeceib 94 13 preserved preserve VBN cord-284409-xiyeceib 94 14 for for IN cord-284409-xiyeceib 94 15 designing design VBG cord-284409-xiyeceib 94 16 the the DT cord-284409-xiyeceib 94 17 intermediates intermediate NNS cord-284409-xiyeceib 94 18 of of IN cord-284409-xiyeceib 94 19 such such JJ cord-284409-xiyeceib 94 20 bnAbs bnabs NN cord-284409-xiyeceib 94 21 . . . cord-284409-xiyeceib 95 1 Several several JJ cord-284409-xiyeceib 95 2 other other JJ cord-284409-xiyeceib 95 3 studies study NNS cord-284409-xiyeceib 95 4 mining mine VBG cord-284409-xiyeceib 95 5 the the DT cord-284409-xiyeceib 95 6 HIV-1 HIV-1 NNP cord-284409-xiyeceib 95 7 infected infect VBD cord-284409-xiyeceib 95 8 donors donor NNS cord-284409-xiyeceib 95 9 ' ' POS cord-284409-xiyeceib 95 10 antibodyomes antibodyome NNS cord-284409-xiyeceib 95 11 ( ( -LRB- cord-284409-xiyeceib 95 12 33 33 CD cord-284409-xiyeceib 95 13 - - SYM cord-284409-xiyeceib 95 14 35 35 CD cord-284409-xiyeceib 95 15 ) ) -RRB- cord-284409-xiyeceib 95 16 revealed reveal VBD cord-284409-xiyeceib 95 17 putative putative JJ cord-284409-xiyeceib 95 18 intermediates intermediate NNS cord-284409-xiyeceib 95 19 of of IN cord-284409-xiyeceib 95 20 bnAbs bnAbs NNP cord-284409-xiyeceib 95 21 . . . cord-284409-xiyeceib 96 1 Many many JJ cord-284409-xiyeceib 96 2 of of IN cord-284409-xiyeceib 96 3 them -PRON- PRP cord-284409-xiyeceib 96 4 with with IN cord-284409-xiyeceib 96 5 lower low JJR cord-284409-xiyeceib 96 6 levels level NNS cord-284409-xiyeceib 96 7 of of IN cord-284409-xiyeceib 96 8 somatic somatic JJ cord-284409-xiyeceib 96 9 hyper hyper NN cord-284409-xiyeceib 96 10 mutations mutation NNS cord-284409-xiyeceib 96 11 could could MD cord-284409-xiyeceib 96 12 bind bind VB cord-284409-xiyeceib 96 13 to to IN cord-284409-xiyeceib 96 14 selective selective JJ cord-284409-xiyeceib 96 15 Envs Envs NNP cord-284409-xiyeceib 96 16 ; ; : cord-284409-xiyeceib 96 17 for for IN cord-284409-xiyeceib 96 18 example example NN cord-284409-xiyeceib 96 19 , , , cord-284409-xiyeceib 96 20 intermediates intermediate NNS cord-284409-xiyeceib 96 21 of of IN cord-284409-xiyeceib 96 22 PGT121 PGT121 NNP cord-284409-xiyeceib 96 23 - - HYPH cord-284409-xiyeceib 96 24 134 134 CD cord-284409-xiyeceib 96 25 were be VBD cord-284409-xiyeceib 96 26 able able JJ cord-284409-xiyeceib 96 27 to to TO cord-284409-xiyeceib 96 28 preferentially preferentially RB cord-284409-xiyeceib 96 29 bind bind VB cord-284409-xiyeceib 96 30 native native JJ cord-284409-xiyeceib 96 31 Envs Envs NNP cord-284409-xiyeceib 96 32 relative relative JJ cord-284409-xiyeceib 96 33 to to IN cord-284409-xiyeceib 96 34 monomeric monomeric JJ cord-284409-xiyeceib 96 35 gp120 gp120 NNP cord-284409-xiyeceib 96 36 ( ( -LRB- cord-284409-xiyeceib 96 37 36 36 CD cord-284409-xiyeceib 96 38 ) ) -RRB- cord-284409-xiyeceib 96 39 . . . cord-284409-xiyeceib 97 1 We -PRON- PRP cord-284409-xiyeceib 97 2 also also RB cord-284409-xiyeceib 97 3 identified identify VBD cord-284409-xiyeceib 97 4 2F5-like 2f5-like CD cord-284409-xiyeceib 97 5 antibodies antibody NNS cord-284409-xiyeceib 97 6 ( ( -LRB- cord-284409-xiyeceib 97 7 m66 m66 NN cord-284409-xiyeceib 97 8 and and CC cord-284409-xiyeceib 97 9 m66.6 m66.6 NN cord-284409-xiyeceib 97 10 ) ) -RRB- cord-284409-xiyeceib 97 11 with with IN cord-284409-xiyeceib 97 12 much much RB cord-284409-xiyeceib 97 13 fewer few JJR cord-284409-xiyeceib 97 14 mutations mutation NNS cord-284409-xiyeceib 97 15 than than IN cord-284409-xiyeceib 97 16 2F5 2f5 CD cord-284409-xiyeceib 97 17 and and CC cord-284409-xiyeceib 97 18 suggested suggest VBD cord-284409-xiyeceib 97 19 their -PRON- PRP$ cord-284409-xiyeceib 97 20 use use NN cord-284409-xiyeceib 97 21 as as IN cord-284409-xiyeceib 97 22 a a DT cord-284409-xiyeceib 97 23 model model NN cord-284409-xiyeceib 97 24 system system NN cord-284409-xiyeceib 97 25 for for IN cord-284409-xiyeceib 97 26 elicitation elicitation NN cord-284409-xiyeceib 97 27 of of IN cord-284409-xiyeceib 97 28 such such JJ cord-284409-xiyeceib 97 29 antibodies antibody NNS cord-284409-xiyeceib 97 30 ( ( -LRB- cord-284409-xiyeceib 97 31 37 37 CD cord-284409-xiyeceib 97 32 , , , cord-284409-xiyeceib 97 33 38 38 CD cord-284409-xiyeceib 97 34 ) ) -RRB- cord-284409-xiyeceib 97 35 . . . cord-284409-xiyeceib 98 1 All all PDT cord-284409-xiyeceib 98 2 these these DT cord-284409-xiyeceib 98 3 newly newly RB cord-284409-xiyeceib 98 4 discovered discover VBN cord-284409-xiyeceib 98 5 bnAbs bnabs NN cord-284409-xiyeceib 98 6 raise raise VBP cord-284409-xiyeceib 98 7 the the DT cord-284409-xiyeceib 98 8 hopes hope NNS cord-284409-xiyeceib 98 9 for for IN cord-284409-xiyeceib 98 10 effective effective JJ cord-284409-xiyeceib 98 11 HIV-1 HIV-1 NNP cord-284409-xiyeceib 98 12 vaccine vaccine NN cord-284409-xiyeceib 98 13 development development NN cord-284409-xiyeceib 98 14 as as IN cord-284409-xiyeceib 98 15 they -PRON- PRP cord-284409-xiyeceib 98 16 reveal reveal VBP cord-284409-xiyeceib 98 17 characteristic characteristic JJ cord-284409-xiyeceib 98 18 features feature NNS cord-284409-xiyeceib 98 19 of of IN cord-284409-xiyeceib 98 20 bnAbs bnabs NN cord-284409-xiyeceib 98 21 that that WDT cord-284409-xiyeceib 98 22 could could MD cord-284409-xiyeceib 98 23 help help VB cord-284409-xiyeceib 98 24 us -PRON- PRP cord-284409-xiyeceib 98 25 understand understand VB cord-284409-xiyeceib 98 26 the the DT cord-284409-xiyeceib 98 27 immunological immunological JJ cord-284409-xiyeceib 98 28 basis basis NN cord-284409-xiyeceib 98 29 critical critical JJ cord-284409-xiyeceib 98 30 for for IN cord-284409-xiyeceib 98 31 their -PRON- PRP$ cord-284409-xiyeceib 98 32 production production NN cord-284409-xiyeceib 98 33 and and CC cord-284409-xiyeceib 98 34 also also RB cord-284409-xiyeceib 98 35 serve serve VBP cord-284409-xiyeceib 98 36 as as IN cord-284409-xiyeceib 98 37 templates template NNS cord-284409-xiyeceib 98 38 for for IN cord-284409-xiyeceib 98 39 rational rational JJ cord-284409-xiyeceib 98 40 vaccine vaccine NN cord-284409-xiyeceib 98 41 design design NN cord-284409-xiyeceib 98 42 . . . cord-284409-xiyeceib 99 1 Therefore therefore RB cord-284409-xiyeceib 99 2 , , , cord-284409-xiyeceib 99 3 the the DT cord-284409-xiyeceib 99 4 focus focus NN cord-284409-xiyeceib 99 5 has have VBZ cord-284409-xiyeceib 99 6 been be VBN cord-284409-xiyeceib 99 7 dramatically dramatically RB cord-284409-xiyeceib 99 8 shifted shift VBN cord-284409-xiyeceib 99 9 to to TO cord-284409-xiyeceib 99 10 explore explore VB cord-284409-xiyeceib 99 11 and and CC cord-284409-xiyeceib 99 12 overcome overcome VB cord-284409-xiyeceib 99 13 the the DT cord-284409-xiyeceib 99 14 immunological immunological JJ cord-284409-xiyeceib 99 15 hurdles hurdle NNS cord-284409-xiyeceib 99 16 associated associate VBN cord-284409-xiyeceib 99 17 with with IN cord-284409-xiyeceib 99 18 the the DT cord-284409-xiyeceib 99 19 elicitation elicitation NN cord-284409-xiyeceib 99 20 of of IN cord-284409-xiyeceib 99 21 bnAbs bnabs NN cord-284409-xiyeceib 99 22 , , , cord-284409-xiyeceib 99 23 namely namely RB cord-284409-xiyeceib 99 24 , , , cord-284409-xiyeceib 99 25 extensive extensive JJ cord-284409-xiyeceib 99 26 somatic somatic JJ cord-284409-xiyeceib 99 27 mutations mutation NNS cord-284409-xiyeceib 99 28 of of IN cord-284409-xiyeceib 99 29 bnAbs bnAbs NNP cord-284409-xiyeceib 99 30 . . . cord-284409-xiyeceib 100 1 Major major JJ cord-284409-xiyeceib 100 2 challenges challenge NNS cord-284409-xiyeceib 100 3 remain remain VBP cord-284409-xiyeceib 100 4 in in IN cord-284409-xiyeceib 100 5 identification identification NN cord-284409-xiyeceib 100 6 of of IN cord-284409-xiyeceib 100 7 intermediates intermediate NNS cord-284409-xiyeceib 100 8 with with IN cord-284409-xiyeceib 100 9 a a DT cord-284409-xiyeceib 100 10 minimal minimal JJ cord-284409-xiyeceib 100 11 number number NN cord-284409-xiyeceib 100 12 of of IN cord-284409-xiyeceib 100 13 mutations mutation NNS cord-284409-xiyeceib 100 14 , , , cord-284409-xiyeceib 100 15 and and CC cord-284409-xiyeceib 100 16 appropriate appropriate JJ cord-284409-xiyeceib 100 17 Env Env NNP cord-284409-xiyeceib 100 18 immunogens immunogen NNS cord-284409-xiyeceib 100 19 that that WDT cord-284409-xiyeceib 100 20 would would MD cord-284409-xiyeceib 100 21 bind bind VB cord-284409-xiyeceib 100 22 such such JJ cord-284409-xiyeceib 100 23 intermediates intermediate NNS cord-284409-xiyeceib 100 24 and and CC cord-284409-xiyeceib 100 25 activate activate VB cord-284409-xiyeceib 100 26 BCRs bcr NNS cord-284409-xiyeceib 100 27 , , , cord-284409-xiyeceib 100 28 which which WDT cord-284409-xiyeceib 100 29 can can MD cord-284409-xiyeceib 100 30 lead lead VB cord-284409-xiyeceib 100 31 to to IN cord-284409-xiyeceib 100 32 the the DT cord-284409-xiyeceib 100 33 maturation maturation NN cord-284409-xiyeceib 100 34 of of IN cord-284409-xiyeceib 100 35 the the DT cord-284409-xiyeceib 100 36 intermediate intermediate JJ cord-284409-xiyeceib 100 37 antibodies antibody NNS cord-284409-xiyeceib 100 38 to to IN cord-284409-xiyeceib 100 39 bnAbs bnAbs NNP cord-284409-xiyeceib 100 40 . . . cord-284409-xiyeceib 101 1 Recently recently RB cord-284409-xiyeceib 101 2 , , , cord-284409-xiyeceib 101 3 new new JJ cord-284409-xiyeceib 101 4 paradigms paradigm NNS cord-284409-xiyeceib 101 5 that that WDT cord-284409-xiyeceib 101 6 better well RBR cord-284409-xiyeceib 101 7 fit fit VBP cord-284409-xiyeceib 101 8 our -PRON- PRP$ cord-284409-xiyeceib 101 9 increased increased JJ cord-284409-xiyeceib 101 10 knowledge knowledge NN cord-284409-xiyeceib 101 11 of of IN cord-284409-xiyeceib 101 12 HIV HIV NNP cord-284409-xiyeceib 101 13 immunopathology immunopathology NN cord-284409-xiyeceib 101 14 and and CC cord-284409-xiyeceib 101 15 which which WDT cord-284409-xiyeceib 101 16 may may MD cord-284409-xiyeceib 101 17 be be VB cord-284409-xiyeceib 101 18 more more RBR cord-284409-xiyeceib 101 19 helpful helpful JJ cord-284409-xiyeceib 101 20 in in IN cord-284409-xiyeceib 101 21 guiding guide VBG cord-284409-xiyeceib 101 22 future future JJ cord-284409-xiyeceib 101 23 vaccine vaccine NN cord-284409-xiyeceib 101 24 research research NN cord-284409-xiyeceib 101 25 than than IN cord-284409-xiyeceib 101 26 did do VBD cord-284409-xiyeceib 101 27 past past JJ cord-284409-xiyeceib 101 28 unsuccessful unsuccessful JJ cord-284409-xiyeceib 101 29 approaches approach NNS cord-284409-xiyeceib 101 30 were be VBD cord-284409-xiyeceib 101 31 discussed discuss VBN cord-284409-xiyeceib 101 32 ( ( -LRB- cord-284409-xiyeceib 101 33 17 17 CD cord-284409-xiyeceib 101 34 ) ) -RRB- cord-284409-xiyeceib 101 35 . . . cord-284409-xiyeceib 102 1 We -PRON- PRP cord-284409-xiyeceib 102 2 previously previously RB cord-284409-xiyeceib 102 3 characterized characterize VBD cord-284409-xiyeceib 102 4 the the DT cord-284409-xiyeceib 102 5 human human JJ cord-284409-xiyeceib 102 6 cord cord NN cord-284409-xiyeceib 102 7 blood blood NN cord-284409-xiyeceib 102 8 cell cell NN cord-284409-xiyeceib 102 9 - - HYPH cord-284409-xiyeceib 102 10 derived derive VBN cord-284409-xiyeceib 102 11 IgM IgM NNP cord-284409-xiyeceib 102 12 antibodies antibody NNS cord-284409-xiyeceib 102 13 using use VBG cord-284409-xiyeceib 102 14 454 454 CD cord-284409-xiyeceib 102 15 sequencing sequencing NN cord-284409-xiyeceib 102 16 to to TO cord-284409-xiyeceib 102 17 study study VB cord-284409-xiyeceib 102 18 gene gene NN cord-284409-xiyeceib 102 19 diversity diversity NN cord-284409-xiyeceib 102 20 and and CC cord-284409-xiyeceib 102 21 somatic somatic JJ cord-284409-xiyeceib 102 22 mutations mutation NNS cord-284409-xiyeceib 102 23 ( ( -LRB- cord-284409-xiyeceib 102 24 19 19 CD cord-284409-xiyeceib 102 25 ) ) -RRB- cord-284409-xiyeceib 102 26 . . . cord-284409-xiyeceib 103 1 Naïve naïve JJ cord-284409-xiyeceib 103 2 germline germline JJ cord-284409-xiyeceib 103 3 antibody antibody NN cord-284409-xiyeceib 103 4 repertoires repertoire NNS cord-284409-xiyeceib 103 5 , , , cord-284409-xiyeceib 103 6 particularly particularly RB cord-284409-xiyeceib 103 7 from from IN cord-284409-xiyeceib 103 8 babies baby NNS cord-284409-xiyeceib 103 9 , , , cord-284409-xiyeceib 103 10 may may MD cord-284409-xiyeceib 103 11 be be VB cord-284409-xiyeceib 103 12 quite quite RB cord-284409-xiyeceib 103 13 unique unique JJ cord-284409-xiyeceib 103 14 for for IN cord-284409-xiyeceib 103 15 understanding understand VBG cord-284409-xiyeceib 103 16 the the DT cord-284409-xiyeceib 103 17 B b NN cord-284409-xiyeceib 103 18 cell cell NN cord-284409-xiyeceib 103 19 maturation maturation NN cord-284409-xiyeceib 103 20 pathways pathway NNS cord-284409-xiyeceib 103 21 , , , cord-284409-xiyeceib 103 22 as as IN cord-284409-xiyeceib 103 23 they -PRON- PRP cord-284409-xiyeceib 103 24 can can MD cord-284409-xiyeceib 103 25 also also RB cord-284409-xiyeceib 103 26 mount mount VB cord-284409-xiyeceib 103 27 an an DT cord-284409-xiyeceib 103 28 immune immune JJ cord-284409-xiyeceib 103 29 response response NN cord-284409-xiyeceib 103 30 against against IN cord-284409-xiyeceib 103 31 HIV-1 HIV-1 NNP cord-284409-xiyeceib 103 32 as as IN cord-284409-xiyeceib 103 33 recently recently RB cord-284409-xiyeceib 103 34 found find VBN cord-284409-xiyeceib 103 35 ( ( -LRB- cord-284409-xiyeceib 103 36 39 39 CD cord-284409-xiyeceib 103 37 ) ) -RRB- cord-284409-xiyeceib 103 38 . . . cord-284409-xiyeceib 104 1 Our -PRON- PRP$ cord-284409-xiyeceib 104 2 earlier early JJR cord-284409-xiyeceib 104 3 gene gene NN cord-284409-xiyeceib 104 4 usage usage NN cord-284409-xiyeceib 104 5 analysis analysis NN cord-284409-xiyeceib 104 6 of of IN cord-284409-xiyeceib 104 7 the the DT cord-284409-xiyeceib 104 8 cord cord NN cord-284409-xiyeceib 104 9 blood blood NN cord-284409-xiyeceib 104 10 IgM IgM NNP cord-284409-xiyeceib 104 11 repertoire repertoire NN cord-284409-xiyeceib 104 12 showed show VBD cord-284409-xiyeceib 104 13 the the DT cord-284409-xiyeceib 104 14 biased biased JJ cord-284409-xiyeceib 104 15 IGHV IGHV NNP cord-284409-xiyeceib 104 16 gene gene NN cord-284409-xiyeceib 104 17 usages usage NNS cord-284409-xiyeceib 104 18 ( ( -LRB- cord-284409-xiyeceib 104 19 19 19 CD cord-284409-xiyeceib 104 20 ) ) -RRB- cord-284409-xiyeceib 104 21 as as RB cord-284409-xiyeceib 104 22 similar similar JJ cord-284409-xiyeceib 104 23 to to IN cord-284409-xiyeceib 104 24 adult adult NN cord-284409-xiyeceib 104 25 IgM IgM NNP cord-284409-xiyeceib 104 26 repertoires repertoire NNS cord-284409-xiyeceib 104 27 ( ( -LRB- cord-284409-xiyeceib 104 28 40 40 CD cord-284409-xiyeceib 104 29 ) ) -RRB- cord-284409-xiyeceib 104 30 . . . cord-284409-xiyeceib 105 1 However however RB cord-284409-xiyeceib 105 2 , , , cord-284409-xiyeceib 105 3 we -PRON- PRP cord-284409-xiyeceib 105 4 already already RB cord-284409-xiyeceib 105 5 noted note VBD cord-284409-xiyeceib 105 6 that that IN cord-284409-xiyeceib 105 7 the the DT cord-284409-xiyeceib 105 8 IGHV1 IGHV1 NNP cord-284409-xiyeceib 105 9 - - HYPH cord-284409-xiyeceib 105 10 2 2 CD cord-284409-xiyeceib 105 11 gene gene NN cord-284409-xiyeceib 105 12 usage usage NN cord-284409-xiyeceib 105 13 was be VBD cord-284409-xiyeceib 105 14 significantly significantly RB cord-284409-xiyeceib 105 15 higher high JJR cord-284409-xiyeceib 105 16 in in IN cord-284409-xiyeceib 105 17 the the DT cord-284409-xiyeceib 105 18 cord cord NN cord-284409-xiyeceib 105 19 blood blood NN cord-284409-xiyeceib 105 20 IgM IgM NNP cord-284409-xiyeceib 105 21 repertoire repertoire NNP cord-284409-xiyeceib 105 22 , , , cord-284409-xiyeceib 105 23 i.e. i.e. FW cord-284409-xiyeceib 105 24 , , , cord-284409-xiyeceib 105 25 an an DT cord-284409-xiyeceib 105 26 overall overall JJ cord-284409-xiyeceib 105 27 contribution contribution NN cord-284409-xiyeceib 105 28 of of IN cord-284409-xiyeceib 105 29 20 20 CD cord-284409-xiyeceib 105 30 % % NN cord-284409-xiyeceib 105 31 as as IN cord-284409-xiyeceib 105 32 compared compare VBN cord-284409-xiyeceib 105 33 to to IN cord-284409-xiyeceib 105 34 8 8 CD cord-284409-xiyeceib 105 35 % % NN cord-284409-xiyeceib 105 36 in in IN cord-284409-xiyeceib 105 37 adult adult NN cord-284409-xiyeceib 105 38 IgM IgM NNP cord-284409-xiyeceib 105 39 repertoires repertoire NNS cord-284409-xiyeceib 105 40 . . . cord-284409-xiyeceib 106 1 This this DT cord-284409-xiyeceib 106 2 suggested suggest VBD cord-284409-xiyeceib 106 3 that that IN cord-284409-xiyeceib 106 4 the the DT cord-284409-xiyeceib 106 5 cord cord NN cord-284409-xiyeceib 106 6 blood blood NN cord-284409-xiyeceib 106 7 IgM IgM NNP cord-284409-xiyeceib 106 8 repertoire repertoire NN cord-284409-xiyeceib 106 9 may may MD cord-284409-xiyeceib 106 10 be be VB cord-284409-xiyeceib 106 11 advantageous advantageous JJ cord-284409-xiyeceib 106 12 for for IN cord-284409-xiyeceib 106 13 the the DT cord-284409-xiyeceib 106 14 exploration exploration NN cord-284409-xiyeceib 106 15 of of IN cord-284409-xiyeceib 106 16 the the DT cord-284409-xiyeceib 106 17 IGHV1 IGHV1 NNP cord-284409-xiyeceib 106 18 - - HYPH cord-284409-xiyeceib 106 19 2 2 CD cord-284409-xiyeceib 106 20 * * NFP cord-284409-xiyeceib 106 21 02 02 CD cord-284409-xiyeceib 106 22 lineages lineage NNS cord-284409-xiyeceib 106 23 when when WRB cord-284409-xiyeceib 106 24 studying study VBG cord-284409-xiyeceib 106 25 germline germline JJ cord-284409-xiyeceib 106 26 precursors precursor NNS cord-284409-xiyeceib 106 27 and and CC cord-284409-xiyeceib 106 28 intermediates intermediate NNS cord-284409-xiyeceib 106 29 of of IN cord-284409-xiyeceib 106 30 VRC01 VRC01 NNP cord-284409-xiyeceib 106 31 heavy heavy JJ cord-284409-xiyeceib 106 32 chain chain NN cord-284409-xiyeceib 106 33 . . . cord-284409-xiyeceib 107 1 A a DT cord-284409-xiyeceib 107 2 total total NN cord-284409-xiyeceib 107 3 of of IN cord-284409-xiyeceib 107 4 5,624 5,624 CD cord-284409-xiyeceib 107 5 heavy heavy JJ cord-284409-xiyeceib 107 6 chain chain NN cord-284409-xiyeceib 107 7 and and CC cord-284409-xiyeceib 107 8 1,096 1,096 CD cord-284409-xiyeceib 107 9 light light JJ cord-284409-xiyeceib 107 10 chain chain NN cord-284409-xiyeceib 107 11 sequences sequence NNS cord-284409-xiyeceib 107 12 of of IN cord-284409-xiyeceib 107 13 IGHV1 IGHV1 NNP cord-284409-xiyeceib 107 14 - - SYM cord-284409-xiyeceib 107 15 2 2 CD cord-284409-xiyeceib 107 16 and and CC cord-284409-xiyeceib 107 17 IGKV3 igkv3 CD cord-284409-xiyeceib 107 18 - - HYPH cord-284409-xiyeceib 107 19 11 11 CD cord-284409-xiyeceib 107 20 lineages lineage NNS cord-284409-xiyeceib 107 21 , , , cord-284409-xiyeceib 107 22 respectively respectively RB cord-284409-xiyeceib 107 23 , , , cord-284409-xiyeceib 107 24 were be VBD cord-284409-xiyeceib 107 25 used use VBN cord-284409-xiyeceib 107 26 to to IN cord-284409-xiyeceib 107 27 Frontiers Frontiers NNP cord-284409-xiyeceib 107 28 in in IN cord-284409-xiyeceib 107 29 Immunology Immunology NNP cord-284409-xiyeceib 107 30 | | NNP cord-284409-xiyeceib 107 31 HIV HIV NNP cord-284409-xiyeceib 107 32 and and CC cord-284409-xiyeceib 107 33 AIDS AIDS NNP cord-284409-xiyeceib 107 34 select select VBP cord-284409-xiyeceib 107 35 the the DT cord-284409-xiyeceib 107 36 top top JJ cord-284409-xiyeceib 107 37 10 10 CD cord-284409-xiyeceib 107 38 sequences sequence NNS cord-284409-xiyeceib 107 39 as as IN cord-284409-xiyeceib 107 40 closest close JJS cord-284409-xiyeceib 107 41 intermediates intermediate NNS cord-284409-xiyeceib 107 42 for for IN cord-284409-xiyeceib 107 43 VRC01 VRC01 NNP cord-284409-xiyeceib 107 44 in in IN cord-284409-xiyeceib 107 45 each each DT cord-284409-xiyeceib 107 46 heavy heavy JJ cord-284409-xiyeceib 107 47 and and CC cord-284409-xiyeceib 107 48 light light JJ cord-284409-xiyeceib 107 49 chain chain NN cord-284409-xiyeceib 107 50 categories category NNS cord-284409-xiyeceib 107 51 by by IN cord-284409-xiyeceib 107 52 using use VBG cord-284409-xiyeceib 107 53 local local JJ cord-284409-xiyeceib 107 54 BLAST blast NN cord-284409-xiyeceib 107 55 searching search VBG cord-284409-xiyeceib 107 56 . . . cord-284409-xiyeceib 108 1 We -PRON- PRP cord-284409-xiyeceib 108 2 performed perform VBD cord-284409-xiyeceib 108 3 phylogenetic phylogenetic JJ cord-284409-xiyeceib 108 4 analysis analysis NN cord-284409-xiyeceib 108 5 of of IN cord-284409-xiyeceib 108 6 the the DT cord-284409-xiyeceib 108 7 selected select VBN cord-284409-xiyeceib 108 8 sequences sequence NNS cord-284409-xiyeceib 108 9 to to TO cord-284409-xiyeceib 108 10 identify identify VB cord-284409-xiyeceib 108 11 genetic genetic JJ cord-284409-xiyeceib 108 12 relationships relationship NNS cord-284409-xiyeceib 108 13 among among IN cord-284409-xiyeceib 108 14 VRC01-like vrc01-like NN cord-284409-xiyeceib 108 15 intermediates intermediate NNS cord-284409-xiyeceib 108 16 of of IN cord-284409-xiyeceib 108 17 heavy heavy JJ cord-284409-xiyeceib 108 18 ( ( -LRB- cord-284409-xiyeceib 108 19 Figure figure NN cord-284409-xiyeceib 108 20 2A 2a CD cord-284409-xiyeceib 108 21 ) ) -RRB- cord-284409-xiyeceib 108 22 and and CC cord-284409-xiyeceib 108 23 light light NN cord-284409-xiyeceib 108 24 ( ( -LRB- cord-284409-xiyeceib 108 25 Figure figure NN cord-284409-xiyeceib 108 26 2B 2b CD cord-284409-xiyeceib 108 27 ) ) -RRB- cord-284409-xiyeceib 108 28 chains chain NNS cord-284409-xiyeceib 108 29 . . . cord-284409-xiyeceib 109 1 We -PRON- PRP cord-284409-xiyeceib 109 2 found find VBD cord-284409-xiyeceib 109 3 two two CD cord-284409-xiyeceib 109 4 of of IN cord-284409-xiyeceib 109 5 the the DT cord-284409-xiyeceib 109 6 antibody antibody NN cord-284409-xiyeceib 109 7 heavy heavy JJ cord-284409-xiyeceib 109 8 chains chain NNS cord-284409-xiyeceib 109 9 , , , cord-284409-xiyeceib 109 10 HWAV6 HWAV6 NNP cord-284409-xiyeceib 109 11 and and CC cord-284409-xiyeceib 109 12 JHEDT JHEDT NNP cord-284409-xiyeceib 109 13 , , , cord-284409-xiyeceib 109 14 which which WDT cord-284409-xiyeceib 109 15 were be VBD cord-284409-xiyeceib 109 16 100 100 CD cord-284409-xiyeceib 109 17 % % NN cord-284409-xiyeceib 109 18 identical identical JJ cord-284409-xiyeceib 109 19 to to IN cord-284409-xiyeceib 109 20 the the DT cord-284409-xiyeceib 109 21 IGHV1 IGHV1 NNP cord-284409-xiyeceib 109 22 - - SYM cord-284409-xiyeceib 109 23 2 2 CD cord-284409-xiyeceib 109 24 * * NFP cord-284409-xiyeceib 109 25 02 02 CD cord-284409-xiyeceib 109 26 germline germline NN cord-284409-xiyeceib 109 27 sequence sequence NN cord-284409-xiyeceib 109 28 . . . cord-284409-xiyeceib 110 1 Remarkably remarkably RB cord-284409-xiyeceib 110 2 , , , cord-284409-xiyeceib 110 3 their -PRON- PRP$ cord-284409-xiyeceib 110 4 CDRH3 cdrh3 NN cord-284409-xiyeceib 110 5 sequences sequence NNS cord-284409-xiyeceib 110 6 had have VBD cord-284409-xiyeceib 110 7 the the DT cord-284409-xiyeceib 110 8 same same JJ cord-284409-xiyeceib 110 9 length length NN cord-284409-xiyeceib 110 10 ( ( -LRB- cord-284409-xiyeceib 110 11 14 14 CD cord-284409-xiyeceib 110 12 amino amino JJ cord-284409-xiyeceib 110 13 acids acid NNS cord-284409-xiyeceib 110 14 ) ) -RRB- cord-284409-xiyeceib 110 15 as as IN cord-284409-xiyeceib 110 16 that that DT cord-284409-xiyeceib 110 17 of of IN cord-284409-xiyeceib 110 18 the the DT cord-284409-xiyeceib 110 19 VRC01 VRC01 NNP cord-284409-xiyeceib 110 20 heavy heavy JJ cord-284409-xiyeceib 110 21 chain chain NN cord-284409-xiyeceib 110 22 . . . cord-284409-xiyeceib 111 1 For for IN cord-284409-xiyeceib 111 2 these these DT cord-284409-xiyeceib 111 3 10 10 CD cord-284409-xiyeceib 111 4 heavy heavy JJ cord-284409-xiyeceib 111 5 chain chain NN cord-284409-xiyeceib 111 6 sequences sequence NNS cord-284409-xiyeceib 111 7 , , , cord-284409-xiyeceib 111 8 the the DT cord-284409-xiyeceib 111 9 CDRH3 cdrh3 NN cord-284409-xiyeceib 111 10 lengths length NNS cord-284409-xiyeceib 111 11 ranged range VBD cord-284409-xiyeceib 111 12 from from IN cord-284409-xiyeceib 111 13 8 8 CD cord-284409-xiyeceib 111 14 to to TO cord-284409-xiyeceib 111 15 16 16 CD cord-284409-xiyeceib 111 16 amino amino JJ cord-284409-xiyeceib 111 17 acids acid NNS cord-284409-xiyeceib 111 18 with with IN cord-284409-xiyeceib 111 19 sequence sequence NN cord-284409-xiyeceib 111 20 variations variation NNS cord-284409-xiyeceib 111 21 at at IN cord-284409-xiyeceib 111 22 the the DT cord-284409-xiyeceib 111 23 junctions junction NNS cord-284409-xiyeceib 111 24 . . . cord-284409-xiyeceib 112 1 One one CD cord-284409-xiyeceib 112 2 of of IN cord-284409-xiyeceib 112 3 the the DT cord-284409-xiyeceib 112 4 germline germline NN cord-284409-xiyeceib 112 5 sequences sequence NNS cord-284409-xiyeceib 112 6 , , , cord-284409-xiyeceib 112 7 JHEDT JHEDT NNP cord-284409-xiyeceib 112 8 , , , cord-284409-xiyeceib 112 9 had have VBD cord-284409-xiyeceib 112 10 a a DT cord-284409-xiyeceib 112 11 point point NN cord-284409-xiyeceib 112 12 mutation mutation NN cord-284409-xiyeceib 112 13 at at IN cord-284409-xiyeceib 112 14 Cys100Tyr Cys100Tyr NNP cord-284409-xiyeceib 112 15 ( ( -LRB- cord-284409-xiyeceib 112 16 Kabat Kabat NNP cord-284409-xiyeceib 112 17 numbering numbering NN cord-284409-xiyeceib 112 18 ) ) -RRB- cord-284409-xiyeceib 112 19 of of IN cord-284409-xiyeceib 112 20 CDRH3 cdrh3 NN cord-284409-xiyeceib 112 21 that that WDT cord-284409-xiyeceib 112 22 exactly exactly RB cord-284409-xiyeceib 112 23 mimicked mimic VBD cord-284409-xiyeceib 112 24 the the DT cord-284409-xiyeceib 112 25 residue residue NN cord-284409-xiyeceib 112 26 Tyr100 Tyr100 NNS cord-284409-xiyeceib 112 27 of of IN cord-284409-xiyeceib 112 28 CDRH3 cdrh3 NN cord-284409-xiyeceib 112 29 in in IN cord-284409-xiyeceib 112 30 VRC01 VRC01 NNP cord-284409-xiyeceib 112 31 . . . cord-284409-xiyeceib 113 1 The the DT cord-284409-xiyeceib 113 2 residue residue NN cord-284409-xiyeceib 113 3 Tyr100 Tyr100 NFP cord-284409-xiyeceib 113 4 at at IN cord-284409-xiyeceib 113 5 CDRH3 cdrh3 NN cord-284409-xiyeceib 113 6 of of IN cord-284409-xiyeceib 113 7 VRC01 VRC01 NNP cord-284409-xiyeceib 113 8 is be VBZ cord-284409-xiyeceib 113 9 most most RBS cord-284409-xiyeceib 113 10 likely likely RB cord-284409-xiyeceib 113 11 contributed contribute VBN cord-284409-xiyeceib 113 12 by by IN cord-284409-xiyeceib 113 13 the the DT cord-284409-xiyeceib 113 14 IGHD3 IGHD3 NNP cord-284409-xiyeceib 113 15 - - HYPH cord-284409-xiyeceib 113 16 16 16 CD cord-284409-xiyeceib 113 17 * * NFP cord-284409-xiyeceib 113 18 02 02 CD cord-284409-xiyeceib 113 19 germline germline NN cord-284409-xiyeceib 113 20 with with IN cord-284409-xiyeceib 113 21 a a DT cord-284409-xiyeceib 113 22 point point NN cord-284409-xiyeceib 113 23 mutation mutation NN cord-284409-xiyeceib 113 24 Cys100Tyr cys100tyr NN cord-284409-xiyeceib 113 25 . . . cord-284409-xiyeceib 114 1 The the DT cord-284409-xiyeceib 114 2 other other JJ cord-284409-xiyeceib 114 3 heavy heavy JJ cord-284409-xiyeceib 114 4 chain chain NN cord-284409-xiyeceib 114 5 sequence sequence NN cord-284409-xiyeceib 114 6 I76AT I76AT NNP cord-284409-xiyeceib 114 7 , , , cord-284409-xiyeceib 114 8 which which WDT cord-284409-xiyeceib 114 9 was be VBD cord-284409-xiyeceib 114 10 the the DT cord-284409-xiyeceib 114 11 closest close JJS cord-284409-xiyeceib 114 12 to to IN cord-284409-xiyeceib 114 13 VRC01 VRC01 NNP cord-284409-xiyeceib 114 14 heavy heavy JJ cord-284409-xiyeceib 114 15 chain chain NN cord-284409-xiyeceib 114 16 , , , cord-284409-xiyeceib 114 17 also also RB cord-284409-xiyeceib 114 18 had have VBD cord-284409-xiyeceib 114 19 the the DT cord-284409-xiyeceib 114 20 same same JJ cord-284409-xiyeceib 114 21 mutation mutation NN cord-284409-xiyeceib 114 22 at at IN cord-284409-xiyeceib 114 23 Cys100Tyr Cys100Tyr NNP cord-284409-xiyeceib 114 24 . . . cord-284409-xiyeceib 115 1 One one CD cord-284409-xiyeceib 115 2 of of IN cord-284409-xiyeceib 115 3 the the DT cord-284409-xiyeceib 115 4 other other JJ cord-284409-xiyeceib 115 5 germline germline NN cord-284409-xiyeceib 115 6 sequences sequence NNS cord-284409-xiyeceib 115 7 , , , cord-284409-xiyeceib 115 8 HWAV6 HWAV6 NNP cord-284409-xiyeceib 115 9 , , , cord-284409-xiyeceib 115 10 had have VBD cord-284409-xiyeceib 115 11 Trp100B Trp100B VBN cord-284409-xiyeceib 115 12 ( ( -LRB- cord-284409-xiyeceib 115 13 Kabat Kabat NNP cord-284409-xiyeceib 115 14 numbering numbering NN cord-284409-xiyeceib 115 15 ) ) -RRB- cord-284409-xiyeceib 115 16 of of IN cord-284409-xiyeceib 115 17 CDRH3 cdrh3 NN cord-284409-xiyeceib 115 18 that that WDT cord-284409-xiyeceib 115 19 exactly exactly RB cord-284409-xiyeceib 115 20 mimicked mimic VBD cord-284409-xiyeceib 115 21 the the DT cord-284409-xiyeceib 115 22 residue residue NN cord-284409-xiyeceib 115 23 Trp100B trp100b NN cord-284409-xiyeceib 115 24 of of IN cord-284409-xiyeceib 115 25 CDRH3 cdrh3 NN cord-284409-xiyeceib 115 26 in in IN cord-284409-xiyeceib 115 27 VRC01 VRC01 NNP cord-284409-xiyeceib 115 28 . . . cord-284409-xiyeceib 116 1 Intriguingly intriguingly RB cord-284409-xiyeceib 116 2 , , , cord-284409-xiyeceib 116 3 the the DT cord-284409-xiyeceib 116 4 Trp100B trp100b NN cord-284409-xiyeceib 116 5 residue residue NN cord-284409-xiyeceib 116 6 is be VBZ cord-284409-xiyeceib 116 7 a a DT cord-284409-xiyeceib 116 8 junctional junctional JJ cord-284409-xiyeceib 116 9 amino amino NN cord-284409-xiyeceib 116 10 acid acid NN cord-284409-xiyeceib 116 11 of of IN cord-284409-xiyeceib 116 12 the the DT cord-284409-xiyeceib 116 13 CDRH3 cdrh3 NN cord-284409-xiyeceib 116 14 in in IN cord-284409-xiyeceib 116 15 germline germline JJ cord-284409-xiyeceib 116 16 HWAV6 HWAV6 NNS cord-284409-xiyeceib 116 17 , , , cord-284409-xiyeceib 116 18 and and CC cord-284409-xiyeceib 116 19 it -PRON- PRP cord-284409-xiyeceib 116 20 exactly exactly RB cord-284409-xiyeceib 116 21 replicates replicate VBZ cord-284409-xiyeceib 116 22 the the DT cord-284409-xiyeceib 116 23 Trp100B trp100b NN cord-284409-xiyeceib 116 24 junctional junctional JJ cord-284409-xiyeceib 116 25 residue residue NN cord-284409-xiyeceib 116 26 of of IN cord-284409-xiyeceib 116 27 CDRH3 cdrh3 NN cord-284409-xiyeceib 116 28 in in IN cord-284409-xiyeceib 116 29 VRC01 VRC01 NNP cord-284409-xiyeceib 116 30 . . . cord-284409-xiyeceib 117 1 This this DT cord-284409-xiyeceib 117 2 suggests suggest VBZ cord-284409-xiyeceib 117 3 a a DT cord-284409-xiyeceib 117 4 possible possible JJ cord-284409-xiyeceib 117 5 maturation maturation NN cord-284409-xiyeceib 117 6 mechanism mechanism NN cord-284409-xiyeceib 117 7 involved involve VBN cord-284409-xiyeceib 117 8 in in IN cord-284409-xiyeceib 117 9 the the DT cord-284409-xiyeceib 117 10 VRC01-like vrc01-like NN cord-284409-xiyeceib 117 11 intermediates intermediate NNS cord-284409-xiyeceib 117 12 where where WRB cord-284409-xiyeceib 117 13 junctional junctional JJ cord-284409-xiyeceib 117 14 amino amino NN cord-284409-xiyeceib 117 15 acids acid NNS cord-284409-xiyeceib 117 16 could could MD cord-284409-xiyeceib 117 17 determine determine VB cord-284409-xiyeceib 117 18 the the DT cord-284409-xiyeceib 117 19 maturation maturation NN cord-284409-xiyeceib 117 20 pathway pathway NN cord-284409-xiyeceib 117 21 far far RB cord-284409-xiyeceib 117 22 preceding precede VBG cord-284409-xiyeceib 117 23 the the DT cord-284409-xiyeceib 117 24 somatic somatic JJ cord-284409-xiyeceib 117 25 hypermutation hypermutation NN cord-284409-xiyeceib 117 26 required require VBN cord-284409-xiyeceib 117 27 for for IN cord-284409-xiyeceib 117 28 affinity affinity NN cord-284409-xiyeceib 117 29 maturation maturation NN cord-284409-xiyeceib 117 30 ( ( -LRB- cord-284409-xiyeceib 117 31 41 41 CD cord-284409-xiyeceib 117 32 ) ) -RRB- cord-284409-xiyeceib 117 33 . . . cord-284409-xiyeceib 118 1 Most Most JJS cord-284409-xiyeceib 118 2 of of IN cord-284409-xiyeceib 118 3 the the DT cord-284409-xiyeceib 118 4 closest close JJS cord-284409-xiyeceib 118 5 IGHV IGHV NNP cord-284409-xiyeceib 118 6 genes gene NNS cord-284409-xiyeceib 118 7 , , , cord-284409-xiyeceib 118 8 8 8 CD cord-284409-xiyeceib 118 9 out out IN cord-284409-xiyeceib 118 10 of of IN cord-284409-xiyeceib 118 11 10 10 CD cord-284409-xiyeceib 118 12 shown show VBN cord-284409-xiyeceib 118 13 in in IN cord-284409-xiyeceib 118 14 the the DT cord-284409-xiyeceib 118 15 Figure figure NN cord-284409-xiyeceib 118 16 2A 2a NN cord-284409-xiyeceib 118 17 , , , cord-284409-xiyeceib 118 18 have have VBP cord-284409-xiyeceib 118 19 at at RB cord-284409-xiyeceib 118 20 least least RBS cord-284409-xiyeceib 118 21 one one CD cord-284409-xiyeceib 118 22 mutation mutation NN cord-284409-xiyeceib 118 23 in in IN cord-284409-xiyeceib 118 24 the the DT cord-284409-xiyeceib 118 25 V v NN cord-284409-xiyeceib 118 26 region region NN cord-284409-xiyeceib 118 27 , , , cord-284409-xiyeceib 118 28 and and CC cord-284409-xiyeceib 118 29 www.frontiersin.org www.frontiersin.org IN cord-284409-xiyeceib 118 30 two two CD cord-284409-xiyeceib 118 31 sequences sequence NNS cord-284409-xiyeceib 118 32 , , , cord-284409-xiyeceib 118 33 G2W0 G2W0 NNP cord-284409-xiyeceib 118 34 T T NNP cord-284409-xiyeceib 118 35 and and CC cord-284409-xiyeceib 118 36 GD60C gd60c NN cord-284409-xiyeceib 118 37 , , , cord-284409-xiyeceib 118 38 have have VBP cord-284409-xiyeceib 118 39 two two CD cord-284409-xiyeceib 118 40 mutations mutation NNS cord-284409-xiyeceib 118 41 at at IN cord-284409-xiyeceib 118 42 each each DT cord-284409-xiyeceib 118 43 of of IN cord-284409-xiyeceib 118 44 the the DT cord-284409-xiyeceib 118 45 CDRH1 cdrh1 NN cord-284409-xiyeceib 118 46 . . . cord-284409-xiyeceib 119 1 The the DT cord-284409-xiyeceib 119 2 pre pre JJ cord-284409-xiyeceib 119 3 - - JJ cord-284409-xiyeceib 119 4 existing existing JJ cord-284409-xiyeceib 119 5 amino amino NN cord-284409-xiyeceib 119 6 acid acid NN cord-284409-xiyeceib 119 7 mutations mutation NNS cord-284409-xiyeceib 119 8 found find VBN cord-284409-xiyeceib 119 9 in in IN cord-284409-xiyeceib 119 10 the the DT cord-284409-xiyeceib 119 11 V v NN cord-284409-xiyeceib 119 12 region region NN cord-284409-xiyeceib 119 13 and and CC cord-284409-xiyeceib 119 14 CDRH3 cdrh3 NN cord-284409-xiyeceib 119 15 sequence sequence NN cord-284409-xiyeceib 119 16 information information NN cord-284409-xiyeceib 119 17 may may MD cord-284409-xiyeceib 119 18 inform inform VB cord-284409-xiyeceib 119 19 the the DT cord-284409-xiyeceib 119 20 design design NN cord-284409-xiyeceib 119 21 of of IN cord-284409-xiyeceib 119 22 heavy heavy JJ cord-284409-xiyeceib 119 23 chain chain NN cord-284409-xiyeceib 119 24 germline germline NN cord-284409-xiyeceib 119 25 - - HYPH cord-284409-xiyeceib 119 26 like like JJ cord-284409-xiyeceib 119 27 precursors precursor NNS cord-284409-xiyeceib 119 28 and and CC cord-284409-xiyeceib 119 29 intermediates intermediate NNS cord-284409-xiyeceib 119 30 , , , cord-284409-xiyeceib 119 31 and and CC cord-284409-xiyeceib 119 32 help help VBP cord-284409-xiyeceib 119 33 naturally naturally RB cord-284409-xiyeceib 119 34 reconstruct reconstruct VB cord-284409-xiyeceib 119 35 the the DT cord-284409-xiyeceib 119 36 B b NN cord-284409-xiyeceib 119 37 cell cell NN cord-284409-xiyeceib 119 38 clonal clonal JJ cord-284409-xiyeceib 119 39 lineages lineage NNS cord-284409-xiyeceib 119 40 in in IN cord-284409-xiyeceib 119 41 the the DT cord-284409-xiyeceib 119 42 maturation maturation NN cord-284409-xiyeceib 119 43 pathways pathway NNS cord-284409-xiyeceib 119 44 of of IN cord-284409-xiyeceib 119 45 VRC01 VRC01 NNP cord-284409-xiyeceib 119 46 . . . cord-284409-xiyeceib 120 1 Light light JJ cord-284409-xiyeceib 120 2 chain chain NN cord-284409-xiyeceib 120 3 recognition recognition NN cord-284409-xiyeceib 120 4 of of IN cord-284409-xiyeceib 120 5 Envs Envs NNP cord-284409-xiyeceib 120 6 by by IN cord-284409-xiyeceib 120 7 VRC01 VRC01 NNP cord-284409-xiyeceib 120 8 and and CC cord-284409-xiyeceib 120 9 VRC01-related VRC01-related NNP cord-284409-xiyeceib 120 10 antibodies antibody NNS cord-284409-xiyeceib 120 11 has have VBZ cord-284409-xiyeceib 120 12 been be VBN cord-284409-xiyeceib 120 13 studied study VBN cord-284409-xiyeceib 120 14 in in IN cord-284409-xiyeceib 120 15 detail detail NN cord-284409-xiyeceib 120 16 using use VBG cord-284409-xiyeceib 120 17 structural structural JJ cord-284409-xiyeceib 120 18 and and CC cord-284409-xiyeceib 120 19 454 454 CD cord-284409-xiyeceib 120 20 sequencing sequencing NN cord-284409-xiyeceib 120 21 data datum NNS cord-284409-xiyeceib 120 22 ( ( -LRB- cord-284409-xiyeceib 120 23 33 33 CD cord-284409-xiyeceib 120 24 ) ) -RRB- cord-284409-xiyeceib 120 25 . . . cord-284409-xiyeceib 121 1 The the DT cord-284409-xiyeceib 121 2 VRC01 VRC01 NNP cord-284409-xiyeceib 121 3 light light JJ cord-284409-xiyeceib 121 4 chain chain NN cord-284409-xiyeceib 121 5 commonly commonly RB cord-284409-xiyeceib 121 6 uses use VBZ cord-284409-xiyeceib 121 7 the the DT cord-284409-xiyeceib 121 8 IGKV1 IGKV1 NNP cord-284409-xiyeceib 121 9 - - HYPH cord-284409-xiyeceib 121 10 33 33 CD cord-284409-xiyeceib 121 11 lineage lineage NN cord-284409-xiyeceib 121 12 and and CC cord-284409-xiyeceib 121 13 has have VBZ cord-284409-xiyeceib 121 14 a a DT cord-284409-xiyeceib 121 15 characteristic characteristic JJ cord-284409-xiyeceib 121 16 five five CD cord-284409-xiyeceib 121 17 amino amino NN cord-284409-xiyeceib 121 18 acid acid NN cord-284409-xiyeceib 121 19 long long RB cord-284409-xiyeceib 121 20 CDRL3 cdrl3 NN cord-284409-xiyeceib 121 21 and and CC cord-284409-xiyeceib 121 22 a a DT cord-284409-xiyeceib 121 23 distinctive distinctive JJ cord-284409-xiyeceib 121 24 two two CD cord-284409-xiyeceib 121 25 amino amino NN cord-284409-xiyeceib 121 26 acid acid NN cord-284409-xiyeceib 121 27 deletion deletion NN cord-284409-xiyeceib 121 28 in in IN cord-284409-xiyeceib 121 29 CDR CDR NNP cord-284409-xiyeceib 121 30 L1 L1 NNP cord-284409-xiyeceib 121 31 . . . cord-284409-xiyeceib 122 1 Therefore therefore RB cord-284409-xiyeceib 122 2 , , , cord-284409-xiyeceib 122 3 we -PRON- PRP cord-284409-xiyeceib 122 4 selected select VBD cord-284409-xiyeceib 122 5 the the DT cord-284409-xiyeceib 122 6 IGKV1 IGKV1 NNP cord-284409-xiyeceib 122 7 - - HYPH cord-284409-xiyeceib 122 8 33 33 CD cord-284409-xiyeceib 122 9 lineage lineage NN cord-284409-xiyeceib 122 10 sequences sequence NNS cord-284409-xiyeceib 122 11 with with IN cord-284409-xiyeceib 122 12 five five CD cord-284409-xiyeceib 122 13 amino amino NN cord-284409-xiyeceib 122 14 acid acid NN cord-284409-xiyeceib 122 15 length length NN cord-284409-xiyeceib 123 1 CDRL3s cdrl3s RB cord-284409-xiyeceib 123 2 , , , cord-284409-xiyeceib 123 3 but but CC cord-284409-xiyeceib 123 4 no no DT cord-284409-xiyeceib 123 5 sequences sequence NNS cord-284409-xiyeceib 123 6 were be VBD cord-284409-xiyeceib 123 7 found find VBN cord-284409-xiyeceib 123 8 with with IN cord-284409-xiyeceib 123 9 a a DT cord-284409-xiyeceib 123 10 two two CD cord-284409-xiyeceib 123 11 amino amino NN cord-284409-xiyeceib 123 12 acid acid NN cord-284409-xiyeceib 123 13 deletion deletion NN cord-284409-xiyeceib 123 14 in in IN cord-284409-xiyeceib 123 15 CDR CDR NNP cord-284409-xiyeceib 123 16 L1 L1 NNP cord-284409-xiyeceib 123 17 ( ( -LRB- cord-284409-xiyeceib 123 18 Figure figure NN cord-284409-xiyeceib 123 19 2B 2b CD cord-284409-xiyeceib 123 20 ) ) -RRB- cord-284409-xiyeceib 123 21 . . . cord-284409-xiyeceib 124 1 All all DT cord-284409-xiyeceib 124 2 of of IN cord-284409-xiyeceib 124 3 them -PRON- PRP cord-284409-xiyeceib 124 4 had have VBD cord-284409-xiyeceib 124 5 either either CC cord-284409-xiyeceib 124 6 framework framework NN cord-284409-xiyeceib 124 7 or or CC cord-284409-xiyeceib 124 8 CDR cdr NN cord-284409-xiyeceib 124 9 mutations mutation NNS cord-284409-xiyeceib 124 10 or or CC cord-284409-xiyeceib 124 11 both both DT cord-284409-xiyeceib 124 12 . . . cord-284409-xiyeceib 125 1 Four four CD cord-284409-xiyeceib 125 2 of of IN cord-284409-xiyeceib 125 3 them -PRON- PRP cord-284409-xiyeceib 125 4 had have VBD cord-284409-xiyeceib 125 5 a a DT cord-284409-xiyeceib 125 6 point point NN cord-284409-xiyeceib 125 7 mutation mutation NN cord-284409-xiyeceib 125 8 at at IN cord-284409-xiyeceib 125 9 CDRL1 CDRL1 NNS cord-284409-xiyeceib 125 10 and and CC cord-284409-xiyeceib 125 11 seven seven CD cord-284409-xiyeceib 125 12 of of IN cord-284409-xiyeceib 125 13 them -PRON- PRP cord-284409-xiyeceib 125 14 had have VBD cord-284409-xiyeceib 125 15 a a DT cord-284409-xiyeceib 125 16 point point NN cord-284409-xiyeceib 125 17 mutation mutation NN cord-284409-xiyeceib 125 18 at at IN cord-284409-xiyeceib 125 19 CDRL3 CDRL3 NNP cord-284409-xiyeceib 125 20 . . . cord-284409-xiyeceib 126 1 The the DT cord-284409-xiyeceib 126 2 structural structural JJ cord-284409-xiyeceib 126 3 basis basis NN cord-284409-xiyeceib 126 4 for for IN cord-284409-xiyeceib 126 5 germline germline JJ cord-284409-xiyeceib 126 6 gene gene NN cord-284409-xiyeceib 126 7 usage usage NN cord-284409-xiyeceib 126 8 of of IN cord-284409-xiyeceib 126 9 VRC01-related VRC01-related NNP cord-284409-xiyeceib 126 10 antibodies antibody NNS cord-284409-xiyeceib 126 11 targeting target VBG cord-284409-xiyeceib 126 12 the the DT cord-284409-xiyeceib 126 13 CD4bs CD4bs NNP cord-284409-xiyeceib 126 14 has have VBZ cord-284409-xiyeceib 126 15 been be VBN cord-284409-xiyeceib 126 16 previously previously RB cord-284409-xiyeceib 126 17 described describe VBN cord-284409-xiyeceib 126 18 ( ( -LRB- cord-284409-xiyeceib 126 19 42 42 CD cord-284409-xiyeceib 126 20 ) ) -RRB- cord-284409-xiyeceib 126 21 , , , cord-284409-xiyeceib 126 22 which which WDT cord-284409-xiyeceib 126 23 revealed reveal VBD cord-284409-xiyeceib 126 24 a a DT cord-284409-xiyeceib 126 25 set set NN cord-284409-xiyeceib 126 26 of of IN cord-284409-xiyeceib 126 27 signature signature NN cord-284409-xiyeceib 126 28 features feature NNS cord-284409-xiyeceib 126 29 for for IN cord-284409-xiyeceib 126 30 these these DT cord-284409-xiyeceib 126 31 antibodies antibody NNS cord-284409-xiyeceib 126 32 that that WDT cord-284409-xiyeceib 126 33 were be VBD cord-284409-xiyeceib 126 34 verified verify VBN cord-284409-xiyeceib 126 35 by by IN cord-284409-xiyeceib 126 36 mutagenesis mutagenesis NN cord-284409-xiyeceib 126 37 . . . cord-284409-xiyeceib 127 1 These these DT cord-284409-xiyeceib 127 2 signature signature NN cord-284409-xiyeceib 127 3 features feature NNS cord-284409-xiyeceib 127 4 explained explain VBD cord-284409-xiyeceib 127 5 the the DT cord-284409-xiyeceib 127 6 origin origin NN cord-284409-xiyeceib 127 7 of of IN cord-284409-xiyeceib 127 8 the the DT cord-284409-xiyeceib 127 9 IGVH1 IGVH1 NNP cord-284409-xiyeceib 127 10 - - HYPH cord-284409-xiyeceib 127 11 2 2 CD cord-284409-xiyeceib 127 12 gene gene NN cord-284409-xiyeceib 127 13 and and CC cord-284409-xiyeceib 127 14 antibody antibody NN cord-284409-xiyeceib 127 15 resistance resistance NN cord-284409-xiyeceib 127 16 for for IN cord-284409-xiyeceib 127 17 some some DT cord-284409-xiyeceib 127 18 Env Env NNP cord-284409-xiyeceib 127 19 sequences sequence NNS cord-284409-xiyeceib 127 20 . . . cord-284409-xiyeceib 128 1 We -PRON- PRP cord-284409-xiyeceib 128 2 found find VBD cord-284409-xiyeceib 128 3 that that IN cord-284409-xiyeceib 128 4 characteristic characteristic JJ cord-284409-xiyeceib 128 5 residues residue NNS cord-284409-xiyeceib 128 6 including include VBG cord-284409-xiyeceib 128 7 the the DT cord-284409-xiyeceib 128 8 Trp100B trp100b NN cord-284409-xiyeceib 128 9 of of IN cord-284409-xiyeceib 128 10 heavy heavy JJ cord-284409-xiyeceib 128 11 chains chain NNS cord-284409-xiyeceib 128 12 were be VBD cord-284409-xiyeceib 128 13 conserved conserve VBN cord-284409-xiyeceib 128 14 while while IN cord-284409-xiyeceib 128 15 light light JJ cord-284409-xiyeceib 128 16 chains chain NNS cord-284409-xiyeceib 128 17 did do VBD cord-284409-xiyeceib 128 18 not not RB cord-284409-xiyeceib 128 19 have have VB cord-284409-xiyeceib 128 20 any any DT cord-284409-xiyeceib 128 21 characteristic characteristic JJ cord-284409-xiyeceib 128 22 residues residue NNS cord-284409-xiyeceib 128 23 as as IN cord-284409-xiyeceib 128 24 reported report VBN cord-284409-xiyeceib 128 25 previously previously RB cord-284409-xiyeceib 128 26 ( ( -LRB- cord-284409-xiyeceib 128 27 42 42 CD cord-284409-xiyeceib 128 28 ) ) -RRB- cord-284409-xiyeceib 128 29 . . . cord-284409-xiyeceib 129 1 However however RB cord-284409-xiyeceib 129 2 , , , cord-284409-xiyeceib 129 3 other other JJ cord-284409-xiyeceib 129 4 pre pre JJ cord-284409-xiyeceib 129 5 - - JJ cord-284409-xiyeceib 129 6 existing existing JJ cord-284409-xiyeceib 129 7 amino amino NN cord-284409-xiyeceib 129 8 acid acid NN cord-284409-xiyeceib 129 9 mutations mutation NNS cord-284409-xiyeceib 129 10 in in IN cord-284409-xiyeceib 129 11 light light JJ cord-284409-xiyeceib 129 12 chains chain NNS cord-284409-xiyeceib 129 13 could could MD cord-284409-xiyeceib 129 14 have have VB cord-284409-xiyeceib 129 15 implications implication NNS cord-284409-xiyeceib 129 16 for for IN cord-284409-xiyeceib 129 17 the the DT cord-284409-xiyeceib 129 18 VRC01-related VRC01-related NNP cord-284409-xiyeceib 129 19 intermediates intermediate NNS cord-284409-xiyeceib 129 20 with with IN cord-284409-xiyeceib 129 21 a a DT cord-284409-xiyeceib 129 22 characteristic characteristic JJ cord-284409-xiyeceib 129 23 CDRL3 cdrl3 NN cord-284409-xiyeceib 129 24 of of IN cord-284409-xiyeceib 129 25 five five CD cord-284409-xiyeceib 129 26 amino amino NN cord-284409-xiyeceib 129 27 acid acid NN cord-284409-xiyeceib 129 28 length length NN cord-284409-xiyeceib 129 29 . . . cord-284409-xiyeceib 130 1 We -PRON- PRP cord-284409-xiyeceib 130 2 analyzed analyze VBD cord-284409-xiyeceib 130 3 the the DT cord-284409-xiyeceib 130 4 amino amino NN cord-284409-xiyeceib 130 5 acid acid NN cord-284409-xiyeceib 130 6 length length NN cord-284409-xiyeceib 130 7 distributions distribution NNS cord-284409-xiyeceib 130 8 of of IN cord-284409-xiyeceib 130 9 CDRH3 cdrh3 NN cord-284409-xiyeceib 130 10 and and CC cord-284409-xiyeceib 130 11 CDRL3 cdrl3 NN cord-284409-xiyeceib 130 12 sequences sequence NNS cord-284409-xiyeceib 130 13 that that WDT cord-284409-xiyeceib 130 14 were be VBD cord-284409-xiyeceib 130 15 of of IN cord-284409-xiyeceib 130 16 VRC01 VRC01 NNP cord-284409-xiyeceib 130 17 origins origin NNS cord-284409-xiyeceib 130 18 , , , cord-284409-xiyeceib 130 19 namely namely RB cord-284409-xiyeceib 130 20 , , , cord-284409-xiyeceib 130 21 IGHV1 IGHV1 NNP cord-284409-xiyeceib 130 22 - - HYPH cord-284409-xiyeceib 130 23 2 2 CD cord-284409-xiyeceib 130 24 and and CC cord-284409-xiyeceib 130 25 IGKV3 igkv3 CD cord-284409-xiyeceib 130 26 - - HYPH cord-284409-xiyeceib 130 27 11 11 CD cord-284409-xiyeceib 130 28 for for IN cord-284409-xiyeceib 130 29 heavy heavy JJ cord-284409-xiyeceib 130 30 and and CC cord-284409-xiyeceib 130 31 light light JJ cord-284409-xiyeceib 130 32 chains chain NNS cord-284409-xiyeceib 130 33 , , , cord-284409-xiyeceib 130 34 respectively respectively RB cord-284409-xiyeceib 130 35 , , , cord-284409-xiyeceib 130 36 as as IN cord-284409-xiyeceib 130 37 derived derive VBN cord-284409-xiyeceib 130 38 from from IN cord-284409-xiyeceib 130 39 the the DT cord-284409-xiyeceib 130 40 human human JJ cord-284409-xiyeceib 130 41 cord cord NN cord-284409-xiyeceib 130 42 blood blood NNP cord-284409-xiyeceib 130 43 IgM IgM NNP cord-284409-xiyeceib 130 44 library library NNP cord-284409-xiyeceib 130 45 ( ( -LRB- cord-284409-xiyeceib 130 46 Figure Figure NNP cord-284409-xiyeceib 130 47 3 3 CD cord-284409-xiyeceib 130 48 ) ) -RRB- cord-284409-xiyeceib 130 49 . . . cord-284409-xiyeceib 131 1 The the DT cord-284409-xiyeceib 131 2 CDRH3 cdrh3 NN cord-284409-xiyeceib 131 3 lengths length NNS cord-284409-xiyeceib 131 4 ranged range VBD cord-284409-xiyeceib 131 5 from from IN cord-284409-xiyeceib 131 6 4 4 CD cord-284409-xiyeceib 131 7 to to TO cord-284409-xiyeceib 131 8 27 27 CD cord-284409-xiyeceib 131 9 amino amino JJ cord-284409-xiyeceib 131 10 acids acid NNS cord-284409-xiyeceib 131 11 , , , cord-284409-xiyeceib 131 12 indicating indicate VBG cord-284409-xiyeceib 131 13 high high JJ cord-284409-xiyeceib 131 14 CDR3 CDR3 NNP cord-284409-xiyeceib 131 15 length length NN cord-284409-xiyeceib 131 16 diversity diversity NN cord-284409-xiyeceib 131 17 ( ( -LRB- cord-284409-xiyeceib 131 18 Figure figure NN cord-284409-xiyeceib 131 19 3A 3a CD cord-284409-xiyeceib 131 20 ) ) -RRB- cord-284409-xiyeceib 131 21 . . . cord-284409-xiyeceib 132 1 VRC01 VRC01 NNP cord-284409-xiyeceib 132 2 has have VBZ cord-284409-xiyeceib 132 3 a a DT cord-284409-xiyeceib 132 4 CDRH3 cdrh3 NN cord-284409-xiyeceib 132 5 length length NN cord-284409-xiyeceib 132 6 of of IN cord-284409-xiyeceib 132 7 14 14 CD cord-284409-xiyeceib 132 8 amino amino JJ cord-284409-xiyeceib 132 9 acids acid NNS cord-284409-xiyeceib 132 10 , , , cord-284409-xiyeceib 132 11 which which WDT cord-284409-xiyeceib 132 12 is be VBZ cord-284409-xiyeceib 132 13 shorter short JJR cord-284409-xiyeceib 132 14 than than IN cord-284409-xiyeceib 132 15 those those DT cord-284409-xiyeceib 132 16 of of IN cord-284409-xiyeceib 132 17 most most JJS cord-284409-xiyeceib 132 18 other other JJ cord-284409-xiyeceib 132 19 anti anti JJ cord-284409-xiyeceib 132 20 - - JJ cord-284409-xiyeceib 132 21 HIV-1 hiv-1 JJ cord-284409-xiyeceib 132 22 antibodies antibody NNS cord-284409-xiyeceib 132 23 ( ( -LRB- cord-284409-xiyeceib 132 24 25 25 CD cord-284409-xiyeceib 132 25 ) ) -RRB- cord-284409-xiyeceib 132 26 . . . cord-284409-xiyeceib 133 1 The the DT cord-284409-xiyeceib 133 2 LCDR3 LCDR3 NNS cord-284409-xiyeceib 133 3 lengths length NNS cord-284409-xiyeceib 133 4 ranged range VBD cord-284409-xiyeceib 133 5 from from IN cord-284409-xiyeceib 133 6 4 4 CD cord-284409-xiyeceib 133 7 to to TO cord-284409-xiyeceib 133 8 14 14 CD cord-284409-xiyeceib 133 9 amino amino JJ cord-284409-xiyeceib 133 10 acids acid NNS cord-284409-xiyeceib 133 11 ( ( -LRB- cord-284409-xiyeceib 133 12 Figure figure NN cord-284409-xiyeceib 133 13 3B 3b CD cord-284409-xiyeceib 133 14 ) ) -RRB- cord-284409-xiyeceib 133 15 . . . cord-284409-xiyeceib 134 1 The the DT cord-284409-xiyeceib 134 2 CDRL3 cdrl3 NN cord-284409-xiyeceib 134 3 of of IN cord-284409-xiyeceib 134 4 VRC01 VRC01 NNP cord-284409-xiyeceib 134 5 has have VBZ cord-284409-xiyeceib 134 6 a a DT cord-284409-xiyeceib 134 7 characteristic characteristic JJ cord-284409-xiyeceib 134 8 length length NN cord-284409-xiyeceib 134 9 of of IN cord-284409-xiyeceib 134 10 five five CD cord-284409-xiyeceib 134 11 amino amino NN cord-284409-xiyeceib 134 12 acids acid NNS cord-284409-xiyeceib 134 13 with with IN cord-284409-xiyeceib 134 14 a a DT cord-284409-xiyeceib 134 15 mature mature JJ cord-284409-xiyeceib 134 16 genetic genetic JJ cord-284409-xiyeceib 134 17 signature signature NN cord-284409-xiyeceib 134 18 ( ( -LRB- cord-284409-xiyeceib 134 19 33 33 CD cord-284409-xiyeceib 134 20 ) ) -RRB- cord-284409-xiyeceib 134 21 . . . cord-284409-xiyeceib 135 1 Analysis analysis NN cord-284409-xiyeceib 135 2 of of IN cord-284409-xiyeceib 135 3 the the DT cord-284409-xiyeceib 135 4 human human JJ cord-284409-xiyeceib 135 5 cord cord NN cord-284409-xiyeceib 135 6 blood blood NN cord-284409-xiyeceib 135 7 IgM IgM NNP cord-284409-xiyeceib 135 8 repertoire repertoire NN cord-284409-xiyeceib 135 9 showed show VBD cord-284409-xiyeceib 135 10 only only RB cord-284409-xiyeceib 135 11 a a DT cord-284409-xiyeceib 135 12 fraction fraction NN cord-284409-xiyeceib 135 13 of of IN cord-284409-xiyeceib 135 14 such such JJ cord-284409-xiyeceib 135 15 light light JJ cord-284409-xiyeceib 135 16 chains chain NNS cord-284409-xiyeceib 135 17 with with IN cord-284409-xiyeceib 135 18 a a DT cord-284409-xiyeceib 135 19 shorter short JJR cord-284409-xiyeceib 135 20 length length NN cord-284409-xiyeceib 135 21 of of IN cord-284409-xiyeceib 135 22 five five CD cord-284409-xiyeceib 135 23 amino amino NN cord-284409-xiyeceib 135 24 acids acid NNS cord-284409-xiyeceib 135 25 ( ( -LRB- cord-284409-xiyeceib 135 26 Figure figure NN cord-284409-xiyeceib 135 27 3B 3b CD cord-284409-xiyeceib 135 28 ) ) -RRB- cord-284409-xiyeceib 135 29 respectively respectively RB cord-284409-xiyeceib 135 30 . . . cord-284409-xiyeceib 136 1 These these DT cord-284409-xiyeceib 136 2 plots plot NNS cord-284409-xiyeceib 136 3 show show VBP cord-284409-xiyeceib 136 4 that that IN cord-284409-xiyeceib 136 5 there there EX cord-284409-xiyeceib 136 6 are be VBP cord-284409-xiyeceib 136 7 position position NN cord-284409-xiyeceib 136 8 specific specific JJ cord-284409-xiyeceib 136 9 variations variation NNS cord-284409-xiyeceib 136 10 in in IN cord-284409-xiyeceib 136 11 the the DT cord-284409-xiyeceib 136 12 CDRH1 cdrh1 NN cord-284409-xiyeceib 136 13 and and CC cord-284409-xiyeceib 136 14 CDRH2 CDRH2 NNP cord-284409-xiyeceib 136 15 regions region NNS cord-284409-xiyeceib 136 16 of of IN cord-284409-xiyeceib 136 17 IGHV1 IGHV1 NNP cord-284409-xiyeceib 136 18 - - HYPH cord-284409-xiyeceib 136 19 2 2 CD cord-284409-xiyeceib 136 20 genes gene NNS cord-284409-xiyeceib 136 21 . . . cord-284409-xiyeceib 137 1 These these DT cord-284409-xiyeceib 137 2 could could MD cord-284409-xiyeceib 137 3 indicate indicate VB cord-284409-xiyeceib 137 4 possible possible JJ cord-284409-xiyeceib 137 5 IGHV1 ighv1 NN cord-284409-xiyeceib 137 6 - - HYPH cord-284409-xiyeceib 137 7 2 2 CD cord-284409-xiyeceib 137 8 specific specific JJ cord-284409-xiyeceib 137 9 pre pre JJ cord-284409-xiyeceib 137 10 - - JJ cord-284409-xiyeceib 137 11 existing existing JJ cord-284409-xiyeceib 137 12 amino amino NN cord-284409-xiyeceib 137 13 acid acid NN cord-284409-xiyeceib 137 14 mutations mutation NNS cord-284409-xiyeceib 137 15 in in IN cord-284409-xiyeceib 137 16 CDRH1 CDRH1 NNP cord-284409-xiyeceib 137 17 and and CC cord-284409-xiyeceib 137 18 CDRH2 CDRH2 NNP cord-284409-xiyeceib 137 19 , , , cord-284409-xiyeceib 137 20 as as IN cord-284409-xiyeceib 137 21 observed observe VBN cord-284409-xiyeceib 137 22 in in IN cord-284409-xiyeceib 137 23 several several JJ cord-284409-xiyeceib 137 24 naïve naïve JJ cord-284409-xiyeceib 137 25 antibody antibody NN cord-284409-xiyeceib 137 26 heavy heavy JJ cord-284409-xiyeceib 137 27 chain chain NN cord-284409-xiyeceib 137 28 sequences sequence NNS cord-284409-xiyeceib 137 29 , , , cord-284409-xiyeceib 137 30 which which WDT cord-284409-xiyeceib 137 31 could could MD cord-284409-xiyeceib 137 32 inform inform VB cord-284409-xiyeceib 137 33 the the DT cord-284409-xiyeceib 137 34 design design NN cord-284409-xiyeceib 137 35 of of IN cord-284409-xiyeceib 137 36 germline germline JJ cord-284409-xiyeceib 137 37 precursors precursor NNS cord-284409-xiyeceib 137 38 and and CC cord-284409-xiyeceib 137 39 intermediates intermediate NNS cord-284409-xiyeceib 137 40 of of IN cord-284409-xiyeceib 137 41 VRC01-like vrc01-like NN cord-284409-xiyeceib 137 42 antibodies antibody NNS cord-284409-xiyeceib 137 43 . . . cord-284409-xiyeceib 138 1 We -PRON- PRP cord-284409-xiyeceib 138 2 previously previously RB cord-284409-xiyeceib 138 3 observed observe VBD cord-284409-xiyeceib 138 4 that that IN cord-284409-xiyeceib 138 5 the the DT cord-284409-xiyeceib 138 6 V v NN cord-284409-xiyeceib 138 7 - - HYPH cord-284409-xiyeceib 138 8 D D NNP cord-284409-xiyeceib 138 9 - - HYPH cord-284409-xiyeceib 138 10 J J NNP cord-284409-xiyeceib 138 11 rearrangement rearrangement NN cord-284409-xiyeceib 138 12 patterns pattern NNS cord-284409-xiyeceib 138 13 occurred occur VBD cord-284409-xiyeceib 138 14 at at IN cord-284409-xiyeceib 138 15 different different JJ cord-284409-xiyeceib 138 16 frequencies frequency NNS cord-284409-xiyeceib 138 17 with with IN cord-284409-xiyeceib 138 18 1,430 1,430 CD cord-284409-xiyeceib 138 19 V v NN cord-284409-xiyeceib 138 20 - - HYPH cord-284409-xiyeceib 138 21 D D NNP cord-284409-xiyeceib 138 22 - - HYPH cord-284409-xiyeceib 138 23 J J NNP cord-284409-xiyeceib 138 24 combinations combination NNS cord-284409-xiyeceib 138 25 in in IN cord-284409-xiyeceib 138 26 a a DT cord-284409-xiyeceib 138 27 human human JJ cord-284409-xiyeceib 138 28 cord cord NN cord-284409-xiyeceib 138 29 blood blood NN cord-284409-xiyeceib 138 30 IgM IgM NNP cord-284409-xiyeceib 138 31 repertoire repertoire NN cord-284409-xiyeceib 138 32 ( ( -LRB- cord-284409-xiyeceib 138 33 19 19 CD cord-284409-xiyeceib 138 34 ) ) -RRB- cord-284409-xiyeceib 138 35 . . . cord-284409-xiyeceib 139 1 Figure figure NN cord-284409-xiyeceib 139 2 4A 4a CD cord-284409-xiyeceib 139 3 shows show VBZ cord-284409-xiyeceib 139 4 the the DT cord-284409-xiyeceib 139 5 V v NN cord-284409-xiyeceib 139 6 - - HYPH cord-284409-xiyeceib 139 7 D D NNP cord-284409-xiyeceib 139 8 - - HYPH cord-284409-xiyeceib 139 9 J J NNP cord-284409-xiyeceib 139 10 diversity diversity NN cord-284409-xiyeceib 139 11 associated associate VBN cord-284409-xiyeceib 139 12 with with IN cord-284409-xiyeceib 139 13 IGHV1 IGHV1 NNP cord-284409-xiyeceib 139 14 - - HYPH cord-284409-xiyeceib 139 15 2 2 CD cord-284409-xiyeceib 139 16 gene gene NN cord-284409-xiyeceib 139 17 sequences sequence NNS cord-284409-xiyeceib 139 18 using use VBG cord-284409-xiyeceib 139 19 a a DT cord-284409-xiyeceib 139 20 bubble bubble NN cord-284409-xiyeceib 139 21 plot plot NN cord-284409-xiyeceib 139 22 for for IN cord-284409-xiyeceib 139 23 comparison comparison NN cord-284409-xiyeceib 139 24 with with IN cord-284409-xiyeceib 139 25 different different JJ cord-284409-xiyeceib 139 26 D D NNP cord-284409-xiyeceib 139 27 and and CC cord-284409-xiyeceib 139 28 J J NNP cord-284409-xiyeceib 139 29 genes gene NNS cord-284409-xiyeceib 139 30 . . . cord-284409-xiyeceib 140 1 The the DT cord-284409-xiyeceib 140 2 VRC01 VRC01 NNP cord-284409-xiyeceib 140 3 heavy heavy JJ cord-284409-xiyeceib 140 4 chain chain NN cord-284409-xiyeceib 140 5 uses use VBZ cord-284409-xiyeceib 140 6 IGHD3 IGHD3 NNP cord-284409-xiyeceib 140 7 - - HYPH cord-284409-xiyeceib 140 8 16 16 CD cord-284409-xiyeceib 140 9 and and CC cord-284409-xiyeceib 140 10 IGHJ2 IGHJ2 NNP cord-284409-xiyeceib 140 11 genes gene NNS cord-284409-xiyeceib 140 12 to to TO cord-284409-xiyeceib 140 13 recombine recombine VB cord-284409-xiyeceib 140 14 with with IN cord-284409-xiyeceib 140 15 IGHV1 ighv1 NN cord-284409-xiyeceib 140 16 - - SYM cord-284409-xiyeceib 140 17 2 2 CD cord-284409-xiyeceib 140 18 . . . cord-284409-xiyeceib 141 1 However however RB cord-284409-xiyeceib 141 2 , , , cord-284409-xiyeceib 141 3 other other JJ cord-284409-xiyeceib 141 4 VRC01-related VRC01-related NNP cord-284409-xiyeceib 141 5 antibodies antibody NNS cord-284409-xiyeceib 141 6 exhibit exhibit VBP cord-284409-xiyeceib 141 7 a a DT cord-284409-xiyeceib 141 8 skewed skewed JJ cord-284409-xiyeceib 141 9 usage usage NN cord-284409-xiyeceib 141 10 of of IN cord-284409-xiyeceib 141 11 IGHJ IGHJ NNP cord-284409-xiyeceib 141 12 genes gene NNS cord-284409-xiyeceib 141 13 although although IN cord-284409-xiyeceib 141 14 at at RB cord-284409-xiyeceib 141 15 least least RBS cord-284409-xiyeceib 141 16 three three CD cord-284409-xiyeceib 141 17 different different JJ cord-284409-xiyeceib 141 18 IGHJ IGHJ NNP cord-284409-xiyeceib 141 19 genes gene NNS cord-284409-xiyeceib 141 20 ( ( -LRB- cord-284409-xiyeceib 141 21 IGHJ1 ighj1 UH cord-284409-xiyeceib 141 22 , , , cord-284409-xiyeceib 141 23 IGHJ2 ighj2 XX cord-284409-xiyeceib 141 24 , , , cord-284409-xiyeceib 141 25 and and CC cord-284409-xiyeceib 141 26 IGHJ4 ighj4 NN cord-284409-xiyeceib 141 27 ) ) -RRB- cord-284409-xiyeceib 141 28 are be VBP cord-284409-xiyeceib 141 29 involved involve VBN cord-284409-xiyeceib 141 30 ( ( -LRB- cord-284409-xiyeceib 141 31 23 23 CD cord-284409-xiyeceib 141 32 ) ) -RRB- cord-284409-xiyeceib 141 33 . . . cord-284409-xiyeceib 142 1 As as IN cord-284409-xiyeceib 142 2 the the DT cord-284409-xiyeceib 142 3 human human JJ cord-284409-xiyeceib 142 4 cord cord NN cord-284409-xiyeceib 142 5 blood blood NNP cord-284409-xiyeceib 142 6 IgM IgM NNP cord-284409-xiyeceib 142 7 library library NNP cord-284409-xiyeceib 142 8 has have VBZ cord-284409-xiyeceib 142 9 a a DT cord-284409-xiyeceib 142 10 large large JJ cord-284409-xiyeceib 142 11 functional functional JJ cord-284409-xiyeceib 142 12 V v NN cord-284409-xiyeceib 142 13 - - HYPH cord-284409-xiyeceib 142 14 D D NNP cord-284409-xiyeceib 142 15 - - HYPH cord-284409-xiyeceib 142 16 J J NNP cord-284409-xiyeceib 142 17 diversity diversity NN cord-284409-xiyeceib 142 18 , , , cord-284409-xiyeceib 142 19 it -PRON- PRP cord-284409-xiyeceib 142 20 can can MD cord-284409-xiyeceib 142 21 be be VB cord-284409-xiyeceib 142 22 used use VBN cord-284409-xiyeceib 142 23 to to TO cord-284409-xiyeceib 142 24 identify identify VB cord-284409-xiyeceib 142 25 potential potential JJ cord-284409-xiyeceib 142 26 VRC01-like VRC01-like `` cord-284409-xiyeceib 142 27 heavy heavy JJ cord-284409-xiyeceib 142 28 chain chain NN cord-284409-xiyeceib 142 29 germline germline NN cord-284409-xiyeceib 142 30 precursors precursor NNS cord-284409-xiyeceib 142 31 and and CC cord-284409-xiyeceib 142 32 intermediates intermediate NNS cord-284409-xiyeceib 142 33 . . . cord-284409-xiyeceib 143 1 In in IN cord-284409-xiyeceib 143 2 jawed jawed JJ cord-284409-xiyeceib 143 3 vertebrates vertebrate NNS cord-284409-xiyeceib 143 4 the the DT cord-284409-xiyeceib 143 5 expressed express VBN cord-284409-xiyeceib 143 6 heavy heavy JJ cord-284409-xiyeceib 143 7 chains chain NNS cord-284409-xiyeceib 143 8 may may MD cord-284409-xiyeceib 143 9 use use VB cord-284409-xiyeceib 143 10 any any DT cord-284409-xiyeceib 143 11 of of IN cord-284409-xiyeceib 143 12 the the DT cord-284409-xiyeceib 143 13 six six CD cord-284409-xiyeceib 143 14 IGHD IGHD NNP cord-284409-xiyeceib 143 15 reading read VBG cord-284409-xiyeceib 143 16 frames frame NNS cord-284409-xiyeceib 143 17 ( ( -LRB- cord-284409-xiyeceib 143 18 RFs RFs NNP cord-284409-xiyeceib 143 19 ) ) -RRB- cord-284409-xiyeceib 143 20 ; ; : cord-284409-xiyeceib 143 21 however however RB cord-284409-xiyeceib 143 22 , , , cord-284409-xiyeceib 143 23 RF1 RF1 NNP cord-284409-xiyeceib 143 24 is be VBZ cord-284409-xiyeceib 143 25 thought think VBN cord-284409-xiyeceib 143 26 to to TO cord-284409-xiyeceib 143 27 be be VB cord-284409-xiyeceib 143 28 the the DT cord-284409-xiyeceib 143 29 preferred preferred JJ cord-284409-xiyeceib 143 30 one one NN cord-284409-xiyeceib 143 31 as as IN cord-284409-xiyeceib 143 32 it -PRON- PRP cord-284409-xiyeceib 143 33 mostly mostly RB cord-284409-xiyeceib 143 34 encodes encode VBZ cord-284409-xiyeceib 143 35 tyrosine tyrosine NN cord-284409-xiyeceib 143 36 and and CC cord-284409-xiyeceib 143 37 glycine glycine NN cord-284409-xiyeceib 143 38 . . . cord-284409-xiyeceib 144 1 The the DT cord-284409-xiyeceib 144 2 remaining remain VBG cord-284409-xiyeceib 144 3 five five CD cord-284409-xiyeceib 144 4 RFs rf NNS cord-284409-xiyeceib 144 5 encode encode VB cord-284409-xiyeceib 144 6 either either CC cord-284409-xiyeceib 144 7 hydrophobic hydrophobic JJ cord-284409-xiyeceib 144 8 or or CC cord-284409-xiyeceib 144 9 charged charge VBN cord-284409-xiyeceib 144 10 amino amino NN cord-284409-xiyeceib 144 11 acids acid NNS cord-284409-xiyeceib 144 12 , , , cord-284409-xiyeceib 144 13 but but CC cord-284409-xiyeceib 144 14 the the DT cord-284409-xiyeceib 144 15 use use NN cord-284409-xiyeceib 144 16 of of IN cord-284409-xiyeceib 144 17 inverted inverted JJ cord-284409-xiyeceib 144 18 RF1 rf1 NN cord-284409-xiyeceib 144 19 , , , cord-284409-xiyeceib 144 20 RF2 RF2 NNP cord-284409-xiyeceib 144 21 , , , cord-284409-xiyeceib 144 22 and and CC cord-284409-xiyeceib 144 23 RF3 rf3 NN cord-284409-xiyeceib 144 24 are be VBP cord-284409-xiyeceib 144 25 discouraged discouraged JJ cord-284409-xiyeceib 144 26 . . . cord-284409-xiyeceib 145 1 Preferential preferential JJ cord-284409-xiyeceib 145 2 usage usage NN cord-284409-xiyeceib 145 3 of of IN cord-284409-xiyeceib 145 4 IGHD IGHD NNP cord-284409-xiyeceib 145 5 RFs RFs NNP cord-284409-xiyeceib 145 6 has have VBZ cord-284409-xiyeceib 145 7 been be VBN cord-284409-xiyeceib 145 8 long long RB cord-284409-xiyeceib 145 9 implicated implicate VBN cord-284409-xiyeceib 145 10 in in IN cord-284409-xiyeceib 145 11 B b NN cord-284409-xiyeceib 145 12 cell cell NN cord-284409-xiyeceib 145 13 development development NN cord-284409-xiyeceib 145 14 and and CC cord-284409-xiyeceib 145 15 antigen antigen NN cord-284409-xiyeceib 145 16 - - HYPH cord-284409-xiyeceib 145 17 specific specific JJ cord-284409-xiyeceib 145 18 antibody antibody NN cord-284409-xiyeceib 145 19 production production NN cord-284409-xiyeceib 145 20 ( ( -LRB- cord-284409-xiyeceib 145 21 43 43 CD cord-284409-xiyeceib 145 22 ) ) -RRB- cord-284409-xiyeceib 145 23 ( ( -LRB- cord-284409-xiyeceib 145 24 44 44 CD cord-284409-xiyeceib 145 25 ) ) -RRB- cord-284409-xiyeceib 145 26 ( ( -LRB- cord-284409-xiyeceib 145 27 45 45 CD cord-284409-xiyeceib 145 28 ) ) -RRB- cord-284409-xiyeceib 145 29 , , , cord-284409-xiyeceib 145 30 and and CC cord-284409-xiyeceib 145 31 selected select VBN cord-284409-xiyeceib 145 32 based base VBN cord-284409-xiyeceib 145 33 upon upon IN cord-284409-xiyeceib 145 34 its -PRON- PRP$ cord-284409-xiyeceib 145 35 amino amino NN cord-284409-xiyeceib 145 36 acid acid NN cord-284409-xiyeceib 145 37 content content NN cord-284409-xiyeceib 145 38 ( ( -LRB- cord-284409-xiyeceib 145 39 46 46 CD cord-284409-xiyeceib 145 40 ) ) -RRB- cord-284409-xiyeceib 145 41 . . . cord-284409-xiyeceib 146 1 Genetic genetic JJ cord-284409-xiyeceib 146 2 control control NN cord-284409-xiyeceib 146 3 of of IN cord-284409-xiyeceib 146 4 IGDH IGDH NNP cord-284409-xiyeceib 146 5 RF RF NNP cord-284409-xiyeceib 146 6 preference preference NN cord-284409-xiyeceib 146 7 over over IN cord-284409-xiyeceib 146 8 the the DT cord-284409-xiyeceib 146 9 regulation regulation NN cord-284409-xiyeceib 146 10 of of IN cord-284409-xiyeceib 146 11 repertoire repertoire NN cord-284409-xiyeceib 146 12 development development NN cord-284409-xiyeceib 146 13 has have VBZ cord-284409-xiyeceib 146 14 been be VBN cord-284409-xiyeceib 146 15 recognized recognize VBN cord-284409-xiyeceib 146 16 ( ( -LRB- cord-284409-xiyeceib 146 17 47 47 CD cord-284409-xiyeceib 146 18 ) ) -RRB- cord-284409-xiyeceib 146 19 . . . cord-284409-xiyeceib 147 1 Here here RB cord-284409-xiyeceib 147 2 , , , cord-284409-xiyeceib 147 3 we -PRON- PRP cord-284409-xiyeceib 147 4 have have VBP cord-284409-xiyeceib 147 5 analyzed analyze VBN cord-284409-xiyeceib 147 6 the the DT cord-284409-xiyeceib 147 7 productive productive JJ cord-284409-xiyeceib 147 8 IGHD IGHD NNP cord-284409-xiyeceib 147 9 RF rf NN cord-284409-xiyeceib 147 10 usages usage NNS cord-284409-xiyeceib 147 11 in in IN cord-284409-xiyeceib 147 12 a a DT cord-284409-xiyeceib 147 13 human human JJ cord-284409-xiyeceib 147 14 cord cord NN cord-284409-xiyeceib 147 15 blood blood NN cord-284409-xiyeceib 147 16 IgM IgM NNP cord-284409-xiyeceib 147 17 library library NNP cord-284409-xiyeceib 147 18 . . . cord-284409-xiyeceib 148 1 Frequency frequency NN cord-284409-xiyeceib 148 2 distribution distribution NN cord-284409-xiyeceib 148 3 of of IN cord-284409-xiyeceib 148 4 RFs rf NNS cord-284409-xiyeceib 148 5 is be VBZ cord-284409-xiyeceib 148 6 plotted plot VBN cord-284409-xiyeceib 148 7 using use VBG cord-284409-xiyeceib 148 8 a a DT cord-284409-xiyeceib 148 9 pie pie NN cord-284409-xiyeceib 148 10 chart chart NN cord-284409-xiyeceib 148 11 as as IN cord-284409-xiyeceib 148 12 depicted depict VBN cord-284409-xiyeceib 148 13 in in IN cord-284409-xiyeceib 148 14 Figure figure NN cord-284409-xiyeceib 148 15 4B 4b NN cord-284409-xiyeceib 148 16 . . . cord-284409-xiyeceib 149 1 We -PRON- PRP cord-284409-xiyeceib 149 2 noted note VBD cord-284409-xiyeceib 149 3 that that IN cord-284409-xiyeceib 149 4 there there EX cord-284409-xiyeceib 149 5 were be VBD cord-284409-xiyeceib 149 6 not not RB cord-284409-xiyeceib 149 7 any any DT cord-284409-xiyeceib 149 8 highly highly RB cord-284409-xiyeceib 149 9 restricted restrict VBN cord-284409-xiyeceib 149 10 usages usage NNS cord-284409-xiyeceib 149 11 of of IN cord-284409-xiyeceib 149 12 the the DT cord-284409-xiyeceib 149 13 IGHD IGHD NNP cord-284409-xiyeceib 149 14 RFs RFs NNPS cord-284409-xiyeceib 149 15 although although IN cord-284409-xiyeceib 149 16 some some DT cord-284409-xiyeceib 149 17 preferential preferential JJ cord-284409-xiyeceib 149 18 usages usage NNS cord-284409-xiyeceib 149 19 depending depend VBG cord-284409-xiyeceib 149 20 on on IN cord-284409-xiyeceib 149 21 the the DT cord-284409-xiyeceib 149 22 IGHD IGHD NNP cord-284409-xiyeceib 149 23 genes gene NNS cord-284409-xiyeceib 149 24 were be VBD cord-284409-xiyeceib 149 25 found find VBN cord-284409-xiyeceib 149 26 . . . cord-284409-xiyeceib 150 1 This this DT cord-284409-xiyeceib 150 2 clearly clearly RB cord-284409-xiyeceib 150 3 indicates indicate VBZ cord-284409-xiyeceib 150 4 that that IN cord-284409-xiyeceib 150 5 IGHD IGHD NNP cord-284409-xiyeceib 150 6 RFs RFs NNP cord-284409-xiyeceib 150 7 diversity diversity NN cord-284409-xiyeceib 150 8 could could MD cord-284409-xiyeceib 150 9 add add VB cord-284409-xiyeceib 150 10 more more RBR cord-284409-xiyeceib 150 11 diverse diverse JJ cord-284409-xiyeceib 150 12 amino amino NN cord-284409-xiyeceib 150 13 acid acid NN cord-284409-xiyeceib 150 14 contents content NNS cord-284409-xiyeceib 150 15 leading lead VBG cord-284409-xiyeceib 150 16 to to IN cord-284409-xiyeceib 150 17 enormous enormous JJ cord-284409-xiyeceib 150 18 CDRH3 cdrh3 NN cord-284409-xiyeceib 150 19 diversity diversity NN cord-284409-xiyeceib 150 20 . . . cord-284409-xiyeceib 151 1 It -PRON- PRP cord-284409-xiyeceib 151 2 may may MD cord-284409-xiyeceib 151 3 also also RB cord-284409-xiyeceib 151 4 be be VB cord-284409-xiyeceib 151 5 possible possible JJ cord-284409-xiyeceib 151 6 that that IN cord-284409-xiyeceib 151 7 intermediates intermediate NNS cord-284409-xiyeceib 151 8 with with IN cord-284409-xiyeceib 151 9 different different JJ cord-284409-xiyeceib 151 10 RF rf NN cord-284409-xiyeceib 151 11 choices choice NNS cord-284409-xiyeceib 151 12 play play VBP cord-284409-xiyeceib 151 13 a a DT cord-284409-xiyeceib 151 14 critical critical JJ cord-284409-xiyeceib 151 15 role role NN cord-284409-xiyeceib 151 16 in in IN cord-284409-xiyeceib 151 17 selecting select VBG cord-284409-xiyeceib 151 18 certain certain JJ cord-284409-xiyeceib 151 19 maturation maturation NN cord-284409-xiyeceib 151 20 pathways pathway NNS cord-284409-xiyeceib 151 21 efficiently efficiently RB cord-284409-xiyeceib 151 22 . . . cord-284409-xiyeceib 152 1 The the DT cord-284409-xiyeceib 152 2 antibody antibody NN cord-284409-xiyeceib 152 3 germline germline NN cord-284409-xiyeceib 152 4 / / SYM cord-284409-xiyeceib 152 5 maturation maturation NN cord-284409-xiyeceib 152 6 hypothesis hypothesis NN cord-284409-xiyeceib 152 7 led lead VBD cord-284409-xiyeceib 152 8 to to IN cord-284409-xiyeceib 152 9 a a DT cord-284409-xiyeceib 152 10 paradigm paradigm NN cord-284409-xiyeceib 152 11 shift shift NN cord-284409-xiyeceib 152 12 in in IN cord-284409-xiyeceib 152 13 the the DT cord-284409-xiyeceib 152 14 design design NN cord-284409-xiyeceib 152 15 of of IN cord-284409-xiyeceib 152 16 immunogens immunogen NNS cord-284409-xiyeceib 152 17 for for IN cord-284409-xiyeceib 152 18 bnAb bnab CD cord-284409-xiyeceib 152 19 elicitation elicitation NN cord-284409-xiyeceib 152 20 , , , cord-284409-xiyeceib 152 21 as as RB cord-284409-xiyeceib 152 22 well well RB cord-284409-xiyeceib 152 23 as as IN cord-284409-xiyeceib 152 24 the the DT cord-284409-xiyeceib 152 25 realization realization NN cord-284409-xiyeceib 152 26 of of IN cord-284409-xiyeceib 152 27 the the DT cord-284409-xiyeceib 152 28 importance importance NN cord-284409-xiyeceib 152 29 of of IN cord-284409-xiyeceib 152 30 the the DT cord-284409-xiyeceib 152 31 complexity complexity NN cord-284409-xiyeceib 152 32 of of IN cord-284409-xiyeceib 152 33 the the DT cord-284409-xiyeceib 152 34 bnAb bnab CD cord-284409-xiyeceib 152 35 maturation maturation NN cord-284409-xiyeceib 152 36 pathways pathway NNS cord-284409-xiyeceib 152 37 , , , cord-284409-xiyeceib 152 38 and and CC cord-284409-xiyeceib 152 39 exploration exploration NN cord-284409-xiyeceib 152 40 of of IN cord-284409-xiyeceib 152 41 human human JJ cord-284409-xiyeceib 152 42 antibodyomes antibodyome NNS cord-284409-xiyeceib 152 43 ( ( -LRB- cord-284409-xiyeceib 152 44 14 14 CD cord-284409-xiyeceib 152 45 ) ) -RRB- cord-284409-xiyeceib 152 46 . . . cord-284409-xiyeceib 153 1 In in IN cord-284409-xiyeceib 153 2 fact fact NN cord-284409-xiyeceib 153 3 , , , cord-284409-xiyeceib 153 4 human human JJ cord-284409-xiyeceib 153 5 antibodyome antibodyome NN cord-284409-xiyeceib 153 6 exploration exploration NN cord-284409-xiyeceib 153 7 is be VBZ cord-284409-xiyeceib 153 8 also also RB cord-284409-xiyeceib 153 9 promising promise VBG cord-284409-xiyeceib 153 10 for for IN cord-284409-xiyeceib 153 11 other other JJ cord-284409-xiyeceib 153 12 fields field NNS cord-284409-xiyeceib 153 13 of of IN cord-284409-xiyeceib 153 14 science science NN cord-284409-xiyeceib 153 15 and and CC cord-284409-xiyeceib 153 16 medicine medicine NN cord-284409-xiyeceib 153 17 ( ( -LRB- cord-284409-xiyeceib 153 18 14 14 CD cord-284409-xiyeceib 153 19 , , , cord-284409-xiyeceib 153 20 48 48 CD cord-284409-xiyeceib 153 21 ) ) -RRB- cord-284409-xiyeceib 153 22 . . . cord-284409-xiyeceib 154 1 This this DT cord-284409-xiyeceib 154 2 antibodyome antibodyome NN cord-284409-xiyeceib 154 3 approach approach NN cord-284409-xiyeceib 154 4 is be VBZ cord-284409-xiyeceib 154 5 now now RB cord-284409-xiyeceib 154 6 a a DT cord-284409-xiyeceib 154 7 major major JJ cord-284409-xiyeceib 154 8 direction direction NN cord-284409-xiyeceib 154 9 of of IN cord-284409-xiyeceib 154 10 research research NN cord-284409-xiyeceib 154 11 in in IN cord-284409-xiyeceib 154 12 the the DT cord-284409-xiyeceib 154 13 HIV-1 HIV-1 NNP cord-284409-xiyeceib 154 14 vaccine vaccine NN cord-284409-xiyeceib 154 15 field field NN cord-284409-xiyeceib 154 16 ( ( -LRB- cord-284409-xiyeceib 154 17 16 16 CD cord-284409-xiyeceib 154 18 , , , cord-284409-xiyeceib 154 19 49 49 CD cord-284409-xiyeceib 154 20 ) ) -RRB- cord-284409-xiyeceib 154 21 . . . cord-284409-xiyeceib 155 1 An an DT cord-284409-xiyeceib 155 2 important important JJ cord-284409-xiyeceib 155 3 goal goal NN cord-284409-xiyeceib 155 4 is be VBZ cord-284409-xiyeceib 155 5 to to TO cord-284409-xiyeceib 155 6 precisely precisely RB cord-284409-xiyeceib 155 7 identify identify VB cord-284409-xiyeceib 155 8 naturally naturally RB cord-284409-xiyeceib 155 9 occurring occur VBG cord-284409-xiyeceib 155 10 germline germline NN cord-284409-xiyeceib 155 11 - - HYPH cord-284409-xiyeceib 155 12 like like JJ cord-284409-xiyeceib 155 13 precursors precursor NNS cord-284409-xiyeceib 155 14 and and CC cord-284409-xiyeceib 155 15 intermediates intermediate NNS cord-284409-xiyeceib 155 16 of of IN cord-284409-xiyeceib 155 17 bnAbs bnAbs NNP cord-284409-xiyeceib 155 18 that that WDT cord-284409-xiyeceib 155 19 could could MD cord-284409-xiyeceib 155 20 help help VB cord-284409-xiyeceib 155 21 designing design VBG cord-284409-xiyeceib 155 22 novel novel JJ cord-284409-xiyeceib 155 23 immunogens immunogen NNS cord-284409-xiyeceib 155 24 , , , cord-284409-xiyeceib 155 25 which which WDT cord-284409-xiyeceib 155 26 could could MD cord-284409-xiyeceib 155 27 activate activate VB cord-284409-xiyeceib 155 28 the the DT cord-284409-xiyeceib 155 29 corresponding correspond VBG cord-284409-xiyeceib 155 30 BCRs bcr NNS cord-284409-xiyeceib 155 31 and and CC cord-284409-xiyeceib 155 32 drive drive VB cord-284409-xiyeceib 155 33 the the DT cord-284409-xiyeceib 155 34 immune immune JJ cord-284409-xiyeceib 155 35 system system NN cord-284409-xiyeceib 155 36 to to TO cord-284409-xiyeceib 155 37 produce produce VB cord-284409-xiyeceib 155 38 bnAbs bnabs NN cord-284409-xiyeceib 155 39 within within IN cord-284409-xiyeceib 155 40 a a DT cord-284409-xiyeceib 155 41 short short JJ cord-284409-xiyeceib 155 42 period period NN cord-284409-xiyeceib 155 43 of of IN cord-284409-xiyeceib 155 44 time time NN cord-284409-xiyeceib 155 45 . . . cord-284409-xiyeceib 156 1 We -PRON- PRP cord-284409-xiyeceib 156 2 presented present VBD cord-284409-xiyeceib 156 3 an an DT cord-284409-xiyeceib 156 4 approach approach NN cord-284409-xiyeceib 156 5 using use VBG cord-284409-xiyeceib 156 6 a a DT cord-284409-xiyeceib 156 7 human human JJ cord-284409-xiyeceib 156 8 cord cord NN cord-284409-xiyeceib 156 9 blood blood NN cord-284409-xiyeceib 156 10 IgM IgM NNP cord-284409-xiyeceib 156 11 library library NNP cord-284409-xiyeceib 156 12 to to TO cord-284409-xiyeceib 156 13 identify identify VB cord-284409-xiyeceib 156 14 putative putative JJ cord-284409-xiyeceib 156 15 germline germline JJ cord-284409-xiyeceib 156 16 precursors precursor NNS cord-284409-xiyeceib 156 17 and and CC cord-284409-xiyeceib 156 18 intermediates intermediate NNS cord-284409-xiyeceib 156 19 of of IN cord-284409-xiyeceib 156 20 VRC01-like vrc01-like UH cord-284409-xiyeceib 156 21 heavy heavy JJ cord-284409-xiyeceib 156 22 and and CC cord-284409-xiyeceib 156 23 light light JJ cord-284409-xiyeceib 156 24 chains chain NNS cord-284409-xiyeceib 156 25 , , , cord-284409-xiyeceib 156 26 which which WDT cord-284409-xiyeceib 156 27 could could MD cord-284409-xiyeceib 156 28 be be VB cord-284409-xiyeceib 156 29 useful useful JJ cord-284409-xiyeceib 156 30 in in IN cord-284409-xiyeceib 156 31 reconstructing reconstruct VBG cord-284409-xiyeceib 156 32 the the DT cord-284409-xiyeceib 156 33 B b NN cord-284409-xiyeceib 156 34 cell cell NN cord-284409-xiyeceib 156 35 clonal clonal JJ cord-284409-xiyeceib 156 36 lineages lineage NNS cord-284409-xiyeceib 156 37 in in IN cord-284409-xiyeceib 156 38 the the DT cord-284409-xiyeceib 156 39 maturation maturation NN cord-284409-xiyeceib 156 40 pathways pathway NNS cord-284409-xiyeceib 156 41 of of IN cord-284409-xiyeceib 156 42 VRC01-related VRC01-related NNP cord-284409-xiyeceib 156 43 bnAbs bnAbs NNP cord-284409-xiyeceib 156 44 . . . cord-284409-xiyeceib 157 1 This this DT cord-284409-xiyeceib 157 2 method method NN cord-284409-xiyeceib 157 3 has have VBZ cord-284409-xiyeceib 157 4 the the DT cord-284409-xiyeceib 157 5 potential potential NN cord-284409-xiyeceib 157 6 to to TO cord-284409-xiyeceib 157 7 help help VB cord-284409-xiyeceib 157 8 in in IN cord-284409-xiyeceib 157 9 the the DT cord-284409-xiyeceib 157 10 identification identification NN cord-284409-xiyeceib 157 11 of of IN cord-284409-xiyeceib 157 12 naturally naturally RB cord-284409-xiyeceib 157 13 occurring occur VBG cord-284409-xiyeceib 157 14 germline germline NN cord-284409-xiyeceib 157 15 - - HYPH cord-284409-xiyeceib 157 16 like like JJ cord-284409-xiyeceib 157 17 precursors precursor NNS cord-284409-xiyeceib 157 18 and and CC cord-284409-xiyeceib 157 19 intermediates intermediate NNS cord-284409-xiyeceib 157 20 of of IN cord-284409-xiyeceib 157 21 any any DT cord-284409-xiyeceib 157 22 known know VBN cord-284409-xiyeceib 157 23 bnAb bnAb '' cord-284409-xiyeceib 157 24 and and CC cord-284409-xiyeceib 157 25 in in IN cord-284409-xiyeceib 157 26 the the DT cord-284409-xiyeceib 157 27 development development NN cord-284409-xiyeceib 157 28 immunogens immunogen NNS cord-284409-xiyeceib 157 29 based base VBN cord-284409-xiyeceib 157 30 on on IN cord-284409-xiyeceib 157 31 HIV-1 HIV-1 NNP cord-284409-xiyeceib 157 32 Envs Envs NNP cord-284409-xiyeceib 157 33 ( ( -LRB- cord-284409-xiyeceib 157 34 50 50 CD cord-284409-xiyeceib 157 35 ) ) -RRB- cord-284409-xiyeceib 157 36 and and CC cord-284409-xiyeceib 157 37 peptides peptide NNS cord-284409-xiyeceib 157 38 ( ( -LRB- cord-284409-xiyeceib 157 39 51 51 CD cord-284409-xiyeceib 157 40 ) ) -RRB- cord-284409-xiyeceib 157 41 , , , cord-284409-xiyeceib 157 42 as as RB cord-284409-xiyeceib 157 43 well well RB cord-284409-xiyeceib 157 44 as as IN cord-284409-xiyeceib 157 45 non non JJ cord-284409-xiyeceib 157 46 - - JJ cord-284409-xiyeceib 157 47 HIV-1 hiv-1 JJ cord-284409-xiyeceib 157 48 molecules molecule NNS cord-284409-xiyeceib 157 49 ( ( -LRB- cord-284409-xiyeceib 157 50 12 12 CD cord-284409-xiyeceib 157 51 ) ) -RRB- cord-284409-xiyeceib 157 52 . . . cord-284409-xiyeceib 158 1 However however RB cord-284409-xiyeceib 158 2 , , , cord-284409-xiyeceib 158 3 major major JJ cord-284409-xiyeceib 158 4 challenges challenge NNS cord-284409-xiyeceib 158 5 remain remain VBP cord-284409-xiyeceib 158 6 and and CC cord-284409-xiyeceib 158 7 new new JJ cord-284409-xiyeceib 158 8 paradigms paradigm NNS cord-284409-xiyeceib 158 9 that that WDT cord-284409-xiyeceib 158 10 better well RBR cord-284409-xiyeceib 158 11 fit fit VBP cord-284409-xiyeceib 158 12 our -PRON- PRP$ cord-284409-xiyeceib 158 13 increased increased JJ cord-284409-xiyeceib 158 14 knowledge knowledge NN cord-284409-xiyeceib 158 15 of of IN cord-284409-xiyeceib 158 16 HIV HIV NNP cord-284409-xiyeceib 158 17 immunopathology immunopathology NN cord-284409-xiyeceib 158 18 could could MD cord-284409-xiyeceib 158 19 possibly possibly RB cord-284409-xiyeceib 158 20 be be VB cord-284409-xiyeceib 158 21 more more RBR cord-284409-xiyeceib 158 22 helpful helpful JJ cord-284409-xiyeceib 158 23 in in IN cord-284409-xiyeceib 158 24 guiding guide VBG cord-284409-xiyeceib 158 25 future future JJ cord-284409-xiyeceib 158 26 vaccine vaccine NN cord-284409-xiyeceib 158 27 research research NN cord-284409-xiyeceib 158 28 than than IN cord-284409-xiyeceib 158 29 did do VBD cord-284409-xiyeceib 158 30 past past JJ cord-284409-xiyeceib 158 31 unsuccessful unsuccessful JJ cord-284409-xiyeceib 158 32 approaches approach NNS cord-284409-xiyeceib 158 33 ( ( -LRB- cord-284409-xiyeceib 158 34 17 17 CD cord-284409-xiyeceib 158 35 ) ) -RRB- cord-284409-xiyeceib 158 36 . . . cord-284409-xiyeceib 159 1 We -PRON- PRP cord-284409-xiyeceib 159 2 thank thank VBP cord-284409-xiyeceib 159 3 the the DT cord-284409-xiyeceib 159 4 Laboratory Laboratory NNP cord-284409-xiyeceib 159 5 of of IN cord-284409-xiyeceib 159 6 Molecular Molecular NNP cord-284409-xiyeceib 159 7 Technology Technology NNP cord-284409-xiyeceib 159 8 of of IN cord-284409-xiyeceib 159 9 SAIC SAIC NNP cord-284409-xiyeceib 159 10 - - HYPH cord-284409-xiyeceib 159 11 Frederick Frederick NNP cord-284409-xiyeceib 159 12 , , , cord-284409-xiyeceib 159 13 Inc. Inc. NNP cord-284409-xiyeceib 159 14 , , , cord-284409-xiyeceib 159 15 for for IN cord-284409-xiyeceib 159 16 providing provide VBG cord-284409-xiyeceib 159 17 Roche Roche NNP cord-284409-xiyeceib 159 18 454 454 CD cord-284409-xiyeceib 159 19 sequencing sequencing NN cord-284409-xiyeceib 159 20 service service NN cord-284409-xiyeceib 159 21 . . . cord-284409-xiyeceib 160 1 We -PRON- PRP cord-284409-xiyeceib 160 2 thank thank VBP cord-284409-xiyeceib 160 3 Tina Tina NNP cord-284409-xiyeceib 160 4 Ju Ju NNP cord-284409-xiyeceib 160 5 for for IN cord-284409-xiyeceib 160 6 critically critically RB cord-284409-xiyeceib 160 7 reading read VBG cord-284409-xiyeceib 160 8 the the DT cord-284409-xiyeceib 160 9 manuscript manuscript NN cord-284409-xiyeceib 160 10 . . . cord-284409-xiyeceib 161 1 This this DT cord-284409-xiyeceib 161 2 research research NN cord-284409-xiyeceib 161 3 was be VBD cord-284409-xiyeceib 161 4 supported support VBN cord-284409-xiyeceib 161 5 by by IN cord-284409-xiyeceib 161 6 the the DT cord-284409-xiyeceib 161 7 Intramural Intramural NNP cord-284409-xiyeceib 161 8 Research Research NNP cord-284409-xiyeceib 161 9 Program Program NNP cord-284409-xiyeceib 161 10 of of IN cord-284409-xiyeceib 161 11 the the DT cord-284409-xiyeceib 161 12 NIH NIH NNP cord-284409-xiyeceib 161 13 , , , cord-284409-xiyeceib 161 14 National National NNP cord-284409-xiyeceib 161 15 Cancer Cancer NNP cord-284409-xiyeceib 161 16 Institute Institute NNP cord-284409-xiyeceib 161 17 , , , cord-284409-xiyeceib 161 18 Center Center NNP cord-284409-xiyeceib 161 19 for for IN cord-284409-xiyeceib 161 20 Cancer Cancer NNP cord-284409-xiyeceib 161 21 Research Research NNP cord-284409-xiyeceib 161 22 , , , cord-284409-xiyeceib 161 23 the the DT cord-284409-xiyeceib 161 24 Intramural Intramural NNP cord-284409-xiyeceib 161 25 AIDS AIDS NNP cord-284409-xiyeceib 161 26 Targeted Targeted NNP cord-284409-xiyeceib 161 27 Antiviral Antiviral NNP cord-284409-xiyeceib 161 28 Program Program NNP cord-284409-xiyeceib 161 29 ( ( -LRB- cord-284409-xiyeceib 161 30 IATAP IATAP NNP cord-284409-xiyeceib 161 31 ) ) -RRB- cord-284409-xiyeceib 161 32 of of IN cord-284409-xiyeceib 161 33 the the DT cord-284409-xiyeceib 161 34 NIH NIH NNP cord-284409-xiyeceib 161 35 and and CC cord-284409-xiyeceib 161 36 by by IN cord-284409-xiyeceib 161 37 Federal Federal NNP cord-284409-xiyeceib 161 38 funds fund NNS cord-284409-xiyeceib 161 39 from from IN cord-284409-xiyeceib 161 40 the the DT cord-284409-xiyeceib 161 41 NIH NIH NNP cord-284409-xiyeceib 161 42 , , , cord-284409-xiyeceib 161 43 National National NNP cord-284409-xiyeceib 161 44 Cancer Cancer NNP cord-284409-xiyeceib 161 45 Institute Institute NNP cord-284409-xiyeceib 161 46 , , , cord-284409-xiyeceib 161 47 under under IN cord-284409-xiyeceib 161 48 Contract Contract NNP cord-284409-xiyeceib 161 49 Nos Nos NNP cord-284409-xiyeceib 161 50 . . . cord-284409-xiyeceib 162 1 NO1-CO-12400 NO1-CO-12400 NNP cord-284409-xiyeceib 163 1 and and CC cord-284409-xiyeceib 163 2 HHSN261200800001E. HHSN261200800001E. NNP cord-284409-xiyeceib 164 1 The the DT cord-284409-xiyeceib 164 2 www.frontiersin.org www.frontiersin.org NN cord-284409-xiyeceib 165 1 The the DT cord-284409-xiyeceib 165 2 antigenic antigenic JJ cord-284409-xiyeceib 165 3 structure structure NN cord-284409-xiyeceib 165 4 of of IN cord-284409-xiyeceib 165 5 the the DT cord-284409-xiyeceib 165 6 HIV HIV NNP cord-284409-xiyeceib 165 7 gp120 gp120 NNP cord-284409-xiyeceib 165 8 envelope envelope NN cord-284409-xiyeceib 165 9 glycoprotein glycoprotein VBG cord-284409-xiyeceib 165 10 Crystal Crystal NNP cord-284409-xiyeceib 165 11 structure structure NN cord-284409-xiyeceib 165 12 of of IN cord-284409-xiyeceib 165 13 a a DT cord-284409-xiyeceib 165 14 soluble soluble JJ cord-284409-xiyeceib 165 15 cleaved cleave VBN cord-284409-xiyeceib 165 16 HIV-1 HIV-1 NNP cord-284409-xiyeceib 165 17 envelope envelope NN cord-284409-xiyeceib 165 18 trimer trimer NN cord-284409-xiyeceib 165 19 Cryo Cryo NNP cord-284409-xiyeceib 165 20 - - HYPH cord-284409-xiyeceib 165 21 EM EM NNP cord-284409-xiyeceib 165 22 structure structure NN cord-284409-xiyeceib 165 23 of of IN cord-284409-xiyeceib 165 24 a a DT cord-284409-xiyeceib 165 25 fully fully RB cord-284409-xiyeceib 165 26 glycosylated glycosylated JJ cord-284409-xiyeceib 165 27 soluble soluble NN cord-284409-xiyeceib 165 28 cleaved cleave VBN cord-284409-xiyeceib 165 29 HIV-1 HIV-1 NNP cord-284409-xiyeceib 165 30 envelope envelope NN cord-284409-xiyeceib 165 31 trimer trimer NN cord-284409-xiyeceib 165 32 Viral viral JJ cord-284409-xiyeceib 165 33 sequence sequence NN cord-284409-xiyeceib 165 34 diversity diversity NN cord-284409-xiyeceib 165 35 : : : cord-284409-xiyeceib 165 36 challenges challenge NNS cord-284409-xiyeceib 165 37 for for IN cord-284409-xiyeceib 165 38 AIDS AIDS NNP cord-284409-xiyeceib 165 39 vaccine vaccine NN cord-284409-xiyeceib 165 40 designs design VBZ cord-284409-xiyeceib 165 41 Antibody antibody NN cord-284409-xiyeceib 165 42 neutralization neutralization NN cord-284409-xiyeceib 165 43 and and CC cord-284409-xiyeceib 165 44 escape escape NN cord-284409-xiyeceib 165 45 by by IN cord-284409-xiyeceib 165 46 HIV-1 HIV-1 NNP cord-284409-xiyeceib 165 47 Examination Examination NNP cord-284409-xiyeceib 165 48 of of IN cord-284409-xiyeceib 165 49 the the DT cord-284409-xiyeceib 165 50 contributions contribution NNS cord-284409-xiyeceib 165 51 of of IN cord-284409-xiyeceib 165 52 size size NN cord-284409-xiyeceib 165 53 and and CC cord-284409-xiyeceib 165 54 avidity avidity NN cord-284409-xiyeceib 165 55 to to IN cord-284409-xiyeceib 165 56 the the DT cord-284409-xiyeceib 165 57 neutralization neutralization NN cord-284409-xiyeceib 165 58 mechanisms mechanism NNS cord-284409-xiyeceib 165 59 of of IN cord-284409-xiyeceib 165 60 the the DT cord-284409-xiyeceib 165 61 anti anti JJ cord-284409-xiyeceib 165 62 - - JJ cord-284409-xiyeceib 165 63 HIV HIV NNP cord-284409-xiyeceib 165 64 antibodies antibody NNS cord-284409-xiyeceib 165 65 b12 b12 NN cord-284409-xiyeceib 165 66 and and CC cord-284409-xiyeceib 166 1 4E10 4e10 CD cord-284409-xiyeceib 166 2 HIV-1 HIV-1 NNP cord-284409-xiyeceib 166 3 evades evade VBZ cord-284409-xiyeceib 166 4 antibody antibody NN cord-284409-xiyeceib 166 5 - - HYPH cord-284409-xiyeceib 166 6 mediated mediate VBN cord-284409-xiyeceib 166 7 neutralization neutralization NN cord-284409-xiyeceib 166 8 through through IN cord-284409-xiyeceib 166 9 conformational conformational JJ cord-284409-xiyeceib 166 10 masking masking NN cord-284409-xiyeceib 166 11 of of IN cord-284409-xiyeceib 166 12 receptor receptor NN cord-284409-xiyeceib 166 13 - - HYPH cord-284409-xiyeceib 166 14 binding bind VBG cord-284409-xiyeceib 166 15 sites site NNS cord-284409-xiyeceib 166 16 HIV HIV NNP cord-284409-xiyeceib 166 17 vaccine vaccine NN cord-284409-xiyeceib 166 18 design design NN cord-284409-xiyeceib 166 19 and and CC cord-284409-xiyeceib 166 20 the the DT cord-284409-xiyeceib 166 21 neutralizing neutralize VBG cord-284409-xiyeceib 166 22 antibody antibody NN cord-284409-xiyeceib 166 23 problem problem NN cord-284409-xiyeceib 166 24 Extensive extensive JJ cord-284409-xiyeceib 166 25 maturation maturation NN cord-284409-xiyeceib 166 26 of of IN cord-284409-xiyeceib 166 27 cross cross JJ cord-284409-xiyeceib 166 28 - - JJ cord-284409-xiyeceib 166 29 reactive reactive JJ cord-284409-xiyeceib 166 30 HIV-1 HIV-1 NNP cord-284409-xiyeceib 166 31 neutralizing neutralize VBG cord-284409-xiyeceib 166 32 antibodies antibody NNS cord-284409-xiyeceib 166 33 but but CC cord-284409-xiyeceib 166 34 not not RB cord-284409-xiyeceib 166 35 of of IN cord-284409-xiyeceib 166 36 neutralizing neutralize VBG cord-284409-xiyeceib 166 37 antibodies antibody NNS cord-284409-xiyeceib 166 38 against against IN cord-284409-xiyeceib 166 39 the the DT cord-284409-xiyeceib 166 40 SARS SARS NNP cord-284409-xiyeceib 166 41 CoV cov NN cord-284409-xiyeceib 166 42 , , , cord-284409-xiyeceib 166 43 Nipah Nipah NNP cord-284409-xiyeceib 166 44 and and CC cord-284409-xiyeceib 166 45 Hendra Hendra NNP cord-284409-xiyeceib 166 46 viruses virus NNS cord-284409-xiyeceib 167 1 All all DT cord-284409-xiyeceib 167 2 known know VBN cord-284409-xiyeceib 167 3 cross cross NN cord-284409-xiyeceib 167 4 reactive reactive JJ cord-284409-xiyeceib 167 5 HIV-1 HIV-1 NNP cord-284409-xiyeceib 167 6 neutralizing neutralize VBG cord-284409-xiyeceib 167 7 antibodies antibody NNS cord-284409-xiyeceib 167 8 are be VBP cord-284409-xiyeceib 167 9 highly highly RB cord-284409-xiyeceib 167 10 divergent divergent JJ cord-284409-xiyeceib 167 11 from from IN cord-284409-xiyeceib 167 12 germline germline NN cord-284409-xiyeceib 167 13 and and CC cord-284409-xiyeceib 167 14 their -PRON- PRP$ cord-284409-xiyeceib 167 15 elicitation elicitation NN cord-284409-xiyeceib 167 16 may may MD cord-284409-xiyeceib 167 17 require require VB cord-284409-xiyeceib 167 18 prolonged prolonged JJ cord-284409-xiyeceib 167 19 periods period NNS cord-284409-xiyeceib 167 20 of of IN cord-284409-xiyeceib 167 21 time time NN cord-284409-xiyeceib 167 22 Germline Germline NNP cord-284409-xiyeceib 167 23 - - HYPH cord-284409-xiyeceib 167 24 like like JJ cord-284409-xiyeceib 167 25 predecessors predecessor NNS cord-284409-xiyeceib 167 26 of of IN cord-284409-xiyeceib 167 27 broadly broadly RB cord-284409-xiyeceib 167 28 neutralizing neutralize VBG cord-284409-xiyeceib 167 29 antibodies antibody NNS cord-284409-xiyeceib 167 30 lack lack VBP cord-284409-xiyeceib 167 31 measurable measurable JJ cord-284409-xiyeceib 167 32 binding binding NN cord-284409-xiyeceib 167 33 to to IN cord-284409-xiyeceib 167 34 HIV-1 HIV-1 NNP cord-284409-xiyeceib 167 35 envelope envelope NN cord-284409-xiyeceib 167 36 glycoproteins glycoprotein NNS cord-284409-xiyeceib 167 37 : : : cord-284409-xiyeceib 167 38 implications implication NNS cord-284409-xiyeceib 167 39 for for IN cord-284409-xiyeceib 167 40 evasion evasion NN cord-284409-xiyeceib 167 41 of of IN cord-284409-xiyeceib 167 42 immune immune JJ cord-284409-xiyeceib 167 43 responses response NNS cord-284409-xiyeceib 167 44 and and CC cord-284409-xiyeceib 167 45 design design NN cord-284409-xiyeceib 167 46 of of IN cord-284409-xiyeceib 167 47 vaccine vaccine NN cord-284409-xiyeceib 167 48 immunogens immunogen NNS cord-284409-xiyeceib 167 49 Identification identification NN cord-284409-xiyeceib 167 50 of of IN cord-284409-xiyeceib 167 51 non non JJ cord-284409-xiyeceib 167 52 - - JJ cord-284409-xiyeceib 167 53 HIV HIV NNP cord-284409-xiyeceib 167 54 immunogens immunogen NNS cord-284409-xiyeceib 167 55 that that WDT cord-284409-xiyeceib 167 56 bind bind VBP cord-284409-xiyeceib 167 57 to to IN cord-284409-xiyeceib 167 58 germline germline JJ cord-284409-xiyeceib 167 59 b12 b12 NN cord-284409-xiyeceib 167 60 predecessors predecessor NNS cord-284409-xiyeceib 167 61 and and CC cord-284409-xiyeceib 167 62 elicit elicit VB cord-284409-xiyeceib 167 63 cross cross JJ cord-284409-xiyeceib 167 64 - - JJ cord-284409-xiyeceib 167 65 reactive reactive JJ cord-284409-xiyeceib 167 66 neutralizing neutralize VBG cord-284409-xiyeceib 167 67 HIV-1 HIV-1 NNP cord-284409-xiyeceib 167 68 antibodies antibody NNS cord-284409-xiyeceib 167 69 Maturation Maturation NNP cord-284409-xiyeceib 167 70 pathways pathway NNS cord-284409-xiyeceib 167 71 of of IN cord-284409-xiyeceib 167 72 cross cross JJ cord-284409-xiyeceib 167 73 - - JJ cord-284409-xiyeceib 167 74 reactive reactive JJ cord-284409-xiyeceib 167 75 HIV-1 HIV-1 NNP cord-284409-xiyeceib 167 76 neutralizing neutralize VBG cord-284409-xiyeceib 167 77 antibodies antibody NNS cord-284409-xiyeceib 167 78 Therapeutic therapeutic JJ cord-284409-xiyeceib 167 79 antibodies antibody NNS cord-284409-xiyeceib 167 80 , , , cord-284409-xiyeceib 167 81 vaccines vaccine NNS cord-284409-xiyeceib 167 82 and and CC cord-284409-xiyeceib 167 83 antibodyomes antibodyomes NNP cord-284409-xiyeceib 167 84 Origin Origin NNP cord-284409-xiyeceib 167 85 , , , cord-284409-xiyeceib 167 86 diversity diversity NN cord-284409-xiyeceib 167 87 , , , cord-284409-xiyeceib 167 88 and and CC cord-284409-xiyeceib 167 89 maturation maturation NN cord-284409-xiyeceib 167 90 of of IN cord-284409-xiyeceib 167 91 human human JJ cord-284409-xiyeceib 167 92 antiviral antiviral JJ cord-284409-xiyeceib 167 93 antibodies antibody NNS cord-284409-xiyeceib 167 94 analyzed analyze VBN cord-284409-xiyeceib 167 95 by by IN cord-284409-xiyeceib 167 96 high high JJ cord-284409-xiyeceib 167 97 - - HYPH cord-284409-xiyeceib 167 98 throughput throughput NN cord-284409-xiyeceib 167 99 sequencing sequence VBG cord-284409-xiyeceib 167 100 HIV-1 HIV-1 NNP cord-284409-xiyeceib 167 101 neutralizing neutralize VBG cord-284409-xiyeceib 167 102 antibodies antibody NNS cord-284409-xiyeceib 167 103 : : : cord-284409-xiyeceib 167 104 understanding understand VBG cord-284409-xiyeceib 167 105 nature nature NN cord-284409-xiyeceib 167 106 's 's POS cord-284409-xiyeceib 167 107 pathways pathway NNS cord-284409-xiyeceib 168 1 Paradigm paradigm NN cord-284409-xiyeceib 168 2 changes change NNS cord-284409-xiyeceib 168 3 and and CC cord-284409-xiyeceib 168 4 the the DT cord-284409-xiyeceib 168 5 future future NN cord-284409-xiyeceib 168 6 of of IN cord-284409-xiyeceib 168 7 HIV HIV NNP cord-284409-xiyeceib 168 8 vaccine vaccine NN cord-284409-xiyeceib 168 9 research research NN cord-284409-xiyeceib 168 10 : : : cord-284409-xiyeceib 168 11 a a DT cord-284409-xiyeceib 168 12 summary summary NN cord-284409-xiyeceib 168 13 of of IN cord-284409-xiyeceib 168 14 a a DT cord-284409-xiyeceib 168 15 workshop workshop NN cord-284409-xiyeceib 168 16 held hold VBN cord-284409-xiyeceib 168 17 in in IN cord-284409-xiyeceib 168 18 Baltimore Baltimore NNP cord-284409-xiyeceib 168 19 on on IN cord-284409-xiyeceib 168 20 20 20 CD cord-284409-xiyeceib 168 21 Construction construction NN cord-284409-xiyeceib 168 22 of of IN cord-284409-xiyeceib 168 23 a a DT cord-284409-xiyeceib 168 24 large large JJ cord-284409-xiyeceib 168 25 naive naive JJ cord-284409-xiyeceib 168 26 human human JJ cord-284409-xiyeceib 168 27 phage phage NN cord-284409-xiyeceib 168 28 - - HYPH cord-284409-xiyeceib 168 29 displayed display VBN cord-284409-xiyeceib 168 30 Fab Fab NNP cord-284409-xiyeceib 168 31 library library NN cord-284409-xiyeceib 168 32 through through IN cord-284409-xiyeceib 168 33 one one CD cord-284409-xiyeceib 168 34 - - HYPH cord-284409-xiyeceib 168 35 step step NN cord-284409-xiyeceib 168 36 cloning clone VBG cord-284409-xiyeceib 168 37 Expressed express VBD cord-284409-xiyeceib 168 38 antibody antibody NN cord-284409-xiyeceib 168 39 repertoires repertoire NNS cord-284409-xiyeceib 168 40 in in IN cord-284409-xiyeceib 168 41 human human JJ cord-284409-xiyeceib 168 42 cord cord NN cord-284409-xiyeceib 168 43 blood blood NN cord-284409-xiyeceib 168 44 cells cell NNS cord-284409-xiyeceib 168 45 : : : cord-284409-xiyeceib 168 46 454 454 CD cord-284409-xiyeceib 168 47 sequencing sequencing NN cord-284409-xiyeceib 168 48 and and CC cord-284409-xiyeceib 168 49 IMGT IMGT NNP cord-284409-xiyeceib 168 50 / / SYM cord-284409-xiyeceib 168 51 HighV HighV NNP cord-284409-xiyeceib 168 52 - - HYPH cord-284409-xiyeceib 168 53 QUEST quest NN cord-284409-xiyeceib 168 54 analysis analysis NN cord-284409-xiyeceib 168 55 of of IN cord-284409-xiyeceib 168 56 germline germline JJ cord-284409-xiyeceib 168 57 gene gene NN cord-284409-xiyeceib 168 58 usage usage NN cord-284409-xiyeceib 168 59 , , , cord-284409-xiyeceib 168 60 junctional junctional JJ cord-284409-xiyeceib 168 61 diversity diversity NN cord-284409-xiyeceib 168 62 , , , cord-284409-xiyeceib 168 63 and and CC cord-284409-xiyeceib 168 64 somatic somatic JJ cord-284409-xiyeceib 168 65 mutations mutation NNS cord-284409-xiyeceib 168 66 IMGT((R IMGT((R NNP cord-284409-xiyeceib 168 67 ) ) -RRB- cord-284409-xiyeceib 168 68 ) ) -RRB- cord-284409-xiyeceib 168 69 tools tool NNS cord-284409-xiyeceib 168 70 for for IN cord-284409-xiyeceib 168 71 the the DT cord-284409-xiyeceib 168 72 nucleotide nucleotide JJ cord-284409-xiyeceib 168 73 analysis analysis NN cord-284409-xiyeceib 168 74 of of IN cord-284409-xiyeceib 168 75 immunoglobulin immunoglobulin NN cord-284409-xiyeceib 168 76 ( ( -LRB- cord-284409-xiyeceib 168 77 IG IG NNP cord-284409-xiyeceib 168 78 ) ) -RRB- cord-284409-xiyeceib 168 79 and and CC cord-284409-xiyeceib 168 80 T T NNP cord-284409-xiyeceib 168 81 cell cell NN cord-284409-xiyeceib 168 82 receptor receptor NN cord-284409-xiyeceib 168 83 ( ( -LRB- cord-284409-xiyeceib 168 84 TR tr NN cord-284409-xiyeceib 168 85 ) ) -RRB- cord-284409-xiyeceib 168 86 BioEdit bioedit NN cord-284409-xiyeceib 168 87 : : : cord-284409-xiyeceib 168 88 a a DT cord-284409-xiyeceib 168 89 user user NN cord-284409-xiyeceib 168 90 - - HYPH cord-284409-xiyeceib 168 91 friendly friendly JJ cord-284409-xiyeceib 168 92 biological biological JJ cord-284409-xiyeceib 168 93 sequence sequence NN cord-284409-xiyeceib 168 94 alignment alignment NN cord-284409-xiyeceib 168 95 editor editor NN cord-284409-xiyeceib 168 96 and and CC cord-284409-xiyeceib 168 97 analysis analysis NN cord-284409-xiyeceib 168 98 program program NN cord-284409-xiyeceib 168 99 for for IN cord-284409-xiyeceib 168 100 Windows Windows NNP cord-284409-xiyeceib 168 101 95/98 95/98 CD cord-284409-xiyeceib 168 102 / / SYM cord-284409-xiyeceib 168 103 NT NT NNP cord-284409-xiyeceib 168 104 phyloXML phyloXML NNP cord-284409-xiyeceib 168 105 : : : cord-284409-xiyeceib 168 106 XML xml NN cord-284409-xiyeceib 168 107 for for IN cord-284409-xiyeceib 168 108 evolutionary evolutionary JJ cord-284409-xiyeceib 168 109 biology biology NN cord-284409-xiyeceib 168 110 and and CC cord-284409-xiyeceib 168 111 comparative comparative JJ cord-284409-xiyeceib 168 112 genomics genomic NNS cord-284409-xiyeceib 169 1 Focused focused JJ cord-284409-xiyeceib 169 2 evolution evolution NN cord-284409-xiyeceib 169 3 of of IN cord-284409-xiyeceib 169 4 HIV-1 HIV-1 NNP cord-284409-xiyeceib 169 5 neutralizing neutralize VBG cord-284409-xiyeceib 169 6 antibodies antibody NNS cord-284409-xiyeceib 169 7 revealed reveal VBN cord-284409-xiyeceib 169 8 by by IN cord-284409-xiyeceib 169 9 structures structure NNS cord-284409-xiyeceib 169 10 and and CC cord-284409-xiyeceib 169 11 deep deep JJ cord-284409-xiyeceib 169 12 sequencing sequencing NN cord-284409-xiyeceib 169 13 Sequence sequence NN cord-284409-xiyeceib 169 14 and and CC cord-284409-xiyeceib 169 15 structural structural JJ cord-284409-xiyeceib 169 16 convergence convergence NN cord-284409-xiyeceib 169 17 of of IN cord-284409-xiyeceib 169 18 broad broad JJ cord-284409-xiyeceib 169 19 and and CC cord-284409-xiyeceib 169 20 potent potent JJ cord-284409-xiyeceib 169 21 HIV HIV NNP cord-284409-xiyeceib 169 22 antibodies antibody NNS cord-284409-xiyeceib 169 23 that that WDT cord-284409-xiyeceib 169 24 mimic mimic VBP cord-284409-xiyeceib 169 25 CD4 CD4 NNP cord-284409-xiyeceib 169 26 binding bind VBG cord-284409-xiyeceib 169 27 Immunologic immunologic JJ cord-284409-xiyeceib 169 28 basis basis NN cord-284409-xiyeceib 169 29 for for IN cord-284409-xiyeceib 169 30 long long JJ cord-284409-xiyeceib 169 31 HCDR3s hcdr3s CD cord-284409-xiyeceib 169 32 in in IN cord-284409-xiyeceib 169 33 broadly broadly RB cord-284409-xiyeceib 169 34 neutralizing neutralize VBG cord-284409-xiyeceib 169 35 antibodies antibody NNS cord-284409-xiyeceib 169 36 against against IN cord-284409-xiyeceib 169 37 HIV-1 HIV-1 NNP cord-284409-xiyeceib 169 38 Recombinant Recombinant NNP cord-284409-xiyeceib 169 39 HIV HIV NNP cord-284409-xiyeceib 169 40 envelope envelope NN cord-284409-xiyeceib 169 41 proteins protein NNS cord-284409-xiyeceib 169 42 fail fail VBP cord-284409-xiyeceib 169 43 to to TO cord-284409-xiyeceib 169 44 engage engage VB cord-284409-xiyeceib 169 45 germline germline JJ cord-284409-xiyeceib 169 46 versions version NNS cord-284409-xiyeceib 169 47 of of IN cord-284409-xiyeceib 169 48 anti anti JJ cord-284409-xiyeceib 169 49 - - JJ cord-284409-xiyeceib 169 50 CD4bs cd4bs JJ cord-284409-xiyeceib 169 51 bNAbs bnabs NN cord-284409-xiyeceib 169 52 Engineering Engineering NNP cord-284409-xiyeceib 169 53 HIV HIV NNP cord-284409-xiyeceib 169 54 envelope envelope NN cord-284409-xiyeceib 169 55 protein protein NN cord-284409-xiyeceib 169 56 to to TO cord-284409-xiyeceib 169 57 activate activate VB cord-284409-xiyeceib 169 58 germline germline NN cord-284409-xiyeceib 169 59 B b NN cord-284409-xiyeceib 169 60 cell cell NN cord-284409-xiyeceib 169 61 receptors receptor NNS cord-284409-xiyeceib 169 62 of of IN cord-284409-xiyeceib 170 1 broadly broadly RB cord-284409-xiyeceib 170 2 neutralizing neutralize VBG cord-284409-xiyeceib 170 3 anti anti JJ cord-284409-xiyeceib 170 4 - - JJ cord-284409-xiyeceib 170 5 CD4 CD4 NNP cord-284409-xiyeceib 170 6 binding bind VBG cord-284409-xiyeceib 170 7 site site NN cord-284409-xiyeceib 170 8 antibodies antibody NNS cord-284409-xiyeceib 171 1 Diverse diverse JJ cord-284409-xiyeceib 171 2 recombinant recombinant JJ cord-284409-xiyeceib 171 3 HIV-1 HIV-1 NNP cord-284409-xiyeceib 171 4 Envs Envs NNP cord-284409-xiyeceib 171 5 fail fail VB cord-284409-xiyeceib 171 6 to to TO cord-284409-xiyeceib 171 7 activate activate VB cord-284409-xiyeceib 171 8 B b NN cord-284409-xiyeceib 171 9 cells cell NNS cord-284409-xiyeceib 171 10 expressing express VBG cord-284409-xiyeceib 171 11 the the DT cord-284409-xiyeceib 171 12 germline germline NN cord-284409-xiyeceib 171 13 B b NN cord-284409-xiyeceib 171 14 cell cell NN cord-284409-xiyeceib 171 15 receptors receptor NNS cord-284409-xiyeceib 171 16 of of IN cord-284409-xiyeceib 171 17 the the DT cord-284409-xiyeceib 171 18 broadly broadly RB cord-284409-xiyeceib 171 19 neutralizing neutralize VBG cord-284409-xiyeceib 171 20 anti anti JJ cord-284409-xiyeceib 171 21 - - JJ cord-284409-xiyeceib 171 22 HIV-1 HIV-1 NNP cord-284409-xiyeceib 171 23 antibodies antibody NNS cord-284409-xiyeceib 171 24 PG9 PG9 NNP cord-284409-xiyeceib 171 25 and and CC cord-284409-xiyeceib 171 26 447 447 CD cord-284409-xiyeceib 171 27 - - HYPH cord-284409-xiyeceib 171 28 52D 52d CD cord-284409-xiyeceib 171 29 Co co NN cord-284409-xiyeceib 171 30 - - NN cord-284409-xiyeceib 171 31 evolution evolution NN cord-284409-xiyeceib 171 32 of of IN cord-284409-xiyeceib 171 33 a a DT cord-284409-xiyeceib 171 34 broadly broadly RB cord-284409-xiyeceib 171 35 neutralizing neutralize VBG cord-284409-xiyeceib 171 36 HIV-1 HIV-1 NNP cord-284409-xiyeceib 171 37 antibody antibody NN cord-284409-xiyeceib 171 38 and and CC cord-284409-xiyeceib 171 39 founder founder NN cord-284409-xiyeceib 171 40 virus virus NN cord-284409-xiyeceib 171 41 Developmental developmental JJ cord-284409-xiyeceib 171 42 pathway pathway NN cord-284409-xiyeceib 171 43 for for IN cord-284409-xiyeceib 171 44 potent potent JJ cord-284409-xiyeceib 171 45 V1V2-directed v1v2-directe VBN cord-284409-xiyeceib 171 46 HIV HIV NNP cord-284409-xiyeceib 171 47 - - HYPH cord-284409-xiyeceib 171 48 neutralizing neutralize VBG cord-284409-xiyeceib 171 49 antibodies antibody NNS cord-284409-xiyeceib 171 50 Rational rational JJ cord-284409-xiyeceib 171 51 HIV HIV NNP cord-284409-xiyeceib 171 52 immunogen immunogen NN cord-284409-xiyeceib 171 53 design design NN cord-284409-xiyeceib 171 54 to to TO cord-284409-xiyeceib 171 55 target target VB cord-284409-xiyeceib 171 56 specific specific JJ cord-284409-xiyeceib 171 57 germline germline NN cord-284409-xiyeceib 171 58 B b NN cord-284409-xiyeceib 171 59 cell cell NN cord-284409-xiyeceib 171 60 receptors receptor NNS cord-284409-xiyeceib 171 61 Somatic somatic JJ cord-284409-xiyeceib 171 62 mutations mutation NNS cord-284409-xiyeceib 171 63 of of IN cord-284409-xiyeceib 171 64 the the DT cord-284409-xiyeceib 171 65 immunoglobulin immunoglobulin NN cord-284409-xiyeceib 171 66 framework framework NN cord-284409-xiyeceib 171 67 are be VBP cord-284409-xiyeceib 171 68 generally generally RB cord-284409-xiyeceib 171 69 required require VBN cord-284409-xiyeceib 171 70 for for IN cord-284409-xiyeceib 171 71 broad broad JJ cord-284409-xiyeceib 171 72 and and CC cord-284409-xiyeceib 171 73 potent potent JJ cord-284409-xiyeceib 171 74 HIV-1 HIV-1 NNP cord-284409-xiyeceib 171 75 neutralization neutralization NN cord-284409-xiyeceib 171 76 Multidonor Multidonor NNP cord-284409-xiyeceib 171 77 analysis analysis NN cord-284409-xiyeceib 171 78 reveals reveal VBZ cord-284409-xiyeceib 171 79 structural structural JJ cord-284409-xiyeceib 171 80 elements element NNS cord-284409-xiyeceib 171 81 , , , cord-284409-xiyeceib 171 82 genetic genetic JJ cord-284409-xiyeceib 171 83 determinants determinant NNS cord-284409-xiyeceib 171 84 , , , cord-284409-xiyeceib 171 85 and and CC cord-284409-xiyeceib 171 86 maturation maturation NN cord-284409-xiyeceib 171 87 pathway pathway NN cord-284409-xiyeceib 171 88 for for IN cord-284409-xiyeceib 171 89 HIV-1 HIV-1 NNP cord-284409-xiyeceib 171 90 neutralization neutralization NN cord-284409-xiyeceib 171 91 by by IN cord-284409-xiyeceib 171 92 VRC01-class VRC01-class NNP cord-284409-xiyeceib 171 93 antibodies antibody NNS cord-284409-xiyeceib 171 94 Mining Mining NNP cord-284409-xiyeceib 171 95 the the DT cord-284409-xiyeceib 171 96 antibodyome antibodyome NN cord-284409-xiyeceib 171 97 for for IN cord-284409-xiyeceib 171 98 HIV-1-neutralizing hiv-1-neutralize VBG cord-284409-xiyeceib 171 99 antibodies antibody NNS cord-284409-xiyeceib 171 100 with with IN cord-284409-xiyeceib 171 101 next next JJ cord-284409-xiyeceib 171 102 - - HYPH cord-284409-xiyeceib 171 103 generation generation NN cord-284409-xiyeceib 171 104 sequencing sequencing NN cord-284409-xiyeceib 171 105 and and CC cord-284409-xiyeceib 171 106 phylogenetic phylogenetic JJ cord-284409-xiyeceib 171 107 pairing pairing NN cord-284409-xiyeceib 171 108 of of IN cord-284409-xiyeceib 171 109 heavy heavy JJ cord-284409-xiyeceib 171 110 / / SYM cord-284409-xiyeceib 171 111 light light NN cord-284409-xiyeceib 171 112 chains chain NNS cord-284409-xiyeceib 171 113 De de FW cord-284409-xiyeceib 171 114 novo novo NN cord-284409-xiyeceib 171 115 identification identification NN cord-284409-xiyeceib 171 116 of of IN cord-284409-xiyeceib 171 117 VRC01 VRC01 NNP cord-284409-xiyeceib 171 118 class class NN cord-284409-xiyeceib 171 119 HIV-1-neutralizing hiv-1-neutralize VBG cord-284409-xiyeceib 171 120 antibodies antibody NNS cord-284409-xiyeceib 171 121 by by IN cord-284409-xiyeceib 171 122 next next JJ cord-284409-xiyeceib 171 123 - - HYPH cord-284409-xiyeceib 171 124 generation generation NN cord-284409-xiyeceib 171 125 sequencing sequencing NN cord-284409-xiyeceib 171 126 of of IN cord-284409-xiyeceib 171 127 B b NN cord-284409-xiyeceib 171 128 - - HYPH cord-284409-xiyeceib 171 129 cell cell NN cord-284409-xiyeceib 171 130 transcripts transcript NNS cord-284409-xiyeceib 172 1 The the DT cord-284409-xiyeceib 172 2 effects effect NNS cord-284409-xiyeceib 172 3 of of IN cord-284409-xiyeceib 172 4 somatic somatic JJ cord-284409-xiyeceib 172 5 hypermutation hypermutation NN cord-284409-xiyeceib 172 6 on on IN cord-284409-xiyeceib 172 7 neutralization neutralization NN cord-284409-xiyeceib 172 8 and and CC cord-284409-xiyeceib 172 9 binding bind VBG cord-284409-xiyeceib 172 10 in in IN cord-284409-xiyeceib 172 11 the the DT cord-284409-xiyeceib 172 12 PGT121 PGT121 NNP cord-284409-xiyeceib 172 13 family family NN cord-284409-xiyeceib 172 14 of of IN cord-284409-xiyeceib 172 15 broadly broadly RB cord-284409-xiyeceib 172 16 neutralizing neutralize VBG cord-284409-xiyeceib 172 17 HIV HIV NNP cord-284409-xiyeceib 172 18 antibodies antibody NNS cord-284409-xiyeceib 172 19 Cross Cross NNP cord-284409-xiyeceib 172 20 - - JJ cord-284409-xiyeceib 172 21 reactive reactive JJ cord-284409-xiyeceib 172 22 HIV-1-neutralizing hiv-1-neutralize VBG cord-284409-xiyeceib 172 23 human human JJ cord-284409-xiyeceib 172 24 monoclonal monoclonal JJ cord-284409-xiyeceib 172 25 antibodies antibody NNS cord-284409-xiyeceib 172 26 identified identify VBN cord-284409-xiyeceib 172 27 from from IN cord-284409-xiyeceib 172 28 a a DT cord-284409-xiyeceib 172 29 patient patient NN cord-284409-xiyeceib 172 30 with with IN cord-284409-xiyeceib 172 31 2F5-like 2f5-like CD cord-284409-xiyeceib 172 32 antibodies antibody NNS cord-284409-xiyeceib 172 33 Structural structural JJ cord-284409-xiyeceib 172 34 basis basis NN cord-284409-xiyeceib 172 35 for for IN cord-284409-xiyeceib 172 36 HIV-1 HIV-1 NNP cord-284409-xiyeceib 172 37 neutralization neutralization NN cord-284409-xiyeceib 172 38 by by IN cord-284409-xiyeceib 172 39 2F5-like 2f5-like CD cord-284409-xiyeceib 172 40 antibodies antibody NNS cord-284409-xiyeceib 172 41 m66 m66 NN cord-284409-xiyeceib 172 42 and and CC cord-284409-xiyeceib 172 43 m66.6 m66.6 DT cord-284409-xiyeceib 172 44 Early early JJ cord-284409-xiyeceib 172 45 development development NN cord-284409-xiyeceib 172 46 of of IN cord-284409-xiyeceib 172 47 broadly broadly RB cord-284409-xiyeceib 172 48 neutralizing neutralize VBG cord-284409-xiyeceib 172 49 antibodies antibody NNS cord-284409-xiyeceib 172 50 in in IN cord-284409-xiyeceib 172 51 HIV-1-infected hiv-1-infecte VBN cord-284409-xiyeceib 172 52 infants infant NNS cord-284409-xiyeceib 173 1 Precise precise JJ cord-284409-xiyeceib 173 2 determination determination NN cord-284409-xiyeceib 173 3 of of IN cord-284409-xiyeceib 173 4 the the DT cord-284409-xiyeceib 173 5 diversity diversity NN cord-284409-xiyeceib 173 6 of of IN cord-284409-xiyeceib 173 7 a a DT cord-284409-xiyeceib 173 8 combinatorial combinatorial JJ cord-284409-xiyeceib 173 9 antibody antibody NN cord-284409-xiyeceib 173 10 library library NN cord-284409-xiyeceib 173 11 gives give VBZ cord-284409-xiyeceib 173 12 insight insight NN cord-284409-xiyeceib 173 13 into into IN cord-284409-xiyeceib 173 14 the the DT cord-284409-xiyeceib 173 15 human human JJ cord-284409-xiyeceib 173 16 immunoglobulin immunoglobulin NN cord-284409-xiyeceib 173 17 repertoire repertoire NN cord-284409-xiyeceib 173 18 Junctional Junctional NNP cord-284409-xiyeceib 173 19 amino amino JJ cord-284409-xiyeceib 173 20 acids acid NNS cord-284409-xiyeceib 173 21 determine determine VBP cord-284409-xiyeceib 173 22 the the DT cord-284409-xiyeceib 173 23 maturation maturation NN cord-284409-xiyeceib 173 24 pathway pathway NN cord-284409-xiyeceib 173 25 of of IN cord-284409-xiyeceib 173 26 an an DT cord-284409-xiyeceib 173 27 antibody antibody NN cord-284409-xiyeceib 173 28 Structural structural JJ cord-284409-xiyeceib 173 29 basis basis NN cord-284409-xiyeceib 173 30 for for IN cord-284409-xiyeceib 173 31 germ germ NN cord-284409-xiyeceib 173 32 - - HYPH cord-284409-xiyeceib 173 33 line line NN cord-284409-xiyeceib 173 34 gene gene NN cord-284409-xiyeceib 173 35 usage usage NN cord-284409-xiyeceib 173 36 of of IN cord-284409-xiyeceib 173 37 a a DT cord-284409-xiyeceib 173 38 potent potent JJ cord-284409-xiyeceib 173 39 class class NN cord-284409-xiyeceib 173 40 of of IN cord-284409-xiyeceib 173 41 antibodies antibody NNS cord-284409-xiyeceib 173 42 targeting target VBG cord-284409-xiyeceib 173 43 the the DT cord-284409-xiyeceib 173 44 CD4-binding cd4-binding NN cord-284409-xiyeceib 173 45 site site NN cord-284409-xiyeceib 173 46 of of IN cord-284409-xiyeceib 173 47 HIV-1 HIV-1 NNP cord-284409-xiyeceib 173 48 gp120 gp120 NNP cord-284409-xiyeceib 173 49 Forced forced JJ cord-284409-xiyeceib 173 50 usage usage NN cord-284409-xiyeceib 173 51 of of IN cord-284409-xiyeceib 173 52 positively positively RB cord-284409-xiyeceib 173 53 charged charge VBN cord-284409-xiyeceib 173 54 amino amino NN cord-284409-xiyeceib 173 55 acids acid NNS cord-284409-xiyeceib 173 56 in in IN cord-284409-xiyeceib 173 57 immunoglobulin immunoglobulin NN cord-284409-xiyeceib 173 58 CDR CDR NNP cord-284409-xiyeceib 173 59 - - HYPH cord-284409-xiyeceib 173 60 H3 H3 NNP cord-284409-xiyeceib 173 61 impairs impair VBZ cord-284409-xiyeceib 173 62 B b NN cord-284409-xiyeceib 173 63 cell cell NN cord-284409-xiyeceib 173 64 development development NN cord-284409-xiyeceib 173 65 and and CC cord-284409-xiyeceib 173 66 antibody antibody NN cord-284409-xiyeceib 173 67 production production NN cord-284409-xiyeceib 173 68 Preferential preferential JJ cord-284409-xiyeceib 173 69 use use NN cord-284409-xiyeceib 173 70 of of IN cord-284409-xiyeceib 173 71 DH DH NNP cord-284409-xiyeceib 173 72 reading reading NN cord-284409-xiyeceib 173 73 frame frame NN cord-284409-xiyeceib 173 74 2 2 CD cord-284409-xiyeceib 173 75 alters alter VBZ cord-284409-xiyeceib 173 76 B b NN cord-284409-xiyeceib 173 77 cell cell NN cord-284409-xiyeceib 173 78 development development NN cord-284409-xiyeceib 173 79 and and CC cord-284409-xiyeceib 173 80 antigen antigen NN cord-284409-xiyeceib 173 81 - - HYPH cord-284409-xiyeceib 173 82 specific specific JJ cord-284409-xiyeceib 173 83 antibody antibody NN cord-284409-xiyeceib 173 84 production production NN cord-284409-xiyeceib 173 85 B b NN cord-284409-xiyeceib 173 86 cell cell NN cord-284409-xiyeceib 173 87 development development NN cord-284409-xiyeceib 173 88 regulated regulate VBN cord-284409-xiyeceib 173 89 by by IN cord-284409-xiyeceib 173 90 gene gene NN cord-284409-xiyeceib 173 91 rearrangement rearrangement NN cord-284409-xiyeceib 173 92 : : : cord-284409-xiyeceib 174 1 arrest arrest NN cord-284409-xiyeceib 174 2 of of IN cord-284409-xiyeceib 174 3 maturation maturation NN cord-284409-xiyeceib 174 4 by by IN cord-284409-xiyeceib 174 5 membrane membrane NN cord-284409-xiyeceib 174 6 - - HYPH cord-284409-xiyeceib 174 7 bound bind VBN cord-284409-xiyeceib 174 8 D d NN cord-284409-xiyeceib 174 9 mu mu NN cord-284409-xiyeceib 174 10 protein protein NN cord-284409-xiyeceib 174 11 and and CC cord-284409-xiyeceib 174 12 selection selection NN cord-284409-xiyeceib 174 13 of of IN cord-284409-xiyeceib 174 14 DH DH NNP cord-284409-xiyeceib 174 15 element element NN cord-284409-xiyeceib 174 16 reading reading NN cord-284409-xiyeceib 174 17 frames frame VBZ cord-284409-xiyeceib 174 18 The the DT cord-284409-xiyeceib 174 19 restricted restricted JJ cord-284409-xiyeceib 174 20 DH dh NN cord-284409-xiyeceib 174 21 gene gene NN cord-284409-xiyeceib 174 22 reading reading NN cord-284409-xiyeceib 174 23 frame frame NN cord-284409-xiyeceib 174 24 usage usage NN cord-284409-xiyeceib 174 25 in in IN cord-284409-xiyeceib 174 26 the the DT cord-284409-xiyeceib 174 27 expressed express VBN cord-284409-xiyeceib 174 28 human human JJ cord-284409-xiyeceib 174 29 antibody antibody NN cord-284409-xiyeceib 174 30 repertoire repertoire NN cord-284409-xiyeceib 174 31 is be VBZ cord-284409-xiyeceib 174 32 selected select VBN cord-284409-xiyeceib 174 33 based base VBN cord-284409-xiyeceib 174 34 upon upon IN cord-284409-xiyeceib 174 35 its -PRON- PRP$ cord-284409-xiyeceib 174 36 amino amino NN cord-284409-xiyeceib 174 37 acid acid NN cord-284409-xiyeceib 174 38 content content NN cord-284409-xiyeceib 174 39 Regulation regulation NN cord-284409-xiyeceib 174 40 of of IN cord-284409-xiyeceib 174 41 repertoire repertoire NN cord-284409-xiyeceib 174 42 development development NN cord-284409-xiyeceib 174 43 through through IN cord-284409-xiyeceib 174 44 genetic genetic JJ cord-284409-xiyeceib 174 45 control control NN cord-284409-xiyeceib 174 46 of of IN cord-284409-xiyeceib 174 47 DH DH NNP cord-284409-xiyeceib 174 48 reading reading NN cord-284409-xiyeceib 174 49 frame frame NN cord-284409-xiyeceib 174 50 preference preference NN cord-284409-xiyeceib 175 1 The the DT cord-284409-xiyeceib 175 2 promise promise NN cord-284409-xiyeceib 175 3 and and CC cord-284409-xiyeceib 175 4 challenge challenge NN cord-284409-xiyeceib 175 5 of of IN cord-284409-xiyeceib 175 6 high high JJ cord-284409-xiyeceib 175 7 - - HYPH cord-284409-xiyeceib 175 8 throughput throughput NN cord-284409-xiyeceib 175 9 sequencing sequencing NN cord-284409-xiyeceib 175 10 of of IN cord-284409-xiyeceib 175 11 the the DT cord-284409-xiyeceib 175 12 antibody antibody NN cord-284409-xiyeceib 175 13 repertoire repertoire NN cord-284409-xiyeceib 175 14 B b NN cord-284409-xiyeceib 175 15 - - HYPH cord-284409-xiyeceib 175 16 cell cell NN cord-284409-xiyeceib 175 17 - - HYPH cord-284409-xiyeceib 175 18 lineage lineage NN cord-284409-xiyeceib 175 19 immunogen immunogen NN cord-284409-xiyeceib 175 20 design design NN cord-284409-xiyeceib 175 21 in in IN cord-284409-xiyeceib 175 22 vaccine vaccine NN cord-284409-xiyeceib 175 23 development development NN cord-284409-xiyeceib 175 24 with with IN cord-284409-xiyeceib 175 25 HIV-1 HIV-1 NNP cord-284409-xiyeceib 175 26 as as IN cord-284409-xiyeceib 175 27 a a DT cord-284409-xiyeceib 175 28 case case NN cord-284409-xiyeceib 175 29 study study NN cord-284409-xiyeceib 175 30 Immunogen Immunogen NNP cord-284409-xiyeceib 175 31 design design NN cord-284409-xiyeceib 175 32 for for IN cord-284409-xiyeceib 175 33 HIV-1 HIV-1 NNP cord-284409-xiyeceib 175 34 and and CC cord-284409-xiyeceib 175 35 influenza influenza NN cord-284409-xiyeceib 175 36 Recognition Recognition NNP cord-284409-xiyeceib 175 37 of of IN cord-284409-xiyeceib 175 38 synthetic synthetic JJ cord-284409-xiyeceib 175 39 glycopeptides glycopeptide NNS cord-284409-xiyeceib 175 40 by by IN cord-284409-xiyeceib 175 41 HIV-1 HIV-1 NNP cord-284409-xiyeceib 175 42 broadly broadly RB cord-284409-xiyeceib 175 43 neutralizing neutralize VBG cord-284409-xiyeceib 175 44 antibodies antibody NNS cord-284409-xiyeceib 175 45 and and CC cord-284409-xiyeceib 175 46 their -PRON- PRP$ cord-284409-xiyeceib 175 47 unmutated unmutated JJ cord-284409-xiyeceib 175 48 ancestors ancestor NNS cord-284409-xiyeceib 175 49 content content JJ cord-284409-xiyeceib 175 50 of of IN cord-284409-xiyeceib 175 51 this this DT cord-284409-xiyeceib 175 52 publication publication NN cord-284409-xiyeceib 175 53 does do VBZ cord-284409-xiyeceib 175 54 not not RB cord-284409-xiyeceib 175 55 necessarily necessarily RB cord-284409-xiyeceib 175 56 reflect reflect VB cord-284409-xiyeceib 175 57 the the DT cord-284409-xiyeceib 175 58 views view NNS cord-284409-xiyeceib 175 59 or or CC cord-284409-xiyeceib 175 60 policies policy NNS cord-284409-xiyeceib 175 61 of of IN cord-284409-xiyeceib 175 62 the the DT cord-284409-xiyeceib 175 63 Department Department NNP cord-284409-xiyeceib 175 64 of of IN cord-284409-xiyeceib 175 65 Health Health NNP cord-284409-xiyeceib 175 66 and and CC cord-284409-xiyeceib 175 67 Human Human NNP cord-284409-xiyeceib 175 68 Services Services NNPS cord-284409-xiyeceib 175 69 , , , cord-284409-xiyeceib 175 70 nor nor CC cord-284409-xiyeceib 175 71 does do VBZ cord-284409-xiyeceib 175 72 the the DT cord-284409-xiyeceib 175 73 mention mention NN cord-284409-xiyeceib 175 74 of of IN cord-284409-xiyeceib 175 75 trade trade NN cord-284409-xiyeceib 175 76 names name NNS cord-284409-xiyeceib 175 77 , , , cord-284409-xiyeceib 175 78 commercial commercial JJ cord-284409-xiyeceib 175 79 products product NNS cord-284409-xiyeceib 175 80 , , , cord-284409-xiyeceib 175 81 or or CC cord-284409-xiyeceib 175 82 organizations organization NNS cord-284409-xiyeceib 175 83 imply imply VBP cord-284409-xiyeceib 175 84 endorsement endorsement NN cord-284409-xiyeceib 175 85 by by IN cord-284409-xiyeceib 175 86 the the DT cord-284409-xiyeceib 175 87 U.S. U.S. NNP cord-284409-xiyeceib 175 88 Government Government NNP cord-284409-xiyeceib 175 89 . . . cord-284409-xiyeceib 176 1 The the DT cord-284409-xiyeceib 176 2 Guest Guest NNP cord-284409-xiyeceib 176 3 Associate Associate NNP cord-284409-xiyeceib 176 4 Editor Editor NNP cord-284409-xiyeceib 176 5 Marc Marc NNP cord-284409-xiyeceib 176 6 H. H. NNP cord-284409-xiyeceib 176 7 V. V. NNP cord-284409-xiyeceib 176 8 Van Van NNP cord-284409-xiyeceib 176 9 Regenmortel Regenmortel NNP cord-284409-xiyeceib 176 10 declares declare VBZ cord-284409-xiyeceib 176 11 that that IN cord-284409-xiyeceib 176 12 , , , cord-284409-xiyeceib 176 13 despite despite IN cord-284409-xiyeceib 176 14 having have VBG cord-284409-xiyeceib 176 15 collaborated collaborate VBN cord-284409-xiyeceib 176 16 with with IN cord-284409-xiyeceib 176 17 the the DT cord-284409-xiyeceib 176 18 author author NN cord-284409-xiyeceib 176 19 Dimiter Dimiter NNP cord-284409-xiyeceib 176 20 S. S. NNP cord-284409-xiyeceib 176 21 Dimitrov Dimitrov NNP cord-284409-xiyeceib 176 22 , , , cord-284409-xiyeceib 176 23 the the DT cord-284409-xiyeceib 176 24 review review NN cord-284409-xiyeceib 176 25 process process NN cord-284409-xiyeceib 176 26 was be VBD cord-284409-xiyeceib 176 27 handled handle VBN cord-284409-xiyeceib 176 28 objectively objectively RB cord-284409-xiyeceib 176 29 and and CC cord-284409-xiyeceib 176 30 no no DT cord-284409-xiyeceib 176 31 conflict conflict NN cord-284409-xiyeceib 176 32 of of IN cord-284409-xiyeceib 176 33 interest interest NN cord-284409-xiyeceib 176 34 exists exist VBZ cord-284409-xiyeceib 176 35 . . . cord-284409-xiyeceib 177 1 The the DT cord-284409-xiyeceib 177 2 authors author NNS cord-284409-xiyeceib 177 3 declare declare VBP cord-284409-xiyeceib 177 4 that that IN cord-284409-xiyeceib 177 5 the the DT cord-284409-xiyeceib 177 6 research research NN cord-284409-xiyeceib 177 7 was be VBD cord-284409-xiyeceib 177 8 conducted conduct VBN cord-284409-xiyeceib 177 9 in in IN cord-284409-xiyeceib 177 10 the the DT cord-284409-xiyeceib 177 11 absence absence NN cord-284409-xiyeceib 177 12 of of IN cord-284409-xiyeceib 177 13 any any DT cord-284409-xiyeceib 177 14 commercial commercial JJ cord-284409-xiyeceib 177 15 or or CC cord-284409-xiyeceib 177 16 financial financial JJ cord-284409-xiyeceib 177 17 relationships relationship NNS cord-284409-xiyeceib 177 18 that that WDT cord-284409-xiyeceib 177 19 could could MD cord-284409-xiyeceib 177 20 be be VB cord-284409-xiyeceib 177 21 construed construe VBN cord-284409-xiyeceib 177 22 as as IN cord-284409-xiyeceib 177 23 a a DT cord-284409-xiyeceib 177 24 potential potential JJ cord-284409-xiyeceib 177 25 conflict conflict NN cord-284409-xiyeceib 177 26 of of IN cord-284409-xiyeceib 177 27 interest interest NN cord-284409-xiyeceib 177 28 . . . cord-284409-xiyeceib 177 29 _SP