id	author	title	date	pages	extension	mime	words	sentences	flesch	summary	cache	txt
cord-342391-arp07mck	Magiorkinis, G.	Phylogenetic analysis of the full‐length SARS‐CoV sequences: Evidence for phylogenetic discordance in three genomic regions	2004-09-14		.txt	text/plain	1901	81	49	Evidence based on Bayesian scanning plots and phylogenetic analysis using maximum likelihood (ML) and Bayesian methods indicates that SARS‐CoV, for the largest part of the genome (∼80%), is more closely related to Group II coronaviruses sequences, whereas in three regions in the ORF1ab gene it shows no apparent similarity to any of the previously characterized groups of coronaviruses. Bayesian scanning and subsequent phylogenetic analysis revealed that the SARS-CoV sequence was related more closely to Group II than the other two groups in most of its genome (e.g., at the region spanning amino acid positions 4309-5612 in reference to the murine hepatitis virus ORF1ab gene) (Fig. 1) . This clustering was supported by high quartet puzzling support values and high posterior probabilities under various substitution models, thus suggesting that 80% of the SARS-CoV genomic sequence is related more closely to coronaviruses Group II than any other members of this family.	./cache/cord-342391-arp07mck.txt	./txt/cord-342391-arp07mck.txt