id sid tid token lemma pos cord-256201-vjzfzshh 1 1 key key JJ cord-256201-vjzfzshh 1 2 : : : cord-256201-vjzfzshh 1 3 cord-256201-vjzfzshh cord-256201-vjzfzshh . cord-256201-vjzfzshh 2 1 authors author NNS cord-256201-vjzfzshh 2 2 : : : cord-256201-vjzfzshh 2 3 Pereira Pereira NNP cord-256201-vjzfzshh 2 4 - - HYPH cord-256201-vjzfzshh 2 5 Gómez Gómez NNP cord-256201-vjzfzshh 2 6 , , , cord-256201-vjzfzshh 2 7 Marianoel Marianoel NNP cord-256201-vjzfzshh 2 8 ; ; : cord-256201-vjzfzshh 2 9 Sanjuán Sanjuán NNP cord-256201-vjzfzshh 2 10 , , , cord-256201-vjzfzshh 2 11 Rafael Rafael NNP cord-256201-vjzfzshh 2 12 title title NN cord-256201-vjzfzshh 2 13 : : : cord-256201-vjzfzshh 2 14 Effect effect NN cord-256201-vjzfzshh 2 15 of of IN cord-256201-vjzfzshh 2 16 mismatch mismatch NN cord-256201-vjzfzshh 2 17 repair repair NN cord-256201-vjzfzshh 2 18 on on IN cord-256201-vjzfzshh 2 19 the the DT cord-256201-vjzfzshh 2 20 mutation mutation NN cord-256201-vjzfzshh 2 21 rate rate NN cord-256201-vjzfzshh 2 22 of of IN cord-256201-vjzfzshh 2 23 bacteriophage bacteriophage NN cord-256201-vjzfzshh 2 24 ϕX174 ϕx174 CD cord-256201-vjzfzshh 3 1 date date NN cord-256201-vjzfzshh 3 2 : : : cord-256201-vjzfzshh 3 3 2015 2015 CD cord-256201-vjzfzshh 3 4 - - HYPH cord-256201-vjzfzshh 3 5 09 09 CD cord-256201-vjzfzshh 3 6 - - SYM cord-256201-vjzfzshh 3 7 10 10 CD cord-256201-vjzfzshh 3 8 journal journal NN cord-256201-vjzfzshh 3 9 : : : cord-256201-vjzfzshh 4 1 Virus Virus NNP cord-256201-vjzfzshh 4 2 Evol Evol NNP cord-256201-vjzfzshh 4 3 DOI DOI NNP cord-256201-vjzfzshh 4 4 : : : cord-256201-vjzfzshh 5 1 10.1093 10.1093 CD cord-256201-vjzfzshh 5 2 / / SYM cord-256201-vjzfzshh 5 3 ve ve VBD cord-256201-vjzfzshh 5 4 / / SYM cord-256201-vjzfzshh 5 5 vev010 vev010 NNP cord-256201-vjzfzshh 5 6 sha sha NNP cord-256201-vjzfzshh 5 7 : : : cord-256201-vjzfzshh 5 8 e1fb56142974ef2ac7aaf635398b7f0382ab9645 e1fb56142974ef2ac7aaf635398b7f0382ab9645 NNP cord-256201-vjzfzshh 5 9 doc_id doc_id NNP cord-256201-vjzfzshh 5 10 : : : cord-256201-vjzfzshh 5 11 256201 256201 CD cord-256201-vjzfzshh 5 12 cord_uid cord_uid NNS cord-256201-vjzfzshh 5 13 : : : cord-256201-vjzfzshh 6 1 vjzfzshh vjzfzshh NNP cord-256201-vjzfzshh 6 2 Viral Viral NNP cord-256201-vjzfzshh 6 3 mutation mutation NN cord-256201-vjzfzshh 6 4 rates rate NNS cord-256201-vjzfzshh 6 5 vary vary VBP cord-256201-vjzfzshh 6 6 widely widely RB cord-256201-vjzfzshh 6 7 in in IN cord-256201-vjzfzshh 6 8 nature nature NN cord-256201-vjzfzshh 6 9 , , , cord-256201-vjzfzshh 6 10 yet yet CC cord-256201-vjzfzshh 6 11 the the DT cord-256201-vjzfzshh 6 12 mechanistic mechanistic JJ cord-256201-vjzfzshh 6 13 and and CC cord-256201-vjzfzshh 6 14 evolutionary evolutionary JJ cord-256201-vjzfzshh 6 15 determinants determinant NNS cord-256201-vjzfzshh 6 16 of of IN cord-256201-vjzfzshh 6 17 this this DT cord-256201-vjzfzshh 6 18 variability variability NN cord-256201-vjzfzshh 6 19 remain remain VBP cord-256201-vjzfzshh 6 20 unclear unclear JJ cord-256201-vjzfzshh 6 21 . . . cord-256201-vjzfzshh 7 1 Small small JJ cord-256201-vjzfzshh 7 2 DNA dna NN cord-256201-vjzfzshh 7 3 viruses virus NNS cord-256201-vjzfzshh 7 4 mutate mutate VBP cord-256201-vjzfzshh 7 5 orders order NNS cord-256201-vjzfzshh 7 6 of of IN cord-256201-vjzfzshh 7 7 magnitude magnitude NN cord-256201-vjzfzshh 7 8 faster fast RBR cord-256201-vjzfzshh 7 9 than than IN cord-256201-vjzfzshh 7 10 their -PRON- PRP$ cord-256201-vjzfzshh 7 11 hosts host NNS cord-256201-vjzfzshh 7 12 despite despite IN cord-256201-vjzfzshh 7 13 using use VBG cord-256201-vjzfzshh 7 14 host host NN cord-256201-vjzfzshh 7 15 - - HYPH cord-256201-vjzfzshh 7 16 encoded encode VBN cord-256201-vjzfzshh 7 17 polymerases polymerase NNS cord-256201-vjzfzshh 7 18 for for IN cord-256201-vjzfzshh 7 19 replication replication NN cord-256201-vjzfzshh 7 20 , , , cord-256201-vjzfzshh 7 21 which which WDT cord-256201-vjzfzshh 7 22 suggests suggest VBZ cord-256201-vjzfzshh 7 23 these these DT cord-256201-vjzfzshh 7 24 viruses virus NNS cord-256201-vjzfzshh 7 25 may may MD cord-256201-vjzfzshh 7 26 avoid avoid VB cord-256201-vjzfzshh 7 27 post post JJ cord-256201-vjzfzshh 7 28 - - JJ cord-256201-vjzfzshh 7 29 replicative replicative JJ cord-256201-vjzfzshh 7 30 repair repair NN cord-256201-vjzfzshh 7 31 . . . cord-256201-vjzfzshh 8 1 Supporting support VBG cord-256201-vjzfzshh 8 2 this this DT cord-256201-vjzfzshh 8 3 , , , cord-256201-vjzfzshh 8 4 the the DT cord-256201-vjzfzshh 8 5 genome genome NN cord-256201-vjzfzshh 8 6 of of IN cord-256201-vjzfzshh 8 7 bacteriophage bacteriophage NN cord-256201-vjzfzshh 8 8 ϕX174 ϕX174 NFP cord-256201-vjzfzshh 8 9 is be VBZ cord-256201-vjzfzshh 8 10 completely completely RB cord-256201-vjzfzshh 8 11 devoid devoid JJ cord-256201-vjzfzshh 8 12 of of IN cord-256201-vjzfzshh 8 13 GATC GATC NNP cord-256201-vjzfzshh 8 14 sequence sequence NN cord-256201-vjzfzshh 8 15 motifs motif NNS cord-256201-vjzfzshh 8 16 , , , cord-256201-vjzfzshh 8 17 which which WDT cord-256201-vjzfzshh 8 18 are be VBP cord-256201-vjzfzshh 8 19 required require VBN cord-256201-vjzfzshh 8 20 for for IN cord-256201-vjzfzshh 8 21 methyl methyl NN cord-256201-vjzfzshh 8 22 - - HYPH cord-256201-vjzfzshh 8 23 directed direct VBN cord-256201-vjzfzshh 8 24 mismatch mismatch NN cord-256201-vjzfzshh 8 25 repair repair NN cord-256201-vjzfzshh 8 26 in in IN cord-256201-vjzfzshh 8 27 Escherichia Escherichia NNP cord-256201-vjzfzshh 8 28 coli coli NNS cord-256201-vjzfzshh 8 29 . . . cord-256201-vjzfzshh 9 1 Here here RB cord-256201-vjzfzshh 9 2 , , , cord-256201-vjzfzshh 9 3 we -PRON- PRP cord-256201-vjzfzshh 9 4 show show VBP cord-256201-vjzfzshh 9 5 that that IN cord-256201-vjzfzshh 9 6 restoration restoration NN cord-256201-vjzfzshh 9 7 of of IN cord-256201-vjzfzshh 9 8 the the DT cord-256201-vjzfzshh 9 9 randomly randomly RB cord-256201-vjzfzshh 9 10 expected expect VBN cord-256201-vjzfzshh 9 11 number number NN cord-256201-vjzfzshh 9 12 of of IN cord-256201-vjzfzshh 9 13 GATC GATC NNP cord-256201-vjzfzshh 9 14 sites site NNS cord-256201-vjzfzshh 9 15 leads lead VBZ cord-256201-vjzfzshh 9 16 to to IN cord-256201-vjzfzshh 9 17 an an DT cord-256201-vjzfzshh 9 18 eightfold eightfold JJ cord-256201-vjzfzshh 9 19 reduction reduction NN cord-256201-vjzfzshh 9 20 in in IN cord-256201-vjzfzshh 9 21 the the DT cord-256201-vjzfzshh 9 22 rate rate NN cord-256201-vjzfzshh 9 23 of of IN cord-256201-vjzfzshh 9 24 spontaneous spontaneous JJ cord-256201-vjzfzshh 9 25 mutation mutation NN cord-256201-vjzfzshh 9 26 of of IN cord-256201-vjzfzshh 9 27 the the DT cord-256201-vjzfzshh 9 28 phage phage NN cord-256201-vjzfzshh 9 29 , , , cord-256201-vjzfzshh 9 30 without without IN cord-256201-vjzfzshh 9 31 severely severely RB cord-256201-vjzfzshh 9 32 impairing impair VBG cord-256201-vjzfzshh 9 33 its -PRON- PRP$ cord-256201-vjzfzshh 9 34 replicative replicative JJ cord-256201-vjzfzshh 9 35 capacity capacity NN cord-256201-vjzfzshh 9 36 over over IN cord-256201-vjzfzshh 9 37 the the DT cord-256201-vjzfzshh 9 38 short short JJ cord-256201-vjzfzshh 9 39 term term NN cord-256201-vjzfzshh 9 40 . . . cord-256201-vjzfzshh 10 1 However however RB cord-256201-vjzfzshh 10 2 , , , cord-256201-vjzfzshh 10 3 the the DT cord-256201-vjzfzshh 10 4 efficacy efficacy NN cord-256201-vjzfzshh 10 5 of of IN cord-256201-vjzfzshh 10 6 mismatch mismatch NN cord-256201-vjzfzshh 10 7 repair repair NN cord-256201-vjzfzshh 10 8 in in IN cord-256201-vjzfzshh 10 9 the the DT cord-256201-vjzfzshh 10 10 presence presence NN cord-256201-vjzfzshh 10 11 of of IN cord-256201-vjzfzshh 10 12 GATC GATC NNP cord-256201-vjzfzshh 10 13 sites site NNS cord-256201-vjzfzshh 10 14 is be VBZ cord-256201-vjzfzshh 10 15 limited limit VBN cord-256201-vjzfzshh 10 16 by by IN cord-256201-vjzfzshh 10 17 inefficient inefficient JJ cord-256201-vjzfzshh 10 18 methylation methylation NN cord-256201-vjzfzshh 10 19 of of IN cord-256201-vjzfzshh 10 20 the the DT cord-256201-vjzfzshh 10 21 viral viral JJ cord-256201-vjzfzshh 10 22 DNA dna NN cord-256201-vjzfzshh 10 23 . . . cord-256201-vjzfzshh 11 1 Therefore therefore RB cord-256201-vjzfzshh 11 2 , , , cord-256201-vjzfzshh 11 3 both both CC cord-256201-vjzfzshh 11 4 GATC GATC NNP cord-256201-vjzfzshh 11 5 avoidance avoidance NN cord-256201-vjzfzshh 11 6 and and CC cord-256201-vjzfzshh 11 7 DNA dna NN cord-256201-vjzfzshh 11 8 under under IN cord-256201-vjzfzshh 11 9 - - HYPH cord-256201-vjzfzshh 11 10 methylation methylation NN cord-256201-vjzfzshh 11 11 elevate elevate VB cord-256201-vjzfzshh 11 12 the the DT cord-256201-vjzfzshh 11 13 mutation mutation NN cord-256201-vjzfzshh 11 14 rate rate NN cord-256201-vjzfzshh 11 15 of of IN cord-256201-vjzfzshh 11 16 the the DT cord-256201-vjzfzshh 11 17 phage phage NN cord-256201-vjzfzshh 11 18 relative relative JJ cord-256201-vjzfzshh 11 19 to to IN cord-256201-vjzfzshh 11 20 that that DT cord-256201-vjzfzshh 11 21 of of IN cord-256201-vjzfzshh 11 22 the the DT cord-256201-vjzfzshh 11 23 host host NN cord-256201-vjzfzshh 11 24 . . . cord-256201-vjzfzshh 12 1 We -PRON- PRP cord-256201-vjzfzshh 12 2 also also RB cord-256201-vjzfzshh 12 3 found find VBD cord-256201-vjzfzshh 12 4 that that IN cord-256201-vjzfzshh 12 5 the the DT cord-256201-vjzfzshh 12 6 effects effect NNS cord-256201-vjzfzshh 12 7 of of IN cord-256201-vjzfzshh 12 8 GATC GATC NNP cord-256201-vjzfzshh 12 9 sites site NNS cord-256201-vjzfzshh 12 10 on on IN cord-256201-vjzfzshh 12 11 the the DT cord-256201-vjzfzshh 12 12 phage phage NN cord-256201-vjzfzshh 12 13 mutation mutation NN cord-256201-vjzfzshh 12 14 rate rate NN cord-256201-vjzfzshh 12 15 vary vary VBP cord-256201-vjzfzshh 12 16 extensively extensively RB cord-256201-vjzfzshh 12 17 depending depend VBG cord-256201-vjzfzshh 12 18 on on IN cord-256201-vjzfzshh 12 19 their -PRON- PRP$ cord-256201-vjzfzshh 12 20 specific specific JJ cord-256201-vjzfzshh 12 21 location location NN cord-256201-vjzfzshh 12 22 within within IN cord-256201-vjzfzshh 12 23 the the DT cord-256201-vjzfzshh 12 24 phage phage NN cord-256201-vjzfzshh 12 25 genome genome NN cord-256201-vjzfzshh 12 26 . . . cord-256201-vjzfzshh 13 1 Finally finally RB cord-256201-vjzfzshh 13 2 , , , cord-256201-vjzfzshh 13 3 the the DT cord-256201-vjzfzshh 13 4 mutation mutation NN cord-256201-vjzfzshh 13 5 rate rate NN cord-256201-vjzfzshh 13 6 reduction reduction NN cord-256201-vjzfzshh 13 7 afforded afford VBN cord-256201-vjzfzshh 13 8 by by IN cord-256201-vjzfzshh 13 9 GATC GATC NNP cord-256201-vjzfzshh 13 10 sites site NNS cord-256201-vjzfzshh 13 11 is be VBZ cord-256201-vjzfzshh 13 12 fully fully RB cord-256201-vjzfzshh 13 13 reverted revert VBN cord-256201-vjzfzshh 13 14 under under IN cord-256201-vjzfzshh 13 15 stress stress NN cord-256201-vjzfzshh 13 16 conditions condition NNS cord-256201-vjzfzshh 13 17 , , , cord-256201-vjzfzshh 13 18 which which WDT cord-256201-vjzfzshh 13 19 up up RB cord-256201-vjzfzshh 13 20 - - HYPH cord-256201-vjzfzshh 13 21 regulate regulate VB cord-256201-vjzfzshh 13 22 repair repair NN cord-256201-vjzfzshh 13 23 pathways pathway NNS cord-256201-vjzfzshh 13 24 and and CC cord-256201-vjzfzshh 13 25 expression expression NN cord-256201-vjzfzshh 13 26 of of IN cord-256201-vjzfzshh 13 27 error error NN cord-256201-vjzfzshh 13 28 - - HYPH cord-256201-vjzfzshh 13 29 prone prone JJ cord-256201-vjzfzshh 13 30 host host NN cord-256201-vjzfzshh 13 31 polymerases polymerase NNS cord-256201-vjzfzshh 13 32 such such JJ cord-256201-vjzfzshh 13 33 as as IN cord-256201-vjzfzshh 13 34 heat heat NN cord-256201-vjzfzshh 13 35 and and CC cord-256201-vjzfzshh 13 36 treatment treatment NN cord-256201-vjzfzshh 13 37 with with IN cord-256201-vjzfzshh 13 38 the the DT cord-256201-vjzfzshh 13 39 base base NN cord-256201-vjzfzshh 13 40 analog analog NN cord-256201-vjzfzshh 13 41 5-fluorouracil 5-fluorouracil CD cord-256201-vjzfzshh 13 42 , , , cord-256201-vjzfzshh 13 43 suggesting suggest VBG cord-256201-vjzfzshh 13 44 that that IN cord-256201-vjzfzshh 13 45 access access NN cord-256201-vjzfzshh 13 46 to to IN cord-256201-vjzfzshh 13 47 repair repair NN cord-256201-vjzfzshh 13 48 renders render VBZ cord-256201-vjzfzshh 13 49 the the DT cord-256201-vjzfzshh 13 50 phage phage NN cord-256201-vjzfzshh 13 51 sensitive sensitive JJ cord-256201-vjzfzshh 13 52 to to IN cord-256201-vjzfzshh 13 53 stress stress NN cord-256201-vjzfzshh 13 54 - - HYPH cord-256201-vjzfzshh 13 55 induced induce VBN cord-256201-vjzfzshh 13 56 mutagenesis mutagenesis NN cord-256201-vjzfzshh 13 57 . . . cord-256201-vjzfzshh 14 1 Mutation mutation NN cord-256201-vjzfzshh 14 2 is be VBZ cord-256201-vjzfzshh 14 3 the the DT cord-256201-vjzfzshh 14 4 ultimate ultimate JJ cord-256201-vjzfzshh 14 5 source source NN cord-256201-vjzfzshh 14 6 of of IN cord-256201-vjzfzshh 14 7 genetic genetic JJ cord-256201-vjzfzshh 14 8 variation variation NN cord-256201-vjzfzshh 14 9 and and CC cord-256201-vjzfzshh 14 10 , , , cord-256201-vjzfzshh 14 11 therefore therefore RB cord-256201-vjzfzshh 14 12 , , , cord-256201-vjzfzshh 14 13 a a DT cord-256201-vjzfzshh 14 14 central central JJ cord-256201-vjzfzshh 14 15 evolutionary evolutionary JJ cord-256201-vjzfzshh 14 16 process process NN cord-256201-vjzfzshh 14 17 . . . cord-256201-vjzfzshh 15 1 Although although IN cord-256201-vjzfzshh 15 2 mutations mutation NNS cord-256201-vjzfzshh 15 3 are be VBP cord-256201-vjzfzshh 15 4 required require VBN cord-256201-vjzfzshh 15 5 for for IN cord-256201-vjzfzshh 15 6 adaptation adaptation NN cord-256201-vjzfzshh 15 7 , , , cord-256201-vjzfzshh 15 8 the the DT cord-256201-vjzfzshh 15 9 short short JJ cord-256201-vjzfzshh 15 10 - - HYPH cord-256201-vjzfzshh 15 11 term term NN cord-256201-vjzfzshh 15 12 deleteriousness deleteriousness NN cord-256201-vjzfzshh 15 13 of of IN cord-256201-vjzfzshh 15 14 most most JJS cord-256201-vjzfzshh 15 15 spontaneous spontaneous JJ cord-256201-vjzfzshh 15 16 mutations mutation NNS cord-256201-vjzfzshh 15 17 should should MD cord-256201-vjzfzshh 15 18 generally generally RB cord-256201-vjzfzshh 15 19 favor favor VB cord-256201-vjzfzshh 15 20 low low JJ cord-256201-vjzfzshh 15 21 mutation mutation NN cord-256201-vjzfzshh 15 22 rates rate NNS cord-256201-vjzfzshh 15 23 ( ( -LRB- cord-256201-vjzfzshh 15 24 Sniegowski Sniegowski NNP cord-256201-vjzfzshh 15 25 et et NNP cord-256201-vjzfzshh 15 26 al al NNP cord-256201-vjzfzshh 15 27 . . . cord-256201-vjzfzshh 15 28 2000 2000 CD cord-256201-vjzfzshh 15 29 ) ) -RRB- cord-256201-vjzfzshh 15 30 . . . cord-256201-vjzfzshh 16 1 In in IN cord-256201-vjzfzshh 16 2 theory theory NN cord-256201-vjzfzshh 16 3 , , , cord-256201-vjzfzshh 16 4 the the DT cord-256201-vjzfzshh 16 5 balance balance NN cord-256201-vjzfzshh 16 6 between between IN cord-256201-vjzfzshh 16 7 these these DT cord-256201-vjzfzshh 16 8 short short JJ cord-256201-vjzfzshh 16 9 - - HYPH cord-256201-vjzfzshh 16 10 term term NN cord-256201-vjzfzshh 16 11 costs cost NNS cord-256201-vjzfzshh 16 12 and and CC cord-256201-vjzfzshh 16 13 the the DT cord-256201-vjzfzshh 16 14 long long JJ cord-256201-vjzfzshh 16 15 - - HYPH cord-256201-vjzfzshh 16 16 term term NN cord-256201-vjzfzshh 16 17 benefits benefit NNS cord-256201-vjzfzshh 16 18 for for IN cord-256201-vjzfzshh 16 19 adaptation adaptation NN cord-256201-vjzfzshh 16 20 should should MD cord-256201-vjzfzshh 16 21 produce produce VB cord-256201-vjzfzshh 16 22 an an DT cord-256201-vjzfzshh 16 23 evolutionarily evolutionarily RB cord-256201-vjzfzshh 16 24 optimal optimal JJ cord-256201-vjzfzshh 16 25 , , , cord-256201-vjzfzshh 16 26 intermediate intermediate JJ cord-256201-vjzfzshh 16 27 mutation mutation NN cord-256201-vjzfzshh 16 28 rate rate NN cord-256201-vjzfzshh 16 29 which which WDT cord-256201-vjzfzshh 16 30 is be VBZ cord-256201-vjzfzshh 16 31 dependent dependent JJ cord-256201-vjzfzshh 16 32 on on IN cord-256201-vjzfzshh 16 33 selection selection NN cord-256201-vjzfzshh 16 34 strength strength NN cord-256201-vjzfzshh 16 35 ( ( -LRB- cord-256201-vjzfzshh 16 36 Orr Orr NNP cord-256201-vjzfzshh 16 37 2000 2000 CD cord-256201-vjzfzshh 16 38 ; ; : cord-256201-vjzfzshh 16 39 Johnson Johnson NNP cord-256201-vjzfzshh 16 40 and and CC cord-256201-vjzfzshh 16 41 Barton Barton NNP cord-256201-vjzfzshh 16 42 2002 2002 CD cord-256201-vjzfzshh 16 43 ) ) -RRB- cord-256201-vjzfzshh 16 44 . . . cord-256201-vjzfzshh 17 1 Other other JJ cord-256201-vjzfzshh 17 2 factors factor NNS cord-256201-vjzfzshh 17 3 can can MD cord-256201-vjzfzshh 17 4 also also RB cord-256201-vjzfzshh 17 5 determine determine VB cord-256201-vjzfzshh 17 6 mutation mutation NN cord-256201-vjzfzshh 17 7 rate rate NN cord-256201-vjzfzshh 17 8 evolution evolution NN cord-256201-vjzfzshh 17 9 , , , cord-256201-vjzfzshh 17 10 including include VBG cord-256201-vjzfzshh 17 11 the the DT cord-256201-vjzfzshh 17 12 costs cost NNS cord-256201-vjzfzshh 17 13 of of IN cord-256201-vjzfzshh 17 14 maintaining maintain VBG cord-256201-vjzfzshh 17 15 mechanisms mechanism NNS cord-256201-vjzfzshh 17 16 of of IN cord-256201-vjzfzshh 17 17 replication replication NN cord-256201-vjzfzshh 17 18 fidelity fidelity NN cord-256201-vjzfzshh 17 19 , , , cord-256201-vjzfzshh 17 20 population population NN cord-256201-vjzfzshh 17 21 size size NN cord-256201-vjzfzshh 17 22 , , , cord-256201-vjzfzshh 17 23 and and CC cord-256201-vjzfzshh 17 24 structure structure NN cord-256201-vjzfzshh 17 25 , , , cord-256201-vjzfzshh 17 26 or or CC cord-256201-vjzfzshh 17 27 the the DT cord-256201-vjzfzshh 17 28 topology topology NN cord-256201-vjzfzshh 17 29 of of IN cord-256201-vjzfzshh 17 30 the the DT cord-256201-vjzfzshh 17 31 fitness fitness NN cord-256201-vjzfzshh 17 32 landscape landscape NN cord-256201-vjzfzshh 17 33 among among IN cord-256201-vjzfzshh 17 34 others other NNS cord-256201-vjzfzshh 17 35 ( ( -LRB- cord-256201-vjzfzshh 17 36 André André NNP cord-256201-vjzfzshh 17 37 and and CC cord-256201-vjzfzshh 17 38 Godelle Godelle NNP cord-256201-vjzfzshh 17 39 2006 2006 CD cord-256201-vjzfzshh 17 40 ; ; : cord-256201-vjzfzshh 17 41 Clune Clune NNP cord-256201-vjzfzshh 17 42 et et NNP cord-256201-vjzfzshh 17 43 al al NNP cord-256201-vjzfzshh 17 44 . . NNP cord-256201-vjzfzshh 17 45 2008 2008 CD cord-256201-vjzfzshh 17 46 ; ; : cord-256201-vjzfzshh 17 47 Jiang Jiang NNP cord-256201-vjzfzshh 17 48 et et FW cord-256201-vjzfzshh 17 49 al al NNP cord-256201-vjzfzshh 17 50 . . NNP cord-256201-vjzfzshh 17 51 2010 2010 CD cord-256201-vjzfzshh 17 52 ; ; : cord-256201-vjzfzshh 17 53 Lynch Lynch NNP cord-256201-vjzfzshh 17 54 2011 2011 CD cord-256201-vjzfzshh 17 55 ; ; : cord-256201-vjzfzshh 17 56 Sung Sung NNP cord-256201-vjzfzshh 17 57 et et NNP cord-256201-vjzfzshh 17 58 al al NNP cord-256201-vjzfzshh 17 59 . . NNP cord-256201-vjzfzshh 17 60 2012 2012 CD cord-256201-vjzfzshh 17 61 ) ) -RRB- cord-256201-vjzfzshh 17 62 . . . cord-256201-vjzfzshh 18 1 Despite despite IN cord-256201-vjzfzshh 18 2 this this DT cord-256201-vjzfzshh 18 3 variety variety NN cord-256201-vjzfzshh 18 4 of of IN cord-256201-vjzfzshh 18 5 factors factor NNS cord-256201-vjzfzshh 18 6 , , , cord-256201-vjzfzshh 18 7 it -PRON- PRP cord-256201-vjzfzshh 18 8 has have VBZ cord-256201-vjzfzshh 18 9 been be VBN cord-256201-vjzfzshh 18 10 noted note VBN cord-256201-vjzfzshh 18 11 that that IN cord-256201-vjzfzshh 18 12 genomic genomic JJ cord-256201-vjzfzshh 18 13 mutation mutation NN cord-256201-vjzfzshh 18 14 rates rate NNS cord-256201-vjzfzshh 18 15 stay stay VBP cord-256201-vjzfzshh 18 16 remarkably remarkably RB cord-256201-vjzfzshh 18 17 constant constant JJ cord-256201-vjzfzshh 18 18 among among IN cord-256201-vjzfzshh 18 19 DNA dna NN cord-256201-vjzfzshh 18 20 viruses virus NNS cord-256201-vjzfzshh 18 21 , , , cord-256201-vjzfzshh 18 22 bacteria bacteria NNS cord-256201-vjzfzshh 18 23 , , , cord-256201-vjzfzshh 18 24 and and CC cord-256201-vjzfzshh 18 25 unicellular unicellular JJ cord-256201-vjzfzshh 18 26 eukaryotes eukaryote NNS cord-256201-vjzfzshh 18 27 ( ( -LRB- cord-256201-vjzfzshh 18 28 Drake Drake NNP cord-256201-vjzfzshh 18 29 1991 1991 CD cord-256201-vjzfzshh 18 30 ; ; : cord-256201-vjzfzshh 18 31 Drake Drake NNP cord-256201-vjzfzshh 18 32 et et NNP cord-256201-vjzfzshh 18 33 al al NNP cord-256201-vjzfzshh 18 34 . . NNP cord-256201-vjzfzshh 18 35 1998 1998 CD cord-256201-vjzfzshh 18 36 ) ) -RRB- cord-256201-vjzfzshh 18 37 . . . cord-256201-vjzfzshh 19 1 As as IN cord-256201-vjzfzshh 19 2 a a DT cord-256201-vjzfzshh 19 3 consequence consequence NN cord-256201-vjzfzshh 19 4 , , , cord-256201-vjzfzshh 19 5 pernucleotide pernucleotide NN cord-256201-vjzfzshh 19 6 rates rate NNS cord-256201-vjzfzshh 19 7 vary vary VBP cord-256201-vjzfzshh 19 8 by by IN cord-256201-vjzfzshh 19 9 10,000-fold 10,000-fold CD cord-256201-vjzfzshh 19 10 and and CC cord-256201-vjzfzshh 19 11 inversely inversely RB cord-256201-vjzfzshh 19 12 with with IN cord-256201-vjzfzshh 19 13 genome genome NN cord-256201-vjzfzshh 19 14 size size NN cord-256201-vjzfzshh 19 15 , , , cord-256201-vjzfzshh 19 16 from from IN cord-256201-vjzfzshh 19 17 10 10 CD cord-256201-vjzfzshh 19 18 -6 -6 CD cord-256201-vjzfzshh 19 19 to to IN cord-256201-vjzfzshh 19 20 10 10 CD cord-256201-vjzfzshh 19 21 -10 -10 NN cord-256201-vjzfzshh 19 22 mutations mutation NNS cord-256201-vjzfzshh 19 23 per per IN cord-256201-vjzfzshh 19 24 nucleotide nucleotide NN cord-256201-vjzfzshh 19 25 per per IN cord-256201-vjzfzshh 19 26 round round NN cord-256201-vjzfzshh 19 27 of of IN cord-256201-vjzfzshh 19 28 copying copying NN cord-256201-vjzfzshh 19 29 ( ( -LRB- cord-256201-vjzfzshh 19 30 m m NNP cord-256201-vjzfzshh 19 31 / / SYM cord-256201-vjzfzshh 19 32 n n NN cord-256201-vjzfzshh 19 33 / / SYM cord-256201-vjzfzshh 19 34 r r NN cord-256201-vjzfzshh 19 35 ) ) -RRB- cord-256201-vjzfzshh 19 36 ( ( -LRB- cord-256201-vjzfzshh 19 37 Lynch Lynch NNP cord-256201-vjzfzshh 19 38 2010 2010 CD cord-256201-vjzfzshh 19 39 ) ) -RRB- cord-256201-vjzfzshh 19 40 . . . cord-256201-vjzfzshh 20 1 How how WRB cord-256201-vjzfzshh 20 2 evolutionary evolutionary JJ cord-256201-vjzfzshh 20 3 forces force NNS cord-256201-vjzfzshh 20 4 have have VBP cord-256201-vjzfzshh 20 5 shaped shape VBN cord-256201-vjzfzshh 20 6 this this DT cord-256201-vjzfzshh 20 7 inverse inverse JJ cord-256201-vjzfzshh 20 8 relationship relationship NN cord-256201-vjzfzshh 20 9 in in IN cord-256201-vjzfzshh 20 10 such such JJ cord-256201-vjzfzshh 20 11 widely widely RB cord-256201-vjzfzshh 20 12 different different JJ cord-256201-vjzfzshh 20 13 microbial microbial JJ cord-256201-vjzfzshh 20 14 systems system NNS cord-256201-vjzfzshh 20 15 and and CC cord-256201-vjzfzshh 20 16 which which WDT cord-256201-vjzfzshh 20 17 molecular molecular JJ cord-256201-vjzfzshh 20 18 mechanisms mechanism NNS cord-256201-vjzfzshh 20 19 allow allow VBP cord-256201-vjzfzshh 20 20 for for IN cord-256201-vjzfzshh 20 21 this this DT cord-256201-vjzfzshh 20 22 mutation mutation NN cord-256201-vjzfzshh 20 23 rate rate NN cord-256201-vjzfzshh 20 24 variation variation NN cord-256201-vjzfzshh 20 25 remain remain VBP cord-256201-vjzfzshh 20 26 poorly poorly RB cord-256201-vjzfzshh 20 27 understood understand VBN cord-256201-vjzfzshh 20 28 questions question NNS cord-256201-vjzfzshh 20 29 . . . cord-256201-vjzfzshh 21 1 For for IN cord-256201-vjzfzshh 21 2 DNA dna NN cord-256201-vjzfzshh 21 3 viruses virus NNS cord-256201-vjzfzshh 21 4 , , , cord-256201-vjzfzshh 21 5 mutation mutation NN cord-256201-vjzfzshh 21 6 rates rate NNS cord-256201-vjzfzshh 21 7 range range VBP cord-256201-vjzfzshh 21 8 from from IN cord-256201-vjzfzshh 21 9 10 10 CD cord-256201-vjzfzshh 21 10 -8 -8 NNPS cord-256201-vjzfzshh 21 11 m m NNP cord-256201-vjzfzshh 21 12 / / SYM cord-256201-vjzfzshh 21 13 n n NNP cord-256201-vjzfzshh 21 14 / / SYM cord-256201-vjzfzshh 21 15 r r NN cord-256201-vjzfzshh 21 16 in in IN cord-256201-vjzfzshh 21 17 double double RB cord-256201-vjzfzshh 21 18 - - HYPH cord-256201-vjzfzshh 21 19 stranded stranded JJ cord-256201-vjzfzshh 21 20 ( ( -LRB- cord-256201-vjzfzshh 21 21 ds ds NNP cord-256201-vjzfzshh 21 22 ) ) -RRB- cord-256201-vjzfzshh 21 23 DNA dna NN cord-256201-vjzfzshh 21 24 viruses virus NNS cord-256201-vjzfzshh 21 25 such such JJ cord-256201-vjzfzshh 21 26 as as IN cord-256201-vjzfzshh 21 27 herpes herpe NNS cord-256201-vjzfzshh 21 28 virus virus NN cord-256201-vjzfzshh 21 29 to to IN cord-256201-vjzfzshh 21 30 10 10 CD cord-256201-vjzfzshh 21 31 -6 -6 NNP cord-256201-vjzfzshh 21 32 m m NNP cord-256201-vjzfzshh 21 33 / / SYM cord-256201-vjzfzshh 21 34 n n NNP cord-256201-vjzfzshh 21 35 / / SYM cord-256201-vjzfzshh 21 36 r r NN cord-256201-vjzfzshh 21 37 in in IN cord-256201-vjzfzshh 21 38 single single RB cord-256201-vjzfzshh 21 39 - - HYPH cord-256201-vjzfzshh 21 40 stranded stranded JJ cord-256201-vjzfzshh 21 41 ( ( -LRB- cord-256201-vjzfzshh 21 42 ss ss NNP cord-256201-vjzfzshh 21 43 ) ) -RRB- cord-256201-vjzfzshh 21 44 DNA dna NN cord-256201-vjzfzshh 21 45 viruses virus NNS cord-256201-vjzfzshh 21 46 such such JJ cord-256201-vjzfzshh 21 47 as as IN cord-256201-vjzfzshh 21 48 bacteriophage bacteriophage NN cord-256201-vjzfzshh 21 49 /X174 /X174 NFP cord-256201-vjzfzshh 21 50 , , , cord-256201-vjzfzshh 21 51 whereas whereas IN cord-256201-vjzfzshh 21 52 these these DT cord-256201-vjzfzshh 21 53 rates rate NNS cord-256201-vjzfzshh 21 54 range range VBP cord-256201-vjzfzshh 21 55 from from IN cord-256201-vjzfzshh 21 56 10 10 CD cord-256201-vjzfzshh 21 57 -6 -6 CD cord-256201-vjzfzshh 21 58 to to IN cord-256201-vjzfzshh 21 59 10 10 CD cord-256201-vjzfzshh 21 60 -4 -4 NNS cord-256201-vjzfzshh 21 61 m m NNP cord-256201-vjzfzshh 21 62 / / SYM cord-256201-vjzfzshh 21 63 n n NN cord-256201-vjzfzshh 21 64 / / SYM cord-256201-vjzfzshh 21 65 r r NN cord-256201-vjzfzshh 21 66 in in IN cord-256201-vjzfzshh 21 67 RNA RNA NNP cord-256201-vjzfzshh 21 68 viruses virus NNS cord-256201-vjzfzshh 22 1 ( ( -LRB- cord-256201-vjzfzshh 22 2 Sanjuá Sanjuá NNP cord-256201-vjzfzshh 22 3 n n NNP cord-256201-vjzfzshh 22 4 et et NNP cord-256201-vjzfzshh 22 5 al al NNP cord-256201-vjzfzshh 22 6 . . NNP cord-256201-vjzfzshh 22 7 2010 2010 CD cord-256201-vjzfzshh 22 8 ) ) -RRB- cord-256201-vjzfzshh 22 9 . . . cord-256201-vjzfzshh 23 1 A a DT cord-256201-vjzfzshh 23 2 primary primary JJ cord-256201-vjzfzshh 23 3 determinant determinant NN cord-256201-vjzfzshh 23 4 of of IN cord-256201-vjzfzshh 23 5 viral viral JJ cord-256201-vjzfzshh 23 6 mutation mutation NN cord-256201-vjzfzshh 23 7 rates rate NNS cord-256201-vjzfzshh 23 8 is be VBZ cord-256201-vjzfzshh 23 9 replication replication NN cord-256201-vjzfzshh 23 10 fidelity fidelity NN cord-256201-vjzfzshh 23 11 , , , cord-256201-vjzfzshh 23 12 and and CC cord-256201-vjzfzshh 23 13 polymerase polymerase NN cord-256201-vjzfzshh 23 14 variants variant NNS cord-256201-vjzfzshh 23 15 with with IN cord-256201-vjzfzshh 23 16 altered alter VBN cord-256201-vjzfzshh 23 17 base base NN cord-256201-vjzfzshh 23 18 - - HYPH cord-256201-vjzfzshh 23 19 selection selection NN cord-256201-vjzfzshh 23 20 specificities specificity NNS cord-256201-vjzfzshh 23 21 have have VBP cord-256201-vjzfzshh 23 22 been be VBN cord-256201-vjzfzshh 23 23 described describe VBN cord-256201-vjzfzshh 23 24 in in IN cord-256201-vjzfzshh 23 25 several several JJ cord-256201-vjzfzshh 23 26 RNA RNA NNP cord-256201-vjzfzshh 23 27 viruses virus NNS cord-256201-vjzfzshh 23 28 including include VBG cord-256201-vjzfzshh 23 29 picornaviruses picornavirus NNS cord-256201-vjzfzshh 23 30 , , , cord-256201-vjzfzshh 23 31 alphaviruses alphaviruses NNP cord-256201-vjzfzshh 23 32 , , , cord-256201-vjzfzshh 23 33 and and CC cord-256201-vjzfzshh 23 34 retroviruses retrovirus NNS cord-256201-vjzfzshh 23 35 . . . cord-256201-vjzfzshh 24 1 However however RB cord-256201-vjzfzshh 24 2 , , , cord-256201-vjzfzshh 24 3 fidelity fidelity NN cord-256201-vjzfzshh 24 4 variants variant NNS cord-256201-vjzfzshh 24 5 that that WDT cord-256201-vjzfzshh 24 6 are be VBP cord-256201-vjzfzshh 24 7 not not RB cord-256201-vjzfzshh 24 8 lethal lethal JJ cord-256201-vjzfzshh 24 9 typically typically RB cord-256201-vjzfzshh 24 10 alter alter VB cord-256201-vjzfzshh 24 11 mutation mutation NN cord-256201-vjzfzshh 24 12 rates rate NNS cord-256201-vjzfzshh 24 13 only only RB cord-256201-vjzfzshh 24 14 slightly slightly RB cord-256201-vjzfzshh 24 15 ( ( -LRB- cord-256201-vjzfzshh 24 16 Pfeiffer Pfeiffer NNP cord-256201-vjzfzshh 24 17 and and CC cord-256201-vjzfzshh 24 18 Kirkegaard Kirkegaard NNP cord-256201-vjzfzshh 24 19 2003 2003 CD cord-256201-vjzfzshh 24 20 ; ; : cord-256201-vjzfzshh 24 21 Arias Arias NNP cord-256201-vjzfzshh 24 22 et et FW cord-256201-vjzfzshh 24 23 al al NNP cord-256201-vjzfzshh 24 24 . . NNP cord-256201-vjzfzshh 24 25 2008 2008 CD cord-256201-vjzfzshh 24 26 ; ; : cord-256201-vjzfzshh 24 27 Mené Mené NNP cord-256201-vjzfzshh 24 28 ndez ndez NNP cord-256201-vjzfzshh 24 29 - - HYPH cord-256201-vjzfzshh 24 30 Arias Arias NNP cord-256201-vjzfzshh 24 31 2009 2009 CD cord-256201-vjzfzshh 24 32 ; ; : cord-256201-vjzfzshh 24 33 Coffey Coffey NNP cord-256201-vjzfzshh 24 34 et et NNP cord-256201-vjzfzshh 24 35 al al NNP cord-256201-vjzfzshh 24 36 . . NNP cord-256201-vjzfzshh 24 37 2011 2011 CD cord-256201-vjzfzshh 24 38 ; ; : cord-256201-vjzfzshh 24 39 Graci Graci NNP cord-256201-vjzfzshh 24 40 et et NNP cord-256201-vjzfzshh 24 41 al al NNP cord-256201-vjzfzshh 24 42 . . NNP cord-256201-vjzfzshh 24 43 2012 2012 CD cord-256201-vjzfzshh 24 44 ) ) -RRB- cord-256201-vjzfzshh 24 45 . . . cord-256201-vjzfzshh 25 1 The the DT cord-256201-vjzfzshh 25 2 presence presence NN cord-256201-vjzfzshh 25 3 of of IN cord-256201-vjzfzshh 25 4 3 3 CD cord-256201-vjzfzshh 25 5 exonuclease exonuclease NN cord-256201-vjzfzshh 25 6 proofreading proofreading NN cord-256201-vjzfzshh 25 7 has have VBZ cord-256201-vjzfzshh 25 8 a a DT cord-256201-vjzfzshh 25 9 stronger strong JJR cord-256201-vjzfzshh 25 10 effect effect NN cord-256201-vjzfzshh 25 11 on on IN cord-256201-vjzfzshh 25 12 viral viral JJ cord-256201-vjzfzshh 25 13 replication replication NN cord-256201-vjzfzshh 25 14 fidelity fidelity NN cord-256201-vjzfzshh 25 15 . . . cord-256201-vjzfzshh 26 1 All all DT cord-256201-vjzfzshh 26 2 RNAdependent RNAdependent NNP cord-256201-vjzfzshh 26 3 polymerases polymerases VBP cord-256201-vjzfzshh 26 4 except except IN cord-256201-vjzfzshh 26 5 those those DT cord-256201-vjzfzshh 26 6 of of IN cord-256201-vjzfzshh 26 7 coronaviruses coronaviruse NNS cord-256201-vjzfzshh 26 8 lack lack VBP cord-256201-vjzfzshh 26 9 3 3 CD cord-256201-vjzfzshh 26 10 ' ' '' cord-256201-vjzfzshh 26 11 exonuclease exonuclease NN cord-256201-vjzfzshh 26 12 activity activity NN cord-256201-vjzfzshh 26 13 , , , cord-256201-vjzfzshh 26 14 as as IN cord-256201-vjzfzshh 26 15 opposed oppose VBN cord-256201-vjzfzshh 26 16 to to IN cord-256201-vjzfzshh 26 17 virus virus NN cord-256201-vjzfzshh 26 18 - - HYPH cord-256201-vjzfzshh 26 19 encoded encode VBN cord-256201-vjzfzshh 26 20 DNA dna NN cord-256201-vjzfzshh 26 21 polymerases polymerase NNS cord-256201-vjzfzshh 26 22 , , , cord-256201-vjzfzshh 26 23 therefore therefore RB cord-256201-vjzfzshh 26 24 providing provide VBG cord-256201-vjzfzshh 26 25 a a DT cord-256201-vjzfzshh 26 26 clear clear JJ cord-256201-vjzfzshh 26 27 basis basis NN cord-256201-vjzfzshh 26 28 for for IN cord-256201-vjzfzshh 26 29 the the DT cord-256201-vjzfzshh 26 30 higher high JJR cord-256201-vjzfzshh 26 31 mutation mutation NN cord-256201-vjzfzshh 26 32 rates rate NNS cord-256201-vjzfzshh 26 33 of of IN cord-256201-vjzfzshh 26 34 RNA RNA NNP cord-256201-vjzfzshh 26 35 viruses virus NNS cord-256201-vjzfzshh 26 36 compared compare VBN cord-256201-vjzfzshh 26 37 with with IN cord-256201-vjzfzshh 26 38 DNA dna NN cord-256201-vjzfzshh 26 39 viruses virus NNS cord-256201-vjzfzshh 26 40 ( ( -LRB- cord-256201-vjzfzshh 26 41 Roberts Roberts NNP cord-256201-vjzfzshh 26 42 , , , cord-256201-vjzfzshh 26 43 Bebenek Bebenek NNP cord-256201-vjzfzshh 26 44 , , , cord-256201-vjzfzshh 26 45 and and CC cord-256201-vjzfzshh 26 46 Kunkel Kunkel NNP cord-256201-vjzfzshh 26 47 1988 1988 CD cord-256201-vjzfzshh 26 48 ; ; : cord-256201-vjzfzshh 26 49 Steinhauer Steinhauer NNP cord-256201-vjzfzshh 26 50 , , , cord-256201-vjzfzshh 26 51 Domingo Domingo NNP cord-256201-vjzfzshh 26 52 , , , cord-256201-vjzfzshh 26 53 and and CC cord-256201-vjzfzshh 26 54 Holland Holland NNP cord-256201-vjzfzshh 26 55 1992 1992 CD cord-256201-vjzfzshh 26 56 ; ; : cord-256201-vjzfzshh 26 57 Mené Mené NNP cord-256201-vjzfzshh 26 58 ndez ndez NNP cord-256201-vjzfzshh 26 59 - - HYPH cord-256201-vjzfzshh 26 60 Arias Arias NNP cord-256201-vjzfzshh 26 61 2009 2009 CD cord-256201-vjzfzshh 26 62 ; ; : cord-256201-vjzfzshh 26 63 Denison Denison NNP cord-256201-vjzfzshh 26 64 et et NNP cord-256201-vjzfzshh 26 65 al al NNP cord-256201-vjzfzshh 26 66 . . NNP cord-256201-vjzfzshh 26 67 2011 2011 CD cord-256201-vjzfzshh 26 68 ; ; : cord-256201-vjzfzshh 26 69 Smith Smith NNP cord-256201-vjzfzshh 26 70 et et NNP cord-256201-vjzfzshh 26 71 al al NNP cord-256201-vjzfzshh 26 72 . . NNP cord-256201-vjzfzshh 26 73 2013 2013 CD cord-256201-vjzfzshh 26 74 ) ) -RRB- cord-256201-vjzfzshh 26 75 . . . cord-256201-vjzfzshh 27 1 In in IN cord-256201-vjzfzshh 27 2 addition addition NN cord-256201-vjzfzshh 27 3 to to TO cord-256201-vjzfzshh 27 4 polymerase polymerase VB cord-256201-vjzfzshh 27 5 fidelity fidelity NN cord-256201-vjzfzshh 27 6 , , , cord-256201-vjzfzshh 27 7 in in IN cord-256201-vjzfzshh 27 8 DNA dna NN cord-256201-vjzfzshh 27 9 viruses virus NNS cord-256201-vjzfzshh 27 10 , , , cord-256201-vjzfzshh 27 11 mutation mutation NN cord-256201-vjzfzshh 27 12 rates rate NNS cord-256201-vjzfzshh 27 13 should should MD cord-256201-vjzfzshh 27 14 be be VB cord-256201-vjzfzshh 27 15 determined determine VBN cord-256201-vjzfzshh 27 16 by by IN cord-256201-vjzfzshh 27 17 their -PRON- PRP$ cord-256201-vjzfzshh 27 18 ability ability NN cord-256201-vjzfzshh 27 19 to to TO cord-256201-vjzfzshh 27 20 access access VB cord-256201-vjzfzshh 27 21 postreplicative postreplicative NNP cord-256201-vjzfzshh 27 22 repair repair NN cord-256201-vjzfzshh 27 23 . . . cord-256201-vjzfzshh 28 1 In in IN cord-256201-vjzfzshh 28 2 ssDNA ssdna JJ cord-256201-vjzfzshh 28 3 bacteriophages bacteriophage NNS cord-256201-vjzfzshh 28 4 such such JJ cord-256201-vjzfzshh 28 5 as as IN cord-256201-vjzfzshh 28 6 /X174 /X174 NNP cord-256201-vjzfzshh 28 7 or or CC cord-256201-vjzfzshh 28 8 m13 m13 CD cord-256201-vjzfzshh 28 9 , , , cord-256201-vjzfzshh 28 10 replication replication NN cord-256201-vjzfzshh 28 11 is be VBZ cord-256201-vjzfzshh 28 12 carried carry VBN cord-256201-vjzfzshh 28 13 out out RP cord-256201-vjzfzshh 28 14 by by IN cord-256201-vjzfzshh 28 15 the the DT cord-256201-vjzfzshh 28 16 Escherichia Escherichia NNP cord-256201-vjzfzshh 28 17 coli coli NNS cord-256201-vjzfzshh 28 18 DNA DNA NNP cord-256201-vjzfzshh 28 19 III iii CD cord-256201-vjzfzshh 28 20 holoenzyme holoenzyme NNS cord-256201-vjzfzshh 28 21 , , , cord-256201-vjzfzshh 28 22 which which WDT cord-256201-vjzfzshh 28 23 exhibits exhibit VBZ cord-256201-vjzfzshh 28 24 similar similar JJ cord-256201-vjzfzshh 28 25 fidelity fidelity NN cord-256201-vjzfzshh 28 26 in in IN cord-256201-vjzfzshh 28 27 phage phage NN cord-256201-vjzfzshh 28 28 and and CC cord-256201-vjzfzshh 28 29 host host NN cord-256201-vjzfzshh 28 30 templates template NNS cord-256201-vjzfzshh 28 31 ( ( -LRB- cord-256201-vjzfzshh 28 32 Fersht Fersht NNP cord-256201-vjzfzshh 28 33 1979 1979 CD cord-256201-vjzfzshh 28 34 ; ; : cord-256201-vjzfzshh 28 35 Fersht Fersht NNP cord-256201-vjzfzshh 28 36 and and CC cord-256201-vjzfzshh 28 37 Knill Knill NNP cord-256201-vjzfzshh 28 38 - - HYPH cord-256201-vjzfzshh 28 39 Jones Jones NNP cord-256201-vjzfzshh 28 40 1981 1981 CD cord-256201-vjzfzshh 28 41 ) ) -RRB- cord-256201-vjzfzshh 28 42 . . . cord-256201-vjzfzshh 29 1 However however RB cord-256201-vjzfzshh 29 2 , , , cord-256201-vjzfzshh 29 3 these these DT cord-256201-vjzfzshh 29 4 phages phage NNS cord-256201-vjzfzshh 29 5 show show VBP cord-256201-vjzfzshh 29 6 a a DT cord-256201-vjzfzshh 29 7 mutation mutation NN cord-256201-vjzfzshh 29 8 rate rate NN cord-256201-vjzfzshh 29 9 approximately approximately RB cord-256201-vjzfzshh 29 10 three three CD cord-256201-vjzfzshh 29 11 orders order NNS cord-256201-vjzfzshh 29 12 of of IN cord-256201-vjzfzshh 29 13 magnitude magnitude NN cord-256201-vjzfzshh 29 14 higher high JJR cord-256201-vjzfzshh 29 15 than than IN cord-256201-vjzfzshh 29 16 the the DT cord-256201-vjzfzshh 29 17 host host NN cord-256201-vjzfzshh 29 18 ( ( -LRB- cord-256201-vjzfzshh 29 19 Wickner Wickner NNP cord-256201-vjzfzshh 29 20 and and CC cord-256201-vjzfzshh 29 21 Hurwitz Hurwitz NNP cord-256201-vjzfzshh 29 22 1974 1974 CD cord-256201-vjzfzshh 29 23 ; ; : cord-256201-vjzfzshh 29 24 Raney Raney NNP cord-256201-vjzfzshh 29 25 , , , cord-256201-vjzfzshh 29 26 Delongchamp Delongchamp NNP cord-256201-vjzfzshh 29 27 , , , cord-256201-vjzfzshh 29 28 and and CC cord-256201-vjzfzshh 29 29 Valentine Valentine NNP cord-256201-vjzfzshh 29 30 2004 2004 CD cord-256201-vjzfzshh 29 31 ; ; : cord-256201-vjzfzshh 29 32 Cuevas Cuevas NNP cord-256201-vjzfzshh 29 33 , , , cord-256201-vjzfzshh 29 34 Duffy Duffy NNP cord-256201-vjzfzshh 29 35 , , , cord-256201-vjzfzshh 29 36 and and CC cord-256201-vjzfzshh 29 37 Sanjuá Sanjuá NNP cord-256201-vjzfzshh 29 38 n n NNP cord-256201-vjzfzshh 29 39 2009 2009 CD cord-256201-vjzfzshh 29 40 ) ) -RRB- cord-256201-vjzfzshh 29 41 . . . cord-256201-vjzfzshh 30 1 The the DT cord-256201-vjzfzshh 30 2 high high JJ cord-256201-vjzfzshh 30 3 variability variability NN cord-256201-vjzfzshh 30 4 and and CC cord-256201-vjzfzshh 30 5 fast fast JJ cord-256201-vjzfzshh 30 6 evolution evolution NN cord-256201-vjzfzshh 30 7 of of IN cord-256201-vjzfzshh 30 8 small small JJ cord-256201-vjzfzshh 30 9 eukaryotic eukaryotic JJ cord-256201-vjzfzshh 30 10 DNA dna NN cord-256201-vjzfzshh 30 11 viruses virus NNS cord-256201-vjzfzshh 30 12 such such JJ cord-256201-vjzfzshh 30 13 as as IN cord-256201-vjzfzshh 30 14 parvoviruses parvovirus NNS cord-256201-vjzfzshh 30 15 and and CC cord-256201-vjzfzshh 30 16 polyomaviruses polyomaviruse NNS cord-256201-vjzfzshh 30 17 similarly similarly RB cord-256201-vjzfzshh 30 18 suggests suggest VBZ cord-256201-vjzfzshh 30 19 elevated elevated JJ cord-256201-vjzfzshh 30 20 rates rate NNS cord-256201-vjzfzshh 30 21 of of IN cord-256201-vjzfzshh 30 22 spontaneous spontaneous JJ cord-256201-vjzfzshh 30 23 mutation mutation NN cord-256201-vjzfzshh 30 24 ( ( -LRB- cord-256201-vjzfzshh 30 25 Duffy Duffy NNP cord-256201-vjzfzshh 30 26 , , , cord-256201-vjzfzshh 30 27 Shackelton Shackelton NNP cord-256201-vjzfzshh 30 28 , , , cord-256201-vjzfzshh 30 29 and and CC cord-256201-vjzfzshh 30 30 Holmes Holmes NNP cord-256201-vjzfzshh 30 31 2008 2008 CD cord-256201-vjzfzshh 30 32 ) ) -RRB- cord-256201-vjzfzshh 30 33 . . . cord-256201-vjzfzshh 31 1 The the DT cord-256201-vjzfzshh 31 2 efficiency efficiency NN cord-256201-vjzfzshh 31 3 of of IN cord-256201-vjzfzshh 31 4 post post JJ cord-256201-vjzfzshh 31 5 - - JJ cord-256201-vjzfzshh 31 6 replicative replicative JJ cord-256201-vjzfzshh 31 7 repair repair NN cord-256201-vjzfzshh 31 8 can can MD cord-256201-vjzfzshh 31 9 be be VB cord-256201-vjzfzshh 31 10 higher high JJR cord-256201-vjzfzshh 31 11 than than IN cord-256201-vjzfzshh 31 12 99 99 CD cord-256201-vjzfzshh 31 13 per per IN cord-256201-vjzfzshh 31 14 cent cent NN cord-256201-vjzfzshh 31 15 ( ( -LRB- cord-256201-vjzfzshh 31 16 Fijalkowska Fijalkowska NNP cord-256201-vjzfzshh 31 17 , , , cord-256201-vjzfzshh 31 18 Schaaper Schaaper NNP cord-256201-vjzfzshh 31 19 , , , cord-256201-vjzfzshh 31 20 and and CC cord-256201-vjzfzshh 31 21 Jonczyk Jonczyk NNP cord-256201-vjzfzshh 31 22 2012 2012 CD cord-256201-vjzfzshh 31 23 ) ) -RRB- cord-256201-vjzfzshh 31 24 . . . cord-256201-vjzfzshh 32 1 In in IN cord-256201-vjzfzshh 32 2 E. E. NNP cord-256201-vjzfzshh 32 3 coli coli NNS cord-256201-vjzfzshh 32 4 , , , cord-256201-vjzfzshh 32 5 strand strand NN cord-256201-vjzfzshh 32 6 - - HYPH cord-256201-vjzfzshh 32 7 specific specific JJ cord-256201-vjzfzshh 32 8 bidirectional bidirectional JJ cord-256201-vjzfzshh 32 9 methyl methyl NN cord-256201-vjzfzshh 32 10 - - HYPH cord-256201-vjzfzshh 32 11 directed direct VBN cord-256201-vjzfzshh 32 12 mismatch mismatch NN cord-256201-vjzfzshh 32 13 repair repair NN cord-256201-vjzfzshh 32 14 ( ( -LRB- cord-256201-vjzfzshh 32 15 MMR MMR NNP cord-256201-vjzfzshh 32 16 ) ) -RRB- cord-256201-vjzfzshh 32 17 is be VBZ cord-256201-vjzfzshh 32 18 performed perform VBN cord-256201-vjzfzshh 32 19 by by IN cord-256201-vjzfzshh 32 20 the the DT cord-256201-vjzfzshh 32 21 Dam Dam NNP cord-256201-vjzfzshh 32 22 / / SYM cord-256201-vjzfzshh 32 23 MutHLS muthls NN cord-256201-vjzfzshh 32 24 system system NN cord-256201-vjzfzshh 32 25 ( ( -LRB- cord-256201-vjzfzshh 32 26 Jiricny Jiricny NNP cord-256201-vjzfzshh 32 27 2013 2013 CD cord-256201-vjzfzshh 32 28 ) ) -RRB- cord-256201-vjzfzshh 32 29 . . . cord-256201-vjzfzshh 33 1 Point point NN cord-256201-vjzfzshh 33 2 mutations mutation NNS cord-256201-vjzfzshh 33 3 or or CC cord-256201-vjzfzshh 33 4 small small JJ cord-256201-vjzfzshh 33 5 insertion insertion NN cord-256201-vjzfzshh 33 6 / / SYM cord-256201-vjzfzshh 33 7 deletion deletion NN cord-256201-vjzfzshh 33 8 loops loop NNS cord-256201-vjzfzshh 33 9 are be VBP cord-256201-vjzfzshh 33 10 recognized recognize VBN cord-256201-vjzfzshh 33 11 by by IN cord-256201-vjzfzshh 33 12 MutS MutS NNP cord-256201-vjzfzshh 33 13 , , , cord-256201-vjzfzshh 33 14 which which WDT cord-256201-vjzfzshh 33 15 interacts interact VBZ cord-256201-vjzfzshh 33 16 with with IN cord-256201-vjzfzshh 33 17 MutL MutL NNP cord-256201-vjzfzshh 33 18 , , , cord-256201-vjzfzshh 33 19 leading lead VBG cord-256201-vjzfzshh 33 20 to to IN cord-256201-vjzfzshh 33 21 activation activation NN cord-256201-vjzfzshh 33 22 of of IN cord-256201-vjzfzshh 33 23 the the DT cord-256201-vjzfzshh 33 24 MutH MutH NNP cord-256201-vjzfzshh 33 25 endonuclease endonuclease NN cord-256201-vjzfzshh 33 26 . . . cord-256201-vjzfzshh 34 1 The the DT cord-256201-vjzfzshh 34 2 latter latter NN cord-256201-vjzfzshh 34 3 recognizes recognize VBZ cord-256201-vjzfzshh 34 4 the the DT cord-256201-vjzfzshh 34 5 parental parental JJ cord-256201-vjzfzshh 34 6 strand strand NN cord-256201-vjzfzshh 34 7 by by IN cord-256201-vjzfzshh 34 8 the the DT cord-256201-vjzfzshh 34 9 presence presence NN cord-256201-vjzfzshh 34 10 of of IN cord-256201-vjzfzshh 34 11 a a DT cord-256201-vjzfzshh 34 12 methyl methyl NN cord-256201-vjzfzshh 34 13 group group NN cord-256201-vjzfzshh 34 14 in in IN cord-256201-vjzfzshh 34 15 the the DT cord-256201-vjzfzshh 34 16 adenosine adenosine NN cord-256201-vjzfzshh 34 17 of of IN cord-256201-vjzfzshh 34 18 a a DT cord-256201-vjzfzshh 34 19 GATC GATC NNP cord-256201-vjzfzshh 34 20 sequence sequence NN cord-256201-vjzfzshh 34 21 motif motif NN cord-256201-vjzfzshh 34 22 located locate VBN cord-256201-vjzfzshh 34 23 on on IN cord-256201-vjzfzshh 34 24 either either DT cord-256201-vjzfzshh 34 25 side side NN cord-256201-vjzfzshh 34 26 of of IN cord-256201-vjzfzshh 34 27 the the DT cord-256201-vjzfzshh 34 28 mismatch mismatch NN cord-256201-vjzfzshh 34 29 , , , cord-256201-vjzfzshh 34 30 which which WDT cord-256201-vjzfzshh 34 31 has have VBZ cord-256201-vjzfzshh 34 32 been be VBN cord-256201-vjzfzshh 34 33 previously previously RB cord-256201-vjzfzshh 34 34 added add VBN cord-256201-vjzfzshh 34 35 by by IN cord-256201-vjzfzshh 34 36 Dam Dam NNP cord-256201-vjzfzshh 34 37 methylase methylase NN cord-256201-vjzfzshh 34 38 . . . cord-256201-vjzfzshh 35 1 MutH MutH NNP cord-256201-vjzfzshh 35 2 then then RB cord-256201-vjzfzshh 35 3 cleaves cleave VBZ cord-256201-vjzfzshh 35 4 the the DT cord-256201-vjzfzshh 35 5 non non JJ cord-256201-vjzfzshh 35 6 - - JJ cord-256201-vjzfzshh 35 7 methylated methylated JJ cord-256201-vjzfzshh 35 8 daughter daughter NN cord-256201-vjzfzshh 35 9 strand strand NN cord-256201-vjzfzshh 35 10 , , , cord-256201-vjzfzshh 35 11 which which WDT cord-256201-vjzfzshh 35 12 is be VBZ cord-256201-vjzfzshh 35 13 degraded degrade VBN cord-256201-vjzfzshh 35 14 and and CC cord-256201-vjzfzshh 35 15 re re VBN cord-256201-vjzfzshh 35 16 - - JJ cord-256201-vjzfzshh 35 17 synthesized synthesize VBN cord-256201-vjzfzshh 35 18 ( ( -LRB- cord-256201-vjzfzshh 35 19 Modrich Modrich NNP cord-256201-vjzfzshh 35 20 and and CC cord-256201-vjzfzshh 35 21 Lahue Lahue NNP cord-256201-vjzfzshh 35 22 1996 1996 CD cord-256201-vjzfzshh 35 23 ; ; : cord-256201-vjzfzshh 35 24 Marti Marti NNP cord-256201-vjzfzshh 35 25 , , , cord-256201-vjzfzshh 35 26 Kunz Kunz NNP cord-256201-vjzfzshh 35 27 , , , cord-256201-vjzfzshh 35 28 and and CC cord-256201-vjzfzshh 35 29 Fleck Fleck NNP cord-256201-vjzfzshh 35 30 2002 2002 CD cord-256201-vjzfzshh 35 31 ; ; : cord-256201-vjzfzshh 35 32 Schofield Schofield NNP cord-256201-vjzfzshh 35 33 and and CC cord-256201-vjzfzshh 35 34 Hsieh Hsieh NNP cord-256201-vjzfzshh 35 35 2003 2003 CD cord-256201-vjzfzshh 35 36 ; ; : cord-256201-vjzfzshh 35 37 Li Li NNP cord-256201-vjzfzshh 35 38 2008 2008 CD cord-256201-vjzfzshh 35 39 ; ; : cord-256201-vjzfzshh 35 40 Fukui Fukui NNP cord-256201-vjzfzshh 35 41 2010 2010 CD cord-256201-vjzfzshh 35 42 ) ) -RRB- cord-256201-vjzfzshh 35 43 . . . cord-256201-vjzfzshh 36 1 Strikingly strikingly RB cord-256201-vjzfzshh 36 2 , , , cord-256201-vjzfzshh 36 3 though though RB cord-256201-vjzfzshh 36 4 , , , cord-256201-vjzfzshh 36 5 the the DT cord-256201-vjzfzshh 36 6 5.4 5.4 CD cord-256201-vjzfzshh 36 7 kb kb NNP cord-256201-vjzfzshh 36 8 genome genome NN cord-256201-vjzfzshh 36 9 of of IN cord-256201-vjzfzshh 36 10 bacteriophage bacteriophage NN cord-256201-vjzfzshh 36 11 /X174 /X174 , cord-256201-vjzfzshh 36 12 contains contain VBZ cord-256201-vjzfzshh 36 13 no no DT cord-256201-vjzfzshh 36 14 GATC GATC NNP cord-256201-vjzfzshh 36 15 sites site NNS cord-256201-vjzfzshh 36 16 , , , cord-256201-vjzfzshh 36 17 whereas whereas IN cord-256201-vjzfzshh 36 18 the the DT cord-256201-vjzfzshh 36 19 randomly randomly RB cord-256201-vjzfzshh 36 20 expected expect VBN cord-256201-vjzfzshh 36 21 number number NN cord-256201-vjzfzshh 36 22 of of IN cord-256201-vjzfzshh 36 23 such such JJ cord-256201-vjzfzshh 36 24 sequences sequence NNS cord-256201-vjzfzshh 36 25 given give VBN cord-256201-vjzfzshh 36 26 the the DT cord-256201-vjzfzshh 36 27 /X174 /X174 NFP cord-256201-vjzfzshh 36 28 genome genome NN cord-256201-vjzfzshh 36 29 size size NN cord-256201-vjzfzshh 36 30 and and CC cord-256201-vjzfzshh 36 31 base base NN cord-256201-vjzfzshh 36 32 composition composition NN cord-256201-vjzfzshh 36 33 is be VBZ cord-256201-vjzfzshh 36 34 approximately approximately RB cord-256201-vjzfzshh 36 35 20 20 CD cord-256201-vjzfzshh 36 36 . . . cord-256201-vjzfzshh 37 1 By by IN cord-256201-vjzfzshh 37 2 impeding impede VBG cord-256201-vjzfzshh 37 3 Dam Dam NNP cord-256201-vjzfzshh 37 4 methylation methylation NN cord-256201-vjzfzshh 37 5 , , , cord-256201-vjzfzshh 37 6 the the DT cord-256201-vjzfzshh 37 7 lack lack NN cord-256201-vjzfzshh 37 8 of of IN cord-256201-vjzfzshh 37 9 GATC GATC NNP cord-256201-vjzfzshh 37 10 sites site NNS cord-256201-vjzfzshh 37 11 therefore therefore RB cord-256201-vjzfzshh 37 12 avoids avoid VBZ cord-256201-vjzfzshh 37 13 a a DT cord-256201-vjzfzshh 37 14 major major JJ cord-256201-vjzfzshh 37 15 repair repair NN cord-256201-vjzfzshh 37 16 pathway pathway NN cord-256201-vjzfzshh 37 17 . . . cord-256201-vjzfzshh 38 1 However however RB cord-256201-vjzfzshh 38 2 , , , cord-256201-vjzfzshh 38 3 the the DT cord-256201-vjzfzshh 38 4 impact impact NN cord-256201-vjzfzshh 38 5 of of IN cord-256201-vjzfzshh 38 6 GATC GATC NNP cord-256201-vjzfzshh 38 7 motifs motif NNS cord-256201-vjzfzshh 38 8 on on IN cord-256201-vjzfzshh 38 9 the the DT cord-256201-vjzfzshh 38 10 phage phage NN cord-256201-vjzfzshh 38 11 mutation mutation NN cord-256201-vjzfzshh 38 12 rate rate NN cord-256201-vjzfzshh 38 13 is be VBZ cord-256201-vjzfzshh 38 14 still still RB cord-256201-vjzfzshh 38 15 poorly poorly RB cord-256201-vjzfzshh 38 16 understood understand VBN cord-256201-vjzfzshh 38 17 . . . cord-256201-vjzfzshh 39 1 In in IN cord-256201-vjzfzshh 39 2 a a DT cord-256201-vjzfzshh 39 3 previous previous JJ cord-256201-vjzfzshh 39 4 study study NN cord-256201-vjzfzshh 39 5 ( ( -LRB- cord-256201-vjzfzshh 39 6 Cuevas Cuevas NNP cord-256201-vjzfzshh 39 7 , , , cord-256201-vjzfzshh 39 8 Pereira Pereira NNP cord-256201-vjzfzshh 39 9 - - HYPH cord-256201-vjzfzshh 39 10 Gomez Gomez NNP cord-256201-vjzfzshh 39 11 , , , cord-256201-vjzfzshh 39 12 and and CC cord-256201-vjzfzshh 39 13 Sanjuá Sanjuá NNP cord-256201-vjzfzshh 39 14 n n NNP cord-256201-vjzfzshh 39 15 2011 2011 CD cord-256201-vjzfzshh 39 16 ) ) -RRB- cord-256201-vjzfzshh 39 17 , , , cord-256201-vjzfzshh 39 18 we -PRON- PRP cord-256201-vjzfzshh 39 19 introduced introduce VBD cord-256201-vjzfzshh 39 20 four four CD cord-256201-vjzfzshh 39 21 GATC GATC NNP cord-256201-vjzfzshh 39 22 sequence sequence NN cord-256201-vjzfzshh 39 23 motifs motif NNS cord-256201-vjzfzshh 39 24 in in IN cord-256201-vjzfzshh 39 25 the the DT cord-256201-vjzfzshh 39 26 /X174 /X174 NFP cord-256201-vjzfzshh 39 27 genome genome NN cord-256201-vjzfzshh 39 28 and and CC cord-256201-vjzfzshh 39 29 found find VBD cord-256201-vjzfzshh 39 30 no no DT cord-256201-vjzfzshh 39 31 effects effect NNS cord-256201-vjzfzshh 39 32 on on IN cord-256201-vjzfzshh 39 33 mutation mutation NN cord-256201-vjzfzshh 39 34 rate rate NN cord-256201-vjzfzshh 39 35 . . . cord-256201-vjzfzshh 40 1 However however RB cord-256201-vjzfzshh 40 2 , , , cord-256201-vjzfzshh 40 3 by by IN cord-256201-vjzfzshh 40 4 increasing increase VBG cord-256201-vjzfzshh 40 5 the the DT cord-256201-vjzfzshh 40 6 number number NN cord-256201-vjzfzshh 40 7 of of IN cord-256201-vjzfzshh 40 8 GATC GATC NNP cord-256201-vjzfzshh 40 9 motifs motif NNS cord-256201-vjzfzshh 40 10 to to IN cord-256201-vjzfzshh 40 11 seven seven CD cord-256201-vjzfzshh 40 12 , , , cord-256201-vjzfzshh 40 13 we -PRON- PRP cord-256201-vjzfzshh 40 14 obtained obtain VBD cord-256201-vjzfzshh 40 15 a a DT cord-256201-vjzfzshh 40 16 thirtyfold thirtyfold JJ cord-256201-vjzfzshh 40 17 reduction reduction NN cord-256201-vjzfzshh 40 18 in in IN cord-256201-vjzfzshh 40 19 mutation mutation NN cord-256201-vjzfzshh 40 20 rate rate NN cord-256201-vjzfzshh 40 21 . . . cord-256201-vjzfzshh 41 1 Furthermore furthermore RB cord-256201-vjzfzshh 41 2 , , , cord-256201-vjzfzshh 41 3 this this DT cord-256201-vjzfzshh 41 4 effect effect NN cord-256201-vjzfzshh 41 5 was be VBD cord-256201-vjzfzshh 41 6 reverted revert VBN cord-256201-vjzfzshh 41 7 in in IN cord-256201-vjzfzshh 41 8 MMRdeficient mmrdeficient NN cord-256201-vjzfzshh 41 9 mutD mutd NN cord-256201-vjzfzshh 41 10 cells cell NNS cord-256201-vjzfzshh 41 11 , , , cord-256201-vjzfzshh 41 12 indicating indicate VBG cord-256201-vjzfzshh 41 13 that that IN cord-256201-vjzfzshh 41 14 the the DT cord-256201-vjzfzshh 41 15 effects effect NNS cord-256201-vjzfzshh 41 16 of of IN cord-256201-vjzfzshh 41 17 GATC GATC NNP cord-256201-vjzfzshh 41 18 motifs motif NNS cord-256201-vjzfzshh 41 19 were be VBD cord-256201-vjzfzshh 41 20 related relate VBN cord-256201-vjzfzshh 41 21 to to IN cord-256201-vjzfzshh 41 22 MMR MMR NNP cord-256201-vjzfzshh 41 23 . . . cord-256201-vjzfzshh 42 1 Here here RB cord-256201-vjzfzshh 42 2 , , , cord-256201-vjzfzshh 42 3 to to TO cord-256201-vjzfzshh 42 4 better better RB cord-256201-vjzfzshh 42 5 explore explore VB cord-256201-vjzfzshh 42 6 how how WRB cord-256201-vjzfzshh 42 7 MMR MMR NNP cord-256201-vjzfzshh 42 8 avoidance avoidance NN cord-256201-vjzfzshh 42 9 determines determine VBZ cord-256201-vjzfzshh 42 10 the the DT cord-256201-vjzfzshh 42 11 mutation mutation NN cord-256201-vjzfzshh 42 12 rate rate NN cord-256201-vjzfzshh 42 13 of of IN cord-256201-vjzfzshh 42 14 /X174 /X174 . cord-256201-vjzfzshh 43 1 , , , cord-256201-vjzfzshh 43 2 we -PRON- PRP cord-256201-vjzfzshh 43 3 constructed construct VBD cord-256201-vjzfzshh 43 4 a a DT cord-256201-vjzfzshh 43 5 /X174 /x174 CD cord-256201-vjzfzshh 43 6 variant variant NN cord-256201-vjzfzshh 43 7 encoding encode VBG cord-256201-vjzfzshh 43 8 twenty twenty CD cord-256201-vjzfzshh 43 9 randomly randomly RB cord-256201-vjzfzshh 43 10 located locate VBN cord-256201-vjzfzshh 43 11 GATCs gatcs VBP cord-256201-vjzfzshh 43 12 with with IN cord-256201-vjzfzshh 43 13 minimal minimal JJ cord-256201-vjzfzshh 43 14 effects effect NNS cord-256201-vjzfzshh 43 15 on on IN cord-256201-vjzfzshh 43 16 protein protein NN cord-256201-vjzfzshh 43 17 sequence sequence NN cord-256201-vjzfzshh 43 18 . . . cord-256201-vjzfzshh 44 1 The the DT cord-256201-vjzfzshh 44 2 engineered engineer VBN cord-256201-vjzfzshh 44 3 phage phage NN cord-256201-vjzfzshh 44 4 showed show VBD cord-256201-vjzfzshh 44 5 an an DT cord-256201-vjzfzshh 44 6 eightfold eightfold JJ cord-256201-vjzfzshh 44 7 reduction reduction NN cord-256201-vjzfzshh 44 8 in in IN cord-256201-vjzfzshh 44 9 spontaneous spontaneous JJ cord-256201-vjzfzshh 44 10 mutation mutation NN cord-256201-vjzfzshh 44 11 rate rate NN cord-256201-vjzfzshh 44 12 compared compare VBN cord-256201-vjzfzshh 44 13 with with IN cord-256201-vjzfzshh 44 14 the the DT cord-256201-vjzfzshh 44 15 wild wild JJ cord-256201-vjzfzshh 44 16 type type NN cord-256201-vjzfzshh 44 17 ( ( -LRB- cord-256201-vjzfzshh 44 18 WT WT NNP cord-256201-vjzfzshh 44 19 ) ) -RRB- cord-256201-vjzfzshh 44 20 , , , cord-256201-vjzfzshh 44 21 yet yet CC cord-256201-vjzfzshh 44 22 no no DT cord-256201-vjzfzshh 44 23 obvious obvious JJ cord-256201-vjzfzshh 44 24 growth growth NN cord-256201-vjzfzshh 44 25 defects defect NNS cord-256201-vjzfzshh 44 26 under under IN cord-256201-vjzfzshh 44 27 standard standard JJ cord-256201-vjzfzshh 44 28 conditions condition NNS cord-256201-vjzfzshh 44 29 . . . cord-256201-vjzfzshh 45 1 However however RB cord-256201-vjzfzshh 45 2 , , , cord-256201-vjzfzshh 45 3 the the DT cord-256201-vjzfzshh 45 4 efficacy efficacy NN cord-256201-vjzfzshh 45 5 of of IN cord-256201-vjzfzshh 45 6 GATC GATC NNP cord-256201-vjzfzshh 45 7 - - HYPH cord-256201-vjzfzshh 45 8 driven drive VBN cord-256201-vjzfzshh 45 9 MMR MMR NNP cord-256201-vjzfzshh 45 10 was be VBD cord-256201-vjzfzshh 45 11 curtailed curtail VBN cord-256201-vjzfzshh 45 12 by by IN cord-256201-vjzfzshh 45 13 poor poor JJ cord-256201-vjzfzshh 45 14 methylation methylation NN cord-256201-vjzfzshh 45 15 of of IN cord-256201-vjzfzshh 45 16 the the DT cord-256201-vjzfzshh 45 17 phage phage NN cord-256201-vjzfzshh 45 18 DNA dna NN cord-256201-vjzfzshh 45 19 , , , cord-256201-vjzfzshh 45 20 preventing prevent VBG cord-256201-vjzfzshh 45 21 recognition recognition NN cord-256201-vjzfzshh 45 22 of of IN cord-256201-vjzfzshh 45 23 the the DT cord-256201-vjzfzshh 45 24 parental parental JJ cord-256201-vjzfzshh 45 25 strand strand NN cord-256201-vjzfzshh 45 26 . . . cord-256201-vjzfzshh 46 1 Furthermore furthermore RB cord-256201-vjzfzshh 46 2 , , , cord-256201-vjzfzshh 46 3 after after IN cord-256201-vjzfzshh 46 4 constructing construct VBG cord-256201-vjzfzshh 46 5 several several JJ cord-256201-vjzfzshh 46 6 mutants mutant NNS cord-256201-vjzfzshh 46 7 in in IN cord-256201-vjzfzshh 46 8 which which WDT cord-256201-vjzfzshh 46 9 the the DT cord-256201-vjzfzshh 46 10 number number NN cord-256201-vjzfzshh 46 11 and and CC cord-256201-vjzfzshh 46 12 location location NN cord-256201-vjzfzshh 46 13 of of IN cord-256201-vjzfzshh 46 14 GATC GATC NNP cord-256201-vjzfzshh 46 15 sites site NNS cord-256201-vjzfzshh 46 16 were be VBD cord-256201-vjzfzshh 46 17 varied varied JJ cord-256201-vjzfzshh 46 18 , , , cord-256201-vjzfzshh 46 19 we -PRON- PRP cord-256201-vjzfzshh 46 20 found find VBD cord-256201-vjzfzshh 46 21 that that IN cord-256201-vjzfzshh 46 22 their -PRON- PRP$ cord-256201-vjzfzshh 46 23 effects effect NNS cord-256201-vjzfzshh 46 24 on on IN cord-256201-vjzfzshh 46 25 mutation mutation NN cord-256201-vjzfzshh 46 26 rate rate NN cord-256201-vjzfzshh 46 27 were be VBD cord-256201-vjzfzshh 46 28 non non JJ cord-256201-vjzfzshh 46 29 - - JJ cord-256201-vjzfzshh 46 30 additive additive JJ cord-256201-vjzfzshh 46 31 and and CC cord-256201-vjzfzshh 46 32 highly highly RB cord-256201-vjzfzshh 46 33 variable variable JJ cord-256201-vjzfzshh 46 34 , , , cord-256201-vjzfzshh 46 35 with with IN cord-256201-vjzfzshh 46 36 some some DT cord-256201-vjzfzshh 46 37 combinations combination NNS cord-256201-vjzfzshh 46 38 achieving achieve VBG cord-256201-vjzfzshh 46 39 an an DT cord-256201-vjzfzshh 46 40 up up NN cord-256201-vjzfzshh 46 41 to to IN cord-256201-vjzfzshh 46 42 fiftyfold fiftyfold JJ cord-256201-vjzfzshh 46 43 reduction reduction NN cord-256201-vjzfzshh 46 44 in in IN cord-256201-vjzfzshh 46 45 mutation mutation NN cord-256201-vjzfzshh 46 46 rate rate NN cord-256201-vjzfzshh 46 47 while while IN cord-256201-vjzfzshh 46 48 others other NNS cord-256201-vjzfzshh 46 49 having have VBG cord-256201-vjzfzshh 46 50 no no DT cord-256201-vjzfzshh 46 51 effects effect NNS cord-256201-vjzfzshh 46 52 . . . cord-256201-vjzfzshh 47 1 The the DT cord-256201-vjzfzshh 47 2 highest high JJS cord-256201-vjzfzshh 47 3 efficiencies efficiency NNS cord-256201-vjzfzshh 47 4 were be VBD cord-256201-vjzfzshh 47 5 shown show VBN cord-256201-vjzfzshh 47 6 by by IN cord-256201-vjzfzshh 47 7 some some DT cord-256201-vjzfzshh 47 8 intergenic intergenic JJ cord-256201-vjzfzshh 47 9 GATCs GATCs NNPS cord-256201-vjzfzshh 47 10 , , , cord-256201-vjzfzshh 47 11 suggesting suggest VBG cord-256201-vjzfzshh 47 12 that that IN cord-256201-vjzfzshh 47 13 steric steric NN cord-256201-vjzfzshh 47 14 constrains constrain NNS cord-256201-vjzfzshh 47 15 such such JJ cord-256201-vjzfzshh 47 16 as as IN cord-256201-vjzfzshh 47 17 availability availability NN cord-256201-vjzfzshh 47 18 of of IN cord-256201-vjzfzshh 47 19 the the DT cord-256201-vjzfzshh 47 20 DNA dna NN cord-256201-vjzfzshh 47 21 to to IN cord-256201-vjzfzshh 47 22 MutH MutH NNP cord-256201-vjzfzshh 47 23 may may MD cord-256201-vjzfzshh 47 24 be be VB cord-256201-vjzfzshh 47 25 important important JJ cord-256201-vjzfzshh 47 26 for for IN cord-256201-vjzfzshh 47 27 MMR MMR NNP cord-256201-vjzfzshh 47 28 . . . cord-256201-vjzfzshh 48 1 Finally finally RB cord-256201-vjzfzshh 48 2 , , , cord-256201-vjzfzshh 48 3 we -PRON- PRP cord-256201-vjzfzshh 48 4 found find VBD cord-256201-vjzfzshh 48 5 that that IN cord-256201-vjzfzshh 48 6 the the DT cord-256201-vjzfzshh 48 7 mutation mutation NN cord-256201-vjzfzshh 48 8 rate rate NN cord-256201-vjzfzshh 48 9 reduction reduction NN cord-256201-vjzfzshh 48 10 afforded afford VBN cord-256201-vjzfzshh 48 11 by by IN cord-256201-vjzfzshh 48 12 the the DT cord-256201-vjzfzshh 48 13 twenty twenty CD cord-256201-vjzfzshh 48 14 GATC GATC NNP cord-256201-vjzfzshh 48 15 motifs motif NNS cord-256201-vjzfzshh 48 16 was be VBD cord-256201-vjzfzshh 48 17 fully fully RB cord-256201-vjzfzshh 48 18 reverted revert VBN cord-256201-vjzfzshh 48 19 at at IN cord-256201-vjzfzshh 48 20 42 42 CD cord-256201-vjzfzshh 48 21 C C NNP cord-256201-vjzfzshh 48 22 and and CC cord-256201-vjzfzshh 48 23 in in IN cord-256201-vjzfzshh 48 24 the the DT cord-256201-vjzfzshh 48 25 presence presence NN cord-256201-vjzfzshh 48 26 of of IN cord-256201-vjzfzshh 48 27 the the DT cord-256201-vjzfzshh 48 28 base base NN cord-256201-vjzfzshh 48 29 analog analog NN cord-256201-vjzfzshh 48 30 5-fluorouracil 5-fluorouracil CD cord-256201-vjzfzshh 48 31 ( ( -LRB- cord-256201-vjzfzshh 48 32 5-FU 5-fu CD cord-256201-vjzfzshh 48 33 ) ) -RRB- cord-256201-vjzfzshh 48 34 , , , cord-256201-vjzfzshh 48 35 two two CD cord-256201-vjzfzshh 48 36 stress stress NN cord-256201-vjzfzshh 48 37 factors factor NNS cord-256201-vjzfzshh 48 38 that that WDT cord-256201-vjzfzshh 48 39 promote promote VBP cord-256201-vjzfzshh 48 40 overexpression overexpression NN cord-256201-vjzfzshh 48 41 of of IN cord-256201-vjzfzshh 48 42 repair repair NN cord-256201-vjzfzshh 48 43 - - HYPH cord-256201-vjzfzshh 48 44 associated associate VBN cord-256201-vjzfzshh 48 45 error error NN cord-256201-vjzfzshh 48 46 prone prone JJ cord-256201-vjzfzshh 48 47 polymerases polymerase NNS cord-256201-vjzfzshh 48 48 ( ( -LRB- cord-256201-vjzfzshh 48 49 Layton Layton NNP cord-256201-vjzfzshh 48 50 and and CC cord-256201-vjzfzshh 48 51 Foster Foster NNP cord-256201-vjzfzshh 48 52 2005 2005 CD cord-256201-vjzfzshh 48 53 ; ; : cord-256201-vjzfzshh 48 54 Malkova Malkova NNP cord-256201-vjzfzshh 48 55 and and CC cord-256201-vjzfzshh 48 56 Haber Haber NNP cord-256201-vjzfzshh 48 57 2012 2012 CD cord-256201-vjzfzshh 48 58 ) ) -RRB- cord-256201-vjzfzshh 48 59 , , , cord-256201-vjzfzshh 48 60 thus thus RB cord-256201-vjzfzshh 48 61 suggesting suggest VBG cord-256201-vjzfzshh 48 62 that that IN cord-256201-vjzfzshh 48 63 addition addition NN cord-256201-vjzfzshh 48 64 of of IN cord-256201-vjzfzshh 48 65 GATC GATC NNP cord-256201-vjzfzshh 48 66 motifs motif NNS cord-256201-vjzfzshh 48 67 renders render VBZ cord-256201-vjzfzshh 48 68 the the DT cord-256201-vjzfzshh 48 69 phage phage NN cord-256201-vjzfzshh 48 70 sensitive sensitive JJ cord-256201-vjzfzshh 48 71 to to IN cord-256201-vjzfzshh 48 72 stress stress NN cord-256201-vjzfzshh 48 73 - - HYPH cord-256201-vjzfzshh 48 74 induced induce VBN cord-256201-vjzfzshh 48 75 mutagenesis mutagenesis NN cord-256201-vjzfzshh 48 76 . . . cord-256201-vjzfzshh 49 1 The the DT cord-256201-vjzfzshh 49 2 E. E. NNP cord-256201-vjzfzshh 49 3 coli coli NNS cord-256201-vjzfzshh 49 4 C c NN cord-256201-vjzfzshh 49 5 strain strain NN cord-256201-vjzfzshh 49 6 IJ1862 IJ1862 NNP cord-256201-vjzfzshh 49 7 was be VBD cord-256201-vjzfzshh 49 8 obtained obtain VBN cord-256201-vjzfzshh 49 9 from from IN cord-256201-vjzfzshh 49 10 Prof. Prof. NNP cord-256201-vjzfzshh 49 11 James James NNP cord-256201-vjzfzshh 49 12 J. J. NNP cord-256201-vjzfzshh 49 13 Bull Bull NNP cord-256201-vjzfzshh 49 14 . . . cord-256201-vjzfzshh 50 1 The the DT cord-256201-vjzfzshh 50 2 gro87 gro87 CD cord-256201-vjzfzshh 50 3 mutant mutant NN cord-256201-vjzfzshh 50 4 was be VBD cord-256201-vjzfzshh 50 5 provided provide VBN cord-256201-vjzfzshh 50 6 by by IN cord-256201-vjzfzshh 50 7 Prof. Prof. NNP cord-256201-vjzfzshh 50 8 Bentley Bentley NNP cord-256201-vjzfzshh 50 9 A. a. NN cord-256201-vjzfzshh 50 10 Fane Fane NNP cord-256201-vjzfzshh 50 11 ( ( -LRB- cord-256201-vjzfzshh 50 12 University University NNP cord-256201-vjzfzshh 50 13 of of IN cord-256201-vjzfzshh 50 14 Arizona Arizona NNP cord-256201-vjzfzshh 50 15 ) ) -RRB- cord-256201-vjzfzshh 50 16 . . . cord-256201-vjzfzshh 51 1 Bacteriophage bacteriophage NN cord-256201-vjzfzshh 51 2 /X174 /X174 . cord-256201-vjzfzshh 52 1 originally originally RB cord-256201-vjzfzshh 52 2 obtained obtain VBN cord-256201-vjzfzshh 52 3 from from IN cord-256201-vjzfzshh 52 4 Prof. Prof. NNP cord-256201-vjzfzshh 52 5 James James NNP cord-256201-vjzfzshh 52 6 J. J. NNP cord-256201-vjzfzshh 52 7 Bull Bull NNP cord-256201-vjzfzshh 52 8 ( ( -LRB- cord-256201-vjzfzshh 52 9 Texas Texas NNP cord-256201-vjzfzshh 52 10 University University NNP cord-256201-vjzfzshh 52 11 ) ) -RRB- cord-256201-vjzfzshh 52 12 was be VBD cord-256201-vjzfzshh 52 13 adapted adapt VBN cord-256201-vjzfzshh 52 14 to to IN cord-256201-vjzfzshh 52 15 our -PRON- PRP$ cord-256201-vjzfzshh 52 16 laboratory laboratory NN cord-256201-vjzfzshh 52 17 conditions condition NNS cord-256201-vjzfzshh 52 18 by by IN cord-256201-vjzfzshh 52 19 long long JJ cord-256201-vjzfzshh 52 20 - - HYPH cord-256201-vjzfzshh 52 21 term term NN cord-256201-vjzfzshh 52 22 passaging passaging NN cord-256201-vjzfzshh 52 23 in in IN cord-256201-vjzfzshh 52 24 IJ1862 ij1862 NN cord-256201-vjzfzshh 52 25 cells cell NNS cord-256201-vjzfzshh 52 26 ( ( -LRB- cord-256201-vjzfzshh 52 27 Domingo Domingo NNP cord-256201-vjzfzshh 52 28 - - HYPH cord-256201-vjzfzshh 52 29 Calap Calap NNP cord-256201-vjzfzshh 52 30 , , , cord-256201-vjzfzshh 52 31 Cuevas Cuevas NNP cord-256201-vjzfzshh 52 32 , , , cord-256201-vjzfzshh 52 33 and and CC cord-256201-vjzfzshh 52 34 Sanjuá Sanjuá NNP cord-256201-vjzfzshh 52 35 n n NNP cord-256201-vjzfzshh 52 36 2009 2009 CD cord-256201-vjzfzshh 52 37 ) ) -RRB- cord-256201-vjzfzshh 52 38 . . . cord-256201-vjzfzshh 53 1 GATC GATC NNP cord-256201-vjzfzshh 53 2 sites site NNS cord-256201-vjzfzshh 53 3 were be VBD cord-256201-vjzfzshh 53 4 engineered engineer VBN cord-256201-vjzfzshh 53 5 in in IN cord-256201-vjzfzshh 53 6 the the DT cord-256201-vjzfzshh 53 7 genetic genetic JJ cord-256201-vjzfzshh 53 8 background background NN cord-256201-vjzfzshh 53 9 of of IN cord-256201-vjzfzshh 53 10 this this DT cord-256201-vjzfzshh 53 11 adapted adapt VBN cord-256201-vjzfzshh 53 12 virus virus NN cord-256201-vjzfzshh 53 13 , , , cord-256201-vjzfzshh 53 14 here here RB cord-256201-vjzfzshh 53 15 denoted denote VBD cord-256201-vjzfzshh 53 16 the the DT cord-256201-vjzfzshh 53 17 WT WT NNP cord-256201-vjzfzshh 53 18 , , , cord-256201-vjzfzshh 53 19 which which WDT cord-256201-vjzfzshh 53 20 contains contain VBZ cord-256201-vjzfzshh 53 21 no no DT cord-256201-vjzfzshh 53 22 GATCs GATCs NNPS cord-256201-vjzfzshh 53 23 ( ( -LRB- cord-256201-vjzfzshh 53 24 GenBank GenBank NNP cord-256201-vjzfzshh 53 25 accession accession NN cord-256201-vjzfzshh 53 26 GQ153915 gq153915 NN cord-256201-vjzfzshh 53 27 ) ) -RRB- cord-256201-vjzfzshh 53 28 . . . cord-256201-vjzfzshh 54 1 The the DT cord-256201-vjzfzshh 54 2 /X174 /X174 NFP cord-256201-vjzfzshh 54 3 dsDNA dsdna RB cord-256201-vjzfzshh 54 4 replicative replicative JJ cord-256201-vjzfzshh 54 5 form form NN cord-256201-vjzfzshh 54 6 was be VBD cord-256201-vjzfzshh 54 7 purified purify VBN cord-256201-vjzfzshh 54 8 from from IN cord-256201-vjzfzshh 54 9 infected infected JJ cord-256201-vjzfzshh 54 10 cultures culture NNS cord-256201-vjzfzshh 54 11 before before IN cord-256201-vjzfzshh 54 12 lysis lysis NN cord-256201-vjzfzshh 54 13 using use VBG cord-256201-vjzfzshh 54 14 a a DT cord-256201-vjzfzshh 54 15 standard standard JJ cord-256201-vjzfzshh 54 16 miniprep miniprep JJ cord-256201-vjzfzshh 54 17 kit kit NN cord-256201-vjzfzshh 54 18 ( ( -LRB- cord-256201-vjzfzshh 54 19 Macherey Macherey NNP cord-256201-vjzfzshh 54 20 - - HYPH cord-256201-vjzfzshh 54 21 Nagel Nagel NNP cord-256201-vjzfzshh 54 22 ) ) -RRB- cord-256201-vjzfzshh 54 23 , , , cord-256201-vjzfzshh 54 24 and and CC cord-256201-vjzfzshh 54 25 500 500 CD cord-256201-vjzfzshh 54 26 pg pg NN cord-256201-vjzfzshh 54 27 of of IN cord-256201-vjzfzshh 54 28 this this DT cord-256201-vjzfzshh 54 29 DNA DNA NNP cord-256201-vjzfzshh 54 30 were be VBD cord-256201-vjzfzshh 54 31 used use VBN cord-256201-vjzfzshh 54 32 as as IN cord-256201-vjzfzshh 54 33 template template NN cord-256201-vjzfzshh 54 34 for for IN cord-256201-vjzfzshh 54 35 polymerase polymerase NN cord-256201-vjzfzshh 54 36 chain chain NN cord-256201-vjzfzshh 54 37 reaction reaction NN cord-256201-vjzfzshh 54 38 - - HYPH cord-256201-vjzfzshh 54 39 based base VBN cord-256201-vjzfzshh 54 40 mutagenesis mutagenesis NN cord-256201-vjzfzshh 54 41 using use VBG cord-256201-vjzfzshh 54 42 Phusion Phusion NNP cord-256201-vjzfzshh 54 43 high high JJ cord-256201-vjzfzshh 54 44 - - HYPH cord-256201-vjzfzshh 54 45 fidelity fidelity NN cord-256201-vjzfzshh 54 46 DNA dna NN cord-256201-vjzfzshh 54 47 polymerase polymerase NN cord-256201-vjzfzshh 54 48 ( ( -LRB- cord-256201-vjzfzshh 54 49 Thermo Thermo NNP cord-256201-vjzfzshh 54 50 Scientific Scientific NNP cord-256201-vjzfzshh 54 51 ) ) -RRB- cord-256201-vjzfzshh 54 52 and and CC cord-256201-vjzfzshh 54 53 contiguous contiguous JJ cord-256201-vjzfzshh 54 54 , , , cord-256201-vjzfzshh 54 55 divergent divergent JJ cord-256201-vjzfzshh 54 56 , , , cord-256201-vjzfzshh 54 57 5'-phosphorylated 5'-phosphorylated CD cord-256201-vjzfzshh 54 58 primers primer NNS cord-256201-vjzfzshh 54 59 , , , cord-256201-vjzfzshh 54 60 of of IN cord-256201-vjzfzshh 54 61 which which WDT cord-256201-vjzfzshh 54 62 the the DT cord-256201-vjzfzshh 54 63 reverse reverse JJ cord-256201-vjzfzshh 54 64 primer primer NN cord-256201-vjzfzshh 54 65 carried carry VBD cord-256201-vjzfzshh 54 66 the the DT cord-256201-vjzfzshh 54 67 desired desire VBN cord-256201-vjzfzshh 54 68 nucleotide nucleotide JJ cord-256201-vjzfzshh 54 69 substitution substitution NN cord-256201-vjzfzshh 54 70 . . . cord-256201-vjzfzshh 55 1 Polymerase polymerase NN cord-256201-vjzfzshh 55 2 chain chain NN cord-256201-vjzfzshh 55 3 reaction reaction NN cord-256201-vjzfzshh 55 4 products product NNS cord-256201-vjzfzshh 55 5 were be VBD cord-256201-vjzfzshh 55 6 circularized circularize VBN cord-256201-vjzfzshh 55 7 with with IN cord-256201-vjzfzshh 55 8 the the DT cord-256201-vjzfzshh 55 9 Rapid Rapid NNP cord-256201-vjzfzshh 55 10 DNA DNA NNP cord-256201-vjzfzshh 55 11 ligation ligation NN cord-256201-vjzfzshh 55 12 kit kit NN cord-256201-vjzfzshh 55 13 ( ( -LRB- cord-256201-vjzfzshh 55 14 Thermo Thermo NNP cord-256201-vjzfzshh 55 15 Scientific Scientific NNP cord-256201-vjzfzshh 55 16 ) ) -RRB- cord-256201-vjzfzshh 55 17 and and CC cord-256201-vjzfzshh 55 18 used use VBN cord-256201-vjzfzshh 55 19 for for IN cord-256201-vjzfzshh 55 20 transfecting transfecte VBG cord-256201-vjzfzshh 55 21 competent competent JJ cord-256201-vjzfzshh 55 22 IJ1862cells IJ1862cells NNPS cord-256201-vjzfzshh 55 23 by by IN cord-256201-vjzfzshh 55 24 the the DT cord-256201-vjzfzshh 55 25 classical classical JJ cord-256201-vjzfzshh 55 26 heat heat NN cord-256201-vjzfzshh 55 27 - - HYPH cord-256201-vjzfzshh 55 28 shock shock NN cord-256201-vjzfzshh 55 29 method method NN cord-256201-vjzfzshh 55 30 . . . cord-256201-vjzfzshh 56 1 A a DT cord-256201-vjzfzshh 56 2 single single JJ cord-256201-vjzfzshh 56 3 plaque plaque NN cord-256201-vjzfzshh 56 4 was be VBD cord-256201-vjzfzshh 56 5 picked pick VBN cord-256201-vjzfzshh 56 6 , , , cord-256201-vjzfzshh 56 7 resuspended resuspended JJ cord-256201-vjzfzshh 56 8 Lysogeny Lysogeny NNP cord-256201-vjzfzshh 56 9 Broth Broth NNP cord-256201-vjzfzshh 56 10 medium medium NN cord-256201-vjzfzshh 56 11 , , , cord-256201-vjzfzshh 56 12 and and CC cord-256201-vjzfzshh 56 13 stored store VBN cord-256201-vjzfzshh 56 14 at at IN cord-256201-vjzfzshh 56 15 -70 -70 NN cord-256201-vjzfzshh 56 16 C. c. NN cord-256201-vjzfzshh 57 1 The the DT cord-256201-vjzfzshh 57 2 presence presence NN cord-256201-vjzfzshh 57 3 of of IN cord-256201-vjzfzshh 57 4 each each DT cord-256201-vjzfzshh 57 5 substitution substitution NN cord-256201-vjzfzshh 57 6 was be VBD cord-256201-vjzfzshh 57 7 confirmed confirm VBN cord-256201-vjzfzshh 57 8 by by IN cord-256201-vjzfzshh 57 9 Sanger Sanger NNP cord-256201-vjzfzshh 57 10 sequencing sequencing NN cord-256201-vjzfzshh 57 11 . . . cord-256201-vjzfzshh 58 1 This this DT cord-256201-vjzfzshh 58 2 process process NN cord-256201-vjzfzshh 58 3 was be VBD cord-256201-vjzfzshh 58 4 iterated iterate VBN cord-256201-vjzfzshh 58 5 until until IN cord-256201-vjzfzshh 58 6 twenty twenty CD cord-256201-vjzfzshh 58 7 GATC GATC NNP cord-256201-vjzfzshh 58 8 sites site NNS cord-256201-vjzfzshh 58 9 were be VBD cord-256201-vjzfzshh 58 10 introduced introduce VBN cord-256201-vjzfzshh 58 11 . . . cord-256201-vjzfzshh 59 1 Full full JJ cord-256201-vjzfzshh 59 2 - - HYPH cord-256201-vjzfzshh 59 3 length length NN cord-256201-vjzfzshh 59 4 sequencing sequencing NN cord-256201-vjzfzshh 59 5 of of IN cord-256201-vjzfzshh 59 6 the the DT cord-256201-vjzfzshh 59 7 20GATC 20gatc CD cord-256201-vjzfzshh 59 8 virus virus NN cord-256201-vjzfzshh 59 9 was be VBD cord-256201-vjzfzshh 59 10 performed perform VBN cord-256201-vjzfzshh 59 11 to to TO cord-256201-vjzfzshh 59 12 verify verify VB cord-256201-vjzfzshh 59 13 that that IN cord-256201-vjzfzshh 59 14 all all DT cord-256201-vjzfzshh 59 15 mutations mutation NNS cord-256201-vjzfzshh 59 16 were be VBD cord-256201-vjzfzshh 59 17 present present JJ cord-256201-vjzfzshh 59 18 and and CC cord-256201-vjzfzshh 59 19 that that IN cord-256201-vjzfzshh 59 20 no no DT cord-256201-vjzfzshh 59 21 other other JJ cord-256201-vjzfzshh 59 22 changes change NNS cord-256201-vjzfzshh 59 23 were be VBD cord-256201-vjzfzshh 59 24 introduced introduce VBN cord-256201-vjzfzshh 59 25 . . . cord-256201-vjzfzshh 60 1 Each each DT cord-256201-vjzfzshh 60 2 test test NN cord-256201-vjzfzshh 60 3 consisted consist VBD cord-256201-vjzfzshh 60 4 of of IN cord-256201-vjzfzshh 60 5 twenty twenty CD cord-256201-vjzfzshh 60 6 - - HYPH cord-256201-vjzfzshh 60 7 four four CD cord-256201-vjzfzshh 60 8 independent independent JJ cord-256201-vjzfzshh 60 9 0.5 0.5 CD cord-256201-vjzfzshh 60 10 ml ml NN cord-256201-vjzfzshh 60 11 IJ1862 ij1862 NN cord-256201-vjzfzshh 60 12 cultures culture NNS cord-256201-vjzfzshh 60 13 inoculated inoculate VBN cord-256201-vjzfzshh 60 14 with with IN cord-256201-vjzfzshh 60 15 the the DT cord-256201-vjzfzshh 60 16 indicated indicate VBN cord-256201-vjzfzshh 60 17 initial initial JJ cord-256201-vjzfzshh 60 18 number number NN cord-256201-vjzfzshh 60 19 ( ( -LRB- cord-256201-vjzfzshh 60 20 N n CD cord-256201-vjzfzshh 60 21 0 0 CD cord-256201-vjzfzshh 60 22 ) ) -RRB- cord-256201-vjzfzshh 60 23 of of IN cord-256201-vjzfzshh 60 24 plaque plaque NN cord-256201-vjzfzshh 60 25 forming form VBG cord-256201-vjzfzshh 60 26 units unit NNS cord-256201-vjzfzshh 60 27 ( ( -LRB- cord-256201-vjzfzshh 60 28 pfu pfu NN cord-256201-vjzfzshh 60 29 ) ) -RRB- cord-256201-vjzfzshh 60 30 and and CC cord-256201-vjzfzshh 60 31 incubated incubate VBN cord-256201-vjzfzshh 60 32 in in IN cord-256201-vjzfzshh 60 33 a a DT cord-256201-vjzfzshh 60 34 Thermomix Thermomix NNP cord-256201-vjzfzshh 60 35 shaker shaker NN cord-256201-vjzfzshh 60 36 ( ( -LRB- cord-256201-vjzfzshh 60 37 Eppendorf Eppendorf NNP cord-256201-vjzfzshh 60 38 ) ) -RRB- cord-256201-vjzfzshh 60 39 at at IN cord-256201-vjzfzshh 60 40 650 650 CD cord-256201-vjzfzshh 60 41 rpm rpm NN cord-256201-vjzfzshh 60 42 until until IN cord-256201-vjzfzshh 60 43 N n NN cord-256201-vjzfzshh 60 44 1 1 CD cord-256201-vjzfzshh 60 45 pfu pfu NN cord-256201-vjzfzshh 60 46 were be VBD cord-256201-vjzfzshh 60 47 produced produce VBN cord-256201-vjzfzshh 60 48 . . . cord-256201-vjzfzshh 61 1 This this DT cord-256201-vjzfzshh 61 2 growth growth NN cord-256201-vjzfzshh 61 3 phase phase NN cord-256201-vjzfzshh 61 4 was be VBD cord-256201-vjzfzshh 61 5 done do VBN cord-256201-vjzfzshh 61 6 under under IN cord-256201-vjzfzshh 61 7 standard standard JJ cord-256201-vjzfzshh 61 8 conditions condition NNS cord-256201-vjzfzshh 61 9 ( ( -LRB- cord-256201-vjzfzshh 61 10 37 37 CD cord-256201-vjzfzshh 61 11 C C NNP cord-256201-vjzfzshh 61 12 ) ) -RRB- cord-256201-vjzfzshh 61 13 , , , cord-256201-vjzfzshh 61 14 at at IN cord-256201-vjzfzshh 61 15 high high JJ cord-256201-vjzfzshh 61 16 temperature temperature NN cord-256201-vjzfzshh 61 17 ( ( -LRB- cord-256201-vjzfzshh 61 18 42 42 CD cord-256201-vjzfzshh 61 19 C C NNP cord-256201-vjzfzshh 61 20 ) ) -RRB- cord-256201-vjzfzshh 61 21 , , , cord-256201-vjzfzshh 61 22 or or CC cord-256201-vjzfzshh 61 23 in in IN cord-256201-vjzfzshh 61 24 the the DT cord-256201-vjzfzshh 61 25 presence presence NN cord-256201-vjzfzshh 61 26 of of IN cord-256201-vjzfzshh 61 27 10 10 CD cord-256201-vjzfzshh 61 28 ng ng NN cord-256201-vjzfzshh 61 29 / / SYM cord-256201-vjzfzshh 61 30 ml ml NN cord-256201-vjzfzshh 61 31 5-FU 5-fu CD cord-256201-vjzfzshh 61 32 ( ( -LRB- cord-256201-vjzfzshh 61 33 37 37 CD cord-256201-vjzfzshh 61 34 C c NN cord-256201-vjzfzshh 61 35 ) ) -RRB- cord-256201-vjzfzshh 61 36 by by IN cord-256201-vjzfzshh 61 37 preincubating preincubate VBG cord-256201-vjzfzshh 61 38 cells cell NNS cord-256201-vjzfzshh 61 39 with with IN cord-256201-vjzfzshh 61 40 5-FU 5-fu CD cord-256201-vjzfzshh 61 41 10 10 CD cord-256201-vjzfzshh 61 42 min min NN cord-256201-vjzfzshh 61 43 before before IN cord-256201-vjzfzshh 61 44 infection infection NN cord-256201-vjzfzshh 61 45 . . . cord-256201-vjzfzshh 62 1 All all DT cord-256201-vjzfzshh 62 2 titrations titration NNS cord-256201-vjzfzshh 62 3 were be VBD cord-256201-vjzfzshh 62 4 done do VBN cord-256201-vjzfzshh 62 5 under under IN cord-256201-vjzfzshh 62 6 the the DT cord-256201-vjzfzshh 62 7 same same JJ cord-256201-vjzfzshh 62 8 , , , cord-256201-vjzfzshh 62 9 standard standard JJ cord-256201-vjzfzshh 62 10 conditions condition NNS cord-256201-vjzfzshh 62 11 ( ( -LRB- cord-256201-vjzfzshh 62 12 IJ1862 ij1862 NN cord-256201-vjzfzshh 62 13 cells cell NNS cord-256201-vjzfzshh 62 14 with with IN cord-256201-vjzfzshh 62 15 agar agar NN cord-256201-vjzfzshh 62 16 overlay overlay NN cord-256201-vjzfzshh 62 17 , , , cord-256201-vjzfzshh 62 18 37 37 CD cord-256201-vjzfzshh 62 19 C c NN cord-256201-vjzfzshh 62 20 , , , cord-256201-vjzfzshh 62 21 no no DT cord-256201-vjzfzshh 62 22 5-FU 5-fu CD cord-256201-vjzfzshh 62 23 ) ) -RRB- cord-256201-vjzfzshh 62 24 . . . cord-256201-vjzfzshh 63 1 N n NN cord-256201-vjzfzshh 63 2 1 1 CD cord-256201-vjzfzshh 63 3 was be VBD cord-256201-vjzfzshh 63 4 determined determine VBN cord-256201-vjzfzshh 63 5 by by IN cord-256201-vjzfzshh 63 6 titrating titrate VBG cord-256201-vjzfzshh 63 7 six six CD cord-256201-vjzfzshh 63 8 of of IN cord-256201-vjzfzshh 63 9 twenty twenty CD cord-256201-vjzfzshh 63 10 - - HYPH cord-256201-vjzfzshh 63 11 four four CD cord-256201-vjzfzshh 63 12 random random JJ cord-256201-vjzfzshh 63 13 cultures culture NNS cord-256201-vjzfzshh 63 14 . . . cord-256201-vjzfzshh 64 1 To to TO cord-256201-vjzfzshh 64 2 score score VB cord-256201-vjzfzshh 64 3 mutants mutant NNS cord-256201-vjzfzshh 64 4 , , , cord-256201-vjzfzshh 64 5 0.4 0.4 CD cord-256201-vjzfzshh 64 6 ml ml XX cord-256201-vjzfzshh 64 7 ( ( -LRB- cord-256201-vjzfzshh 64 8 80 80 CD cord-256201-vjzfzshh 64 9 % % NN cord-256201-vjzfzshh 64 10 of of IN cord-256201-vjzfzshh 64 11 the the DT cord-256201-vjzfzshh 64 12 total total JJ cord-256201-vjzfzshh 64 13 volume volume NN cord-256201-vjzfzshh 64 14 ) ) -RRB- cord-256201-vjzfzshh 64 15 was be VBD cord-256201-vjzfzshh 64 16 titrated titrate VBN cord-256201-vjzfzshh 64 17 on on IN cord-256201-vjzfzshh 64 18 the the DT cord-256201-vjzfzshh 64 19 restrictive restrictive JJ cord-256201-vjzfzshh 64 20 E. E. NNP cord-256201-vjzfzshh 64 21 coli coli NNS cord-256201-vjzfzshh 64 22 gro87 gro87 CD cord-256201-vjzfzshh 64 23 strain strain NN cord-256201-vjzfzshh 64 24 , , , cord-256201-vjzfzshh 64 25 a a DT cord-256201-vjzfzshh 64 26 rep rep NN cord-256201-vjzfzshh 64 27 mutant mutant NN cord-256201-vjzfzshh 64 28 where where WRB cord-256201-vjzfzshh 64 29 only only RB cord-256201-vjzfzshh 64 30 /X174 /X174 NFP cord-256201-vjzfzshh 64 31 mutants mutant NNS cord-256201-vjzfzshh 64 32 with with IN cord-256201-vjzfzshh 64 33 certain certain JJ cord-256201-vjzfzshh 64 34 mutations mutation NNS cord-256201-vjzfzshh 64 35 in in IN cord-256201-vjzfzshh 64 36 the the DT cord-256201-vjzfzshh 64 37 N n CD cord-256201-vjzfzshh 64 38 - - HYPH cord-256201-vjzfzshh 64 39 terminal terminal JJ cord-256201-vjzfzshh 64 40 end end NN cord-256201-vjzfzshh 64 41 of of IN cord-256201-vjzfzshh 64 42 the the DT cord-256201-vjzfzshh 64 43 viral viral JJ cord-256201-vjzfzshh 64 44 protein protein NN cord-256201-vjzfzshh 65 1 A a DT cord-256201-vjzfzshh 65 2 can can MD cord-256201-vjzfzshh 65 3 form form VB cord-256201-vjzfzshh 65 4 plaques plaque NNS cord-256201-vjzfzshh 65 5 ( ( -LRB- cord-256201-vjzfzshh 65 6 Ekechukwu Ekechukwu NNP cord-256201-vjzfzshh 65 7 , , , cord-256201-vjzfzshh 65 8 Oberste Oberste NNP cord-256201-vjzfzshh 65 9 , , , cord-256201-vjzfzshh 65 10 and and CC cord-256201-vjzfzshh 65 11 Fane Fane NNP cord-256201-vjzfzshh 65 12 1995 1995 CD cord-256201-vjzfzshh 65 13 ) ) -RRB- cord-256201-vjzfzshh 65 14 , , , cord-256201-vjzfzshh 65 15 the the DT cord-256201-vjzfzshh 65 16 total total JJ cord-256201-vjzfzshh 65 17 number number NN cord-256201-vjzfzshh 65 18 of of IN cord-256201-vjzfzshh 65 19 different different JJ cord-256201-vjzfzshh 65 20 substitutions substitution NNS cord-256201-vjzfzshh 65 21 leading lead VBG cord-256201-vjzfzshh 65 22 to to IN cord-256201-vjzfzshh 65 23 the the DT cord-256201-vjzfzshh 65 24 resistance resistance NN cord-256201-vjzfzshh 65 25 phenotype phenotype NN cord-256201-vjzfzshh 65 26 being be VBG cord-256201-vjzfzshh 65 27 T T NNP cord-256201-vjzfzshh 65 28 ¼ ¼ NNP cord-256201-vjzfzshh 65 29 7 7 CD cord-256201-vjzfzshh 65 30 under under IN cord-256201-vjzfzshh 65 31 our -PRON- PRP$ cord-256201-vjzfzshh 65 32 assay assay NN cord-256201-vjzfzshh 65 33 conditions condition NNS cord-256201-vjzfzshh 65 34 ( ( -LRB- cord-256201-vjzfzshh 65 35 Cuevas Cuevas NNP cord-256201-vjzfzshh 65 36 , , , cord-256201-vjzfzshh 65 37 Duffy Duffy NNP cord-256201-vjzfzshh 65 38 , , , cord-256201-vjzfzshh 65 39 and and CC cord-256201-vjzfzshh 65 40 Sanjuá Sanjuá NNP cord-256201-vjzfzshh 65 41 n n NNP cord-256201-vjzfzshh 65 42 2009 2009 CD cord-256201-vjzfzshh 65 43 ) ) -RRB- cord-256201-vjzfzshh 65 44 . . . cord-256201-vjzfzshh 66 1 We -PRON- PRP cord-256201-vjzfzshh 66 2 estimated estimate VBD cord-256201-vjzfzshh 66 3 the the DT cord-256201-vjzfzshh 66 4 rate rate NN cord-256201-vjzfzshh 66 5 m m NN cord-256201-vjzfzshh 66 6 at at IN cord-256201-vjzfzshh 66 7 which which WDT cord-256201-vjzfzshh 66 8 gro87-resistant gro87-resistant JJ cord-256201-vjzfzshh 66 9 mutants mutant NNS cord-256201-vjzfzshh 66 10 appeared appear VBD cord-256201-vjzfzshh 66 11 using use VBG cord-256201-vjzfzshh 66 12 the the DT cord-256201-vjzfzshh 66 13 null null JJ cord-256201-vjzfzshh 66 14 - - HYPH cord-256201-vjzfzshh 66 15 class class NN cord-256201-vjzfzshh 66 16 method method NN cord-256201-vjzfzshh 66 17 , , , cord-256201-vjzfzshh 66 18 which which WDT cord-256201-vjzfzshh 66 19 is be VBZ cord-256201-vjzfzshh 66 20 based base VBN cord-256201-vjzfzshh 66 21 on on IN cord-256201-vjzfzshh 66 22 counting count VBG cord-256201-vjzfzshh 66 23 the the DT cord-256201-vjzfzshh 66 24 proportion proportion NN cord-256201-vjzfzshh 66 25 of of IN cord-256201-vjzfzshh 66 26 cultures culture NNS cord-256201-vjzfzshh 66 27 showing show VBG cord-256201-vjzfzshh 66 28 zero zero CD cord-256201-vjzfzshh 66 29 versus versus NN cord-256201-vjzfzshh 66 30 at at RB cord-256201-vjzfzshh 66 31 least least RBS cord-256201-vjzfzshh 66 32 one one CD cord-256201-vjzfzshh 66 33 mutant mutant NN cord-256201-vjzfzshh 66 34 . . . cord-256201-vjzfzshh 67 1 The the DT cord-256201-vjzfzshh 67 2 number number NN cord-256201-vjzfzshh 67 3 of of IN cord-256201-vjzfzshh 67 4 mutations mutation NNS cord-256201-vjzfzshh 67 5 per per IN cord-256201-vjzfzshh 67 6 culture culture NN cord-256201-vjzfzshh 67 7 should should MD cord-256201-vjzfzshh 67 8 follow follow VB cord-256201-vjzfzshh 67 9 a a DT cord-256201-vjzfzshh 67 10 Poisson Poisson NNP cord-256201-vjzfzshh 67 11 distribution distribution NN cord-256201-vjzfzshh 67 12 with with IN cord-256201-vjzfzshh 67 13 parameter parameter NN cord-256201-vjzfzshh 67 14 k k NNP cord-256201-vjzfzshh 67 15 ¼ ¼ NNP cord-256201-vjzfzshh 67 16 m(N m(N NNP cord-256201-vjzfzshh 67 17 1 1 CD cord-256201-vjzfzshh 67 18 -N -n SYM cord-256201-vjzfzshh 67 19 0 0 CD cord-256201-vjzfzshh 67 20 ) ) -RRB- cord-256201-vjzfzshh 67 21 , , , cord-256201-vjzfzshh 67 22 such such JJ cord-256201-vjzfzshh 67 23 that that IN cord-256201-vjzfzshh 67 24 the the DT cord-256201-vjzfzshh 67 25 expected expect VBN cord-256201-vjzfzshh 67 26 probability probability NN cord-256201-vjzfzshh 67 27 of of IN cord-256201-vjzfzshh 67 28 no no DT cord-256201-vjzfzshh 67 29 mutants mutant NNS cord-256201-vjzfzshh 67 30 in in IN cord-256201-vjzfzshh 67 31 a a DT cord-256201-vjzfzshh 67 32 culture culture NN cord-256201-vjzfzshh 67 33 is be VBZ cord-256201-vjzfzshh 67 34 P p NN cord-256201-vjzfzshh 67 35 0 0 CD cord-256201-vjzfzshh 67 36 ¼ ¼ CD cord-256201-vjzfzshh 67 37 exp[-m(N exp[-m(N NNP cord-256201-vjzfzshh 67 38 1 1 CD cord-256201-vjzfzshh 67 39 -N -n SYM cord-256201-vjzfzshh 67 40 0 0 NFP cord-256201-vjzfzshh 67 41 ) ) -RRB- cord-256201-vjzfzshh 67 42 ] ] -RRB- cord-256201-vjzfzshh 67 43 . . . cord-256201-vjzfzshh 68 1 Mutation mutation NN cord-256201-vjzfzshh 68 2 rates rate NNS cord-256201-vjzfzshh 68 3 per per IN cord-256201-vjzfzshh 68 4 nucleotide nucleotide JJ cord-256201-vjzfzshh 68 5 per per IN cord-256201-vjzfzshh 68 6 round round NN cord-256201-vjzfzshh 68 7 of of IN cord-256201-vjzfzshh 68 8 copying copying NN cord-256201-vjzfzshh 68 9 ( ( -LRB- cord-256201-vjzfzshh 68 10 m m NNP cord-256201-vjzfzshh 68 11 / / SYM cord-256201-vjzfzshh 68 12 n n NN cord-256201-vjzfzshh 68 13 / / SYM cord-256201-vjzfzshh 68 14 r r NN cord-256201-vjzfzshh 68 15 ) ) -RRB- cord-256201-vjzfzshh 68 16 were be VBD cord-256201-vjzfzshh 68 17 then then RB cord-256201-vjzfzshh 68 18 calculated calculate VBN cord-256201-vjzfzshh 68 19 as as IN cord-256201-vjzfzshh 68 20 m m NNP cord-256201-vjzfzshh 68 21 ¼ ¼ NNP cord-256201-vjzfzshh 68 22 3 3 CD cord-256201-vjzfzshh 68 23 m m NNP cord-256201-vjzfzshh 68 24 / / SYM cord-256201-vjzfzshh 68 25 T T NNP cord-256201-vjzfzshh 68 26 , , , cord-256201-vjzfzshh 68 27 where where WRB cord-256201-vjzfzshh 68 28 the the DT cord-256201-vjzfzshh 68 29 factor factor NN cord-256201-vjzfzshh 68 30 3 3 CD cord-256201-vjzfzshh 68 31 stands stand VBZ cord-256201-vjzfzshh 68 32 for for IN cord-256201-vjzfzshh 68 33 the the DT cord-256201-vjzfzshh 68 34 fact fact NN cord-256201-vjzfzshh 68 35 that that IN cord-256201-vjzfzshh 68 36 each each DT cord-256201-vjzfzshh 68 37 base base NN cord-256201-vjzfzshh 68 38 can can MD cord-256201-vjzfzshh 68 39 mutate mutate VB cord-256201-vjzfzshh 68 40 to to IN cord-256201-vjzfzshh 68 41 three three CD cord-256201-vjzfzshh 68 42 different different JJ cord-256201-vjzfzshh 68 43 bases basis NNS cord-256201-vjzfzshh 68 44 . . . cord-256201-vjzfzshh 69 1 Three three CD cord-256201-vjzfzshh 69 2 independent independent JJ cord-256201-vjzfzshh 69 3 tests test NNS cord-256201-vjzfzshh 69 4 were be VBD cord-256201-vjzfzshh 69 5 performed perform VBN cord-256201-vjzfzshh 69 6 for for IN cord-256201-vjzfzshh 69 7 each each DT cord-256201-vjzfzshh 69 8 mutant mutant JJ cord-256201-vjzfzshh 69 9 , , , cord-256201-vjzfzshh 69 10 except except IN cord-256201-vjzfzshh 69 11 for for IN cord-256201-vjzfzshh 69 12 the the DT cord-256201-vjzfzshh 69 13 WT WT NNP cord-256201-vjzfzshh 69 14 , , , cord-256201-vjzfzshh 69 15 for for IN cord-256201-vjzfzshh 69 16 which which WDT cord-256201-vjzfzshh 69 17 fifteen fifteen CD cord-256201-vjzfzshh 69 18 tests test NNS cord-256201-vjzfzshh 69 19 were be VBD cord-256201-vjzfzshh 69 20 performed perform VBN cord-256201-vjzfzshh 69 21 . . . cord-256201-vjzfzshh 70 1 Mutation mutation NN cord-256201-vjzfzshh 70 2 rate rate NN cord-256201-vjzfzshh 70 3 estimates estimate NNS cord-256201-vjzfzshh 70 4 for for IN cord-256201-vjzfzshh 70 5 the the DT cord-256201-vjzfzshh 70 6 WT WT NNP cord-256201-vjzfzshh 70 7 in in IN cord-256201-vjzfzshh 70 8 the the DT cord-256201-vjzfzshh 70 9 presence presence NN cord-256201-vjzfzshh 70 10 of of IN cord-256201-vjzfzshh 70 11 5-FU 5-fu CD cord-256201-vjzfzshh 70 12 10 10 CD cord-256201-vjzfzshh 70 13 ng ng NNP cord-256201-vjzfzshh 70 14 / / SYM cord-256201-vjzfzshh 70 15 ml ml NNS cord-256201-vjzfzshh 70 16 were be VBD cord-256201-vjzfzshh 70 17 taken take VBN cord-256201-vjzfzshh 70 18 from from IN cord-256201-vjzfzshh 70 19 a a DT cord-256201-vjzfzshh 70 20 previous previous JJ cord-256201-vjzfzshh 70 21 work work NN cord-256201-vjzfzshh 70 22 ( ( -LRB- cord-256201-vjzfzshh 70 23 Pereira Pereira NNP cord-256201-vjzfzshh 70 24 - - HYPH cord-256201-vjzfzshh 70 25 Gó Gó NNP cord-256201-vjzfzshh 70 26 mez mez NNP cord-256201-vjzfzshh 70 27 and and CC cord-256201-vjzfzshh 70 28 Sanjuá Sanjuá NNP cord-256201-vjzfzshh 70 29 n n NNP cord-256201-vjzfzshh 70 30 2014 2014 CD cord-256201-vjzfzshh 70 31 ) ) -RRB- cord-256201-vjzfzshh 70 32 . . . cord-256201-vjzfzshh 71 1 For for IN cord-256201-vjzfzshh 71 2 fluctuation fluctuation NN cord-256201-vjzfzshh 71 3 tests test NNS cord-256201-vjzfzshh 71 4 performed perform VBN cord-256201-vjzfzshh 71 5 under under IN cord-256201-vjzfzshh 71 6 stress stress NN cord-256201-vjzfzshh 71 7 conditions condition NNS cord-256201-vjzfzshh 71 8 , , , cord-256201-vjzfzshh 71 9 we -PRON- PRP cord-256201-vjzfzshh 71 10 applied apply VBD cord-256201-vjzfzshh 71 11 a a DT cord-256201-vjzfzshh 71 12 correction correction NN cord-256201-vjzfzshh 71 13 for for IN cord-256201-vjzfzshh 71 14 bias bias NN cord-256201-vjzfzshh 71 15 in in IN cord-256201-vjzfzshh 71 16 N n CD cord-256201-vjzfzshh 71 17 1 1 CD cord-256201-vjzfzshh 71 18 estimation estimation NN cord-256201-vjzfzshh 71 19 which which WDT cord-256201-vjzfzshh 71 20 may may MD cord-256201-vjzfzshh 71 21 result result VB cord-256201-vjzfzshh 71 22 from from IN cord-256201-vjzfzshh 71 23 increased increase VBN cord-256201-vjzfzshh 71 24 viral viral JJ cord-256201-vjzfzshh 71 25 degradation degradation NN cord-256201-vjzfzshh 71 26 relative relative JJ cord-256201-vjzfzshh 71 27 to to IN cord-256201-vjzfzshh 71 28 standard standard JJ cord-256201-vjzfzshh 71 29 conditions condition NNS cord-256201-vjzfzshh 71 30 . . . cord-256201-vjzfzshh 72 1 Following follow VBG cord-256201-vjzfzshh 72 2 previous previous JJ cord-256201-vjzfzshh 72 3 work work NN cord-256201-vjzfzshh 72 4 ( ( -LRB- cord-256201-vjzfzshh 72 5 Bradwell Bradwell NNP cord-256201-vjzfzshh 72 6 et et NNP cord-256201-vjzfzshh 72 7 al al NNP cord-256201-vjzfzshh 72 8 . . NNP cord-256201-vjzfzshh 72 9 2013 2013 CD cord-256201-vjzfzshh 72 10 ) ) -RRB- cord-256201-vjzfzshh 72 11 , , , cord-256201-vjzfzshh 72 12 the the DT cord-256201-vjzfzshh 72 13 probability probability NN cord-256201-vjzfzshh 72 14 of of IN cord-256201-vjzfzshh 72 15 observing observe VBG cord-256201-vjzfzshh 72 16 no no DT cord-256201-vjzfzshh 72 17 mutants mutant NNS cord-256201-vjzfzshh 72 18 was be VBD cord-256201-vjzfzshh 72 19 recalculated recalculate VBN cord-256201-vjzfzshh 72 20 accordingly accordingly RB cord-256201-vjzfzshh 72 21 as as IN cord-256201-vjzfzshh 72 22 where where WRB cord-256201-vjzfzshh 72 23 ź ź NN cord-256201-vjzfzshh 72 24 quantifies quantify VBZ cord-256201-vjzfzshh 72 25 this this DT cord-256201-vjzfzshh 72 26 bias bias NN cord-256201-vjzfzshh 72 27 . . . cord-256201-vjzfzshh 73 1 As as IN cord-256201-vjzfzshh 73 2 an an DT cord-256201-vjzfzshh 73 3 indicator indicator NN cord-256201-vjzfzshh 73 4 of of IN cord-256201-vjzfzshh 73 5 ź ź NN cord-256201-vjzfzshh 73 6 , , , cord-256201-vjzfzshh 73 7 we -PRON- PRP cord-256201-vjzfzshh 73 8 determined determine VBD cord-256201-vjzfzshh 73 9 the the DT cord-256201-vjzfzshh 73 10 relative relative JJ cord-256201-vjzfzshh 73 11 plating plating NN cord-256201-vjzfzshh 73 12 efficiency efficiency NN cord-256201-vjzfzshh 73 13 of of IN cord-256201-vjzfzshh 73 14 the the DT cord-256201-vjzfzshh 73 15 WT WT NNP cord-256201-vjzfzshh 73 16 virus virus NN cord-256201-vjzfzshh 73 17 under under IN cord-256201-vjzfzshh 73 18 the the DT cord-256201-vjzfzshh 73 19 two two CD cord-256201-vjzfzshh 73 20 stress stress NN cord-256201-vjzfzshh 73 21 conditions condition NNS cord-256201-vjzfzshh 73 22 . . . cord-256201-vjzfzshh 74 1 Plating plating NN cord-256201-vjzfzshh 74 2 efficiency efficiency NN cord-256201-vjzfzshh 74 3 was be VBD cord-256201-vjzfzshh 74 4 slightly slightly RB cord-256201-vjzfzshh 74 5 increased increase VBN cord-256201-vjzfzshh 74 6 at at IN cord-256201-vjzfzshh 74 7 42 42 CD cord-256201-vjzfzshh 74 8 C C NNP cord-256201-vjzfzshh 74 9 ( ( -LRB- cord-256201-vjzfzshh 74 10 ź ź NN cord-256201-vjzfzshh 74 11 ¼ ¼ NNP cord-256201-vjzfzshh 74 12 1.13 1.13 CD cord-256201-vjzfzshh 74 13 6 6 CD cord-256201-vjzfzshh 74 14 0.13 0.13 CD cord-256201-vjzfzshh 74 15 ) ) -RRB- cord-256201-vjzfzshh 74 16 and and CC cord-256201-vjzfzshh 74 17 reduced reduce VBN cord-256201-vjzfzshh 74 18 in in IN cord-256201-vjzfzshh 74 19 the the DT cord-256201-vjzfzshh 74 20 presence presence NN cord-256201-vjzfzshh 74 21 of of IN cord-256201-vjzfzshh 74 22 10 10 CD cord-256201-vjzfzshh 74 23 ng ng NN cord-256201-vjzfzshh 74 24 / / SYM cord-256201-vjzfzshh 74 25 ml ml NN cord-256201-vjzfzshh 74 26 5-FU 5-fu CD cord-256201-vjzfzshh 75 1 ( ( -LRB- cord-256201-vjzfzshh 75 2 ź ź SYM cord-256201-vjzfzshh 75 3 ¼ ¼ CD cord-256201-vjzfzshh 75 4 0.75 0.75 CD cord-256201-vjzfzshh 75 5 6 6 CD cord-256201-vjzfzshh 75 6 0.12 0.12 CD cord-256201-vjzfzshh 75 7 ) ) -RRB- cord-256201-vjzfzshh 75 8 . . . cord-256201-vjzfzshh 76 1 We -PRON- PRP cord-256201-vjzfzshh 76 2 therefore therefore RB cord-256201-vjzfzshh 76 3 used use VBD cord-256201-vjzfzshh 76 4 the the DT cord-256201-vjzfzshh 76 5 corresponding correspond VBG cord-256201-vjzfzshh 76 6 ź ź NN cord-256201-vjzfzshh 76 7 values value NNS cord-256201-vjzfzshh 76 8 for for IN cord-256201-vjzfzshh 76 9 calculating calculate VBG cord-256201-vjzfzshh 76 10 mutation mutation NN cord-256201-vjzfzshh 76 11 rates rate NNS cord-256201-vjzfzshh 76 12 at at IN cord-256201-vjzfzshh 76 13 42 42 CD cord-256201-vjzfzshh 76 14 C c NN cord-256201-vjzfzshh 76 15 and and CC cord-256201-vjzfzshh 76 16 in in IN cord-256201-vjzfzshh 76 17 the the DT cord-256201-vjzfzshh 76 18 presence presence NN cord-256201-vjzfzshh 76 19 of of IN cord-256201-vjzfzshh 76 20 5-FU 5-fu CD cord-256201-vjzfzshh 76 21 . . . cord-256201-vjzfzshh 77 1 Since since IN cord-256201-vjzfzshh 77 2 the the DT cord-256201-vjzfzshh 77 3 relative relative JJ cord-256201-vjzfzshh 77 4 plating plating NN cord-256201-vjzfzshh 77 5 efficiencies efficiency NNS cord-256201-vjzfzshh 77 6 of of IN cord-256201-vjzfzshh 77 7 the the DT cord-256201-vjzfzshh 77 8 20GATC 20gatc CD cord-256201-vjzfzshh 77 9 virus virus NN cord-256201-vjzfzshh 77 10 did do VBD cord-256201-vjzfzshh 77 11 not not RB cord-256201-vjzfzshh 77 12 differ differ VB cord-256201-vjzfzshh 77 13 significantly significantly RB cord-256201-vjzfzshh 77 14 from from IN cord-256201-vjzfzshh 77 15 those those DT cord-256201-vjzfzshh 77 16 of of IN cord-256201-vjzfzshh 77 17 the the DT cord-256201-vjzfzshh 77 18 WT WT NNP cord-256201-vjzfzshh 77 19 ( ( -LRB- cord-256201-vjzfzshh 77 20 t t NN cord-256201-vjzfzshh 77 21 - - HYPH cord-256201-vjzfzshh 77 22 test test NN cord-256201-vjzfzshh 77 23 : : : cord-256201-vjzfzshh 77 24 P p NN cord-256201-vjzfzshh 77 25 > > XX cord-256201-vjzfzshh 77 26 0.5 0.5 CD cord-256201-vjzfzshh 77 27 ) ) -RRB- cord-256201-vjzfzshh 77 28 , , , cord-256201-vjzfzshh 77 29 we -PRON- PRP cord-256201-vjzfzshh 77 30 used use VBD cord-256201-vjzfzshh 77 31 the the DT cord-256201-vjzfzshh 77 32 same same JJ cord-256201-vjzfzshh 77 33 ź ź NN cord-256201-vjzfzshh 77 34 values value NNS cord-256201-vjzfzshh 77 35 . . . cord-256201-vjzfzshh 78 1 Q Q NNP cord-256201-vjzfzshh 78 2 - - HYPH cord-256201-vjzfzshh 78 3 Q q NN cord-256201-vjzfzshh 78 4 plots plot NNS cord-256201-vjzfzshh 78 5 showed show VBD cord-256201-vjzfzshh 78 6 that that IN cord-256201-vjzfzshh 78 7 mutation mutation NN cord-256201-vjzfzshh 78 8 rate rate NN cord-256201-vjzfzshh 78 9 estimates estimate NNS cord-256201-vjzfzshh 78 10 were be VBD cord-256201-vjzfzshh 78 11 not not RB cord-256201-vjzfzshh 78 12 normally normally RB cord-256201-vjzfzshh 78 13 distributed distribute VBN cord-256201-vjzfzshh 78 14 , , , cord-256201-vjzfzshh 78 15 whereas whereas IN cord-256201-vjzfzshh 78 16 normality normality NN cord-256201-vjzfzshh 78 17 was be VBD cord-256201-vjzfzshh 78 18 satisfied satisfied JJ cord-256201-vjzfzshh 78 19 using use VBG cord-256201-vjzfzshh 78 20 log log NN cord-256201-vjzfzshh 78 21 - - HYPH cord-256201-vjzfzshh 78 22 transformed transform VBN cord-256201-vjzfzshh 78 23 rates rate NNS cord-256201-vjzfzshh 78 24 . . . cord-256201-vjzfzshh 79 1 All all DT cord-256201-vjzfzshh 79 2 statistical statistical JJ cord-256201-vjzfzshh 79 3 tests test NNS cord-256201-vjzfzshh 79 4 were be VBD cord-256201-vjzfzshh 79 5 thus thus RB cord-256201-vjzfzshh 79 6 performed perform VBN cord-256201-vjzfzshh 79 7 using use VBG cord-256201-vjzfzshh 79 8 log log NN cord-256201-vjzfzshh 79 9 - - HYPH cord-256201-vjzfzshh 79 10 transformed transform VBN cord-256201-vjzfzshh 79 11 rates rate NNS cord-256201-vjzfzshh 79 12 . . . cord-256201-vjzfzshh 80 1 The the DT cord-256201-vjzfzshh 80 2 viral viral JJ cord-256201-vjzfzshh 80 3 exponential exponential JJ cord-256201-vjzfzshh 80 4 growth growth NN cord-256201-vjzfzshh 80 5 rate rate NN cord-256201-vjzfzshh 80 6 was be VBD cord-256201-vjzfzshh 80 7 estimated estimate VBN cord-256201-vjzfzshh 80 8 as as IN cord-256201-vjzfzshh 80 9 r r NNP cord-256201-vjzfzshh 80 10 ¼ ¼ NNP cord-256201-vjzfzshh 80 11 ln(N ln(N NNP cord-256201-vjzfzshh 80 12 1 1 CD cord-256201-vjzfzshh 80 13 / / SYM cord-256201-vjzfzshh 80 14 N n CD cord-256201-vjzfzshh 80 15 0 0 CD cord-256201-vjzfzshh 80 16 ) ) -RRB- cord-256201-vjzfzshh 81 1 /t /t NNP cord-256201-vjzfzshh 81 2 , , , cord-256201-vjzfzshh 81 3 where where WRB cord-256201-vjzfzshh 81 4 N n CD cord-256201-vjzfzshh 81 5 1 1 CD cord-256201-vjzfzshh 81 6 and and CC cord-256201-vjzfzshh 81 7 N n CD cord-256201-vjzfzshh 81 8 0 0 CD cord-256201-vjzfzshh 81 9 were be VBD cord-256201-vjzfzshh 81 10 obtained obtain VBN cord-256201-vjzfzshh 81 11 from from IN cord-256201-vjzfzshh 81 12 the the DT cord-256201-vjzfzshh 81 13 fluctuation fluctuation NN cord-256201-vjzfzshh 81 14 test test NN cord-256201-vjzfzshh 81 15 assays assay NNS cord-256201-vjzfzshh 81 16 , , , cord-256201-vjzfzshh 81 17 and and CC cord-256201-vjzfzshh 82 1 t t NNP cord-256201-vjzfzshh 82 2 is be VBZ cord-256201-vjzfzshh 82 3 the the DT cord-256201-vjzfzshh 82 4 incubation incubation NN cord-256201-vjzfzshh 82 5 time time NN cord-256201-vjzfzshh 82 6 in in IN cord-256201-vjzfzshh 82 7 hours hour NNS cord-256201-vjzfzshh 82 8 . . . cord-256201-vjzfzshh 83 1 Q Q NNP cord-256201-vjzfzshh 83 2 - - HYPH cord-256201-vjzfzshh 83 3 Q q NN cord-256201-vjzfzshh 83 4 plots plot NNS cord-256201-vjzfzshh 83 5 indicated indicate VBD cord-256201-vjzfzshh 83 6 that that IN cord-256201-vjzfzshh 83 7 growth growth NN cord-256201-vjzfzshh 83 8 rates rate NNS cord-256201-vjzfzshh 83 9 were be VBD cord-256201-vjzfzshh 83 10 normally normally RB cord-256201-vjzfzshh 83 11 distributed distribute VBN cord-256201-vjzfzshh 83 12 . . . cord-256201-vjzfzshh 84 1 The the DT cord-256201-vjzfzshh 84 2 /X174 /X174 NFP cord-256201-vjzfzshh 84 3 dsDNA dsdna RB cord-256201-vjzfzshh 84 4 replicative replicative JJ cord-256201-vjzfzshh 84 5 form form NN cord-256201-vjzfzshh 84 6 was be VBD cord-256201-vjzfzshh 84 7 quantified quantify VBN cord-256201-vjzfzshh 84 8 using use VBG cord-256201-vjzfzshh 84 9 the the DT cord-256201-vjzfzshh 84 10 Quant Quant NNP cord-256201-vjzfzshh 84 11 - - : cord-256201-vjzfzshh 84 12 iT it PRP cord-256201-vjzfzshh 84 13 PicoGreen PicoGreen NNP cord-256201-vjzfzshh 84 14 dsDNA dsdna RB cord-256201-vjzfzshh 84 15 broad broad JJ cord-256201-vjzfzshh 84 16 range range NN cord-256201-vjzfzshh 84 17 assay assay NN cord-256201-vjzfzshh 84 18 kit kit NN cord-256201-vjzfzshh 84 19 ( ( -LRB- cord-256201-vjzfzshh 84 20 Life Life NNP cord-256201-vjzfzshh 84 21 technologies technology NNS cord-256201-vjzfzshh 84 22 ) ) -RRB- cord-256201-vjzfzshh 84 23 , , , cord-256201-vjzfzshh 84 24 and and CC cord-256201-vjzfzshh 84 25 all all DT cord-256201-vjzfzshh 84 26 extracts extract NNS cord-256201-vjzfzshh 84 27 were be VBD cord-256201-vjzfzshh 84 28 brought bring VBN cord-256201-vjzfzshh 84 29 to to IN cord-256201-vjzfzshh 84 30 the the DT cord-256201-vjzfzshh 84 31 same same JJ cord-256201-vjzfzshh 84 32 concentration concentration NN cord-256201-vjzfzshh 84 33 ( ( -LRB- cord-256201-vjzfzshh 84 34 30 30 CD cord-256201-vjzfzshh 84 35 ng ng NN cord-256201-vjzfzshh 84 36 / / SYM cord-256201-vjzfzshh 84 37 ml ml NN cord-256201-vjzfzshh 84 38 ) ) -RRB- cord-256201-vjzfzshh 84 39 . . . cord-256201-vjzfzshh 85 1 DNA DNA NNP cord-256201-vjzfzshh 85 2 from from IN cord-256201-vjzfzshh 85 3 each each DT cord-256201-vjzfzshh 85 4 virus virus NN cord-256201-vjzfzshh 85 5 was be VBD cord-256201-vjzfzshh 85 6 split split VBN cord-256201-vjzfzshh 85 7 into into IN cord-256201-vjzfzshh 85 8 three three CD cord-256201-vjzfzshh 85 9 aliquots aliquot NNS cord-256201-vjzfzshh 85 10 , , , cord-256201-vjzfzshh 85 11 which which WDT cord-256201-vjzfzshh 85 12 were be VBD cord-256201-vjzfzshh 85 13 treated treat VBN cord-256201-vjzfzshh 85 14 with with IN cord-256201-vjzfzshh 85 15 XhoI XhoI NNP cord-256201-vjzfzshh 85 16 to to TO cord-256201-vjzfzshh 85 17 linearize linearize VB cord-256201-vjzfzshh 85 18 the the DT cord-256201-vjzfzshh 85 19 genome genome NN cord-256201-vjzfzshh 85 20 , , , cord-256201-vjzfzshh 85 21 with with IN cord-256201-vjzfzshh 85 22 XhoI XhoI NNP cord-256201-vjzfzshh 85 23 and and CC cord-256201-vjzfzshh 85 24 DpnI DpnI NNP cord-256201-vjzfzshh 85 25 to to TO cord-256201-vjzfzshh 85 26 digest digest VB cord-256201-vjzfzshh 85 27 methylated methylated JJ cord-256201-vjzfzshh 85 28 GATCs GATCs NNP cord-256201-vjzfzshh 85 29 , , , cord-256201-vjzfzshh 85 30 or or CC cord-256201-vjzfzshh 85 31 with with IN cord-256201-vjzfzshh 85 32 XhoI XhoI NNP cord-256201-vjzfzshh 85 33 and and CC cord-256201-vjzfzshh 85 34 MboI MboI NNP cord-256201-vjzfzshh 85 35 ( ( -LRB- cord-256201-vjzfzshh 85 36 i.e. i.e. FW cord-256201-vjzfzshh 85 37 , , , cord-256201-vjzfzshh 85 38 DpnII DpnII NNP cord-256201-vjzfzshh 85 39 ) ) -RRB- cord-256201-vjzfzshh 85 40 to to TO cord-256201-vjzfzshh 85 41 digest digest VB cord-256201-vjzfzshh 85 42 non non JJ cord-256201-vjzfzshh 85 43 - - JJ cord-256201-vjzfzshh 85 44 methylated methylated JJ cord-256201-vjzfzshh 85 45 GATCs gatc NNS cord-256201-vjzfzshh 85 46 . . . cord-256201-vjzfzshh 86 1 Double double JJ cord-256201-vjzfzshh 86 2 digestions digestion NNS cord-256201-vjzfzshh 86 3 were be VBD cord-256201-vjzfzshh 86 4 performed perform VBN cord-256201-vjzfzshh 86 5 according accord VBG cord-256201-vjzfzshh 86 6 to to IN cord-256201-vjzfzshh 86 7 the the DT cord-256201-vjzfzshh 86 8 manufacturer manufacturer NN cord-256201-vjzfzshh 86 9 instructions instruction NNS cord-256201-vjzfzshh 86 10 ( ( -LRB- cord-256201-vjzfzshh 86 11 Thermoscientific Thermoscientific NNP cord-256201-vjzfzshh 86 12 ) ) -RRB- cord-256201-vjzfzshh 86 13 . . . cord-256201-vjzfzshh 87 1 A a DT cord-256201-vjzfzshh 87 2 standard standard JJ cord-256201-vjzfzshh 87 3 plasmid plasmid NN cord-256201-vjzfzshh 87 4 ( ( -LRB- cord-256201-vjzfzshh 87 5 pIRES pIRES NNP cord-256201-vjzfzshh 87 6 , , , cord-256201-vjzfzshh 87 7 Clontech Clontech NNP cord-256201-vjzfzshh 87 8 ) ) -RRB- cord-256201-vjzfzshh 87 9 was be VBD cord-256201-vjzfzshh 87 10 used use VBN cord-256201-vjzfzshh 87 11 as as IN cord-256201-vjzfzshh 87 12 a a DT cord-256201-vjzfzshh 87 13 digestion digestion NN cord-256201-vjzfzshh 87 14 control control NN cord-256201-vjzfzshh 87 15 ( ( -LRB- cord-256201-vjzfzshh 87 16 not not RB cord-256201-vjzfzshh 87 17 shown show VBN cord-256201-vjzfzshh 87 18 ) ) -RRB- cord-256201-vjzfzshh 87 19 . . . cord-256201-vjzfzshh 88 1 A a DT cord-256201-vjzfzshh 88 2 monochrome monochrome JJ cord-256201-vjzfzshh 88 3 picture picture NN cord-256201-vjzfzshh 88 4 of of IN cord-256201-vjzfzshh 88 5 the the DT cord-256201-vjzfzshh 88 6 gel gel NN cord-256201-vjzfzshh 88 7 was be VBD cord-256201-vjzfzshh 88 8 transformed transform VBN cord-256201-vjzfzshh 88 9 to to IN cord-256201-vjzfzshh 88 10 an an DT cord-256201-vjzfzshh 88 11 eight eight CD cord-256201-vjzfzshh 88 12 - - HYPH cord-256201-vjzfzshh 88 13 bit bit NN cord-256201-vjzfzshh 88 14 image image NN cord-256201-vjzfzshh 88 15 , , , cord-256201-vjzfzshh 88 16 and and CC cord-256201-vjzfzshh 88 17 the the DT cord-256201-vjzfzshh 88 18 pixel pixel NN cord-256201-vjzfzshh 88 19 area area NN cord-256201-vjzfzshh 88 20 and and CC cord-256201-vjzfzshh 88 21 intensity intensity NN cord-256201-vjzfzshh 88 22 of of IN cord-256201-vjzfzshh 88 23 each each DT cord-256201-vjzfzshh 88 24 band band NN cord-256201-vjzfzshh 88 25 were be VBD cord-256201-vjzfzshh 88 26 quantified quantify VBN cord-256201-vjzfzshh 88 27 using use VBG cord-256201-vjzfzshh 88 28 ImageJ. ImageJ. NNP cord-256201-vjzfzshh 89 1 Given give VBN cord-256201-vjzfzshh 89 2 the the DT cord-256201-vjzfzshh 89 3 size size NN cord-256201-vjzfzshh 89 4 and and CC cord-256201-vjzfzshh 89 5 base base NN cord-256201-vjzfzshh 89 6 composition composition NN cord-256201-vjzfzshh 89 7 of of IN cord-256201-vjzfzshh 89 8 the the DT cord-256201-vjzfzshh 89 9 /X174 /X174 NFP cord-256201-vjzfzshh 89 10 DNA DNA NNP cord-256201-vjzfzshh 89 11 ( ( -LRB- cord-256201-vjzfzshh 89 12 5,386 5,386 CD cord-256201-vjzfzshh 89 13 bases basis NNS cord-256201-vjzfzshh 89 14 , , , cord-256201-vjzfzshh 89 15 31.3 31.3 CD cord-256201-vjzfzshh 89 16 % % NN cord-256201-vjzfzshh 89 17 T T NNP cord-256201-vjzfzshh 89 18 , , , cord-256201-vjzfzshh 89 19 24.0 24.0 CD cord-256201-vjzfzshh 89 20 % % NN cord-256201-vjzfzshh 89 21 A a NN cord-256201-vjzfzshh 89 22 , , , cord-256201-vjzfzshh 89 23 23.2 23.2 CD cord-256201-vjzfzshh 89 24 % % NN cord-256201-vjzfzshh 89 25 G g NN cord-256201-vjzfzshh 89 26 , , , cord-256201-vjzfzshh 89 27 and and CC cord-256201-vjzfzshh 89 28 21.5 21.5 CD cord-256201-vjzfzshh 89 29 % % NN cord-256201-vjzfzshh 89 30 C C NNP cord-256201-vjzfzshh 89 31 ) ) -RRB- cord-256201-vjzfzshh 89 32 , , , cord-256201-vjzfzshh 89 33 the the DT cord-256201-vjzfzshh 89 34 expected expect VBN cord-256201-vjzfzshh 89 35 number number NN cord-256201-vjzfzshh 89 36 of of IN cord-256201-vjzfzshh 89 37 GATC GATC NNP cord-256201-vjzfzshh 89 38 sequence sequence NN cord-256201-vjzfzshh 89 39 motifs motif NNS cord-256201-vjzfzshh 89 40 in in IN cord-256201-vjzfzshh 89 41 its -PRON- PRP$ cord-256201-vjzfzshh 89 42 genome genome NN cord-256201-vjzfzshh 89 43 is be VBZ cord-256201-vjzfzshh 89 44 0.313 0.313 CD cord-256201-vjzfzshh 89 45 Â â CD cord-256201-vjzfzshh 89 46 0.240 0.240 CD cord-256201-vjzfzshh 90 1 Â â NN cord-256201-vjzfzshh 90 2 0.232 0.232 CD cord-256201-vjzfzshh 90 3 Â â NN cord-256201-vjzfzshh 90 4 0.215 0.215 CD cord-256201-vjzfzshh 90 5 Â â CD cord-256201-vjzfzshh 90 6 5,386 5,386 CD cord-256201-vjzfzshh 90 7 ¼ ¼ CD cord-256201-vjzfzshh 90 8 20.18 20.18 CD cord-256201-vjzfzshh 90 9 . . . cord-256201-vjzfzshh 91 1 The the DT cord-256201-vjzfzshh 91 2 Poisson Poisson NNP cord-256201-vjzfzshh 91 3 probability probability NN cord-256201-vjzfzshh 91 4 of of IN cord-256201-vjzfzshh 91 5 observing observe VBG cord-256201-vjzfzshh 91 6 no no DT cord-256201-vjzfzshh 91 7 GATC GATC NNP cord-256201-vjzfzshh 91 8 motifs motif NNS cord-256201-vjzfzshh 91 9 is be VBZ cord-256201-vjzfzshh 91 10 extremely extremely RB cord-256201-vjzfzshh 91 11 low low JJ cord-256201-vjzfzshh 92 1 ( ( -LRB- cord-256201-vjzfzshh 92 2 P p NN cord-256201-vjzfzshh 92 3 ¼ ¼ CD cord-256201-vjzfzshh 92 4 1.72 1.72 CD cord-256201-vjzfzshh 92 5 Â â CD cord-256201-vjzfzshh 92 6 10 10 CD cord-256201-vjzfzshh 92 7 -9 -9 NNP cord-256201-vjzfzshh 92 8 ) ) -RRB- cord-256201-vjzfzshh 92 9 , , , cord-256201-vjzfzshh 92 10 thus thus RB cord-256201-vjzfzshh 92 11 indicating indicate VBG cord-256201-vjzfzshh 92 12 a a DT cord-256201-vjzfzshh 92 13 strong strong JJ cord-256201-vjzfzshh 92 14 avoidance avoidance NN cord-256201-vjzfzshh 92 15 of of IN cord-256201-vjzfzshh 92 16 these these DT cord-256201-vjzfzshh 92 17 motifs motif NNS cord-256201-vjzfzshh 92 18 . . . cord-256201-vjzfzshh 93 1 To to TO cord-256201-vjzfzshh 93 2 restore restore VB cord-256201-vjzfzshh 93 3 GATC GATC NNP cord-256201-vjzfzshh 93 4 usage usage NN cord-256201-vjzfzshh 93 5 in in IN cord-256201-vjzfzshh 93 6 /X174 /X174 NNP cord-256201-vjzfzshh 93 7 , , , cord-256201-vjzfzshh 93 8 we -PRON- PRP cord-256201-vjzfzshh 93 9 created create VBD cord-256201-vjzfzshh 93 10 a a DT cord-256201-vjzfzshh 93 11 mutant mutant JJ cord-256201-vjzfzshh 93 12 phage phage NN cord-256201-vjzfzshh 93 13 carrying carry VBG cord-256201-vjzfzshh 93 14 twenty twenty CD cord-256201-vjzfzshh 93 15 GATCs gatc NNS cord-256201-vjzfzshh 93 16 by by IN cord-256201-vjzfzshh 93 17 sequential sequential JJ cord-256201-vjzfzshh 93 18 addition addition NN cord-256201-vjzfzshh 93 19 of of IN cord-256201-vjzfzshh 93 20 these these DT cord-256201-vjzfzshh 93 21 sites site NNS cord-256201-vjzfzshh 93 22 into into IN cord-256201-vjzfzshh 93 23 the the DT cord-256201-vjzfzshh 93 24 WT WT NNP cord-256201-vjzfzshh 93 25 virus virus NN cord-256201-vjzfzshh 93 26 using use VBG cord-256201-vjzfzshh 93 27 site site NN cord-256201-vjzfzshh 93 28 - - HYPH cord-256201-vjzfzshh 93 29 directed direct VBN cord-256201-vjzfzshh 93 30 mutagenesis mutagenesis NN cord-256201-vjzfzshh 93 31 ( ( -LRB- cord-256201-vjzfzshh 93 32 Fig Fig NNP cord-256201-vjzfzshh 93 33 . . . cord-256201-vjzfzshh 93 34 1 1 CD cord-256201-vjzfzshh 93 35 ) ) -RRB- cord-256201-vjzfzshh 93 36 . . . cord-256201-vjzfzshh 94 1 The the DT cord-256201-vjzfzshh 94 2 twenty twenty CD cord-256201-vjzfzshh 94 3 GATC GATC NNP cord-256201-vjzfzshh 94 4 motifs motif NNS cord-256201-vjzfzshh 94 5 were be VBD cord-256201-vjzfzshh 94 6 evenly evenly RB cord-256201-vjzfzshh 94 7 distributed distribute VBN cord-256201-vjzfzshh 94 8 throughout throughout IN cord-256201-vjzfzshh 94 9 the the DT cord-256201-vjzfzshh 94 10 phage phage NN cord-256201-vjzfzshh 94 11 genome genome NN cord-256201-vjzfzshh 94 12 , , , cord-256201-vjzfzshh 94 13 the the DT cord-256201-vjzfzshh 94 14 greatest great JJS cord-256201-vjzfzshh 94 15 distance distance NN cord-256201-vjzfzshh 94 16 between between IN cord-256201-vjzfzshh 94 17 any any DT cord-256201-vjzfzshh 94 18 two two CD cord-256201-vjzfzshh 94 19 consecutive consecutive JJ cord-256201-vjzfzshh 94 20 of of IN cord-256201-vjzfzshh 94 21 them -PRON- PRP cord-256201-vjzfzshh 94 22 being be VBG cord-256201-vjzfzshh 94 23 456 456 CD cord-256201-vjzfzshh 94 24 bases basis NNS cord-256201-vjzfzshh 94 25 and and CC cord-256201-vjzfzshh 94 26 , , , cord-256201-vjzfzshh 94 27 wherein wherein WRB cord-256201-vjzfzshh 94 28 possible possible JJ cord-256201-vjzfzshh 94 29 , , , cord-256201-vjzfzshh 94 30 substitutions substitution NNS cord-256201-vjzfzshh 94 31 were be VBD cord-256201-vjzfzshh 94 32 made make VBN cord-256201-vjzfzshh 94 33 synonymous synonymous JJ cord-256201-vjzfzshh 94 34 to to TO cord-256201-vjzfzshh 94 35 minimize minimize VB cord-256201-vjzfzshh 94 36 their -PRON- PRP$ cord-256201-vjzfzshh 94 37 effects effect NNS cord-256201-vjzfzshh 94 38 on on IN cord-256201-vjzfzshh 94 39 protein protein NN cord-256201-vjzfzshh 94 40 function function NN cord-256201-vjzfzshh 94 41 . . . cord-256201-vjzfzshh 95 1 Given give VBN cord-256201-vjzfzshh 95 2 that that IN cord-256201-vjzfzshh 95 3 the the DT cord-256201-vjzfzshh 95 4 Dam Dam NNP cord-256201-vjzfzshh 95 5 / / SYM cord-256201-vjzfzshh 95 6 MutHLS muthls NN cord-256201-vjzfzshh 95 7 system system NN cord-256201-vjzfzshh 95 8 can can MD cord-256201-vjzfzshh 95 9 perform perform VB cord-256201-vjzfzshh 95 10 MMR MMR NNP cord-256201-vjzfzshh 95 11 at at IN cord-256201-vjzfzshh 95 12 a a DT cord-256201-vjzfzshh 95 13 distance distance NN cord-256201-vjzfzshh 95 14 of of IN cord-256201-vjzfzshh 95 15 up up IN cord-256201-vjzfzshh 95 16 to to TO cord-256201-vjzfzshh 95 17 1 1 CD cord-256201-vjzfzshh 95 18 kb kb NNS cord-256201-vjzfzshh 95 19 from from IN cord-256201-vjzfzshh 95 20 a a DT cord-256201-vjzfzshh 95 21 GATC GATC NNP cord-256201-vjzfzshh 95 22 ( ( -LRB- cord-256201-vjzfzshh 95 23 Modrich Modrich NNP cord-256201-vjzfzshh 95 24 and and CC cord-256201-vjzfzshh 95 25 Lahue Lahue NNP cord-256201-vjzfzshh 95 26 1996 1996 CD cord-256201-vjzfzshh 95 27 ) ) -RRB- cord-256201-vjzfzshh 95 28 , , , cord-256201-vjzfzshh 95 29 the the DT cord-256201-vjzfzshh 95 30 number number NN cord-256201-vjzfzshh 95 31 and and CC cord-256201-vjzfzshh 95 32 distribution distribution NN cord-256201-vjzfzshh 95 33 of of IN cord-256201-vjzfzshh 95 34 the the DT cord-256201-vjzfzshh 95 35 introduced introduce VBN cord-256201-vjzfzshh 95 36 GATCs GATCs NNP cord-256201-vjzfzshh 95 37 should should MD cord-256201-vjzfzshh 95 38 allow allow VB cord-256201-vjzfzshh 95 39 for for IN cord-256201-vjzfzshh 95 40 efficient efficient JJ cord-256201-vjzfzshh 95 41 MMR MMR NNP cord-256201-vjzfzshh 95 42 in in IN cord-256201-vjzfzshh 95 43 the the DT cord-256201-vjzfzshh 95 44 entire entire JJ cord-256201-vjzfzshh 95 45 phage phage NN cord-256201-vjzfzshh 95 46 genome genome NN cord-256201-vjzfzshh 95 47 . . . cord-256201-vjzfzshh 96 1 To to TO cord-256201-vjzfzshh 96 2 test test VB cord-256201-vjzfzshh 96 3 the the DT cord-256201-vjzfzshh 96 4 effect effect NN cord-256201-vjzfzshh 96 5 of of IN cord-256201-vjzfzshh 96 6 GATCs GATCs NNP cord-256201-vjzfzshh 96 7 on on IN cord-256201-vjzfzshh 96 8 the the DT cord-256201-vjzfzshh 96 9 viral viral JJ cord-256201-vjzfzshh 96 10 mutation mutation NN cord-256201-vjzfzshh 96 11 rate rate NN cord-256201-vjzfzshh 96 12 , , , cord-256201-vjzfzshh 96 13 we -PRON- PRP cord-256201-vjzfzshh 96 14 performed perform VBD cord-256201-vjzfzshh 96 15 Luria Luria NNP cord-256201-vjzfzshh 96 16 - - HYPH cord-256201-vjzfzshh 96 17 Delbrü Delbrü NNP cord-256201-vjzfzshh 96 18 ck ck POS cord-256201-vjzfzshh 96 19 fluctuation fluctuation NN cord-256201-vjzfzshh 96 20 tests test NNS cord-256201-vjzfzshh 96 21 for for IN cord-256201-vjzfzshh 96 22 the the DT cord-256201-vjzfzshh 96 23 WT WT NNP cord-256201-vjzfzshh 96 24 and and CC cord-256201-vjzfzshh 96 25 20GATC 20gatc CD cord-256201-vjzfzshh 96 26 viruses virus NNS cord-256201-vjzfzshh 96 27 . . . cord-256201-vjzfzshh 97 1 To to TO cord-256201-vjzfzshh 97 2 score score VB cord-256201-vjzfzshh 97 3 mutants mutant NNS cord-256201-vjzfzshh 97 4 phenotypically phenotypically RB cord-256201-vjzfzshh 97 5 , , , cord-256201-vjzfzshh 97 6 we -PRON- PRP cord-256201-vjzfzshh 97 7 used use VBD cord-256201-vjzfzshh 97 8 the the DT cord-256201-vjzfzshh 97 9 non non JJ cord-256201-vjzfzshh 97 10 - - JJ cord-256201-vjzfzshh 97 11 permissive permissive JJ cord-256201-vjzfzshh 97 12 E. E. NNP cord-256201-vjzfzshh 97 13 coli coli NNS cord-256201-vjzfzshh 97 14 C c NN cord-256201-vjzfzshh 97 15 mutant mutant NN cord-256201-vjzfzshh 97 16 gro87 gro87 CD cord-256201-vjzfzshh 97 17 , , , cord-256201-vjzfzshh 97 18 which which WDT cord-256201-vjzfzshh 97 19 carries carry VBZ cord-256201-vjzfzshh 97 20 a a DT cord-256201-vjzfzshh 97 21 mutation mutation NN cord-256201-vjzfzshh 97 22 in in IN cord-256201-vjzfzshh 97 23 the the DT cord-256201-vjzfzshh 97 24 DNA dna NN cord-256201-vjzfzshh 97 25 helicase helicase NN cord-256201-vjzfzshh 97 26 gene gene NN cord-256201-vjzfzshh 97 27 rep rep NNP cord-256201-vjzfzshh 97 28 that that WDT cord-256201-vjzfzshh 97 29 blocks block VBZ cord-256201-vjzfzshh 97 30 stage stage NN cord-256201-vjzfzshh 97 31 III III NNP cord-256201-vjzfzshh 97 32 ssDNA ssdna NN cord-256201-vjzfzshh 97 33 synthesis synthesis NN cord-256201-vjzfzshh 97 34 , , , cord-256201-vjzfzshh 97 35 preventing prevent VBG cord-256201-vjzfzshh 97 36 maturation maturation NN cord-256201-vjzfzshh 97 37 of of IN cord-256201-vjzfzshh 97 38 the the DT cord-256201-vjzfzshh 97 39 WT WT NNP cord-256201-vjzfzshh 97 40 phage phage NN cord-256201-vjzfzshh 97 41 ( ( -LRB- cord-256201-vjzfzshh 97 42 Ekechukwu Ekechukwu NNP cord-256201-vjzfzshh 97 43 , , , cord-256201-vjzfzshh 97 44 Oberste Oberste NNP cord-256201-vjzfzshh 97 45 , , , cord-256201-vjzfzshh 97 46 and and CC cord-256201-vjzfzshh 97 47 Fane Fane NNP cord-256201-vjzfzshh 97 48 1995 1995 CD cord-256201-vjzfzshh 97 49 ) ) -RRB- cord-256201-vjzfzshh 97 50 . . . cord-256201-vjzfzshh 98 1 The the DT cord-256201-vjzfzshh 98 2 phage phage NN cord-256201-vjzfzshh 98 3 can can MD cord-256201-vjzfzshh 98 4 overcome overcome VB cord-256201-vjzfzshh 98 5 this this DT cord-256201-vjzfzshh 98 6 restriction restriction NN cord-256201-vjzfzshh 98 7 by by IN cord-256201-vjzfzshh 98 8 changing change VBG cord-256201-vjzfzshh 98 9 certain certain JJ cord-256201-vjzfzshh 98 10 amino amino NN cord-256201-vjzfzshh 98 11 acid acid NN cord-256201-vjzfzshh 98 12 residues residue NNS cord-256201-vjzfzshh 98 13 in in IN cord-256201-vjzfzshh 98 14 the the DT cord-256201-vjzfzshh 98 15 N n CD cord-256201-vjzfzshh 98 16 - - HYPH cord-256201-vjzfzshh 98 17 terminal terminal NN cord-256201-vjzfzshh 98 18 region region NN cord-256201-vjzfzshh 98 19 of of IN cord-256201-vjzfzshh 98 20 protein protein NN cord-256201-vjzfzshh 98 21 A A NNP cord-256201-vjzfzshh 98 22 , , , cord-256201-vjzfzshh 98 23 an an DT cord-256201-vjzfzshh 98 24 endonuclease endonuclease NN cord-256201-vjzfzshh 98 25 that that WDT cord-256201-vjzfzshh 98 26 nicks nick VBZ cord-256201-vjzfzshh 98 27 the the DT cord-256201-vjzfzshh 98 28 negative negative JJ cord-256201-vjzfzshh 98 29 strand strand NN cord-256201-vjzfzshh 98 30 of of IN cord-256201-vjzfzshh 98 31 the the DT cord-256201-vjzfzshh 98 32 supercoiled supercoiled JJ cord-256201-vjzfzshh 98 33 phage phage NN cord-256201-vjzfzshh 98 34 DNA dna NN cord-256201-vjzfzshh 98 35 , , , cord-256201-vjzfzshh 98 36 and and CC cord-256201-vjzfzshh 98 37 these these DT cord-256201-vjzfzshh 98 38 protein protein NN cord-256201-vjzfzshh 98 39 changes change NNS cord-256201-vjzfzshh 98 40 can can MD cord-256201-vjzfzshh 98 41 be be VB cord-256201-vjzfzshh 98 42 conferred confer VBN cord-256201-vjzfzshh 98 43 by by IN cord-256201-vjzfzshh 98 44 at at RB cord-256201-vjzfzshh 98 45 least least RBS cord-256201-vjzfzshh 98 46 seven seven CD cord-256201-vjzfzshh 98 47 different different JJ cord-256201-vjzfzshh 98 48 nucleotide nucleotide JJ cord-256201-vjzfzshh 98 49 substitutions substitution NNS cord-256201-vjzfzshh 98 50 ( ( -LRB- cord-256201-vjzfzshh 98 51 Cuevas Cuevas NNP cord-256201-vjzfzshh 98 52 , , , cord-256201-vjzfzshh 98 53 Duffy Duffy NNP cord-256201-vjzfzshh 98 54 , , , cord-256201-vjzfzshh 98 55 and and CC cord-256201-vjzfzshh 98 56 Sanjuá Sanjuá NNP cord-256201-vjzfzshh 98 57 n n NNP cord-256201-vjzfzshh 98 58 2009 2009 CD cord-256201-vjzfzshh 98 59 ) ) -RRB- cord-256201-vjzfzshh 98 60 . . . cord-256201-vjzfzshh 99 1 By by IN cord-256201-vjzfzshh 99 2 growing grow VBG cord-256201-vjzfzshh 99 3 the the DT cord-256201-vjzfzshh 99 4 virus virus NN cord-256201-vjzfzshh 99 5 in in IN cord-256201-vjzfzshh 99 6 permissive permissive JJ cord-256201-vjzfzshh 99 7 cells cell NNS cord-256201-vjzfzshh 99 8 and and CC cord-256201-vjzfzshh 99 9 performing perform VBG cord-256201-vjzfzshh 99 10 plaque plaque NN cord-256201-vjzfzshh 99 11 assays assay NNS cord-256201-vjzfzshh 99 12 in in IN cord-256201-vjzfzshh 99 13 gro87 gro87 CD cord-256201-vjzfzshh 99 14 cells cell NNS cord-256201-vjzfzshh 99 15 to to TO cord-256201-vjzfzshh 99 16 score score VB cord-256201-vjzfzshh 99 17 mutations mutation NNS cord-256201-vjzfzshh 99 18 , , , cord-256201-vjzfzshh 99 19 we -PRON- PRP cord-256201-vjzfzshh 99 20 obtained obtain VBD cord-256201-vjzfzshh 99 21 an an DT cord-256201-vjzfzshh 99 22 estimated estimate VBN cord-256201-vjzfzshh 99 23 mutation mutation NN cord-256201-vjzfzshh 99 24 rate rate NN cord-256201-vjzfzshh 99 25 for for IN cord-256201-vjzfzshh 99 26 the the DT cord-256201-vjzfzshh 99 27 WT WT NNP cord-256201-vjzfzshh 99 28 of of IN cord-256201-vjzfzshh 99 29 ( ( -LRB- cord-256201-vjzfzshh 99 30 1.58 1.58 CD cord-256201-vjzfzshh 99 31 6 6 CD cord-256201-vjzfzshh 99 32 0.44 0.44 CD cord-256201-vjzfzshh 99 33 ) ) -RRB- cord-256201-vjzfzshh 100 1 Â â NN cord-256201-vjzfzshh 101 1 10 10 CD cord-256201-vjzfzshh 101 2 -6 -6 NNP cord-256201-vjzfzshh 101 3 m m NNP cord-256201-vjzfzshh 101 4 / / SYM cord-256201-vjzfzshh 101 5 n n NNP cord-256201-vjzfzshh 101 6 / / SYM cord-256201-vjzfzshh 101 7 r r NNP cord-256201-vjzfzshh 101 8 , , , cord-256201-vjzfzshh 101 9 a a DT cord-256201-vjzfzshh 101 10 value value NN cord-256201-vjzfzshh 101 11 consistent consistent JJ cord-256201-vjzfzshh 101 12 with with IN cord-256201-vjzfzshh 101 13 previous previous JJ cord-256201-vjzfzshh 101 14 studies study NNS cord-256201-vjzfzshh 101 15 ( ( -LRB- cord-256201-vjzfzshh 101 16 Raney Raney NNP cord-256201-vjzfzshh 101 17 , , , cord-256201-vjzfzshh 101 18 Delongchamp Delongchamp NNP cord-256201-vjzfzshh 101 19 , , , cord-256201-vjzfzshh 101 20 and and CC cord-256201-vjzfzshh 101 21 Valentine Valentine NNP cord-256201-vjzfzshh 101 22 2004 2004 CD cord-256201-vjzfzshh 101 23 ; ; : cord-256201-vjzfzshh 101 24 Cuevas Cuevas NNP cord-256201-vjzfzshh 101 25 , , , cord-256201-vjzfzshh 101 26 Duffy Duffy NNP cord-256201-vjzfzshh 101 27 , , , cord-256201-vjzfzshh 101 28 and and CC cord-256201-vjzfzshh 101 29 Sanjuá Sanjuá NNP cord-256201-vjzfzshh 101 30 n n NNP cord-256201-vjzfzshh 101 31 2009 2009 CD cord-256201-vjzfzshh 101 32 ) ) -RRB- cord-256201-vjzfzshh 101 33 . . . cord-256201-vjzfzshh 102 1 In in IN cord-256201-vjzfzshh 102 2 contrast contrast NN cord-256201-vjzfzshh 102 3 , , , cord-256201-vjzfzshh 102 4 the the DT cord-256201-vjzfzshh 102 5 rate rate NN cord-256201-vjzfzshh 102 6 of of IN cord-256201-vjzfzshh 102 7 the the DT cord-256201-vjzfzshh 102 8 20GATC 20gatc CD cord-256201-vjzfzshh 102 9 virus virus NN cord-256201-vjzfzshh 102 10 was be VBD cord-256201-vjzfzshh 102 11 ( ( -LRB- cord-256201-vjzfzshh 102 12 2.06 2.06 CD cord-256201-vjzfzshh 102 13 6 6 CD cord-256201-vjzfzshh 102 14 0.15 0.15 CD cord-256201-vjzfzshh 102 15 ) ) -RRB- cord-256201-vjzfzshh 103 1 Â â NN cord-256201-vjzfzshh 104 1 10 10 CD cord-256201-vjzfzshh 104 2 -7 -7 NNP cord-256201-vjzfzshh 104 3 m m NNP cord-256201-vjzfzshh 104 4 / / SYM cord-256201-vjzfzshh 104 5 n n NNP cord-256201-vjzfzshh 104 6 / / SYM cord-256201-vjzfzshh 104 7 r r NNP cord-256201-vjzfzshh 104 8 , , , cord-256201-vjzfzshh 104 9 revealing reveal VBG cord-256201-vjzfzshh 104 10 a a DT cord-256201-vjzfzshh 104 11 7.7-fold 7.7-fold CD cord-256201-vjzfzshh 104 12 reduction reduction NN cord-256201-vjzfzshh 104 13 compared compare VBN cord-256201-vjzfzshh 104 14 with with IN cord-256201-vjzfzshh 104 15 the the DT cord-256201-vjzfzshh 104 16 WT WT NNP cord-256201-vjzfzshh 104 17 ( ( -LRB- cord-256201-vjzfzshh 104 18 t t NN cord-256201-vjzfzshh 104 19 - - HYPH cord-256201-vjzfzshh 104 20 test test NN cord-256201-vjzfzshh 104 21 : : : cord-256201-vjzfzshh 105 1 P p NN cord-256201-vjzfzshh 105 2 < < XX cord-256201-vjzfzshh 105 3 0.001 0.001 CD cord-256201-vjzfzshh 105 4 ; ; : cord-256201-vjzfzshh 105 5 Table table NN cord-256201-vjzfzshh 105 6 1 1 CD cord-256201-vjzfzshh 106 1 ; ; : cord-256201-vjzfzshh 106 2 Fig Fig NNP cord-256201-vjzfzshh 106 3 . . . cord-256201-vjzfzshh 106 4 2A 2a CD cord-256201-vjzfzshh 106 5 ) ) -RRB- cord-256201-vjzfzshh 106 6 . . . cord-256201-vjzfzshh 107 1 The the DT cord-256201-vjzfzshh 107 2 estimated estimate VBN cord-256201-vjzfzshh 107 3 growth growth NN cord-256201-vjzfzshh 107 4 rate rate NN cord-256201-vjzfzshh 107 5 was be VBD cord-256201-vjzfzshh 107 6 similar similar JJ cord-256201-vjzfzshh 107 7 for for IN cord-256201-vjzfzshh 107 8 the the DT cord-256201-vjzfzshh 107 9 WT WT NNP cord-256201-vjzfzshh 108 1 ( ( -LRB- cord-256201-vjzfzshh 108 2 r r NNP cord-256201-vjzfzshh 108 3 ¼ ¼ NNP cord-256201-vjzfzshh 108 4 8.11 8.11 CD cord-256201-vjzfzshh 108 5 6 6 CD cord-256201-vjzfzshh 108 6 0.29 0.29 CD cord-256201-vjzfzshh 108 7 h h NN cord-256201-vjzfzshh 108 8 -1 -1 NN cord-256201-vjzfzshh 108 9 ) ) -RRB- cord-256201-vjzfzshh 108 10 and and CC cord-256201-vjzfzshh 108 11 the the DT cord-256201-vjzfzshh 108 12 20GATC 20gatc CD cord-256201-vjzfzshh 108 13 viruses virus NNS cord-256201-vjzfzshh 108 14 ( ( -LRB- cord-256201-vjzfzshh 108 15 r r NNP cord-256201-vjzfzshh 108 16 ¼ ¼ CD cord-256201-vjzfzshh 108 17 8.68 8.68 CD cord-256201-vjzfzshh 108 18 6 6 CD cord-256201-vjzfzshh 108 19 0.29 0.29 CD cord-256201-vjzfzshh 108 20 h h NN cord-256201-vjzfzshh 108 21 -1 -1 NN cord-256201-vjzfzshh 108 22 ; ; : cord-256201-vjzfzshh 108 23 t t NN cord-256201-vjzfzshh 108 24 - - HYPH cord-256201-vjzfzshh 108 25 test test NN cord-256201-vjzfzshh 108 26 : : : cord-256201-vjzfzshh 109 1 P p NN cord-256201-vjzfzshh 109 2 ¼ ¼ CD cord-256201-vjzfzshh 109 3 0.406 0.406 CD cord-256201-vjzfzshh 109 4 ; ; : cord-256201-vjzfzshh 109 5 Table table NN cord-256201-vjzfzshh 109 6 1 1 CD cord-256201-vjzfzshh 109 7 ; ; : cord-256201-vjzfzshh 109 8 Fig Fig NNP cord-256201-vjzfzshh 109 9 . . . cord-256201-vjzfzshh 109 10 2B 2B NNP cord-256201-vjzfzshh 109 11 ) ) -RRB- cord-256201-vjzfzshh 109 12 , , , cord-256201-vjzfzshh 109 13 indicating indicate VBG cord-256201-vjzfzshh 109 14 that that IN cord-256201-vjzfzshh 109 15 these these DT cord-256201-vjzfzshh 109 16 substitutions substitution NNS cord-256201-vjzfzshh 109 17 had have VBD cord-256201-vjzfzshh 109 18 no no DT cord-256201-vjzfzshh 109 19 significant significant JJ cord-256201-vjzfzshh 109 20 impact impact NN cord-256201-vjzfzshh 109 21 on on IN cord-256201-vjzfzshh 109 22 short short JJ cord-256201-vjzfzshh 109 23 - - HYPH cord-256201-vjzfzshh 109 24 term term NN cord-256201-vjzfzshh 109 25 viral viral JJ cord-256201-vjzfzshh 109 26 fitness fitness NN cord-256201-vjzfzshh 109 27 . . . cord-256201-vjzfzshh 110 1 These these DT cord-256201-vjzfzshh 110 2 findings finding NNS cord-256201-vjzfzshh 110 3 confirm confirm VBP cord-256201-vjzfzshh 110 4 our -PRON- PRP$ cord-256201-vjzfzshh 110 5 previous previous JJ cord-256201-vjzfzshh 110 6 results result NNS cord-256201-vjzfzshh 110 7 obtained obtain VBN cord-256201-vjzfzshh 110 8 with with IN cord-256201-vjzfzshh 110 9 a a DT cord-256201-vjzfzshh 110 10 mutant mutant JJ cord-256201-vjzfzshh 110 11 phage phage NN cord-256201-vjzfzshh 110 12 carrying carry VBG cord-256201-vjzfzshh 110 13 seven seven CD cord-256201-vjzfzshh 110 14 GATC GATC NNP cord-256201-vjzfzshh 110 15 sites site NNS cord-256201-vjzfzshh 110 16 ( ( -LRB- cord-256201-vjzfzshh 110 17 Cuevas Cuevas NNP cord-256201-vjzfzshh 110 18 , , , cord-256201-vjzfzshh 110 19 Pereira Pereira NNP cord-256201-vjzfzshh 110 20 - - HYPH cord-256201-vjzfzshh 110 21 Gomez Gomez NNP cord-256201-vjzfzshh 110 22 , , , cord-256201-vjzfzshh 110 23 and and CC cord-256201-vjzfzshh 110 24 Sanjuá Sanjuá NNP cord-256201-vjzfzshh 110 25 n n NNP cord-256201-vjzfzshh 110 26 2011 2011 CD cord-256201-vjzfzshh 110 27 ) ) -RRB- cord-256201-vjzfzshh 110 28 . . . cord-256201-vjzfzshh 111 1 Since since IN cord-256201-vjzfzshh 111 2 MMR MMR NNP cord-256201-vjzfzshh 111 3 relies rely VBZ cord-256201-vjzfzshh 111 4 on on IN cord-256201-vjzfzshh 111 5 the the DT cord-256201-vjzfzshh 111 6 presence presence NN cord-256201-vjzfzshh 111 7 of of IN cord-256201-vjzfzshh 111 8 GATCs GATCs NNPS cord-256201-vjzfzshh 111 9 in in IN cord-256201-vjzfzshh 111 10 the the DT cord-256201-vjzfzshh 111 11 vicinity vicinity NN cord-256201-vjzfzshh 111 12 of of IN cord-256201-vjzfzshh 111 13 the the DT cord-256201-vjzfzshh 111 14 mismatch mismatch NN cord-256201-vjzfzshh 111 15 , , , cord-256201-vjzfzshh 111 16 addition addition NN cord-256201-vjzfzshh 111 17 of of IN cord-256201-vjzfzshh 111 18 GATCs GATCs NNPS cord-256201-vjzfzshh 111 19 in in IN cord-256201-vjzfzshh 111 20 this this DT cord-256201-vjzfzshh 111 21 region region NN cord-256201-vjzfzshh 111 22 should should MD cord-256201-vjzfzshh 111 23 suffice suffice VB cord-256201-vjzfzshh 111 24 to to TO cord-256201-vjzfzshh 111 25 yield yield VB cord-256201-vjzfzshh 111 26 similarly similarly RB cord-256201-vjzfzshh 111 27 low low JJ cord-256201-vjzfzshh 111 28 mutation mutation NN cord-256201-vjzfzshh 111 29 rates rate NNS cord-256201-vjzfzshh 111 30 . . . cord-256201-vjzfzshh 112 1 On on IN cord-256201-vjzfzshh 112 2 the the DT cord-256201-vjzfzshh 112 3 basis basis NN cord-256201-vjzfzshh 112 4 of of IN cord-256201-vjzfzshh 112 5 this this DT cord-256201-vjzfzshh 112 6 , , , cord-256201-vjzfzshh 112 7 we -PRON- PRP cord-256201-vjzfzshh 112 8 constructed construct VBD cord-256201-vjzfzshh 112 9 a a DT cord-256201-vjzfzshh 112 10 virus virus NN cord-256201-vjzfzshh 112 11 with with IN cord-256201-vjzfzshh 112 12 four four CD cord-256201-vjzfzshh 112 13 GATCs GATCs NNPS cord-256201-vjzfzshh 112 14 located locate VBN cord-256201-vjzfzshh 112 15 between between IN cord-256201-vjzfzshh 112 16 genome genome NN cord-256201-vjzfzshh 112 17 positions position NNS cord-256201-vjzfzshh 112 18 3671 3671 CD cord-256201-vjzfzshh 112 19 and and CC cord-256201-vjzfzshh 112 20 4151 4151 CD cord-256201-vjzfzshh 112 21 , , , cord-256201-vjzfzshh 112 22 which which WDT cord-256201-vjzfzshh 112 23 were be VBD cord-256201-vjzfzshh 112 24 within within IN cord-256201-vjzfzshh 112 25 0.5 0.5 CD cord-256201-vjzfzshh 112 26 kb kb CD cord-256201-vjzfzshh 112 27 of of IN cord-256201-vjzfzshh 112 28 known know VBN cord-256201-vjzfzshh 112 29 groresistance groresistance NN cord-256201-vjzfzshh 112 30 mutations mutation NNS cord-256201-vjzfzshh 112 31 ( ( -LRB- cord-256201-vjzfzshh 112 32 Fig Fig NNP cord-256201-vjzfzshh 112 33 . . NNP cord-256201-vjzfzshh 112 34 1 1 CD cord-256201-vjzfzshh 112 35 ) ) -RRB- cord-256201-vjzfzshh 112 36 . . . cord-256201-vjzfzshh 113 1 However however RB cord-256201-vjzfzshh 113 2 , , , cord-256201-vjzfzshh 113 3 surprisingly surprisingly RB cord-256201-vjzfzshh 113 4 , , , cord-256201-vjzfzshh 113 5 the the DT cord-256201-vjzfzshh 113 6 mutation mutation NN cord-256201-vjzfzshh 113 7 rate rate NN cord-256201-vjzfzshh 113 8 of of IN cord-256201-vjzfzshh 113 9 this this DT cord-256201-vjzfzshh 113 10 four four CD cord-256201-vjzfzshh 113 11 GATC GATC NNP cord-256201-vjzfzshh 113 12 virus virus NN cord-256201-vjzfzshh 113 13 was be VBD cord-256201-vjzfzshh 113 14 significantly significantly RB cord-256201-vjzfzshh 113 15 higher high JJR cord-256201-vjzfzshh 113 16 than than IN cord-256201-vjzfzshh 113 17 that that DT cord-256201-vjzfzshh 113 18 of of IN cord-256201-vjzfzshh 113 19 the the DT cord-256201-vjzfzshh 113 20 20GATC 20gatc CD cord-256201-vjzfzshh 113 21 virus virus NN cord-256201-vjzfzshh 113 22 ( ( -LRB- cord-256201-vjzfzshh 113 23 t t NN cord-256201-vjzfzshh 113 24 - - HYPH cord-256201-vjzfzshh 113 25 test test NN cord-256201-vjzfzshh 113 26 : : : cord-256201-vjzfzshh 113 27 P p NN cord-256201-vjzfzshh 113 28 ¼ ¼ CD cord-256201-vjzfzshh 113 29 0.001 0.001 CD cord-256201-vjzfzshh 113 30 ) ) -RRB- cord-256201-vjzfzshh 113 31 and and CC cord-256201-vjzfzshh 113 32 similar similar JJ cord-256201-vjzfzshh 113 33 to to IN cord-256201-vjzfzshh 113 34 the the DT cord-256201-vjzfzshh 113 35 WT WT NNP cord-256201-vjzfzshh 113 36 rate rate NN cord-256201-vjzfzshh 113 37 ( ( -LRB- cord-256201-vjzfzshh 113 38 P p NN cord-256201-vjzfzshh 113 39 ¼ ¼ CD cord-256201-vjzfzshh 113 40 0.832 0.832 CD cord-256201-vjzfzshh 113 41 ) ) -RRB- cord-256201-vjzfzshh 113 42 . . . cord-256201-vjzfzshh 114 1 In in IN cord-256201-vjzfzshh 114 2 light light NN cord-256201-vjzfzshh 114 3 of of IN cord-256201-vjzfzshh 114 4 this this DT cord-256201-vjzfzshh 114 5 result result NN cord-256201-vjzfzshh 114 6 and and CC cord-256201-vjzfzshh 114 7 since since IN cord-256201-vjzfzshh 114 8 Dam dam JJ cord-256201-vjzfzshh 114 9 methylation methylation NN cord-256201-vjzfzshh 114 10 of of IN cord-256201-vjzfzshh 114 11 GATC GATC NNP cord-256201-vjzfzshh 114 12 adenosines adenosines NNP cord-256201-vjzfzshh 114 13 is be VBZ cord-256201-vjzfzshh 114 14 required require VBN cord-256201-vjzfzshh 114 15 for for IN cord-256201-vjzfzshh 114 16 MMR MMR NNP cord-256201-vjzfzshh 114 17 , , , cord-256201-vjzfzshh 114 18 we -PRON- PRP cord-256201-vjzfzshh 114 19 sought seek VBD cord-256201-vjzfzshh 114 20 to to TO cord-256201-vjzfzshh 114 21 determine determine VB cord-256201-vjzfzshh 114 22 the the DT cord-256201-vjzfzshh 114 23 methylation methylation NN cord-256201-vjzfzshh 114 24 status status NN cord-256201-vjzfzshh 114 25 of of IN cord-256201-vjzfzshh 114 26 the the DT cord-256201-vjzfzshh 114 27 4GATC 4gatc CD cord-256201-vjzfzshh 114 28 /X174 /x174 SYM cord-256201-vjzfzshh 114 29 DNA dna NN cord-256201-vjzfzshh 114 30 . . . cord-256201-vjzfzshh 115 1 To to TO cord-256201-vjzfzshh 115 2 do do VB cord-256201-vjzfzshh 115 3 so so RB cord-256201-vjzfzshh 115 4 , , , cord-256201-vjzfzshh 115 5 we -PRON- PRP cord-256201-vjzfzshh 115 6 purified purify VBD cord-256201-vjzfzshh 115 7 the the DT cord-256201-vjzfzshh 115 8 dsDNA dsdna RB cord-256201-vjzfzshh 115 9 replicative replicative JJ cord-256201-vjzfzshh 115 10 form form NN cord-256201-vjzfzshh 115 11 , , , cord-256201-vjzfzshh 115 12 linearized linearize VBN cord-256201-vjzfzshh 115 13 it -PRON- PRP cord-256201-vjzfzshh 115 14 , , , cord-256201-vjzfzshh 115 15 and and CC cord-256201-vjzfzshh 115 16 treated treat VBD cord-256201-vjzfzshh 115 17 it -PRON- PRP cord-256201-vjzfzshh 115 18 with with IN cord-256201-vjzfzshh 115 19 the the DT cord-256201-vjzfzshh 115 20 DpnI DpnI NNP cord-256201-vjzfzshh 115 21 restriction restriction NN cord-256201-vjzfzshh 115 22 endonuclease endonuclease NN cord-256201-vjzfzshh 115 23 , , , cord-256201-vjzfzshh 115 24 which which WDT cord-256201-vjzfzshh 115 25 selectively selectively RB cord-256201-vjzfzshh 115 26 digests digest VBZ cord-256201-vjzfzshh 115 27 methylated methylate VBN cord-256201-vjzfzshh 115 28 and and CC cord-256201-vjzfzshh 115 29 hemi hemi NN cord-256201-vjzfzshh 115 30 - - HYPH cord-256201-vjzfzshh 115 31 methylated methylate VBN cord-256201-vjzfzshh 115 32 GATCs GATCs NNPS cord-256201-vjzfzshh 115 33 . . . cord-256201-vjzfzshh 116 1 Although although IN cord-256201-vjzfzshh 116 2 DpnI DpnI NNP cord-256201-vjzfzshh 116 3 produced produce VBD cord-256201-vjzfzshh 116 4 restriction restriction NN cord-256201-vjzfzshh 116 5 bands band NNS cord-256201-vjzfzshh 116 6 of of IN cord-256201-vjzfzshh 116 7 the the DT cord-256201-vjzfzshh 116 8 expected expect VBN cord-256201-vjzfzshh 116 9 size size NN cord-256201-vjzfzshh 116 10 , , , cord-256201-vjzfzshh 116 11 digestion digestion NN cord-256201-vjzfzshh 116 12 was be VBD cord-256201-vjzfzshh 116 13 only only RB cord-256201-vjzfzshh 116 14 partial partial JJ cord-256201-vjzfzshh 116 15 ( ( -LRB- cord-256201-vjzfzshh 116 16 Fig fig NN cord-256201-vjzfzshh 116 17 . . . cord-256201-vjzfzshh 116 18 3 3 CD cord-256201-vjzfzshh 116 19 ) ) -RRB- cord-256201-vjzfzshh 116 20 . . . cord-256201-vjzfzshh 117 1 To to TO cord-256201-vjzfzshh 117 2 test test VB cord-256201-vjzfzshh 117 3 whether whether IN cord-256201-vjzfzshh 117 4 this this DT cord-256201-vjzfzshh 117 5 could could MD cord-256201-vjzfzshh 117 6 be be VB cord-256201-vjzfzshh 117 7 explained explain VBN cord-256201-vjzfzshh 117 8 by by IN cord-256201-vjzfzshh 117 9 incomplete incomplete JJ cord-256201-vjzfzshh 117 10 DNA dna NN cord-256201-vjzfzshh 117 11 methylation methylation NN cord-256201-vjzfzshh 117 12 , , , cord-256201-vjzfzshh 117 13 we -PRON- PRP cord-256201-vjzfzshh 117 14 performed perform VBD cord-256201-vjzfzshh 117 15 the the DT cord-256201-vjzfzshh 117 16 same same JJ cord-256201-vjzfzshh 117 17 restriction restriction NN cord-256201-vjzfzshh 117 18 analysis analysis NN cord-256201-vjzfzshh 117 19 using use VBG cord-256201-vjzfzshh 117 20 MboI MboI NNP cord-256201-vjzfzshh 117 21 , , , cord-256201-vjzfzshh 117 22 which which WDT cord-256201-vjzfzshh 117 23 also also RB cord-256201-vjzfzshh 117 24 recognizes recognize VBZ cord-256201-vjzfzshh 117 25 GATC GATC NNP cord-256201-vjzfzshh 117 26 sites site NNS cord-256201-vjzfzshh 117 27 but but CC cord-256201-vjzfzshh 117 28 digests digest VBZ cord-256201-vjzfzshh 117 29 them -PRON- PRP cord-256201-vjzfzshh 117 30 only only RB cord-256201-vjzfzshh 117 31 in in IN cord-256201-vjzfzshh 117 32 their -PRON- PRP$ cord-256201-vjzfzshh 117 33 non non JJ cord-256201-vjzfzshh 117 34 - - JJ cord-256201-vjzfzshh 117 35 methylated methylated JJ cord-256201-vjzfzshh 117 36 form form NN cord-256201-vjzfzshh 117 37 . . . cord-256201-vjzfzshh 118 1 MboI MboI NNP cord-256201-vjzfzshh 118 2 also also RB cord-256201-vjzfzshh 118 3 produced produce VBD cord-256201-vjzfzshh 118 4 restriction restriction NN cord-256201-vjzfzshh 118 5 bands band NNS cord-256201-vjzfzshh 118 6 , , , cord-256201-vjzfzshh 118 7 thus thus RB cord-256201-vjzfzshh 118 8 confirming confirm VBG cord-256201-vjzfzshh 118 9 that that IN cord-256201-vjzfzshh 118 10 a a DT cord-256201-vjzfzshh 118 11 fraction fraction NN cord-256201-vjzfzshh 118 12 of of IN cord-256201-vjzfzshh 118 13 the the DT cord-256201-vjzfzshh 118 14 phage phage NN cord-256201-vjzfzshh 118 15 dsDNA dsdna RB cord-256201-vjzfzshh 118 16 was be VBD cord-256201-vjzfzshh 118 17 not not RB cord-256201-vjzfzshh 118 18 methylated methylate VBN cord-256201-vjzfzshh 118 19 . . . cord-256201-vjzfzshh 119 1 Image image NN cord-256201-vjzfzshh 119 2 analysis analysis NN cord-256201-vjzfzshh 119 3 indicated indicate VBD cord-256201-vjzfzshh 119 4 that that IN cord-256201-vjzfzshh 119 5 82 82 CD cord-256201-vjzfzshh 119 6 per per NN cord-256201-vjzfzshh 119 7 cent cent NN cord-256201-vjzfzshh 119 8 of of IN cord-256201-vjzfzshh 119 9 DNA DNA NNP cord-256201-vjzfzshh 119 10 was be VBD cord-256201-vjzfzshh 119 11 digested digest VBN cord-256201-vjzfzshh 119 12 by by IN cord-256201-vjzfzshh 119 13 MboI MboI NNP cord-256201-vjzfzshh 119 14 and and CC cord-256201-vjzfzshh 119 15 thus thus RB cord-256201-vjzfzshh 119 16 lacked lack VBD cord-256201-vjzfzshh 119 17 at at IN cord-256201-vjzfzshh 119 18 least least RBS cord-256201-vjzfzshh 119 19 one one CD cord-256201-vjzfzshh 119 20 of of IN cord-256201-vjzfzshh 119 21 the the DT cord-256201-vjzfzshh 119 22 four four CD cord-256201-vjzfzshh 119 23 possible possible JJ cord-256201-vjzfzshh 119 24 methyl methyl NN cord-256201-vjzfzshh 119 25 groups group NNS cord-256201-vjzfzshh 119 26 , , , cord-256201-vjzfzshh 119 27 whereas whereas IN cord-256201-vjzfzshh 119 28 12 12 CD cord-256201-vjzfzshh 119 29 per per NN cord-256201-vjzfzshh 119 30 cent cent NN cord-256201-vjzfzshh 119 31 was be VBD cord-256201-vjzfzshh 119 32 undigested undigested JJ cord-256201-vjzfzshh 119 33 by by IN cord-256201-vjzfzshh 119 34 DpnI DpnI NNP cord-256201-vjzfzshh 119 35 , , , cord-256201-vjzfzshh 119 36 thus thus RB cord-256201-vjzfzshh 119 37 lacking lack VBG cord-256201-vjzfzshh 119 38 all all DT cord-256201-vjzfzshh 119 39 four four CD cord-256201-vjzfzshh 119 40 methyl methyl NN cord-256201-vjzfzshh 119 41 groups group NNS cord-256201-vjzfzshh 119 42 . . . cord-256201-vjzfzshh 120 1 Overall overall RB cord-256201-vjzfzshh 120 2 , , , cord-256201-vjzfzshh 120 3 the the DT cord-256201-vjzfzshh 120 4 similar similar JJ cord-256201-vjzfzshh 120 5 efficiency efficiency NN cord-256201-vjzfzshh 120 6 shown show VBN cord-256201-vjzfzshh 120 7 by by IN cord-256201-vjzfzshh 120 8 DpnI DpnI NNP cord-256201-vjzfzshh 120 9 and and CC cord-256201-vjzfzshh 120 10 MboI MboI NNP cord-256201-vjzfzshh 120 11 suggests suggest VBZ cord-256201-vjzfzshh 120 12 that that IN cord-256201-vjzfzshh 120 13 roughly roughly RB cord-256201-vjzfzshh 120 14 half half NN cord-256201-vjzfzshh 120 15 of of IN cord-256201-vjzfzshh 120 16 GATC GATC NNP cord-256201-vjzfzshh 120 17 motifs motif NNS cord-256201-vjzfzshh 120 18 were be VBD cord-256201-vjzfzshh 120 19 methylated methylate VBN cord-256201-vjzfzshh 120 20 , , , cord-256201-vjzfzshh 120 21 although although IN cord-256201-vjzfzshh 120 22 more more JJR cord-256201-vjzfzshh 120 23 detailed detailed JJ cord-256201-vjzfzshh 120 24 analyses analysis NNS cord-256201-vjzfzshh 120 25 would would MD cord-256201-vjzfzshh 120 26 be be VB cord-256201-vjzfzshh 120 27 required require VBN cord-256201-vjzfzshh 120 28 to to TO cord-256201-vjzfzshh 120 29 reliably reliably RB cord-256201-vjzfzshh 120 30 infer infer VB cord-256201-vjzfzshh 120 31 this this DT cord-256201-vjzfzshh 120 32 fraction fraction NN cord-256201-vjzfzshh 120 33 . . . cord-256201-vjzfzshh 121 1 We -PRON- PRP cord-256201-vjzfzshh 121 2 verified verify VBD cord-256201-vjzfzshh 121 3 that that IN cord-256201-vjzfzshh 121 4 under under NN cord-256201-vjzfzshh 121 5 - - HYPH cord-256201-vjzfzshh 121 6 methylation methylation NN cord-256201-vjzfzshh 121 7 was be VBD cord-256201-vjzfzshh 121 8 not not RB cord-256201-vjzfzshh 121 9 due due JJ cord-256201-vjzfzshh 121 10 to to IN cord-256201-vjzfzshh 121 11 a a DT cord-256201-vjzfzshh 121 12 Dam Dam NNP cord-256201-vjzfzshh 121 13 defect defect NN cord-256201-vjzfzshh 121 14 in in IN cord-256201-vjzfzshh 121 15 the the DT cord-256201-vjzfzshh 121 16 host host NN cord-256201-vjzfzshh 121 17 cell cell NN cord-256201-vjzfzshh 121 18 , , , cord-256201-vjzfzshh 121 19 since since IN cord-256201-vjzfzshh 121 20 a a DT cord-256201-vjzfzshh 121 21 standard standard JJ cord-256201-vjzfzshh 121 22 plasmid plasmid NN cord-256201-vjzfzshh 121 23 grown grow VBN cord-256201-vjzfzshh 121 24 in in IN cord-256201-vjzfzshh 121 25 the the DT cord-256201-vjzfzshh 121 26 same same JJ cord-256201-vjzfzshh 121 27 E. E. NNP cord-256201-vjzfzshh 121 28 coli coli NNS cord-256201-vjzfzshh 121 29 strain strain NN cord-256201-vjzfzshh 121 30 was be VBD cord-256201-vjzfzshh 121 31 fully fully RB cord-256201-vjzfzshh 121 32 digested digest VBN cord-256201-vjzfzshh 121 33 by by IN cord-256201-vjzfzshh 121 34 DpnI DpnI NNP cord-256201-vjzfzshh 121 35 and and CC cord-256201-vjzfzshh 121 36 fully fully RB cord-256201-vjzfzshh 121 37 resistant resistant JJ cord-256201-vjzfzshh 121 38 to to IN cord-256201-vjzfzshh 121 39 MboI MboI NNP cord-256201-vjzfzshh 121 40 ( ( -LRB- cord-256201-vjzfzshh 121 41 not not RB cord-256201-vjzfzshh 121 42 shown show VBN cord-256201-vjzfzshh 121 43 ) ) -RRB- cord-256201-vjzfzshh 121 44 . . . cord-256201-vjzfzshh 122 1 Therefore therefore RB cord-256201-vjzfzshh 122 2 , , , cord-256201-vjzfzshh 122 3 these these DT cord-256201-vjzfzshh 122 4 results result NNS cord-256201-vjzfzshh 122 5 suggest suggest VBP cord-256201-vjzfzshh 122 6 that that IN cord-256201-vjzfzshh 122 7 , , , cord-256201-vjzfzshh 122 8 as as IN cord-256201-vjzfzshh 122 9 opposed oppose VBN cord-256201-vjzfzshh 122 10 to to TO cord-256201-vjzfzshh 122 11 plasmid plasmid VB cord-256201-vjzfzshh 122 12 or or CC cord-256201-vjzfzshh 122 13 chromosomal chromosomal JJ cord-256201-vjzfzshh 122 14 DNA dna NN cord-256201-vjzfzshh 122 15 , , , cord-256201-vjzfzshh 122 16 GATC GATC NNP cord-256201-vjzfzshh 122 17 - - HYPH cord-256201-vjzfzshh 122 18 mediated mediate VBN cord-256201-vjzfzshh 122 19 MMR MMR NNP cord-256201-vjzfzshh 122 20 is be VBZ cord-256201-vjzfzshh 122 21 not not RB cord-256201-vjzfzshh 122 22 fully fully RB cord-256201-vjzfzshh 122 23 efficient efficient JJ cord-256201-vjzfzshh 122 24 in in IN cord-256201-vjzfzshh 122 25 /X174 /X174 . cord-256201-vjzfzshh 122 26 because because IN cord-256201-vjzfzshh 122 27 the the DT cord-256201-vjzfzshh 122 28 phage phage NN cord-256201-vjzfzshh 122 29 DNA dna NN cord-256201-vjzfzshh 122 30 is be VBZ cord-256201-vjzfzshh 122 31 under under RB cord-256201-vjzfzshh 122 32 - - HYPH cord-256201-vjzfzshh 122 33 methylated methylated JJ cord-256201-vjzfzshh 122 34 . . . cord-256201-vjzfzshh 123 1 Given give VBN cord-256201-vjzfzshh 123 2 that that IN cord-256201-vjzfzshh 123 3 protein protein NN cord-256201-vjzfzshh 123 4 - - HYPH cord-256201-vjzfzshh 123 5 coding code VBG cord-256201-vjzfzshh 123 6 regions region NNS cord-256201-vjzfzshh 123 7 represent represent VBP cord-256201-vjzfzshh 123 8 approximately approximately RB cord-256201-vjzfzshh 123 9 95 95 CD cord-256201-vjzfzshh 123 10 per per IN cord-256201-vjzfzshh 123 11 cent cent NN cord-256201-vjzfzshh 123 12 of of IN cord-256201-vjzfzshh 123 13 the the DT cord-256201-vjzfzshh 123 14 /X174 /X174 NFP cord-256201-vjzfzshh 123 15 genome genome NN cord-256201-vjzfzshh 123 16 , , , cord-256201-vjzfzshh 123 17 by by IN cord-256201-vjzfzshh 123 18 chance chance NN cord-256201-vjzfzshh 123 19 one one CD cord-256201-vjzfzshh 123 20 in in IN cord-256201-vjzfzshh 123 21 twenty twenty CD cord-256201-vjzfzshh 123 22 20 20 CD cord-256201-vjzfzshh 123 23 Figure figure NN cord-256201-vjzfzshh 123 24 1 1 CD cord-256201-vjzfzshh 123 25 . . . cord-256201-vjzfzshh 124 1 /X174 /X174 . cord-256201-vjzfzshh 125 1 genetic genetic JJ cord-256201-vjzfzshh 125 2 map map NN cord-256201-vjzfzshh 125 3 and and CC cord-256201-vjzfzshh 125 4 location location NN cord-256201-vjzfzshh 125 5 of of IN cord-256201-vjzfzshh 125 6 the the DT cord-256201-vjzfzshh 125 7 GATC GATC NNP cord-256201-vjzfzshh 125 8 sequence sequence NN cord-256201-vjzfzshh 125 9 motifs motif NNS cord-256201-vjzfzshh 125 10 introduced introduce VBN cord-256201-vjzfzshh 125 11 in in IN cord-256201-vjzfzshh 125 12 this this DT cord-256201-vjzfzshh 125 13 study study NN cord-256201-vjzfzshh 125 14 . . . cord-256201-vjzfzshh 126 1 Open open JJ cord-256201-vjzfzshh 126 2 reading reading NN cord-256201-vjzfzshh 126 3 frames frame NNS cord-256201-vjzfzshh 126 4 are be VBP cord-256201-vjzfzshh 126 5 represented represent VBN cord-256201-vjzfzshh 126 6 by by IN cord-256201-vjzfzshh 126 7 rectangles rectangle NNS cord-256201-vjzfzshh 126 8 ( ( -LRB- cord-256201-vjzfzshh 126 9 B b NN cord-256201-vjzfzshh 126 10 , , , cord-256201-vjzfzshh 126 11 K K NNP cord-256201-vjzfzshh 126 12 , , , cord-256201-vjzfzshh 126 13 and and CC cord-256201-vjzfzshh 126 14 E E NNS cord-256201-vjzfzshh 126 15 are be VBP cord-256201-vjzfzshh 126 16 in in IN cord-256201-vjzfzshh 126 17 different different JJ cord-256201-vjzfzshh 126 18 reading reading NN cord-256201-vjzfzshh 126 19 frames frame NNS cord-256201-vjzfzshh 126 20 ) ) -RRB- cord-256201-vjzfzshh 126 21 , , , cord-256201-vjzfzshh 126 22 and and CC cord-256201-vjzfzshh 126 23 gray gray JJ cord-256201-vjzfzshh 126 24 bars bar NNS cord-256201-vjzfzshh 126 25 indicate indicate VBP cord-256201-vjzfzshh 126 26 intergenic intergenic JJ cord-256201-vjzfzshh 126 27 regions region NNS cord-256201-vjzfzshh 126 28 . . . cord-256201-vjzfzshh 127 1 Each each DT cord-256201-vjzfzshh 127 2 GATC GATC NNP cord-256201-vjzfzshh 127 3 is be VBZ cord-256201-vjzfzshh 127 4 represented represent VBN cord-256201-vjzfzshh 127 5 by by IN cord-256201-vjzfzshh 127 6 a a DT cord-256201-vjzfzshh 127 7 dot dot NN cord-256201-vjzfzshh 127 8 , , , cord-256201-vjzfzshh 127 9 and and CC cord-256201-vjzfzshh 127 10 its -PRON- PRP$ cord-256201-vjzfzshh 127 11 position position NN cord-256201-vjzfzshh 127 12 is be VBZ cord-256201-vjzfzshh 127 13 indicated indicate VBN cord-256201-vjzfzshh 127 14 on on IN cord-256201-vjzfzshh 127 15 top top NN cord-256201-vjzfzshh 127 16 . . . cord-256201-vjzfzshh 128 1 GATC GATC NNP cord-256201-vjzfzshh 128 2 motifs motif NNS cord-256201-vjzfzshh 128 3 that that WDT cord-256201-vjzfzshh 128 4 were be VBD cord-256201-vjzfzshh 128 5 synonymous synonymous JJ cord-256201-vjzfzshh 128 6 in in IN cord-256201-vjzfzshh 128 7 all all DT cord-256201-vjzfzshh 128 8 reading reading NN cord-256201-vjzfzshh 128 9 frames frame NNS cord-256201-vjzfzshh 128 10 are be VBP cord-256201-vjzfzshh 128 11 indicated indicate VBN cord-256201-vjzfzshh 128 12 in in IN cord-256201-vjzfzshh 128 13 blue blue JJ cord-256201-vjzfzshh 128 14 , , , cord-256201-vjzfzshh 128 15 whereas whereas IN cord-256201-vjzfzshh 128 16 those those DT cord-256201-vjzfzshh 128 17 producing produce VBG cord-256201-vjzfzshh 128 18 amino amino NN cord-256201-vjzfzshh 128 19 acid acid NN cord-256201-vjzfzshh 128 20 replacements replacement NNS cord-256201-vjzfzshh 128 21 in in IN cord-256201-vjzfzshh 128 22 at at RB cord-256201-vjzfzshh 128 23 least least RBS cord-256201-vjzfzshh 128 24 one one CD cord-256201-vjzfzshh 128 25 frame frame NN cord-256201-vjzfzshh 128 26 are be VBP cord-256201-vjzfzshh 128 27 shown show VBN cord-256201-vjzfzshh 128 28 in in IN cord-256201-vjzfzshh 128 29 green green JJ cord-256201-vjzfzshh 129 1 ( ( -LRB- cord-256201-vjzfzshh 129 2 A74C A74C NNP cord-256201-vjzfzshh 129 3 produces produce VBZ cord-256201-vjzfzshh 129 4 a a DT cord-256201-vjzfzshh 129 5 K494Q K494Q NNP cord-256201-vjzfzshh 129 6 replacement replacement NN cord-256201-vjzfzshh 129 7 in in IN cord-256201-vjzfzshh 129 8 gene gene NN cord-256201-vjzfzshh 129 9 A A NNP cord-256201-vjzfzshh 129 10 and and CC cord-256201-vjzfzshh 129 11 is be VBZ cord-256201-vjzfzshh 129 12 synonymous synonymous JJ cord-256201-vjzfzshh 129 13 in in IN cord-256201-vjzfzshh 129 14 gene gene NN cord-256201-vjzfzshh 129 15 K k NN cord-256201-vjzfzshh 129 16 ; ; : cord-256201-vjzfzshh 129 17 T5374 T5374 NNP cord-256201-vjzfzshh 129 18 G G NNP cord-256201-vjzfzshh 129 19 produces produce VBZ cord-256201-vjzfzshh 129 20 a a DT cord-256201-vjzfzshh 129 21 V465 v465 JJ cord-256201-vjzfzshh 129 22 G g NN cord-256201-vjzfzshh 129 23 replacement replacement NN cord-256201-vjzfzshh 129 24 in in IN cord-256201-vjzfzshh 129 25 gene gene NN cord-256201-vjzfzshh 129 26 A A NNP cord-256201-vjzfzshh 129 27 and and CC cord-256201-vjzfzshh 129 28 is be VBZ cord-256201-vjzfzshh 129 29 synonymous synonymous JJ cord-256201-vjzfzshh 129 30 in in IN cord-256201-vjzfzshh 129 31 gene gene NN cord-256201-vjzfzshh 129 32 B b NN cord-256201-vjzfzshh 129 33 ) ) -RRB- cord-256201-vjzfzshh 129 34 . . . cord-256201-vjzfzshh 130 1 Mutations mutation NNS cord-256201-vjzfzshh 130 2 falling fall VBG cord-256201-vjzfzshh 130 3 at at IN cord-256201-vjzfzshh 130 4 intergenic intergenic JJ cord-256201-vjzfzshh 130 5 regions region NNS cord-256201-vjzfzshh 130 6 are be VBP cord-256201-vjzfzshh 130 7 shown show VBN cord-256201-vjzfzshh 130 8 in in IN cord-256201-vjzfzshh 130 9 red red NN cord-256201-vjzfzshh 130 10 . . . cord-256201-vjzfzshh 131 1 The the DT cord-256201-vjzfzshh 131 2 phage phage NN cord-256201-vjzfzshh 131 3 has have VBZ cord-256201-vjzfzshh 131 4 circular circular JJ cord-256201-vjzfzshh 131 5 DNA dna NN cord-256201-vjzfzshh 131 6 but but CC cord-256201-vjzfzshh 131 7 is be VBZ cord-256201-vjzfzshh 131 8 represented represent VBN cord-256201-vjzfzshh 131 9 linearly linearly RB cord-256201-vjzfzshh 131 10 for for IN cord-256201-vjzfzshh 131 11 convenience convenience NN cord-256201-vjzfzshh 131 12 , , , cord-256201-vjzfzshh 131 13 where where WRB cord-256201-vjzfzshh 131 14 by by IN cord-256201-vjzfzshh 131 15 convention convention NN cord-256201-vjzfzshh 131 16 the the DT cord-256201-vjzfzshh 131 17 first first JJ cord-256201-vjzfzshh 131 18 position position NN cord-256201-vjzfzshh 131 19 corresponds correspond VBZ cord-256201-vjzfzshh 131 20 to to IN cord-256201-vjzfzshh 131 21 the the DT cord-256201-vjzfzshh 131 22 last last JJ cord-256201-vjzfzshh 131 23 nucleotide nucleotide NN cord-256201-vjzfzshh 131 24 of of IN cord-256201-vjzfzshh 131 25 the the DT cord-256201-vjzfzshh 131 26 unique unique JJ cord-256201-vjzfzshh 131 27 PstI PstI NNP cord-256201-vjzfzshh 131 28 site site NN cord-256201-vjzfzshh 131 29 . . . cord-256201-vjzfzshh 131 30 _SP cord-256201-vjzfzshh 132 1 where where WRB cord-256201-vjzfzshh 132 2 T T NNP cord-256201-vjzfzshh 132 3 ¼ ¼ NNP cord-256201-vjzfzshh 132 4 7 7 CD cord-256201-vjzfzshh 132 5 is be VBZ cord-256201-vjzfzshh 132 6 the the DT cord-256201-vjzfzshh 132 7 number number NN cord-256201-vjzfzshh 132 8 of of IN cord-256201-vjzfzshh 132 9 substitutions substitution NNS cord-256201-vjzfzshh 132 10 leading lead VBG cord-256201-vjzfzshh 132 11 to to IN cord-256201-vjzfzshh 132 12 gro87 gro87 CD cord-256201-vjzfzshh 132 13 resistance resistance NN cord-256201-vjzfzshh 132 14 . . . cord-256201-vjzfzshh 133 1 g g NNP cord-256201-vjzfzshh 133 2 r r NN cord-256201-vjzfzshh 133 3 ¼ ¼ NNP cord-256201-vjzfzshh 134 1 lnðN1 lnðN1 . cord-256201-vjzfzshh 135 1 = = NFP cord-256201-vjzfzshh 136 1 N0Þ n0þ JJ cord-256201-vjzfzshh 137 1 = = SYM cord-256201-vjzfzshh 137 2 t t NNP cord-256201-vjzfzshh 137 3 , , , cord-256201-vjzfzshh 137 4 where where WRB cord-256201-vjzfzshh 137 5 t t NNP cord-256201-vjzfzshh 137 6 is be VBZ cord-256201-vjzfzshh 137 7 the the DT cord-256201-vjzfzshh 137 8 incubation incubation NN cord-256201-vjzfzshh 137 9 time time NN cord-256201-vjzfzshh 137 10 in in IN cord-256201-vjzfzshh 137 11 hours hour NNS cord-256201-vjzfzshh 137 12 . . . cord-256201-vjzfzshh 138 1 Table table NN cord-256201-vjzfzshh 138 2 1 1 CD cord-256201-vjzfzshh 138 3 for for IN cord-256201-vjzfzshh 138 4 details detail NNS cord-256201-vjzfzshh 138 5 . . . cord-256201-vjzfzshh 139 1 GATC GATC NNP cord-256201-vjzfzshh 139 2 sites site NNS cord-256201-vjzfzshh 139 3 should should MD cord-256201-vjzfzshh 139 4 fall fall VB cord-256201-vjzfzshh 139 5 at at IN cord-256201-vjzfzshh 139 6 intergenic intergenic JJ cord-256201-vjzfzshh 139 7 regions region NNS cord-256201-vjzfzshh 139 8 . . . cord-256201-vjzfzshh 140 1 To to TO cord-256201-vjzfzshh 140 2 test test VB cord-256201-vjzfzshh 140 3 how how WRB cord-256201-vjzfzshh 140 4 GATC GATC NNP cord-256201-vjzfzshh 140 5 location location NN cord-256201-vjzfzshh 140 6 may may MD cord-256201-vjzfzshh 140 7 influence influence VB cord-256201-vjzfzshh 140 8 MMR MMR NNP cord-256201-vjzfzshh 140 9 and and CC cord-256201-vjzfzshh 140 10 the the DT cord-256201-vjzfzshh 140 11 phage phage NN cord-256201-vjzfzshh 140 12 mutation mutation NN cord-256201-vjzfzshh 140 13 rate rate NN cord-256201-vjzfzshh 140 14 , , , cord-256201-vjzfzshh 140 15 we -PRON- PRP cord-256201-vjzfzshh 140 16 created create VBD cord-256201-vjzfzshh 140 17 another another DT cord-256201-vjzfzshh 140 18 mutant mutant NN cord-256201-vjzfzshh 140 19 ( ( -LRB- cord-256201-vjzfzshh 140 20 4iGATC 4igatc CD cord-256201-vjzfzshh 140 21 ) ) -RRB- cord-256201-vjzfzshh 140 22 in in IN cord-256201-vjzfzshh 140 23 which which WDT cord-256201-vjzfzshh 140 24 one one CD cord-256201-vjzfzshh 140 25 of of IN cord-256201-vjzfzshh 140 26 the the DT cord-256201-vjzfzshh 140 27 four four CD cord-256201-vjzfzshh 140 28 synonymous synonymous JJ cord-256201-vjzfzshh 140 29 substitutions substitution NNS cord-256201-vjzfzshh 140 30 of of IN cord-256201-vjzfzshh 140 31 the the DT cord-256201-vjzfzshh 140 32 above above JJ cord-256201-vjzfzshh 140 33 4GATC 4gatc CD cord-256201-vjzfzshh 140 34 virus virus NN cord-256201-vjzfzshh 140 35 was be VBD cord-256201-vjzfzshh 140 36 replaced replace VBN cord-256201-vjzfzshh 140 37 by by IN cord-256201-vjzfzshh 140 38 substitution substitution NN cord-256201-vjzfzshh 140 39 A3963 A3963 NNP cord-256201-vjzfzshh 140 40 G g NN cord-256201-vjzfzshh 140 41 , , , cord-256201-vjzfzshh 140 42 which which WDT cord-256201-vjzfzshh 140 43 was be VBD cord-256201-vjzfzshh 140 44 located locate VBN cord-256201-vjzfzshh 140 45 in in IN cord-256201-vjzfzshh 140 46 the the DT cord-256201-vjzfzshh 140 47 spacer spacer NN cord-256201-vjzfzshh 140 48 region region NN cord-256201-vjzfzshh 140 49 between between IN cord-256201-vjzfzshh 140 50 genes gene NNS cord-256201-vjzfzshh 140 51 H H NNP cord-256201-vjzfzshh 140 52 and and CC cord-256201-vjzfzshh 140 53 A. a. NN cord-256201-vjzfzshh 141 1 The the DT cord-256201-vjzfzshh 141 2 mutation mutation NN cord-256201-vjzfzshh 141 3 rate rate NN cord-256201-vjzfzshh 141 4 of of IN cord-256201-vjzfzshh 141 5 the the DT cord-256201-vjzfzshh 141 6 4iGATC 4igatc CD cord-256201-vjzfzshh 141 7 was be VBD cord-256201-vjzfzshh 141 8 ( ( -LRB- cord-256201-vjzfzshh 141 9 2.27 2.27 CD cord-256201-vjzfzshh 141 10 6 6 CD cord-256201-vjzfzshh 141 11 1.04 1.04 CD cord-256201-vjzfzshh 141 12 ) ) -RRB- cord-256201-vjzfzshh 142 1 Â â NN cord-256201-vjzfzshh 143 1 10 10 CD cord-256201-vjzfzshh 143 2 -8 -8 NNPS cord-256201-vjzfzshh 143 3 m m NNP cord-256201-vjzfzshh 143 4 / / SYM cord-256201-vjzfzshh 143 5 n n NNP cord-256201-vjzfzshh 143 6 / / SYM cord-256201-vjzfzshh 143 7 r r NNP cord-256201-vjzfzshh 143 8 , , , cord-256201-vjzfzshh 143 9 which which WDT cord-256201-vjzfzshh 143 10 represents represent VBZ cord-256201-vjzfzshh 143 11 a a DT cord-256201-vjzfzshh 143 12 fiftyfold fiftyfold JJ cord-256201-vjzfzshh 143 13 reduction reduction NN cord-256201-vjzfzshh 143 14 compared compare VBN cord-256201-vjzfzshh 143 15 with with IN cord-256201-vjzfzshh 143 16 the the DT cord-256201-vjzfzshh 143 17 WT WT NNP cord-256201-vjzfzshh 143 18 ( ( -LRB- cord-256201-vjzfzshh 143 19 t t NN cord-256201-vjzfzshh 143 20 - - HYPH cord-256201-vjzfzshh 143 21 test test NN cord-256201-vjzfzshh 143 22 : : : cord-256201-vjzfzshh 144 1 P p NN cord-256201-vjzfzshh 144 2 < < XX cord-256201-vjzfzshh 144 3 0.001 0.001 CD cord-256201-vjzfzshh 144 4 ; ; : cord-256201-vjzfzshh 144 5 Table table NN cord-256201-vjzfzshh 144 6 1 1 CD cord-256201-vjzfzshh 144 7 ) ) -RRB- cord-256201-vjzfzshh 144 8 . . . cord-256201-vjzfzshh 145 1 Therefore therefore RB cord-256201-vjzfzshh 145 2 , , , cord-256201-vjzfzshh 145 3 addition addition NN cord-256201-vjzfzshh 145 4 of of IN cord-256201-vjzfzshh 145 5 this this DT cord-256201-vjzfzshh 145 6 single single JJ cord-256201-vjzfzshh 145 7 intergenic intergenic JJ cord-256201-vjzfzshh 145 8 substitution substitution NN cord-256201-vjzfzshh 145 9 had have VBD cord-256201-vjzfzshh 145 10 a a DT cord-256201-vjzfzshh 145 11 dramatic dramatic JJ cord-256201-vjzfzshh 145 12 effect effect NN cord-256201-vjzfzshh 145 13 on on IN cord-256201-vjzfzshh 145 14 the the DT cord-256201-vjzfzshh 145 15 viral viral JJ cord-256201-vjzfzshh 145 16 mutation mutation NN cord-256201-vjzfzshh 145 17 rate rate NN cord-256201-vjzfzshh 145 18 , , , cord-256201-vjzfzshh 145 19 compared compare VBN cord-256201-vjzfzshh 145 20 with with IN cord-256201-vjzfzshh 145 21 the the DT cord-256201-vjzfzshh 145 22 4GATC 4gatc CD cord-256201-vjzfzshh 145 23 virus virus NN cord-256201-vjzfzshh 145 24 . . . cord-256201-vjzfzshh 146 1 To to TO cord-256201-vjzfzshh 146 2 further further RB cord-256201-vjzfzshh 146 3 test test VB cord-256201-vjzfzshh 146 4 the the DT cord-256201-vjzfzshh 146 5 effect effect NN cord-256201-vjzfzshh 146 6 of of IN cord-256201-vjzfzshh 146 7 intergenic intergenic JJ cord-256201-vjzfzshh 146 8 GATCs GATCs NNP cord-256201-vjzfzshh 146 9 on on IN cord-256201-vjzfzshh 146 10 MMR MMR NNP cord-256201-vjzfzshh 146 11 , , , cord-256201-vjzfzshh 146 12 we -PRON- PRP cord-256201-vjzfzshh 146 13 first first RB cord-256201-vjzfzshh 146 14 created create VBD cord-256201-vjzfzshh 146 15 the the DT cord-256201-vjzfzshh 146 16 single single JJ cord-256201-vjzfzshh 146 17 mutant mutant JJ cord-256201-vjzfzshh 146 18 A3963 A3963 NNP cord-256201-vjzfzshh 146 19 G g NN cord-256201-vjzfzshh 146 20 , , , cord-256201-vjzfzshh 146 21 which which WDT cord-256201-vjzfzshh 146 22 showed show VBD cord-256201-vjzfzshh 146 23 a a DT cord-256201-vjzfzshh 146 24 mutation mutation NN cord-256201-vjzfzshh 146 25 rate rate NN cord-256201-vjzfzshh 146 26 five five CD cord-256201-vjzfzshh 146 27 times time NNS cord-256201-vjzfzshh 146 28 lower low JJR cord-256201-vjzfzshh 146 29 than than IN cord-256201-vjzfzshh 146 30 the the DT cord-256201-vjzfzshh 146 31 WT WT NNP cord-256201-vjzfzshh 146 32 ( ( -LRB- cord-256201-vjzfzshh 146 33 t t NN cord-256201-vjzfzshh 146 34 - - HYPH cord-256201-vjzfzshh 146 35 test test NN cord-256201-vjzfzshh 146 36 : : : cord-256201-vjzfzshh 146 37 P p NN cord-256201-vjzfzshh 146 38 < < XX cord-256201-vjzfzshh 146 39 0.001 0.001 CD cord-256201-vjzfzshh 146 40 ; ; : cord-256201-vjzfzshh 146 41 Table table NN cord-256201-vjzfzshh 146 42 1 1 CD cord-256201-vjzfzshh 146 43 ) ) -RRB- cord-256201-vjzfzshh 146 44 . . . cord-256201-vjzfzshh 147 1 This this DT cord-256201-vjzfzshh 147 2 rate rate NN cord-256201-vjzfzshh 147 3 was be VBD cord-256201-vjzfzshh 147 4 significantly significantly RB cord-256201-vjzfzshh 147 5 higher high JJR cord-256201-vjzfzshh 147 6 than than IN cord-256201-vjzfzshh 147 7 for for IN cord-256201-vjzfzshh 147 8 the the DT cord-256201-vjzfzshh 147 9 4iGATC 4igatc CD cord-256201-vjzfzshh 147 10 virus virus NN cord-256201-vjzfzshh 147 11 ( ( -LRB- cord-256201-vjzfzshh 147 12 t t NN cord-256201-vjzfzshh 147 13 - - HYPH cord-256201-vjzfzshh 147 14 test test NN cord-256201-vjzfzshh 147 15 : : : cord-256201-vjzfzshh 147 16 P p NN cord-256201-vjzfzshh 147 17 ¼ ¼ CD cord-256201-vjzfzshh 147 18 0.020 0.020 CD cord-256201-vjzfzshh 147 19 ) ) -RRB- cord-256201-vjzfzshh 147 20 , , , cord-256201-vjzfzshh 147 21 showing show VBG cord-256201-vjzfzshh 147 22 that that IN cord-256201-vjzfzshh 147 23 the the DT cord-256201-vjzfzshh 147 24 effect effect NN cord-256201-vjzfzshh 147 25 of of IN cord-256201-vjzfzshh 147 26 the the DT cord-256201-vjzfzshh 147 27 A3963 A3963 NNP cord-256201-vjzfzshh 147 28 G g NN cord-256201-vjzfzshh 147 29 substitution substitution NN cord-256201-vjzfzshh 147 30 was be VBD cord-256201-vjzfzshh 147 31 enhanced enhance VBN cord-256201-vjzfzshh 147 32 by by IN cord-256201-vjzfzshh 147 33 the the DT cord-256201-vjzfzshh 147 34 presence presence NN cord-256201-vjzfzshh 147 35 of of IN cord-256201-vjzfzshh 147 36 other other JJ cord-256201-vjzfzshh 147 37 , , , cord-256201-vjzfzshh 147 38 neighboring neighbor VBG cord-256201-vjzfzshh 147 39 GATC GATC NNP cord-256201-vjzfzshh 147 40 sites site NNS cord-256201-vjzfzshh 147 41 , , , cord-256201-vjzfzshh 147 42 consistent consistent JJ cord-256201-vjzfzshh 147 43 with with IN cord-256201-vjzfzshh 147 44 the the DT cord-256201-vjzfzshh 147 45 lack lack NN cord-256201-vjzfzshh 147 46 of of IN cord-256201-vjzfzshh 147 47 full full JJ cord-256201-vjzfzshh 147 48 methylation methylation NN cord-256201-vjzfzshh 147 49 shown show VBN cord-256201-vjzfzshh 147 50 above above RB cord-256201-vjzfzshh 147 51 . . . cord-256201-vjzfzshh 148 1 Then then RB cord-256201-vjzfzshh 148 2 , , , cord-256201-vjzfzshh 148 3 we -PRON- PRP cord-256201-vjzfzshh 148 4 constructed construct VBD cord-256201-vjzfzshh 148 5 two two CD cord-256201-vjzfzshh 148 6 additional additional JJ cord-256201-vjzfzshh 148 7 intergenic intergenic JJ cord-256201-vjzfzshh 148 8 single single JJ cord-256201-vjzfzshh 148 9 - - HYPH cord-256201-vjzfzshh 148 10 GATC gatc NN cord-256201-vjzfzshh 148 11 viruses virus NNS cord-256201-vjzfzshh 148 12 located locate VBN cord-256201-vjzfzshh 148 13 in in IN cord-256201-vjzfzshh 148 14 the the DT cord-256201-vjzfzshh 148 15 region region NN cord-256201-vjzfzshh 148 16 between between IN cord-256201-vjzfzshh 148 17 the the DT cord-256201-vjzfzshh 148 18 H H NNP cord-256201-vjzfzshh 148 19 and and CC cord-256201-vjzfzshh 148 20 A a DT cord-256201-vjzfzshh 148 21 genes gene NNS cord-256201-vjzfzshh 148 22 by by IN cord-256201-vjzfzshh 148 23 introducing introduce VBG cord-256201-vjzfzshh 148 24 the the DT cord-256201-vjzfzshh 148 25 appropriate appropriate JJ cord-256201-vjzfzshh 148 26 nucleotide nucleotide JJ cord-256201-vjzfzshh 148 27 substitutions substitution NNS cord-256201-vjzfzshh 148 28 ( ( -LRB- cord-256201-vjzfzshh 148 29 Fig Fig NNP cord-256201-vjzfzshh 148 30 . . NNP cord-256201-vjzfzshh 148 31 1 1 CD cord-256201-vjzfzshh 148 32 ) ) -RRB- cord-256201-vjzfzshh 148 33 . . . cord-256201-vjzfzshh 149 1 The the DT cord-256201-vjzfzshh 149 2 mutation mutation NN cord-256201-vjzfzshh 149 3 rate rate NN cord-256201-vjzfzshh 149 4 of of IN cord-256201-vjzfzshh 149 5 the the DT cord-256201-vjzfzshh 149 6 virus virus NN cord-256201-vjzfzshh 149 7 carrying carry VBG cord-256201-vjzfzshh 149 8 the the DT cord-256201-vjzfzshh 149 9 C3934G c3934g CD cord-256201-vjzfzshh 149 10 / / SYM cord-256201-vjzfzshh 149 11 C3935A C3935A NNP cord-256201-vjzfzshh 149 12 substitutions substitution NNS cord-256201-vjzfzshh 149 13 was be VBD cord-256201-vjzfzshh 149 14 fourteen fourteen CD cord-256201-vjzfzshh 149 15 times time NNS cord-256201-vjzfzshh 149 16 lower low JJR cord-256201-vjzfzshh 149 17 than than IN cord-256201-vjzfzshh 149 18 the the DT cord-256201-vjzfzshh 149 19 WT WT NNP cord-256201-vjzfzshh 149 20 ( ( -LRB- cord-256201-vjzfzshh 149 21 t t NN cord-256201-vjzfzshh 149 22 - - HYPH cord-256201-vjzfzshh 149 23 test test NN cord-256201-vjzfzshh 149 24 : : : cord-256201-vjzfzshh 149 25 P p NN cord-256201-vjzfzshh 149 26 < < XX cord-256201-vjzfzshh 149 27 0.001 0.001 CD cord-256201-vjzfzshh 149 28 ; ; : cord-256201-vjzfzshh 149 29 Table table NN cord-256201-vjzfzshh 149 30 1 1 CD cord-256201-vjzfzshh 149 31 ) ) -RRB- cord-256201-vjzfzshh 149 32 , , , cord-256201-vjzfzshh 149 33 whereas whereas IN cord-256201-vjzfzshh 149 34 substitutions substitution NNS cord-256201-vjzfzshh 149 35 A3940G A3940G NNP cord-256201-vjzfzshh 149 36 / / SYM cord-256201-vjzfzshh 149 37 T3943C T3943C NNP cord-256201-vjzfzshh 149 38 were be VBD cord-256201-vjzfzshh 149 39 unable unable JJ cord-256201-vjzfzshh 149 40 to to TO cord-256201-vjzfzshh 149 41 reduce reduce VB cord-256201-vjzfzshh 149 42 the the DT cord-256201-vjzfzshh 149 43 mutation mutation NN cord-256201-vjzfzshh 149 44 rate rate NN cord-256201-vjzfzshh 149 45 below below IN cord-256201-vjzfzshh 149 46 the the DT cord-256201-vjzfzshh 149 47 WT WT NNP cord-256201-vjzfzshh 149 48 level level NN cord-256201-vjzfzshh 149 49 ( ( -LRB- cord-256201-vjzfzshh 149 50 P p NN cord-256201-vjzfzshh 149 51 ¼ ¼ CD cord-256201-vjzfzshh 149 52 0.132 0.132 CD cord-256201-vjzfzshh 149 53 ) ) -RRB- cord-256201-vjzfzshh 149 54 despite despite IN cord-256201-vjzfzshh 149 55 being be VBG cord-256201-vjzfzshh 149 56 located locate VBN cord-256201-vjzfzshh 149 57 only only RB cord-256201-vjzfzshh 149 58 five five CD cord-256201-vjzfzshh 149 59 bases basis NNS cord-256201-vjzfzshh 149 60 away away RB cord-256201-vjzfzshh 149 61 from from IN cord-256201-vjzfzshh 149 62 the the DT cord-256201-vjzfzshh 149 63 previous previous JJ cord-256201-vjzfzshh 149 64 substitutions substitution NNS cord-256201-vjzfzshh 149 65 . . . cord-256201-vjzfzshh 150 1 Therefore therefore RB cord-256201-vjzfzshh 150 2 , , , cord-256201-vjzfzshh 150 3 some some DT cord-256201-vjzfzshh 150 4 but but CC cord-256201-vjzfzshh 150 5 not not RB cord-256201-vjzfzshh 150 6 all all DT cord-256201-vjzfzshh 150 7 intergenic intergenic JJ cord-256201-vjzfzshh 150 8 GATCs GATCs NNPS cord-256201-vjzfzshh 150 9 are be VBP cord-256201-vjzfzshh 150 10 able able JJ cord-256201-vjzfzshh 150 11 to to TO cord-256201-vjzfzshh 150 12 promote promote VB cord-256201-vjzfzshh 150 13 MMR MMR NNP cord-256201-vjzfzshh 150 14 , , , cord-256201-vjzfzshh 150 15 and and CC cord-256201-vjzfzshh 150 16 minute minute NN cord-256201-vjzfzshh 150 17 changes change NNS cord-256201-vjzfzshh 150 18 in in IN cord-256201-vjzfzshh 150 19 their -PRON- PRP$ cord-256201-vjzfzshh 150 20 genome genome NN cord-256201-vjzfzshh 150 21 location location NN cord-256201-vjzfzshh 150 22 lead lead NN cord-256201-vjzfzshh 150 23 to to IN cord-256201-vjzfzshh 150 24 marked marked JJ cord-256201-vjzfzshh 150 25 differences difference NNS cord-256201-vjzfzshh 150 26 in in IN cord-256201-vjzfzshh 150 27 mutation mutation NN cord-256201-vjzfzshh 150 28 rate rate NN cord-256201-vjzfzshh 150 29 . . . cord-256201-vjzfzshh 151 1 Induction induction NN cord-256201-vjzfzshh 151 2 of of IN cord-256201-vjzfzshh 151 3 the the DT cord-256201-vjzfzshh 151 4 chaperone chaperone NN cord-256201-vjzfzshh 151 5 - - HYPH cord-256201-vjzfzshh 151 6 encoding encode VBG cord-256201-vjzfzshh 151 7 groE groe CD cord-256201-vjzfzshh 151 8 operon operon NN cord-256201-vjzfzshh 151 9 in in IN cord-256201-vjzfzshh 151 10 response response NN cord-256201-vjzfzshh 151 11 to to TO cord-256201-vjzfzshh 151 12 heat heat VB cord-256201-vjzfzshh 151 13 shocks shock NNS cord-256201-vjzfzshh 151 14 up up RP cord-256201-vjzfzshh 151 15 - - HYPH cord-256201-vjzfzshh 151 16 regulates regulate VBZ cord-256201-vjzfzshh 151 17 the the DT cord-256201-vjzfzshh 151 18 expression expression NN cord-256201-vjzfzshh 151 19 of of IN cord-256201-vjzfzshh 151 20 the the DT cord-256201-vjzfzshh 151 21 error error NN cord-256201-vjzfzshh 151 22 - - HYPH cord-256201-vjzfzshh 151 23 prone prone JJ cord-256201-vjzfzshh 151 24 DNA dna NN cord-256201-vjzfzshh 151 25 polymerase polymerase NN cord-256201-vjzfzshh 151 26 IV IV NNP cord-256201-vjzfzshh 151 27 , , , cord-256201-vjzfzshh 151 28 which which WDT cord-256201-vjzfzshh 151 29 participates participate VBZ cord-256201-vjzfzshh 151 30 in in IN cord-256201-vjzfzshh 151 31 the the DT cord-256201-vjzfzshh 151 32 repair repair NN cord-256201-vjzfzshh 151 33 of of IN cord-256201-vjzfzshh 151 34 dsDNA dsdna JJ cord-256201-vjzfzshh 151 35 breaks break NNS cord-256201-vjzfzshh 151 36 under under IN cord-256201-vjzfzshh 151 37 different different JJ cord-256201-vjzfzshh 151 38 types type NNS cord-256201-vjzfzshh 151 39 of of IN cord-256201-vjzfzshh 151 40 cellular cellular JJ cord-256201-vjzfzshh 151 41 stress stress NN cord-256201-vjzfzshh 151 42 , , , cord-256201-vjzfzshh 151 43 leading lead VBG cord-256201-vjzfzshh 151 44 to to IN cord-256201-vjzfzshh 151 45 stress stress NN cord-256201-vjzfzshh 151 46 - - HYPH cord-256201-vjzfzshh 151 47 induced induce VBN cord-256201-vjzfzshh 151 48 mutagenesis mutagenesis NN cord-256201-vjzfzshh 151 49 ( ( -LRB- cord-256201-vjzfzshh 151 50 Layton Layton NNP cord-256201-vjzfzshh 151 51 and and CC cord-256201-vjzfzshh 151 52 Foster Foster NNP cord-256201-vjzfzshh 151 53 2005 2005 CD cord-256201-vjzfzshh 151 54 ; ; : cord-256201-vjzfzshh 152 1 Malkova Malkova NNP cord-256201-vjzfzshh 152 2 and and CC cord-256201-vjzfzshh 152 3 Haber Haber NNP cord-256201-vjzfzshh 152 4 2012 2012 CD cord-256201-vjzfzshh 152 5 ) ) -RRB- cord-256201-vjzfzshh 152 6 . . . cord-256201-vjzfzshh 153 1 To to TO cord-256201-vjzfzshh 153 2 address address VB cord-256201-vjzfzshh 153 3 the the DT cord-256201-vjzfzshh 153 4 effects effect NNS cord-256201-vjzfzshh 153 5 of of IN cord-256201-vjzfzshh 153 6 heat heat NN cord-256201-vjzfzshh 153 7 shocks shock NNS cord-256201-vjzfzshh 153 8 on on IN cord-256201-vjzfzshh 153 9 the the DT cord-256201-vjzfzshh 153 10 /X174 /X174 NFP cord-256201-vjzfzshh 153 11 mutation mutation NN cord-256201-vjzfzshh 153 12 rate rate NN cord-256201-vjzfzshh 153 13 , , , cord-256201-vjzfzshh 153 14 we -PRON- PRP cord-256201-vjzfzshh 153 15 performed perform VBD cord-256201-vjzfzshh 153 16 fluctuation fluctuation NN cord-256201-vjzfzshh 153 17 tests test NNS cord-256201-vjzfzshh 153 18 at at IN cord-256201-vjzfzshh 153 19 42 42 CD cord-256201-vjzfzshh 153 20 C c NN cord-256201-vjzfzshh 153 21 for for IN cord-256201-vjzfzshh 153 22 the the DT cord-256201-vjzfzshh 153 23 WT WT NNP cord-256201-vjzfzshh 153 24 and and CC cord-256201-vjzfzshh 153 25 20GATC 20gatc CD cord-256201-vjzfzshh 153 26 viruses virus NNS cord-256201-vjzfzshh 153 27 . . . cord-256201-vjzfzshh 154 1 The the DT cord-256201-vjzfzshh 154 2 mutation mutation NN cord-256201-vjzfzshh 154 3 rate rate NN cord-256201-vjzfzshh 154 4 of of IN cord-256201-vjzfzshh 154 5 the the DT cord-256201-vjzfzshh 154 6 WT WT NNP cord-256201-vjzfzshh 154 7 was be VBD cord-256201-vjzfzshh 154 8 not not RB cord-256201-vjzfzshh 154 9 significantly significantly RB cord-256201-vjzfzshh 154 10 affected affect VBN cord-256201-vjzfzshh 154 11 by by IN cord-256201-vjzfzshh 154 12 the the DT cord-256201-vjzfzshh 154 13 temperature temperature NN cord-256201-vjzfzshh 154 14 shift shift NN cord-256201-vjzfzshh 154 15 ( ( -LRB- cord-256201-vjzfzshh 154 16 t t NN cord-256201-vjzfzshh 154 17 - - HYPH cord-256201-vjzfzshh 154 18 test test NN cord-256201-vjzfzshh 154 19 : : : cord-256201-vjzfzshh 155 1 P p NN cord-256201-vjzfzshh 155 2 ¼ ¼ NNP cord-256201-vjzfzshh 155 3 0.585 0.585 CD cord-256201-vjzfzshh 155 4 ; ; : cord-256201-vjzfzshh 155 5 Table table NN cord-256201-vjzfzshh 155 6 2 2 CD cord-256201-vjzfzshh 155 7 ; ; : cord-256201-vjzfzshh 156 1 Fig Fig NNP cord-256201-vjzfzshh 156 2 . . . cord-256201-vjzfzshh 156 3 4A 4a CD cord-256201-vjzfzshh 156 4 ) ) -RRB- cord-256201-vjzfzshh 156 5 . . . cord-256201-vjzfzshh 157 1 In in IN cord-256201-vjzfzshh 157 2 contrast contrast NN cord-256201-vjzfzshh 157 3 , , , cord-256201-vjzfzshh 157 4 the the DT cord-256201-vjzfzshh 157 5 mutation mutation NN cord-256201-vjzfzshh 157 6 rate rate NN cord-256201-vjzfzshh 157 7 of of IN cord-256201-vjzfzshh 157 8 the the DT cord-256201-vjzfzshh 157 9 20GATC 20gatc CD cord-256201-vjzfzshh 157 10 virus virus NN cord-256201-vjzfzshh 157 11 was be VBD cord-256201-vjzfzshh 157 12 twenty twenty CD cord-256201-vjzfzshh 157 13 times time NNS cord-256201-vjzfzshh 157 14 higher high JJR cord-256201-vjzfzshh 157 15 at at IN cord-256201-vjzfzshh 157 16 42 42 CD cord-256201-vjzfzshh 157 17 C c NN cord-256201-vjzfzshh 157 18 than than IN cord-256201-vjzfzshh 157 19 at at IN cord-256201-vjzfzshh 157 20 37 37 CD cord-256201-vjzfzshh 157 21 C c NN cord-256201-vjzfzshh 157 22 ( ( -LRB- cord-256201-vjzfzshh 157 23 t t NN cord-256201-vjzfzshh 157 24 - - HYPH cord-256201-vjzfzshh 157 25 test test NN cord-256201-vjzfzshh 157 26 : : : cord-256201-vjzfzshh 158 1 P p NN cord-256201-vjzfzshh 158 2 < < XX cord-256201-vjzfzshh 158 3 0.001 0.001 CD cord-256201-vjzfzshh 158 4 ) ) -RRB- cord-256201-vjzfzshh 158 5 and and CC cord-256201-vjzfzshh 158 6 increased increase VBD cord-256201-vjzfzshh 158 7 even even RB cord-256201-vjzfzshh 158 8 above above IN cord-256201-vjzfzshh 158 9 the the DT cord-256201-vjzfzshh 158 10 WT WT NNP cord-256201-vjzfzshh 158 11 level level NN cord-256201-vjzfzshh 158 12 ( ( -LRB- cord-256201-vjzfzshh 158 13 P p NN cord-256201-vjzfzshh 158 14 ¼ ¼ CD cord-256201-vjzfzshh 158 15 0.003 0.003 CD cord-256201-vjzfzshh 158 16 ) ) -RRB- cord-256201-vjzfzshh 158 17 . . . cord-256201-vjzfzshh 159 1 Therefore therefore RB cord-256201-vjzfzshh 159 2 , , , cord-256201-vjzfzshh 159 3 the the DT cord-256201-vjzfzshh 159 4 effects effect NNS cord-256201-vjzfzshh 159 5 of of IN cord-256201-vjzfzshh 159 6 GATC GATC NNP cord-256201-vjzfzshh 159 7 sites site NNS cord-256201-vjzfzshh 159 8 on on IN cord-256201-vjzfzshh 159 9 the the DT cord-256201-vjzfzshh 159 10 /X174 /X174 NFP cord-256201-vjzfzshh 159 11 mutation mutation NN cord-256201-vjzfzshh 159 12 rate rate NN cord-256201-vjzfzshh 159 13 observed observe VBD cord-256201-vjzfzshh 159 14 at at IN cord-256201-vjzfzshh 159 15 37 37 CD cord-256201-vjzfzshh 159 16 C C NNP cord-256201-vjzfzshh 159 17 were be VBD cord-256201-vjzfzshh 159 18 reverted revert VBN cord-256201-vjzfzshh 159 19 at at IN cord-256201-vjzfzshh 159 20 42 42 CD cord-256201-vjzfzshh 159 21 C. C. NNP cord-256201-vjzfzshh 159 22 Heat Heat NNP cord-256201-vjzfzshh 159 23 drastically drastically RB cord-256201-vjzfzshh 159 24 reduced reduce VBD cord-256201-vjzfzshh 159 25 the the DT cord-256201-vjzfzshh 159 26 viral viral JJ cord-256201-vjzfzshh 159 27 growth growth NN cord-256201-vjzfzshh 159 28 rate rate NN cord-256201-vjzfzshh 159 29 but but CC cord-256201-vjzfzshh 159 30 , , , cord-256201-vjzfzshh 159 31 whereas whereas IN cord-256201-vjzfzshh 159 32 the the DT cord-256201-vjzfzshh 159 33 WT WT NNP cord-256201-vjzfzshh 159 34 and and CC cord-256201-vjzfzshh 159 35 20GATC 20gatc CD cord-256201-vjzfzshh 159 36 viruses virus NNS cord-256201-vjzfzshh 159 37 showed show VBD cord-256201-vjzfzshh 159 38 similar similar JJ cord-256201-vjzfzshh 159 39 growth growth NN cord-256201-vjzfzshh 159 40 rates rate NNS cord-256201-vjzfzshh 159 41 at at IN cord-256201-vjzfzshh 159 42 37 37 CD cord-256201-vjzfzshh 159 43 C c NN cord-256201-vjzfzshh 159 44 , , , cord-256201-vjzfzshh 159 45 the the DT cord-256201-vjzfzshh 159 46 20GATC 20gatc CD cord-256201-vjzfzshh 159 47 virus virus NN cord-256201-vjzfzshh 159 48 grew grow VBD cord-256201-vjzfzshh 159 49 significantly significantly RB cord-256201-vjzfzshh 159 50 slower slow JJR cord-256201-vjzfzshh 159 51 than than IN cord-256201-vjzfzshh 159 52 the the DT cord-256201-vjzfzshh 159 53 WT WT NNP cord-256201-vjzfzshh 159 54 at at IN cord-256201-vjzfzshh 159 55 42 42 CD cord-256201-vjzfzshh 159 56 C C NNP cord-256201-vjzfzshh 159 57 ( ( -LRB- cord-256201-vjzfzshh 159 58 2.23 2.23 CD cord-256201-vjzfzshh 159 59 6 6 CD cord-256201-vjzfzshh 159 60 0.19 0.19 CD cord-256201-vjzfzshh 159 61 h h NN cord-256201-vjzfzshh 159 62 -1 -1 NNP cord-256201-vjzfzshh 159 63 versus versus IN cord-256201-vjzfzshh 159 64 3.81 3.81 CD cord-256201-vjzfzshh 159 65 6 6 CD cord-256201-vjzfzshh 159 66 0.24 0.24 CD cord-256201-vjzfzshh 159 67 h h NN cord-256201-vjzfzshh 159 68 -1 -1 NN cord-256201-vjzfzshh 159 69 ; ; : cord-256201-vjzfzshh 159 70 t t NN cord-256201-vjzfzshh 159 71 - - HYPH cord-256201-vjzfzshh 159 72 test test NN cord-256201-vjzfzshh 159 73 : : : cord-256201-vjzfzshh 159 74 P p NN cord-256201-vjzfzshh 159 75 ¼ ¼ CD cord-256201-vjzfzshh 159 76 0.007 0.007 CD cord-256201-vjzfzshh 159 77 ; ; : cord-256201-vjzfzshh 159 78 Table table NN cord-256201-vjzfzshh 159 79 2 2 CD cord-256201-vjzfzshh 159 80 ; ; : cord-256201-vjzfzshh 159 81 Fig fig NN cord-256201-vjzfzshh 159 82 . . . cord-256201-vjzfzshh 159 83 4B 4b CD cord-256201-vjzfzshh 159 84 ) ) -RRB- cord-256201-vjzfzshh 159 85 , , , cord-256201-vjzfzshh 159 86 suggesting suggest VBG cord-256201-vjzfzshh 159 87 that that IN cord-256201-vjzfzshh 159 88 up up NN cord-256201-vjzfzshh 159 89 - - HYPH cord-256201-vjzfzshh 159 90 regulation regulation NN cord-256201-vjzfzshh 159 91 of of IN cord-256201-vjzfzshh 159 92 repair repair NN cord-256201-vjzfzshh 159 93 pathways pathway NNS cord-256201-vjzfzshh 159 94 under under IN cord-256201-vjzfzshh 159 95 thermal thermal JJ cord-256201-vjzfzshh 159 96 stress stress NN cord-256201-vjzfzshh 159 97 slows slow VBZ cord-256201-vjzfzshh 159 98 down down RP cord-256201-vjzfzshh 159 99 phage phage NN cord-256201-vjzfzshh 159 100 replication replication NN cord-256201-vjzfzshh 159 101 . . . cord-256201-vjzfzshh 160 1 To to TO cord-256201-vjzfzshh 160 2 evaluate evaluate VB cord-256201-vjzfzshh 160 3 the the DT cord-256201-vjzfzshh 160 4 effects effect NNS cord-256201-vjzfzshh 160 5 of of IN cord-256201-vjzfzshh 160 6 another another DT cord-256201-vjzfzshh 160 7 stressor stressor NN cord-256201-vjzfzshh 160 8 , , , cord-256201-vjzfzshh 160 9 we -PRON- PRP cord-256201-vjzfzshh 160 10 treated treat VBD cord-256201-vjzfzshh 160 11 cells cell NNS cord-256201-vjzfzshh 160 12 with with IN cord-256201-vjzfzshh 160 13 5-FU 5-fu CD cord-256201-vjzfzshh 160 14 ( ( -LRB- cord-256201-vjzfzshh 160 15 10 10 CD cord-256201-vjzfzshh 160 16 ng ng NN cord-256201-vjzfzshh 160 17 / / SYM cord-256201-vjzfzshh 160 18 ml ml NN cord-256201-vjzfzshh 160 19 ) ) -RRB- cord-256201-vjzfzshh 160 20 which which WDT cord-256201-vjzfzshh 160 21 , , , cord-256201-vjzfzshh 160 22 in in IN cord-256201-vjzfzshh 160 23 addition addition NN cord-256201-vjzfzshh 160 24 to to IN cord-256201-vjzfzshh 160 25 causing cause VBG cord-256201-vjzfzshh 160 26 mutations mutation NNS cord-256201-vjzfzshh 160 27 directly directly RB cord-256201-vjzfzshh 160 28 by by IN cord-256201-vjzfzshh 160 29 base base NN cord-256201-vjzfzshh 160 30 mispairing mispairing NN cord-256201-vjzfzshh 160 31 , , , cord-256201-vjzfzshh 160 32 5-FU 5-fu ADD cord-256201-vjzfzshh 160 33 inhibits inhibit VBZ cord-256201-vjzfzshh 160 34 thymidylate thymidylate NN cord-256201-vjzfzshh 160 35 synthase synthase NN cord-256201-vjzfzshh 160 36 , , , cord-256201-vjzfzshh 160 37 leading lead VBG cord-256201-vjzfzshh 160 38 to to IN cord-256201-vjzfzshh 160 39 deoxythymidine deoxythymidine NNP cord-256201-vjzfzshh 160 40 monophosphate monophosphate NN cord-256201-vjzfzshh 160 41 deprivation deprivation NN cord-256201-vjzfzshh 160 42 and and CC cord-256201-vjzfzshh 160 43 , , , cord-256201-vjzfzshh 160 44 subsequently subsequently RB cord-256201-vjzfzshh 160 45 , , , cord-256201-vjzfzshh 160 46 to to IN cord-256201-vjzfzshh 160 47 DNA dna NN cord-256201-vjzfzshh 160 48 strand strand NN cord-256201-vjzfzshh 160 49 breaks break NNS cord-256201-vjzfzshh 160 50 , , , cord-256201-vjzfzshh 160 51 induction induction NN cord-256201-vjzfzshh 160 52 of of IN cord-256201-vjzfzshh 160 53 the the DT cord-256201-vjzfzshh 160 54 SOS SOS NNP cord-256201-vjzfzshh 160 55 DNA DNA NNP cord-256201-vjzfzshh 160 56 damage damage NN cord-256201-vjzfzshh 160 57 response response NN cord-256201-vjzfzshh 160 58 ( ( -LRB- cord-256201-vjzfzshh 160 59 DDR DDR NNP cord-256201-vjzfzshh 160 60 ) ) -RRB- cord-256201-vjzfzshh 160 61 , , , cord-256201-vjzfzshh 160 62 and and CC cord-256201-vjzfzshh 160 63 expression expression NN cord-256201-vjzfzshh 160 64 of of IN cord-256201-vjzfzshh 160 65 error error NN cord-256201-vjzfzshh 160 66 - - HYPH cord-256201-vjzfzshh 160 67 prone prone JJ cord-256201-vjzfzshh 160 68 DNA dna NN cord-256201-vjzfzshh 160 69 repair repair NN cord-256201-vjzfzshh 160 70 enzymes enzyme NNS cord-256201-vjzfzshh 160 71 ( ( -LRB- cord-256201-vjzfzshh 160 72 Ahmad Ahmad NNP cord-256201-vjzfzshh 160 73 , , , cord-256201-vjzfzshh 160 74 Kirk Kirk NNP cord-256201-vjzfzshh 160 75 , , , cord-256201-vjzfzshh 160 76 and and CC cord-256201-vjzfzshh 160 77 Eisenstark Eisenstark NNP cord-256201-vjzfzshh 160 78 1998 1998 CD cord-256201-vjzfzshh 160 79 ; ; : cord-256201-vjzfzshh 160 80 Fonville Fonville NNP cord-256201-vjzfzshh 160 81 et et NNP cord-256201-vjzfzshh 160 82 al al NNP cord-256201-vjzfzshh 160 83 . . NNP cord-256201-vjzfzshh 160 84 2010 2010 CD cord-256201-vjzfzshh 160 85 ) ) -RRB- cord-256201-vjzfzshh 160 86 . . . cord-256201-vjzfzshh 161 1 Previously previously RB cord-256201-vjzfzshh 161 2 , , , cord-256201-vjzfzshh 161 3 we -PRON- PRP cord-256201-vjzfzshh 161 4 showed show VBD cord-256201-vjzfzshh 161 5 that that IN cord-256201-vjzfzshh 161 6 this this DT cord-256201-vjzfzshh 161 7 treatment treatment NN cord-256201-vjzfzshh 161 8 increases increase VBZ cord-256201-vjzfzshh 161 9 the the DT cord-256201-vjzfzshh 161 10 mutation mutation NN cord-256201-vjzfzshh 161 11 rate rate NN cord-256201-vjzfzshh 161 12 of of IN cord-256201-vjzfzshh 161 13 the the DT cord-256201-vjzfzshh 161 14 WT WT NNP cord-256201-vjzfzshh 161 15 virus virus NN cord-256201-vjzfzshh 161 16 by by IN cord-256201-vjzfzshh 161 17 approximately approximately RB cord-256201-vjzfzshh 161 18 tenfold tenfold RB cord-256201-vjzfzshh 162 1 ( ( -LRB- cord-256201-vjzfzshh 162 2 Domingo Domingo NNP cord-256201-vjzfzshh 162 3 - - HYPH cord-256201-vjzfzshh 162 4 Calap Calap NNP cord-256201-vjzfzshh 162 5 , , , cord-256201-vjzfzshh 162 6 Pereira Pereira NNP cord-256201-vjzfzshh 162 7 - - HYPH cord-256201-vjzfzshh 162 8 Gomez Gomez NNP cord-256201-vjzfzshh 162 9 , , , cord-256201-vjzfzshh 162 10 and and CC cord-256201-vjzfzshh 162 11 Sanjuán Sanjuán NNP cord-256201-vjzfzshh 162 12 2012 2012 CD cord-256201-vjzfzshh 162 13 ) ) -RRB- cord-256201-vjzfzshh 162 14 . . . cord-256201-vjzfzshh 163 1 Fluctuation fluctuation NN cord-256201-vjzfzshh 163 2 tests test NNS cord-256201-vjzfzshh 163 3 in in IN cord-256201-vjzfzshh 163 4 the the DT cord-256201-vjzfzshh 163 5 presence presence NN cord-256201-vjzfzshh 163 6 of of IN cord-256201-vjzfzshh 163 7 10 10 CD cord-256201-vjzfzshh 163 8 ng ng NN cord-256201-vjzfzshh 163 9 / / SYM cord-256201-vjzfzshh 163 10 ml ml NN cord-256201-vjzfzshh 163 11 5-FU 5-fu CD cord-256201-vjzfzshh 163 12 showed show VBD cord-256201-vjzfzshh 163 13 that that IN cord-256201-vjzfzshh 163 14 the the DT cord-256201-vjzfzshh 163 15 drug drug NN cord-256201-vjzfzshh 163 16 had have VBD cord-256201-vjzfzshh 163 17 a a DT cord-256201-vjzfzshh 163 18 more more RBR cord-256201-vjzfzshh 163 19 pronounced pronounced JJ cord-256201-vjzfzshh 163 20 effect effect NN cord-256201-vjzfzshh 163 21 on on IN cord-256201-vjzfzshh 163 22 the the DT cord-256201-vjzfzshh 163 23 mutation mutation NN cord-256201-vjzfzshh 163 24 rate rate NN cord-256201-vjzfzshh 163 25 of of IN cord-256201-vjzfzshh 163 26 the the DT cord-256201-vjzfzshh 163 27 20GATC 20gatc CD cord-256201-vjzfzshh 163 28 virus virus NN cord-256201-vjzfzshh 163 29 , , , cord-256201-vjzfzshh 163 30 which which WDT cord-256201-vjzfzshh 163 31 increased increase VBD cord-256201-vjzfzshh 163 32 more more JJR cord-256201-vjzfzshh 163 33 than than IN cord-256201-vjzfzshh 163 34 a a DT cord-256201-vjzfzshh 163 35 100-fold 100-fold CD cord-256201-vjzfzshh 163 36 ( ( -LRB- cord-256201-vjzfzshh 163 37 Table table NN cord-256201-vjzfzshh 163 38 2 2 CD cord-256201-vjzfzshh 163 39 ; ; : cord-256201-vjzfzshh 163 40 Fig Fig NNP cord-256201-vjzfzshh 163 41 . . . cord-256201-vjzfzshh 163 42 4A 4a CD cord-256201-vjzfzshh 163 43 ) ) -RRB- cord-256201-vjzfzshh 163 44 . . . cord-256201-vjzfzshh 164 1 As as IN cord-256201-vjzfzshh 164 2 a a DT cord-256201-vjzfzshh 164 3 result result NN cord-256201-vjzfzshh 164 4 , , , cord-256201-vjzfzshh 164 5 the the DT cord-256201-vjzfzshh 164 6 difference difference NN cord-256201-vjzfzshh 164 7 in in IN cord-256201-vjzfzshh 164 8 mutation mutation NN cord-256201-vjzfzshh 164 9 rate rate NN cord-256201-vjzfzshh 164 10 between between IN cord-256201-vjzfzshh 164 11 the the DT cord-256201-vjzfzshh 164 12 20GATC 20gatc CD cord-256201-vjzfzshh 164 13 and and CC cord-256201-vjzfzshh 164 14 WT WT NNP cord-256201-vjzfzshh 164 15 viruses virus NNS cord-256201-vjzfzshh 164 16 was be VBD cord-256201-vjzfzshh 164 17 fully fully RB cord-256201-vjzfzshh 164 18 abolished abolish VBN cord-256201-vjzfzshh 164 19 in in IN cord-256201-vjzfzshh 164 20 the the DT cord-256201-vjzfzshh 164 21 presence presence NN cord-256201-vjzfzshh 164 22 of of IN cord-256201-vjzfzshh 164 23 5-FU 5-fu CD cord-256201-vjzfzshh 164 24 ( ( -LRB- cord-256201-vjzfzshh 164 25 t t NN cord-256201-vjzfzshh 164 26 - - HYPH cord-256201-vjzfzshh 164 27 test test NN cord-256201-vjzfzshh 164 28 : : : cord-256201-vjzfzshh 164 29 P p NN cord-256201-vjzfzshh 164 30 ¼ ¼ CD cord-256201-vjzfzshh 164 31 0.951 0.951 CD cord-256201-vjzfzshh 164 32 ) ) -RRB- cord-256201-vjzfzshh 164 33 . . . cord-256201-vjzfzshh 165 1 We -PRON- PRP cord-256201-vjzfzshh 165 2 have have VBP cord-256201-vjzfzshh 165 3 shown show VBN cord-256201-vjzfzshh 165 4 that that DT cord-256201-vjzfzshh 165 5 introduction introduction NN cord-256201-vjzfzshh 165 6 of of IN cord-256201-vjzfzshh 165 7 GATC GATC NNP cord-256201-vjzfzshh 165 8 sites site NNS cord-256201-vjzfzshh 165 9 in in IN cord-256201-vjzfzshh 165 10 the the DT cord-256201-vjzfzshh 165 11 /X174 /X174 NFP cord-256201-vjzfzshh 165 12 genome genome NN cord-256201-vjzfzshh 165 13 can can MD cord-256201-vjzfzshh 165 14 reduce reduce VB cord-256201-vjzfzshh 165 15 the the DT cord-256201-vjzfzshh 165 16 spontaneous spontaneous JJ cord-256201-vjzfzshh 165 17 mutation mutation NN cord-256201-vjzfzshh 165 18 rate rate NN cord-256201-vjzfzshh 165 19 of of IN cord-256201-vjzfzshh 165 20 the the DT cord-256201-vjzfzshh 165 21 phage phage NN cord-256201-vjzfzshh 165 22 by by IN cord-256201-vjzfzshh 165 23 up up IN cord-256201-vjzfzshh 165 24 to to IN cord-256201-vjzfzshh 165 25 fiftyfold fiftyfold NN cord-256201-vjzfzshh 165 26 , , , cord-256201-vjzfzshh 165 27 indicating indicate VBG cord-256201-vjzfzshh 165 28 that that IN cord-256201-vjzfzshh 165 29 phage phage NN cord-256201-vjzfzshh 165 30 DNA dna NN cord-256201-vjzfzshh 165 31 can can MD cord-256201-vjzfzshh 165 32 undergo undergo VB cord-256201-vjzfzshh 165 33 MMR MMR NNP cord-256201-vjzfzshh 165 34 if if IN cord-256201-vjzfzshh 165 35 the the DT cord-256201-vjzfzshh 165 36 required require VBN cord-256201-vjzfzshh 165 37 sequence sequence NN cord-256201-vjzfzshh 165 38 motifs motif NNS cord-256201-vjzfzshh 165 39 are be VBP cord-256201-vjzfzshh 165 40 present present JJ cord-256201-vjzfzshh 165 41 . . . cord-256201-vjzfzshh 166 1 The the DT cord-256201-vjzfzshh 166 2 effect effect NN cord-256201-vjzfzshh 166 3 of of IN cord-256201-vjzfzshh 166 4 GATC GATC NNP cord-256201-vjzfzshh 166 5 addition addition NN cord-256201-vjzfzshh 166 6 is be VBZ cord-256201-vjzfzshh 166 7 greater great JJR cord-256201-vjzfzshh 166 8 than than IN cord-256201-vjzfzshh 166 9 those those DT cord-256201-vjzfzshh 166 10 reported report VBN cord-256201-vjzfzshh 166 11 previously previously RB cord-256201-vjzfzshh 166 12 in in IN cord-256201-vjzfzshh 166 13 RNA RNA NNP cord-256201-vjzfzshh 166 14 viruses virus NNS cord-256201-vjzfzshh 166 15 , , , cord-256201-vjzfzshh 166 16 in in IN cord-256201-vjzfzshh 166 17 which which WDT cord-256201-vjzfzshh 166 18 high high JJ cord-256201-vjzfzshh 166 19 - - HYPH cord-256201-vjzfzshh 166 20 fidelity fidelity NN cord-256201-vjzfzshh 166 21 polymerase polymerase NN cord-256201-vjzfzshh 166 22 variants variant NNS cord-256201-vjzfzshh 166 23 selected select VBN cord-256201-vjzfzshh 166 24 after after IN cord-256201-vjzfzshh 166 25 serial serial JJ cord-256201-vjzfzshh 166 26 transfers transfer NNS cord-256201-vjzfzshh 166 27 in in IN cord-256201-vjzfzshh 166 28 the the DT cord-256201-vjzfzshh 166 29 presence presence NN cord-256201-vjzfzshh 166 30 of of IN cord-256201-vjzfzshh 166 31 nucleoside nucleoside JJ cord-256201-vjzfzshh 166 32 analogs analog NNS cord-256201-vjzfzshh 166 33 typically typically RB cord-256201-vjzfzshh 166 34 reduce reduce VBP cord-256201-vjzfzshh 166 35 the the DT cord-256201-vjzfzshh 166 36 viral viral JJ cord-256201-vjzfzshh 166 37 mutation mutation NN cord-256201-vjzfzshh 166 38 rate rate NN cord-256201-vjzfzshh 166 39 by by IN cord-256201-vjzfzshh 166 40 threefold threefold NN cord-256201-vjzfzshh 166 41 or or CC cord-256201-vjzfzshh 166 42 less less JJR cord-256201-vjzfzshh 167 1 ( ( -LRB- cord-256201-vjzfzshh 167 2 Pfeiffer Pfeiffer NNP cord-256201-vjzfzshh 167 3 and and CC cord-256201-vjzfzshh 167 4 Kirkegaard Kirkegaard NNP cord-256201-vjzfzshh 167 5 2003 2003 CD cord-256201-vjzfzshh 167 6 ; ; : cord-256201-vjzfzshh 167 7 Coffey Coffey NNP cord-256201-vjzfzshh 167 8 et et NNP cord-256201-vjzfzshh 167 9 al al NNP cord-256201-vjzfzshh 167 10 . . NNP cord-256201-vjzfzshh 167 11 2011 2011 CD cord-256201-vjzfzshh 167 12 ) ) -RRB- cord-256201-vjzfzshh 167 13 . . . cord-256201-vjzfzshh 168 1 A a DT cord-256201-vjzfzshh 168 2 similarly similarly RB cord-256201-vjzfzshh 168 3 modest modest JJ cord-256201-vjzfzshh 168 4 effect effect NN cord-256201-vjzfzshh 168 5 was be VBD cord-256201-vjzfzshh 168 6 observed observe VBN cord-256201-vjzfzshh 168 7 after after IN cord-256201-vjzfzshh 168 8 serial serial JJ cord-256201-vjzfzshh 168 9 passaging passaging NN cord-256201-vjzfzshh 168 10 of of IN cord-256201-vjzfzshh 168 11 /X174 /X174 . cord-256201-vjzfzshh 169 1 in in IN cord-256201-vjzfzshh 169 2 the the DT cord-256201-vjzfzshh 169 3 presence presence NN cord-256201-vjzfzshh 169 4 of of IN cord-256201-vjzfzshh 169 5 5-FU 5-fu CD cord-256201-vjzfzshh 170 1 ( ( -LRB- cord-256201-vjzfzshh 170 2 Domingo Domingo NNP cord-256201-vjzfzshh 170 3 - - HYPH cord-256201-vjzfzshh 170 4 Calap Calap NNP cord-256201-vjzfzshh 170 5 , , , cord-256201-vjzfzshh 170 6 Pereira Pereira NNP cord-256201-vjzfzshh 170 7 - - HYPH cord-256201-vjzfzshh 170 8 Gomez Gomez NNP cord-256201-vjzfzshh 170 9 , , , cord-256201-vjzfzshh 170 10 and and CC cord-256201-vjzfzshh 170 11 Sanjuá Sanjuá NNP cord-256201-vjzfzshh 170 12 n n NNP cord-256201-vjzfzshh 170 13 2012 2012 CD cord-256201-vjzfzshh 170 14 ) ) -RRB- cord-256201-vjzfzshh 170 15 . . . cord-256201-vjzfzshh 171 1 In in IN cord-256201-vjzfzshh 171 2 that that DT cord-256201-vjzfzshh 171 3 case case NN cord-256201-vjzfzshh 171 4 , , , cord-256201-vjzfzshh 171 5 the the DT cord-256201-vjzfzshh 171 6 anti anti JJ cord-256201-vjzfzshh 171 7 - - JJ cord-256201-vjzfzshh 171 8 mutator mutator JJ cord-256201-vjzfzshh 171 9 phenotype phenotype NN cord-256201-vjzfzshh 171 10 was be VBD cord-256201-vjzfzshh 171 11 achieved achieve VBN cord-256201-vjzfzshh 171 12 by by IN cord-256201-vjzfzshh 171 13 a a DT cord-256201-vjzfzshh 171 14 delayed delay VBN cord-256201-vjzfzshh 171 15 lysis lysis NN cord-256201-vjzfzshh 171 16 , , , cord-256201-vjzfzshh 171 17 which which WDT cord-256201-vjzfzshh 171 18 increased increase VBD cord-256201-vjzfzshh 171 19 the the DT cord-256201-vjzfzshh 171 20 viral viral JJ cord-256201-vjzfzshh 171 21 burst burst NN cord-256201-vjzfzshh 171 22 size size NN cord-256201-vjzfzshh 171 23 per per IN cord-256201-vjzfzshh 171 24 cell cell NN cord-256201-vjzfzshh 171 25 and and CC cord-256201-vjzfzshh 171 26 thus thus RB cord-256201-vjzfzshh 171 27 allowed allow VBD cord-256201-vjzfzshh 171 28 the the DT cord-256201-vjzfzshh 171 29 phage phage NN cord-256201-vjzfzshh 171 30 to to TO cord-256201-vjzfzshh 171 31 expand expand VB cord-256201-vjzfzshh 171 32 its -PRON- PRP$ cord-256201-vjzfzshh 171 33 population population NN cord-256201-vjzfzshh 171 34 size size NN cord-256201-vjzfzshh 171 35 in in IN cord-256201-vjzfzshh 171 36 fewer few JJR cord-256201-vjzfzshh 171 37 rounds round NNS cord-256201-vjzfzshh 171 38 of of IN cord-256201-vjzfzshh 171 39 copying copying NN cord-256201-vjzfzshh 172 1 ( ( -LRB- cord-256201-vjzfzshh 172 2 Pereira Pereira NNP cord-256201-vjzfzshh 172 3 - - HYPH cord-256201-vjzfzshh 172 4 Gó Gó NNP cord-256201-vjzfzshh 172 5 mez mez NNP cord-256201-vjzfzshh 172 6 and and CC cord-256201-vjzfzshh 172 7 Sanjuá Sanjuá NNP cord-256201-vjzfzshh 172 8 n n NNP cord-256201-vjzfzshh 172 9 2014 2014 CD cord-256201-vjzfzshh 172 10 ) ) -RRB- cord-256201-vjzfzshh 172 11 . . . cord-256201-vjzfzshh 173 1 In in IN cord-256201-vjzfzshh 173 2 the the DT cord-256201-vjzfzshh 173 3 dsDNA dsdna JJ cord-256201-vjzfzshh 173 4 bacteriophage bacteriophage NN cord-256201-vjzfzshh 173 5 T4 T4 NNP cord-256201-vjzfzshh 173 6 , , , cord-256201-vjzfzshh 173 7 a a DT cord-256201-vjzfzshh 173 8 series series NN cord-256201-vjzfzshh 173 9 of of IN cord-256201-vjzfzshh 173 10 polymerase polymerase NN cord-256201-vjzfzshh 173 11 variants variant NNS cord-256201-vjzfzshh 173 12 capable capable JJ cord-256201-vjzfzshh 173 13 of of IN cord-256201-vjzfzshh 173 14 strongly strongly RB cord-256201-vjzfzshh 173 15 suppressing suppress VBG cord-256201-vjzfzshh 173 16 the the DT cord-256201-vjzfzshh 173 17 action action NN cord-256201-vjzfzshh 173 18 of of IN cord-256201-vjzfzshh 173 19 chemical chemical NN cord-256201-vjzfzshh 173 20 mutagens mutagen NNS cord-256201-vjzfzshh 173 21 were be VBD cord-256201-vjzfzshh 173 22 isolated isolate VBN cord-256201-vjzfzshh 173 23 in in IN cord-256201-vjzfzshh 173 24 early early JJ cord-256201-vjzfzshh 173 25 studies study NNS cord-256201-vjzfzshh 173 26 ( ( -LRB- cord-256201-vjzfzshh 173 27 Drake Drake NNP cord-256201-vjzfzshh 173 28 et et NNP cord-256201-vjzfzshh 173 29 al al NNP cord-256201-vjzfzshh 173 30 . . NNP cord-256201-vjzfzshh 173 31 1969 1969 CD cord-256201-vjzfzshh 173 32 ; ; : cord-256201-vjzfzshh 173 33 Drake Drake NNP cord-256201-vjzfzshh 173 34 and and CC cord-256201-vjzfzshh 173 35 Greening Greening NNP cord-256201-vjzfzshh 173 36 1970 1970 CD cord-256201-vjzfzshh 173 37 ) ) -RRB- cord-256201-vjzfzshh 173 38 . . . cord-256201-vjzfzshh 174 1 However however RB cord-256201-vjzfzshh 174 2 , , , cord-256201-vjzfzshh 174 3 high high JJ cord-256201-vjzfzshh 174 4 fidelity fidelity NN cord-256201-vjzfzshh 174 5 variants variant NNS cord-256201-vjzfzshh 174 6 of of IN cord-256201-vjzfzshh 174 7 T4 T4 NNP cord-256201-vjzfzshh 174 8 polymerase polymerase NN cord-256201-vjzfzshh 174 9 tend tend VBP cord-256201-vjzfzshh 174 10 to to TO cord-256201-vjzfzshh 174 11 show show VB cord-256201-vjzfzshh 174 12 diminished diminished JJ cord-256201-vjzfzshh 174 13 polymerization polymerization NN cord-256201-vjzfzshh 174 14 rates rate NNS cord-256201-vjzfzshh 174 15 , , , cord-256201-vjzfzshh 174 16 therefore therefore RB cord-256201-vjzfzshh 174 17 negatively negatively RB cord-256201-vjzfzshh 174 18 impacting impact VBG cord-256201-vjzfzshh 174 19 viral viral JJ cord-256201-vjzfzshh 174 20 fitness fitness NN cord-256201-vjzfzshh 174 21 ( ( -LRB- cord-256201-vjzfzshh 174 22 Mansky Mansky NNP cord-256201-vjzfzshh 174 23 and and CC cord-256201-vjzfzshh 174 24 Cunningham Cunningham NNP cord-256201-vjzfzshh 174 25 2000 2000 CD cord-256201-vjzfzshh 174 26 ) ) -RRB- cord-256201-vjzfzshh 174 27 . . . cord-256201-vjzfzshh 175 1 In in IN cord-256201-vjzfzshh 175 2 E. E. NNP cord-256201-vjzfzshh 175 3 coli coli NNS cord-256201-vjzfzshh 175 4 , , , cord-256201-vjzfzshh 175 5 Figure figure NN cord-256201-vjzfzshh 175 6 3 3 CD cord-256201-vjzfzshh 175 7 . . . cord-256201-vjzfzshh 176 1 Restriction restriction NN cord-256201-vjzfzshh 176 2 fragment fragment NN cord-256201-vjzfzshh 176 3 analysis analysis NN cord-256201-vjzfzshh 176 4 of of IN cord-256201-vjzfzshh 176 5 the the DT cord-256201-vjzfzshh 176 6 /X174 /X174 NFP cord-256201-vjzfzshh 176 7 replicative replicative JJ cord-256201-vjzfzshh 176 8 dsDNA dsdna RB cord-256201-vjzfzshh 176 9 . . . cord-256201-vjzfzshh 177 1 Phage phage NN cord-256201-vjzfzshh 177 2 dsDNA dsdna RB cord-256201-vjzfzshh 177 3 was be VBD cord-256201-vjzfzshh 177 4 purified purify VBN cord-256201-vjzfzshh 177 5 by by IN cord-256201-vjzfzshh 177 6 standard standard JJ cord-256201-vjzfzshh 177 7 miniprep miniprep NNP cord-256201-vjzfzshh 177 8 as as IN cord-256201-vjzfzshh 177 9 described describe VBN cord-256201-vjzfzshh 177 10 in in IN cord-256201-vjzfzshh 177 11 the the DT cord-256201-vjzfzshh 177 12 Materials Materials NNPS cord-256201-vjzfzshh 177 13 and and CC cord-256201-vjzfzshh 177 14 Methods Methods NNPS cord-256201-vjzfzshh 177 15 section section NN cord-256201-vjzfzshh 177 16 and and CC cord-256201-vjzfzshh 177 17 linearized linearize VBN cord-256201-vjzfzshh 177 18 with with IN cord-256201-vjzfzshh 177 19 XhoI XhoI NNP cord-256201-vjzfzshh 177 20 ( ( -LRB- cord-256201-vjzfzshh 177 21 ø ø NN cord-256201-vjzfzshh 177 22 ) ) -RRB- cord-256201-vjzfzshh 177 23 , , , cord-256201-vjzfzshh 177 24 which which WDT cord-256201-vjzfzshh 177 25 recognizes recognize VBZ cord-256201-vjzfzshh 177 26 a a DT cord-256201-vjzfzshh 177 27 unique unique JJ cord-256201-vjzfzshh 177 28 site site NN cord-256201-vjzfzshh 177 29 at at IN cord-256201-vjzfzshh 177 30 position position NN cord-256201-vjzfzshh 177 31 162 162 CD cord-256201-vjzfzshh 177 32 , , , cord-256201-vjzfzshh 177 33 with with IN cord-256201-vjzfzshh 177 34 XhoI XhoI NNP cord-256201-vjzfzshh 177 35 and and CC cord-256201-vjzfzshh 177 36 DpnI DpnI NNP cord-256201-vjzfzshh 177 37 to to TO cord-256201-vjzfzshh 177 38 cleave cleave VB cord-256201-vjzfzshh 177 39 methylated methylate VBN cord-256201-vjzfzshh 177 40 or or CC cord-256201-vjzfzshh 177 41 hemi hemi NN cord-256201-vjzfzshh 177 42 - - HYPH cord-256201-vjzfzshh 177 43 methylated methylate VBN cord-256201-vjzfzshh 177 44 GATCs GATCs NNP cord-256201-vjzfzshh 177 45 , , , cord-256201-vjzfzshh 177 46 or or CC cord-256201-vjzfzshh 177 47 with with IN cord-256201-vjzfzshh 177 48 XhoI XhoI NNP cord-256201-vjzfzshh 177 49 and and CC cord-256201-vjzfzshh 177 50 MboI MboI NNP cord-256201-vjzfzshh 177 51 to to TO cord-256201-vjzfzshh 177 52 cleave cleave VB cord-256201-vjzfzshh 177 53 non non JJ cord-256201-vjzfzshh 177 54 - - JJ cord-256201-vjzfzshh 177 55 methylated methylated JJ cord-256201-vjzfzshh 177 56 GATCs gatc NNS cord-256201-vjzfzshh 177 57 . . . cord-256201-vjzfzshh 178 1 Expected expect VBN cord-256201-vjzfzshh 178 2 ( ( -LRB- cord-256201-vjzfzshh 178 3 left leave VBN cord-256201-vjzfzshh 178 4 ) ) -RRB- cord-256201-vjzfzshh 178 5 and and CC cord-256201-vjzfzshh 178 6 observed observe VBD cord-256201-vjzfzshh 178 7 ( ( -LRB- cord-256201-vjzfzshh 178 8 center center NN cord-256201-vjzfzshh 178 9 ) ) -RRB- cord-256201-vjzfzshh 178 10 restriction restriction NN cord-256201-vjzfzshh 178 11 fragments fragment NNS cord-256201-vjzfzshh 178 12 for for IN cord-256201-vjzfzshh 178 13 the the DT cord-256201-vjzfzshh 178 14 WT WT NNP cord-256201-vjzfzshh 178 15 and and CC cord-256201-vjzfzshh 178 16 4GATC 4gatc CD cord-256201-vjzfzshh 178 17 phage phage NN cord-256201-vjzfzshh 179 1 dsDNA dsDNA NNP cord-256201-vjzfzshh 179 2 are be VBP cord-256201-vjzfzshh 179 3 shown show VBN cord-256201-vjzfzshh 179 4 . . . cord-256201-vjzfzshh 180 1 Lower low JJR cord-256201-vjzfzshh 180 2 size size NN cord-256201-vjzfzshh 180 3 fragments fragment NNS cord-256201-vjzfzshh 180 4 ( ( -LRB- cord-256201-vjzfzshh 180 5 < < NNP cord-256201-vjzfzshh 180 6 300 300 CD cord-256201-vjzfzshh 180 7 bp bp NNP cord-256201-vjzfzshh 180 8 , , , cord-256201-vjzfzshh 180 9 Fig Fig NNP cord-256201-vjzfzshh 180 10 . . NNP cord-256201-vjzfzshh 180 11 1 1 CD cord-256201-vjzfzshh 180 12 ) ) -RRB- cord-256201-vjzfzshh 180 13 were be VBD cord-256201-vjzfzshh 180 14 expected expect VBN cord-256201-vjzfzshh 180 15 but but CC cord-256201-vjzfzshh 180 16 could could MD cord-256201-vjzfzshh 180 17 not not RB cord-256201-vjzfzshh 180 18 be be VB cord-256201-vjzfzshh 180 19 visualized visualize VBN cord-256201-vjzfzshh 180 20 because because IN cord-256201-vjzfzshh 180 21 the the DT cord-256201-vjzfzshh 180 22 amount amount NN cord-256201-vjzfzshh 180 23 of of IN cord-256201-vjzfzshh 180 24 input input NN cord-256201-vjzfzshh 180 25 DNA dna NN cord-256201-vjzfzshh 180 26 was be VBD cord-256201-vjzfzshh 180 27 low low JJ cord-256201-vjzfzshh 180 28 . . . cord-256201-vjzfzshh 181 1 The the DT cord-256201-vjzfzshh 181 2 smear smear NN cord-256201-vjzfzshh 181 3 in in IN cord-256201-vjzfzshh 181 4 lanes lane NNS cord-256201-vjzfzshh 181 5 containing contain VBG cord-256201-vjzfzshh 181 6 the the DT cord-256201-vjzfzshh 181 7 purified purify VBN cord-256201-vjzfzshh 181 8 phage phage NN cord-256201-vjzfzshh 181 9 DNA dna NN cord-256201-vjzfzshh 181 10 probably probably RB cord-256201-vjzfzshh 181 11 results result VBZ cord-256201-vjzfzshh 181 12 from from IN cord-256201-vjzfzshh 181 13 degradation degradation NN cord-256201-vjzfzshh 181 14 of of IN cord-256201-vjzfzshh 181 15 host host NN cord-256201-vjzfzshh 181 16 DNA dna NN cord-256201-vjzfzshh 181 17 . . . cord-256201-vjzfzshh 182 1 The the DT cord-256201-vjzfzshh 182 2 contrast contrast NN cord-256201-vjzfzshh 182 3 of of IN cord-256201-vjzfzshh 182 4 the the DT cord-256201-vjzfzshh 182 5 gel gel NN cord-256201-vjzfzshh 182 6 image image NN cord-256201-vjzfzshh 182 7 was be VBD cord-256201-vjzfzshh 182 8 enhanced enhance VBN cord-256201-vjzfzshh 182 9 to to TO cord-256201-vjzfzshh 182 10 help help VB cord-256201-vjzfzshh 182 11 visualize visualize VB cord-256201-vjzfzshh 182 12 bands band NNS cord-256201-vjzfzshh 182 13 . . . cord-256201-vjzfzshh 183 1 Right right RB cord-256201-vjzfzshh 183 2 : : : cord-256201-vjzfzshh 183 3 percent percent NN cord-256201-vjzfzshh 183 4 abundance abundance NN cord-256201-vjzfzshh 183 5 of of IN cord-256201-vjzfzshh 183 6 each each DT cord-256201-vjzfzshh 183 7 DpnI DpnI NNP cord-256201-vjzfzshh 183 8 and and CC cord-256201-vjzfzshh 183 9 MboI MboI NNP cord-256201-vjzfzshh 183 10 restriction restriction NN cord-256201-vjzfzshh 183 11 band band NN cord-256201-vjzfzshh 183 12 ( ( -LRB- cord-256201-vjzfzshh 183 13 1 1 CD cord-256201-vjzfzshh 183 14 - - SYM cord-256201-vjzfzshh 183 15 4 4 CD cord-256201-vjzfzshh 183 16 ) ) -RRB- cord-256201-vjzfzshh 183 17 . . . cord-256201-vjzfzshh 184 1 Band band NN cord-256201-vjzfzshh 184 2 1 1 CD cord-256201-vjzfzshh 184 3 in in IN cord-256201-vjzfzshh 184 4 the the DT cord-256201-vjzfzshh 184 5 DpnI DpnI NNP cord-256201-vjzfzshh 184 6 lane lane NN cord-256201-vjzfzshh 184 7 indicates indicate VBZ cord-256201-vjzfzshh 184 8 the the DT cord-256201-vjzfzshh 184 9 non non JJ cord-256201-vjzfzshh 184 10 - - JJ cord-256201-vjzfzshh 184 11 methylated methylated JJ cord-256201-vjzfzshh 184 12 DNA dna NN cord-256201-vjzfzshh 184 13 fraction fraction NN cord-256201-vjzfzshh 184 14 ( ( -LRB- cord-256201-vjzfzshh 184 15 i.e. i.e. FW cord-256201-vjzfzshh 184 16 , , , cord-256201-vjzfzshh 184 17 none none NN cord-256201-vjzfzshh 184 18 of of IN cord-256201-vjzfzshh 184 19 the the DT cord-256201-vjzfzshh 184 20 four four CD cord-256201-vjzfzshh 184 21 GATC GATC NNP cord-256201-vjzfzshh 184 22 motifs motif NNS cord-256201-vjzfzshh 184 23 was be VBD cord-256201-vjzfzshh 184 24 methylated methylate VBN cord-256201-vjzfzshh 184 25 ) ) -RRB- cord-256201-vjzfzshh 184 26 , , , cord-256201-vjzfzshh 184 27 whereas whereas IN cord-256201-vjzfzshh 184 28 in in IN cord-256201-vjzfzshh 184 29 the the DT cord-256201-vjzfzshh 184 30 MboI MboI NNP cord-256201-vjzfzshh 184 31 lane lane NN cord-256201-vjzfzshh 184 32 , , , cord-256201-vjzfzshh 184 33 this this DT cord-256201-vjzfzshh 184 34 same same JJ cord-256201-vjzfzshh 184 35 band band NN cord-256201-vjzfzshh 184 36 indicates indicate VBZ cord-256201-vjzfzshh 184 37 the the DT cord-256201-vjzfzshh 184 38 fully fully RB cord-256201-vjzfzshh 184 39 methylated methylate VBN cord-256201-vjzfzshh 184 40 fraction fraction NN cord-256201-vjzfzshh 184 41 ( ( -LRB- cord-256201-vjzfzshh 184 42 i.e. i.e. FW cord-256201-vjzfzshh 184 43 , , , cord-256201-vjzfzshh 184 44 the the DT cord-256201-vjzfzshh 184 45 four four CD cord-256201-vjzfzshh 184 46 GATC GATC NNP cord-256201-vjzfzshh 184 47 motifs motif NNS cord-256201-vjzfzshh 184 48 were be VBD cord-256201-vjzfzshh 184 49 methylated methylate VBN cord-256201-vjzfzshh 184 50 ) ) -RRB- cord-256201-vjzfzshh 184 51 . . . cord-256201-vjzfzshh 185 1 Bands band NNS cord-256201-vjzfzshh 185 2 were be VBD cord-256201-vjzfzshh 185 3 quantified quantify VBN cord-256201-vjzfzshh 185 4 as as IN cord-256201-vjzfzshh 185 5 detailed detail VBN cord-256201-vjzfzshh 185 6 in in IN cord-256201-vjzfzshh 185 7 the the DT cord-256201-vjzfzshh 185 8 Materials Materials NNPS cord-256201-vjzfzshh 185 9 and and CC cord-256201-vjzfzshh 185 10 Methods Methods NNPS cord-256201-vjzfzshh 185 11 section section NN cord-256201-vjzfzshh 185 12 using use VBG cord-256201-vjzfzshh 185 13 the the DT cord-256201-vjzfzshh 185 14 raw raw JJ cord-256201-vjzfzshh 185 15 gel gel NN cord-256201-vjzfzshh 185 16 image image NN cord-256201-vjzfzshh 185 17 with with IN cord-256201-vjzfzshh 185 18 no no DT cord-256201-vjzfzshh 185 19 contrast contrast NN cord-256201-vjzfzshh 185 20 enhancement enhancement NN cord-256201-vjzfzshh 185 21 . . . cord-256201-vjzfzshh 186 1 changes change NNS cord-256201-vjzfzshh 186 2 in in IN cord-256201-vjzfzshh 186 3 the the DT cord-256201-vjzfzshh 186 4 a a DT cord-256201-vjzfzshh 186 5 subunit subunit NN cord-256201-vjzfzshh 186 6 of of IN cord-256201-vjzfzshh 186 7 DNA dna NN cord-256201-vjzfzshh 186 8 polymerase polymerase NN cord-256201-vjzfzshh 186 9 III III NNP cord-256201-vjzfzshh 186 10 can can MD cord-256201-vjzfzshh 186 11 increase increase VB cord-256201-vjzfzshh 186 12 replication replication NN cord-256201-vjzfzshh 186 13 fidelity fidelity NN cord-256201-vjzfzshh 186 14 between between IN cord-256201-vjzfzshh 186 15 two two CD cord-256201-vjzfzshh 186 16 - - HYPH cord-256201-vjzfzshh 186 17 and and CC cord-256201-vjzfzshh 186 18 thirtyfold thirtyfold JJ cord-256201-vjzfzshh 186 19 ( ( -LRB- cord-256201-vjzfzshh 186 20 Fijalkowska Fijalkowska NNP cord-256201-vjzfzshh 186 21 , , , cord-256201-vjzfzshh 186 22 Dunn Dunn NNP cord-256201-vjzfzshh 186 23 , , , cord-256201-vjzfzshh 186 24 and and CC cord-256201-vjzfzshh 186 25 Schaaper Schaaper NNP cord-256201-vjzfzshh 186 26 1993 1993 CD cord-256201-vjzfzshh 186 27 ) ) -RRB- cord-256201-vjzfzshh 186 28 . . . cord-256201-vjzfzshh 187 1 A a DT cord-256201-vjzfzshh 187 2 stronger strong JJR cord-256201-vjzfzshh 187 3 anti anti JJ cord-256201-vjzfzshh 187 4 - - JJ cord-256201-vjzfzshh 187 5 mutator mutator JJ cord-256201-vjzfzshh 187 6 phenotype phenotype NN cord-256201-vjzfzshh 187 7 was be VBD cord-256201-vjzfzshh 187 8 found find VBN cord-256201-vjzfzshh 187 9 in in IN cord-256201-vjzfzshh 187 10 the the DT cord-256201-vjzfzshh 187 11 adenine adenine NN cord-256201-vjzfzshh 187 12 - - HYPH cord-256201-vjzfzshh 187 13 dependent dependent JJ cord-256201-vjzfzshh 187 14 E. E. NNP cord-256201-vjzfzshh 187 15 coli coli NNS cord-256201-vjzfzshh 187 16 mud mud NN cord-256201-vjzfzshh 187 17 strain strain NN cord-256201-vjzfzshh 187 18 , , , cord-256201-vjzfzshh 187 19 but but CC cord-256201-vjzfzshh 187 20 latter latter JJ cord-256201-vjzfzshh 187 21 analyses analysis NNS cord-256201-vjzfzshh 187 22 suggested suggest VBD cord-256201-vjzfzshh 187 23 that that IN cord-256201-vjzfzshh 187 24 this this DT cord-256201-vjzfzshh 187 25 was be VBD cord-256201-vjzfzshh 187 26 probably probably RB cord-256201-vjzfzshh 187 27 due due JJ cord-256201-vjzfzshh 187 28 to to IN cord-256201-vjzfzshh 187 29 poor poor JJ cord-256201-vjzfzshh 187 30 detection detection NN cord-256201-vjzfzshh 187 31 of of IN cord-256201-vjzfzshh 187 32 mutants mutant NNS cord-256201-vjzfzshh 187 33 ( ( -LRB- cord-256201-vjzfzshh 187 34 Schaaper Schaaper NNP cord-256201-vjzfzshh 187 35 1998 1998 CD cord-256201-vjzfzshh 187 36 ) ) -RRB- cord-256201-vjzfzshh 187 37 . . . cord-256201-vjzfzshh 188 1 In in IN cord-256201-vjzfzshh 188 2 another another DT cord-256201-vjzfzshh 188 3 study study NN cord-256201-vjzfzshh 188 4 , , , cord-256201-vjzfzshh 188 5 E. E. NNP cord-256201-vjzfzshh 188 6 coli coli NNS cord-256201-vjzfzshh 188 7 clones clone NNS cord-256201-vjzfzshh 188 8 were be VBD cord-256201-vjzfzshh 188 9 isolated isolate VBN cord-256201-vjzfzshh 188 10 with with IN cord-256201-vjzfzshh 188 11 an an DT cord-256201-vjzfzshh 188 12 up up NN cord-256201-vjzfzshh 188 13 to to IN cord-256201-vjzfzshh 188 14 fiftyfold fiftyfold JJ cord-256201-vjzfzshh 188 15 anti anti JJ cord-256201-vjzfzshh 188 16 - - JJ cord-256201-vjzfzshh 188 17 mutator mutator JJ cord-256201-vjzfzshh 188 18 phenotype phenotype NN cord-256201-vjzfzshh 188 19 , , , cord-256201-vjzfzshh 188 20 but but CC cord-256201-vjzfzshh 188 21 the the DT cord-256201-vjzfzshh 188 22 underlying underlie VBG cord-256201-vjzfzshh 188 23 mechanisms mechanism NNS cord-256201-vjzfzshh 188 24 remained remain VBD cord-256201-vjzfzshh 188 25 undetermined undetermined JJ cord-256201-vjzfzshh 188 26 ( ( -LRB- cord-256201-vjzfzshh 188 27 Quinones Quinones NNP cord-256201-vjzfzshh 188 28 and and CC cord-256201-vjzfzshh 188 29 Piechocki Piechocki NNP cord-256201-vjzfzshh 188 30 1985 1985 CD cord-256201-vjzfzshh 188 31 ) ) -RRB- cord-256201-vjzfzshh 188 32 . . . cord-256201-vjzfzshh 189 1 Therefore therefore RB cord-256201-vjzfzshh 189 2 , , , cord-256201-vjzfzshh 189 3 the the DT cord-256201-vjzfzshh 189 4 magnitude magnitude NN cord-256201-vjzfzshh 189 5 of of IN cord-256201-vjzfzshh 189 6 the the DT cord-256201-vjzfzshh 189 7 mutation mutation NN cord-256201-vjzfzshh 189 8 rate rate NN cord-256201-vjzfzshh 189 9 reduction reduction NN cord-256201-vjzfzshh 189 10 afforded afford VBN cord-256201-vjzfzshh 189 11 by by IN cord-256201-vjzfzshh 189 12 the the DT cord-256201-vjzfzshh 189 13 introduction introduction NN cord-256201-vjzfzshh 189 14 of of IN cord-256201-vjzfzshh 189 15 GATC GATC NNP cord-256201-vjzfzshh 189 16 motifs motif NNS cord-256201-vjzfzshh 189 17 is be VBZ cord-256201-vjzfzshh 189 18 similar similar JJ cord-256201-vjzfzshh 189 19 or or CC cord-256201-vjzfzshh 189 20 higher high JJR cord-256201-vjzfzshh 189 21 than than IN cord-256201-vjzfzshh 189 22 those those DT cord-256201-vjzfzshh 189 23 reported report VBN cord-256201-vjzfzshh 189 24 previously previously RB cord-256201-vjzfzshh 189 25 in in IN cord-256201-vjzfzshh 189 26 other other JJ cord-256201-vjzfzshh 189 27 viruses virus NNS cord-256201-vjzfzshh 189 28 and and CC cord-256201-vjzfzshh 189 29 in in IN cord-256201-vjzfzshh 189 30 bacteria bacteria NNS cord-256201-vjzfzshh 189 31 and and CC cord-256201-vjzfzshh 189 32 has have VBZ cord-256201-vjzfzshh 189 33 a a DT cord-256201-vjzfzshh 189 34 well well RB cord-256201-vjzfzshh 189 35 - - HYPH cord-256201-vjzfzshh 189 36 defined define VBN cord-256201-vjzfzshh 189 37 molecular molecular JJ cord-256201-vjzfzshh 189 38 basis basis NN cord-256201-vjzfzshh 189 39 . . . cord-256201-vjzfzshh 190 1 Our -PRON- PRP$ cord-256201-vjzfzshh 190 2 results result NNS cord-256201-vjzfzshh 190 3 suggest suggest VBP cord-256201-vjzfzshh 190 4 that that IN cord-256201-vjzfzshh 190 5 the the DT cord-256201-vjzfzshh 190 6 /X174 /X174 NFP cord-256201-vjzfzshh 190 7 mutation mutation NN cord-256201-vjzfzshh 190 8 rate rate NN cord-256201-vjzfzshh 190 9 can can MD cord-256201-vjzfzshh 190 10 be be VB cord-256201-vjzfzshh 190 11 modified modify VBN cord-256201-vjzfzshh 190 12 without without IN cord-256201-vjzfzshh 190 13 significantly significantly RB cord-256201-vjzfzshh 190 14 impacting impact VBG cord-256201-vjzfzshh 190 15 viral viral JJ cord-256201-vjzfzshh 190 16 fitness fitness NN cord-256201-vjzfzshh 190 17 in in IN cord-256201-vjzfzshh 190 18 the the DT cord-256201-vjzfzshh 190 19 short short JJ cord-256201-vjzfzshh 190 20 - - HYPH cord-256201-vjzfzshh 190 21 term term NN cord-256201-vjzfzshh 190 22 , , , cord-256201-vjzfzshh 190 23 therefore therefore RB cord-256201-vjzfzshh 190 24 allowing allow VBG cord-256201-vjzfzshh 190 25 for for IN cord-256201-vjzfzshh 190 26 evolutionary evolutionary JJ cord-256201-vjzfzshh 190 27 optimization optimization NN cord-256201-vjzfzshh 190 28 of of IN cord-256201-vjzfzshh 190 29 the the DT cord-256201-vjzfzshh 190 30 viral viral JJ cord-256201-vjzfzshh 190 31 mutation mutation NN cord-256201-vjzfzshh 190 32 rate rate NN cord-256201-vjzfzshh 190 33 for for IN cord-256201-vjzfzshh 190 34 long long JJ cord-256201-vjzfzshh 190 35 - - HYPH cord-256201-vjzfzshh 190 36 term term NN cord-256201-vjzfzshh 190 37 adaptability adaptability NN cord-256201-vjzfzshh 190 38 . . . cord-256201-vjzfzshh 191 1 However however RB cord-256201-vjzfzshh 191 2 , , , cord-256201-vjzfzshh 191 3 our -PRON- PRP$ cord-256201-vjzfzshh 191 4 results result NNS cord-256201-vjzfzshh 191 5 also also RB cord-256201-vjzfzshh 191 6 revealed reveal VBD cord-256201-vjzfzshh 191 7 constraints constraint NNS cord-256201-vjzfzshh 191 8 limiting limit VBG cord-256201-vjzfzshh 191 9 mutation mutation NN cord-256201-vjzfzshh 191 10 rate rate NN cord-256201-vjzfzshh 191 11 evolution evolution NN cord-256201-vjzfzshh 191 12 , , , cord-256201-vjzfzshh 191 13 since since IN cord-256201-vjzfzshh 191 14 the the DT cord-256201-vjzfzshh 191 15 effects effect NNS cord-256201-vjzfzshh 191 16 of of IN cord-256201-vjzfzshh 191 17 GATC GATC NNP cord-256201-vjzfzshh 191 18 addition addition NN cord-256201-vjzfzshh 191 19 were be VBD cord-256201-vjzfzshh 191 20 lower low JJR cord-256201-vjzfzshh 191 21 than than IN cord-256201-vjzfzshh 191 22 expected expect VBN cord-256201-vjzfzshh 191 23 if if IN cord-256201-vjzfzshh 191 24 MMR MMR NNP cord-256201-vjzfzshh 191 25 were be VBD cord-256201-vjzfzshh 191 26 fully fully RB cord-256201-vjzfzshh 191 27 efficient efficient JJ cord-256201-vjzfzshh 191 28 ( ( -LRB- cord-256201-vjzfzshh 191 29 Fijalkowska Fijalkowska NNP cord-256201-vjzfzshh 191 30 , , , cord-256201-vjzfzshh 191 31 Schaaper Schaaper NNP cord-256201-vjzfzshh 191 32 , , , cord-256201-vjzfzshh 191 33 and and CC cord-256201-vjzfzshh 191 34 Jonczyk Jonczyk NNP cord-256201-vjzfzshh 191 35 2012 2012 CD cord-256201-vjzfzshh 191 36 ) ) -RRB- cord-256201-vjzfzshh 191 37 . . . cord-256201-vjzfzshh 192 1 Illustrating illustrate VBG cord-256201-vjzfzshh 192 2 this this DT cord-256201-vjzfzshh 192 3 , , , cord-256201-vjzfzshh 192 4 the the DT cord-256201-vjzfzshh 192 5 lowest low JJS cord-256201-vjzfzshh 192 6 mutation mutation NN cord-256201-vjzfzshh 192 7 rate rate NN cord-256201-vjzfzshh 192 8 achieved achieve VBN cord-256201-vjzfzshh 192 9 in in IN cord-256201-vjzfzshh 192 10 this this DT cord-256201-vjzfzshh 192 11 study study NN cord-256201-vjzfzshh 192 12 ( ( -LRB- cord-256201-vjzfzshh 192 13 3 3 CD cord-256201-vjzfzshh 192 14 Â â CD cord-256201-vjzfzshh 192 15 10 10 CD cord-256201-vjzfzshh 192 16 -8 -8 NNPS cord-256201-vjzfzshh 192 17 m m NNP cord-256201-vjzfzshh 192 18 / / SYM cord-256201-vjzfzshh 192 19 n n NN cord-256201-vjzfzshh 192 20 / / SYM cord-256201-vjzfzshh 192 21 r r NN cord-256201-vjzfzshh 192 22 ) ) -RRB- cord-256201-vjzfzshh 192 23 was be VBD cord-256201-vjzfzshh 192 24 still still RB cord-256201-vjzfzshh 192 25 two two CD cord-256201-vjzfzshh 192 26 orders order NNS cord-256201-vjzfzshh 192 27 of of IN cord-256201-vjzfzshh 192 28 magnitude magnitude NN cord-256201-vjzfzshh 192 29 higher high JJR cord-256201-vjzfzshh 192 30 than than IN cord-256201-vjzfzshh 192 31 that that DT cord-256201-vjzfzshh 192 32 of of IN cord-256201-vjzfzshh 192 33 E. E. NNP cord-256201-vjzfzshh 192 34 coli coli NNS cord-256201-vjzfzshh 192 35 ( ( -LRB- cord-256201-vjzfzshh 192 36 Drake Drake NNP cord-256201-vjzfzshh 192 37 1991 1991 CD cord-256201-vjzfzshh 192 38 ; ; : cord-256201-vjzfzshh 192 39 Drake Drake NNP cord-256201-vjzfzshh 192 40 et et NNP cord-256201-vjzfzshh 192 41 al al NNP cord-256201-vjzfzshh 192 42 . . . cord-256201-vjzfzshh 193 1 1998 1998 CD cord-256201-vjzfzshh 193 2 ; ; : cord-256201-vjzfzshh 193 3 Lee Lee NNP cord-256201-vjzfzshh 193 4 et et NNP cord-256201-vjzfzshh 193 5 al al NNP cord-256201-vjzfzshh 193 6 . . . cord-256201-vjzfzshh 193 7 2012 2012 CD cord-256201-vjzfzshh 193 8 ) ) -RRB- cord-256201-vjzfzshh 193 9 . . . cord-256201-vjzfzshh 194 1 Our -PRON- PRP$ cord-256201-vjzfzshh 194 2 results result NNS cord-256201-vjzfzshh 194 3 suggest suggest VBP cord-256201-vjzfzshh 194 4 that that IN cord-256201-vjzfzshh 194 5 inefficient inefficient JJ cord-256201-vjzfzshh 194 6 MMR MMR NNP cord-256201-vjzfzshh 194 7 in in IN cord-256201-vjzfzshh 194 8 /X174 /X174 , cord-256201-vjzfzshh 194 9 is be VBZ cord-256201-vjzfzshh 194 10 at at IN cord-256201-vjzfzshh 194 11 least least JJS cord-256201-vjzfzshh 194 12 in in IN cord-256201-vjzfzshh 194 13 part part NN cord-256201-vjzfzshh 194 14 due due IN cord-256201-vjzfzshh 194 15 to to IN cord-256201-vjzfzshh 194 16 the the DT cord-256201-vjzfzshh 194 17 fact fact NN cord-256201-vjzfzshh 194 18 that that IN cord-256201-vjzfzshh 194 19 phage phage NN cord-256201-vjzfzshh 194 20 DNA dna NN cord-256201-vjzfzshh 194 21 is be VBZ cord-256201-vjzfzshh 194 22 under under RB cord-256201-vjzfzshh 194 23 - - HYPH cord-256201-vjzfzshh 194 24 methylated methylated JJ cord-256201-vjzfzshh 194 25 . . . cord-256201-vjzfzshh 195 1 Full full JJ cord-256201-vjzfzshh 195 2 methylation methylation NN cord-256201-vjzfzshh 195 3 may may MD cord-256201-vjzfzshh 195 4 be be VB cord-256201-vjzfzshh 195 5 impeded impede VBN cord-256201-vjzfzshh 195 6 by by IN cord-256201-vjzfzshh 195 7 the the DT cord-256201-vjzfzshh 195 8 fast fast JJ cord-256201-vjzfzshh 195 9 replication replication NN cord-256201-vjzfzshh 195 10 of of IN cord-256201-vjzfzshh 195 11 the the DT cord-256201-vjzfzshh 195 12 phage phage NN cord-256201-vjzfzshh 195 13 and and CC cord-256201-vjzfzshh 195 14 the the DT cord-256201-vjzfzshh 195 15 transient transient JJ cord-256201-vjzfzshh 195 16 nature nature NN cord-256201-vjzfzshh 195 17 of of IN cord-256201-vjzfzshh 195 18 the the DT cord-256201-vjzfzshh 195 19 dsDNA dsdna RB cord-256201-vjzfzshh 195 20 replicative replicative JJ cord-256201-vjzfzshh 195 21 form form NN cord-256201-vjzfzshh 195 22 . . . cord-256201-vjzfzshh 196 1 Cellular cellular JJ cord-256201-vjzfzshh 196 2 Dam Dam NNP cord-256201-vjzfzshh 196 3 methylase methylase NN cord-256201-vjzfzshh 196 4 levels level NNS cord-256201-vjzfzshh 196 5 must must MD cord-256201-vjzfzshh 196 6 be be VB cord-256201-vjzfzshh 196 7 tightly tightly RB cord-256201-vjzfzshh 196 8 regulated regulate VBN cord-256201-vjzfzshh 196 9 , , , cord-256201-vjzfzshh 196 10 because because IN cord-256201-vjzfzshh 196 11 hypo hypo NN cord-256201-vjzfzshh 196 12 - - : cord-256201-vjzfzshh 196 13 and and CC cord-256201-vjzfzshh 196 14 hypermethylation hypermethylation NN cord-256201-vjzfzshh 196 15 can can MD cord-256201-vjzfzshh 196 16 compromise compromise VB cord-256201-vjzfzshh 196 17 the the DT cord-256201-vjzfzshh 196 18 ability ability NN cord-256201-vjzfzshh 196 19 of of IN cord-256201-vjzfzshh 196 20 the the DT cord-256201-vjzfzshh 196 21 MMR MMR NNP cord-256201-vjzfzshh 196 22 system system NN cord-256201-vjzfzshh 196 23 to to TO cord-256201-vjzfzshh 196 24 distinguish distinguish VB cord-256201-vjzfzshh 196 25 between between IN cord-256201-vjzfzshh 196 26 the the DT cord-256201-vjzfzshh 196 27 parental parental JJ cord-256201-vjzfzshh 196 28 and and CC cord-256201-vjzfzshh 196 29 daughter daughter NN cord-256201-vjzfzshh 196 30 DNA dna NN cord-256201-vjzfzshh 196 31 strands strand NNS cord-256201-vjzfzshh 196 32 . . . cord-256201-vjzfzshh 197 1 Showing show VBG cord-256201-vjzfzshh 197 2 this this DT cord-256201-vjzfzshh 197 3 , , , cord-256201-vjzfzshh 197 4 both both DT cord-256201-vjzfzshh 197 5 Dam Dam NNP cord-256201-vjzfzshh 197 6 deficiency deficiency NN cord-256201-vjzfzshh 197 7 ( ( -LRB- cord-256201-vjzfzshh 197 8 Bale Bale NNP cord-256201-vjzfzshh 197 9 , , , cord-256201-vjzfzshh 197 10 d'Alarcao d'Alarcao NNP cord-256201-vjzfzshh 197 11 , , , cord-256201-vjzfzshh 197 12 and and CC cord-256201-vjzfzshh 197 13 Marinus Marinus NNP cord-256201-vjzfzshh 197 14 1979 1979 CD cord-256201-vjzfzshh 197 15 ; ; : cord-256201-vjzfzshh 197 16 Marinus Marinus NNP cord-256201-vjzfzshh 197 17 2010 2010 CD cord-256201-vjzfzshh 197 18 ) ) -RRB- cord-256201-vjzfzshh 197 19 and and CC cord-256201-vjzfzshh 197 20 overexpression overexpression NN cord-256201-vjzfzshh 197 21 ( ( -LRB- cord-256201-vjzfzshh 197 22 Pukkila Pukkila NNP cord-256201-vjzfzshh 197 23 et et FW cord-256201-vjzfzshh 197 24 al al NNP cord-256201-vjzfzshh 197 25 . . NNP cord-256201-vjzfzshh 197 26 1983 1983 CD cord-256201-vjzfzshh 197 27 ; ; : cord-256201-vjzfzshh 197 28 McClelland McClelland NNP cord-256201-vjzfzshh 197 29 1984 1984 CD cord-256201-vjzfzshh 197 30 ) ) -RRB- cord-256201-vjzfzshh 197 31 have have VBP cord-256201-vjzfzshh 197 32 been be VBN cord-256201-vjzfzshh 197 33 found find VBN cord-256201-vjzfzshh 197 34 to to TO cord-256201-vjzfzshh 197 35 produce produce VB cord-256201-vjzfzshh 197 36 mutator mutator NN cord-256201-vjzfzshh 197 37 phenotypes phenotype NNS cord-256201-vjzfzshh 197 38 in in IN cord-256201-vjzfzshh 197 39 E. E. NNP cord-256201-vjzfzshh 197 40 coli coli NNS cord-256201-vjzfzshh 197 41 . . . cord-256201-vjzfzshh 198 1 It -PRON- PRP cord-256201-vjzfzshh 198 2 is be VBZ cord-256201-vjzfzshh 198 3 possible possible JJ cord-256201-vjzfzshh 198 4 that that IN cord-256201-vjzfzshh 198 5 Dam dam JJ cord-256201-vjzfzshh 198 6 methylation methylation NN cord-256201-vjzfzshh 198 7 levels level NNS cord-256201-vjzfzshh 198 8 which which WDT cord-256201-vjzfzshh 198 9 are be VBP cord-256201-vjzfzshh 198 10 optimal optimal JJ cord-256201-vjzfzshh 198 11 for for IN cord-256201-vjzfzshh 198 12 the the DT cord-256201-vjzfzshh 198 13 host host NN cord-256201-vjzfzshh 198 14 are be VBP cord-256201-vjzfzshh 198 15 too too RB cord-256201-vjzfzshh 198 16 low low JJ cord-256201-vjzfzshh 198 17 for for IN cord-256201-vjzfzshh 198 18 the the DT cord-256201-vjzfzshh 198 19 phage phage NN cord-256201-vjzfzshh 198 20 , , , cord-256201-vjzfzshh 198 21 due due IN cord-256201-vjzfzshh 198 22 to to IN cord-256201-vjzfzshh 198 23 its -PRON- PRP$ cord-256201-vjzfzshh 198 24 fastest fast JJS cord-256201-vjzfzshh 198 25 replication replication NN cord-256201-vjzfzshh 198 26 . . . cord-256201-vjzfzshh 199 1 This this DT cord-256201-vjzfzshh 199 2 could could MD cord-256201-vjzfzshh 199 3 be be VB cord-256201-vjzfzshh 199 4 tested test VBN cord-256201-vjzfzshh 199 5 in in IN cord-256201-vjzfzshh 199 6 future future JJ cord-256201-vjzfzshh 199 7 work work NN cord-256201-vjzfzshh 199 8 by by IN cord-256201-vjzfzshh 199 9 infecting infect VBG cord-256201-vjzfzshh 199 10 Dam Dam NNP cord-256201-vjzfzshh 199 11 - - HYPH cord-256201-vjzfzshh 199 12 overexpressing overexpresse VBG cord-256201-vjzfzshh 199 13 E. E. NNP cord-256201-vjzfzshh 199 14 coli coli NNS cord-256201-vjzfzshh 199 15 C c NN cord-256201-vjzfzshh 199 16 mutants mutant NNS cord-256201-vjzfzshh 199 17 with with IN cord-256201-vjzfzshh 199 18 the the DT cord-256201-vjzfzshh 199 19 20GATC 20gatc CD cord-256201-vjzfzshh 199 20 phage phage NN cord-256201-vjzfzshh 199 21 and and CC cord-256201-vjzfzshh 199 22 determining determine VBG cord-256201-vjzfzshh 199 23 phage phage NN cord-256201-vjzfzshh 199 24 DNA dna NN cord-256201-vjzfzshh 199 25 methylation methylation NN cord-256201-vjzfzshh 199 26 levels level NNS cord-256201-vjzfzshh 199 27 and and CC cord-256201-vjzfzshh 199 28 mutation mutation NN cord-256201-vjzfzshh 199 29 rates rate NNS cord-256201-vjzfzshh 199 30 . . . cord-256201-vjzfzshh 200 1 Assuming assume VBG cord-256201-vjzfzshh 200 2 that that IN cord-256201-vjzfzshh 200 3 the the DT cord-256201-vjzfzshh 200 4 MMR MMR NNP cord-256201-vjzfzshh 200 5 system system NN cord-256201-vjzfzshh 200 6 can can MD cord-256201-vjzfzshh 200 7 use use VB cord-256201-vjzfzshh 200 8 GATC GATC NNP cord-256201-vjzfzshh 200 9 sites site NNS cord-256201-vjzfzshh 200 10 at at IN cord-256201-vjzfzshh 200 11 a a DT cord-256201-vjzfzshh 200 12 distance distance NN cord-256201-vjzfzshh 200 13 of of IN cord-256201-vjzfzshh 200 14 up up IN cord-256201-vjzfzshh 200 15 to to TO cord-256201-vjzfzshh 200 16 1 1 CD cord-256201-vjzfzshh 200 17 kb kb NNS cord-256201-vjzfzshh 200 18 from from IN cord-256201-vjzfzshh 200 19 the the DT cord-256201-vjzfzshh 200 20 mismatch mismatch NN cord-256201-vjzfzshh 200 21 , , , cord-256201-vjzfzshh 200 22 for for IN cord-256201-vjzfzshh 200 23 a a DT cord-256201-vjzfzshh 200 24 DNA dna NN cord-256201-vjzfzshh 200 25 showing show VBG cord-256201-vjzfzshh 200 26 the the DT cord-256201-vjzfzshh 200 27 randomly randomly RB cord-256201-vjzfzshh 200 28 expected expect VBN cord-256201-vjzfzshh 200 29 density density NN cord-256201-vjzfzshh 200 30 of of IN cord-256201-vjzfzshh 200 31 GATCs GATCs NNP cord-256201-vjzfzshh 200 32 , , , cord-256201-vjzfzshh 200 33 there there EX cord-256201-vjzfzshh 200 34 should should MD cord-256201-vjzfzshh 200 35 be be VB cord-256201-vjzfzshh 200 36 approximately approximately RB cord-256201-vjzfzshh 200 37 four four CD cord-256201-vjzfzshh 200 38 such such JJ cord-256201-vjzfzshh 200 39 sites site NNS cord-256201-vjzfzshh 200 40 available available JJ cord-256201-vjzfzshh 200 41 for for IN cord-256201-vjzfzshh 200 42 each each DT cord-256201-vjzfzshh 200 43 mismatch mismatch NN cord-256201-vjzfzshh 200 44 . . . cord-256201-vjzfzshh 201 1 For for IN cord-256201-vjzfzshh 201 2 a a DT cord-256201-vjzfzshh 201 3 50 50 CD cord-256201-vjzfzshh 201 4 per per IN cord-256201-vjzfzshh 201 5 cent cent NN cord-256201-vjzfzshh 201 6 methylation methylation NN cord-256201-vjzfzshh 201 7 efficiency efficiency NN cord-256201-vjzfzshh 201 8 , , , cord-256201-vjzfzshh 201 9 the the DT cord-256201-vjzfzshh 201 10 fraction fraction NN cord-256201-vjzfzshh 201 11 of of IN cord-256201-vjzfzshh 201 12 non non JJ cord-256201-vjzfzshh 201 13 - - JJ cord-256201-vjzfzshh 201 14 reparable reparable JJ cord-256201-vjzfzshh 201 15 mismatches mismatch NNS cord-256201-vjzfzshh 201 16 would would MD cord-256201-vjzfzshh 201 17 thus thus RB cord-256201-vjzfzshh 201 18 be be VB cord-256201-vjzfzshh 201 19 on on IN cord-256201-vjzfzshh 201 20 the the DT cord-256201-vjzfzshh 201 21 order order NN cord-256201-vjzfzshh 201 22 of of IN cord-256201-vjzfzshh 201 23 0.5 0.5 CD cord-256201-vjzfzshh 201 24 4 4 CD cord-256201-vjzfzshh 201 25 ¼ ¼ CD cord-256201-vjzfzshh 201 26 0.06 0.06 CD cord-256201-vjzfzshh 201 27 , , , cord-256201-vjzfzshh 201 28 implying imply VBG cord-256201-vjzfzshh 201 29 that that IN cord-256201-vjzfzshh 201 30 the the DT cord-256201-vjzfzshh 201 31 maximum maximum JJ cord-256201-vjzfzshh 201 32 mutation mutation NN cord-256201-vjzfzshh 201 33 rate rate NN cord-256201-vjzfzshh 201 34 reduction reduction NN cord-256201-vjzfzshh 201 35 achievable achievable JJ cord-256201-vjzfzshh 201 36 by by IN cord-256201-vjzfzshh 201 37 MMR MMR NNP cord-256201-vjzfzshh 201 38 for for IN cord-256201-vjzfzshh 201 39 this this DT cord-256201-vjzfzshh 201 40 methylation methylation NN cord-256201-vjzfzshh 201 41 efficiency efficiency NN cord-256201-vjzfzshh 201 42 would would MD cord-256201-vjzfzshh 201 43 be be VB cord-256201-vjzfzshh 201 44 1/0.06 1/0.06 NNP cord-256201-vjzfzshh 201 45 ¼ ¼ NNP cord-256201-vjzfzshh 201 46 seventeenfold seventeenfold NN cord-256201-vjzfzshh 201 47 . . . cord-256201-vjzfzshh 202 1 Incomplete incomplete JJ cord-256201-vjzfzshh 202 2 GATC GATC NNP cord-256201-vjzfzshh 202 3 methylation methylation NN cord-256201-vjzfzshh 202 4 can can MD cord-256201-vjzfzshh 202 5 hence hence RB cord-256201-vjzfzshh 202 6 account account VB cord-256201-vjzfzshh 202 7 for for IN cord-256201-vjzfzshh 202 8 the the DT cord-256201-vjzfzshh 202 9 relatively relatively RB cord-256201-vjzfzshh 202 10 limited limited JJ cord-256201-vjzfzshh 202 11 efficacy efficacy NN cord-256201-vjzfzshh 202 12 of of IN cord-256201-vjzfzshh 202 13 MMR MMR NNP cord-256201-vjzfzshh 202 14 in in IN cord-256201-vjzfzshh 202 15 /X174 /X174 NFP cord-256201-vjzfzshh 202 16 . . . cord-256201-vjzfzshh 203 1 We -PRON- PRP cord-256201-vjzfzshh 203 2 note note VBP cord-256201-vjzfzshh 203 3 that that IN cord-256201-vjzfzshh 203 4 the the DT cord-256201-vjzfzshh 203 5 fiftyfold fiftyfold JJ cord-256201-vjzfzshh 203 6 mutation mutation NN cord-256201-vjzfzshh 203 7 rate rate NN cord-256201-vjzfzshh 203 8 reduction reduction NN cord-256201-vjzfzshh 203 9 observed observe VBN cord-256201-vjzfzshh 203 10 for for IN cord-256201-vjzfzshh 203 11 the the DT cord-256201-vjzfzshh 203 12 4iGATC 4igatc CD cord-256201-vjzfzshh 203 13 virus virus NN cord-256201-vjzfzshh 203 14 could could MD cord-256201-vjzfzshh 203 15 be be VB cord-256201-vjzfzshh 203 16 achieved achieve VBN cord-256201-vjzfzshh 203 17 with with IN cord-256201-vjzfzshh 203 18 63 63 CD cord-256201-vjzfzshh 203 19 per per IN cord-256201-vjzfzshh 203 20 cent cent NN cord-256201-vjzfzshh 203 21 methylation methylation NN cord-256201-vjzfzshh 203 22 , , , cord-256201-vjzfzshh 203 23 a a DT cord-256201-vjzfzshh 203 24 value value NN cord-256201-vjzfzshh 203 25 experimentally experimentally RB cord-256201-vjzfzshh 203 26 undistinguishable undistinguishable JJ cord-256201-vjzfzshh 203 27 from from IN cord-256201-vjzfzshh 203 28 the the DT cord-256201-vjzfzshh 203 29 50 50 CD cord-256201-vjzfzshh 203 30 per per NN cord-256201-vjzfzshh 203 31 cent cent NN cord-256201-vjzfzshh 203 32 assumed assume VBN cord-256201-vjzfzshh 203 33 above above IN cord-256201-vjzfzshh 203 34 given give VBN cord-256201-vjzfzshh 203 35 that that IN cord-256201-vjzfzshh 203 36 we -PRON- PRP cord-256201-vjzfzshh 203 37 could could MD cord-256201-vjzfzshh 203 38 not not RB cord-256201-vjzfzshh 203 39 finely finely RB cord-256201-vjzfzshh 203 40 quantify quantify VB cord-256201-vjzfzshh 203 41 the the DT cord-256201-vjzfzshh 203 42 fraction fraction NN cord-256201-vjzfzshh 203 43 of of IN cord-256201-vjzfzshh 203 44 methylated methylated JJ cord-256201-vjzfzshh 203 45 DNA dna NN cord-256201-vjzfzshh 203 46 . . . cord-256201-vjzfzshh 204 1 However however RB cord-256201-vjzfzshh 204 2 , , , cord-256201-vjzfzshh 204 3 for for IN cord-256201-vjzfzshh 204 4 some some DT cord-256201-vjzfzshh 204 5 GATCs GATCs NNPS cord-256201-vjzfzshh 204 6 , , , cord-256201-vjzfzshh 204 7 the the DT cord-256201-vjzfzshh 204 8 efficacy efficacy NN cord-256201-vjzfzshh 204 9 of of IN cord-256201-vjzfzshh 204 10 MMR MMR NNP cord-256201-vjzfzshh 204 11 was be VBD cord-256201-vjzfzshh 204 12 clearly clearly RB cord-256201-vjzfzshh 204 13 below below IN cord-256201-vjzfzshh 204 14 the the DT cord-256201-vjzfzshh 204 15 upper upper JJ cord-256201-vjzfzshh 204 16 - - HYPH cord-256201-vjzfzshh 204 17 limit limit NN cord-256201-vjzfzshh 204 18 imposed impose VBN cord-256201-vjzfzshh 204 19 by by IN cord-256201-vjzfzshh 204 20 under under NN cord-256201-vjzfzshh 204 21 - - HYPH cord-256201-vjzfzshh 204 22 methylation methylation NN cord-256201-vjzfzshh 204 23 , , , cord-256201-vjzfzshh 204 24 since since IN cord-256201-vjzfzshh 204 25 the the DT cord-256201-vjzfzshh 204 26 4GATC 4gatc CD cord-256201-vjzfzshh 204 27 and and CC cord-256201-vjzfzshh 204 28 A3940G A3940G NNP cord-256201-vjzfzshh 204 29 / / SYM cord-256201-vjzfzshh 204 30 T3943C T3943C NNP cord-256201-vjzfzshh 204 31 viruses virus NNS cord-256201-vjzfzshh 204 32 showed show VBD cord-256201-vjzfzshh 204 33 no no DT cord-256201-vjzfzshh 204 34 change change NN cord-256201-vjzfzshh 204 35 in in IN cord-256201-vjzfzshh 204 36 mutation mutation NN cord-256201-vjzfzshh 204 37 rate rate NN cord-256201-vjzfzshh 204 38 at at RB cord-256201-vjzfzshh 204 39 all all RB cord-256201-vjzfzshh 204 40 . . . cord-256201-vjzfzshh 205 1 Our -PRON- PRP$ cord-256201-vjzfzshh 205 2 results result NNS cord-256201-vjzfzshh 205 3 indicate indicate VBP cord-256201-vjzfzshh 205 4 that that IN cord-256201-vjzfzshh 205 5 intergenic intergenic JJ cord-256201-vjzfzshh 205 6 GATCs GATCs NNPS cord-256201-vjzfzshh 205 7 tended tend VBD cord-256201-vjzfzshh 205 8 to to TO cord-256201-vjzfzshh 205 9 have have VB cord-256201-vjzfzshh 205 10 stronger strong JJR cord-256201-vjzfzshh 205 11 effects effect NNS cord-256201-vjzfzshh 205 12 than than IN cord-256201-vjzfzshh 205 13 those those DT cord-256201-vjzfzshh 205 14 located locate VBN cord-256201-vjzfzshh 205 15 in in IN cord-256201-vjzfzshh 205 16 protein- protein- JJ cord-256201-vjzfzshh 205 17 Table table NN cord-256201-vjzfzshh 205 18 2 2 CD cord-256201-vjzfzshh 205 19 for for IN cord-256201-vjzfzshh 205 20 details detail NNS cord-256201-vjzfzshh 205 21 . . . cord-256201-vjzfzshh 206 1 coding code VBG cord-256201-vjzfzshh 206 2 regions region NNS cord-256201-vjzfzshh 206 3 , , , cord-256201-vjzfzshh 206 4 suggesting suggest VBG cord-256201-vjzfzshh 206 5 other other JJ cord-256201-vjzfzshh 206 6 factors factor NNS cord-256201-vjzfzshh 206 7 curtailing curtail VBG cord-256201-vjzfzshh 206 8 MMR MMR NNP cord-256201-vjzfzshh 206 9 efficiency efficiency NN cord-256201-vjzfzshh 206 10 such such JJ cord-256201-vjzfzshh 206 11 as as IN cord-256201-vjzfzshh 206 12 steric steric JJ cord-256201-vjzfzshh 206 13 availability availability NN cord-256201-vjzfzshh 206 14 to to IN cord-256201-vjzfzshh 206 15 MutH. MutH. . cord-256201-vjzfzshh 207 1 As as IN cord-256201-vjzfzshh 207 2 we -PRON- PRP cord-256201-vjzfzshh 207 3 have have VBP cord-256201-vjzfzshh 207 4 shown show VBN cord-256201-vjzfzshh 207 5 , , , cord-256201-vjzfzshh 207 6 though though RB cord-256201-vjzfzshh 207 7 , , , cord-256201-vjzfzshh 207 8 even even RB cord-256201-vjzfzshh 207 9 two two CD cord-256201-vjzfzshh 207 10 extremely extremely RB cord-256201-vjzfzshh 207 11 close close JJ cord-256201-vjzfzshh 207 12 GATCs gatc NNS cord-256201-vjzfzshh 207 13 can can MD cord-256201-vjzfzshh 207 14 have have VB cord-256201-vjzfzshh 207 15 very very RB cord-256201-vjzfzshh 207 16 different different JJ cord-256201-vjzfzshh 207 17 effects effect NNS cord-256201-vjzfzshh 207 18 on on IN cord-256201-vjzfzshh 207 19 mutation mutation NN cord-256201-vjzfzshh 207 20 rate rate NN cord-256201-vjzfzshh 207 21 , , , cord-256201-vjzfzshh 207 22 and and CC cord-256201-vjzfzshh 207 23 we -PRON- PRP cord-256201-vjzfzshh 207 24 lack lack VBP cord-256201-vjzfzshh 207 25 a a DT cord-256201-vjzfzshh 207 26 model model NN cord-256201-vjzfzshh 207 27 for for IN cord-256201-vjzfzshh 207 28 explaining explain VBG cord-256201-vjzfzshh 207 29 these these DT cord-256201-vjzfzshh 207 30 differences difference NNS cord-256201-vjzfzshh 207 31 . . . cord-256201-vjzfzshh 208 1 The the DT cord-256201-vjzfzshh 208 2 region region NN cord-256201-vjzfzshh 208 3 in in IN cord-256201-vjzfzshh 208 4 which which WDT cord-256201-vjzfzshh 208 5 the the DT cord-256201-vjzfzshh 208 6 single single JJ cord-256201-vjzfzshh 208 7 intergenic intergenic JJ cord-256201-vjzfzshh 208 8 GATCs GATCs NNPS cord-256201-vjzfzshh 208 9 were be VBD cord-256201-vjzfzshh 208 10 placed place VBN cord-256201-vjzfzshh 208 11 contains contain VBZ cord-256201-vjzfzshh 208 12 the the DT cord-256201-vjzfzshh 208 13 A A NNP cord-256201-vjzfzshh 208 14 promoter promoter NN cord-256201-vjzfzshh 208 15 and and CC cord-256201-vjzfzshh 208 16 the the DT cord-256201-vjzfzshh 208 17 H H NNP cord-256201-vjzfzshh 208 18 terminator terminator NN cord-256201-vjzfzshh 208 19 . . . cord-256201-vjzfzshh 209 1 The the DT cord-256201-vjzfzshh 209 2 C3934G C3934G NNP cord-256201-vjzfzshh 209 3 / / SYM cord-256201-vjzfzshh 209 4 C3935A C3935A NNP cord-256201-vjzfzshh 209 5 substitution substitution NN cord-256201-vjzfzshh 209 6 , , , cord-256201-vjzfzshh 209 7 which which WDT cord-256201-vjzfzshh 209 8 had have VBD cord-256201-vjzfzshh 209 9 the the DT cord-256201-vjzfzshh 209 10 strongest strong JJS cord-256201-vjzfzshh 209 11 effect effect NN cord-256201-vjzfzshh 209 12 on on IN cord-256201-vjzfzshh 209 13 mutation mutation NN cord-256201-vjzfzshh 209 14 rate rate NN cord-256201-vjzfzshh 209 15 , , , cord-256201-vjzfzshh 209 16 was be VBD cord-256201-vjzfzshh 209 17 located locate VBN cord-256201-vjzfzshh 209 18 farthest farthest RBS cord-256201-vjzfzshh 209 19 away away RB cord-256201-vjzfzshh 209 20 from from IN cord-256201-vjzfzshh 209 21 the the DT cord-256201-vjzfzshh 209 22 A A NNP cord-256201-vjzfzshh 209 23 promoter promoter NN cord-256201-vjzfzshh 209 24 . . . cord-256201-vjzfzshh 210 1 We -PRON- PRP cord-256201-vjzfzshh 210 2 can can MD cord-256201-vjzfzshh 210 3 speculate speculate VB cord-256201-vjzfzshh 210 4 that that IN cord-256201-vjzfzshh 210 5 , , , cord-256201-vjzfzshh 210 6 if if IN cord-256201-vjzfzshh 210 7 steric steric JJ cord-256201-vjzfzshh 210 8 availability availability NN cord-256201-vjzfzshh 210 9 of of IN cord-256201-vjzfzshh 210 10 the the DT cord-256201-vjzfzshh 210 11 GATC GATC NNP cord-256201-vjzfzshh 210 12 motif motif NN cord-256201-vjzfzshh 210 13 to to IN cord-256201-vjzfzshh 210 14 MutH MutH NNP cord-256201-vjzfzshh 210 15 was be VBD cord-256201-vjzfzshh 210 16 limited limit VBN cord-256201-vjzfzshh 210 17 by by IN cord-256201-vjzfzshh 210 18 the the DT cord-256201-vjzfzshh 210 19 transcription transcription NN cord-256201-vjzfzshh 210 20 machinery machinery NN cord-256201-vjzfzshh 210 21 , , , cord-256201-vjzfzshh 210 22 a a DT cord-256201-vjzfzshh 210 23 more more RBR cord-256201-vjzfzshh 210 24 distal distal JJ cord-256201-vjzfzshh 210 25 positioning positioning NN cord-256201-vjzfzshh 210 26 from from IN cord-256201-vjzfzshh 210 27 actively actively RB cord-256201-vjzfzshh 210 28 transcribed transcribe VBN cord-256201-vjzfzshh 210 29 regions region NNS cord-256201-vjzfzshh 210 30 may may MD cord-256201-vjzfzshh 210 31 allow allow VB cord-256201-vjzfzshh 210 32 for for IN cord-256201-vjzfzshh 210 33 more more RBR cord-256201-vjzfzshh 210 34 efficient efficient JJ cord-256201-vjzfzshh 210 35 MMR MMR NNP cord-256201-vjzfzshh 210 36 . . . cord-256201-vjzfzshh 211 1 However however RB cord-256201-vjzfzshh 211 2 , , , cord-256201-vjzfzshh 211 3 the the DT cord-256201-vjzfzshh 211 4 A3963 A3963 NNP cord-256201-vjzfzshh 211 5 G G NNP cord-256201-vjzfzshh 211 6 and and CC cord-256201-vjzfzshh 211 7 A3940G A3940G NNP cord-256201-vjzfzshh 211 8 / / SYM cord-256201-vjzfzshh 211 9 T3943C T3943C NNP cord-256201-vjzfzshh 211 10 substitutions substitution NNS cord-256201-vjzfzshh 211 11 were be VBD cord-256201-vjzfzshh 211 12 located locate VBN cord-256201-vjzfzshh 211 13 approximately approximately RB cord-256201-vjzfzshh 211 14 at at IN cord-256201-vjzfzshh 211 15 the the DT cord-256201-vjzfzshh 211 16 same same JJ cord-256201-vjzfzshh 211 17 distance distance NN cord-256201-vjzfzshh 211 18 of of IN cord-256201-vjzfzshh 211 19 the the DT cord-256201-vjzfzshh 211 20 A A NNP cord-256201-vjzfzshh 211 21 promoter promoter NN cord-256201-vjzfzshh 211 22 . . . cord-256201-vjzfzshh 212 1 A3940 A3940 NNP cord-256201-vjzfzshh 212 2 G g NN cord-256201-vjzfzshh 213 1 /T3943C /T3943C NNP cord-256201-vjzfzshh 213 2 was be VBD cord-256201-vjzfzshh 213 3 upstream upstream JJ cord-256201-vjzfzshh 213 4 of of IN cord-256201-vjzfzshh 213 5 the the DT cord-256201-vjzfzshh 213 6 promoter promoter NN cord-256201-vjzfzshh 213 7 , , , cord-256201-vjzfzshh 213 8 whereas whereas IN cord-256201-vjzfzshh 213 9 A3963 A3963 NNP cord-256201-vjzfzshh 213 10 G G NNP cord-256201-vjzfzshh 213 11 was be VBD cord-256201-vjzfzshh 213 12 downstream downstream JJ cord-256201-vjzfzshh 213 13 of of IN cord-256201-vjzfzshh 213 14 the the DT cord-256201-vjzfzshh 213 15 promoter promoter NN cord-256201-vjzfzshh 213 16 and and CC cord-256201-vjzfzshh 213 17 in in IN cord-256201-vjzfzshh 213 18 a a DT cord-256201-vjzfzshh 213 19 palindromic palindromic JJ cord-256201-vjzfzshh 213 20 region region NN cord-256201-vjzfzshh 213 21 with with IN cord-256201-vjzfzshh 213 22 a a DT cord-256201-vjzfzshh 213 23 relative relative JJ cord-256201-vjzfzshh 213 24 high high JJ cord-256201-vjzfzshh 213 25 GþC gþc NN cord-256201-vjzfzshh 213 26 content content NN cord-256201-vjzfzshh 213 27 . . . cord-256201-vjzfzshh 214 1 As as IN cord-256201-vjzfzshh 214 2 suggested suggest VBN cord-256201-vjzfzshh 214 3 previously previously RB cord-256201-vjzfzshh 214 4 , , , cord-256201-vjzfzshh 214 5 mismatch mismatch NN cord-256201-vjzfzshh 214 6 recognition recognition NN cord-256201-vjzfzshh 214 7 may may MD cord-256201-vjzfzshh 214 8 depend depend VB cord-256201-vjzfzshh 214 9 also also RB cord-256201-vjzfzshh 214 10 on on IN cord-256201-vjzfzshh 214 11 sequence sequence NN cord-256201-vjzfzshh 214 12 context context NN cord-256201-vjzfzshh 214 13 , , , cord-256201-vjzfzshh 214 14 increasing increase VBG cord-256201-vjzfzshh 214 15 its -PRON- PRP$ cord-256201-vjzfzshh 214 16 efficiency efficiency NN cord-256201-vjzfzshh 214 17 in in IN cord-256201-vjzfzshh 214 18 regions region NNS cord-256201-vjzfzshh 214 19 with with IN cord-256201-vjzfzshh 214 20 higher high JJR cord-256201-vjzfzshh 214 21 GC GC NNP cord-256201-vjzfzshh 214 22 content content NN cord-256201-vjzfzshh 214 23 ( ( -LRB- cord-256201-vjzfzshh 214 24 Jones Jones NNP cord-256201-vjzfzshh 214 25 , , , cord-256201-vjzfzshh 214 26 Wagner Wagner NNP cord-256201-vjzfzshh 214 27 , , , cord-256201-vjzfzshh 214 28 and and CC cord-256201-vjzfzshh 214 29 Radman Radman NNP cord-256201-vjzfzshh 214 30 1987 1987 CD cord-256201-vjzfzshh 214 31 ) ) -RRB- cord-256201-vjzfzshh 214 32 . . . cord-256201-vjzfzshh 215 1 Therefore therefore RB cord-256201-vjzfzshh 215 2 , , , cord-256201-vjzfzshh 215 3 our -PRON- PRP$ cord-256201-vjzfzshh 215 4 results result NNS cord-256201-vjzfzshh 215 5 suggest suggest VBP cord-256201-vjzfzshh 215 6 that that IN cord-256201-vjzfzshh 215 7 evolutionary evolutionary JJ cord-256201-vjzfzshh 215 8 optimization optimization NN cord-256201-vjzfzshh 215 9 of of IN cord-256201-vjzfzshh 215 10 the the DT cord-256201-vjzfzshh 215 11 mutation mutation NN cord-256201-vjzfzshh 215 12 rate rate NN cord-256201-vjzfzshh 215 13 may may MD cord-256201-vjzfzshh 215 14 not not RB cord-256201-vjzfzshh 215 15 be be VB cord-256201-vjzfzshh 215 16 the the DT cord-256201-vjzfzshh 215 17 sole sole JJ cord-256201-vjzfzshh 215 18 factor factor NN cord-256201-vjzfzshh 215 19 driving drive VBG cord-256201-vjzfzshh 215 20 GATC GATC NNP cord-256201-vjzfzshh 215 21 avoidance avoidance NN cord-256201-vjzfzshh 215 22 in in IN cord-256201-vjzfzshh 215 23 /X174 /X174 , cord-256201-vjzfzshh 215 24 or or CC cord-256201-vjzfzshh 215 25 other other JJ cord-256201-vjzfzshh 215 26 enterobacteriophages enterobacteriophage NNS cord-256201-vjzfzshh 215 27 , , , cord-256201-vjzfzshh 215 28 since since IN cord-256201-vjzfzshh 215 29 we -PRON- PRP cord-256201-vjzfzshh 215 30 found find VBD cord-256201-vjzfzshh 215 31 that that IN cord-256201-vjzfzshh 215 32 some some DT cord-256201-vjzfzshh 215 33 GATCs GATCs NNPS cord-256201-vjzfzshh 215 34 had have VBD cord-256201-vjzfzshh 215 35 no no DT cord-256201-vjzfzshh 215 36 effect effect NN cord-256201-vjzfzshh 215 37 on on IN cord-256201-vjzfzshh 215 38 the the DT cord-256201-vjzfzshh 215 39 viral viral JJ cord-256201-vjzfzshh 215 40 mutation mutation NN cord-256201-vjzfzshh 215 41 rate rate NN cord-256201-vjzfzshh 215 42 yet yet CC cord-256201-vjzfzshh 215 43 are be VBP cord-256201-vjzfzshh 215 44 also also RB cord-256201-vjzfzshh 215 45 absent absent JJ cord-256201-vjzfzshh 215 46 from from IN cord-256201-vjzfzshh 215 47 the the DT cord-256201-vjzfzshh 215 48 WT WT NNP cord-256201-vjzfzshh 215 49 /X174 /X174 NNP cord-256201-vjzfzshh 215 50 genome genome NN cord-256201-vjzfzshh 215 51 . . . cord-256201-vjzfzshh 216 1 Mutation mutation NN cord-256201-vjzfzshh 216 2 rate rate NN cord-256201-vjzfzshh 216 3 elevation elevation NN cord-256201-vjzfzshh 216 4 can can MD cord-256201-vjzfzshh 216 5 confer confer VB cord-256201-vjzfzshh 216 6 faster fast JJR cord-256201-vjzfzshh 216 7 adaptation adaptation NN cord-256201-vjzfzshh 216 8 to to IN cord-256201-vjzfzshh 216 9 new new JJ cord-256201-vjzfzshh 216 10 and and CC cord-256201-vjzfzshh 216 11 stressful stressful JJ cord-256201-vjzfzshh 216 12 environments environment NNS cord-256201-vjzfzshh 216 13 , , , cord-256201-vjzfzshh 216 14 and and CC cord-256201-vjzfzshh 216 15 this this DT cord-256201-vjzfzshh 216 16 has have VBZ cord-256201-vjzfzshh 216 17 been be VBN cord-256201-vjzfzshh 216 18 shown show VBN cord-256201-vjzfzshh 216 19 to to TO cord-256201-vjzfzshh 216 20 promote promote VB cord-256201-vjzfzshh 216 21 the the DT cord-256201-vjzfzshh 216 22 spread spread NN cord-256201-vjzfzshh 216 23 of of IN cord-256201-vjzfzshh 216 24 mutator mutator NN cord-256201-vjzfzshh 216 25 strains strain NNS cord-256201-vjzfzshh 216 26 in in IN cord-256201-vjzfzshh 216 27 bacteria bacteria NNS cord-256201-vjzfzshh 216 28 ( ( -LRB- cord-256201-vjzfzshh 216 29 LeClerc LeClerc NNP cord-256201-vjzfzshh 216 30 et et NNP cord-256201-vjzfzshh 216 31 al al NNP cord-256201-vjzfzshh 216 32 . . . cord-256201-vjzfzshh 217 1 1996 1996 CD cord-256201-vjzfzshh 217 2 ; ; : cord-256201-vjzfzshh 217 3 Sniegowski Sniegowski NNP cord-256201-vjzfzshh 217 4 , , , cord-256201-vjzfzshh 217 5 Gerrish Gerrish NNP cord-256201-vjzfzshh 217 6 , , , cord-256201-vjzfzshh 217 7 and and CC cord-256201-vjzfzshh 217 8 Lenski Lenski NNP cord-256201-vjzfzshh 217 9 1997 1997 CD cord-256201-vjzfzshh 217 10 ; ; : cord-256201-vjzfzshh 217 11 Jolivet Jolivet NNP cord-256201-vjzfzshh 217 12 - - HYPH cord-256201-vjzfzshh 217 13 Gougeon Gougeon NNP cord-256201-vjzfzshh 217 14 et et NNP cord-256201-vjzfzshh 217 15 al al NNP cord-256201-vjzfzshh 217 16 . . NNP cord-256201-vjzfzshh 217 17 2011 2011 CD cord-256201-vjzfzshh 217 18 ) ) -RRB- cord-256201-vjzfzshh 217 19 . . . cord-256201-vjzfzshh 218 1 Furthermore furthermore RB cord-256201-vjzfzshh 218 2 , , , cord-256201-vjzfzshh 218 3 bacteria bacteria NNS cord-256201-vjzfzshh 218 4 have have VBP cord-256201-vjzfzshh 218 5 evolved evolve VBN cord-256201-vjzfzshh 218 6 the the DT cord-256201-vjzfzshh 218 7 ability ability NN cord-256201-vjzfzshh 218 8 to to TO cord-256201-vjzfzshh 218 9 up up RB cord-256201-vjzfzshh 218 10 - - HYPH cord-256201-vjzfzshh 218 11 regulate regulate VB cord-256201-vjzfzshh 218 12 their -PRON- PRP$ cord-256201-vjzfzshh 218 13 mutation mutation NN cord-256201-vjzfzshh 218 14 rates rate NNS cord-256201-vjzfzshh 218 15 in in IN cord-256201-vjzfzshh 218 16 response response NN cord-256201-vjzfzshh 218 17 to to IN cord-256201-vjzfzshh 218 18 stress stress NN cord-256201-vjzfzshh 218 19 by by IN cord-256201-vjzfzshh 218 20 expressing express VBG cord-256201-vjzfzshh 218 21 of of IN cord-256201-vjzfzshh 218 22 error error NN cord-256201-vjzfzshh 218 23 - - HYPH cord-256201-vjzfzshh 218 24 prone prone JJ cord-256201-vjzfzshh 218 25 polymerases polymerase NNS cord-256201-vjzfzshh 218 26 ( ( -LRB- cord-256201-vjzfzshh 218 27 Rosenberg Rosenberg NNP cord-256201-vjzfzshh 218 28 2001 2001 CD cord-256201-vjzfzshh 218 29 ; ; : cord-256201-vjzfzshh 218 30 Galhardo Galhardo NNP cord-256201-vjzfzshh 218 31 , , , cord-256201-vjzfzshh 218 32 Hastings Hastings NNP cord-256201-vjzfzshh 218 33 , , , cord-256201-vjzfzshh 218 34 and and CC cord-256201-vjzfzshh 218 35 Rosenberg Rosenberg NNP cord-256201-vjzfzshh 218 36 2007 2007 CD cord-256201-vjzfzshh 218 37 ) ) -RRB- cord-256201-vjzfzshh 218 38 . . . cord-256201-vjzfzshh 219 1 However however RB cord-256201-vjzfzshh 219 2 , , , cord-256201-vjzfzshh 219 3 we -PRON- PRP cord-256201-vjzfzshh 219 4 have have VBP cord-256201-vjzfzshh 219 5 shown show VBN cord-256201-vjzfzshh 219 6 that that IN cord-256201-vjzfzshh 219 7 GATC GATC NNP cord-256201-vjzfzshh 219 8 avoidance avoidance NN cord-256201-vjzfzshh 219 9 does do VBZ cord-256201-vjzfzshh 219 10 not not RB cord-256201-vjzfzshh 219 11 appear appear VB cord-256201-vjzfzshh 219 12 to to TO cord-256201-vjzfzshh 219 13 increase increase VB cord-256201-vjzfzshh 219 14 the the DT cord-256201-vjzfzshh 219 15 /X174 /X174 NFP cord-256201-vjzfzshh 219 16 mutation mutation NN cord-256201-vjzfzshh 219 17 rate rate NN cord-256201-vjzfzshh 219 18 under under IN cord-256201-vjzfzshh 219 19 stress stress NN cord-256201-vjzfzshh 219 20 conditions condition NNS cord-256201-vjzfzshh 219 21 , , , cord-256201-vjzfzshh 219 22 thus thus RB cord-256201-vjzfzshh 219 23 undermining undermine VBG cord-256201-vjzfzshh 219 24 the the DT cord-256201-vjzfzshh 219 25 potential potential JJ cord-256201-vjzfzshh 219 26 evolutionary evolutionary JJ cord-256201-vjzfzshh 219 27 advantage advantage NN cord-256201-vjzfzshh 219 28 of of IN cord-256201-vjzfzshh 219 29 such such JJ cord-256201-vjzfzshh 219 30 avoidance avoidance NN cord-256201-vjzfzshh 219 31 . . . cord-256201-vjzfzshh 220 1 It -PRON- PRP cord-256201-vjzfzshh 220 2 has have VBZ cord-256201-vjzfzshh 220 3 been be VBN cord-256201-vjzfzshh 220 4 shown show VBN cord-256201-vjzfzshh 220 5 that that IN cord-256201-vjzfzshh 220 6 phage phage NN cord-256201-vjzfzshh 220 7 yields yield NNS cord-256201-vjzfzshh 220 8 tend tend VBP cord-256201-vjzfzshh 220 9 to to TO cord-256201-vjzfzshh 220 10 decrease decrease VB cord-256201-vjzfzshh 220 11 in in IN cord-256201-vjzfzshh 220 12 dam dam NN cord-256201-vjzfzshh 220 13 -mutH -mutH : cord-256201-vjzfzshh 220 14 þ þ NN cord-256201-vjzfzshh 220 15 suggesting suggest VBG cord-256201-vjzfzshh 220 16 that that IN cord-256201-vjzfzshh 220 17 , , , cord-256201-vjzfzshh 220 18 in in IN cord-256201-vjzfzshh 220 19 the the DT cord-256201-vjzfzshh 220 20 absence absence NN cord-256201-vjzfzshh 220 21 of of IN cord-256201-vjzfzshh 220 22 methylation methylation NN cord-256201-vjzfzshh 220 23 , , , cord-256201-vjzfzshh 220 24 MutH MutH NNP cord-256201-vjzfzshh 220 25 cleaves cleave VBZ cord-256201-vjzfzshh 220 26 some some DT cord-256201-vjzfzshh 220 27 GATC GATC NNP cord-256201-vjzfzshh 220 28 sites site NNS cord-256201-vjzfzshh 220 29 non non VBP cord-256201-vjzfzshh 220 30 - - JJ cord-256201-vjzfzshh 220 31 specifically specifically RB cord-256201-vjzfzshh 220 32 and and CC cord-256201-vjzfzshh 220 33 may may MD cord-256201-vjzfzshh 220 34 also also RB cord-256201-vjzfzshh 220 35 interfere interfere VB cord-256201-vjzfzshh 220 36 with with IN cord-256201-vjzfzshh 220 37 other other JJ cord-256201-vjzfzshh 220 38 stages stage NNS cord-256201-vjzfzshh 220 39 of of IN cord-256201-vjzfzshh 220 40 the the DT cord-256201-vjzfzshh 220 41 infection infection NN cord-256201-vjzfzshh 220 42 cycle cycle NN cord-256201-vjzfzshh 220 43 such such JJ cord-256201-vjzfzshh 220 44 as as IN cord-256201-vjzfzshh 220 45 replication replication NN cord-256201-vjzfzshh 220 46 or or CC cord-256201-vjzfzshh 220 47 encapsidation encapsidation NN cord-256201-vjzfzshh 220 48 ( ( -LRB- cord-256201-vjzfzshh 220 49 Deschavanne Deschavanne NNP cord-256201-vjzfzshh 220 50 and and CC cord-256201-vjzfzshh 220 51 Radman Radman NNP cord-256201-vjzfzshh 220 52 1991 1991 CD cord-256201-vjzfzshh 220 53 ) ) -RRB- cord-256201-vjzfzshh 220 54 . . . cord-256201-vjzfzshh 221 1 This this DT cord-256201-vjzfzshh 221 2 would would MD cord-256201-vjzfzshh 221 3 directly directly RB cord-256201-vjzfzshh 221 4 counterselect counterselect VB cord-256201-vjzfzshh 221 5 GATC GATC NNP cord-256201-vjzfzshh 221 6 sequence sequence NN cord-256201-vjzfzshh 221 7 motifs motif NNS cord-256201-vjzfzshh 221 8 in in IN cord-256201-vjzfzshh 221 9 the the DT cord-256201-vjzfzshh 221 10 phage phage NN cord-256201-vjzfzshh 221 11 . . . cord-256201-vjzfzshh 222 1 Although although IN cord-256201-vjzfzshh 222 2 in in IN cord-256201-vjzfzshh 222 3 our -PRON- PRP$ cord-256201-vjzfzshh 222 4 experimental experimental JJ cord-256201-vjzfzshh 222 5 setting setting NN cord-256201-vjzfzshh 222 6 , , , cord-256201-vjzfzshh 222 7 we -PRON- PRP cord-256201-vjzfzshh 222 8 did do VBD cord-256201-vjzfzshh 222 9 not not RB cord-256201-vjzfzshh 222 10 detect detect VB cord-256201-vjzfzshh 222 11 a a DT cord-256201-vjzfzshh 222 12 significant significant JJ cord-256201-vjzfzshh 222 13 deleterious deleterious JJ cord-256201-vjzfzshh 222 14 fitness fitness NN cord-256201-vjzfzshh 222 15 effect effect NN cord-256201-vjzfzshh 222 16 associated associate VBN cord-256201-vjzfzshh 222 17 with with IN cord-256201-vjzfzshh 222 18 GATCs GATCs NNPS cord-256201-vjzfzshh 222 19 in in IN cord-256201-vjzfzshh 222 20 the the DT cord-256201-vjzfzshh 222 21 absence absence NN cord-256201-vjzfzshh 222 22 of of IN cord-256201-vjzfzshh 222 23 stress stress NN cord-256201-vjzfzshh 222 24 , , , cord-256201-vjzfzshh 222 25 such such JJ cord-256201-vjzfzshh 222 26 effects effect NNS cord-256201-vjzfzshh 222 27 may may MD cord-256201-vjzfzshh 222 28 potentially potentially RB cord-256201-vjzfzshh 222 29 take take VB cord-256201-vjzfzshh 222 30 place place NN cord-256201-vjzfzshh 222 31 in in IN cord-256201-vjzfzshh 222 32 other other JJ cord-256201-vjzfzshh 222 33 environments environment NNS cord-256201-vjzfzshh 222 34 not not RB cord-256201-vjzfzshh 222 35 assayed assay VBN cord-256201-vjzfzshh 222 36 here here RB cord-256201-vjzfzshh 222 37 . . . cord-256201-vjzfzshh 223 1 Therefore therefore RB cord-256201-vjzfzshh 223 2 , , , cord-256201-vjzfzshh 223 3 the the DT cord-256201-vjzfzshh 223 4 evolutionary evolutionary JJ cord-256201-vjzfzshh 223 5 forces force NNS cord-256201-vjzfzshh 223 6 shaping shape VBG cord-256201-vjzfzshh 223 7 GATC GATC NNP cord-256201-vjzfzshh 223 8 avoidance avoidance NN cord-256201-vjzfzshh 223 9 remain remain VBP cord-256201-vjzfzshh 223 10 unclear unclear JJ cord-256201-vjzfzshh 223 11 , , , cord-256201-vjzfzshh 223 12 and and CC cord-256201-vjzfzshh 223 13 may may MD cord-256201-vjzfzshh 223 14 result result VB cord-256201-vjzfzshh 223 15 from from IN cord-256201-vjzfzshh 223 16 the the DT cord-256201-vjzfzshh 223 17 joint joint JJ cord-256201-vjzfzshh 223 18 action action NN cord-256201-vjzfzshh 223 19 of of IN cord-256201-vjzfzshh 223 20 several several JJ cord-256201-vjzfzshh 223 21 factors factor NNS cord-256201-vjzfzshh 223 22 . . . cord-256201-vjzfzshh 224 1 Interestingly interestingly RB cord-256201-vjzfzshh 224 2 , , , cord-256201-vjzfzshh 224 3 DNA dna NN cord-256201-vjzfzshh 224 4 repair repair NN cord-256201-vjzfzshh 224 5 pathways pathway NNS cord-256201-vjzfzshh 224 6 may may MD cord-256201-vjzfzshh 224 7 also also RB cord-256201-vjzfzshh 224 8 be be VB cord-256201-vjzfzshh 224 9 relevant relevant JJ cord-256201-vjzfzshh 224 10 to to IN cord-256201-vjzfzshh 224 11 virus virus NN cord-256201-vjzfzshh 224 12 - - HYPH cord-256201-vjzfzshh 224 13 host host NN cord-256201-vjzfzshh 224 14 interactions interaction NNS cord-256201-vjzfzshh 224 15 in in IN cord-256201-vjzfzshh 224 16 eukaryotes eukaryote NNS cord-256201-vjzfzshh 224 17 . . . cord-256201-vjzfzshh 225 1 Vertebrate vertebrate JJ cord-256201-vjzfzshh 225 2 DNA dna NN cord-256201-vjzfzshh 225 3 viruses virus NNS cord-256201-vjzfzshh 225 4 have have VBP cord-256201-vjzfzshh 225 5 been be VBN cord-256201-vjzfzshh 225 6 shown show VBN cord-256201-vjzfzshh 225 7 to to TO cord-256201-vjzfzshh 225 8 interact interact VB cord-256201-vjzfzshh 225 9 with with IN cord-256201-vjzfzshh 225 10 the the DT cord-256201-vjzfzshh 225 11 evolutionarily evolutionarily RB cord-256201-vjzfzshh 225 12 conserved conserve VBN cord-256201-vjzfzshh 225 13 DDR ddr NN cord-256201-vjzfzshh 225 14 , , , cord-256201-vjzfzshh 225 15 which which WDT cord-256201-vjzfzshh 225 16 is be VBZ cord-256201-vjzfzshh 225 17 aimed aim VBN cord-256201-vjzfzshh 225 18 at at IN cord-256201-vjzfzshh 225 19 detecting detect VBG cord-256201-vjzfzshh 225 20 lesions lesion NNS cord-256201-vjzfzshh 225 21 in in IN cord-256201-vjzfzshh 225 22 DNA dna NN cord-256201-vjzfzshh 225 23 , , , cord-256201-vjzfzshh 225 24 initiating initiate VBG cord-256201-vjzfzshh 225 25 cell cell NN cord-256201-vjzfzshh 225 26 cycle cycle NN cord-256201-vjzfzshh 225 27 arrest arrest NN cord-256201-vjzfzshh 225 28 , , , cord-256201-vjzfzshh 225 29 and and CC cord-256201-vjzfzshh 225 30 promoting promote VBG cord-256201-vjzfzshh 225 31 repair repair NN cord-256201-vjzfzshh 225 32 . . . cord-256201-vjzfzshh 226 1 For for IN cord-256201-vjzfzshh 226 2 instance instance NN cord-256201-vjzfzshh 226 3 , , , cord-256201-vjzfzshh 226 4 in in IN cord-256201-vjzfzshh 226 5 hepadnaviruses hepadnavirus NNS cord-256201-vjzfzshh 226 6 , , , cord-256201-vjzfzshh 226 7 the the DT cord-256201-vjzfzshh 226 8 synthesis synthesis NN cord-256201-vjzfzshh 226 9 of of IN cord-256201-vjzfzshh 226 10 replication replication NN cord-256201-vjzfzshh 226 11 - - HYPH cord-256201-vjzfzshh 226 12 competent competent JJ cord-256201-vjzfzshh 226 13 covalently covalently RB cord-256201-vjzfzshh 226 14 closed closed JJ cord-256201-vjzfzshh 226 15 circular circular JJ cord-256201-vjzfzshh 226 16 DNA dna NN cord-256201-vjzfzshh 226 17 requires require VBZ cord-256201-vjzfzshh 226 18 the the DT cord-256201-vjzfzshh 226 19 participation participation NN cord-256201-vjzfzshh 226 20 of of IN cord-256201-vjzfzshh 226 21 Ku80 Ku80 NNP cord-256201-vjzfzshh 226 22 , , , cord-256201-vjzfzshh 226 23 a a DT cord-256201-vjzfzshh 226 24 component component NN cord-256201-vjzfzshh 226 25 of of IN cord-256201-vjzfzshh 226 26 non non JJ cord-256201-vjzfzshh 226 27 - - JJ cord-256201-vjzfzshh 226 28 homologous homologous JJ cord-256201-vjzfzshh 226 29 end end NN cord-256201-vjzfzshh 226 30 joining join VBG cord-256201-vjzfzshh 226 31 DNA dna NN cord-256201-vjzfzshh 226 32 repair repair NN cord-256201-vjzfzshh 226 33 pathway pathway NN cord-256201-vjzfzshh 226 34 ( ( -LRB- cord-256201-vjzfzshh 226 35 Guo Guo NNP cord-256201-vjzfzshh 226 36 et et FW cord-256201-vjzfzshh 226 37 al al NNP cord-256201-vjzfzshh 226 38 . . NNP cord-256201-vjzfzshh 226 39 2012 2012 CD cord-256201-vjzfzshh 226 40 ) ) -RRB- cord-256201-vjzfzshh 226 41 . . . cord-256201-vjzfzshh 227 1 Indeed indeed RB cord-256201-vjzfzshh 227 2 , , , cord-256201-vjzfzshh 227 3 DNA dna NN cord-256201-vjzfzshh 227 4 damage damage NN cord-256201-vjzfzshh 227 5 induction induction NN cord-256201-vjzfzshh 227 6 seems seem VBZ cord-256201-vjzfzshh 227 7 to to TO cord-256201-vjzfzshh 227 8 be be VB cord-256201-vjzfzshh 227 9 a a DT cord-256201-vjzfzshh 227 10 common common JJ cord-256201-vjzfzshh 227 11 feature feature NN cord-256201-vjzfzshh 227 12 of of IN cord-256201-vjzfzshh 227 13 many many JJ cord-256201-vjzfzshh 227 14 DNA dna NN cord-256201-vjzfzshh 227 15 viruses virus NNS cord-256201-vjzfzshh 227 16 including include VBG cord-256201-vjzfzshh 227 17 adenoviruses adenovirus NNS cord-256201-vjzfzshh 227 18 , , , cord-256201-vjzfzshh 227 19 herpesviruses herpesviruses NNP cord-256201-vjzfzshh 227 20 , , , cord-256201-vjzfzshh 227 21 polyomaviruses polyomaviruse NNS cord-256201-vjzfzshh 227 22 , , , cord-256201-vjzfzshh 227 23 and and CC cord-256201-vjzfzshh 227 24 papillomaviruses papillomaviruse NNS cord-256201-vjzfzshh 227 25 ( ( -LRB- cord-256201-vjzfzshh 227 26 Luftig Luftig NNP cord-256201-vjzfzshh 227 27 2014 2014 CD cord-256201-vjzfzshh 227 28 ) ) -RRB- cord-256201-vjzfzshh 227 29 . . . cord-256201-vjzfzshh 228 1 Most Most JJS cord-256201-vjzfzshh 228 2 viruses virus NNS cord-256201-vjzfzshh 228 3 degrade degrade VBP cord-256201-vjzfzshh 228 4 DDR ddr NN cord-256201-vjzfzshh 228 5 components component NNS cord-256201-vjzfzshh 228 6 , , , cord-256201-vjzfzshh 228 7 but but CC cord-256201-vjzfzshh 228 8 DDR ddr NN cord-256201-vjzfzshh 228 9 activation activation NN cord-256201-vjzfzshh 228 10 and and CC cord-256201-vjzfzshh 228 11 recruitment recruitment NN cord-256201-vjzfzshh 228 12 of of IN cord-256201-vjzfzshh 228 13 some some DT cord-256201-vjzfzshh 228 14 of of IN cord-256201-vjzfzshh 228 15 its -PRON- PRP$ cord-256201-vjzfzshh 228 16 components component NNS cord-256201-vjzfzshh 228 17 into into IN cord-256201-vjzfzshh 228 18 viral viral JJ cord-256201-vjzfzshh 228 19 replication replication NN cord-256201-vjzfzshh 228 20 centers center NNS cord-256201-vjzfzshh 228 21 is be VBZ cord-256201-vjzfzshh 228 22 also also RB cord-256201-vjzfzshh 228 23 common common JJ cord-256201-vjzfzshh 228 24 . . . cord-256201-vjzfzshh 229 1 However however RB cord-256201-vjzfzshh 229 2 , , , cord-256201-vjzfzshh 229 3 the the DT cord-256201-vjzfzshh 229 4 outcomes outcome NNS cord-256201-vjzfzshh 229 5 of of IN cord-256201-vjzfzshh 229 6 virus virus NN cord-256201-vjzfzshh 229 7 - - HYPH cord-256201-vjzfzshh 229 8 host host NN cord-256201-vjzfzshh 229 9 interactions interaction NNS cord-256201-vjzfzshh 229 10 at at IN cord-256201-vjzfzshh 229 11 the the DT cord-256201-vjzfzshh 229 12 DDR ddr NN cord-256201-vjzfzshh 229 13 level level NN cord-256201-vjzfzshh 229 14 are be VBP cord-256201-vjzfzshh 229 15 still still RB cord-256201-vjzfzshh 229 16 poorly poorly RB cord-256201-vjzfzshh 229 17 understood understand VBN cord-256201-vjzfzshh 229 18 , , , cord-256201-vjzfzshh 229 19 and and CC cord-256201-vjzfzshh 229 20 it -PRON- PRP cord-256201-vjzfzshh 229 21 remains remain VBZ cord-256201-vjzfzshh 229 22 at at IN cord-256201-vjzfzshh 229 23 present present JJ cord-256201-vjzfzshh 229 24 unknown unknown NN cord-256201-vjzfzshh 229 25 whether whether IN cord-256201-vjzfzshh 229 26 DDR ddr NN cord-256201-vjzfzshh 229 27 activation activation NN cord-256201-vjzfzshh 229 28 is be VBZ cord-256201-vjzfzshh 229 29 part part NN cord-256201-vjzfzshh 229 30 of of IN cord-256201-vjzfzshh 229 31 an an DT cord-256201-vjzfzshh 229 32 antiviral antiviral JJ cord-256201-vjzfzshh 229 33 cellular cellular JJ cord-256201-vjzfzshh 229 34 response response NN cord-256201-vjzfzshh 229 35 or or CC cord-256201-vjzfzshh 229 36 is be VBZ cord-256201-vjzfzshh 229 37 exploited exploit VBN cord-256201-vjzfzshh 229 38 by by IN cord-256201-vjzfzshh 229 39 the the DT cord-256201-vjzfzshh 229 40 virus virus NN cord-256201-vjzfzshh 229 41 . . . cord-256201-vjzfzshh 230 1 In in IN cord-256201-vjzfzshh 230 2 any any DT cord-256201-vjzfzshh 230 3 case case NN cord-256201-vjzfzshh 230 4 , , , cord-256201-vjzfzshh 230 5 repair repair NN cord-256201-vjzfzshh 230 6 pathways pathway NNS cord-256201-vjzfzshh 230 7 are be VBP cord-256201-vjzfzshh 230 8 activated activate VBN cord-256201-vjzfzshh 230 9 following follow VBG cord-256201-vjzfzshh 230 10 virus virus NN cord-256201-vjzfzshh 230 11 - - HYPH cord-256201-vjzfzshh 230 12 induced induce VBN cord-256201-vjzfzshh 230 13 DNA dna NN cord-256201-vjzfzshh 230 14 damage damage NN cord-256201-vjzfzshh 230 15 , , , cord-256201-vjzfzshh 230 16 leading lead VBG cord-256201-vjzfzshh 230 17 to to IN cord-256201-vjzfzshh 230 18 the the DT cord-256201-vjzfzshh 230 19 recruitment recruitment NN cord-256201-vjzfzshh 230 20 of of IN cord-256201-vjzfzshh 230 21 error error NN cord-256201-vjzfzshh 230 22 - - HYPH cord-256201-vjzfzshh 230 23 prone prone JJ cord-256201-vjzfzshh 230 24 host host NN cord-256201-vjzfzshh 230 25 polymerases polymerase NNS cord-256201-vjzfzshh 230 26 ( ( -LRB- cord-256201-vjzfzshh 230 27 Malkova Malkova NNP cord-256201-vjzfzshh 230 28 and and CC cord-256201-vjzfzshh 230 29 Haber Haber NNP cord-256201-vjzfzshh 230 30 2012 2012 CD cord-256201-vjzfzshh 230 31 ) ) -RRB- cord-256201-vjzfzshh 230 32 . . . cord-256201-vjzfzshh 231 1 This this DT cord-256201-vjzfzshh 231 2 suggests suggest VBZ cord-256201-vjzfzshh 231 3 that that IN cord-256201-vjzfzshh 231 4 changes change NNS cord-256201-vjzfzshh 231 5 in in IN cord-256201-vjzfzshh 231 6 MMR MMR NNP cord-256201-vjzfzshh 231 7 efficiency efficiency NN cord-256201-vjzfzshh 231 8 following follow VBG cord-256201-vjzfzshh 231 9 infection infection NN cord-256201-vjzfzshh 231 10 may may MD cord-256201-vjzfzshh 231 11 determine determine VB cord-256201-vjzfzshh 231 12 the the DT cord-256201-vjzfzshh 231 13 mutation mutation NN cord-256201-vjzfzshh 231 14 rates rate NNS cord-256201-vjzfzshh 231 15 of of IN cord-256201-vjzfzshh 231 16 some some DT cord-256201-vjzfzshh 231 17 DNA dna NN cord-256201-vjzfzshh 231 18 viruses virus NNS cord-256201-vjzfzshh 231 19 . . . cord-256201-vjzfzshh 232 1 Thymine Thymine NNP cord-256201-vjzfzshh 232 2 Metabolism Metabolism NNP cord-256201-vjzfzshh 232 3 and and CC cord-256201-vjzfzshh 232 4 Thymineless Thymineless NNP cord-256201-vjzfzshh 232 5 Death Death NNP cord-256201-vjzfzshh 232 6 in in IN cord-256201-vjzfzshh 232 7 Prokaryotes Prokaryotes NNPS cord-256201-vjzfzshh 232 8 and and CC cord-256201-vjzfzshh 232 9 Eukaryotes eukaryote NNS cord-256201-vjzfzshh 233 1 The the DT cord-256201-vjzfzshh 233 2 Evolution Evolution NNP cord-256201-vjzfzshh 233 3 of of IN cord-256201-vjzfzshh 233 4 Mutation Mutation NNP cord-256201-vjzfzshh 233 5 Rate rate NN cord-256201-vjzfzshh 233 6 in in IN cord-256201-vjzfzshh 233 7 Finite finite JJ cord-256201-vjzfzshh 233 8 Asexual Asexual NNP cord-256201-vjzfzshh 233 9 Populations Populations NNPS cord-256201-vjzfzshh 233 10 Determinants Determinants NNPS cord-256201-vjzfzshh 233 11 of of IN cord-256201-vjzfzshh 233 12 RNA RNA NNP cord-256201-vjzfzshh 233 13 - - HYPH cord-256201-vjzfzshh 233 14 Dependent Dependent NNP cord-256201-vjzfzshh 233 15 RNA RNA NNP cord-256201-vjzfzshh 233 16 Polymerase Polymerase NNP cord-256201-vjzfzshh 233 17 ( ( -LRB- cord-256201-vjzfzshh 233 18 In)fidelity in)fidelity NN cord-256201-vjzfzshh 233 19 Revealed reveal VBN cord-256201-vjzfzshh 233 20 by by IN cord-256201-vjzfzshh 233 21 Kinetic Kinetic NNP cord-256201-vjzfzshh 233 22 Analysis Analysis NNP cord-256201-vjzfzshh 233 23 of of IN cord-256201-vjzfzshh 233 24 the the DT cord-256201-vjzfzshh 233 25 Polymerase Polymerase NNP cord-256201-vjzfzshh 233 26 Encoded encode VBN cord-256201-vjzfzshh 233 27 by by IN cord-256201-vjzfzshh 233 28 a a DT cord-256201-vjzfzshh 233 29 Foot Foot NNP cord-256201-vjzfzshh 233 30 - - HYPH cord-256201-vjzfzshh 233 31 and and CC cord-256201-vjzfzshh 233 32 - - HYPH cord-256201-vjzfzshh 233 33 Mouth Mouth NNP cord-256201-vjzfzshh 233 34 Disease Disease NNP cord-256201-vjzfzshh 233 35 Virus Virus NNP cord-256201-vjzfzshh 233 36 Mutant Mutant NNP cord-256201-vjzfzshh 233 37 with with IN cord-256201-vjzfzshh 233 38 Reduced reduce VBN cord-256201-vjzfzshh 233 39 Sensitivity sensitivity NN cord-256201-vjzfzshh 233 40 to to IN cord-256201-vjzfzshh 233 41 Ribavirin Ribavirin NNP cord-256201-vjzfzshh 233 42 Characterization characterization NN cord-256201-vjzfzshh 233 43 of of IN cord-256201-vjzfzshh 233 44 DNA dna NN cord-256201-vjzfzshh 233 45 Adenine Adenine NNP cord-256201-vjzfzshh 233 46 Methylation Methylation NNP cord-256201-vjzfzshh 233 47 Mutants mutant NNS cord-256201-vjzfzshh 233 48 of of IN cord-256201-vjzfzshh 233 49 Escherichia Escherichia NNP cord-256201-vjzfzshh 233 50 coli coli VBZ cord-256201-vjzfzshh 233 51 K12 K12 NNP cord-256201-vjzfzshh 233 52 Correlation Correlation NNP cord-256201-vjzfzshh 233 53 between between IN cord-256201-vjzfzshh 233 54 Mutation Mutation NNP cord-256201-vjzfzshh 233 55 Rate Rate NNP cord-256201-vjzfzshh 233 56 and and CC cord-256201-vjzfzshh 233 57 Genome Genome NNP cord-256201-vjzfzshh 233 58 Size size NN cord-256201-vjzfzshh 233 59 in in IN cord-256201-vjzfzshh 233 60 Riboviruses Riboviruses NNP cord-256201-vjzfzshh 233 61 : : : cord-256201-vjzfzshh 233 62 Mutation mutation NN cord-256201-vjzfzshh 233 63 Rate rate NN cord-256201-vjzfzshh 233 64 of of IN cord-256201-vjzfzshh 233 65 Bacteriophage Bacteriophage NNP cord-256201-vjzfzshh 233 66 Qb Qb NNP cord-256201-vjzfzshh 233 67 Natural Natural NNP cord-256201-vjzfzshh 233 68 Selection Selection NNP cord-256201-vjzfzshh 233 69 Fails fail VBZ cord-256201-vjzfzshh 233 70 to to TO cord-256201-vjzfzshh 233 71 Optimize optimize VB cord-256201-vjzfzshh 233 72 Mutation mutation NN cord-256201-vjzfzshh 233 73 Rates Rates NNPS cord-256201-vjzfzshh 233 74 for for IN cord-256201-vjzfzshh 233 75 Long Long NNP cord-256201-vjzfzshh 233 76 - - HYPH cord-256201-vjzfzshh 233 77 Term term NN cord-256201-vjzfzshh 233 78 Adaptation adaptation NN cord-256201-vjzfzshh 233 79 on on IN cord-256201-vjzfzshh 233 80 Rugged Rugged NNP cord-256201-vjzfzshh 233 81 Fitness Fitness NNP cord-256201-vjzfzshh 233 82 Landscapes Landscapes NNP cord-256201-vjzfzshh 233 83 Arbovirus Arbovirus NNP cord-256201-vjzfzshh 233 84 High High NNP cord-256201-vjzfzshh 233 85 Fidelity Fidelity NNP cord-256201-vjzfzshh 233 86 Variant variant NN cord-256201-vjzfzshh 234 1 Loses lose VBZ cord-256201-vjzfzshh 234 2 Fitness Fitness NNP cord-256201-vjzfzshh 234 3 in in IN cord-256201-vjzfzshh 234 4 Mosquitoes Mosquitoes NNPS cord-256201-vjzfzshh 234 5 and and CC cord-256201-vjzfzshh 234 6 Mice Mice NNP cord-256201-vjzfzshh 234 7 Mutation Mutation NNP cord-256201-vjzfzshh 234 8 Rate rate NN cord-256201-vjzfzshh 234 9 of of IN cord-256201-vjzfzshh 234 10 Bacteriophage Bacteriophage NNP cord-256201-vjzfzshh 234 11 /X174 /X174 . cord-256201-vjzfzshh 235 1 Modified modify VBN cord-256201-vjzfzshh 235 2 through through IN cord-256201-vjzfzshh 235 3 Changes change NNS cord-256201-vjzfzshh 235 4 in in IN cord-256201-vjzfzshh 235 5 GATC GATC NNP cord-256201-vjzfzshh 235 6 Sequence Sequence NNP cord-256201-vjzfzshh 235 7 Context Context NNP cord-256201-vjzfzshh 235 8 Coronaviruses Coronaviruses NNP cord-256201-vjzfzshh 235 9 : : : cord-256201-vjzfzshh 236 1 An an DT cord-256201-vjzfzshh 236 2 RNA RNA NNP cord-256201-vjzfzshh 236 3 Proofreading Proofreading NNP cord-256201-vjzfzshh 236 4 Machine machine NN cord-256201-vjzfzshh 236 5 Regulates regulate VBZ cord-256201-vjzfzshh 236 6 Replication Replication NNP cord-256201-vjzfzshh 236 7 Fidelity Fidelity NNP cord-256201-vjzfzshh 236 8 and and CC cord-256201-vjzfzshh 236 9 Diversity Diversity NNP cord-256201-vjzfzshh 236 10 Counterselection Counterselection NNP cord-256201-vjzfzshh 236 11 of of IN cord-256201-vjzfzshh 236 12 GATC GATC NNP cord-256201-vjzfzshh 236 13 Sequences Sequences NNPS cord-256201-vjzfzshh 236 14 in in IN cord-256201-vjzfzshh 236 15 Enterobacteriophages Enterobacteriophages NNPS cord-256201-vjzfzshh 236 16 by by IN cord-256201-vjzfzshh 236 17 the the DT cord-256201-vjzfzshh 236 18 Components Components NNP cord-256201-vjzfzshh 236 19 of of IN cord-256201-vjzfzshh 236 20 the the DT cord-256201-vjzfzshh 236 21 Methyl Methyl NNP cord-256201-vjzfzshh 236 22 - - HYPH cord-256201-vjzfzshh 236 23 Directed direct VBN cord-256201-vjzfzshh 236 24 Mismatch Mismatch NNP cord-256201-vjzfzshh 236 25 Repair Repair NNP cord-256201-vjzfzshh 236 26 System System NNP cord-256201-vjzfzshh 236 27 Nucleoside Nucleoside NNP cord-256201-vjzfzshh 236 28 Analogue Analogue NNP cord-256201-vjzfzshh 236 29 Mutagenesis Mutagenesis NNP cord-256201-vjzfzshh 236 30 of of IN cord-256201-vjzfzshh 236 31 a a DT cord-256201-vjzfzshh 236 32 Single Single NNP cord-256201-vjzfzshh 236 33 - - HYPH cord-256201-vjzfzshh 236 34 Stranded stranded JJ cord-256201-vjzfzshh 236 35 DNA dna NN cord-256201-vjzfzshh 236 36 Virus virus NN cord-256201-vjzfzshh 236 37 : : : cord-256201-vjzfzshh 236 38 Evolution evolution NN cord-256201-vjzfzshh 236 39 and and CC cord-256201-vjzfzshh 236 40 Resistance Resistance NNP cord-256201-vjzfzshh 236 41 A a DT cord-256201-vjzfzshh 236 42 Constant constant JJ cord-256201-vjzfzshh 236 43 Rate rate NN cord-256201-vjzfzshh 236 44 of of IN cord-256201-vjzfzshh 236 45 Spontaneous Spontaneous NNP cord-256201-vjzfzshh 236 46 Mutation Mutation NNP cord-256201-vjzfzshh 236 47 in in IN cord-256201-vjzfzshh 236 48 DNA DNA NNP cord-256201-vjzfzshh 236 49 - - HYPH cord-256201-vjzfzshh 236 50 Based base VBN cord-256201-vjzfzshh 236 51 Microbes Microbes NNPS cord-256201-vjzfzshh 236 52 Suppression Suppression NNP cord-256201-vjzfzshh 236 53 of of IN cord-256201-vjzfzshh 236 54 Chemical Chemical NNP cord-256201-vjzfzshh 236 55 Mutagenesis Mutagenesis NNP cord-256201-vjzfzshh 236 56 in in IN cord-256201-vjzfzshh 236 57 Bacteriophage Bacteriophage NNP cord-256201-vjzfzshh 236 58 T4 T4 NNP cord-256201-vjzfzshh 236 59 by by IN cord-256201-vjzfzshh 236 60 Genetically genetically RB cord-256201-vjzfzshh 236 61 Modified modify VBN cord-256201-vjzfzshh 236 62 DNA DNA NNP cord-256201-vjzfzshh 236 63 Polymerases Polymerases NNP cord-256201-vjzfzshh 236 64 Rates Rates NNPS cord-256201-vjzfzshh 236 65 of of IN cord-256201-vjzfzshh 236 66 Evolutionary Evolutionary NNP cord-256201-vjzfzshh 236 67 Change change NN cord-256201-vjzfzshh 236 68 in in IN cord-256201-vjzfzshh 236 69 Viruses virus NNS cord-256201-vjzfzshh 236 70 : : : cord-256201-vjzfzshh 236 71 Patterns pattern NNS cord-256201-vjzfzshh 236 72 and and CC cord-256201-vjzfzshh 236 73 Determinants Determinants NNPS cord-256201-vjzfzshh 236 74 Host Host NNP cord-256201-vjzfzshh 236 75 and and CC cord-256201-vjzfzshh 236 76 /X174 /X174 NNP cord-256201-vjzfzshh 236 77 Mutations mutation NNS cord-256201-vjzfzshh 236 78 Affecting affect VBG cord-256201-vjzfzshh 236 79 the the DT cord-256201-vjzfzshh 236 80 Morphogenesis Morphogenesis NNP cord-256201-vjzfzshh 236 81 or or CC cord-256201-vjzfzshh 236 82 Stabilization Stabilization NNP cord-256201-vjzfzshh 236 83 of of IN cord-256201-vjzfzshh 236 84 the the DT cord-256201-vjzfzshh 236 85 50S 50s CD cord-256201-vjzfzshh 236 86 Complex Complex NNP cord-256201-vjzfzshh 236 87 , , , cord-256201-vjzfzshh 236 88 a a DT cord-256201-vjzfzshh 236 89 Single Single NNP cord-256201-vjzfzshh 236 90 - - HYPH cord-256201-vjzfzshh 236 91 Stranded strand VBN cord-256201-vjzfzshh 236 92 DNA dna NN cord-256201-vjzfzshh 237 1 Synthesizing synthesize VBG cord-256201-vjzfzshh 237 2 Intermediate Intermediate NNP cord-256201-vjzfzshh 237 3 DNA dna NN cord-256201-vjzfzshh 237 4 Polymerase Polymerase NNP cord-256201-vjzfzshh 237 5 Accuracy Accuracy NNP cord-256201-vjzfzshh 237 6 and and CC cord-256201-vjzfzshh 237 7 Spontaneous Spontaneous NNP cord-256201-vjzfzshh 237 8 Mutation Mutation NNP cord-256201-vjzfzshh 237 9 Rates Rates NNPS cord-256201-vjzfzshh 237 10 : : : cord-256201-vjzfzshh 237 11 Frequencies frequency NNS cord-256201-vjzfzshh 237 12 of of IN cord-256201-vjzfzshh 237 13 Purine Purine NNP cord-256201-vjzfzshh 237 14 . . . cord-256201-vjzfzshh 238 1 Purine Purine NNP cord-256201-vjzfzshh 238 2 , , , cord-256201-vjzfzshh 238 3 Purine Purine NNP cord-256201-vjzfzshh 238 4 . . . cord-256201-vjzfzshh 239 1 Pyrimidine Pyrimidine NNP cord-256201-vjzfzshh 239 2 , , , cord-256201-vjzfzshh 239 3 and and CC cord-256201-vjzfzshh 239 4 Pyrimidine Pyrimidine NNP cord-256201-vjzfzshh 239 5 . . . cord-256201-vjzfzshh 240 1 Pyrimidine Pyrimidine NNP cord-256201-vjzfzshh 240 2 Mismatches mismatch NNS cord-256201-vjzfzshh 240 3 during during IN cord-256201-vjzfzshh 240 4 DNA DNA NNP cord-256201-vjzfzshh 240 5 Replication replication NN cord-256201-vjzfzshh 240 6 DNA dna NN cord-256201-vjzfzshh 240 7 Replication Replication NNP cord-256201-vjzfzshh 240 8 Fidelity Fidelity NNP cord-256201-vjzfzshh 240 9 in in IN cord-256201-vjzfzshh 240 10 Escherichia Escherichia NNP cord-256201-vjzfzshh 240 11 coli coli NNS cord-256201-vjzfzshh 240 12 : : : cord-256201-vjzfzshh 241 1 A a DT cord-256201-vjzfzshh 241 2 Multi multi JJ cord-256201-vjzfzshh 241 3 - - JJ cord-256201-vjzfzshh 241 4 DNA dna NN cord-256201-vjzfzshh 241 5 Polymerase Polymerase NNP cord-256201-vjzfzshh 241 6 Affair Affair NNP cord-256201-vjzfzshh 241 7 Role role NN cord-256201-vjzfzshh 241 8 of of IN cord-256201-vjzfzshh 241 9 RecA RecA NNP cord-256201-vjzfzshh 241 10 and and CC cord-256201-vjzfzshh 241 11 the the DT cord-256201-vjzfzshh 241 12 SOS SOS NNP cord-256201-vjzfzshh 241 13 Response Response NNP cord-256201-vjzfzshh 241 14 in in IN cord-256201-vjzfzshh 241 15 Thymineless Thymineless NNP cord-256201-vjzfzshh 241 16 Death Death NNP cord-256201-vjzfzshh 241 17 in in IN cord-256201-vjzfzshh 241 18 Escherichia Escherichia NNP cord-256201-vjzfzshh 241 19 coli coli NNS cord-256201-vjzfzshh 241 20 DNA dna NN cord-256201-vjzfzshh 241 21 Mismatch mismatch NN cord-256201-vjzfzshh 241 22 Repair repair NN cord-256201-vjzfzshh 241 23 in in IN cord-256201-vjzfzshh 241 24 Eukaryotes eukaryote NNS cord-256201-vjzfzshh 241 25 and and CC cord-256201-vjzfzshh 241 26 Bacteria Bacteria NNPS cord-256201-vjzfzshh 241 27 Mutation Mutation NNP cord-256201-vjzfzshh 241 28 as as IN cord-256201-vjzfzshh 241 29 a a DT cord-256201-vjzfzshh 241 30 Stress Stress NNP cord-256201-vjzfzshh 241 31 Response response NN cord-256201-vjzfzshh 241 32 and and CC cord-256201-vjzfzshh 241 33 the the DT cord-256201-vjzfzshh 241 34 Regulation Regulation NNP cord-256201-vjzfzshh 241 35 of of IN cord-256201-vjzfzshh 241 36 Evolvability Evolvability NNP cord-256201-vjzfzshh 241 37 Mutational Mutational NNP cord-256201-vjzfzshh 241 38 Robustness Robustness NNP cord-256201-vjzfzshh 241 39 of of IN cord-256201-vjzfzshh 241 40 an an DT cord-256201-vjzfzshh 241 41 RNA RNA NNP cord-256201-vjzfzshh 241 42 Virus virus NN cord-256201-vjzfzshh 241 43 Influences influence VBZ cord-256201-vjzfzshh 241 44 Sensitivity Sensitivity NNP cord-256201-vjzfzshh 241 45 to to IN cord-256201-vjzfzshh 241 46 Lethal Lethal NNP cord-256201-vjzfzshh 241 47 Mutagenesis Mutagenesis NNP cord-256201-vjzfzshh 241 48 Characterization characterization NN cord-256201-vjzfzshh 241 49 of of IN cord-256201-vjzfzshh 241 50 the the DT cord-256201-vjzfzshh 241 51 Host Host NNP cord-256201-vjzfzshh 241 52 Factors Factors NNP cord-256201-vjzfzshh 241 53 Required require VBN cord-256201-vjzfzshh 241 54 for for IN cord-256201-vjzfzshh 241 55 Hepadnavirus Hepadnavirus NNP cord-256201-vjzfzshh 241 56 Covalently Covalently NNP cord-256201-vjzfzshh 241 57 Closed Closed NNP cord-256201-vjzfzshh 241 58 Circular Circular NNP cord-256201-vjzfzshh 241 59 ( ( -LRB- cord-256201-vjzfzshh 241 60 ccc ccc NNP cord-256201-vjzfzshh 241 61 ) ) -RRB- cord-256201-vjzfzshh 241 62 DNA DNA NNP cord-256201-vjzfzshh 241 63 Formation Formation NNP cord-256201-vjzfzshh 241 64 Impacts impact NNS cord-256201-vjzfzshh 241 65 of of IN cord-256201-vjzfzshh 241 66 Mutation mutation NN cord-256201-vjzfzshh 241 67 Effects Effects NNPS cord-256201-vjzfzshh 241 68 and and CC cord-256201-vjzfzshh 241 69 Population Population NNP cord-256201-vjzfzshh 241 70 Size Size NNP cord-256201-vjzfzshh 241 71 on on IN cord-256201-vjzfzshh 241 72 Mutation mutation NN cord-256201-vjzfzshh 241 73 Rate rate NN cord-256201-vjzfzshh 241 74 in in IN cord-256201-vjzfzshh 241 75 Asexual asexual JJ cord-256201-vjzfzshh 241 76 Populations Populations NNPS cord-256201-vjzfzshh 241 77 : : : cord-256201-vjzfzshh 242 1 A a DT cord-256201-vjzfzshh 242 2 Simulation Simulation NNP cord-256201-vjzfzshh 242 3 Study Study NNP cord-256201-vjzfzshh 242 4 Postreplicative Postreplicative NNP cord-256201-vjzfzshh 242 5 Mismatch mismatch NN cord-256201-vjzfzshh 242 6 Repair repair NN cord-256201-vjzfzshh 243 1 The the DT cord-256201-vjzfzshh 243 2 Effect effect NN cord-256201-vjzfzshh 243 3 of of IN cord-256201-vjzfzshh 243 4 Deleterious deleterious JJ cord-256201-vjzfzshh 243 5 Alleles Alleles NNPS cord-256201-vjzfzshh 243 6 on on IN cord-256201-vjzfzshh 243 7 Adaptation Adaptation NNP cord-256201-vjzfzshh 243 8 in in IN cord-256201-vjzfzshh 243 9 Asexual Asexual NNP cord-256201-vjzfzshh 243 10 Populations Populations NNPS cord-256201-vjzfzshh 244 1 Bacterial bacterial JJ cord-256201-vjzfzshh 244 2 Hypermutation Hypermutation NNP cord-256201-vjzfzshh 244 3 : : : cord-256201-vjzfzshh 245 1 Clinical clinical JJ cord-256201-vjzfzshh 245 2 implications implication NNS cord-256201-vjzfzshh 245 3 Repair Repair NNP cord-256201-vjzfzshh 245 4 of of IN cord-256201-vjzfzshh 245 5 a a DT cord-256201-vjzfzshh 245 6 Mismatch mismatch NN cord-256201-vjzfzshh 245 7 is be VBZ cord-256201-vjzfzshh 245 8 Influenced influence VBN cord-256201-vjzfzshh 245 9 by by IN cord-256201-vjzfzshh 245 10 the the DT cord-256201-vjzfzshh 245 11 Base Base NNP cord-256201-vjzfzshh 245 12 Composition Composition NNP cord-256201-vjzfzshh 245 13 of of IN cord-256201-vjzfzshh 245 14 the the DT cord-256201-vjzfzshh 245 15 Surrounding surround VBG cord-256201-vjzfzshh 245 16 Nucleotide Nucleotide NNP cord-256201-vjzfzshh 245 17 Sequence sequence NN cord-256201-vjzfzshh 246 1 Error error NN cord-256201-vjzfzshh 246 2 - - HYPH cord-256201-vjzfzshh 246 3 Prone prone JJ cord-256201-vjzfzshh 246 4 DNA dna NN cord-256201-vjzfzshh 246 5 Polymerase polymerase NN cord-256201-vjzfzshh 246 6 IV IV NNP cord-256201-vjzfzshh 246 7 is be VBZ cord-256201-vjzfzshh 246 8 Regulated regulate VBN cord-256201-vjzfzshh 246 9 by by IN cord-256201-vjzfzshh 246 10 the the DT cord-256201-vjzfzshh 246 11 Heat Heat NNP cord-256201-vjzfzshh 246 12 Shock Shock NNP cord-256201-vjzfzshh 246 13 Chaperone Chaperone NNP cord-256201-vjzfzshh 246 14 GroE GroE NNP cord-256201-vjzfzshh 246 15 in in IN cord-256201-vjzfzshh 246 16 Escherichia Escherichia NNP cord-256201-vjzfzshh 246 17 coli coli VBZ cord-256201-vjzfzshh 246 18 High High NNP cord-256201-vjzfzshh 246 19 Mutation Mutation NNP cord-256201-vjzfzshh 246 20 Frequencies Frequencies NNPS cord-256201-vjzfzshh 246 21 among among IN cord-256201-vjzfzshh 246 22 Escherichia Escherichia NNP cord-256201-vjzfzshh 246 23 coli coli NNS cord-256201-vjzfzshh 246 24 and and CC cord-256201-vjzfzshh 246 25 Salmonella Salmonella NNP cord-256201-vjzfzshh 246 26 Pathogens Pathogens NNPS cord-256201-vjzfzshh 246 27 Rate Rate NNP cord-256201-vjzfzshh 246 28 and and CC cord-256201-vjzfzshh 246 29 Molecular Molecular NNP cord-256201-vjzfzshh 246 30 Spectrum Spectrum NNP cord-256201-vjzfzshh 246 31 of of IN cord-256201-vjzfzshh 246 32 Spontaneous Spontaneous NNP cord-256201-vjzfzshh 246 33 Mutations Mutations NNPS cord-256201-vjzfzshh 246 34 in in IN cord-256201-vjzfzshh 246 35 the the DT cord-256201-vjzfzshh 246 36 Bacterium bacterium NN cord-256201-vjzfzshh 246 37 Escherichia Escherichia NNP cord-256201-vjzfzshh 246 38 coli coli NNS cord-256201-vjzfzshh 246 39 as as IN cord-256201-vjzfzshh 246 40 Determined determine VBN cord-256201-vjzfzshh 246 41 by by IN cord-256201-vjzfzshh 246 42 Whole Whole NNP cord-256201-vjzfzshh 246 43 - - HYPH cord-256201-vjzfzshh 246 44 Genome Genome NNP cord-256201-vjzfzshh 246 45 Sequencing Sequencing NNP cord-256201-vjzfzshh 246 46 Mechanisms Mechanisms NNPS cord-256201-vjzfzshh 246 47 and and CC cord-256201-vjzfzshh 246 48 Functions Functions NNPS cord-256201-vjzfzshh 246 49 of of IN cord-256201-vjzfzshh 246 50 DNA dna NN cord-256201-vjzfzshh 246 51 Mismatch mismatch NN cord-256201-vjzfzshh 246 52 Repair repair NN cord-256201-vjzfzshh 246 53 Viruses virus NNS cord-256201-vjzfzshh 246 54 and and CC cord-256201-vjzfzshh 246 55 the the DT cord-256201-vjzfzshh 246 56 DNA DNA NNP cord-256201-vjzfzshh 246 57 Damage damage NN cord-256201-vjzfzshh 246 58 Response response NN cord-256201-vjzfzshh 246 59 : : : cord-256201-vjzfzshh 247 1 Activation activation NN cord-256201-vjzfzshh 247 2 and and CC cord-256201-vjzfzshh 247 3 Antagonism antagonism NN cord-256201-vjzfzshh 248 1 The the DT cord-256201-vjzfzshh 248 2 Lower low JJR cord-256201-vjzfzshh 248 3 Bound Bound NNP cord-256201-vjzfzshh 248 4 to to IN cord-256201-vjzfzshh 248 5 the the DT cord-256201-vjzfzshh 248 6 Evolution evolution NN cord-256201-vjzfzshh 248 7 of of IN cord-256201-vjzfzshh 249 1 Mutation mutation NN cord-256201-vjzfzshh 249 2 Rates rate NNS cord-256201-vjzfzshh 249 3 Mutations mutation NNS cord-256201-vjzfzshh 249 4 Arising arise VBG cord-256201-vjzfzshh 249 5 during during IN cord-256201-vjzfzshh 249 6 Repair Repair NNP cord-256201-vjzfzshh 249 7 of of IN cord-256201-vjzfzshh 249 8 Chromosome Chromosome NNP cord-256201-vjzfzshh 249 9 Breaks Breaks NNP cord-256201-vjzfzshh 249 10 Virus Virus NNP cord-256201-vjzfzshh 249 11 Mutators Mutators NNP cord-256201-vjzfzshh 249 12 and and CC cord-256201-vjzfzshh 249 13 antimUtators antimutator NNS cord-256201-vjzfzshh 249 14 : : : cord-256201-vjzfzshh 250 1 Roles role NNS cord-256201-vjzfzshh 250 2 in in IN cord-256201-vjzfzshh 250 3 Evolution Evolution NNP cord-256201-vjzfzshh 250 4 , , , cord-256201-vjzfzshh 250 5 Pathogenesis Pathogenesis NNP cord-256201-vjzfzshh 250 6 and and CC cord-256201-vjzfzshh 250 7 Emergence Emergence NNP cord-256201-vjzfzshh 250 8 DNA DNA NNP cord-256201-vjzfzshh 250 9 Methylation Methylation NNP cord-256201-vjzfzshh 250 10 and and CC cord-256201-vjzfzshh 250 11 Mutator Mutator NNP cord-256201-vjzfzshh 250 12 Genes Genes NNPS cord-256201-vjzfzshh 250 13 in in IN cord-256201-vjzfzshh 250 14 Escherichia Escherichia NNP cord-256201-vjzfzshh 250 15 coli coli VBZ cord-256201-vjzfzshh 250 16 K-12 K-12 NNP cord-256201-vjzfzshh 250 17 DNA dna NN cord-256201-vjzfzshh 250 18 Mismatch mismatch NN cord-256201-vjzfzshh 250 19 Repair Repair NNP cord-256201-vjzfzshh 250 20 and and CC cord-256201-vjzfzshh 250 21 Mutation Mutation NNP cord-256201-vjzfzshh 250 22 Avoidance Avoidance NNP cord-256201-vjzfzshh 250 23 Pathways Pathways NNPS cord-256201-vjzfzshh 250 24 Selection Selection NNP cord-256201-vjzfzshh 250 25 against against IN cord-256201-vjzfzshh 250 26 Dam Dam NNP cord-256201-vjzfzshh 250 27 Methylation Methylation NNP cord-256201-vjzfzshh 250 28 Sites site NNS cord-256201-vjzfzshh 250 29 in in IN cord-256201-vjzfzshh 250 30 the the DT cord-256201-vjzfzshh 250 31 Genomes Genomes NNPS cord-256201-vjzfzshh 250 32 of of IN cord-256201-vjzfzshh 250 33 DNA DNA NNP cord-256201-vjzfzshh 250 34 of of IN cord-256201-vjzfzshh 250 35 Enterobacteriophages Enterobacteriophages NNP cord-256201-vjzfzshh 250 36 Mutation Mutation NNP cord-256201-vjzfzshh 250 37 Rates Rates NNPS cord-256201-vjzfzshh 250 38 and and CC cord-256201-vjzfzshh 250 39 Intrinsic Intrinsic NNP cord-256201-vjzfzshh 250 40 Fidelity Fidelity NNP cord-256201-vjzfzshh 250 41 of of IN cord-256201-vjzfzshh 250 42 Retroviral Retroviral NNP cord-256201-vjzfzshh 250 43 Reverse Reverse NNP cord-256201-vjzfzshh 250 44 Transcriptases Transcriptases NNPS cord-256201-vjzfzshh 250 45 Mismatch mismatch NN cord-256201-vjzfzshh 250 46 Repair repair NN cord-256201-vjzfzshh 250 47 in in IN cord-256201-vjzfzshh 250 48 Replication Replication NNP cord-256201-vjzfzshh 250 49 Fidelity Fidelity NNP cord-256201-vjzfzshh 250 50 , , , cord-256201-vjzfzshh 250 51 Genetic Genetic NNP cord-256201-vjzfzshh 250 52 Recombination Recombination NNP cord-256201-vjzfzshh 250 53 , , , cord-256201-vjzfzshh 250 54 and and CC cord-256201-vjzfzshh 250 55 Cancer Cancer NNP cord-256201-vjzfzshh 250 56 Biology Biology NNP cord-256201-vjzfzshh 251 1 The the DT cord-256201-vjzfzshh 251 2 Rate rate NN cord-256201-vjzfzshh 251 3 of of IN cord-256201-vjzfzshh 251 4 Adaptation adaptation NN cord-256201-vjzfzshh 251 5 in in IN cord-256201-vjzfzshh 251 6 Asexuals Asexuals NNPS cord-256201-vjzfzshh 251 7 Delayed delay VBN cord-256201-vjzfzshh 251 8 Lysis lysis NN cord-256201-vjzfzshh 251 9 Confers confer VBZ cord-256201-vjzfzshh 251 10 Resistance resistance NN cord-256201-vjzfzshh 251 11 to to IN cord-256201-vjzfzshh 251 12 the the DT cord-256201-vjzfzshh 251 13 Nucleoside Nucleoside NNP cord-256201-vjzfzshh 251 14 Analogue Analogue NNP cord-256201-vjzfzshh 251 15 5-Fluorouracil 5-Fluorouracil NNP cord-256201-vjzfzshh 251 16 and and CC cord-256201-vjzfzshh 251 17 Alleviates alleviate VBZ cord-256201-vjzfzshh 251 18 Mutation Mutation NNP cord-256201-vjzfzshh 251 19 Accumulation Accumulation NNP cord-256201-vjzfzshh 251 20 in in IN cord-256201-vjzfzshh 251 21 the the DT cord-256201-vjzfzshh 251 22 Single Single NNP cord-256201-vjzfzshh 251 23 - - HYPH cord-256201-vjzfzshh 251 24 Stranded stranded JJ cord-256201-vjzfzshh 251 25 DNA dna NN cord-256201-vjzfzshh 251 26 Bacteriophage Bacteriophage NNP cord-256201-vjzfzshh 251 27 /X174 /X174 , cord-256201-vjzfzshh 251 28 ' ' '' cord-256201-vjzfzshh 251 29 A a DT cord-256201-vjzfzshh 251 30 Single Single NNP cord-256201-vjzfzshh 251 31 Mutation Mutation NNP cord-256201-vjzfzshh 251 32 in in IN cord-256201-vjzfzshh 251 33 Poliovirus Poliovirus NNP cord-256201-vjzfzshh 251 34 RNA RNA NNP cord-256201-vjzfzshh 251 35 - - HYPH cord-256201-vjzfzshh 251 36 Dependent Dependent NNP cord-256201-vjzfzshh 251 37 RNA RNA NNP cord-256201-vjzfzshh 251 38 Polymerase Polymerase NNP cord-256201-vjzfzshh 251 39 Confers confer VBZ cord-256201-vjzfzshh 251 40 Resistance resistance NN cord-256201-vjzfzshh 251 41 to to IN cord-256201-vjzfzshh 251 42 Mutagenic Mutagenic NNP cord-256201-vjzfzshh 251 43 Nucleotide Nucleotide NNP cord-256201-vjzfzshh 251 44 Analogs Analogs NNP cord-256201-vjzfzshh 251 45 via via IN cord-256201-vjzfzshh 251 46 Increased increase VBN cord-256201-vjzfzshh 251 47 Fidelity Fidelity NNP cord-256201-vjzfzshh 251 48 Effects effect NNS cord-256201-vjzfzshh 251 49 of of IN cord-256201-vjzfzshh 251 50 High high JJ cord-256201-vjzfzshh 251 51 Levels level NNS cord-256201-vjzfzshh 251 52 of of IN cord-256201-vjzfzshh 251 53 DNA dna NN cord-256201-vjzfzshh 251 54 Adenine Adenine NNP cord-256201-vjzfzshh 251 55 Methylation Methylation NNP cord-256201-vjzfzshh 251 56 on on IN cord-256201-vjzfzshh 251 57 Methyl Methyl NNP cord-256201-vjzfzshh 251 58 - - HYPH cord-256201-vjzfzshh 251 59 Directed direct VBN cord-256201-vjzfzshh 251 60 Mismatch Mismatch NNP cord-256201-vjzfzshh 251 61 Repair Repair NNP cord-256201-vjzfzshh 251 62 in in IN cord-256201-vjzfzshh 251 63 Escherichia Escherichia NNP cord-256201-vjzfzshh 251 64 coli coli VBZ cord-256201-vjzfzshh 251 65 Isolation isolation NN cord-256201-vjzfzshh 251 66 and and CC cord-256201-vjzfzshh 251 67 Characterization characterization NN cord-256201-vjzfzshh 251 68 of of IN cord-256201-vjzfzshh 251 69 Escherichia Escherichia NNP cord-256201-vjzfzshh 251 70 coli coli VBZ cord-256201-vjzfzshh 251 71 Antimutators Antimutators NNP cord-256201-vjzfzshh 251 72 ' ' POS cord-256201-vjzfzshh 251 73 , , . cord-256201-vjzfzshh 252 1 A a DT cord-256201-vjzfzshh 252 2 New New NNP cord-256201-vjzfzshh 252 3 Strategy Strategy NNP cord-256201-vjzfzshh 252 4 to to TO cord-256201-vjzfzshh 252 5 Study study VB cord-256201-vjzfzshh 252 6 the the DT cord-256201-vjzfzshh 252 7 Nature Nature NNP cord-256201-vjzfzshh 252 8 and and CC cord-256201-vjzfzshh 252 9 Origin Origin NNP cord-256201-vjzfzshh 252 10 of of IN cord-256201-vjzfzshh 252 11 Spontaneous Spontaneous NNP cord-256201-vjzfzshh 252 12 Mutations Mutations NNPS cord-256201-vjzfzshh 252 13 Spontaneous Spontaneous NNP cord-256201-vjzfzshh 252 14 Mutant Mutant NNP cord-256201-vjzfzshh 252 15 Frequency Frequency NNP cord-256201-vjzfzshh 252 16 and and CC cord-256201-vjzfzshh 252 17 Mutation Mutation NNP cord-256201-vjzfzshh 252 18 Spectrum Spectrum NNP cord-256201-vjzfzshh 252 19 for for IN cord-256201-vjzfzshh 252 20 The the DT cord-256201-vjzfzshh 252 21 Accuracy Accuracy NNP cord-256201-vjzfzshh 252 22 of of IN cord-256201-vjzfzshh 252 23 Reverse Reverse NNP cord-256201-vjzfzshh 252 24 Transcriptase Transcriptase NNP cord-256201-vjzfzshh 252 25 from from IN cord-256201-vjzfzshh 252 26 HIV-1 HIV-1 NNP cord-256201-vjzfzshh 252 27 Evolving evolve VBG cord-256201-vjzfzshh 252 28 Responsively responsively RB cord-256201-vjzfzshh 252 29 : : : cord-256201-vjzfzshh 252 30 Adaptive Adaptive NNP cord-256201-vjzfzshh 252 31 Mutation Mutation NNP cord-256201-vjzfzshh 252 32 ' ' POS cord-256201-vjzfzshh 252 33 Viral Viral NNP cord-256201-vjzfzshh 252 34 Mutation Mutation NNP cord-256201-vjzfzshh 252 35 Rates Rates NNPS cord-256201-vjzfzshh 252 36 Antimutator Antimutator NNP cord-256201-vjzfzshh 252 37 Mutants Mutants NNPS cord-256201-vjzfzshh 252 38 in in IN cord-256201-vjzfzshh 252 39 Bacteriophage Bacteriophage NNP cord-256201-vjzfzshh 252 40 T4 T4 NNP cord-256201-vjzfzshh 252 41 and and CC cord-256201-vjzfzshh 252 42 Escherichia Escherichia NNP cord-256201-vjzfzshh 252 43 coli coli VBZ cord-256201-vjzfzshh 252 44 DNA dna NN cord-256201-vjzfzshh 252 45 Mismatch mismatch NN cord-256201-vjzfzshh 252 46 Repair repair NN cord-256201-vjzfzshh 252 47 : : : cord-256201-vjzfzshh 253 1 Molecular Molecular NNP cord-256201-vjzfzshh 253 2 Mechanisms Mechanisms NNPS cord-256201-vjzfzshh 253 3 and and CC cord-256201-vjzfzshh 253 4 Biological Biological NNP cord-256201-vjzfzshh 253 5 Function Function NNP cord-256201-vjzfzshh 254 1 Coronaviruses Coronaviruses NNP cord-256201-vjzfzshh 255 1 Lacking lack VBG cord-256201-vjzfzshh 255 2 Exoribonuclease Exoribonuclease NNP cord-256201-vjzfzshh 255 3 Activity Activity NNP cord-256201-vjzfzshh 255 4 are be VBP cord-256201-vjzfzshh 255 5 Susceptible susceptible JJ cord-256201-vjzfzshh 255 6 to to IN cord-256201-vjzfzshh 255 7 lethal lethal JJ cord-256201-vjzfzshh 255 8 Mutagenesis Mutagenesis NNP cord-256201-vjzfzshh 255 9 : : : cord-256201-vjzfzshh 256 1 Evidence evidence NN cord-256201-vjzfzshh 256 2 for for IN cord-256201-vjzfzshh 256 3 Proofreading Proofreading NNP cord-256201-vjzfzshh 256 4 and and CC cord-256201-vjzfzshh 256 5 Potential Potential NNP cord-256201-vjzfzshh 256 6 Therapeutics Therapeutics NNPS cord-256201-vjzfzshh 256 7 Evolution Evolution NNP cord-256201-vjzfzshh 256 8 of of IN cord-256201-vjzfzshh 256 9 High High NNP cord-256201-vjzfzshh 256 10 Mutation Mutation NNP cord-256201-vjzfzshh 256 11 Rates Rates NNPS cord-256201-vjzfzshh 256 12 in in IN cord-256201-vjzfzshh 256 13 Experimental Experimental NNP cord-256201-vjzfzshh 256 14 Populations Populations NNPS cord-256201-vjzfzshh 256 15 of of IN cord-256201-vjzfzshh 256 16 E. E. NNP cord-256201-vjzfzshh 256 17 coli coli NNS cord-256201-vjzfzshh 256 18 Lack lack NN cord-256201-vjzfzshh 256 19 of of IN cord-256201-vjzfzshh 256 20 Evidence evidence NN cord-256201-vjzfzshh 256 21 for for IN cord-256201-vjzfzshh 256 22 Proofreading proofreading NN cord-256201-vjzfzshh 256 23 Mechanisms Mechanisms NNPS cord-256201-vjzfzshh 257 1 Associated associate VBN cord-256201-vjzfzshh 257 2 with with IN cord-256201-vjzfzshh 257 3 an an DT cord-256201-vjzfzshh 257 4 RNA RNA NNP cord-256201-vjzfzshh 257 5 Virus virus NN cord-256201-vjzfzshh 257 6 Polymerase Polymerase NNP cord-256201-vjzfzshh 257 7 Drift Drift NNP cord-256201-vjzfzshh 257 8 - - HYPH cord-256201-vjzfzshh 257 9 Barrier Barrier NNP cord-256201-vjzfzshh 257 10 Hypothesis Hypothesis NNP cord-256201-vjzfzshh 257 11 and and CC cord-256201-vjzfzshh 257 12 Mutation Mutation NNP cord-256201-vjzfzshh 257 13 - - HYPH cord-256201-vjzfzshh 257 14 Rate Rate NNP cord-256201-vjzfzshh 257 15 Evolution Evolution NNP cord-256201-vjzfzshh 257 16 Conversion conversion NN cord-256201-vjzfzshh 257 17 of of IN cord-256201-vjzfzshh 257 18 /X174 /X174 NFP cord-256201-vjzfzshh 257 19 Viral Viral NNP cord-256201-vjzfzshh 257 20 DNA DNA NNP cord-256201-vjzfzshh 257 21 to to IN cord-256201-vjzfzshh 257 22 Double double JJ cord-256201-vjzfzshh 257 23 - - HYPH cord-256201-vjzfzshh 257 24 Stranded strand VBN cord-256201-vjzfzshh 257 25 Form form NN cord-256201-vjzfzshh 257 26 by by IN cord-256201-vjzfzshh 257 27 Purified Purified NNP cord-256201-vjzfzshh 257 28 Escherichia Escherichia NNP cord-256201-vjzfzshh 257 29 coli coli NNS cord-256201-vjzfzshh 257 30 Proteins protein NNS cord-256201-vjzfzshh 258 1 We -PRON- PRP cord-256201-vjzfzshh 258 2 thank thank VBP cord-256201-vjzfzshh 258 3 Silvia Silvia NNP cord-256201-vjzfzshh 258 4 Torres Torres NNP cord-256201-vjzfzshh 258 5 and and CC cord-256201-vjzfzshh 258 6 Pablo Pablo NNP cord-256201-vjzfzshh 258 7 Herná Herná NNP cord-256201-vjzfzshh 258 8 ndez ndez NN cord-256201-vjzfzshh 258 9 for for IN cord-256201-vjzfzshh 258 10 technical technical JJ cord-256201-vjzfzshh 258 11 assistance assistance NN cord-256201-vjzfzshh 258 12 . . . cord-256201-vjzfzshh 259 1 This this DT cord-256201-vjzfzshh 259 2 work work NN cord-256201-vjzfzshh 259 3 was be VBD cord-256201-vjzfzshh 259 4 supported support VBN cord-256201-vjzfzshh 259 5 by by IN cord-256201-vjzfzshh 259 6 grants grant NNS cord-256201-vjzfzshh 259 7 from from IN cord-256201-vjzfzshh 259 8 the the DT cord-256201-vjzfzshh 259 9 Spanish spanish JJ cord-256201-vjzfzshh 259 10 MINECO MINECO NNS cord-256201-vjzfzshh 260 1 ( ( -LRB- cord-256201-vjzfzshh 260 2 BFU2013 BFU2013 NNP cord-256201-vjzfzshh 260 3 - - HYPH cord-256201-vjzfzshh 260 4 41329 41329 CD cord-256201-vjzfzshh 260 5 ) ) -RRB- cord-256201-vjzfzshh 260 6 and and CC cord-256201-vjzfzshh 260 7 the the DT cord-256201-vjzfzshh 260 8 European European NNP cord-256201-vjzfzshh 260 9 Research Research NNP cord-256201-vjzfzshh 260 10 Council Council NNP cord-256201-vjzfzshh 260 11 ( ( -LRB- cord-256201-vjzfzshh 260 12 ERC-2011-StG-281191-VIRMUT ERC-2011-StG-281191-VIRMUT NNP cord-256201-vjzfzshh 260 13 ) ) -RRB- cord-256201-vjzfzshh 260 14 to to IN cord-256201-vjzfzshh 260 15 R.S. R.S. NNP cord-256201-vjzfzshh 260 16 , , , cord-256201-vjzfzshh 260 17 and and CC cord-256201-vjzfzshh 260 18 by by IN cord-256201-vjzfzshh 260 19 a a DT cord-256201-vjzfzshh 260 20 Ph.D. ph.d. NN cord-256201-vjzfzshh 260 21 fellowship fellowship NN cord-256201-vjzfzshh 260 22 from from IN cord-256201-vjzfzshh 260 23 the the DT cord-256201-vjzfzshh 260 24 Spanish spanish JJ cord-256201-vjzfzshh 260 25 Ministerio Ministerio NNP cord-256201-vjzfzshh 260 26 de de NNP cord-256201-vjzfzshh 260 27 Educació Educació NNP cord-256201-vjzfzshh 260 28 n n NNP cord-256201-vjzfzshh 260 29 to to IN cord-256201-vjzfzshh 260 30 M.P.-G. M.P.-G. NNP cord-256201-vjzfzshh 261 1 Data datum NNS cord-256201-vjzfzshh 261 2 are be VBP cord-256201-vjzfzshh 261 3 available available JJ cord-256201-vjzfzshh 261 4 on on IN cord-256201-vjzfzshh 261 5 request request NN cord-256201-vjzfzshh 261 6 . . . cord-256201-vjzfzshh 262 1 Conflict conflict NN cord-256201-vjzfzshh 262 2 of of IN cord-256201-vjzfzshh 262 3 interest interest NN cord-256201-vjzfzshh 262 4 : : : cord-256201-vjzfzshh 262 5 None none NN cord-256201-vjzfzshh 262 6 declared declare VBD cord-256201-vjzfzshh 262 7 . . .