id sid tid token lemma pos cord-016808-gy8d8285 1 1 key key JJ cord-016808-gy8d8285 1 2 : : : cord-016808-gy8d8285 1 3 cord-016808-gy8d8285 cord-016808-gy8d8285 JJ cord-016808-gy8d8285 1 4 authors author NNS cord-016808-gy8d8285 1 5 : : : cord-016808-gy8d8285 2 1 Agol Agol NNP cord-016808-gy8d8285 2 2 , , , cord-016808-gy8d8285 2 3 Vadim Vadim NNP cord-016808-gy8d8285 2 4 I. I. NNP cord-016808-gy8d8285 2 5 title title NN cord-016808-gy8d8285 2 6 : : : cord-016808-gy8d8285 3 1 The the DT cord-016808-gy8d8285 3 2 Origin Origin NNP cord-016808-gy8d8285 3 3 and and CC cord-016808-gy8d8285 3 4 Evolution Evolution NNP cord-016808-gy8d8285 3 5 of of IN cord-016808-gy8d8285 3 6 Viruses virus NNS cord-016808-gy8d8285 3 7 date date NN cord-016808-gy8d8285 3 8 : : : cord-016808-gy8d8285 3 9 2008 2008 CD cord-016808-gy8d8285 3 10 journal journal NN cord-016808-gy8d8285 3 11 : : : cord-016808-gy8d8285 3 12 Evolution evolution NN cord-016808-gy8d8285 3 13 from from IN cord-016808-gy8d8285 3 14 Cellular Cellular NNP cord-016808-gy8d8285 3 15 to to IN cord-016808-gy8d8285 3 16 Social Social NNP cord-016808-gy8d8285 3 17 Scales Scales NNP cord-016808-gy8d8285 3 18 DOI DOI NNP cord-016808-gy8d8285 3 19 : : : cord-016808-gy8d8285 3 20 10.1007/978 10.1007/978 CD cord-016808-gy8d8285 3 21 - - HYPH cord-016808-gy8d8285 3 22 1 1 CD cord-016808-gy8d8285 3 23 - - HYPH cord-016808-gy8d8285 3 24 4020 4020 CD cord-016808-gy8d8285 3 25 - - HYPH cord-016808-gy8d8285 3 26 8761 8761 CD cord-016808-gy8d8285 3 27 - - HYPH cord-016808-gy8d8285 3 28 5_7 5_7 CD cord-016808-gy8d8285 3 29 sha sha NNP cord-016808-gy8d8285 3 30 : : : cord-016808-gy8d8285 3 31 146cde561d25d0dd4d014066152cf2103ec8be82 146cde561d25d0dd4d014066152cf2103ec8be82 CD cord-016808-gy8d8285 3 32 doc_id doc_id CD cord-016808-gy8d8285 3 33 : : : cord-016808-gy8d8285 3 34 16808 16808 CD cord-016808-gy8d8285 3 35 cord_uid cord_uid NNS cord-016808-gy8d8285 3 36 : : : cord-016808-gy8d8285 4 1 gy8d8285 gy8d8285 NNP cord-016808-gy8d8285 5 1 The the DT cord-016808-gy8d8285 5 2 lecture lecture NN cord-016808-gy8d8285 5 3 covers cover VBZ cord-016808-gy8d8285 5 4 three three CD cord-016808-gy8d8285 5 5 main main JJ cord-016808-gy8d8285 5 6 topics topic NNS cord-016808-gy8d8285 5 7 : : : cord-016808-gy8d8285 5 8 ( ( -LRB- cord-016808-gy8d8285 5 9 i i NN cord-016808-gy8d8285 5 10 ) ) -RRB- cord-016808-gy8d8285 5 11 Viruses virus NNS cord-016808-gy8d8285 5 12 : : : cord-016808-gy8d8285 5 13 properties property NNS cord-016808-gy8d8285 5 14 , , , cord-016808-gy8d8285 5 15 place place VB cord-016808-gy8d8285 5 16 in in IN cord-016808-gy8d8285 5 17 the the DT cord-016808-gy8d8285 5 18 living live VBG cord-016808-gy8d8285 5 19 world world NN cord-016808-gy8d8285 5 20 , , , cord-016808-gy8d8285 5 21 and and CC cord-016808-gy8d8285 5 22 possible possible JJ cord-016808-gy8d8285 5 23 origin origin NN cord-016808-gy8d8285 5 24 ; ; , cord-016808-gy8d8285 5 25 ( ( -LRB- cord-016808-gy8d8285 5 26 ii ii NN cord-016808-gy8d8285 5 27 ) ) -RRB- cord-016808-gy8d8285 5 28 Molecular molecular JJ cord-016808-gy8d8285 5 29 basis basis NN cord-016808-gy8d8285 5 30 of of IN cord-016808-gy8d8285 5 31 viral viral JJ cord-016808-gy8d8285 5 32 variability variability NN cord-016808-gy8d8285 5 33 and and CC cord-016808-gy8d8285 5 34 evolution evolution NN cord-016808-gy8d8285 5 35 ; ; , cord-016808-gy8d8285 5 36 and and CC cord-016808-gy8d8285 5 37 ( ( -LRB- cord-016808-gy8d8285 5 38 iii iii NN cord-016808-gy8d8285 5 39 ) ) -RRB- cord-016808-gy8d8285 5 40 Evolution evolution NN cord-016808-gy8d8285 5 41 of of IN cord-016808-gy8d8285 5 42 viral viral JJ cord-016808-gy8d8285 5 43 pathogenicity pathogenicity NN cord-016808-gy8d8285 5 44 and and CC cord-016808-gy8d8285 5 45 emerging emerge VBG cord-016808-gy8d8285 5 46 viral viral JJ cord-016808-gy8d8285 5 47 infections infection NNS cord-016808-gy8d8285 5 48 . . . cord-016808-gy8d8285 6 1 or or CC cord-016808-gy8d8285 6 2 circular circular JJ cord-016808-gy8d8285 6 3 structures structure NNS cord-016808-gy8d8285 6 4 . . . cord-016808-gy8d8285 7 1 The the DT cord-016808-gy8d8285 7 2 number number NN cord-016808-gy8d8285 7 3 of of IN cord-016808-gy8d8285 7 4 viral viral JJ cord-016808-gy8d8285 7 5 genes gene NNS cord-016808-gy8d8285 7 6 may may MD cord-016808-gy8d8285 7 7 vary vary VB cord-016808-gy8d8285 7 8 from from IN cord-016808-gy8d8285 7 9 one one CD cord-016808-gy8d8285 7 10 ( ( -LRB- cord-016808-gy8d8285 7 11 e.g. e.g. RB cord-016808-gy8d8285 7 12 , , , cord-016808-gy8d8285 7 13 in in IN cord-016808-gy8d8285 7 14 hepatitis hepatitis NNP cord-016808-gy8d8285 7 15 delta delta NNP cord-016808-gy8d8285 7 16 virus virus NN cord-016808-gy8d8285 7 17 ) ) -RRB- cord-016808-gy8d8285 7 18 to to IN cord-016808-gy8d8285 7 19 ∼1,200 ∼1,200 NNP cord-016808-gy8d8285 7 20 ( ( -LRB- cord-016808-gy8d8285 7 21 in in IN cord-016808-gy8d8285 7 22 mimivirus mimivirus NNP cord-016808-gy8d8285 7 23 ) ) -RRB- cord-016808-gy8d8285 7 24 . . . cord-016808-gy8d8285 8 1 In in IN cord-016808-gy8d8285 8 2 the the DT cord-016808-gy8d8285 8 3 latter latter JJ cord-016808-gy8d8285 8 4 case case NN cord-016808-gy8d8285 8 5 , , , cord-016808-gy8d8285 8 6 the the DT cord-016808-gy8d8285 8 7 size size NN cord-016808-gy8d8285 8 8 of of IN cord-016808-gy8d8285 8 9 the the DT cord-016808-gy8d8285 8 10 viral viral JJ cord-016808-gy8d8285 8 11 genome genome NN cord-016808-gy8d8285 8 12 is be VBZ cord-016808-gy8d8285 8 13 several several JJ cord-016808-gy8d8285 8 14 - - HYPH cord-016808-gy8d8285 8 15 fold fold VB cord-016808-gy8d8285 8 16 larger large JJR cord-016808-gy8d8285 8 17 than than IN cord-016808-gy8d8285 8 18 that that DT cord-016808-gy8d8285 8 19 in in IN cord-016808-gy8d8285 8 20 the the DT cord-016808-gy8d8285 8 21 smallest small JJS cord-016808-gy8d8285 8 22 cellular cellular JJ cord-016808-gy8d8285 8 23 organisms organism NNS cord-016808-gy8d8285 8 24 . . . cord-016808-gy8d8285 9 1 A a DT cord-016808-gy8d8285 9 2 distinctive distinctive JJ cord-016808-gy8d8285 9 3 property property NN cord-016808-gy8d8285 9 4 of of IN cord-016808-gy8d8285 9 5 viruses virus NNS cord-016808-gy8d8285 9 6 is be VBZ cord-016808-gy8d8285 9 7 the the DT cord-016808-gy8d8285 9 8 absence absence NN cord-016808-gy8d8285 9 9 of of IN cord-016808-gy8d8285 9 10 protein protein NN cord-016808-gy8d8285 9 11 - - HYPH cord-016808-gy8d8285 9 12 synthesizing synthesize VBG cord-016808-gy8d8285 9 13 and and CC cord-016808-gy8d8285 9 14 energy energy NN cord-016808-gy8d8285 9 15 - - HYPH cord-016808-gy8d8285 9 16 generating generate VBG cord-016808-gy8d8285 9 17 machineries machinery NNS cord-016808-gy8d8285 9 18 . . . cord-016808-gy8d8285 10 1 As as IN cord-016808-gy8d8285 10 2 a a DT cord-016808-gy8d8285 10 3 result result NN cord-016808-gy8d8285 10 4 , , , cord-016808-gy8d8285 10 5 viruses virus NNS cord-016808-gy8d8285 10 6 are be VBP cord-016808-gy8d8285 10 7 strictly strictly RB cord-016808-gy8d8285 10 8 dependent dependent JJ cord-016808-gy8d8285 10 9 on on IN cord-016808-gy8d8285 10 10 the the DT cord-016808-gy8d8285 10 11 host host NN cord-016808-gy8d8285 10 12 cell cell NN cord-016808-gy8d8285 10 13 . . . cord-016808-gy8d8285 11 1 Another another DT cord-016808-gy8d8285 11 2 fundamental fundamental JJ cord-016808-gy8d8285 11 3 distinction distinction NN cord-016808-gy8d8285 11 4 between between IN cord-016808-gy8d8285 11 5 viruses virus NNS cord-016808-gy8d8285 11 6 and and CC cord-016808-gy8d8285 11 7 cells cell NNS cord-016808-gy8d8285 11 8 is be VBZ cord-016808-gy8d8285 11 9 the the DT cord-016808-gy8d8285 11 10 mode mode NN cord-016808-gy8d8285 11 11 of of IN cord-016808-gy8d8285 11 12 their -PRON- PRP$ cord-016808-gy8d8285 11 13 multiplication multiplication NN cord-016808-gy8d8285 11 14 . . . cord-016808-gy8d8285 12 1 Viral viral JJ cord-016808-gy8d8285 12 2 reproduction reproduction NN cord-016808-gy8d8285 12 3 is be VBZ cord-016808-gy8d8285 12 4 based base VBN cord-016808-gy8d8285 12 5 on on IN cord-016808-gy8d8285 12 6 disjunctive disjunctive JJ cord-016808-gy8d8285 12 7 mechanisms mechanism NNS cord-016808-gy8d8285 12 8 , , , cord-016808-gy8d8285 12 9 whereupon whereupon WRB cord-016808-gy8d8285 12 10 virus virus NN cord-016808-gy8d8285 12 11 - - HYPH cord-016808-gy8d8285 12 12 specific specific JJ cord-016808-gy8d8285 12 13 proteins protein NNS cord-016808-gy8d8285 12 14 and and CC cord-016808-gy8d8285 12 15 genomic genomic JJ cord-016808-gy8d8285 12 16 nucleic nucleic JJ cord-016808-gy8d8285 12 17 acids acid NNS cord-016808-gy8d8285 12 18 are be VBP cord-016808-gy8d8285 12 19 accumulated accumulate VBN cord-016808-gy8d8285 12 20 as as IN cord-016808-gy8d8285 12 21 separate separate JJ cord-016808-gy8d8285 12 22 pools pool NNS cord-016808-gy8d8285 12 23 , , , cord-016808-gy8d8285 12 24 from from IN cord-016808-gy8d8285 12 25 which which WDT cord-016808-gy8d8285 12 26 multiple multiple JJ cord-016808-gy8d8285 12 27 mature mature JJ cord-016808-gy8d8285 12 28 progeny progeny JJ cord-016808-gy8d8285 12 29 viral viral JJ cord-016808-gy8d8285 12 30 particles particle NNS cord-016808-gy8d8285 12 31 ( ( -LRB- cord-016808-gy8d8285 12 32 or or CC cord-016808-gy8d8285 12 33 their -PRON- PRP$ cord-016808-gy8d8285 12 34 core core NN cord-016808-gy8d8285 12 35 nucleoproteins nucleoprotein NNS cord-016808-gy8d8285 12 36 ) ) -RRB- cord-016808-gy8d8285 12 37 are be VBP cord-016808-gy8d8285 12 38 eventually eventually RB cord-016808-gy8d8285 12 39 assembled assemble VBN cord-016808-gy8d8285 12 40 . . . cord-016808-gy8d8285 13 1 On on IN cord-016808-gy8d8285 13 2 the the DT cord-016808-gy8d8285 13 3 other other JJ cord-016808-gy8d8285 13 4 hand hand NN cord-016808-gy8d8285 13 5 , , , cord-016808-gy8d8285 13 6 cellular cellular JJ cord-016808-gy8d8285 13 7 multiplication multiplication NN cord-016808-gy8d8285 13 8 involves involve VBZ cord-016808-gy8d8285 13 9 ( ( -LRB- cord-016808-gy8d8285 13 10 usually usually RB cord-016808-gy8d8285 13 11 binary binary JJ cord-016808-gy8d8285 13 12 ) ) -RRB- cord-016808-gy8d8285 13 13 division division NN cord-016808-gy8d8285 13 14 . . . cord-016808-gy8d8285 14 1 During during IN cord-016808-gy8d8285 14 2 a a DT cord-016808-gy8d8285 14 3 part part NN cord-016808-gy8d8285 14 4 of of IN cord-016808-gy8d8285 14 5 their -PRON- PRP$ cord-016808-gy8d8285 14 6 life life NN cord-016808-gy8d8285 14 7 cycle cycle NN cord-016808-gy8d8285 14 8 , , , cord-016808-gy8d8285 14 9 the the DT cord-016808-gy8d8285 14 10 genome genome NN cord-016808-gy8d8285 14 11 of of IN cord-016808-gy8d8285 14 12 some some DT cord-016808-gy8d8285 14 13 viruses virus NNS cord-016808-gy8d8285 14 14 may may MD cord-016808-gy8d8285 14 15 be be VB cord-016808-gy8d8285 14 16 integrated integrate VBN cord-016808-gy8d8285 14 17 into into IN cord-016808-gy8d8285 14 18 the the DT cord-016808-gy8d8285 14 19 host host NN cord-016808-gy8d8285 14 20 cell cell NN cord-016808-gy8d8285 14 21 genome genome NN cord-016808-gy8d8285 14 22 , , , cord-016808-gy8d8285 14 23 existing exist VBG cord-016808-gy8d8285 14 24 and and CC cord-016808-gy8d8285 14 25 dividing divide VBG cord-016808-gy8d8285 14 26 as as IN cord-016808-gy8d8285 14 27 a a DT cord-016808-gy8d8285 14 28 cellular cellular JJ cord-016808-gy8d8285 14 29 chromosomal chromosomal JJ cord-016808-gy8d8285 14 30 segment segment NN cord-016808-gy8d8285 14 31 . . . cord-016808-gy8d8285 15 1 Depending depend VBG cord-016808-gy8d8285 15 2 on on IN cord-016808-gy8d8285 15 3 the the DT cord-016808-gy8d8285 15 4 type type NN cord-016808-gy8d8285 15 5 of of IN cord-016808-gy8d8285 15 6 genome genome NN cord-016808-gy8d8285 15 7 and and CC cord-016808-gy8d8285 15 8 mechanisms mechanism NNS cord-016808-gy8d8285 15 9 of of IN cord-016808-gy8d8285 15 10 its -PRON- PRP$ cord-016808-gy8d8285 15 11 replication replication NN cord-016808-gy8d8285 15 12 and and CC cord-016808-gy8d8285 15 13 expression expression NN cord-016808-gy8d8285 15 14 , , , cord-016808-gy8d8285 15 15 several several JJ cord-016808-gy8d8285 15 16 major major JJ cord-016808-gy8d8285 15 17 types type NNS cord-016808-gy8d8285 15 18 of of IN cord-016808-gy8d8285 15 19 viral viral JJ cord-016808-gy8d8285 15 20 " " `` cord-016808-gy8d8285 15 21 strategies strategy NNS cord-016808-gy8d8285 15 22 " " '' cord-016808-gy8d8285 15 23 can can MD cord-016808-gy8d8285 15 24 be be VB cord-016808-gy8d8285 15 25 discerned discern VBN cord-016808-gy8d8285 15 26 ( ( -LRB- cord-016808-gy8d8285 15 27 Baltimore Baltimore NNP cord-016808-gy8d8285 15 28 , , , cord-016808-gy8d8285 15 29 1971 1971 CD cord-016808-gy8d8285 15 30 ; ; : cord-016808-gy8d8285 15 31 Agol Agol NNP cord-016808-gy8d8285 15 32 , , , cord-016808-gy8d8285 15 33 1974 1974 CD cord-016808-gy8d8285 15 34 ) ) -RRB- cord-016808-gy8d8285 15 35 . . . cord-016808-gy8d8285 16 1 Remarkably remarkably RB cord-016808-gy8d8285 16 2 , , , cord-016808-gy8d8285 16 3 all all PDT cord-016808-gy8d8285 16 4 the the DT cord-016808-gy8d8285 16 5 theoretically theoretically RB cord-016808-gy8d8285 16 6 possible possible JJ cord-016808-gy8d8285 16 7 replication replication NN cord-016808-gy8d8285 16 8 / / SYM cord-016808-gy8d8285 16 9 transcription transcription NN cord-016808-gy8d8285 16 10 systems system NNS cord-016808-gy8d8285 16 11 based base VBN cord-016808-gy8d8285 16 12 on on IN cord-016808-gy8d8285 16 13 the the DT cord-016808-gy8d8285 16 14 principle principle NN cord-016808-gy8d8285 16 15 of of IN cord-016808-gy8d8285 16 16 complementarity complementarity NN cord-016808-gy8d8285 16 17 appear appear VBP cord-016808-gy8d8285 16 18 to to TO cord-016808-gy8d8285 16 19 be be VB cord-016808-gy8d8285 16 20 exploited exploit VBN cord-016808-gy8d8285 16 21 by by IN cord-016808-gy8d8285 16 22 viruses virus NNS cord-016808-gy8d8285 16 23 . . . cord-016808-gy8d8285 17 1 The the DT cord-016808-gy8d8285 17 2 replication replication NN cord-016808-gy8d8285 17 3 / / SYM cord-016808-gy8d8285 17 4 transcription transcription NN cord-016808-gy8d8285 17 5 system system NN cord-016808-gy8d8285 17 6 used use VBN cord-016808-gy8d8285 17 7 by by IN cord-016808-gy8d8285 17 8 genomes genome NNS cord-016808-gy8d8285 17 9 of of IN cord-016808-gy8d8285 17 10 cellular cellular JJ cord-016808-gy8d8285 17 11 organisms organism NNS cord-016808-gy8d8285 17 12 comprises comprise VBZ cord-016808-gy8d8285 17 13 only only RB cord-016808-gy8d8285 17 14 a a DT cord-016808-gy8d8285 17 15 minor minor JJ cord-016808-gy8d8285 17 16 subset subset NN cord-016808-gy8d8285 17 17 of of IN cord-016808-gy8d8285 17 18 the the DT cord-016808-gy8d8285 17 19 systems system NNS cord-016808-gy8d8285 17 20 exploited exploit VBN cord-016808-gy8d8285 17 21 by by IN cord-016808-gy8d8285 17 22 viruses virus NNS cord-016808-gy8d8285 17 23 . . . cord-016808-gy8d8285 18 1 Viruses virus NNS cord-016808-gy8d8285 18 2 have have VBP cord-016808-gy8d8285 18 3 very very RB cord-016808-gy8d8285 18 4 close close JJ cord-016808-gy8d8285 18 5 relatives relative NNS cord-016808-gy8d8285 18 6 , , , cord-016808-gy8d8285 18 7 selfish selfish JJ cord-016808-gy8d8285 18 8 genetic genetic JJ cord-016808-gy8d8285 18 9 elements element NNS cord-016808-gy8d8285 18 10 ( ( -LRB- cord-016808-gy8d8285 18 11 DNA DNA NNP cord-016808-gy8d8285 18 12 or or CC cord-016808-gy8d8285 18 13 RNA RNA NNP cord-016808-gy8d8285 18 14 ) ) -RRB- cord-016808-gy8d8285 18 15 : : : cord-016808-gy8d8285 18 16 viroids viroids NNP cord-016808-gy8d8285 18 17 ( ( -LRB- cord-016808-gy8d8285 18 18 small small JJ cord-016808-gy8d8285 18 19 infectious infectious JJ cord-016808-gy8d8285 18 20 non non JJ cord-016808-gy8d8285 18 21 - - JJ cord-016808-gy8d8285 18 22 coding coding JJ cord-016808-gy8d8285 18 23 circular circular JJ cord-016808-gy8d8285 18 24 RNA RNA NNP cord-016808-gy8d8285 18 25 ) ) -RRB- cord-016808-gy8d8285 18 26 , , , cord-016808-gy8d8285 18 27 plasmids plasmid NNS cord-016808-gy8d8285 18 28 ( ( -LRB- cord-016808-gy8d8285 18 29 various various JJ cord-016808-gy8d8285 18 30 nonchromosomal nonchromosomal JJ cord-016808-gy8d8285 18 31 DNA DNA NNP cord-016808-gy8d8285 18 32 or or CC cord-016808-gy8d8285 18 33 RNA RNA NNP cord-016808-gy8d8285 18 34 elements element NNS cord-016808-gy8d8285 18 35 ) ) -RRB- cord-016808-gy8d8285 18 36 , , , cord-016808-gy8d8285 18 37 transposons transposon NNS cord-016808-gy8d8285 18 38 ( ( -LRB- cord-016808-gy8d8285 18 39 DNA dna NN cord-016808-gy8d8285 18 40 elements element NNS cord-016808-gy8d8285 18 41 moving move VBG cord-016808-gy8d8285 18 42 between between IN cord-016808-gy8d8285 18 43 different different JJ cord-016808-gy8d8285 18 44 positions position NNS cord-016808-gy8d8285 18 45 of of IN cord-016808-gy8d8285 18 46 a a DT cord-016808-gy8d8285 18 47 genome genome NN cord-016808-gy8d8285 18 48 ; ; : cord-016808-gy8d8285 18 49 mobile mobile JJ cord-016808-gy8d8285 18 50 genetic genetic JJ cord-016808-gy8d8285 18 51 elements element NNS cord-016808-gy8d8285 18 52 ) ) -RRB- cord-016808-gy8d8285 18 53 , , , cord-016808-gy8d8285 18 54 retrotransposons retrotransposon NNS cord-016808-gy8d8285 18 55 ( ( -LRB- cord-016808-gy8d8285 18 56 mobile mobile JJ cord-016808-gy8d8285 18 57 DNA dna NN cord-016808-gy8d8285 18 58 elements element NNS cord-016808-gy8d8285 18 59 exploiting exploit VBG cord-016808-gy8d8285 18 60 reverse reverse JJ cord-016808-gy8d8285 18 61 transcription transcription NN cord-016808-gy8d8285 18 62 ) ) -RRB- cord-016808-gy8d8285 18 63 and and CC cord-016808-gy8d8285 18 64 some some DT cord-016808-gy8d8285 18 65 others other NNS cord-016808-gy8d8285 18 66 . . . cord-016808-gy8d8285 19 1 Viruses virus NNS cord-016808-gy8d8285 19 2 alike alike RB cord-016808-gy8d8285 19 3 , , , cord-016808-gy8d8285 19 4 they -PRON- PRP cord-016808-gy8d8285 19 5 are be VBP cord-016808-gy8d8285 19 6 fully fully RB cord-016808-gy8d8285 19 7 dependent dependent JJ cord-016808-gy8d8285 19 8 on on IN cord-016808-gy8d8285 19 9 cellular cellular JJ cord-016808-gy8d8285 19 10 translation translation NN cord-016808-gy8d8285 19 11 and and CC cord-016808-gy8d8285 19 12 energy energy NN cord-016808-gy8d8285 19 13 - - HYPH cord-016808-gy8d8285 19 14 generating generate VBG cord-016808-gy8d8285 19 15 machineries machinery NNS cord-016808-gy8d8285 19 16 and and CC cord-016808-gy8d8285 19 17 use use VB cord-016808-gy8d8285 19 18 the the DT cord-016808-gy8d8285 19 19 same same JJ cord-016808-gy8d8285 19 20 expression expression NN cord-016808-gy8d8285 19 21 and and CC cord-016808-gy8d8285 19 22 replication replication NN cord-016808-gy8d8285 19 23 mechanisms mechanism NNS cord-016808-gy8d8285 19 24 as as IN cord-016808-gy8d8285 19 25 viruses virus NNS cord-016808-gy8d8285 19 26 do do VBP cord-016808-gy8d8285 19 27 . . . cord-016808-gy8d8285 20 1 They -PRON- PRP cord-016808-gy8d8285 20 2 may may MD cord-016808-gy8d8285 20 3 be be VB cord-016808-gy8d8285 20 4 integrated integrate VBN cord-016808-gy8d8285 20 5 into into IN cord-016808-gy8d8285 20 6 cellular cellular JJ cord-016808-gy8d8285 20 7 DNA DNA NNP cord-016808-gy8d8285 20 8 or or CC cord-016808-gy8d8285 20 9 RNA RNA NNP cord-016808-gy8d8285 20 10 or or CC cord-016808-gy8d8285 20 11 exist exist VBP cord-016808-gy8d8285 20 12 separately separately RB cord-016808-gy8d8285 20 13 , , , cord-016808-gy8d8285 20 14 may may MD cord-016808-gy8d8285 20 15 be be VB cord-016808-gy8d8285 20 16 amplified amplify VBN cord-016808-gy8d8285 20 17 in in IN cord-016808-gy8d8285 20 18 a a DT cord-016808-gy8d8285 20 19 cell cell NN cord-016808-gy8d8285 20 20 , , , cord-016808-gy8d8285 20 21 move move VB cord-016808-gy8d8285 20 22 between between IN cord-016808-gy8d8285 20 23 different different JJ cord-016808-gy8d8285 20 24 parts part NNS cord-016808-gy8d8285 20 25 of of IN cord-016808-gy8d8285 20 26 the the DT cord-016808-gy8d8285 20 27 genetic genetic JJ cord-016808-gy8d8285 20 28 material material NN cord-016808-gy8d8285 20 29 of of IN cord-016808-gy8d8285 20 30 a a DT cord-016808-gy8d8285 20 31 cells cell NNS cord-016808-gy8d8285 20 32 or or CC cord-016808-gy8d8285 20 33 migrate migrate VBP cord-016808-gy8d8285 20 34 between between IN cord-016808-gy8d8285 20 35 cells cell NNS cord-016808-gy8d8285 20 36 . . . cord-016808-gy8d8285 21 1 Therefore therefore RB cord-016808-gy8d8285 21 2 , , , cord-016808-gy8d8285 21 3 these these DT cord-016808-gy8d8285 21 4 elements element NNS cord-016808-gy8d8285 21 5 can can MD cord-016808-gy8d8285 21 6 be be VB cord-016808-gy8d8285 21 7 combined combine VBN cord-016808-gy8d8285 21 8 with with IN cord-016808-gy8d8285 21 9 viruses virus NNS cord-016808-gy8d8285 21 10 into into IN cord-016808-gy8d8285 21 11 a a DT cord-016808-gy8d8285 21 12 common common JJ cord-016808-gy8d8285 21 13 domain domain NN cord-016808-gy8d8285 21 14 of of IN cord-016808-gy8d8285 21 15 life life NN cord-016808-gy8d8285 21 16 . . . cord-016808-gy8d8285 22 1 In in IN cord-016808-gy8d8285 22 2 distinction distinction NN cord-016808-gy8d8285 22 3 from from IN cord-016808-gy8d8285 22 4 viruses virus NNS cord-016808-gy8d8285 22 5 , , , cord-016808-gy8d8285 22 6 however however RB cord-016808-gy8d8285 22 7 , , , cord-016808-gy8d8285 22 8 they -PRON- PRP cord-016808-gy8d8285 22 9 lack lack VBP cord-016808-gy8d8285 22 10 protein protein NN cord-016808-gy8d8285 22 11 coats coat NNS cord-016808-gy8d8285 22 12 and and CC cord-016808-gy8d8285 22 13 stable stable JJ cord-016808-gy8d8285 22 14 extracellular extracellular JJ cord-016808-gy8d8285 22 15 forms form NNS cord-016808-gy8d8285 22 16 . . . cord-016808-gy8d8285 23 1 There there EX cord-016808-gy8d8285 23 2 are be VBP cord-016808-gy8d8285 23 3 two two CD cord-016808-gy8d8285 23 4 major major JJ cord-016808-gy8d8285 23 5 problems problem NNS cord-016808-gy8d8285 23 6 related relate VBN cord-016808-gy8d8285 23 7 to to IN cord-016808-gy8d8285 23 8 the the DT cord-016808-gy8d8285 23 9 origin origin NN cord-016808-gy8d8285 23 10 of of IN cord-016808-gy8d8285 23 11 viruses virus NNS cord-016808-gy8d8285 23 12 . . . cord-016808-gy8d8285 24 1 What what WP cord-016808-gy8d8285 24 2 are be VBP cord-016808-gy8d8285 24 3 relationships relationship NNS cord-016808-gy8d8285 24 4 between between IN cord-016808-gy8d8285 24 5 viruses virus NNS cord-016808-gy8d8285 24 6 and and CC cord-016808-gy8d8285 24 7 cellular cellular JJ cord-016808-gy8d8285 24 8 organisms organism NNS cord-016808-gy8d8285 24 9 ? ? . cord-016808-gy8d8285 25 1 In in IN cord-016808-gy8d8285 25 2 other other JJ cord-016808-gy8d8285 25 3 words word NNS cord-016808-gy8d8285 25 4 , , , cord-016808-gy8d8285 25 5 is be VBZ cord-016808-gy8d8285 25 6 there there EX cord-016808-gy8d8285 25 7 a a DT cord-016808-gy8d8285 25 8 place(s place(s NN cord-016808-gy8d8285 25 9 ) ) -RRB- cord-016808-gy8d8285 25 10 for for IN cord-016808-gy8d8285 25 11 viruses virus NNS cord-016808-gy8d8285 25 12 on on IN cord-016808-gy8d8285 25 13 universal universal JJ cord-016808-gy8d8285 25 14 trees tree NNS cord-016808-gy8d8285 25 15 of of IN cord-016808-gy8d8285 25 16 life life NN cord-016808-gy8d8285 25 17 proposed propose VBN cord-016808-gy8d8285 25 18 for for IN cord-016808-gy8d8285 25 19 its -PRON- PRP$ cord-016808-gy8d8285 25 20 three three CD cord-016808-gy8d8285 25 21 kingdoms kingdom NNS cord-016808-gy8d8285 25 22 , , , cord-016808-gy8d8285 25 23 Archea Archea NNP cord-016808-gy8d8285 25 24 , , , cord-016808-gy8d8285 25 25 Eubacteria Eubacteria NNP cord-016808-gy8d8285 25 26 , , , cord-016808-gy8d8285 25 27 and and CC cord-016808-gy8d8285 25 28 Eukarya Eukarya NNP cord-016808-gy8d8285 25 29 ? ? . cord-016808-gy8d8285 26 1 And and CC cord-016808-gy8d8285 26 2 secondly secondly RB cord-016808-gy8d8285 26 3 , , , cord-016808-gy8d8285 26 4 are be VBP cord-016808-gy8d8285 26 5 viruses virus NNS cord-016808-gy8d8285 26 6 monophyletic monophyletic JJ cord-016808-gy8d8285 27 1 , , , cord-016808-gy8d8285 27 2 i.e. i.e. FW cord-016808-gy8d8285 27 3 , , , cord-016808-gy8d8285 27 4 is be VBZ cord-016808-gy8d8285 27 5 there there EX cord-016808-gy8d8285 27 6 a a DT cord-016808-gy8d8285 27 7 single single JJ cord-016808-gy8d8285 27 8 evolutionary evolutionary JJ cord-016808-gy8d8285 27 9 tree tree NN cord-016808-gy8d8285 27 10 or or CC cord-016808-gy8d8285 27 11 branch branch NN cord-016808-gy8d8285 27 12 of of IN cord-016808-gy8d8285 27 13 viruses virus NNS cord-016808-gy8d8285 27 14 ? ? . cord-016808-gy8d8285 28 1 During during IN cord-016808-gy8d8285 28 2 the the DT cord-016808-gy8d8285 28 3 first first JJ cord-016808-gy8d8285 28 4 century century NN cord-016808-gy8d8285 28 5 after after IN cord-016808-gy8d8285 28 6 discovery discovery NN cord-016808-gy8d8285 28 7 of of IN cord-016808-gy8d8285 28 8 viruses virus NNS cord-016808-gy8d8285 28 9 , , , cord-016808-gy8d8285 28 10 several several JJ cord-016808-gy8d8285 28 11 purely purely RB cord-016808-gy8d8285 28 12 speculative speculative JJ cord-016808-gy8d8285 28 13 but but CC cord-016808-gy8d8285 28 14 quite quite RB cord-016808-gy8d8285 28 15 imaginative imaginative JJ cord-016808-gy8d8285 28 16 hypotheses hypothesis NNS cord-016808-gy8d8285 28 17 had have VBD cord-016808-gy8d8285 28 18 been be VBN cord-016808-gy8d8285 28 19 proposed propose VBN cord-016808-gy8d8285 28 20 : : : cord-016808-gy8d8285 28 21 according accord VBG cord-016808-gy8d8285 28 22 to to IN cord-016808-gy8d8285 28 23 them -PRON- PRP cord-016808-gy8d8285 28 24 , , , cord-016808-gy8d8285 28 25 viruses virus NNS cord-016808-gy8d8285 28 26 originated originate VBD cord-016808-gy8d8285 28 27 from from IN cord-016808-gy8d8285 28 28 escaped escape VBD cord-016808-gy8d8285 28 29 ( ( -LRB- cord-016808-gy8d8285 28 30 " " `` cord-016808-gy8d8285 28 31 mad mad JJ cord-016808-gy8d8285 28 32 " " '' cord-016808-gy8d8285 28 33 ) ) -RRB- cord-016808-gy8d8285 29 1 cellular cellular JJ cord-016808-gy8d8285 29 2 genes gene NNS cord-016808-gy8d8285 29 3 , , , cord-016808-gy8d8285 29 4 or or CC cord-016808-gy8d8285 29 5 from from IN cord-016808-gy8d8285 29 6 degenerated degenerated JJ cord-016808-gy8d8285 29 7 cells cell NNS cord-016808-gy8d8285 29 8 , , , cord-016808-gy8d8285 29 9 or or CC cord-016808-gy8d8285 29 10 they -PRON- PRP cord-016808-gy8d8285 29 11 are be VBP cord-016808-gy8d8285 29 12 descendants descendant NNS cord-016808-gy8d8285 29 13 of of IN cord-016808-gy8d8285 29 14 precellular precellular JJ cord-016808-gy8d8285 29 15 genetic genetic JJ cord-016808-gy8d8285 29 16 elements element NNS cord-016808-gy8d8285 29 17 . . . cord-016808-gy8d8285 30 1 Modern modern JJ cord-016808-gy8d8285 30 2 hypotheses hypothesis NNS cord-016808-gy8d8285 30 3 of of IN cord-016808-gy8d8285 30 4 viral viral JJ cord-016808-gy8d8285 30 5 origin origin NN cord-016808-gy8d8285 30 6 are be VBP cord-016808-gy8d8285 30 7 based base VBN cord-016808-gy8d8285 30 8 on on IN cord-016808-gy8d8285 30 9 two two CD cord-016808-gy8d8285 30 10 major major JJ cord-016808-gy8d8285 30 11 developments development NNS cord-016808-gy8d8285 30 12 of of IN cord-016808-gy8d8285 30 13 the the DT cord-016808-gy8d8285 30 14 molecular molecular JJ cord-016808-gy8d8285 30 15 biology biology NN cord-016808-gy8d8285 30 16 : : : cord-016808-gy8d8285 30 17 discovery discovery NN cord-016808-gy8d8285 30 18 of of IN cord-016808-gy8d8285 30 19 ribozymes ribozyme NNS cord-016808-gy8d8285 30 20 ( ( -LRB- cord-016808-gy8d8285 30 21 RNA RNA NNP cord-016808-gy8d8285 30 22 - - HYPH cord-016808-gy8d8285 30 23 based base VBN cord-016808-gy8d8285 30 24 enzymes enzyme NNS cord-016808-gy8d8285 30 25 ) ) -RRB- cord-016808-gy8d8285 30 26 and and CC cord-016808-gy8d8285 30 27 formulation formulation NN cord-016808-gy8d8285 30 28 of of IN cord-016808-gy8d8285 30 29 the the DT cord-016808-gy8d8285 30 30 " " `` cord-016808-gy8d8285 30 31 RNA RNA NNP cord-016808-gy8d8285 30 32 World World NNP cord-016808-gy8d8285 30 33 " " '' cord-016808-gy8d8285 30 34 theory theory NN cord-016808-gy8d8285 30 35 ( ( -LRB- cord-016808-gy8d8285 30 36 RNA RNA NNP cord-016808-gy8d8285 30 37 had have VBD cord-016808-gy8d8285 30 38 been be VBN cord-016808-gy8d8285 30 39 " " `` cord-016808-gy8d8285 30 40 invented invent VBN cord-016808-gy8d8285 30 41 " " '' cord-016808-gy8d8285 30 42 before before IN cord-016808-gy8d8285 30 43 proteins protein NNS cord-016808-gy8d8285 30 44 and and CC cord-016808-gy8d8285 30 45 DNA DNA NNP cord-016808-gy8d8285 30 46 ) ) -RRB- cord-016808-gy8d8285 30 47 , , , cord-016808-gy8d8285 30 48 on on IN cord-016808-gy8d8285 30 49 the the DT cord-016808-gy8d8285 30 50 one one CD cord-016808-gy8d8285 30 51 hand hand NN cord-016808-gy8d8285 30 52 , , , cord-016808-gy8d8285 30 53 and and CC cord-016808-gy8d8285 30 54 achievements achievement NNS cord-016808-gy8d8285 30 55 of of IN cord-016808-gy8d8285 30 56 genomics genomic NNS cord-016808-gy8d8285 30 57 ( ( -LRB- cord-016808-gy8d8285 30 58 determination determination NN cord-016808-gy8d8285 30 59 of of IN cord-016808-gy8d8285 30 60 the the DT cord-016808-gy8d8285 30 61 nucleotide nucleotide JJ cord-016808-gy8d8285 30 62 sequences sequence NNS cord-016808-gy8d8285 30 63 of of IN cord-016808-gy8d8285 30 64 a a DT cord-016808-gy8d8285 30 65 great great JJ cord-016808-gy8d8285 30 66 number number NN cord-016808-gy8d8285 30 67 of of IN cord-016808-gy8d8285 30 68 cellular cellular JJ cord-016808-gy8d8285 30 69 and and CC cord-016808-gy8d8285 30 70 viral viral JJ cord-016808-gy8d8285 30 71 genomes genome NNS cord-016808-gy8d8285 30 72 ) ) -RRB- cord-016808-gy8d8285 30 73 , , , cord-016808-gy8d8285 30 74 on on IN cord-016808-gy8d8285 30 75 the the DT cord-016808-gy8d8285 30 76 other other JJ cord-016808-gy8d8285 30 77 . . . cord-016808-gy8d8285 31 1 These these DT cord-016808-gy8d8285 31 2 hypotheses hypothesis NNS cord-016808-gy8d8285 31 3 postulate postulate VBP cord-016808-gy8d8285 31 4 a a DT cord-016808-gy8d8285 31 5 very very RB cord-016808-gy8d8285 31 6 significant significant JJ cord-016808-gy8d8285 31 7 contribution contribution NN cord-016808-gy8d8285 31 8 of of IN cord-016808-gy8d8285 31 9 viruses virus NNS cord-016808-gy8d8285 31 10 to to IN cord-016808-gy8d8285 31 11 the the DT cord-016808-gy8d8285 31 12 genetic genetic JJ cord-016808-gy8d8285 31 13 information information NN cord-016808-gy8d8285 31 14 of of IN cord-016808-gy8d8285 31 15 cellular cellular JJ cord-016808-gy8d8285 31 16 organisms organism NNS cord-016808-gy8d8285 31 17 . . . cord-016808-gy8d8285 32 1 According accord VBG cord-016808-gy8d8285 32 2 to to IN cord-016808-gy8d8285 32 3 the the DT cord-016808-gy8d8285 32 4 " " `` cord-016808-gy8d8285 32 5 Three three CD cord-016808-gy8d8285 32 6 viruses virus NNS cord-016808-gy8d8285 32 7 , , , cord-016808-gy8d8285 32 8 three three CD cord-016808-gy8d8285 32 9 domains domain NNS cord-016808-gy8d8285 32 10 " " '' cord-016808-gy8d8285 32 11 hypothesis hypothesis NN cord-016808-gy8d8285 32 12 proposed propose VBN cord-016808-gy8d8285 32 13 by by IN cord-016808-gy8d8285 32 14 P. P. NNP cord-016808-gy8d8285 32 15 Forterre Forterre NNP cord-016808-gy8d8285 32 16 , , , cord-016808-gy8d8285 32 17 the the DT cord-016808-gy8d8285 32 18 cellular cellular JJ cord-016808-gy8d8285 32 19 Last Last NNP cord-016808-gy8d8285 32 20 Universal Universal NNP cord-016808-gy8d8285 32 21 Common Common NNP cord-016808-gy8d8285 32 22 Ancestor Ancestor NNP cord-016808-gy8d8285 32 23 ( ( -LRB- cord-016808-gy8d8285 32 24 LUCA LUCA NNP cord-016808-gy8d8285 32 25 ) ) -RRB- cord-016808-gy8d8285 32 26 had have VBD cord-016808-gy8d8285 32 27 an an DT cord-016808-gy8d8285 32 28 RNA RNA NNP cord-016808-gy8d8285 32 29 genome genome NN cord-016808-gy8d8285 32 30 and and CC cord-016808-gy8d8285 32 31 harbored harbor VBD cord-016808-gy8d8285 32 32 a a DT cord-016808-gy8d8285 32 33 variety variety NN cord-016808-gy8d8285 32 34 of of IN cord-016808-gy8d8285 32 35 already already RB cord-016808-gy8d8285 32 36 created create VBN cord-016808-gy8d8285 32 37 RNA RNA NNP cord-016808-gy8d8285 32 38 - - HYPH cord-016808-gy8d8285 32 39 containing contain VBG cord-016808-gy8d8285 32 40 viruses virus NNS cord-016808-gy8d8285 32 41 . . . cord-016808-gy8d8285 33 1 During during IN cord-016808-gy8d8285 33 2 the the DT cord-016808-gy8d8285 33 3 next next JJ cord-016808-gy8d8285 33 4 step step NN cord-016808-gy8d8285 33 5 , , , cord-016808-gy8d8285 33 6 DNA dna NN cord-016808-gy8d8285 33 7 and and CC cord-016808-gy8d8285 33 8 DNA dna NN cord-016808-gy8d8285 33 9 viruses virus NNS cord-016808-gy8d8285 33 10 had have VBD cord-016808-gy8d8285 33 11 been be VBN cord-016808-gy8d8285 33 12 invented invent VBN cord-016808-gy8d8285 33 13 . . . cord-016808-gy8d8285 34 1 Three three CD cord-016808-gy8d8285 34 2 distinct distinct JJ cord-016808-gy8d8285 34 3 DNA dna NN cord-016808-gy8d8285 34 4 viruses virus NNS cord-016808-gy8d8285 34 5 , , , cord-016808-gy8d8285 34 6 which which WDT cord-016808-gy8d8285 34 7 had have VBD cord-016808-gy8d8285 34 8 infected infect VBN cord-016808-gy8d8285 34 9 RNA RNA NNP cord-016808-gy8d8285 34 10 genome genome NN cord-016808-gy8d8285 34 11 - - HYPH cord-016808-gy8d8285 34 12 containing contain VBG cord-016808-gy8d8285 34 13 cells cell NNS cord-016808-gy8d8285 34 14 , , , cord-016808-gy8d8285 34 15 gave give VBD cord-016808-gy8d8285 34 16 rise rise NN cord-016808-gy8d8285 34 17 to to IN cord-016808-gy8d8285 34 18 the the DT cord-016808-gy8d8285 34 19 three three CD cord-016808-gy8d8285 34 20 distinct distinct JJ cord-016808-gy8d8285 34 21 domains domain NNS cord-016808-gy8d8285 34 22 of of IN cord-016808-gy8d8285 34 23 life life NN cord-016808-gy8d8285 34 24 , , , cord-016808-gy8d8285 34 25 bacteria bacteria NNS cord-016808-gy8d8285 34 26 , , , cord-016808-gy8d8285 34 27 archea archea NNP cord-016808-gy8d8285 34 28 , , , cord-016808-gy8d8285 34 29 and and CC cord-016808-gy8d8285 34 30 eukarya eukarya NNP cord-016808-gy8d8285 34 31 ( ( -LRB- cord-016808-gy8d8285 34 32 Forterre Forterre NNP cord-016808-gy8d8285 34 33 , , , cord-016808-gy8d8285 34 34 2006 2006 CD cord-016808-gy8d8285 34 35 ) ) -RRB- cord-016808-gy8d8285 34 36 . . . cord-016808-gy8d8285 35 1 A a DT cord-016808-gy8d8285 35 2 detailed detailed JJ cord-016808-gy8d8285 35 3 hypothetical hypothetical JJ cord-016808-gy8d8285 35 4 evolutionary evolutionary JJ cord-016808-gy8d8285 35 5 scenario scenario NN cord-016808-gy8d8285 35 6 was be VBD cord-016808-gy8d8285 35 7 described describe VBN cord-016808-gy8d8285 35 8 by by IN cord-016808-gy8d8285 35 9 E. E. NNP cord-016808-gy8d8285 35 10 Koonin Koonin NNP cord-016808-gy8d8285 35 11 and and CC cord-016808-gy8d8285 35 12 colleagues colleague NNS cord-016808-gy8d8285 35 13 ( ( -LRB- cord-016808-gy8d8285 35 14 Koonin Koonin NNP cord-016808-gy8d8285 35 15 and and CC cord-016808-gy8d8285 35 16 Martin Martin NNP cord-016808-gy8d8285 35 17 , , , cord-016808-gy8d8285 35 18 2005 2005 CD cord-016808-gy8d8285 35 19 ; ; : cord-016808-gy8d8285 35 20 Koonin Koonin NNP cord-016808-gy8d8285 35 21 et et NNP cord-016808-gy8d8285 35 22 al al NNP cord-016808-gy8d8285 35 23 . . NNP cord-016808-gy8d8285 35 24 , , , cord-016808-gy8d8285 35 25 2006 2006 CD cord-016808-gy8d8285 35 26 ) ) -RRB- cord-016808-gy8d8285 35 27 . . . cord-016808-gy8d8285 36 1 The the DT cord-016808-gy8d8285 36 2 authors author NNS cord-016808-gy8d8285 36 3 suggest suggest VBP cord-016808-gy8d8285 36 4 that that IN cord-016808-gy8d8285 36 5 life life NN cord-016808-gy8d8285 36 6 has have VBZ cord-016808-gy8d8285 36 7 originated originate VBN cord-016808-gy8d8285 36 8 in in IN cord-016808-gy8d8285 36 9 inorganic inorganic JJ cord-016808-gy8d8285 36 10 compartments compartment NNS cord-016808-gy8d8285 36 11 serving serve VBG cord-016808-gy8d8285 36 12 as as IN cord-016808-gy8d8285 36 13 surrogate surrogate JJ cord-016808-gy8d8285 36 14 cells cell NNS cord-016808-gy8d8285 36 15 . . . cord-016808-gy8d8285 37 1 RNA rna NN cord-016808-gy8d8285 37 2 molecules molecule NNS cord-016808-gy8d8285 37 3 with with IN cord-016808-gy8d8285 37 4 enzymatic enzymatic JJ cord-016808-gy8d8285 37 5 activities activity NNS cord-016808-gy8d8285 37 6 ( ( -LRB- cord-016808-gy8d8285 38 1 ribozymes ribozyme NNS cord-016808-gy8d8285 38 2 ) ) -RRB- cord-016808-gy8d8285 38 3 could could MD cord-016808-gy8d8285 38 4 attain attain VB cord-016808-gy8d8285 38 5 there there EX cord-016808-gy8d8285 38 6 relatively relatively RB cord-016808-gy8d8285 38 7 high high JJ cord-016808-gy8d8285 38 8 concentrations concentration NNS cord-016808-gy8d8285 38 9 and and CC cord-016808-gy8d8285 38 10 could could MD cord-016808-gy8d8285 38 11 move move VB cord-016808-gy8d8285 38 12 between between IN cord-016808-gy8d8285 38 13 compartments compartment NNS cord-016808-gy8d8285 38 14 and and CC cord-016808-gy8d8285 38 15 " " `` cord-016808-gy8d8285 38 16 infect infect VB cord-016808-gy8d8285 38 17 " " '' cord-016808-gy8d8285 38 18 them -PRON- PRP cord-016808-gy8d8285 38 19 . . . cord-016808-gy8d8285 39 1 At at IN cord-016808-gy8d8285 39 2 this this DT cord-016808-gy8d8285 39 3 precellular precellular JJ cord-016808-gy8d8285 39 4 stage stage NN cord-016808-gy8d8285 39 5 , , , cord-016808-gy8d8285 39 6 several several JJ cord-016808-gy8d8285 39 7 fundamental fundamental JJ cord-016808-gy8d8285 39 8 inventions invention NNS cord-016808-gy8d8285 39 9 had have VBD cord-016808-gy8d8285 39 10 been be VBN cord-016808-gy8d8285 39 11 consecutively consecutively RB cord-016808-gy8d8285 39 12 made make VBN cord-016808-gy8d8285 39 13 . . . cord-016808-gy8d8285 40 1 The the DT cord-016808-gy8d8285 40 2 invention invention NN cord-016808-gy8d8285 40 3 of of IN cord-016808-gy8d8285 40 4 proteins protein NNS cord-016808-gy8d8285 40 5 led lead VBN cord-016808-gy8d8285 40 6 to to IN cord-016808-gy8d8285 40 7 the the DT cord-016808-gy8d8285 40 8 appearance appearance NN cord-016808-gy8d8285 40 9 of of IN cord-016808-gy8d8285 40 10 viruses virus NNS cord-016808-gy8d8285 40 11 with with IN cord-016808-gy8d8285 40 12 positive positive JJ cord-016808-gy8d8285 40 13 single single JJ cord-016808-gy8d8285 40 14 - - HYPH cord-016808-gy8d8285 40 15 strand strand NN cord-016808-gy8d8285 40 16 and and CC cord-016808-gy8d8285 40 17 with with IN cord-016808-gy8d8285 40 18 double double JJ cord-016808-gy8d8285 40 19 - - HYPH cord-016808-gy8d8285 40 20 strand strand NN cord-016808-gy8d8285 40 21 RNA RNA NNP cord-016808-gy8d8285 40 22 genomes genome NNS cord-016808-gy8d8285 40 23 . . . cord-016808-gy8d8285 41 1 The the DT cord-016808-gy8d8285 41 2 invention invention NN cord-016808-gy8d8285 41 3 of of IN cord-016808-gy8d8285 41 4 DNA dna NN cord-016808-gy8d8285 41 5 resulting result VBG cord-016808-gy8d8285 41 6 from from IN cord-016808-gy8d8285 41 7 RNA rna NN cord-016808-gy8d8285 41 8 - - HYPH cord-016808-gy8d8285 41 9 dependent dependent JJ cord-016808-gy8d8285 41 10 DNA dna NN cord-016808-gy8d8285 41 11 synthesis synthesis NN cord-016808-gy8d8285 41 12 led lead VBD cord-016808-gy8d8285 41 13 to to IN cord-016808-gy8d8285 41 14 the the DT cord-016808-gy8d8285 41 15 appearance appearance NN cord-016808-gy8d8285 41 16 of of IN cord-016808-gy8d8285 41 17 retroviruses retrovirus NNS cord-016808-gy8d8285 41 18 , , , cord-016808-gy8d8285 41 19 retroid retroid NNP cord-016808-gy8d8285 41 20 viruses virus NNS cord-016808-gy8d8285 41 21 and and CC cord-016808-gy8d8285 41 22 retroposons retroposon NNS cord-016808-gy8d8285 41 23 . . . cord-016808-gy8d8285 42 1 Finally finally RB cord-016808-gy8d8285 42 2 , , , cord-016808-gy8d8285 42 3 DNA dna NN cord-016808-gy8d8285 42 4 - - HYPH cord-016808-gy8d8285 42 5 dependent dependent JJ cord-016808-gy8d8285 42 6 DNA dna NN cord-016808-gy8d8285 42 7 synthesis synthesis NN cord-016808-gy8d8285 42 8 had have VBD cord-016808-gy8d8285 42 9 been be VBN cord-016808-gy8d8285 42 10 invented invent VBN cord-016808-gy8d8285 42 11 , , , cord-016808-gy8d8285 42 12 giving give VBG cord-016808-gy8d8285 42 13 rise rise NN cord-016808-gy8d8285 42 14 to to IN cord-016808-gy8d8285 42 15 the the DT cord-016808-gy8d8285 42 16 appearance appearance NN cord-016808-gy8d8285 42 17 of of IN cord-016808-gy8d8285 42 18 viruses virus NNS cord-016808-gy8d8285 42 19 with with IN cord-016808-gy8d8285 42 20 double double JJ cord-016808-gy8d8285 42 21 - - HYPH cord-016808-gy8d8285 42 22 strand strand NN cord-016808-gy8d8285 42 23 DNA dna NN cord-016808-gy8d8285 42 24 genomes genome NNS cord-016808-gy8d8285 42 25 and and CC cord-016808-gy8d8285 42 26 DNA dna NN cord-016808-gy8d8285 42 27 plasmids plasmid NNS cord-016808-gy8d8285 42 28 . . . cord-016808-gy8d8285 43 1 Only only RB cord-016808-gy8d8285 43 2 after after IN cord-016808-gy8d8285 43 3 achieving achieve VBG cord-016808-gy8d8285 43 4 such such JJ cord-016808-gy8d8285 43 5 genetic genetic JJ cord-016808-gy8d8285 43 6 variability variability NN cord-016808-gy8d8285 43 7 and and CC cord-016808-gy8d8285 43 8 richness richness NN cord-016808-gy8d8285 43 9 , , , cord-016808-gy8d8285 43 10 the the DT cord-016808-gy8d8285 43 11 " " `` cord-016808-gy8d8285 43 12 pre pre JJ cord-016808-gy8d8285 43 13 - - JJ cord-016808-gy8d8285 43 14 archeal archeal JJ cord-016808-gy8d8285 43 15 " " '' cord-016808-gy8d8285 43 16 and and CC cord-016808-gy8d8285 43 17 " " `` cord-016808-gy8d8285 43 18 pre pre JJ cord-016808-gy8d8285 43 19 - - JJ cord-016808-gy8d8285 43 20 bacterial bacterial JJ cord-016808-gy8d8285 43 21 " " '' cord-016808-gy8d8285 43 22 inorganic inorganic JJ cord-016808-gy8d8285 43 23 compartments compartment NNS cord-016808-gy8d8285 43 24 had have VBD cord-016808-gy8d8285 43 25 been be VBN cord-016808-gy8d8285 43 26 replaced replace VBN cord-016808-gy8d8285 43 27 by by IN cord-016808-gy8d8285 43 28 cellular cellular JJ cord-016808-gy8d8285 43 29 forms form NNS cord-016808-gy8d8285 43 30 , , , cord-016808-gy8d8285 43 31 which which WDT cord-016808-gy8d8285 43 32 retained retain VBD cord-016808-gy8d8285 43 33 numerous numerous JJ cord-016808-gy8d8285 43 34 ancient ancient JJ cord-016808-gy8d8285 43 35 viruses virus NNS cord-016808-gy8d8285 43 36 . . . cord-016808-gy8d8285 44 1 The the DT cord-016808-gy8d8285 44 2 engulfment engulfment NN cord-016808-gy8d8285 44 3 of of IN cord-016808-gy8d8285 44 4 a a DT cord-016808-gy8d8285 44 5 bacterium bacterium NN cord-016808-gy8d8285 44 6 by by IN cord-016808-gy8d8285 44 7 an an DT cord-016808-gy8d8285 44 8 archaeon archaeon NN cord-016808-gy8d8285 44 9 was be VBD cord-016808-gy8d8285 44 10 the the DT cord-016808-gy8d8285 44 11 starting starting NN cord-016808-gy8d8285 44 12 point point NN cord-016808-gy8d8285 44 13 of of IN cord-016808-gy8d8285 44 14 eukarya eukarya NNP cord-016808-gy8d8285 44 15 , , , cord-016808-gy8d8285 44 16 which which WDT cord-016808-gy8d8285 44 17 acquired acquire VBD cord-016808-gy8d8285 44 18 viruses virus NNS cord-016808-gy8d8285 44 19 of of IN cord-016808-gy8d8285 44 20 both both DT cord-016808-gy8d8285 44 21 of of IN cord-016808-gy8d8285 44 22 their -PRON- PRP$ cord-016808-gy8d8285 44 23 " " `` cord-016808-gy8d8285 44 24 parents parent NNS cord-016808-gy8d8285 44 25 " " '' cord-016808-gy8d8285 44 26 . . . cord-016808-gy8d8285 45 1 According accord VBG cord-016808-gy8d8285 45 2 to to IN cord-016808-gy8d8285 45 3 Koonin Koonin NNP cord-016808-gy8d8285 45 4 , , , cord-016808-gy8d8285 45 5 the the DT cord-016808-gy8d8285 45 6 major major JJ cord-016808-gy8d8285 45 7 classes class NNS cord-016808-gy8d8285 45 8 of of IN cord-016808-gy8d8285 45 9 viruses virus NNS cord-016808-gy8d8285 45 10 do do VBP cord-016808-gy8d8285 45 11 not not RB cord-016808-gy8d8285 45 12 have have VB cord-016808-gy8d8285 45 13 a a DT cord-016808-gy8d8285 45 14 common common JJ cord-016808-gy8d8285 45 15 origin origin NN cord-016808-gy8d8285 45 16 in in IN cord-016808-gy8d8285 45 17 the the DT cord-016808-gy8d8285 45 18 traditional traditional JJ cord-016808-gy8d8285 45 19 sense sense NN cord-016808-gy8d8285 45 20 but but CC cord-016808-gy8d8285 45 21 neither neither DT cord-016808-gy8d8285 45 22 are be VBP cord-016808-gy8d8285 45 23 they -PRON- PRP cord-016808-gy8d8285 45 24 unrelated unrelated JJ cord-016808-gy8d8285 45 25 . . . cord-016808-gy8d8285 46 1 On on IN cord-016808-gy8d8285 46 2 the the DT cord-016808-gy8d8285 46 3 other other JJ cord-016808-gy8d8285 46 4 hand hand NN cord-016808-gy8d8285 46 5 , , , cord-016808-gy8d8285 46 6 a a DT cord-016808-gy8d8285 46 7 very very RB cord-016808-gy8d8285 46 8 significant significant JJ cord-016808-gy8d8285 46 9 proportion proportion NN cord-016808-gy8d8285 46 10 of of IN cord-016808-gy8d8285 46 11 the the DT cord-016808-gy8d8285 46 12 cellular cellular JJ cord-016808-gy8d8285 46 13 genetic genetic JJ cord-016808-gy8d8285 46 14 material material NN cord-016808-gy8d8285 46 15 has have VBZ cord-016808-gy8d8285 46 16 evolutionary evolutionary JJ cord-016808-gy8d8285 46 17 relatedness relatedness NN cord-016808-gy8d8285 46 18 to to IN cord-016808-gy8d8285 46 19 the the DT cord-016808-gy8d8285 46 20 genetic genetic JJ cord-016808-gy8d8285 46 21 composition composition NN cord-016808-gy8d8285 46 22 of of IN cord-016808-gy8d8285 46 23 the the DT cord-016808-gy8d8285 46 24 ancient ancient JJ cord-016808-gy8d8285 46 25 world world NN cord-016808-gy8d8285 46 26 of of IN cord-016808-gy8d8285 46 27 RNA RNA NNP cord-016808-gy8d8285 46 28 viruses virus NNS cord-016808-gy8d8285 46 29 . . . cord-016808-gy8d8285 47 1 It -PRON- PRP cord-016808-gy8d8285 47 2 is be VBZ cord-016808-gy8d8285 47 3 estimated estimate VBN cord-016808-gy8d8285 47 4 that that IN cord-016808-gy8d8285 47 5 well well RB cord-016808-gy8d8285 47 6 over over IN cord-016808-gy8d8285 47 7 a a DT cord-016808-gy8d8285 47 8 half half NN cord-016808-gy8d8285 47 9 of of IN cord-016808-gy8d8285 47 10 mammalian mammalian JJ cord-016808-gy8d8285 47 11 genome genome NN cord-016808-gy8d8285 47 12 is be VBZ cord-016808-gy8d8285 47 13 inherited inherit VBN cord-016808-gy8d8285 47 14 from from IN cord-016808-gy8d8285 47 15 viruses virus NNS cord-016808-gy8d8285 47 16 . . . cord-016808-gy8d8285 48 1 In in IN cord-016808-gy8d8285 48 2 other other JJ cord-016808-gy8d8285 48 3 words word NNS cord-016808-gy8d8285 48 4 , , , cord-016808-gy8d8285 48 5 " " '' cord-016808-gy8d8285 48 6 the the DT cord-016808-gy8d8285 48 7 tree tree NN cord-016808-gy8d8285 48 8 of of IN cord-016808-gy8d8285 48 9 life life NN cord-016808-gy8d8285 48 10 and and CC cord-016808-gy8d8285 48 11 its -PRON- PRP$ cord-016808-gy8d8285 48 12 root root NN cord-016808-gy8d8285 48 13 are be VBP cord-016808-gy8d8285 48 14 immersed immerse VBN cord-016808-gy8d8285 48 15 in in IN cord-016808-gy8d8285 48 16 a a DT cord-016808-gy8d8285 48 17 viral viral JJ cord-016808-gy8d8285 48 18 ocean ocean NN cord-016808-gy8d8285 48 19 " " '' cord-016808-gy8d8285 48 20 ( ( -LRB- cord-016808-gy8d8285 48 21 Bamford Bamford NNP cord-016808-gy8d8285 48 22 , , , cord-016808-gy8d8285 48 23 2003 2003 CD cord-016808-gy8d8285 48 24 ) ) -RRB- cord-016808-gy8d8285 48 25 . . . cord-016808-gy8d8285 49 1 The the DT cord-016808-gy8d8285 49 2 above above JJ cord-016808-gy8d8285 49 3 scenarios scenario NNS cord-016808-gy8d8285 49 4 also also RB cord-016808-gy8d8285 49 5 suggest suggest VBP cord-016808-gy8d8285 49 6 that that IN cord-016808-gy8d8285 49 7 modern modern JJ cord-016808-gy8d8285 49 8 viruses virus NNS cord-016808-gy8d8285 49 9 have have VBP cord-016808-gy8d8285 49 10 inherited inherit VBN cord-016808-gy8d8285 49 11 molecular molecular JJ cord-016808-gy8d8285 49 12 mechanisms mechanism NNS cord-016808-gy8d8285 49 13 that that WDT cord-016808-gy8d8285 49 14 have have VBP cord-016808-gy8d8285 49 15 disappeared disappear VBN cord-016808-gy8d8285 49 16 from from IN cord-016808-gy8d8285 49 17 modern modern JJ cord-016808-gy8d8285 49 18 DNA dna NN cord-016808-gy8d8285 49 19 cells cell NNS cord-016808-gy8d8285 49 20 . . . cord-016808-gy8d8285 50 1 That that DT cord-016808-gy8d8285 50 2 is be VBZ cord-016808-gy8d8285 50 3 why why WRB cord-016808-gy8d8285 50 4 transcription transcription NN cord-016808-gy8d8285 50 5 and and CC cord-016808-gy8d8285 50 6 replication replication NN cord-016808-gy8d8285 50 7 mechanisms mechanism NNS cord-016808-gy8d8285 50 8 in in IN cord-016808-gy8d8285 50 9 the the DT cord-016808-gy8d8285 50 10 viral viral JJ cord-016808-gy8d8285 50 11 world world NN cord-016808-gy8d8285 50 12 are be VBP cord-016808-gy8d8285 50 13 more more RBR cord-016808-gy8d8285 50 14 diverse diverse JJ cord-016808-gy8d8285 50 15 than than IN cord-016808-gy8d8285 50 16 those those DT cord-016808-gy8d8285 50 17 in in IN cord-016808-gy8d8285 50 18 the the DT cord-016808-gy8d8285 50 19 cellular cellular JJ cord-016808-gy8d8285 50 20 world world NN cord-016808-gy8d8285 50 21 . . . cord-016808-gy8d8285 51 1 It -PRON- PRP cord-016808-gy8d8285 51 2 can can MD cord-016808-gy8d8285 51 3 not not RB cord-016808-gy8d8285 51 4 be be VB cord-016808-gy8d8285 51 5 excluded exclude VBN cord-016808-gy8d8285 51 6 that that IN cord-016808-gy8d8285 51 7 many many JJ cord-016808-gy8d8285 51 8 yet yet CC cord-016808-gy8d8285 51 9 unknown unknown JJ cord-016808-gy8d8285 51 10 molecular molecular JJ cord-016808-gy8d8285 51 11 mechanisms mechanism NNS cord-016808-gy8d8285 51 12 exist exist VBP cord-016808-gy8d8285 51 13 in in IN cord-016808-gy8d8285 51 14 the the DT cord-016808-gy8d8285 51 15 current current JJ cord-016808-gy8d8285 51 16 viral viral JJ cord-016808-gy8d8285 51 17 world world NN cord-016808-gy8d8285 51 18 . . . cord-016808-gy8d8285 52 1 The the DT cord-016808-gy8d8285 52 2 exploration exploration NN cord-016808-gy8d8285 52 3 of of IN cord-016808-gy8d8285 52 4 the the DT cord-016808-gy8d8285 52 5 viral viral JJ cord-016808-gy8d8285 52 6 diversity diversity NN cord-016808-gy8d8285 52 7 is be VBZ cord-016808-gy8d8285 52 8 one one CD cord-016808-gy8d8285 52 9 of of IN cord-016808-gy8d8285 52 10 the the DT cord-016808-gy8d8285 52 11 major major JJ cord-016808-gy8d8285 52 12 challenges challenge NNS cord-016808-gy8d8285 52 13 of of IN cord-016808-gy8d8285 52 14 biology biology NN cord-016808-gy8d8285 52 15 in in IN cord-016808-gy8d8285 52 16 this this DT cord-016808-gy8d8285 52 17 century century NN cord-016808-gy8d8285 52 18 . . . cord-016808-gy8d8285 53 1 After after IN cord-016808-gy8d8285 53 2 their -PRON- PRP$ cord-016808-gy8d8285 53 3 " " `` cord-016808-gy8d8285 53 4 birth birth NN cord-016808-gy8d8285 53 5 " " '' cord-016808-gy8d8285 53 6 , , , cord-016808-gy8d8285 53 7 viral viral JJ cord-016808-gy8d8285 53 8 genomes genome NNS cord-016808-gy8d8285 53 9 had have VBD cord-016808-gy8d8285 53 10 been be VBN cord-016808-gy8d8285 53 11 and and CC cord-016808-gy8d8285 53 12 are be VBP cord-016808-gy8d8285 53 13 still still RB cord-016808-gy8d8285 53 14 evolving evolve VBG cord-016808-gy8d8285 53 15 by by IN cord-016808-gy8d8285 53 16 accumulation accumulation NN cord-016808-gy8d8285 53 17 of of IN cord-016808-gy8d8285 53 18 point point NN cord-016808-gy8d8285 53 19 mutations mutation NNS cord-016808-gy8d8285 53 20 and and CC cord-016808-gy8d8285 53 21 genome genome NN cord-016808-gy8d8285 53 22 rearrangements rearrangement NNS cord-016808-gy8d8285 53 23 ( ( -LRB- cord-016808-gy8d8285 53 24 duplications duplication NNS cord-016808-gy8d8285 53 25 , , , cord-016808-gy8d8285 53 26 deletions deletion NNS cord-016808-gy8d8285 53 27 , , , cord-016808-gy8d8285 53 28 recombination recombination NN cord-016808-gy8d8285 53 29 ) ) -RRB- cord-016808-gy8d8285 53 30 . . . cord-016808-gy8d8285 54 1 The the DT cord-016808-gy8d8285 54 2 frequency frequency NN cord-016808-gy8d8285 54 3 of of IN cord-016808-gy8d8285 54 4 mutations mutation NNS cord-016808-gy8d8285 54 5 in in IN cord-016808-gy8d8285 54 6 DNA dna NN cord-016808-gy8d8285 54 7 viruses virus NNS cord-016808-gy8d8285 54 8 may may MD cord-016808-gy8d8285 54 9 be be VB cord-016808-gy8d8285 54 10 several several JJ cord-016808-gy8d8285 54 11 orders order NNS cord-016808-gy8d8285 54 12 of of IN cord-016808-gy8d8285 54 13 magnitude magnitude NN cord-016808-gy8d8285 54 14 lower low JJR cord-016808-gy8d8285 54 15 than than IN cord-016808-gy8d8285 54 16 in in IN cord-016808-gy8d8285 54 17 RNA RNA NNP cord-016808-gy8d8285 54 18 viruses virus NNS cord-016808-gy8d8285 54 19 , , , cord-016808-gy8d8285 54 20 whose whose WP$ cord-016808-gy8d8285 54 21 replicative replicative JJ cord-016808-gy8d8285 54 22 enzyme enzyme NN cord-016808-gy8d8285 54 23 , , , cord-016808-gy8d8285 54 24 the the DT cord-016808-gy8d8285 54 25 RNA RNA NNP cord-016808-gy8d8285 54 26 - - HYPH cord-016808-gy8d8285 54 27 dependent dependent JJ cord-016808-gy8d8285 54 28 RNA RNA NNP cord-016808-gy8d8285 54 29 polymerase polymerase NN cord-016808-gy8d8285 54 30 , , , cord-016808-gy8d8285 54 31 lacks lack VBZ cord-016808-gy8d8285 54 32 proof proof NN cord-016808-gy8d8285 54 33 - - HYPH cord-016808-gy8d8285 54 34 reading read VBG cord-016808-gy8d8285 54 35 activity activity NN cord-016808-gy8d8285 54 36 . . . cord-016808-gy8d8285 55 1 The the DT cord-016808-gy8d8285 55 2 error error NN cord-016808-gy8d8285 55 3 frequency frequency NN cord-016808-gy8d8285 55 4 in in IN cord-016808-gy8d8285 55 5 RNA RNA NNP cord-016808-gy8d8285 55 6 viruses virus NNS cord-016808-gy8d8285 55 7 is be VBZ cord-016808-gy8d8285 55 8 also also RB cord-016808-gy8d8285 55 9 variable variable JJ cord-016808-gy8d8285 55 10 , , , cord-016808-gy8d8285 55 11 and and CC cord-016808-gy8d8285 55 12 , , , cord-016808-gy8d8285 55 13 in in IN cord-016808-gy8d8285 55 14 some some DT cord-016808-gy8d8285 55 15 of of IN cord-016808-gy8d8285 55 16 them -PRON- PRP cord-016808-gy8d8285 55 17 , , , cord-016808-gy8d8285 55 18 any any DT cord-016808-gy8d8285 55 19 newly newly RB cord-016808-gy8d8285 55 20 synthesized synthesize VBN cord-016808-gy8d8285 55 21 genomic genomic JJ cord-016808-gy8d8285 55 22 RNA rna NN cord-016808-gy8d8285 55 23 molecule molecule NN cord-016808-gy8d8285 55 24 contains contain VBZ cord-016808-gy8d8285 55 25 on on IN cord-016808-gy8d8285 55 26 an an DT cord-016808-gy8d8285 55 27 average average NN cord-016808-gy8d8285 55 28 a a DT cord-016808-gy8d8285 55 29 mutation mutation NN cord-016808-gy8d8285 55 30 . . . cord-016808-gy8d8285 56 1 Such such JJ cord-016808-gy8d8285 56 2 viruses virus NNS cord-016808-gy8d8285 56 3 exist exist VBP cord-016808-gy8d8285 56 4 on on IN cord-016808-gy8d8285 56 5 the the DT cord-016808-gy8d8285 56 6 edge edge NN cord-016808-gy8d8285 56 7 of of IN cord-016808-gy8d8285 56 8 mutational mutational JJ cord-016808-gy8d8285 56 9 catastrophe catastrophe NN cord-016808-gy8d8285 56 10 : : : cord-016808-gy8d8285 56 11 even even RB cord-016808-gy8d8285 56 12 a a DT cord-016808-gy8d8285 56 13 few few JJ cord-016808-gy8d8285 56 14 - - HYPH cord-016808-gy8d8285 56 15 fold fold JJ cord-016808-gy8d8285 56 16 increase increase NN cord-016808-gy8d8285 56 17 in in IN cord-016808-gy8d8285 56 18 the the DT cord-016808-gy8d8285 56 19 error error NN cord-016808-gy8d8285 56 20 frequency frequency NN cord-016808-gy8d8285 56 21 may may MD cord-016808-gy8d8285 56 22 result result VB cord-016808-gy8d8285 56 23 in in IN cord-016808-gy8d8285 56 24 population population NN cord-016808-gy8d8285 56 25 extinction extinction NN cord-016808-gy8d8285 56 26 . . . cord-016808-gy8d8285 57 1 Nevertheless nevertheless RB cord-016808-gy8d8285 57 2 , , , cord-016808-gy8d8285 57 3 a a DT cord-016808-gy8d8285 57 4 certain certain JJ cord-016808-gy8d8285 57 5 level level NN cord-016808-gy8d8285 57 6 of of IN cord-016808-gy8d8285 57 7 replicative replicative JJ cord-016808-gy8d8285 57 8 infidelity infidelity NN cord-016808-gy8d8285 57 9 is be VBZ cord-016808-gy8d8285 57 10 highly highly RB cord-016808-gy8d8285 57 11 advantageous advantageous JJ cord-016808-gy8d8285 57 12 for for IN cord-016808-gy8d8285 57 13 viruses virus NNS cord-016808-gy8d8285 57 14 since since IN cord-016808-gy8d8285 57 15 it -PRON- PRP cord-016808-gy8d8285 57 16 confers confer VBZ cord-016808-gy8d8285 57 17 a a DT cord-016808-gy8d8285 57 18 potential potential NN cord-016808-gy8d8285 57 19 for for IN cord-016808-gy8d8285 57 20 changing change VBG cord-016808-gy8d8285 57 21 and and CC cord-016808-gy8d8285 57 22 adaptation adaptation NN cord-016808-gy8d8285 57 23 . . . cord-016808-gy8d8285 58 1 For for IN cord-016808-gy8d8285 58 2 example example NN cord-016808-gy8d8285 58 3 , , , cord-016808-gy8d8285 58 4 replicative replicative JJ cord-016808-gy8d8285 58 5 errors error NNS cord-016808-gy8d8285 58 6 are be VBP cord-016808-gy8d8285 58 7 one one CD cord-016808-gy8d8285 58 8 of of IN cord-016808-gy8d8285 58 9 the the DT cord-016808-gy8d8285 58 10 major major JJ cord-016808-gy8d8285 58 11 factors factor NNS cord-016808-gy8d8285 58 12 contributing contribute VBG cord-016808-gy8d8285 58 13 to to IN cord-016808-gy8d8285 58 14 the the DT cord-016808-gy8d8285 58 15 development development NN cord-016808-gy8d8285 58 16 of of IN cord-016808-gy8d8285 58 17 drug drug NN cord-016808-gy8d8285 58 18 - - HYPH cord-016808-gy8d8285 58 19 resistance resistance NN cord-016808-gy8d8285 58 20 and and CC cord-016808-gy8d8285 58 21 hence hence RB cord-016808-gy8d8285 58 22 to to IN cord-016808-gy8d8285 58 23 the the DT cord-016808-gy8d8285 58 24 scarcity scarcity NN cord-016808-gy8d8285 58 25 of of IN cord-016808-gy8d8285 58 26 efficacious efficacious JJ cord-016808-gy8d8285 58 27 antiviral antiviral JJ cord-016808-gy8d8285 58 28 drugs drug NNS cord-016808-gy8d8285 58 29 . . . cord-016808-gy8d8285 59 1 Interestingly interestingly RB cord-016808-gy8d8285 59 2 , , , cord-016808-gy8d8285 59 3 a a DT cord-016808-gy8d8285 59 4 single single JJ cord-016808-gy8d8285 59 5 point point NN cord-016808-gy8d8285 59 6 mutation mutation NN cord-016808-gy8d8285 59 7 in in IN cord-016808-gy8d8285 59 8 the the DT cord-016808-gy8d8285 59 9 poliovirus poliovirus NN cord-016808-gy8d8285 59 10 RNA rna NN cord-016808-gy8d8285 59 11 - - HYPH cord-016808-gy8d8285 59 12 dependent dependent JJ cord-016808-gy8d8285 59 13 RNA RNA NNP cord-016808-gy8d8285 59 14 polymerase polymerase NN cord-016808-gy8d8285 59 15 increases increase VBZ cord-016808-gy8d8285 59 16 its -PRON- PRP$ cord-016808-gy8d8285 59 17 fidelity fidelity NN cord-016808-gy8d8285 59 18 several several RB cord-016808-gy8d8285 59 19 - - HYPH cord-016808-gy8d8285 59 20 fold fold NN cord-016808-gy8d8285 59 21 . . . cord-016808-gy8d8285 60 1 However however RB cord-016808-gy8d8285 60 2 , , , cord-016808-gy8d8285 60 3 the the DT cord-016808-gy8d8285 60 4 more more RBR cord-016808-gy8d8285 60 5 accurate accurate JJ cord-016808-gy8d8285 60 6 mutant mutant NN cord-016808-gy8d8285 60 7 is be VBZ cord-016808-gy8d8285 60 8 less less RBR cord-016808-gy8d8285 60 9 fit fit JJ cord-016808-gy8d8285 60 10 : : : cord-016808-gy8d8285 60 11 not not RB cord-016808-gy8d8285 60 12 only only RB cord-016808-gy8d8285 60 13 it -PRON- PRP cord-016808-gy8d8285 60 14 develops develop VBZ cord-016808-gy8d8285 60 15 drug drug NN cord-016808-gy8d8285 60 16 - - HYPH cord-016808-gy8d8285 60 17 resistance resistance NN cord-016808-gy8d8285 60 18 less less RBR cord-016808-gy8d8285 60 19 readily readily RB cord-016808-gy8d8285 60 20 , , , cord-016808-gy8d8285 60 21 but but CC cord-016808-gy8d8285 60 22 is be VBZ cord-016808-gy8d8285 60 23 also also RB cord-016808-gy8d8285 60 24 less less JJR cord-016808-gy8d8285 60 25 neurovirulent neurovirulent NN cord-016808-gy8d8285 60 26 Kirkegaard Kirkegaard NNP cord-016808-gy8d8285 60 27 , , , cord-016808-gy8d8285 60 28 2003 2003 CD cord-016808-gy8d8285 60 29 , , , cord-016808-gy8d8285 60 30 2005 2005 CD cord-016808-gy8d8285 60 31 ; ; : cord-016808-gy8d8285 60 32 Vignuzzi Vignuzzi NNP cord-016808-gy8d8285 60 33 et et NNP cord-016808-gy8d8285 60 34 al al NNP cord-016808-gy8d8285 60 35 . . NNP cord-016808-gy8d8285 60 36 , , , cord-016808-gy8d8285 60 37 2006 2006 CD cord-016808-gy8d8285 60 38 ) ) -RRB- cord-016808-gy8d8285 60 39 . . . cord-016808-gy8d8285 61 1 A a DT cord-016808-gy8d8285 61 2 heterogeneous heterogeneous JJ cord-016808-gy8d8285 61 3 population population NN cord-016808-gy8d8285 61 4 , , , cord-016808-gy8d8285 61 5 as as IN cord-016808-gy8d8285 61 6 a a DT cord-016808-gy8d8285 61 7 group group NN cord-016808-gy8d8285 61 8 , , , cord-016808-gy8d8285 61 9 may may MD cord-016808-gy8d8285 61 10 have have VB cord-016808-gy8d8285 61 11 advantages advantage NNS cord-016808-gy8d8285 61 12 over over IN cord-016808-gy8d8285 61 13 a a DT cord-016808-gy8d8285 61 14 more more RBR cord-016808-gy8d8285 61 15 homogeneous homogeneous JJ cord-016808-gy8d8285 61 16 population population NN cord-016808-gy8d8285 61 17 . . . cord-016808-gy8d8285 62 1 The the DT cord-016808-gy8d8285 62 2 advantages advantage NNS cord-016808-gy8d8285 62 3 may may MD cord-016808-gy8d8285 62 4 be be VB cord-016808-gy8d8285 62 5 due due JJ cord-016808-gy8d8285 62 6 not not RB cord-016808-gy8d8285 62 7 only only RB cord-016808-gy8d8285 62 8 to to IN cord-016808-gy8d8285 62 9 a a DT cord-016808-gy8d8285 62 10 greater great JJR cord-016808-gy8d8285 62 11 potential potential NN cord-016808-gy8d8285 62 12 for for IN cord-016808-gy8d8285 62 13 adaptation adaptation NN cord-016808-gy8d8285 62 14 but but CC cord-016808-gy8d8285 62 15 also also RB cord-016808-gy8d8285 62 16 to to IN cord-016808-gy8d8285 62 17 the the DT cord-016808-gy8d8285 62 18 possibility possibility NN cord-016808-gy8d8285 62 19 of of IN cord-016808-gy8d8285 62 20 mutual mutual JJ cord-016808-gy8d8285 62 21 cooperation cooperation NN cord-016808-gy8d8285 62 22 . . . cord-016808-gy8d8285 63 1 The the DT cord-016808-gy8d8285 63 2 genome genome NN cord-016808-gy8d8285 63 3 instability instability NN cord-016808-gy8d8285 63 4 challenges challenge VBZ cord-016808-gy8d8285 63 5 the the DT cord-016808-gy8d8285 63 6 very very JJ cord-016808-gy8d8285 63 7 identity identity NN cord-016808-gy8d8285 63 8 of of IN cord-016808-gy8d8285 63 9 viruses virus NNS cord-016808-gy8d8285 63 10 : : : cord-016808-gy8d8285 64 1 how how WRB cord-016808-gy8d8285 64 2 does do VBZ cord-016808-gy8d8285 64 3 virus virus NN cord-016808-gy8d8285 64 4 X X NNS cord-016808-gy8d8285 64 5 remain remain VBP cord-016808-gy8d8285 64 6 virus virus NN cord-016808-gy8d8285 64 7 X x NN cord-016808-gy8d8285 64 8 ? ? . cord-016808-gy8d8285 65 1 However however RB cord-016808-gy8d8285 65 2 , , , cord-016808-gy8d8285 65 3 despite despite IN cord-016808-gy8d8285 65 4 their -PRON- PRP$ cord-016808-gy8d8285 65 5 intrinsic intrinsic JJ cord-016808-gy8d8285 65 6 instability instability NN cord-016808-gy8d8285 65 7 , , , cord-016808-gy8d8285 65 8 viral viral JJ cord-016808-gy8d8285 65 9 genomes genome NNS cord-016808-gy8d8285 65 10 , , , cord-016808-gy8d8285 65 11 even even RB cord-016808-gy8d8285 65 12 in in IN cord-016808-gy8d8285 65 13 the the DT cord-016808-gy8d8285 65 14 extreme extreme JJ cord-016808-gy8d8285 65 15 case case NN cord-016808-gy8d8285 65 16 of of IN cord-016808-gy8d8285 65 17 RNA RNA NNP cord-016808-gy8d8285 65 18 viruses virus NNS cord-016808-gy8d8285 65 19 , , , cord-016808-gy8d8285 65 20 are be VBP cord-016808-gy8d8285 65 21 remarkably remarkably RB cord-016808-gy8d8285 65 22 robust robust JJ cord-016808-gy8d8285 65 23 . . . cord-016808-gy8d8285 66 1 Several several JJ cord-016808-gy8d8285 66 2 factors factor NNS cord-016808-gy8d8285 66 3 contribute contribute VBP cord-016808-gy8d8285 66 4 to to IN cord-016808-gy8d8285 66 5 the the DT cord-016808-gy8d8285 66 6 genetic genetic JJ cord-016808-gy8d8285 66 7 stability stability NN cord-016808-gy8d8285 66 8 of of IN cord-016808-gy8d8285 66 9 viruses virus NNS cord-016808-gy8d8285 66 10 in in IN cord-016808-gy8d8285 66 11 nature nature NN cord-016808-gy8d8285 66 12 . . . cord-016808-gy8d8285 67 1 Adverse adverse JJ cord-016808-gy8d8285 67 2 mutations mutation NNS cord-016808-gy8d8285 67 3 are be VBP cord-016808-gy8d8285 67 4 eliminated eliminate VBN cord-016808-gy8d8285 67 5 by by IN cord-016808-gy8d8285 67 6 negative negative JJ cord-016808-gy8d8285 67 7 selection selection NN cord-016808-gy8d8285 67 8 , , , cord-016808-gy8d8285 67 9 whereas whereas IN cord-016808-gy8d8285 67 10 fitness fitness NN cord-016808-gy8d8285 67 11 - - HYPH cord-016808-gy8d8285 67 12 increasing increase VBG cord-016808-gy8d8285 67 13 mutations mutation NNS cord-016808-gy8d8285 67 14 are be VBP cord-016808-gy8d8285 67 15 nearly nearly RB cord-016808-gy8d8285 67 16 not not RB cord-016808-gy8d8285 67 17 - - HYPH cord-016808-gy8d8285 67 18 existing exist VBG cord-016808-gy8d8285 67 19 in in IN cord-016808-gy8d8285 67 20 constant constant JJ cord-016808-gy8d8285 67 21 environment environment NN cord-016808-gy8d8285 67 22 . . . cord-016808-gy8d8285 68 1 Adaptive adaptive JJ cord-016808-gy8d8285 68 2 mutations mutation NNS cord-016808-gy8d8285 68 3 may may MD cord-016808-gy8d8285 68 4 be be VB cord-016808-gy8d8285 68 5 positively positively RB cord-016808-gy8d8285 68 6 selected select VBN cord-016808-gy8d8285 68 7 upon upon IN cord-016808-gy8d8285 68 8 environmental environmental JJ cord-016808-gy8d8285 68 9 changes change NNS cord-016808-gy8d8285 68 10 ( ( -LRB- cord-016808-gy8d8285 68 11 including include VBG cord-016808-gy8d8285 68 12 infection infection NN cord-016808-gy8d8285 68 13 of of IN cord-016808-gy8d8285 68 14 a a DT cord-016808-gy8d8285 68 15 novel novel JJ cord-016808-gy8d8285 68 16 host host NN cord-016808-gy8d8285 68 17 species specie NNS cord-016808-gy8d8285 68 18 ) ) -RRB- cord-016808-gy8d8285 68 19 . . . cord-016808-gy8d8285 69 1 The the DT cord-016808-gy8d8285 69 2 only only JJ cord-016808-gy8d8285 69 3 major major JJ cord-016808-gy8d8285 69 4 factor factor NN cord-016808-gy8d8285 69 5 favoring favor VBG cord-016808-gy8d8285 69 6 accumulation accumulation NN cord-016808-gy8d8285 69 7 of of IN cord-016808-gy8d8285 69 8 neutral neutral JJ cord-016808-gy8d8285 69 9 mutations mutation NNS cord-016808-gy8d8285 69 10 is be VBZ cord-016808-gy8d8285 69 11 bottlenecking bottleneck VBG cord-016808-gy8d8285 69 12 ( ( -LRB- cord-016808-gy8d8285 69 13 stochastic stochastic JJ cord-016808-gy8d8285 69 14 picking pick VBG cord-016808-gy8d8285 69 15 up up RP cord-016808-gy8d8285 69 16 a a DT cord-016808-gy8d8285 69 17 single single JJ cord-016808-gy8d8285 69 18 viral viral JJ cord-016808-gy8d8285 69 19 particle particle NN cord-016808-gy8d8285 69 20 , , , cord-016808-gy8d8285 69 21 or or CC cord-016808-gy8d8285 69 22 a a DT cord-016808-gy8d8285 69 23 few few JJ cord-016808-gy8d8285 69 24 of of IN cord-016808-gy8d8285 69 25 them -PRON- PRP cord-016808-gy8d8285 69 26 , , , cord-016808-gy8d8285 69 27 from from IN cord-016808-gy8d8285 69 28 a a DT cord-016808-gy8d8285 69 29 heterogeneous heterogeneous JJ cord-016808-gy8d8285 69 30 population population NN cord-016808-gy8d8285 69 31 ) ) -RRB- cord-016808-gy8d8285 69 32 , , , cord-016808-gy8d8285 69 33 which which WDT cord-016808-gy8d8285 69 34 is be VBZ cord-016808-gy8d8285 69 35 quite quite RB cord-016808-gy8d8285 69 36 common common JJ cord-016808-gy8d8285 69 37 during during IN cord-016808-gy8d8285 69 38 natural natural JJ cord-016808-gy8d8285 69 39 transmission transmission NN cord-016808-gy8d8285 69 40 of of IN cord-016808-gy8d8285 69 41 viruses virus NNS cord-016808-gy8d8285 69 42 . . . cord-016808-gy8d8285 70 1 Consecutive consecutive JJ cord-016808-gy8d8285 70 2 bottlenecking bottleneck VBG cord-016808-gy8d8285 70 3 events event NNS cord-016808-gy8d8285 70 4 may may MD cord-016808-gy8d8285 70 5 result result VB cord-016808-gy8d8285 70 6 in in IN cord-016808-gy8d8285 70 7 a a DT cord-016808-gy8d8285 70 8 more more RBR cord-016808-gy8d8285 70 9 or or CC cord-016808-gy8d8285 70 10 less less RBR cord-016808-gy8d8285 70 11 marked marked JJ cord-016808-gy8d8285 70 12 decrease decrease NN cord-016808-gy8d8285 70 13 in in IN cord-016808-gy8d8285 70 14 viral viral JJ cord-016808-gy8d8285 70 15 fitness fitness NN cord-016808-gy8d8285 70 16 ( ( -LRB- cord-016808-gy8d8285 70 17 the the DT cord-016808-gy8d8285 70 18 so so RB cord-016808-gy8d8285 70 19 called call VBN cord-016808-gy8d8285 70 20 Muller Muller NNP cord-016808-gy8d8285 70 21 's 's POS cord-016808-gy8d8285 70 22 ratchet ratchet NN cord-016808-gy8d8285 70 23 ) ) -RRB- cord-016808-gy8d8285 70 24 because because IN cord-016808-gy8d8285 70 25 viral viral JJ cord-016808-gy8d8285 70 26 genomes genome NNS cord-016808-gy8d8285 70 27 picked pick VBN cord-016808-gy8d8285 70 28 up up RP cord-016808-gy8d8285 70 29 by by IN cord-016808-gy8d8285 70 30 chance chance NN cord-016808-gy8d8285 70 31 from from IN cord-016808-gy8d8285 70 32 a a DT cord-016808-gy8d8285 70 33 heterogeneous heterogeneous JJ cord-016808-gy8d8285 70 34 population population NN cord-016808-gy8d8285 70 35 may may MD cord-016808-gy8d8285 70 36 well well RB cord-016808-gy8d8285 70 37 harbor harbor VB cord-016808-gy8d8285 70 38 detrimental detrimental JJ cord-016808-gy8d8285 70 39 mutations mutation NNS cord-016808-gy8d8285 70 40 . . . cord-016808-gy8d8285 71 1 To to TO cord-016808-gy8d8285 71 2 what what WDT cord-016808-gy8d8285 71 3 extent extent NN cord-016808-gy8d8285 71 4 is be VBZ cord-016808-gy8d8285 71 5 the the DT cord-016808-gy8d8285 71 6 Muller Muller NNP cord-016808-gy8d8285 71 7 's 's POS cord-016808-gy8d8285 71 8 ratchet ratchet NN cord-016808-gy8d8285 71 9 inevitable inevitable JJ cord-016808-gy8d8285 71 10 and and CC cord-016808-gy8d8285 71 11 irreversible irreversible JJ cord-016808-gy8d8285 71 12 ? ? . cord-016808-gy8d8285 72 1 The the DT cord-016808-gy8d8285 72 2 robustness robustness NN cord-016808-gy8d8285 72 3 of of IN cord-016808-gy8d8285 72 4 viruses virus NNS cord-016808-gy8d8285 72 5 may may MD cord-016808-gy8d8285 72 6 be be VB cord-016808-gy8d8285 72 7 studied study VBN cord-016808-gy8d8285 72 8 experimentally experimentally RB cord-016808-gy8d8285 72 9 by by IN cord-016808-gy8d8285 72 10 damaging damage VBG cord-016808-gy8d8285 72 11 their -PRON- PRP$ cord-016808-gy8d8285 72 12 genome genome NN cord-016808-gy8d8285 72 13 ( ( -LRB- cord-016808-gy8d8285 72 14 e.g. e.g. RB cord-016808-gy8d8285 72 15 , , , cord-016808-gy8d8285 72 16 by by IN cord-016808-gy8d8285 72 17 introducing introduce VBG cord-016808-gy8d8285 72 18 point point NN cord-016808-gy8d8285 72 19 mutations mutation NNS cord-016808-gy8d8285 72 20 or or CC cord-016808-gy8d8285 72 21 deletions deletion NNS cord-016808-gy8d8285 72 22 , , , cord-016808-gy8d8285 72 23 randomization randomization NN cord-016808-gy8d8285 72 24 of of IN cord-016808-gy8d8285 72 25 portions portion NNS cord-016808-gy8d8285 72 26 of of IN cord-016808-gy8d8285 72 27 the the DT cord-016808-gy8d8285 72 28 nucleotide nucleotide JJ cord-016808-gy8d8285 72 29 sequence sequence NN cord-016808-gy8d8285 72 30 , , , cord-016808-gy8d8285 72 31 or or CC cord-016808-gy8d8285 72 32 even even RB cord-016808-gy8d8285 72 33 breaking break VBG cord-016808-gy8d8285 72 34 the the DT cord-016808-gy8d8285 72 35 genome genome NN cord-016808-gy8d8285 72 36 apart apart RB cord-016808-gy8d8285 72 37 ) ) -RRB- cord-016808-gy8d8285 72 38 followed follow VBN cord-016808-gy8d8285 72 39 by by IN cord-016808-gy8d8285 72 40 investigating investigate VBG cord-016808-gy8d8285 72 41 viral viral JJ cord-016808-gy8d8285 72 42 viability viability NN cord-016808-gy8d8285 72 43 and and CC cord-016808-gy8d8285 72 44 fitness fitness NN cord-016808-gy8d8285 72 45 as as RB cord-016808-gy8d8285 72 46 well well RB cord-016808-gy8d8285 72 47 as as IN cord-016808-gy8d8285 72 48 structure structure NN cord-016808-gy8d8285 72 49 and and CC cord-016808-gy8d8285 72 50 stability stability NN cord-016808-gy8d8285 72 51 of of IN cord-016808-gy8d8285 72 52 the the DT cord-016808-gy8d8285 72 53 mutated mutate VBN cord-016808-gy8d8285 72 54 viral viral JJ cord-016808-gy8d8285 72 55 genome genome NN cord-016808-gy8d8285 72 56 . . . cord-016808-gy8d8285 73 1 A a DT cord-016808-gy8d8285 73 2 wealth wealth NN cord-016808-gy8d8285 73 3 of of IN cord-016808-gy8d8285 73 4 relevant relevant JJ cord-016808-gy8d8285 73 5 information information NN cord-016808-gy8d8285 73 6 concerning concern VBG cord-016808-gy8d8285 73 7 numerous numerous JJ cord-016808-gy8d8285 73 8 viruses virus NNS cord-016808-gy8d8285 73 9 has have VBZ cord-016808-gy8d8285 73 10 already already RB cord-016808-gy8d8285 73 11 been be VBN cord-016808-gy8d8285 73 12 accumulated accumulate VBN cord-016808-gy8d8285 73 13 in in IN cord-016808-gy8d8285 73 14 literature literature NN cord-016808-gy8d8285 73 15 . . . cord-016808-gy8d8285 74 1 Some some DT cord-016808-gy8d8285 74 2 examples example NNS cord-016808-gy8d8285 74 3 of of IN cord-016808-gy8d8285 74 4 such such JJ cord-016808-gy8d8285 74 5 " " `` cord-016808-gy8d8285 74 6 interrogation interrogation NN cord-016808-gy8d8285 74 7 under under IN cord-016808-gy8d8285 74 8 torture torture NN cord-016808-gy8d8285 74 9 " " `` cord-016808-gy8d8285 74 10 carried carry VBN cord-016808-gy8d8285 74 11 out out RP cord-016808-gy8d8285 74 12 with with IN cord-016808-gy8d8285 74 13 picornaviruses picornavirus NNS cord-016808-gy8d8285 74 14 in in IN cord-016808-gy8d8285 74 15 the the DT cord-016808-gy8d8285 74 16 author author NN cord-016808-gy8d8285 74 17 's 's POS cord-016808-gy8d8285 74 18 laboratory laboratory NN cord-016808-gy8d8285 74 19 are be VBP cord-016808-gy8d8285 74 20 presented present VBN cord-016808-gy8d8285 74 21 below below RB cord-016808-gy8d8285 74 22 . . . cord-016808-gy8d8285 75 1 The the DT cord-016808-gy8d8285 75 2 Theiler Theiler NNP cord-016808-gy8d8285 75 3 's 's POS cord-016808-gy8d8285 75 4 murine murine JJ cord-016808-gy8d8285 75 5 encephalomyelitis encephalomyelitis NN cord-016808-gy8d8285 75 6 virus virus NN cord-016808-gy8d8285 75 7 ( ( -LRB- cord-016808-gy8d8285 75 8 TMEV TMEV NNP cord-016808-gy8d8285 75 9 ) ) -RRB- cord-016808-gy8d8285 75 10 is be VBZ cord-016808-gy8d8285 75 11 highly highly RB cord-016808-gy8d8285 75 12 pathogenic pathogenic JJ cord-016808-gy8d8285 75 13 for for IN cord-016808-gy8d8285 75 14 mice mouse NNS cord-016808-gy8d8285 75 15 under under IN cord-016808-gy8d8285 75 16 certain certain JJ cord-016808-gy8d8285 75 17 conditions condition NNS cord-016808-gy8d8285 75 18 : : : cord-016808-gy8d8285 75 19 a a DT cord-016808-gy8d8285 75 20 few few JJ cord-016808-gy8d8285 75 21 wild wild JJ cord-016808-gy8d8285 75 22 type type NN cord-016808-gy8d8285 75 23 viral viral JJ cord-016808-gy8d8285 75 24 particles particle NNS cord-016808-gy8d8285 75 25 injected inject VBN cord-016808-gy8d8285 75 26 intracerebrally intracerebrally RB cord-016808-gy8d8285 75 27 kill kill VBP cord-016808-gy8d8285 75 28 mice mouse NNS cord-016808-gy8d8285 75 29 . . . cord-016808-gy8d8285 76 1 For for IN cord-016808-gy8d8285 76 2 efficient efficient JJ cord-016808-gy8d8285 76 3 viral viral JJ cord-016808-gy8d8285 76 4 reproduction reproduction NN cord-016808-gy8d8285 76 5 in in IN cord-016808-gy8d8285 76 6 the the DT cord-016808-gy8d8285 76 7 brain brain NN cord-016808-gy8d8285 76 8 , , , cord-016808-gy8d8285 76 9 interaction interaction NN cord-016808-gy8d8285 76 10 of of IN cord-016808-gy8d8285 76 11 a a DT cord-016808-gy8d8285 76 12 translational translational JJ cord-016808-gy8d8285 76 13 control control NN cord-016808-gy8d8285 76 14 element element NN cord-016808-gy8d8285 76 15 ( ( -LRB- cord-016808-gy8d8285 76 16 IRES IRES NNP cord-016808-gy8d8285 76 17 ) ) -RRB- cord-016808-gy8d8285 76 18 in in IN cord-016808-gy8d8285 76 19 the the DT cord-016808-gy8d8285 76 20 5 5 CD cord-016808-gy8d8285 76 21 -noncoding -noncoding NN cord-016808-gy8d8285 76 22 region region NN cord-016808-gy8d8285 76 23 ( ( -LRB- cord-016808-gy8d8285 76 24 5NCR 5ncr CD cord-016808-gy8d8285 76 25 ) ) -RRB- cord-016808-gy8d8285 76 26 of of IN cord-016808-gy8d8285 76 27 the the DT cord-016808-gy8d8285 76 28 viral viral JJ cord-016808-gy8d8285 76 29 RNA RNA NNP cord-016808-gy8d8285 76 30 with with IN cord-016808-gy8d8285 76 31 a a DT cord-016808-gy8d8285 76 32 host host NN cord-016808-gy8d8285 76 33 protein protein NN cord-016808-gy8d8285 76 34 , , , cord-016808-gy8d8285 76 35 neural neural JJ cord-016808-gy8d8285 76 36 polypyrimidine polypyrimidine JJ cord-016808-gy8d8285 76 37 tract tract NN cord-016808-gy8d8285 76 38 - - HYPH cord-016808-gy8d8285 76 39 binding bind VBG cord-016808-gy8d8285 76 40 protein protein NN cord-016808-gy8d8285 76 41 ( ( -LRB- cord-016808-gy8d8285 76 42 nPTB nptb NN cord-016808-gy8d8285 76 43 ) ) -RRB- cord-016808-gy8d8285 76 44 , , , cord-016808-gy8d8285 76 45 is be VBZ cord-016808-gy8d8285 76 46 essential essential JJ cord-016808-gy8d8285 76 47 ( ( -LRB- cord-016808-gy8d8285 77 1 Pilipenko Pilipenko NNP cord-016808-gy8d8285 77 2 et et NNP cord-016808-gy8d8285 77 3 al al NNP cord-016808-gy8d8285 77 4 . . NNP cord-016808-gy8d8285 77 5 , , , cord-016808-gy8d8285 77 6 2001 2001 CD cord-016808-gy8d8285 77 7 ) ) -RRB- cord-016808-gy8d8285 77 8 . . . cord-016808-gy8d8285 78 1 A a DT cord-016808-gy8d8285 78 2 single single JJ cord-016808-gy8d8285 78 3 point point NN cord-016808-gy8d8285 78 4 mutation mutation NN cord-016808-gy8d8285 78 5 in in IN cord-016808-gy8d8285 78 6 one one CD cord-016808-gy8d8285 78 7 of of IN cord-016808-gy8d8285 78 8 the the DT cord-016808-gy8d8285 78 9 nPTB nptb NN cord-016808-gy8d8285 78 10 - - HYPH cord-016808-gy8d8285 78 11 binding bind VBG cord-016808-gy8d8285 78 12 sites site NNS cord-016808-gy8d8285 78 13 of of IN cord-016808-gy8d8285 78 14 the the DT cord-016808-gy8d8285 78 15 viral viral JJ cord-016808-gy8d8285 78 16 RNA RNA NNP cord-016808-gy8d8285 78 17 led lead VBD cord-016808-gy8d8285 78 18 to to IN cord-016808-gy8d8285 78 19 a a DT cord-016808-gy8d8285 78 20 dramatic dramatic JJ cord-016808-gy8d8285 78 21 decrease decrease NN cord-016808-gy8d8285 78 22 in in IN cord-016808-gy8d8285 78 23 viral viral JJ cord-016808-gy8d8285 78 24 neurovirulence neurovirulence NN cord-016808-gy8d8285 78 25 : : : cord-016808-gy8d8285 78 26 ∼10 ∼10 NNP cord-016808-gy8d8285 78 27 4 4 CD cord-016808-gy8d8285 78 28 more more JJR cord-016808-gy8d8285 78 29 mutant mutant JJ cord-016808-gy8d8285 78 30 particles particle NNS cord-016808-gy8d8285 78 31 were be VBD cord-016808-gy8d8285 78 32 now now RB cord-016808-gy8d8285 78 33 needed need VBN cord-016808-gy8d8285 78 34 to to TO cord-016808-gy8d8285 78 35 kill kill VB cord-016808-gy8d8285 78 36 a a DT cord-016808-gy8d8285 78 37 mouse mouse NN cord-016808-gy8d8285 78 38 . . . cord-016808-gy8d8285 79 1 However however RB cord-016808-gy8d8285 79 2 , , , cord-016808-gy8d8285 79 3 wild wild JJ cord-016808-gy8d8285 79 4 - - HYPH cord-016808-gy8d8285 79 5 type type NN cord-016808-gy8d8285 79 6 level level NN cord-016808-gy8d8285 79 7 of of IN cord-016808-gy8d8285 79 8 neurovirulence neurovirulence NN cord-016808-gy8d8285 79 9 could could MD cord-016808-gy8d8285 79 10 readily readily RB cord-016808-gy8d8285 79 11 be be VB cord-016808-gy8d8285 79 12 restored restore VBN cord-016808-gy8d8285 79 13 by by IN cord-016808-gy8d8285 79 14 either either DT cord-016808-gy8d8285 79 15 reversion reversion NN cord-016808-gy8d8285 79 16 or or CC cord-016808-gy8d8285 79 17 pseudoreversions pseudoreversion NNS cord-016808-gy8d8285 79 18 during during IN cord-016808-gy8d8285 79 19 viral viral JJ cord-016808-gy8d8285 79 20 reproduction reproduction NN cord-016808-gy8d8285 79 21 , , , cord-016808-gy8d8285 79 22 e.g. e.g. RB cord-016808-gy8d8285 79 23 , , , cord-016808-gy8d8285 79 24 by by IN cord-016808-gy8d8285 79 25 generation generation NN cord-016808-gy8d8285 79 26 of of IN cord-016808-gy8d8285 79 27 a a DT cord-016808-gy8d8285 79 28 new new JJ cord-016808-gy8d8285 79 29 nPTB nptb NN cord-016808-gy8d8285 79 30 - - HYPH cord-016808-gy8d8285 79 31 binding bind VBG cord-016808-gy8d8285 79 32 site site NN cord-016808-gy8d8285 79 33 in in IN cord-016808-gy8d8285 79 34 the the DT cord-016808-gy8d8285 79 35 viral viral JJ cord-016808-gy8d8285 79 36 5NCR 5ncr CD cord-016808-gy8d8285 79 37 due due IN cord-016808-gy8d8285 79 38 to to IN cord-016808-gy8d8285 79 39 a a DT cord-016808-gy8d8285 79 40 compensating compensating NN cord-016808-gy8d8285 79 41 point point NN cord-016808-gy8d8285 79 42 mutation mutation NN cord-016808-gy8d8285 80 1 ( ( -LRB- cord-016808-gy8d8285 80 2 Pilipenko Pilipenko NNP cord-016808-gy8d8285 80 3 et et NNP cord-016808-gy8d8285 80 4 al al NNP cord-016808-gy8d8285 80 5 . . NNP cord-016808-gy8d8285 80 6 , , , cord-016808-gy8d8285 80 7 2001 2001 CD cord-016808-gy8d8285 80 8 ) ) -RRB- cord-016808-gy8d8285 80 9 . . . cord-016808-gy8d8285 81 1 An an DT cord-016808-gy8d8285 81 2 8-nt 8-nt CD cord-016808-gy8d8285 81 3 deletion deletion NN cord-016808-gy8d8285 81 4 in in IN cord-016808-gy8d8285 81 5 the the DT cord-016808-gy8d8285 81 6 5NCR 5ncr CD cord-016808-gy8d8285 81 7 of of IN cord-016808-gy8d8285 81 8 poliovirus poliovirus NN cord-016808-gy8d8285 81 9 RNA RNA NNP cord-016808-gy8d8285 81 10 severely severely RB cord-016808-gy8d8285 81 11 impaired impair VBD cord-016808-gy8d8285 81 12 viral viral JJ cord-016808-gy8d8285 81 13 fitness fitness NN cord-016808-gy8d8285 81 14 and and CC cord-016808-gy8d8285 81 15 nearly nearly RB cord-016808-gy8d8285 81 16 killed kill VBD cord-016808-gy8d8285 81 17 the the DT cord-016808-gy8d8285 81 18 virus virus NN cord-016808-gy8d8285 81 19 . . . cord-016808-gy8d8285 82 1 However however RB cord-016808-gy8d8285 82 2 , , , cord-016808-gy8d8285 82 3 this this DT cord-016808-gy8d8285 82 4 defect defect NN cord-016808-gy8d8285 82 5 could could MD cord-016808-gy8d8285 82 6 be be VB cord-016808-gy8d8285 82 7 readily readily RB cord-016808-gy8d8285 82 8 fixed fix VBN cord-016808-gy8d8285 82 9 by by IN cord-016808-gy8d8285 82 10 natural natural JJ cord-016808-gy8d8285 82 11 pseudoreversions pseudoreversion NNS cord-016808-gy8d8285 82 12 of of IN cord-016808-gy8d8285 82 13 at at RB cord-016808-gy8d8285 82 14 least least RBS cord-016808-gy8d8285 82 15 three three CD cord-016808-gy8d8285 82 16 different different JJ cord-016808-gy8d8285 82 17 kinds kind NNS cord-016808-gy8d8285 82 18 , , , cord-016808-gy8d8285 82 19 including include VBG cord-016808-gy8d8285 82 20 point point NN cord-016808-gy8d8285 82 21 mutations mutation NNS cord-016808-gy8d8285 82 22 , , , cord-016808-gy8d8285 82 23 insertions insertion NNS cord-016808-gy8d8285 82 24 and and CC cord-016808-gy8d8285 82 25 extended extended JJ cord-016808-gy8d8285 82 26 deletions deletion NNS cord-016808-gy8d8285 82 27 ( ( -LRB- cord-016808-gy8d8285 82 28 Pilipenko Pilipenko NNP cord-016808-gy8d8285 82 29 et et NNP cord-016808-gy8d8285 82 30 al al NNP cord-016808-gy8d8285 82 31 . . NNP cord-016808-gy8d8285 82 32 , , , cord-016808-gy8d8285 82 33 1992 1992 CD cord-016808-gy8d8285 82 34 ; ; . cord-016808-gy8d8285 83 1 Gmyl Gmyl NNP cord-016808-gy8d8285 83 2 et et FW cord-016808-gy8d8285 83 3 al al NNP cord-016808-gy8d8285 83 4 . . NNP cord-016808-gy8d8285 83 5 , , , cord-016808-gy8d8285 83 6 1993 1993 CD cord-016808-gy8d8285 83 7 ) ) -RRB- cord-016808-gy8d8285 83 8 . . . cord-016808-gy8d8285 84 1 The the DT cord-016808-gy8d8285 84 2 results result NNS cord-016808-gy8d8285 84 3 of of IN cord-016808-gy8d8285 84 4 these these DT cord-016808-gy8d8285 84 5 and and CC cord-016808-gy8d8285 84 6 other other JJ cord-016808-gy8d8285 84 7 experiments experiment NNS cord-016808-gy8d8285 84 8 show show VBP cord-016808-gy8d8285 84 9 that that IN cord-016808-gy8d8285 84 10 many many JJ cord-016808-gy8d8285 84 11 mutations mutation NNS cord-016808-gy8d8285 84 12 and and CC cord-016808-gy8d8285 84 13 their -PRON- PRP$ cord-016808-gy8d8285 84 14 combinations combination NNS cord-016808-gy8d8285 84 15 are be VBP cord-016808-gy8d8285 84 16 life life NN cord-016808-gy8d8285 84 17 - - HYPH cord-016808-gy8d8285 84 18 compatible compatible JJ cord-016808-gy8d8285 84 19 and and CC cord-016808-gy8d8285 84 20 may may MD cord-016808-gy8d8285 84 21 not not RB cord-016808-gy8d8285 84 22 decrease decrease VB cord-016808-gy8d8285 84 23 viral viral JJ cord-016808-gy8d8285 84 24 fitness fitness NN cord-016808-gy8d8285 84 25 and and CC cord-016808-gy8d8285 84 26 , , , cord-016808-gy8d8285 84 27 if if IN cord-016808-gy8d8285 84 28 they -PRON- PRP cord-016808-gy8d8285 84 29 have have VBP cord-016808-gy8d8285 84 30 adverse adverse JJ cord-016808-gy8d8285 84 31 effects effect NNS cord-016808-gy8d8285 84 32 , , , cord-016808-gy8d8285 84 33 these these DT cord-016808-gy8d8285 84 34 effects effect NNS cord-016808-gy8d8285 84 35 may may MD cord-016808-gy8d8285 84 36 often often RB cord-016808-gy8d8285 84 37 be be VB cord-016808-gy8d8285 84 38 repaired repair VBN cord-016808-gy8d8285 84 39 or or CC cord-016808-gy8d8285 84 40 compensated compensate VBN cord-016808-gy8d8285 84 41 . . . cord-016808-gy8d8285 85 1 Even even RB cord-016808-gy8d8285 85 2 broken broken JJ cord-016808-gy8d8285 85 3 molecules molecule NNS cord-016808-gy8d8285 85 4 of of IN cord-016808-gy8d8285 85 5 genomic genomic JJ cord-016808-gy8d8285 85 6 RNA RNA NNP cord-016808-gy8d8285 85 7 may may MD cord-016808-gy8d8285 85 8 sometimes sometimes RB cord-016808-gy8d8285 85 9 be be VB cord-016808-gy8d8285 85 10 repaired repair VBN cord-016808-gy8d8285 85 11 by by IN cord-016808-gy8d8285 85 12 recombination recombination NN cord-016808-gy8d8285 85 13 ( ( -LRB- cord-016808-gy8d8285 85 14 Gmyl Gmyl NNP cord-016808-gy8d8285 85 15 et et FW cord-016808-gy8d8285 85 16 al al NNP cord-016808-gy8d8285 85 17 . . NNP cord-016808-gy8d8285 85 18 , , , cord-016808-gy8d8285 85 19 1999 1999 CD cord-016808-gy8d8285 85 20 ( ( -LRB- cord-016808-gy8d8285 85 21 Gmyl Gmyl NNP cord-016808-gy8d8285 85 22 et et FW cord-016808-gy8d8285 85 23 al al NNP cord-016808-gy8d8285 85 24 . . NNP cord-016808-gy8d8285 85 25 , , , cord-016808-gy8d8285 85 26 , , , cord-016808-gy8d8285 85 27 2003 2003 CD cord-016808-gy8d8285 85 28 . . . cord-016808-gy8d8285 86 1 Thus thus RB cord-016808-gy8d8285 86 2 , , , cord-016808-gy8d8285 86 3 viral viral JJ cord-016808-gy8d8285 86 4 RNA RNA NNP cord-016808-gy8d8285 86 5 genomes genome NNS cord-016808-gy8d8285 86 6 are be VBP cord-016808-gy8d8285 86 7 robust robust JJ cord-016808-gy8d8285 86 8 and and CC cord-016808-gy8d8285 86 9 exhibit exhibit VB cord-016808-gy8d8285 86 10 remarkable remarkable JJ cord-016808-gy8d8285 86 11 vitality vitality NN cord-016808-gy8d8285 86 12 and and CC cord-016808-gy8d8285 86 13 phoenix phoenix NNP cord-016808-gy8d8285 86 14 - - HYPH cord-016808-gy8d8285 86 15 like like JJ cord-016808-gy8d8285 86 16 phenotype phenotype NN cord-016808-gy8d8285 86 17 . . . cord-016808-gy8d8285 87 1 What what WP cord-016808-gy8d8285 87 2 does do VBZ cord-016808-gy8d8285 87 3 then then RB cord-016808-gy8d8285 87 4 force force VB cord-016808-gy8d8285 87 5 them -PRON- PRP cord-016808-gy8d8285 87 6 to to TO cord-016808-gy8d8285 87 7 evolve evolve VB cord-016808-gy8d8285 87 8 and and CC cord-016808-gy8d8285 87 9 to to TO cord-016808-gy8d8285 87 10 form form VB cord-016808-gy8d8285 87 11 new new JJ cord-016808-gy8d8285 87 12 species specie NNS cord-016808-gy8d8285 87 13 and and CC cord-016808-gy8d8285 87 14 genera genus NNS cord-016808-gy8d8285 87 15 ? ? . cord-016808-gy8d8285 88 1 A a DT cord-016808-gy8d8285 88 2 hypothesis hypothesis NN cord-016808-gy8d8285 88 3 is be VBZ cord-016808-gy8d8285 88 4 put put VBN cord-016808-gy8d8285 88 5 forward forward RB cord-016808-gy8d8285 88 6 according accord VBG cord-016808-gy8d8285 88 7 to to IN cord-016808-gy8d8285 88 8 which which WDT cord-016808-gy8d8285 88 9 a a DT cord-016808-gy8d8285 88 10 significant significant JJ cord-016808-gy8d8285 88 11 decrease decrease NN cord-016808-gy8d8285 88 12 in in IN cord-016808-gy8d8285 88 13 fitness fitness NN cord-016808-gy8d8285 88 14 ( ( -LRB- cord-016808-gy8d8285 88 15 caused cause VBN cord-016808-gy8d8285 88 16 for for IN cord-016808-gy8d8285 88 17 example example NN cord-016808-gy8d8285 88 18 by by IN cord-016808-gy8d8285 88 19 mutations mutation NNS cord-016808-gy8d8285 88 20 or or CC cord-016808-gy8d8285 88 21 host host NN cord-016808-gy8d8285 88 22 changes change NNS cord-016808-gy8d8285 88 23 ) ) -RRB- cord-016808-gy8d8285 88 24 may may MD cord-016808-gy8d8285 88 25 result result VB cord-016808-gy8d8285 88 26 in in IN cord-016808-gy8d8285 88 27 genome genome NN cord-016808-gy8d8285 88 28 instability instability NN cord-016808-gy8d8285 88 29 , , , cord-016808-gy8d8285 88 30 which which WDT cord-016808-gy8d8285 88 31 in in IN cord-016808-gy8d8285 88 32 turn turn NN cord-016808-gy8d8285 88 33 would would MD cord-016808-gy8d8285 88 34 produce produce VB cord-016808-gy8d8285 88 35 a a DT cord-016808-gy8d8285 88 36 set set NN cord-016808-gy8d8285 88 37 of of IN cord-016808-gy8d8285 88 38 various various JJ cord-016808-gy8d8285 88 39 low low JJ cord-016808-gy8d8285 88 40 - - HYPH cord-016808-gy8d8285 88 41 fit fit JJ cord-016808-gy8d8285 88 42 variants variant NNS cord-016808-gy8d8285 88 43 . . . cord-016808-gy8d8285 89 1 Under under IN cord-016808-gy8d8285 89 2 non non JJ cord-016808-gy8d8285 89 3 - - JJ cord-016808-gy8d8285 89 4 competitive competitive JJ cord-016808-gy8d8285 89 5 conditions condition NNS cord-016808-gy8d8285 89 6 ( ( -LRB- cord-016808-gy8d8285 89 7 e.g. e.g. RB cord-016808-gy8d8285 89 8 , , , cord-016808-gy8d8285 89 9 in in IN cord-016808-gy8d8285 89 10 a a DT cord-016808-gy8d8285 89 11 small small JJ cord-016808-gy8d8285 89 12 - - HYPH cord-016808-gy8d8285 89 13 sized sized JJ cord-016808-gy8d8285 89 14 population population NN cord-016808-gy8d8285 89 15 ) ) -RRB- cord-016808-gy8d8285 89 16 , , , cord-016808-gy8d8285 89 17 such such JJ cord-016808-gy8d8285 89 18 variants variant NNS cord-016808-gy8d8285 89 19 may may MD cord-016808-gy8d8285 89 20 serve serve VB cord-016808-gy8d8285 89 21 as as IN cord-016808-gy8d8285 89 22 avid avid JJ cord-016808-gy8d8285 89 23 acceptors acceptor NNS cord-016808-gy8d8285 89 24 of of IN cord-016808-gy8d8285 89 25 novel novel JJ cord-016808-gy8d8285 89 26 elements element NNS cord-016808-gy8d8285 89 27 acquired acquire VBN cord-016808-gy8d8285 89 28 by by IN cord-016808-gy8d8285 89 29 recombination recombination NN cord-016808-gy8d8285 89 30 or or CC cord-016808-gy8d8285 89 31 by by IN cord-016808-gy8d8285 89 32 some some DT cord-016808-gy8d8285 89 33 other other JJ cord-016808-gy8d8285 89 34 genetic genetic JJ cord-016808-gy8d8285 89 35 modifications modification NNS cord-016808-gy8d8285 89 36 . . . cord-016808-gy8d8285 90 1 Further further JJ cord-016808-gy8d8285 90 2 fine fine JJ cord-016808-gy8d8285 90 3 genetic genetic JJ cord-016808-gy8d8285 90 4 tuning tuning NN cord-016808-gy8d8285 90 5 may may MD cord-016808-gy8d8285 90 6 convert convert VB cord-016808-gy8d8285 90 7 the the DT cord-016808-gy8d8285 90 8 new new JJ cord-016808-gy8d8285 90 9 creature creature NN cord-016808-gy8d8285 90 10 into into IN cord-016808-gy8d8285 90 11 a a DT cord-016808-gy8d8285 90 12 well well RB cord-016808-gy8d8285 90 13 fit fit JJ cord-016808-gy8d8285 90 14 new new JJ cord-016808-gy8d8285 90 15 viral viral JJ cord-016808-gy8d8285 90 16 species specie NNS cord-016808-gy8d8285 90 17 . . . cord-016808-gy8d8285 91 1 Thus thus RB cord-016808-gy8d8285 91 2 , , , cord-016808-gy8d8285 91 3 evolutionary evolutionary JJ cord-016808-gy8d8285 91 4 " " `` cord-016808-gy8d8285 91 5 jumps jump NNS cord-016808-gy8d8285 91 6 " " '' cord-016808-gy8d8285 91 7 may may MD cord-016808-gy8d8285 91 8 not not RB cord-016808-gy8d8285 91 9 necessarily necessarily RB cord-016808-gy8d8285 91 10 be be VB cord-016808-gy8d8285 91 11 due due JJ cord-016808-gy8d8285 91 12 to to IN cord-016808-gy8d8285 91 13 a a DT cord-016808-gy8d8285 91 14 consecutive consecutive JJ cord-016808-gy8d8285 91 15 acquisition acquisition NN cord-016808-gy8d8285 91 16 of of IN cord-016808-gy8d8285 91 17 improving improve VBG cord-016808-gy8d8285 91 18 mutations mutation NNS cord-016808-gy8d8285 92 1 but but CC cord-016808-gy8d8285 92 2 rather rather RB cord-016808-gy8d8285 92 3 they -PRON- PRP cord-016808-gy8d8285 92 4 may may MD cord-016808-gy8d8285 92 5 result result VB cord-016808-gy8d8285 92 6 from from IN cord-016808-gy8d8285 92 7 injury injury NN cord-016808-gy8d8285 92 8 of of IN cord-016808-gy8d8285 92 9 an an DT cord-016808-gy8d8285 92 10 important important JJ cord-016808-gy8d8285 92 11 element element NN cord-016808-gy8d8285 92 12 followed follow VBN cord-016808-gy8d8285 92 13 by by IN cord-016808-gy8d8285 92 14 metastability metastability NN cord-016808-gy8d8285 92 15 of of IN cord-016808-gy8d8285 92 16 the the DT cord-016808-gy8d8285 92 17 viral viral JJ cord-016808-gy8d8285 92 18 genome genome NN cord-016808-gy8d8285 92 19 , , , cord-016808-gy8d8285 92 20 and and CC cord-016808-gy8d8285 92 21 acquisition acquisition NN cord-016808-gy8d8285 92 22 of of IN cord-016808-gy8d8285 92 23 a a DT cord-016808-gy8d8285 92 24 novel novel JJ cord-016808-gy8d8285 92 25 element element NN cord-016808-gy8d8285 92 26 . . . cord-016808-gy8d8285 93 1 Viruses virus NNS cord-016808-gy8d8285 93 2 are be VBP cord-016808-gy8d8285 93 3 not not RB cord-016808-gy8d8285 93 4 only only RB cord-016808-gy8d8285 93 5 major major JJ cord-016808-gy8d8285 93 6 human human NN cord-016808-gy8d8285 93 7 , , , cord-016808-gy8d8285 93 8 animal animal NN cord-016808-gy8d8285 93 9 , , , cord-016808-gy8d8285 93 10 and and CC cord-016808-gy8d8285 93 11 plant plant NN cord-016808-gy8d8285 93 12 pathogens pathogen NNS cord-016808-gy8d8285 93 13 , , , cord-016808-gy8d8285 93 14 sometime sometime RB cord-016808-gy8d8285 93 15 deadly deadly JJ cord-016808-gy8d8285 93 16 , , , cord-016808-gy8d8285 93 17 being be VBG cord-016808-gy8d8285 93 18 the the DT cord-016808-gy8d8285 93 19 causative causative JJ cord-016808-gy8d8285 93 20 agents agent NNS cord-016808-gy8d8285 93 21 of of IN cord-016808-gy8d8285 93 22 small small JJ cord-016808-gy8d8285 93 23 pox pox NN cord-016808-gy8d8285 93 24 , , , cord-016808-gy8d8285 93 25 HIV HIV NNP cord-016808-gy8d8285 93 26 , , , cord-016808-gy8d8285 93 27 influenza influenza NN cord-016808-gy8d8285 93 28 , , , cord-016808-gy8d8285 93 29 foot foot NN cord-016808-gy8d8285 93 30 - - HYPH cord-016808-gy8d8285 93 31 and and CC cord-016808-gy8d8285 93 32 - - HYPH cord-016808-gy8d8285 93 33 mouth mouth NN cord-016808-gy8d8285 93 34 disease disease NN cord-016808-gy8d8285 93 35 and and CC cord-016808-gy8d8285 93 36 many many JJ cord-016808-gy8d8285 93 37 other other JJ cord-016808-gy8d8285 93 38 severe severe JJ cord-016808-gy8d8285 93 39 pathological pathological JJ cord-016808-gy8d8285 93 40 conditions condition NNS cord-016808-gy8d8285 93 41 , , , cord-016808-gy8d8285 93 42 but but CC cord-016808-gy8d8285 93 43 also also RB cord-016808-gy8d8285 93 44 they -PRON- PRP cord-016808-gy8d8285 93 45 are be VBP cord-016808-gy8d8285 93 46 a a DT cord-016808-gy8d8285 93 47 driver driver NN cord-016808-gy8d8285 93 48 of of IN cord-016808-gy8d8285 93 49 global global JJ cord-016808-gy8d8285 93 50 geochemical geochemical JJ cord-016808-gy8d8285 93 51 cycles cycle NNS cord-016808-gy8d8285 93 52 through through IN cord-016808-gy8d8285 93 53 killing kill VBG cord-016808-gy8d8285 93 54 microplankton microplankton NNP cord-016808-gy8d8285 93 55 , , , cord-016808-gy8d8285 93 56 bacteria bacteria NNS cord-016808-gy8d8285 93 57 etc etc FW cord-016808-gy8d8285 93 58 . . . cord-016808-gy8d8285 94 1 Although although IN cord-016808-gy8d8285 94 2 viruses virus NNS cord-016808-gy8d8285 94 3 have have VBP cord-016808-gy8d8285 94 4 no no DT cord-016808-gy8d8285 94 5 special special JJ cord-016808-gy8d8285 94 6 " " `` cord-016808-gy8d8285 94 7 desire desire NN cord-016808-gy8d8285 94 8 " " '' cord-016808-gy8d8285 94 9 to to TO cord-016808-gy8d8285 94 10 hurt hurt VB cord-016808-gy8d8285 94 11 the the DT cord-016808-gy8d8285 94 12 host host NN cord-016808-gy8d8285 94 13 cell cell NN cord-016808-gy8d8285 94 14 , , , cord-016808-gy8d8285 94 15 they -PRON- PRP cord-016808-gy8d8285 94 16 very very RB cord-016808-gy8d8285 94 17 often often RB cord-016808-gy8d8285 94 18 are be VBP cord-016808-gy8d8285 94 19 doing do VBG cord-016808-gy8d8285 94 20 so so RB cord-016808-gy8d8285 94 21 just just RB cord-016808-gy8d8285 94 22 by by IN cord-016808-gy8d8285 94 23 selfishness selfishness NN cord-016808-gy8d8285 94 24 and and CC cord-016808-gy8d8285 94 25 negligence negligence NN cord-016808-gy8d8285 94 26 . . . cord-016808-gy8d8285 95 1 It -PRON- PRP cord-016808-gy8d8285 95 2 is be VBZ cord-016808-gy8d8285 95 3 well well RB cord-016808-gy8d8285 95 4 known know VBN cord-016808-gy8d8285 95 5 that that IN cord-016808-gy8d8285 95 6 specific specific JJ cord-016808-gy8d8285 95 7 viruses virus NNS cord-016808-gy8d8285 95 8 can can MD cord-016808-gy8d8285 95 9 infect infect VB cord-016808-gy8d8285 95 10 only only RB cord-016808-gy8d8285 95 11 specific specific JJ cord-016808-gy8d8285 95 12 organisms organism NNS cord-016808-gy8d8285 95 13 and and CC cord-016808-gy8d8285 95 14 can can MD cord-016808-gy8d8285 95 15 damage damage VB cord-016808-gy8d8285 95 16 in in IN cord-016808-gy8d8285 95 17 these these DT cord-016808-gy8d8285 95 18 organisms organism NNS cord-016808-gy8d8285 95 19 only only RB cord-016808-gy8d8285 95 20 specific specific JJ cord-016808-gy8d8285 95 21 organs organ NNS cord-016808-gy8d8285 95 22 and and CC cord-016808-gy8d8285 95 23 tissues tissue NNS cord-016808-gy8d8285 95 24 . . . cord-016808-gy8d8285 96 1 An an DT cord-016808-gy8d8285 96 2 important important JJ cord-016808-gy8d8285 96 3 factor factor NN cord-016808-gy8d8285 96 4 contributing contribute VBG cord-016808-gy8d8285 96 5 to to IN cord-016808-gy8d8285 96 6 this this DT cord-016808-gy8d8285 96 7 specific specific JJ cord-016808-gy8d8285 96 8 pathogenicity pathogenicity NN cord-016808-gy8d8285 96 9 is be VBZ cord-016808-gy8d8285 96 10 the the DT cord-016808-gy8d8285 96 11 viral viral JJ cord-016808-gy8d8285 96 12 host host NN cord-016808-gy8d8285 96 13 range range NN cord-016808-gy8d8285 96 14 , , , cord-016808-gy8d8285 96 15 i.e. i.e. FW cord-016808-gy8d8285 96 16 , , , cord-016808-gy8d8285 96 17 the the DT cord-016808-gy8d8285 96 18 ability ability NN cord-016808-gy8d8285 96 19 or or CC cord-016808-gy8d8285 96 20 inability inability NN cord-016808-gy8d8285 96 21 to to TO cord-016808-gy8d8285 96 22 infect infect VB cord-016808-gy8d8285 96 23 a a DT cord-016808-gy8d8285 96 24 given give VBN cord-016808-gy8d8285 96 25 type type NN cord-016808-gy8d8285 96 26 of of IN cord-016808-gy8d8285 96 27 cells cell NNS cord-016808-gy8d8285 96 28 . . . cord-016808-gy8d8285 97 1 Main main JJ cord-016808-gy8d8285 97 2 factors factor NNS cord-016808-gy8d8285 97 3 controlling control VBG cord-016808-gy8d8285 97 4 the the DT cord-016808-gy8d8285 97 5 host host NN cord-016808-gy8d8285 97 6 range range NN cord-016808-gy8d8285 97 7 are be VBP cord-016808-gy8d8285 97 8 availability availability NN cord-016808-gy8d8285 97 9 of of IN cord-016808-gy8d8285 97 10 appropriate appropriate JJ cord-016808-gy8d8285 97 11 receptors receptor NNS cord-016808-gy8d8285 97 12 on on IN cord-016808-gy8d8285 97 13 the the DT cord-016808-gy8d8285 97 14 cell cell NN cord-016808-gy8d8285 97 15 surface surface NN cord-016808-gy8d8285 97 16 , , , cord-016808-gy8d8285 97 17 appropriate appropriate JJ cord-016808-gy8d8285 97 18 intracellular intracellular JJ cord-016808-gy8d8285 97 19 milieu milieu NN cord-016808-gy8d8285 97 20 , , , cord-016808-gy8d8285 97 21 and and CC cord-016808-gy8d8285 97 22 status status NN cord-016808-gy8d8285 97 23 of of IN cord-016808-gy8d8285 97 24 the the DT cord-016808-gy8d8285 97 25 innate innate JJ cord-016808-gy8d8285 97 26 immunity immunity NN cord-016808-gy8d8285 97 27 . . . cord-016808-gy8d8285 98 1 Virus virus NN cord-016808-gy8d8285 98 2 - - HYPH cord-016808-gy8d8285 98 3 induced induce VBN cord-016808-gy8d8285 98 4 damage damage NN cord-016808-gy8d8285 98 5 to to IN cord-016808-gy8d8285 98 6 cells cell NNS cord-016808-gy8d8285 98 7 may may MD cord-016808-gy8d8285 98 8 be be VB cord-016808-gy8d8285 98 9 caused cause VBN cord-016808-gy8d8285 98 10 by by IN cord-016808-gy8d8285 98 11 many many JJ cord-016808-gy8d8285 98 12 factors factor NNS cord-016808-gy8d8285 98 13 and and CC cord-016808-gy8d8285 98 14 among among IN cord-016808-gy8d8285 98 15 them -PRON- PRP cord-016808-gy8d8285 98 16 by by IN cord-016808-gy8d8285 98 17 competition competition NN cord-016808-gy8d8285 98 18 for for IN cord-016808-gy8d8285 98 19 resources resource NNS cord-016808-gy8d8285 98 20 and and CC cord-016808-gy8d8285 98 21 for for IN cord-016808-gy8d8285 98 22 cellular cellular JJ cord-016808-gy8d8285 98 23 infrastructure infrastructure NN cord-016808-gy8d8285 98 24 . . . cord-016808-gy8d8285 99 1 The the DT cord-016808-gy8d8285 99 2 outcome outcome NN cord-016808-gy8d8285 99 3 of of IN cord-016808-gy8d8285 99 4 infection infection NN cord-016808-gy8d8285 99 5 also also RB cord-016808-gy8d8285 99 6 depends depend VBZ cord-016808-gy8d8285 99 7 on on IN cord-016808-gy8d8285 99 8 the the DT cord-016808-gy8d8285 99 9 availability availability NN cord-016808-gy8d8285 99 10 of of IN cord-016808-gy8d8285 99 11 viral viral JJ cord-016808-gy8d8285 99 12 anti anti JJ cord-016808-gy8d8285 99 13 - - JJ cord-016808-gy8d8285 99 14 defensive defensive JJ cord-016808-gy8d8285 99 15 mechanisms mechanism NNS cord-016808-gy8d8285 99 16 . . . cord-016808-gy8d8285 100 1 In in IN cord-016808-gy8d8285 100 2 some some DT cord-016808-gy8d8285 100 3 instances instance NNS cord-016808-gy8d8285 100 4 , , , cord-016808-gy8d8285 100 5 pathology pathology NN cord-016808-gy8d8285 100 6 may may MD cord-016808-gy8d8285 100 7 result result VB cord-016808-gy8d8285 100 8 from from IN cord-016808-gy8d8285 100 9 the the DT cord-016808-gy8d8285 100 10 hyperactive hyperactive JJ cord-016808-gy8d8285 100 11 host host NN cord-016808-gy8d8285 100 12 defense defense NN cord-016808-gy8d8285 100 13 . . . cord-016808-gy8d8285 101 1 Killing kill VBG cord-016808-gy8d8285 101 2 the the DT cord-016808-gy8d8285 101 3 host host NN cord-016808-gy8d8285 101 4 organism organism NN cord-016808-gy8d8285 101 5 does do VBZ cord-016808-gy8d8285 101 6 not not RB cord-016808-gy8d8285 101 7 confer confer VB cord-016808-gy8d8285 101 8 to to IN cord-016808-gy8d8285 101 9 the the DT cord-016808-gy8d8285 101 10 infecting infect VBG cord-016808-gy8d8285 101 11 virus virus NN cord-016808-gy8d8285 101 12 any any DT cord-016808-gy8d8285 101 13 advantage advantage NN cord-016808-gy8d8285 101 14 . . . cord-016808-gy8d8285 102 1 Rather rather RB cord-016808-gy8d8285 102 2 , , , cord-016808-gy8d8285 102 3 co co NN cord-016808-gy8d8285 102 4 - - NN cord-016808-gy8d8285 102 5 evolution evolution NN cord-016808-gy8d8285 102 6 of of IN cord-016808-gy8d8285 102 7 viruses virus NNS cord-016808-gy8d8285 102 8 and and CC cord-016808-gy8d8285 102 9 hosts host NNS cord-016808-gy8d8285 102 10 should should MD cord-016808-gy8d8285 102 11 likely likely RB cord-016808-gy8d8285 102 12 result result VB cord-016808-gy8d8285 102 13 in in IN cord-016808-gy8d8285 102 14 a a DT cord-016808-gy8d8285 102 15 kind kind NN cord-016808-gy8d8285 102 16 of of IN cord-016808-gy8d8285 102 17 equilibrium equilibrium NN cord-016808-gy8d8285 102 18 . . . cord-016808-gy8d8285 103 1 This this DT cord-016808-gy8d8285 103 2 principle principle NN cord-016808-gy8d8285 103 3 may may MD cord-016808-gy8d8285 103 4 be be VB cord-016808-gy8d8285 103 5 illustrated illustrate VBN cord-016808-gy8d8285 103 6 by by IN cord-016808-gy8d8285 103 7 co co NN cord-016808-gy8d8285 103 8 - - NN cord-016808-gy8d8285 103 9 evolution evolution NN cord-016808-gy8d8285 103 10 of of IN cord-016808-gy8d8285 103 11 a a DT cord-016808-gy8d8285 103 12 rabbit rabbit NN cord-016808-gy8d8285 103 13 - - HYPH cord-016808-gy8d8285 103 14 pathogenic pathogenic JJ cord-016808-gy8d8285 103 15 virus virus NN cord-016808-gy8d8285 103 16 and and CC cord-016808-gy8d8285 103 17 wild wild JJ cord-016808-gy8d8285 103 18 rabbits rabbit NNS cord-016808-gy8d8285 103 19 in in IN cord-016808-gy8d8285 103 20 Australia Australia NNP cord-016808-gy8d8285 103 21 in in IN cord-016808-gy8d8285 103 22 the the DT cord-016808-gy8d8285 103 23 mid mid NN cord-016808-gy8d8285 103 24 of of IN cord-016808-gy8d8285 103 25 the the DT cord-016808-gy8d8285 103 26 last last JJ cord-016808-gy8d8285 103 27 century century NN cord-016808-gy8d8285 103 28 ( ( -LRB- cord-016808-gy8d8285 103 29 Fenner Fenner NNP cord-016808-gy8d8285 103 30 and and CC cord-016808-gy8d8285 103 31 Ratcliffe Ratcliffe NNP cord-016808-gy8d8285 103 32 , , , cord-016808-gy8d8285 103 33 1965 1965 CD cord-016808-gy8d8285 103 34 ) ) -RRB- cord-016808-gy8d8285 103 35 . . . cord-016808-gy8d8285 104 1 To to TO cord-016808-gy8d8285 104 2 control control VB cord-016808-gy8d8285 104 3 the the DT cord-016808-gy8d8285 104 4 enormous enormous JJ cord-016808-gy8d8285 104 5 population population NN cord-016808-gy8d8285 104 6 of of IN cord-016808-gy8d8285 104 7 imported import VBN cord-016808-gy8d8285 104 8 European european JJ cord-016808-gy8d8285 104 9 rabbits rabbit NNS cord-016808-gy8d8285 104 10 , , , cord-016808-gy8d8285 104 11 which which WDT cord-016808-gy8d8285 104 12 became become VBD cord-016808-gy8d8285 104 13 major major JJ cord-016808-gy8d8285 104 14 pests pest NNS cord-016808-gy8d8285 104 15 for for IN cord-016808-gy8d8285 104 16 agricultural agricultural JJ cord-016808-gy8d8285 104 17 industry industry NN cord-016808-gy8d8285 104 18 , , , cord-016808-gy8d8285 104 19 it -PRON- PRP cord-016808-gy8d8285 104 20 was be VBD cord-016808-gy8d8285 104 21 decided decide VBN cord-016808-gy8d8285 104 22 to to TO cord-016808-gy8d8285 104 23 use use VB cord-016808-gy8d8285 104 24 the the DT cord-016808-gy8d8285 104 25 fibroma/ fibroma/ NNP cord-016808-gy8d8285 104 26 myxoma myxoma NNP cord-016808-gy8d8285 104 27 virus virus NN cord-016808-gy8d8285 104 28 . . . cord-016808-gy8d8285 105 1 This this DT cord-016808-gy8d8285 105 2 virus virus NN cord-016808-gy8d8285 105 3 induces induce VBZ cord-016808-gy8d8285 105 4 benign benign JJ cord-016808-gy8d8285 105 5 tumors tumor NNS cord-016808-gy8d8285 105 6 in in IN cord-016808-gy8d8285 105 7 American american JJ cord-016808-gy8d8285 105 8 rabbits rabbit NNS cord-016808-gy8d8285 105 9 but but CC cord-016808-gy8d8285 105 10 causes cause NNS cord-016808-gy8d8285 105 11 severe severe JJ cord-016808-gy8d8285 105 12 generalized generalized JJ cord-016808-gy8d8285 105 13 lethal lethal JJ cord-016808-gy8d8285 105 14 lesions lesion NNS cord-016808-gy8d8285 105 15 in in IN cord-016808-gy8d8285 105 16 European european JJ cord-016808-gy8d8285 105 17 ones one NNS cord-016808-gy8d8285 105 18 . . . cord-016808-gy8d8285 106 1 As as IN cord-016808-gy8d8285 106 2 expected expect VBN cord-016808-gy8d8285 106 3 , , , cord-016808-gy8d8285 106 4 virus virus NN cord-016808-gy8d8285 106 5 introduction introduction NN cord-016808-gy8d8285 106 6 resulted result VBD cord-016808-gy8d8285 106 7 in in IN cord-016808-gy8d8285 106 8 mosquito mosquito NN cord-016808-gy8d8285 106 9 - - HYPH cord-016808-gy8d8285 106 10 borne bear VBN cord-016808-gy8d8285 106 11 ( ( -LRB- cord-016808-gy8d8285 106 12 summer summer NN cord-016808-gy8d8285 106 13 ) ) -RRB- cord-016808-gy8d8285 106 14 epizootics epizootic NNS cord-016808-gy8d8285 106 15 , , , cord-016808-gy8d8285 106 16 with with IN cord-016808-gy8d8285 106 17 > > $ cord-016808-gy8d8285 106 18 99 99 CD cord-016808-gy8d8285 106 19 % % NN cord-016808-gy8d8285 106 20 of of IN cord-016808-gy8d8285 106 21 the the DT cord-016808-gy8d8285 106 22 infected infected JJ cord-016808-gy8d8285 106 23 rabbits rabbit NNS cord-016808-gy8d8285 106 24 dying die VBG cord-016808-gy8d8285 106 25 in in IN cord-016808-gy8d8285 106 26 less less JJR cord-016808-gy8d8285 106 27 than than IN cord-016808-gy8d8285 106 28 2 2 CD cord-016808-gy8d8285 106 29 weeks week NNS cord-016808-gy8d8285 106 30 . . . cord-016808-gy8d8285 107 1 Naturally naturally RB cord-016808-gy8d8285 107 2 occurring occur VBG cord-016808-gy8d8285 107 3 less less RBR cord-016808-gy8d8285 107 4 virulent virulent JJ cord-016808-gy8d8285 107 5 virus virus NN cord-016808-gy8d8285 107 6 variants variant NNS cord-016808-gy8d8285 107 7 had have VBD cord-016808-gy8d8285 107 8 more more JJR cord-016808-gy8d8285 107 9 chances chance NNS cord-016808-gy8d8285 107 10 for for IN cord-016808-gy8d8285 107 11 overwintering overwinter VBG cord-016808-gy8d8285 107 12 , , , cord-016808-gy8d8285 107 13 the the DT cord-016808-gy8d8285 107 14 circumstance circumstance NN cord-016808-gy8d8285 107 15 resulting result VBG cord-016808-gy8d8285 107 16 in in IN cord-016808-gy8d8285 107 17 selection selection NN cord-016808-gy8d8285 107 18 of of IN cord-016808-gy8d8285 107 19 attenuated attenuated JJ cord-016808-gy8d8285 107 20 viruses virus NNS cord-016808-gy8d8285 107 21 . . . cord-016808-gy8d8285 108 1 After after IN cord-016808-gy8d8285 108 2 a a DT cord-016808-gy8d8285 108 3 decade decade NN cord-016808-gy8d8285 108 4 , , , cord-016808-gy8d8285 108 5 the the DT cord-016808-gy8d8285 108 6 mortality mortality NN cord-016808-gy8d8285 108 7 of of IN cord-016808-gy8d8285 108 8 European european JJ cord-016808-gy8d8285 108 9 rabbits rabbit NNS cord-016808-gy8d8285 108 10 in in IN cord-016808-gy8d8285 108 11 Australia Australia NNP cord-016808-gy8d8285 108 12 caused cause VBN cord-016808-gy8d8285 108 13 by by IN cord-016808-gy8d8285 108 14 the the DT cord-016808-gy8d8285 108 15 evolved evolve VBN cord-016808-gy8d8285 108 16 virus virus NN cord-016808-gy8d8285 108 17 decreased decrease VBD cord-016808-gy8d8285 108 18 roughly roughly RB cord-016808-gy8d8285 108 19 two two CD cord-016808-gy8d8285 108 20 - - HYPH cord-016808-gy8d8285 108 21 fold fold NN cord-016808-gy8d8285 108 22 . . . cord-016808-gy8d8285 109 1 Simultaneously simultaneously RB cord-016808-gy8d8285 109 2 , , , cord-016808-gy8d8285 109 3 selection selection NN cord-016808-gy8d8285 109 4 of of IN cord-016808-gy8d8285 109 5 resistant resistant JJ cord-016808-gy8d8285 109 6 rabbits rabbit NNS cord-016808-gy8d8285 109 7 took take VBD cord-016808-gy8d8285 109 8 place place NN cord-016808-gy8d8285 109 9 : : : cord-016808-gy8d8285 109 10 mortality mortality NN cord-016808-gy8d8285 109 11 of of IN cord-016808-gy8d8285 109 12 such such JJ cord-016808-gy8d8285 109 13 rabbits rabbit NNS cord-016808-gy8d8285 109 14 infected infect VBN cord-016808-gy8d8285 109 15 with with IN cord-016808-gy8d8285 109 16 the the DT cord-016808-gy8d8285 109 17 original original JJ cord-016808-gy8d8285 109 18 virus virus NN cord-016808-gy8d8285 109 19 decreased decrease VBD cord-016808-gy8d8285 109 20 roughly roughly RB cord-016808-gy8d8285 109 21 fourfold fourfold JJ cord-016808-gy8d8285 109 22 . . . cord-016808-gy8d8285 110 1 On on IN cord-016808-gy8d8285 110 2 the the DT cord-016808-gy8d8285 110 3 other other JJ cord-016808-gy8d8285 110 4 hand hand NN cord-016808-gy8d8285 110 5 , , , cord-016808-gy8d8285 110 6 newly newly RB cord-016808-gy8d8285 110 7 emerging emerge VBG cord-016808-gy8d8285 110 8 viral viral JJ cord-016808-gy8d8285 110 9 infections infection NNS cord-016808-gy8d8285 110 10 , , , cord-016808-gy8d8285 110 11 caused cause VBN cord-016808-gy8d8285 110 12 often often RB cord-016808-gy8d8285 110 13 by by IN cord-016808-gy8d8285 110 14 viruses virus NNS cord-016808-gy8d8285 110 15 , , , cord-016808-gy8d8285 110 16 which which WDT cord-016808-gy8d8285 110 17 have have VBP cord-016808-gy8d8285 110 18 been be VBN cord-016808-gy8d8285 110 19 transferred transfer VBN cord-016808-gy8d8285 110 20 to to IN cord-016808-gy8d8285 110 21 human human JJ cord-016808-gy8d8285 110 22 populations population NNS cord-016808-gy8d8285 110 23 from from IN cord-016808-gy8d8285 110 24 an an DT cord-016808-gy8d8285 110 25 animal animal NN cord-016808-gy8d8285 110 26 reservoir reservoir NN cord-016808-gy8d8285 110 27 , , , cord-016808-gy8d8285 110 28 may may MD cord-016808-gy8d8285 110 29 exhibit exhibit VB cord-016808-gy8d8285 110 30 a a DT cord-016808-gy8d8285 110 31 very very RB cord-016808-gy8d8285 110 32 high high JJ cord-016808-gy8d8285 110 33 pathogenicity pathogenicity NN cord-016808-gy8d8285 110 34 for for IN cord-016808-gy8d8285 110 35 humans human NNS cord-016808-gy8d8285 110 36 . . . cord-016808-gy8d8285 111 1 A a DT cord-016808-gy8d8285 111 2 remarkable remarkable JJ cord-016808-gy8d8285 111 3 example example NN cord-016808-gy8d8285 111 4 of of IN cord-016808-gy8d8285 111 5 this this DT cord-016808-gy8d8285 111 6 is be VBZ cord-016808-gy8d8285 111 7 the the DT cord-016808-gy8d8285 111 8 1918 1918 CD cord-016808-gy8d8285 111 9 Spanish spanish JJ cord-016808-gy8d8285 111 10 flu flu NN cord-016808-gy8d8285 111 11 , , , cord-016808-gy8d8285 111 12 which which WDT cord-016808-gy8d8285 111 13 killed kill VBD cord-016808-gy8d8285 111 14 about about RB cord-016808-gy8d8285 111 15 30 30 CD cord-016808-gy8d8285 111 16 - - SYM cord-016808-gy8d8285 111 17 50 50 CD cord-016808-gy8d8285 111 18 million million CD cord-016808-gy8d8285 111 19 people people NNS cord-016808-gy8d8285 111 20 , , , cord-016808-gy8d8285 111 21 or or CC cord-016808-gy8d8285 111 22 ∼2 ∼2 CD cord-016808-gy8d8285 111 23 % % NN cord-016808-gy8d8285 111 24 of of IN cord-016808-gy8d8285 111 25 those those DT cord-016808-gy8d8285 111 26 infected infect VBN cord-016808-gy8d8285 111 27 . . . cord-016808-gy8d8285 112 1 In in IN cord-016808-gy8d8285 112 2 fact fact NN cord-016808-gy8d8285 112 3 , , , cord-016808-gy8d8285 112 4 influenza influenza NN cord-016808-gy8d8285 112 5 virus virus NN cord-016808-gy8d8285 112 6 is be VBZ cord-016808-gy8d8285 112 7 in in IN cord-016808-gy8d8285 112 8 most most JJS cord-016808-gy8d8285 112 9 cases case NNS cord-016808-gy8d8285 112 10 a a DT cord-016808-gy8d8285 112 11 nonpathogenic nonpathogenic JJ cord-016808-gy8d8285 112 12 or or CC cord-016808-gy8d8285 112 13 slightly slightly RB cord-016808-gy8d8285 112 14 pathogenic pathogenic JJ cord-016808-gy8d8285 112 15 avian avian JJ cord-016808-gy8d8285 112 16 enteric enteric JJ cord-016808-gy8d8285 112 17 virus virus NN cord-016808-gy8d8285 112 18 . . . cord-016808-gy8d8285 113 1 To to TO cord-016808-gy8d8285 113 2 infect infect VB cord-016808-gy8d8285 113 3 a a DT cord-016808-gy8d8285 113 4 human human NN cord-016808-gy8d8285 113 5 , , , cord-016808-gy8d8285 113 6 an an DT cord-016808-gy8d8285 113 7 avian avian JJ cord-016808-gy8d8285 113 8 flu flu NN cord-016808-gy8d8285 113 9 virus virus NN cord-016808-gy8d8285 113 10 should should MD cord-016808-gy8d8285 113 11 change change VB cord-016808-gy8d8285 113 12 its -PRON- PRP$ cord-016808-gy8d8285 113 13 receptor receptor NN cord-016808-gy8d8285 113 14 specificity specificity NN cord-016808-gy8d8285 113 15 , , , cord-016808-gy8d8285 113 16 which which WDT cord-016808-gy8d8285 113 17 depends depend VBZ cord-016808-gy8d8285 113 18 on on IN cord-016808-gy8d8285 113 19 the the DT cord-016808-gy8d8285 113 20 interaction interaction NN cord-016808-gy8d8285 113 21 of of IN cord-016808-gy8d8285 113 22 viral viral JJ cord-016808-gy8d8285 113 23 hemagglutinin hemagglutinin NN cord-016808-gy8d8285 113 24 ( ( -LRB- cord-016808-gy8d8285 113 25 HA HA NNP cord-016808-gy8d8285 113 26 ) ) -RRB- cord-016808-gy8d8285 113 27 with with IN cord-016808-gy8d8285 113 28 a a DT cord-016808-gy8d8285 113 29 cellular cellular JJ cord-016808-gy8d8285 113 30 membrane membrane NN cord-016808-gy8d8285 113 31 glycoprotein glycoprotein NN cord-016808-gy8d8285 113 32 receptor receptor NN cord-016808-gy8d8285 113 33 . . . cord-016808-gy8d8285 114 1 Generally generally RB cord-016808-gy8d8285 114 2 , , , cord-016808-gy8d8285 114 3 it -PRON- PRP cord-016808-gy8d8285 114 4 is be VBZ cord-016808-gy8d8285 114 5 sufficient sufficient JJ cord-016808-gy8d8285 114 6 to to TO cord-016808-gy8d8285 114 7 change change VB cord-016808-gy8d8285 114 8 only only RB cord-016808-gy8d8285 114 9 two two CD cord-016808-gy8d8285 114 10 amino amino NN cord-016808-gy8d8285 114 11 acid acid NN cord-016808-gy8d8285 114 12 residues residue NNS cord-016808-gy8d8285 114 13 in in IN cord-016808-gy8d8285 114 14 the the DT cord-016808-gy8d8285 114 15 avian avian JJ cord-016808-gy8d8285 114 16 HA HA NNP cord-016808-gy8d8285 114 17 to to TO cord-016808-gy8d8285 114 18 allow allow VB cord-016808-gy8d8285 114 19 it -PRON- PRP cord-016808-gy8d8285 114 20 to to TO cord-016808-gy8d8285 114 21 efficiently efficiently RB cord-016808-gy8d8285 114 22 recognize recognize VB cord-016808-gy8d8285 114 23 the the DT cord-016808-gy8d8285 114 24 human human JJ cord-016808-gy8d8285 114 25 receptor receptor NN cord-016808-gy8d8285 114 26 . . . cord-016808-gy8d8285 115 1 Such such JJ cord-016808-gy8d8285 115 2 a a DT cord-016808-gy8d8285 115 3 change change NN cord-016808-gy8d8285 115 4 in in IN cord-016808-gy8d8285 115 5 the the DT cord-016808-gy8d8285 115 6 host host NN cord-016808-gy8d8285 115 7 range range NN cord-016808-gy8d8285 115 8 may may MD cord-016808-gy8d8285 115 9 be be VB cord-016808-gy8d8285 115 10 achieved achieve VBN cord-016808-gy8d8285 115 11 by by IN cord-016808-gy8d8285 115 12 either either DT cord-016808-gy8d8285 115 13 mutations mutation NNS cord-016808-gy8d8285 115 14 in in IN cord-016808-gy8d8285 115 15 the the DT cord-016808-gy8d8285 115 16 avian avian JJ cord-016808-gy8d8285 115 17 HA HA NNP cord-016808-gy8d8285 115 18 or or CC cord-016808-gy8d8285 115 19 acquisition acquisition NN cord-016808-gy8d8285 115 20 by by IN cord-016808-gy8d8285 115 21 an an DT cord-016808-gy8d8285 115 22 avian avian JJ cord-016808-gy8d8285 115 23 virus virus NN cord-016808-gy8d8285 115 24 of of IN cord-016808-gy8d8285 115 25 the the DT cord-016808-gy8d8285 115 26 HA HA NNP cord-016808-gy8d8285 115 27 gene gene NN cord-016808-gy8d8285 115 28 from from IN cord-016808-gy8d8285 115 29 human human JJ cord-016808-gy8d8285 115 30 influenza influenza NN cord-016808-gy8d8285 115 31 virus virus NN cord-016808-gy8d8285 115 32 as as IN cord-016808-gy8d8285 115 33 a a DT cord-016808-gy8d8285 115 34 result result NN cord-016808-gy8d8285 115 35 of of IN cord-016808-gy8d8285 115 36 genetic genetic JJ cord-016808-gy8d8285 115 37 exchange exchange NN cord-016808-gy8d8285 115 38 ( ( -LRB- cord-016808-gy8d8285 115 39 reassortment reassortment NN cord-016808-gy8d8285 115 40 ) ) -RRB- cord-016808-gy8d8285 115 41 between between IN cord-016808-gy8d8285 115 42 these these DT cord-016808-gy8d8285 115 43 viruses virus NNS cord-016808-gy8d8285 115 44 during during IN cord-016808-gy8d8285 115 45 mixed mixed JJ cord-016808-gy8d8285 115 46 infections infection NNS cord-016808-gy8d8285 115 47 . . . cord-016808-gy8d8285 116 1 Adaptation adaptation NN cord-016808-gy8d8285 116 2 of of IN cord-016808-gy8d8285 116 3 flu flu NN cord-016808-gy8d8285 116 4 viruses virus NNS cord-016808-gy8d8285 116 5 to to IN cord-016808-gy8d8285 116 6 humans human NNS cord-016808-gy8d8285 116 7 may may MD cord-016808-gy8d8285 116 8 also also RB cord-016808-gy8d8285 116 9 require require VB cord-016808-gy8d8285 116 10 mutations mutation NNS cord-016808-gy8d8285 116 11 in in IN cord-016808-gy8d8285 116 12 other other JJ cord-016808-gy8d8285 116 13 viral viral JJ cord-016808-gy8d8285 116 14 genes gene NNS cord-016808-gy8d8285 116 15 . . . cord-016808-gy8d8285 117 1 The the DT cord-016808-gy8d8285 117 2 severity severity NN cord-016808-gy8d8285 117 3 of of IN cord-016808-gy8d8285 117 4 the the DT cord-016808-gy8d8285 117 5 infection infection NN cord-016808-gy8d8285 117 6 depends depend VBZ cord-016808-gy8d8285 117 7 not not RB cord-016808-gy8d8285 117 8 only only RB cord-016808-gy8d8285 117 9 on on IN cord-016808-gy8d8285 117 10 the the DT cord-016808-gy8d8285 117 11 efficiency efficiency NN cord-016808-gy8d8285 117 12 of of IN cord-016808-gy8d8285 117 13 viral viral JJ cord-016808-gy8d8285 117 14 reproduction reproduction NN cord-016808-gy8d8285 117 15 in in IN cord-016808-gy8d8285 117 16 the the DT cord-016808-gy8d8285 117 17 new new JJ cord-016808-gy8d8285 117 18 host host NN cord-016808-gy8d8285 117 19 but but CC cord-016808-gy8d8285 117 20 also also RB cord-016808-gy8d8285 117 21 on on IN cord-016808-gy8d8285 117 22 the the DT cord-016808-gy8d8285 117 23 balance balance NN cord-016808-gy8d8285 117 24 and and CC cord-016808-gy8d8285 117 25 interplay interplay NN cord-016808-gy8d8285 117 26 between between IN cord-016808-gy8d8285 117 27 host host NN cord-016808-gy8d8285 117 28 defense defense NN cord-016808-gy8d8285 117 29 and and CC cord-016808-gy8d8285 117 30 viral viral JJ cord-016808-gy8d8285 117 31 counter counter JJ cord-016808-gy8d8285 117 32 - - NN cord-016808-gy8d8285 117 33 defense defense NN cord-016808-gy8d8285 117 34 mechanisms mechanism NNS cord-016808-gy8d8285 117 35 . . . cord-016808-gy8d8285 118 1 Influenza influenza NN cord-016808-gy8d8285 118 2 virus virus NN cord-016808-gy8d8285 118 3 populations population NNS cord-016808-gy8d8285 118 4 are be VBP cord-016808-gy8d8285 118 5 constantly constantly RB cord-016808-gy8d8285 118 6 changing change VBG cord-016808-gy8d8285 118 7 . . . cord-016808-gy8d8285 119 1 While while IN cord-016808-gy8d8285 119 2 undergoing undergo VBG cord-016808-gy8d8285 119 3 immune immune JJ cord-016808-gy8d8285 119 4 pressure pressure NN cord-016808-gy8d8285 119 5 , , , cord-016808-gy8d8285 119 6 they -PRON- PRP cord-016808-gy8d8285 119 7 accumulate accumulate VBP cord-016808-gy8d8285 119 8 mutations mutation NNS cord-016808-gy8d8285 119 9 , , , cord-016808-gy8d8285 119 10 primarily primarily RB cord-016808-gy8d8285 119 11 in in IN cord-016808-gy8d8285 119 12 HA HA NNP cord-016808-gy8d8285 119 13 and and CC cord-016808-gy8d8285 119 14 neuraminidase neuraminidase NN cord-016808-gy8d8285 119 15 ( ( -LRB- cord-016808-gy8d8285 119 16 NA NA NNP cord-016808-gy8d8285 119 17 ) ) -RRB- cord-016808-gy8d8285 119 18 ( ( -LRB- cord-016808-gy8d8285 119 19 " " `` cord-016808-gy8d8285 119 20 antigenic antigenic JJ cord-016808-gy8d8285 119 21 drift drift NN cord-016808-gy8d8285 119 22 " " '' cord-016808-gy8d8285 119 23 ) ) -RRB- cord-016808-gy8d8285 119 24 . . . cord-016808-gy8d8285 120 1 Qualitatively qualitatively RB cord-016808-gy8d8285 120 2 new new JJ cord-016808-gy8d8285 120 3 variants variant NNS cord-016808-gy8d8285 120 4 are be VBP cord-016808-gy8d8285 120 5 emerging emerge VBG cord-016808-gy8d8285 120 6 from from IN cord-016808-gy8d8285 120 7 time time NN cord-016808-gy8d8285 120 8 to to IN cord-016808-gy8d8285 120 9 time time NN cord-016808-gy8d8285 120 10 , , , cord-016808-gy8d8285 120 11 primarily primarily RB cord-016808-gy8d8285 120 12 through through IN cord-016808-gy8d8285 120 13 reassortment reassortment NN cord-016808-gy8d8285 120 14 ( ( -LRB- cord-016808-gy8d8285 120 15 " " `` cord-016808-gy8d8285 120 16 antigenic antigenic JJ cord-016808-gy8d8285 120 17 shift shift NN cord-016808-gy8d8285 120 18 " " '' cord-016808-gy8d8285 120 19 ) ) -RRB- cord-016808-gy8d8285 120 20 . . . cord-016808-gy8d8285 121 1 The the DT cord-016808-gy8d8285 121 2 Spanish spanish JJ cord-016808-gy8d8285 121 3 ( ( -LRB- cord-016808-gy8d8285 121 4 1918 1918 CD cord-016808-gy8d8285 121 5 ) ) -RRB- cord-016808-gy8d8285 121 6 flu flu NN cord-016808-gy8d8285 121 7 was be VBD cord-016808-gy8d8285 121 8 just just RB cord-016808-gy8d8285 121 9 one one CD cord-016808-gy8d8285 121 10 of of IN cord-016808-gy8d8285 121 11 such such JJ cord-016808-gy8d8285 121 12 " " `` cord-016808-gy8d8285 121 13 shifted shift VBN cord-016808-gy8d8285 121 14 " " '' cord-016808-gy8d8285 121 15 variants variant NNS cord-016808-gy8d8285 121 16 , , , cord-016808-gy8d8285 121 17 as as IN cord-016808-gy8d8285 121 18 judged judge VBN cord-016808-gy8d8285 121 19 by by IN cord-016808-gy8d8285 121 20 the the DT cord-016808-gy8d8285 121 21 nucleotide nucleotide JJ cord-016808-gy8d8285 121 22 sequence sequence NN cord-016808-gy8d8285 121 23 of of IN cord-016808-gy8d8285 121 24 its -PRON- PRP$ cord-016808-gy8d8285 121 25 genomic genomic JJ cord-016808-gy8d8285 121 26 RNA RNA NNP cord-016808-gy8d8285 121 27 determined determine VBN cord-016808-gy8d8285 121 28 from from IN cord-016808-gy8d8285 121 29 archival archival JJ cord-016808-gy8d8285 121 30 formalin formalin NN cord-016808-gy8d8285 121 31 - - HYPH cord-016808-gy8d8285 121 32 treated treat VBN cord-016808-gy8d8285 121 33 paraffin paraffin NN cord-016808-gy8d8285 121 34 - - HYPH cord-016808-gy8d8285 121 35 embedded embed VBN cord-016808-gy8d8285 121 36 as as RB cord-016808-gy8d8285 121 37 well well RB cord-016808-gy8d8285 121 38 as as IN cord-016808-gy8d8285 121 39 permafrost permafrost NN cord-016808-gy8d8285 121 40 samples sample NNS cord-016808-gy8d8285 122 1 ( ( -LRB- cord-016808-gy8d8285 122 2 Tumpey Tumpey NNP cord-016808-gy8d8285 122 3 et et NNP cord-016808-gy8d8285 122 4 al al NNP cord-016808-gy8d8285 122 5 . . NNP cord-016808-gy8d8285 122 6 , , , cord-016808-gy8d8285 122 7 2005 2005 CD cord-016808-gy8d8285 122 8 ) ) -RRB- cord-016808-gy8d8285 122 9 . . . cord-016808-gy8d8285 123 1 It -PRON- PRP cord-016808-gy8d8285 123 2 was be VBD cord-016808-gy8d8285 123 3 established establish VBN cord-016808-gy8d8285 123 4 that that IN cord-016808-gy8d8285 123 5 the the DT cord-016808-gy8d8285 123 6 deadly deadly JJ cord-016808-gy8d8285 123 7 virus virus NN cord-016808-gy8d8285 123 8 was be VBD cord-016808-gy8d8285 123 9 indeed indeed RB cord-016808-gy8d8285 123 10 of of IN cord-016808-gy8d8285 123 11 avian avian JJ cord-016808-gy8d8285 123 12 origin origin NN cord-016808-gy8d8285 123 13 and and CC cord-016808-gy8d8285 123 14 that that IN cord-016808-gy8d8285 123 15 the the DT cord-016808-gy8d8285 123 16 " " `` cord-016808-gy8d8285 123 17 jump jump NN cord-016808-gy8d8285 123 18 " " '' cord-016808-gy8d8285 123 19 into into IN cord-016808-gy8d8285 123 20 humans human NNS cord-016808-gy8d8285 123 21 was be VBD cord-016808-gy8d8285 123 22 associated associate VBN cord-016808-gy8d8285 123 23 with with IN cord-016808-gy8d8285 123 24 alterations alteration NNS cord-016808-gy8d8285 123 25 in in IN cord-016808-gy8d8285 123 26 the the DT cord-016808-gy8d8285 123 27 HA HA NNP cord-016808-gy8d8285 123 28 and and CC cord-016808-gy8d8285 123 29 some some DT cord-016808-gy8d8285 123 30 other other JJ cord-016808-gy8d8285 123 31 genes gene NNS cord-016808-gy8d8285 123 32 . . . cord-016808-gy8d8285 124 1 The the DT cord-016808-gy8d8285 124 2 virus virus NN cord-016808-gy8d8285 124 3 was be VBD cord-016808-gy8d8285 124 4 reconstructed reconstruct VBN cord-016808-gy8d8285 124 5 on on IN cord-016808-gy8d8285 124 6 the the DT cord-016808-gy8d8285 124 7 basis basis NN cord-016808-gy8d8285 124 8 of of IN cord-016808-gy8d8285 124 9 known know VBN cord-016808-gy8d8285 124 10 nucleotide nucleotide JJ cord-016808-gy8d8285 124 11 sequence sequence NN cord-016808-gy8d8285 124 12 of of IN cord-016808-gy8d8285 124 13 its -PRON- PRP$ cord-016808-gy8d8285 124 14 genome genome NN cord-016808-gy8d8285 124 15 , , , cord-016808-gy8d8285 124 16 and and CC cord-016808-gy8d8285 124 17 its -PRON- PRP$ cord-016808-gy8d8285 124 18 pathogenic pathogenic JJ cord-016808-gy8d8285 124 19 properties property NNS cord-016808-gy8d8285 124 20 were be VBD cord-016808-gy8d8285 124 21 confirmed confirm VBN cord-016808-gy8d8285 124 22 and and CC cord-016808-gy8d8285 124 23 further further RB cord-016808-gy8d8285 124 24 investigated investigate VBN cord-016808-gy8d8285 124 25 . . . cord-016808-gy8d8285 125 1 The the DT cord-016808-gy8d8285 125 2 causative causative JJ cord-016808-gy8d8285 125 3 agents agent NNS cord-016808-gy8d8285 125 4 of of IN cord-016808-gy8d8285 125 5 the the DT cord-016808-gy8d8285 125 6 two two CD cord-016808-gy8d8285 125 7 next next JJ cord-016808-gy8d8285 125 8 influenza influenza NN cord-016808-gy8d8285 125 9 pandemics pandemic NNS cord-016808-gy8d8285 125 10 , , , cord-016808-gy8d8285 125 11 the the DT cord-016808-gy8d8285 125 12 " " `` cord-016808-gy8d8285 125 13 Asian asian JJ cord-016808-gy8d8285 125 14 " " '' cord-016808-gy8d8285 125 15 ( ( -LRB- cord-016808-gy8d8285 125 16 1957 1957 CD cord-016808-gy8d8285 125 17 ) ) -RRB- cord-016808-gy8d8285 125 18 and and CC cord-016808-gy8d8285 125 19 " " `` cord-016808-gy8d8285 125 20 Hong Hong NNP cord-016808-gy8d8285 125 21 - - HYPH cord-016808-gy8d8285 125 22 Kong Kong NNP cord-016808-gy8d8285 125 23 " " '' cord-016808-gy8d8285 125 24 ( ( -LRB- cord-016808-gy8d8285 125 25 1968 1968 CD cord-016808-gy8d8285 125 26 ) ) -RRB- cord-016808-gy8d8285 125 27 viruses virus NNS cord-016808-gy8d8285 125 28 , , , cord-016808-gy8d8285 125 29 also also RB cord-016808-gy8d8285 125 30 resulted result VBD cord-016808-gy8d8285 125 31 from from IN cord-016808-gy8d8285 125 32 reassortment reassortment NN cord-016808-gy8d8285 125 33 between between IN cord-016808-gy8d8285 125 34 avian avian JJ cord-016808-gy8d8285 125 35 and and CC cord-016808-gy8d8285 125 36 human human JJ cord-016808-gy8d8285 125 37 viruses virus NNS cord-016808-gy8d8285 125 38 . . . cord-016808-gy8d8285 126 1 Currently currently RB cord-016808-gy8d8285 126 2 newly newly RB cord-016808-gy8d8285 126 3 emerging emerge VBG cord-016808-gy8d8285 126 4 , , , cord-016808-gy8d8285 126 5 highly highly RB cord-016808-gy8d8285 126 6 pathogenic pathogenic JJ cord-016808-gy8d8285 126 7 avian avian JJ cord-016808-gy8d8285 126 8 virus virus NN cord-016808-gy8d8285 126 9 ( ( -LRB- cord-016808-gy8d8285 126 10 H5N1 H5N1 NNP cord-016808-gy8d8285 126 11 ) ) -RRB- cord-016808-gy8d8285 126 12 presents present VBZ cord-016808-gy8d8285 126 13 a a DT cord-016808-gy8d8285 126 14 potential potential JJ cord-016808-gy8d8285 126 15 threat threat NN cord-016808-gy8d8285 126 16 of of IN cord-016808-gy8d8285 126 17 a a DT cord-016808-gy8d8285 126 18 new new JJ cord-016808-gy8d8285 126 19 pandemic pandemic NN cord-016808-gy8d8285 126 20 . . . cord-016808-gy8d8285 127 1 Although although IN cord-016808-gy8d8285 127 2 cases case NNS cord-016808-gy8d8285 127 3 of of IN cord-016808-gy8d8285 127 4 human human NN cord-016808-gy8d8285 127 5 - - HYPH cord-016808-gy8d8285 127 6 to to IN cord-016808-gy8d8285 127 7 - - HYPH cord-016808-gy8d8285 127 8 human human JJ cord-016808-gy8d8285 127 9 transmission transmission NN cord-016808-gy8d8285 127 10 of of IN cord-016808-gy8d8285 127 11 this this DT cord-016808-gy8d8285 127 12 virus virus NN cord-016808-gy8d8285 127 13 are be VBP cord-016808-gy8d8285 127 14 so so RB cord-016808-gy8d8285 127 15 far far RB cord-016808-gy8d8285 127 16 extremely extremely RB cord-016808-gy8d8285 127 17 rare rare JJ cord-016808-gy8d8285 127 18 and and CC cord-016808-gy8d8285 127 19 only only RB cord-016808-gy8d8285 127 20 occur occur VBP cord-016808-gy8d8285 127 21 during during IN cord-016808-gy8d8285 127 22 close close JJ cord-016808-gy8d8285 127 23 family family NN cord-016808-gy8d8285 127 24 contacts contact NNS cord-016808-gy8d8285 127 25 , , , cord-016808-gy8d8285 127 26 the the DT cord-016808-gy8d8285 127 27 possibility possibility NN cord-016808-gy8d8285 127 28 of of IN cord-016808-gy8d8285 127 29 acquisition acquisition NN cord-016808-gy8d8285 127 30 of of IN cord-016808-gy8d8285 127 31 ominous ominous JJ cord-016808-gy8d8285 127 32 mutations mutation NNS cord-016808-gy8d8285 127 33 can can MD cord-016808-gy8d8285 127 34 not not RB cord-016808-gy8d8285 127 35 be be VB cord-016808-gy8d8285 127 36 ruled rule VBN cord-016808-gy8d8285 127 37 out out RP cord-016808-gy8d8285 127 38 . . . cord-016808-gy8d8285 128 1 The the DT cord-016808-gy8d8285 128 2 severe severe JJ cord-016808-gy8d8285 128 3 acute acute JJ cord-016808-gy8d8285 128 4 respiratory respiratory JJ cord-016808-gy8d8285 128 5 syndrome syndrome NN cord-016808-gy8d8285 128 6 ( ( -LRB- cord-016808-gy8d8285 128 7 SARS SARS NNP cord-016808-gy8d8285 128 8 ) ) -RRB- cord-016808-gy8d8285 128 9 is be VBZ cord-016808-gy8d8285 128 10 caused cause VBN cord-016808-gy8d8285 128 11 by by IN cord-016808-gy8d8285 128 12 another another DT cord-016808-gy8d8285 128 13 newly newly RB cord-016808-gy8d8285 128 14 emerged emerge VBN cord-016808-gy8d8285 128 15 virus virus NN cord-016808-gy8d8285 128 16 . . . cord-016808-gy8d8285 129 1 It -PRON- PRP cord-016808-gy8d8285 129 2 belongs belong VBZ cord-016808-gy8d8285 129 3 to to IN cord-016808-gy8d8285 129 4 coronaviruses coronaviruse NNS cord-016808-gy8d8285 129 5 . . . cord-016808-gy8d8285 130 1 Representatives representative NNS cord-016808-gy8d8285 130 2 of of IN cord-016808-gy8d8285 130 3 this this DT cord-016808-gy8d8285 130 4 viral viral JJ cord-016808-gy8d8285 130 5 family family NN cord-016808-gy8d8285 130 6 are be VBP cord-016808-gy8d8285 130 7 etiological etiological JJ cord-016808-gy8d8285 130 8 agents agent NNS cord-016808-gy8d8285 130 9 of of IN cord-016808-gy8d8285 130 10 relatively relatively RB cord-016808-gy8d8285 130 11 mild mild JJ cord-016808-gy8d8285 130 12 respiratory respiratory NN cord-016808-gy8d8285 130 13 ( ( -LRB- cord-016808-gy8d8285 130 14 e.g. e.g. RB cord-016808-gy8d8285 130 15 , , , cord-016808-gy8d8285 130 16 common common JJ cord-016808-gy8d8285 130 17 cold cold NN cord-016808-gy8d8285 130 18 ) ) -RRB- cord-016808-gy8d8285 130 19 , , , cord-016808-gy8d8285 130 20 enteric enteric JJ cord-016808-gy8d8285 130 21 , , , cord-016808-gy8d8285 130 22 and and CC cord-016808-gy8d8285 130 23 some some DT cord-016808-gy8d8285 130 24 other other JJ cord-016808-gy8d8285 130 25 diseases disease NNS cord-016808-gy8d8285 130 26 in in IN cord-016808-gy8d8285 130 27 a a DT cord-016808-gy8d8285 130 28 wide wide JJ cord-016808-gy8d8285 130 29 variety variety NN cord-016808-gy8d8285 130 30 of of IN cord-016808-gy8d8285 130 31 animals animal NNS cord-016808-gy8d8285 130 32 and and CC cord-016808-gy8d8285 130 33 humans human NNS cord-016808-gy8d8285 130 34 . . . cord-016808-gy8d8285 131 1 Again again RB cord-016808-gy8d8285 131 2 , , , cord-016808-gy8d8285 131 3 the the DT cord-016808-gy8d8285 131 4 very very RB cord-016808-gy8d8285 131 5 dangerous dangerous JJ cord-016808-gy8d8285 131 6 virus virus NN cord-016808-gy8d8285 131 7 " " '' cord-016808-gy8d8285 131 8 came come VBD cord-016808-gy8d8285 131 9 " " '' cord-016808-gy8d8285 131 10 to to IN cord-016808-gy8d8285 131 11 humans human NNS cord-016808-gy8d8285 131 12 from from IN cord-016808-gy8d8285 131 13 an an DT cord-016808-gy8d8285 131 14 animal animal NN cord-016808-gy8d8285 131 15 ( ( -LRB- cord-016808-gy8d8285 131 16 in in IN cord-016808-gy8d8285 131 17 this this DT cord-016808-gy8d8285 131 18 case case NN cord-016808-gy8d8285 131 19 , , , cord-016808-gy8d8285 131 20 bat bat NN cord-016808-gy8d8285 131 21 ) ) -RRB- cord-016808-gy8d8285 131 22 and and CC cord-016808-gy8d8285 131 23 the the DT cord-016808-gy8d8285 131 24 interspecies interspecie NNS cord-016808-gy8d8285 131 25 transmission transmission NN cord-016808-gy8d8285 131 26 involved involve VBD cord-016808-gy8d8285 131 27 a a DT cord-016808-gy8d8285 131 28 change change NN cord-016808-gy8d8285 131 29 in in IN cord-016808-gy8d8285 131 30 receptor receptor NN cord-016808-gy8d8285 131 31 recognition recognition NN cord-016808-gy8d8285 132 1 ( ( -LRB- cord-016808-gy8d8285 132 2 Lau Lau NNP cord-016808-gy8d8285 132 3 et et NNP cord-016808-gy8d8285 132 4 al al NNP cord-016808-gy8d8285 132 5 . . NNP cord-016808-gy8d8285 132 6 , , , cord-016808-gy8d8285 132 7 2005 2005 CD cord-016808-gy8d8285 132 8 ; ; : cord-016808-gy8d8285 132 9 Li Li NNP cord-016808-gy8d8285 132 10 et et NNP cord-016808-gy8d8285 132 11 al al NNP cord-016808-gy8d8285 132 12 . . NNP cord-016808-gy8d8285 132 13 , , , cord-016808-gy8d8285 132 14 2005 2005 CD cord-016808-gy8d8285 132 15 ) ) -RRB- cord-016808-gy8d8285 132 16 . . . cord-016808-gy8d8285 133 1 The the DT cord-016808-gy8d8285 133 2 human human JJ cord-016808-gy8d8285 133 3 immunodeficiency immunodeficiency NN cord-016808-gy8d8285 133 4 viruses virus NNS cord-016808-gy8d8285 133 5 ( ( -LRB- cord-016808-gy8d8285 133 6 HIV HIV NNP cord-016808-gy8d8285 133 7 ) ) -RRB- cord-016808-gy8d8285 133 8 originated originate VBD cord-016808-gy8d8285 133 9 from from IN cord-016808-gy8d8285 133 10 simian simian JJ cord-016808-gy8d8285 133 11 immunodeficiency immunodeficiency NN cord-016808-gy8d8285 133 12 viruses virus NNS cord-016808-gy8d8285 133 13 ( ( -LRB- cord-016808-gy8d8285 133 14 SIV SIV NNP cord-016808-gy8d8285 133 15 ) ) -RRB- cord-016808-gy8d8285 133 16 . . . cord-016808-gy8d8285 134 1 SIVs siv NNS cord-016808-gy8d8285 134 2 are be VBP cord-016808-gy8d8285 134 3 viruses virus NNS cord-016808-gy8d8285 134 4 that that WDT cord-016808-gy8d8285 134 5 infect infect VBP cord-016808-gy8d8285 134 6 some some DT cord-016808-gy8d8285 134 7 40 40 CD cord-016808-gy8d8285 134 8 different different JJ cord-016808-gy8d8285 134 9 nonhuman nonhuman NN cord-016808-gy8d8285 134 10 primate primate NN cord-016808-gy8d8285 134 11 species specie NNS cord-016808-gy8d8285 134 12 in in IN cord-016808-gy8d8285 134 13 sub sub JJ cord-016808-gy8d8285 134 14 - - JJ cord-016808-gy8d8285 134 15 Saharan saharan JJ cord-016808-gy8d8285 134 16 Africa Africa NNP cord-016808-gy8d8285 134 17 . . . cord-016808-gy8d8285 135 1 Primates primate NNS cord-016808-gy8d8285 135 2 naturally naturally RB cord-016808-gy8d8285 135 3 infected infect VBN cord-016808-gy8d8285 135 4 with with IN cord-016808-gy8d8285 135 5 SIV SIV NNP cord-016808-gy8d8285 135 6 do do VBP cord-016808-gy8d8285 135 7 not not RB cord-016808-gy8d8285 135 8 appear appear VB cord-016808-gy8d8285 135 9 to to TO cord-016808-gy8d8285 135 10 develop develop VB cord-016808-gy8d8285 135 11 immunodeficiency immunodeficiency NN cord-016808-gy8d8285 135 12 . . . cord-016808-gy8d8285 136 1 The the DT cord-016808-gy8d8285 136 2 immediate immediate JJ cord-016808-gy8d8285 136 3 precursor precursor NN cord-016808-gy8d8285 136 4 of of IN cord-016808-gy8d8285 136 5 HIV-1 HIV-1 NNP cord-016808-gy8d8285 136 6 was be VBD cord-016808-gy8d8285 136 7 a a DT cord-016808-gy8d8285 136 8 virus virus NN cord-016808-gy8d8285 136 9 , , , cord-016808-gy8d8285 136 10 SIVcpz SIVcpz NNP cord-016808-gy8d8285 136 11 , , , cord-016808-gy8d8285 136 12 which which WDT cord-016808-gy8d8285 136 13 infects infect VBZ cord-016808-gy8d8285 136 14 chimpanzees chimpanzee NNS cord-016808-gy8d8285 136 15 of of IN cord-016808-gy8d8285 136 16 the the DT cord-016808-gy8d8285 136 17 subspecies subspecies NN cord-016808-gy8d8285 136 18 Pan Pan NNP cord-016808-gy8d8285 136 19 troglodytes troglodyte NNS cord-016808-gy8d8285 136 20 troglodytes troglodyte NNS cord-016808-gy8d8285 136 21 in in IN cord-016808-gy8d8285 136 22 West West NNP cord-016808-gy8d8285 136 23 Central Central NNP cord-016808-gy8d8285 136 24 Africa Africa NNP cord-016808-gy8d8285 136 25 . . . cord-016808-gy8d8285 137 1 Interestingly interestingly RB cord-016808-gy8d8285 137 2 , , , cord-016808-gy8d8285 137 3 SIVcpz sivcpz NN cord-016808-gy8d8285 137 4 strains strain NNS cord-016808-gy8d8285 137 5 have have VBP cord-016808-gy8d8285 137 6 been be VBN cord-016808-gy8d8285 137 7 transmitted transmit VBN cord-016808-gy8d8285 137 8 from from IN cord-016808-gy8d8285 137 9 chimps chimp NNS cord-016808-gy8d8285 137 10 to to IN cord-016808-gy8d8285 137 11 humans human NNS cord-016808-gy8d8285 137 12 on on IN cord-016808-gy8d8285 137 13 at at RB cord-016808-gy8d8285 137 14 least least RBS cord-016808-gy8d8285 137 15 three three CD cord-016808-gy8d8285 137 16 independent independent JJ cord-016808-gy8d8285 137 17 occasions occasion NNS cord-016808-gy8d8285 137 18 , , , cord-016808-gy8d8285 137 19 with with IN cord-016808-gy8d8285 137 20 the the DT cord-016808-gy8d8285 137 21 current current JJ cord-016808-gy8d8285 137 22 HIV-1 HIV-1 NNP cord-016808-gy8d8285 137 23 group group NN cord-016808-gy8d8285 137 24 M M NNP cord-016808-gy8d8285 137 25 pandemic pandemic NN cord-016808-gy8d8285 137 26 strain strain NN cord-016808-gy8d8285 137 27 ( ( -LRB- cord-016808-gy8d8285 137 28 > > NFP cord-016808-gy8d8285 137 29 60 60 CD cord-016808-gy8d8285 137 30 million million CD cord-016808-gy8d8285 137 31 people people NNS cord-016808-gy8d8285 137 32 infected infect VBN cord-016808-gy8d8285 137 33 , , , cord-016808-gy8d8285 137 34 > > XX cord-016808-gy8d8285 137 35 20 20 CD cord-016808-gy8d8285 137 36 million million CD cord-016808-gy8d8285 137 37 deaths death NNS cord-016808-gy8d8285 137 38 ) ) -RRB- cord-016808-gy8d8285 137 39 resulting result VBG cord-016808-gy8d8285 137 40 from from IN cord-016808-gy8d8285 137 41 just just RB cord-016808-gy8d8285 137 42 one one CD cord-016808-gy8d8285 137 43 of of IN cord-016808-gy8d8285 137 44 these these DT cord-016808-gy8d8285 137 45 transmissions transmission NNS cord-016808-gy8d8285 137 46 . . . cord-016808-gy8d8285 138 1 The the DT cord-016808-gy8d8285 138 2 trans trans JJ cord-016808-gy8d8285 138 3 - - JJ cord-016808-gy8d8285 138 4 species species JJ cord-016808-gy8d8285 138 5 transmission transmission NN cord-016808-gy8d8285 138 6 appeared appear VBD cord-016808-gy8d8285 138 7 to to TO cord-016808-gy8d8285 138 8 require require VB cord-016808-gy8d8285 138 9 multiple multiple JJ cord-016808-gy8d8285 138 10 adaptation adaptation NN cord-016808-gy8d8285 138 11 events event NNS cord-016808-gy8d8285 138 12 , , , cord-016808-gy8d8285 138 13 such such JJ cord-016808-gy8d8285 138 14 as as IN cord-016808-gy8d8285 138 15 changed change VBN cord-016808-gy8d8285 138 16 transmission transmission NN cord-016808-gy8d8285 138 17 mode mode NN cord-016808-gy8d8285 138 18 ( ( -LRB- cord-016808-gy8d8285 138 19 from from IN cord-016808-gy8d8285 138 20 bite bite NN cord-016808-gy8d8285 138 21 / / SYM cord-016808-gy8d8285 138 22 wounds wound NNS cord-016808-gy8d8285 138 23 to to IN cord-016808-gy8d8285 138 24 sexual sexual JJ cord-016808-gy8d8285 138 25 ) ) -RRB- cord-016808-gy8d8285 138 26 , , , cord-016808-gy8d8285 138 27 adaptation adaptation NN cord-016808-gy8d8285 138 28 to to IN cord-016808-gy8d8285 138 29 receptors receptor NNS cord-016808-gy8d8285 138 30 and and CC cord-016808-gy8d8285 138 31 overcoming overcome VBG cord-016808-gy8d8285 138 32 some some DT cord-016808-gy8d8285 138 33 post post JJ cord-016808-gy8d8285 138 34 - - JJ cord-016808-gy8d8285 138 35 entry entry JJ cord-016808-gy8d8285 138 36 barriers barrier NNS cord-016808-gy8d8285 138 37 ( ( -LRB- cord-016808-gy8d8285 138 38 Gao Gao NNP cord-016808-gy8d8285 138 39 et et NNP cord-016808-gy8d8285 138 40 al al NNP cord-016808-gy8d8285 138 41 . . NNP cord-016808-gy8d8285 138 42 , , , cord-016808-gy8d8285 138 43 1999 1999 CD cord-016808-gy8d8285 138 44 ; ; : cord-016808-gy8d8285 138 45 Heeney Heeney NNP cord-016808-gy8d8285 138 46 et et NNP cord-016808-gy8d8285 138 47 al al NNP cord-016808-gy8d8285 138 48 . . NNP cord-016808-gy8d8285 138 49 , , , cord-016808-gy8d8285 138 50 2006 2006 CD cord-016808-gy8d8285 138 51 ) ) -RRB- cord-016808-gy8d8285 138 52 . . . cord-016808-gy8d8285 139 1 In in IN cord-016808-gy8d8285 139 2 human human JJ cord-016808-gy8d8285 139 3 populations population NNS cord-016808-gy8d8285 139 4 and and CC cord-016808-gy8d8285 139 5 individuals individual NNS cord-016808-gy8d8285 139 6 , , , cord-016808-gy8d8285 139 7 HIV HIV NNP cord-016808-gy8d8285 139 8 is be VBZ cord-016808-gy8d8285 139 9 rapidly rapidly RB cord-016808-gy8d8285 139 10 evolving evolve VBG cord-016808-gy8d8285 139 11 by by IN cord-016808-gy8d8285 139 12 mutations mutation NNS cord-016808-gy8d8285 139 13 and and CC cord-016808-gy8d8285 139 14 recombination recombination NN cord-016808-gy8d8285 139 15 , , , cord-016808-gy8d8285 139 16 making make VBG cord-016808-gy8d8285 139 17 antiviral antiviral JJ cord-016808-gy8d8285 139 18 therapy therapy NN cord-016808-gy8d8285 139 19 a a DT cord-016808-gy8d8285 139 20 very very RB cord-016808-gy8d8285 139 21 difficult difficult JJ cord-016808-gy8d8285 139 22 job job NN cord-016808-gy8d8285 139 23 . . . cord-016808-gy8d8285 140 1 Major major JJ cord-016808-gy8d8285 140 2 lessons lesson NNS cord-016808-gy8d8285 140 3 derived derive VBN cord-016808-gy8d8285 140 4 from from IN cord-016808-gy8d8285 140 5 studies study NNS cord-016808-gy8d8285 140 6 of of IN cord-016808-gy8d8285 140 7 emerging emerge VBG cord-016808-gy8d8285 140 8 viral viral JJ cord-016808-gy8d8285 140 9 infections infection NNS cord-016808-gy8d8285 140 10 are be VBP cord-016808-gy8d8285 140 11 as as IN cord-016808-gy8d8285 140 12 follows follow VBZ cord-016808-gy8d8285 140 13 . . . cord-016808-gy8d8285 141 1 New new JJ cord-016808-gy8d8285 141 2 human human JJ cord-016808-gy8d8285 141 3 pathogenic pathogenic JJ cord-016808-gy8d8285 141 4 viruses virus NNS cord-016808-gy8d8285 141 5 are be VBP cord-016808-gy8d8285 141 6 usually usually RB cord-016808-gy8d8285 141 7 originating originate VBG cord-016808-gy8d8285 141 8 from from IN cord-016808-gy8d8285 141 9 relatively relatively RB cord-016808-gy8d8285 141 10 low low JJ cord-016808-gy8d8285 141 11 pathogenic pathogenic JJ cord-016808-gy8d8285 141 12 animal animal NN cord-016808-gy8d8285 141 13 viruses virus NNS cord-016808-gy8d8285 141 14 by by IN cord-016808-gy8d8285 141 15 changing change VBG cord-016808-gy8d8285 141 16 host host NN cord-016808-gy8d8285 141 17 range range NN cord-016808-gy8d8285 141 18 ( ( -LRB- cord-016808-gy8d8285 141 19 crossing cross VBG cord-016808-gy8d8285 141 20 interspecies interspecie NNS cord-016808-gy8d8285 141 21 barrier barrier NN cord-016808-gy8d8285 141 22 ) ) -RRB- cord-016808-gy8d8285 141 23 . . . cord-016808-gy8d8285 142 1 They -PRON- PRP cord-016808-gy8d8285 142 2 may may MD cord-016808-gy8d8285 142 3 become become VB cord-016808-gy8d8285 142 4 highly highly RB cord-016808-gy8d8285 142 5 pathogenic pathogenic JJ cord-016808-gy8d8285 142 6 in in IN cord-016808-gy8d8285 142 7 humans human NNS cord-016808-gy8d8285 142 8 , , , cord-016808-gy8d8285 142 9 in in IN cord-016808-gy8d8285 142 10 particular particular JJ cord-016808-gy8d8285 142 11 , , , cord-016808-gy8d8285 142 12 because because IN cord-016808-gy8d8285 142 13 they -PRON- PRP cord-016808-gy8d8285 142 14 , , , cord-016808-gy8d8285 142 15 as as IN cord-016808-gy8d8285 142 16 unknown unknown JJ cord-016808-gy8d8285 142 17 invaders invader NNS cord-016808-gy8d8285 142 18 , , , cord-016808-gy8d8285 142 19 are be VBP cord-016808-gy8d8285 142 20 met meet VBN cord-016808-gy8d8285 142 21 with with IN cord-016808-gy8d8285 142 22 a a DT cord-016808-gy8d8285 142 23 hyper hyper JJ cord-016808-gy8d8285 142 24 - - JJ cord-016808-gy8d8285 142 25 reactive reactive JJ cord-016808-gy8d8285 142 26 defense defense NN cord-016808-gy8d8285 142 27 reaction reaction NN cord-016808-gy8d8285 142 28 leading lead VBG cord-016808-gy8d8285 142 29 to to IN cord-016808-gy8d8285 142 30 extensive extensive JJ cord-016808-gy8d8285 142 31 host host NN cord-016808-gy8d8285 142 32 damage damage NN cord-016808-gy8d8285 142 33 , , , cord-016808-gy8d8285 142 34 whereas whereas IN cord-016808-gy8d8285 142 35 the the DT cord-016808-gy8d8285 142 36 viruses virus NNS cord-016808-gy8d8285 142 37 carelessly carelessly RB cord-016808-gy8d8285 142 38 employ employ VBP cord-016808-gy8d8285 142 39 in in IN cord-016808-gy8d8285 142 40 full full JJ cord-016808-gy8d8285 142 41 their -PRON- PRP$ cord-016808-gy8d8285 142 42 anti anti JJ cord-016808-gy8d8285 142 43 - - JJ cord-016808-gy8d8285 142 44 defensive defensive JJ cord-016808-gy8d8285 142 45 tools tool NNS cord-016808-gy8d8285 142 46 . . . cord-016808-gy8d8285 143 1 Further further JJ cord-016808-gy8d8285 143 2 rapid rapid JJ cord-016808-gy8d8285 143 3 evolutionary evolutionary JJ cord-016808-gy8d8285 143 4 rates rate NNS cord-016808-gy8d8285 143 5 may may MD cord-016808-gy8d8285 143 6 contribute contribute VB cord-016808-gy8d8285 143 7 to to IN cord-016808-gy8d8285 143 8 difficulty difficulty NN cord-016808-gy8d8285 143 9 in in IN cord-016808-gy8d8285 143 10 combating combat VBG cord-016808-gy8d8285 143 11 these these DT cord-016808-gy8d8285 143 12 infections infection NNS cord-016808-gy8d8285 143 13 . . . cord-016808-gy8d8285 144 1 On on IN cord-016808-gy8d8285 144 2 the the DT cord-016808-gy8d8285 144 3 other other JJ cord-016808-gy8d8285 144 4 hand hand NN cord-016808-gy8d8285 144 5 , , , cord-016808-gy8d8285 144 6 long long JJ cord-016808-gy8d8285 144 7 - - HYPH cord-016808-gy8d8285 144 8 term term NN cord-016808-gy8d8285 144 9 evolution evolution NN cord-016808-gy8d8285 144 10 of of IN cord-016808-gy8d8285 144 11 such such JJ cord-016808-gy8d8285 144 12 viruses virus NNS cord-016808-gy8d8285 144 13 may may MD cord-016808-gy8d8285 144 14 lead lead VB cord-016808-gy8d8285 144 15 to to IN cord-016808-gy8d8285 144 16 a a DT cord-016808-gy8d8285 144 17 decrease decrease NN cord-016808-gy8d8285 144 18 in in IN cord-016808-gy8d8285 144 19 their -PRON- PRP$ cord-016808-gy8d8285 144 20 pathogenicity pathogenicity NN cord-016808-gy8d8285 144 21 and and CC cord-016808-gy8d8285 144 22 human human JJ cord-016808-gy8d8285 144 23 evolution evolution NN cord-016808-gy8d8285 144 24 may may MD cord-016808-gy8d8285 144 25 probably probably RB cord-016808-gy8d8285 144 26 result result VB cord-016808-gy8d8285 144 27 in in IN cord-016808-gy8d8285 144 28 an an DT cord-016808-gy8d8285 144 29 increased increase VBN cord-016808-gy8d8285 144 30 resistance resistance NN cord-016808-gy8d8285 144 31 to to IN cord-016808-gy8d8285 144 32 such such JJ cord-016808-gy8d8285 144 33 viruses virus NNS cord-016808-gy8d8285 144 34 . . . cord-016808-gy8d8285 145 1 We -PRON- PRP cord-016808-gy8d8285 145 2 may may MD cord-016808-gy8d8285 145 3 blame blame VB cord-016808-gy8d8285 145 4 viruses virus NNS cord-016808-gy8d8285 145 5 for for IN cord-016808-gy8d8285 145 6 severe severe JJ cord-016808-gy8d8285 145 7 diseases disease NNS cord-016808-gy8d8285 145 8 and and CC cord-016808-gy8d8285 145 9 even even RB cord-016808-gy8d8285 145 10 should should MD cord-016808-gy8d8285 145 11 actively actively RB cord-016808-gy8d8285 145 12 combat combat VB cord-016808-gy8d8285 145 13 them -PRON- PRP cord-016808-gy8d8285 146 1 but but CC cord-016808-gy8d8285 146 2 we -PRON- PRP cord-016808-gy8d8285 146 3 should should MD cord-016808-gy8d8285 146 4 never never RB cord-016808-gy8d8285 146 5 forget forget VB cord-016808-gy8d8285 146 6 that that IN cord-016808-gy8d8285 146 7 we -PRON- PRP cord-016808-gy8d8285 146 8 owe owe VBP cord-016808-gy8d8285 146 9 to to IN cord-016808-gy8d8285 146 10 viruses virus NNS cord-016808-gy8d8285 146 11 very very RB cord-016808-gy8d8285 146 12 much much RB cord-016808-gy8d8285 146 13 for for IN cord-016808-gy8d8285 146 14 the the DT cord-016808-gy8d8285 146 15 existence existence NN cord-016808-gy8d8285 146 16 of of IN cord-016808-gy8d8285 146 17 the the DT cord-016808-gy8d8285 146 18 live live JJ cord-016808-gy8d8285 146 19 Nature nature NN cord-016808-gy8d8285 146 20 and and CC cord-016808-gy8d8285 146 21 for for IN cord-016808-gy8d8285 146 22 our -PRON- PRP$ cord-016808-gy8d8285 146 23 own own JJ cord-016808-gy8d8285 146 24 existence existence NN cord-016808-gy8d8285 146 25 . . . cord-016808-gy8d8285 147 1 Towards towards IN cord-016808-gy8d8285 147 2 the the DT cord-016808-gy8d8285 147 3 system system NN cord-016808-gy8d8285 147 4 of of IN cord-016808-gy8d8285 147 5 viruses virus NNS cord-016808-gy8d8285 147 6 Expression expression NN cord-016808-gy8d8285 147 7 of of IN cord-016808-gy8d8285 147 8 animal animal NN cord-016808-gy8d8285 147 9 virus virus NN cord-016808-gy8d8285 147 10 genomes genome NNS cord-016808-gy8d8285 148 1 Do do VBP cord-016808-gy8d8285 148 2 viruses virus NNS cord-016808-gy8d8285 148 3 form form VB cord-016808-gy8d8285 148 4 lineages lineage NNS cord-016808-gy8d8285 148 5 across across IN cord-016808-gy8d8285 148 6 different different JJ cord-016808-gy8d8285 148 7 domains domain NNS cord-016808-gy8d8285 148 8 of of IN cord-016808-gy8d8285 148 9 life life NN cord-016808-gy8d8285 148 10 ? ? . cord-016808-gy8d8285 149 1 Here here RB cord-016808-gy8d8285 149 2 a a DT cord-016808-gy8d8285 149 3 virus virus NN cord-016808-gy8d8285 149 4 , , , cord-016808-gy8d8285 149 5 there there EX cord-016808-gy8d8285 149 6 a a DT cord-016808-gy8d8285 149 7 virus virus NN cord-016808-gy8d8285 149 8 , , , cord-016808-gy8d8285 149 9 everywhere everywhere RB cord-016808-gy8d8285 149 10 the the DT cord-016808-gy8d8285 149 11 same same JJ cord-016808-gy8d8285 149 12 virus virus NN cord-016808-gy8d8285 149 13 ? ? . cord-016808-gy8d8285 150 1 Three three CD cord-016808-gy8d8285 150 2 RNA RNA NNP cord-016808-gy8d8285 150 3 cells cell NNS cord-016808-gy8d8285 150 4 for for IN cord-016808-gy8d8285 150 5 ribosomal ribosomal JJ cord-016808-gy8d8285 150 6 lineages lineage NNS cord-016808-gy8d8285 150 7 and and CC cord-016808-gy8d8285 150 8 three three CD cord-016808-gy8d8285 150 9 DNA dna NN cord-016808-gy8d8285 150 10 viruses virus NNS cord-016808-gy8d8285 150 11 to to TO cord-016808-gy8d8285 150 12 replicate replicate VB cord-016808-gy8d8285 150 13 their -PRON- PRP$ cord-016808-gy8d8285 150 14 genomes genome NNS cord-016808-gy8d8285 150 15 : : : cord-016808-gy8d8285 150 16 A a DT cord-016808-gy8d8285 150 17 hypothesis hypothesis NN cord-016808-gy8d8285 150 18 for for IN cord-016808-gy8d8285 150 19 the the DT cord-016808-gy8d8285 150 20 origin origin NN cord-016808-gy8d8285 150 21 of of IN cord-016808-gy8d8285 150 22 cellular cellular JJ cord-016808-gy8d8285 150 23 domain domain NN cord-016808-gy8d8285 150 24 Origin Origin NNP cord-016808-gy8d8285 150 25 of of IN cord-016808-gy8d8285 150 26 HIV-1 HIV-1 NNP cord-016808-gy8d8285 150 27 in in IN cord-016808-gy8d8285 150 28 the the DT cord-016808-gy8d8285 150 29 chimpanzee chimpanzee NN cord-016808-gy8d8285 150 30 Pan Pan NNP cord-016808-gy8d8285 150 31 troglodytes troglodyte NNS cord-016808-gy8d8285 150 32 troglodytes troglodyte NNS cord-016808-gy8d8285 150 33 Functional functional JJ cord-016808-gy8d8285 150 34 and and CC cord-016808-gy8d8285 150 35 genetic genetic JJ cord-016808-gy8d8285 150 36 plasticities plasticity NNS cord-016808-gy8d8285 150 37 of of IN cord-016808-gy8d8285 150 38 the the DT cord-016808-gy8d8285 150 39 poliovirus poliovirus NN cord-016808-gy8d8285 150 40 genome genome NN cord-016808-gy8d8285 150 41 : : : cord-016808-gy8d8285 150 42 Quasi quasi JJ cord-016808-gy8d8285 150 43 - - JJ cord-016808-gy8d8285 150 44 infectious infectious JJ cord-016808-gy8d8285 150 45 RNAs rna NNS cord-016808-gy8d8285 150 46 modified modify VBN cord-016808-gy8d8285 150 47 in in IN cord-016808-gy8d8285 150 48 the the DT cord-016808-gy8d8285 150 49 5 5 CD cord-016808-gy8d8285 150 50 -untranslated -untranslated JJ cord-016808-gy8d8285 150 51 region region NN cord-016808-gy8d8285 150 52 yield yield VBP cord-016808-gy8d8285 150 53 a a DT cord-016808-gy8d8285 150 54 variety variety NN cord-016808-gy8d8285 150 55 of of IN cord-016808-gy8d8285 150 56 pseudorevertants pseudorevertant NNS cord-016808-gy8d8285 150 57 Nonreplicative Nonreplicative NNP cord-016808-gy8d8285 150 58 RNA RNA NNP cord-016808-gy8d8285 150 59 recombination recombination NN cord-016808-gy8d8285 150 60 in in IN cord-016808-gy8d8285 150 61 poliovirus poliovirus NN cord-016808-gy8d8285 150 62 Nonreplicative Nonreplicative NNP cord-016808-gy8d8285 150 63 homologous homologous JJ cord-016808-gy8d8285 150 64 RNA RNA NNP cord-016808-gy8d8285 150 65 recombination recombination NN cord-016808-gy8d8285 150 66 : : : cord-016808-gy8d8285 150 67 Promiscuous promiscuous JJ cord-016808-gy8d8285 150 68 joining joining NN cord-016808-gy8d8285 150 69 of of IN cord-016808-gy8d8285 150 70 RNA RNA NNP cord-016808-gy8d8285 150 71 pieces piece NNS cord-016808-gy8d8285 150 72 ? ? . cord-016808-gy8d8285 151 1 Origins origin NNS cord-016808-gy8d8285 151 2 of of IN cord-016808-gy8d8285 151 3 HIV HIV NNP cord-016808-gy8d8285 151 4 and and CC cord-016808-gy8d8285 151 5 the the DT cord-016808-gy8d8285 151 6 evolution evolution NN cord-016808-gy8d8285 151 7 of of IN cord-016808-gy8d8285 151 8 resistance resistance NN cord-016808-gy8d8285 151 9 to to IN cord-016808-gy8d8285 151 10 AIDS AIDS NNP cord-016808-gy8d8285 152 1 On on IN cord-016808-gy8d8285 152 2 the the DT cord-016808-gy8d8285 152 3 origin origin NN cord-016808-gy8d8285 152 4 of of IN cord-016808-gy8d8285 152 5 genomes genome NNS cord-016808-gy8d8285 152 6 and and CC cord-016808-gy8d8285 152 7 cells cell NNS cord-016808-gy8d8285 152 8 within within IN cord-016808-gy8d8285 152 9 inorganic inorganic JJ cord-016808-gy8d8285 152 10 compartments compartment NNS cord-016808-gy8d8285 153 1 The the DT cord-016808-gy8d8285 153 2 ancient ancient JJ cord-016808-gy8d8285 153 3 virus virus NN cord-016808-gy8d8285 153 4 world world NN cord-016808-gy8d8285 153 5 and and CC cord-016808-gy8d8285 153 6 evolution evolution NN cord-016808-gy8d8285 153 7 of of IN cord-016808-gy8d8285 153 8 cells cell NNS cord-016808-gy8d8285 153 9 Severe severe JJ cord-016808-gy8d8285 153 10 acute acute JJ cord-016808-gy8d8285 153 11 respiratory respiratory JJ cord-016808-gy8d8285 153 12 syndrome syndrome NN cord-016808-gy8d8285 153 13 coronavirus coronavirus NN cord-016808-gy8d8285 153 14 - - HYPH cord-016808-gy8d8285 153 15 like like JJ cord-016808-gy8d8285 153 16 virus virus NN cord-016808-gy8d8285 153 17 in in IN cord-016808-gy8d8285 153 18 Chinese chinese JJ cord-016808-gy8d8285 153 19 horseshoe horseshoe NN cord-016808-gy8d8285 153 20 bats bat NNS cord-016808-gy8d8285 153 21 Bats bat NNS cord-016808-gy8d8285 153 22 are be VBP cord-016808-gy8d8285 153 23 natural natural JJ cord-016808-gy8d8285 153 24 reservoirs reservoir NNS cord-016808-gy8d8285 153 25 of of IN cord-016808-gy8d8285 153 26 SARS SARS NNP cord-016808-gy8d8285 153 27 - - HYPH cord-016808-gy8d8285 153 28 like like JJ cord-016808-gy8d8285 153 29 coronaviruses coronaviruse NNS cord-016808-gy8d8285 154 1 A a DT cord-016808-gy8d8285 154 2 single single JJ cord-016808-gy8d8285 154 3 mutation mutation NN cord-016808-gy8d8285 154 4 in in IN cord-016808-gy8d8285 154 5 poliovirus poliovirus NN cord-016808-gy8d8285 154 6 RNA rna NN cord-016808-gy8d8285 154 7 - - HYPH cord-016808-gy8d8285 154 8 dependent dependent JJ cord-016808-gy8d8285 154 9 RNA RNA NNP cord-016808-gy8d8285 154 10 polymerase polymerase NN cord-016808-gy8d8285 154 11 confers confer VBZ cord-016808-gy8d8285 154 12 resistance resistance NN cord-016808-gy8d8285 154 13 to to IN cord-016808-gy8d8285 154 14 mutagenic mutagenic JJ cord-016808-gy8d8285 154 15 nucleotide nucleotide JJ cord-016808-gy8d8285 154 16 analogs analog NNS cord-016808-gy8d8285 154 17 via via IN cord-016808-gy8d8285 155 1 increased increase VBN cord-016808-gy8d8285 155 2 fidelity fidelity NN cord-016808-gy8d8285 155 3 Increased increase VBN cord-016808-gy8d8285 155 4 fidelity fidelity NN cord-016808-gy8d8285 155 5 reduces reduce VBZ cord-016808-gy8d8285 155 6 poliovirus poliovirus NN cord-016808-gy8d8285 155 7 fitness fitness NN cord-016808-gy8d8285 155 8 and and CC cord-016808-gy8d8285 155 9 virulence virulence NN cord-016808-gy8d8285 155 10 under under IN cord-016808-gy8d8285 155 11 selective selective JJ cord-016808-gy8d8285 155 12 pressure pressure NN cord-016808-gy8d8285 155 13 in in IN cord-016808-gy8d8285 155 14 mice mouse NNS cord-016808-gy8d8285 155 15 Prokaryotic Prokaryotic NNP cord-016808-gy8d8285 155 16 - - HYPH cord-016808-gy8d8285 155 17 like like JJ cord-016808-gy8d8285 155 18 cis cis NNP cord-016808-gy8d8285 155 19 element element NN cord-016808-gy8d8285 155 20 in in IN cord-016808-gy8d8285 155 21 the the DT cord-016808-gy8d8285 155 22 cap cap NN cord-016808-gy8d8285 155 23 - - HYPH cord-016808-gy8d8285 155 24 independent independent JJ cord-016808-gy8d8285 155 25 internal internal JJ cord-016808-gy8d8285 155 26 initiation initiation NN cord-016808-gy8d8285 155 27 of of IN cord-016808-gy8d8285 155 28 translation translation NN cord-016808-gy8d8285 155 29 on on IN cord-016808-gy8d8285 155 30 picornavirus picornavirus NNP cord-016808-gy8d8285 155 31 RNA RNA NNP cord-016808-gy8d8285 155 32 Cell cell NN cord-016808-gy8d8285 155 33 - - HYPH cord-016808-gy8d8285 155 34 specific specific JJ cord-016808-gy8d8285 155 35 proteins protein NNS cord-016808-gy8d8285 155 36 regulate regulate VBP cord-016808-gy8d8285 155 37 viral viral JJ cord-016808-gy8d8285 155 38 RNA RNA NNP cord-016808-gy8d8285 155 39 translation translation NN cord-016808-gy8d8285 155 40 and and CC cord-016808-gy8d8285 155 41 virus virus NN cord-016808-gy8d8285 155 42 - - HYPH cord-016808-gy8d8285 155 43 induced induce VBN cord-016808-gy8d8285 155 44 disease disease NN cord-016808-gy8d8285 155 45 Viruses virus NNS cord-016808-gy8d8285 155 46 in in IN cord-016808-gy8d8285 155 47 the the DT cord-016808-gy8d8285 155 48 sea sea NN cord-016808-gy8d8285 155 49 Characterization characterization NN cord-016808-gy8d8285 155 50 of of IN cord-016808-gy8d8285 155 51 the the DT cord-016808-gy8d8285 155 52 reconstructed reconstruct VBN cord-016808-gy8d8285 155 53 1918 1918 CD cord-016808-gy8d8285 155 54 Spanish spanish JJ cord-016808-gy8d8285 155 55 influenza influenza NN cord-016808-gy8d8285 155 56 pandemic pandemic NN cord-016808-gy8d8285 155 57 virus virus NN cord-016808-gy8d8285 155 58 . . . cord-016808-gy8d8285 156 1 Science science NN cord-016808-gy8d8285 156 2 Quasispecies Quasispecies NNP cord-016808-gy8d8285 156 3 diversity diversity NN cord-016808-gy8d8285 156 4 determines determine VBZ cord-016808-gy8d8285 156 5 pathogenesis pathogenesis NN cord-016808-gy8d8285 156 6 through through IN cord-016808-gy8d8285 156 7 cooperative cooperative JJ cord-016808-gy8d8285 156 8 interactions interaction NNS cord-016808-gy8d8285 156 9 in in IN cord-016808-gy8d8285 156 10 a a DT cord-016808-gy8d8285 156 11 viral viral JJ cord-016808-gy8d8285 156 12 population population NN