id sid tid token lemma pos cord-010027-r0tl01kq 1 1 key key NNP cord-010027-r0tl01kq 1 2 : : : cord-010027-r0tl01kq 1 3 cord-010027-r0tl01kq cord-010027-r0tl01kq JJ cord-010027-r0tl01kq 1 4 authors author NNS cord-010027-r0tl01kq 1 5 : : : cord-010027-r0tl01kq 2 1 nan nan NNP cord-010027-r0tl01kq 2 2 title title NN cord-010027-r0tl01kq 2 3 : : : cord-010027-r0tl01kq 2 4 Dublin Dublin NNP cord-010027-r0tl01kq 2 5 Pathology Pathology NNP cord-010027-r0tl01kq 2 6 2015 2015 CD cord-010027-r0tl01kq 2 7 . . . cord-010027-r0tl01kq 3 1 8th 8th NNP cord-010027-r0tl01kq 3 2 Joint Joint NNP cord-010027-r0tl01kq 3 3 Meeting Meeting NNP cord-010027-r0tl01kq 3 4 of of IN cord-010027-r0tl01kq 3 5 the the DT cord-010027-r0tl01kq 3 6 British British NNP cord-010027-r0tl01kq 3 7 Division Division NNP cord-010027-r0tl01kq 3 8 of of IN cord-010027-r0tl01kq 3 9 the the DT cord-010027-r0tl01kq 3 10 International International NNP cord-010027-r0tl01kq 3 11 Academy Academy NNP cord-010027-r0tl01kq 3 12 of of IN cord-010027-r0tl01kq 3 13 Pathology Pathology NNP cord-010027-r0tl01kq 3 14 and and CC cord-010027-r0tl01kq 3 15 the the DT cord-010027-r0tl01kq 3 16 Pathological Pathological NNP cord-010027-r0tl01kq 3 17 Society Society NNP cord-010027-r0tl01kq 3 18 of of IN cord-010027-r0tl01kq 3 19 Great Great NNP cord-010027-r0tl01kq 3 20 Britain Britain NNP cord-010027-r0tl01kq 3 21 & & CC cord-010027-r0tl01kq 3 22 Ireland Ireland NNP cord-010027-r0tl01kq 3 23 date date NN cord-010027-r0tl01kq 3 24 : : : cord-010027-r0tl01kq 3 25 2015 2015 CD cord-010027-r0tl01kq 3 26 - - HYPH cord-010027-r0tl01kq 3 27 09 09 CD cord-010027-r0tl01kq 3 28 - - SYM cord-010027-r0tl01kq 3 29 15 15 CD cord-010027-r0tl01kq 3 30 journal journal NN cord-010027-r0tl01kq 3 31 : : : cord-010027-r0tl01kq 4 1 J J NNP cord-010027-r0tl01kq 4 2 Pathol Pathol NNP cord-010027-r0tl01kq 4 3 DOI DOI NNP cord-010027-r0tl01kq 4 4 : : : cord-010027-r0tl01kq 5 1 10.1002 10.1002 CD cord-010027-r0tl01kq 5 2 / / SYM cord-010027-r0tl01kq 5 3 path.4631 path.4631 NNP cord-010027-r0tl01kq 5 4 sha sha NNP cord-010027-r0tl01kq 5 5 : : : cord-010027-r0tl01kq 5 6 f8fee87468d60e19bc12d9a88c189abcda28b98c f8fee87468d60e19bc12d9a88c189abcda28b98c ADD cord-010027-r0tl01kq 6 1 doc_id doc_id CD cord-010027-r0tl01kq 6 2 : : : cord-010027-r0tl01kq 6 3 10027 10027 CD cord-010027-r0tl01kq 6 4 cord_uid cord_uid NNS cord-010027-r0tl01kq 6 5 : : : cord-010027-r0tl01kq 6 6 r0tl01kq r0tl01kq . cord-010027-r0tl01kq 7 1 nan nan NNP cord-010027-r0tl01kq 8 1 The the DT cord-010027-r0tl01kq 8 2 Christie Christie NNP cord-010027-r0tl01kq 8 3 NHS NHS NNP cord-010027-r0tl01kq 8 4 Foundation Foundation NNP cord-010027-r0tl01kq 8 5 Trust Trust NNP cord-010027-r0tl01kq 8 6 , , , cord-010027-r0tl01kq 8 7 Manchester Manchester NNP cord-010027-r0tl01kq 8 8 , , , cord-010027-r0tl01kq 9 1 UK UK NNP cord-010027-r0tl01kq 9 2 One one CD cord-010027-r0tl01kq 9 3 controversy controversy NN cord-010027-r0tl01kq 9 4 in in IN cord-010027-r0tl01kq 9 5 preparing prepare VBG cord-010027-r0tl01kq 9 6 the the DT cord-010027-r0tl01kq 9 7 RCPath RCPath NNP cord-010027-r0tl01kq 9 8 " " `` cord-010027-r0tl01kq 9 9 Dataset dataset NN cord-010027-r0tl01kq 9 10 for for IN cord-010027-r0tl01kq 9 11 tumours tumour NNS cord-010027-r0tl01kq 9 12 of of IN cord-010027-r0tl01kq 9 13 the the DT cord-010027-r0tl01kq 9 14 urinary urinary JJ cord-010027-r0tl01kq 9 15 collecting collecting NN cord-010027-r0tl01kq 9 16 system system NN cord-010027-r0tl01kq 9 17 [ [ -LRB- cord-010027-r0tl01kq 9 18 2nd 2nd NNP cord-010027-r0tl01kq 9 19 edition edition NN cord-010027-r0tl01kq 9 20 ] ] -RRB- cord-010027-r0tl01kq 9 21 ) ) -RRB- cord-010027-r0tl01kq 9 22 " " '' cord-010027-r0tl01kq 9 23 , , , cord-010027-r0tl01kq 9 24 April April NNP cord-010027-r0tl01kq 9 25 2013 2013 CD cord-010027-r0tl01kq 9 26 was be VBD cord-010027-r0tl01kq 9 27 which which WDT cord-010027-r0tl01kq 9 28 WHO who WP cord-010027-r0tl01kq 9 29 grading grading NN cord-010027-r0tl01kq 9 30 scheme scheme NN cord-010027-r0tl01kq 9 31 ( ( -LRB- cord-010027-r0tl01kq 9 32 1973 1973 CD cord-010027-r0tl01kq 9 33 or or CC cord-010027-r0tl01kq 9 34 2004 2004 CD cord-010027-r0tl01kq 9 35 ) ) -RRB- cord-010027-r0tl01kq 9 36 to to TO cord-010027-r0tl01kq 9 37 use use VB cord-010027-r0tl01kq 9 38 for for IN cord-010027-r0tl01kq 9 39 urothelial urothelial JJ cord-010027-r0tl01kq 9 40 carcinoma carcinoma NN cord-010027-r0tl01kq 9 41 . . . cord-010027-r0tl01kq 10 1 Since since IN cord-010027-r0tl01kq 10 2 there there EX cord-010027-r0tl01kq 10 3 is be VBZ cord-010027-r0tl01kq 10 4 a a DT cord-010027-r0tl01kq 10 5 split split NN cord-010027-r0tl01kq 10 6 within within IN cord-010027-r0tl01kq 10 7 grade grade NN cord-010027-r0tl01kq 10 8 2 2 CD cord-010027-r0tl01kq 10 9 ( ( -LRB- cord-010027-r0tl01kq 10 10 1973 1973 CD cord-010027-r0tl01kq 10 11 ) ) -RRB- cord-010027-r0tl01kq 10 12 between between IN cord-010027-r0tl01kq 10 13 low low JJ cord-010027-r0tl01kq 10 14 grade grade NN cord-010027-r0tl01kq 10 15 & & CC cord-010027-r0tl01kq 10 16 high high JJ cord-010027-r0tl01kq 10 17 grade grade NN cord-010027-r0tl01kq 10 18 , , , cord-010027-r0tl01kq 10 19 use use NN cord-010027-r0tl01kq 10 20 of of IN cord-010027-r0tl01kq 10 21 both both DT cord-010027-r0tl01kq 10 22 schemes scheme NNS cord-010027-r0tl01kq 10 23 in in IN cord-010027-r0tl01kq 10 24 parallel parallel NN cord-010027-r0tl01kq 10 25 was be VBD cord-010027-r0tl01kq 10 26 recommended recommend VBN cord-010027-r0tl01kq 10 27 . . . cord-010027-r0tl01kq 11 1 This this DT cord-010027-r0tl01kq 11 2 has have VBZ cord-010027-r0tl01kq 11 3 the the DT cord-010027-r0tl01kq 11 4 advantage advantage NN cord-010027-r0tl01kq 11 5 of of IN cord-010027-r0tl01kq 11 6 better well JJR cord-010027-r0tl01kq 11 7 indicating indicate VBG cord-010027-r0tl01kq 11 8 where where WRB cord-010027-r0tl01kq 11 9 a a DT cord-010027-r0tl01kq 11 10 particular particular JJ cord-010027-r0tl01kq 11 11 patient patient NN cord-010027-r0tl01kq 11 12 lies lie VBZ cord-010027-r0tl01kq 11 13 in in IN cord-010027-r0tl01kq 11 14 the the DT cord-010027-r0tl01kq 11 15 grading grading NN cord-010027-r0tl01kq 11 16 continuum continuum NN cord-010027-r0tl01kq 11 17 & & CC cord-010027-r0tl01kq 11 18 minimises minimise VBZ cord-010027-r0tl01kq 11 19 the the DT cord-010027-r0tl01kq 11 20 consequences consequence NNS cord-010027-r0tl01kq 11 21 of of IN cord-010027-r0tl01kq 11 22 ' ' `` cord-010027-r0tl01kq 11 23 grading grading NN cord-010027-r0tl01kq 11 24 error error NN cord-010027-r0tl01kq 11 25 ' ' '' cord-010027-r0tl01kq 11 26 for for IN cord-010027-r0tl01kq 11 27 cases case NNS cord-010027-r0tl01kq 11 28 close close JJ cord-010027-r0tl01kq 11 29 to to IN cord-010027-r0tl01kq 11 30 the the DT cord-010027-r0tl01kq 11 31 threshold threshold NN cord-010027-r0tl01kq 11 32 between between IN cord-010027-r0tl01kq 11 33 low low JJ cord-010027-r0tl01kq 11 34 & & CC cord-010027-r0tl01kq 11 35 high high JJ cord-010027-r0tl01kq 11 36 grade grade NN cord-010027-r0tl01kq 11 37 in in IN cord-010027-r0tl01kq 11 38 the the DT cord-010027-r0tl01kq 11 39 2004 2004 CD cord-010027-r0tl01kq 11 40 scheme scheme NN cord-010027-r0tl01kq 11 41 , , , cord-010027-r0tl01kq 11 42 ( ( -LRB- cord-010027-r0tl01kq 11 43 a a DT cord-010027-r0tl01kq 11 44 critical critical JJ cord-010027-r0tl01kq 11 45 distinction distinction NN cord-010027-r0tl01kq 11 46 for for IN cord-010027-r0tl01kq 11 47 management management NN cord-010027-r0tl01kq 11 48 if if IN cord-010027-r0tl01kq 11 49 2004 2004 CD cord-010027-r0tl01kq 11 50 WHO who WP cord-010027-r0tl01kq 11 51 grading grading NN cord-010027-r0tl01kq 11 52 is be VBZ cord-010027-r0tl01kq 11 53 used use VBN cord-010027-r0tl01kq 11 54 in in IN cord-010027-r0tl01kq 11 55 isolation isolation NN cord-010027-r0tl01kq 11 56 ) ) -RRB- cord-010027-r0tl01kq 11 57 . . . cord-010027-r0tl01kq 12 1 The the DT cord-010027-r0tl01kq 12 2 2015 2015 CD cord-010027-r0tl01kq 12 3 NICE nice JJ cord-010027-r0tl01kq 12 4 guidance guidance NN cord-010027-r0tl01kq 12 5 on on IN cord-010027-r0tl01kq 12 6 bladder bladder NN cord-010027-r0tl01kq 12 7 cancer cancer NN cord-010027-r0tl01kq 12 8 ( ( -LRB- cord-010027-r0tl01kq 12 9 http://www.nice.org.uk/guidance/ http://www.nice.org.uk/guidance/ NNP cord-010027-r0tl01kq 12 10 ng2 ng2 NNP cord-010027-r0tl01kq 12 11 ) ) -RRB- cord-010027-r0tl01kq 12 12 incorporates incorporate VBZ cord-010027-r0tl01kq 12 13 risk risk NN cord-010027-r0tl01kq 12 14 stratification stratification NN cord-010027-r0tl01kq 12 15 tables table NNS cord-010027-r0tl01kq 12 16 for for IN cord-010027-r0tl01kq 12 17 Ta Ta NNP cord-010027-r0tl01kq 12 18 / / SYM cord-010027-r0tl01kq 12 19 T1 T1 NNP cord-010027-r0tl01kq 12 20 bladder bladder NN cord-010027-r0tl01kq 12 21 cancer cancer NN cord-010027-r0tl01kq 12 22 utilizing utilize VBG cord-010027-r0tl01kq 12 23 this this DT cord-010027-r0tl01kq 12 24 parallel parallel NN cord-010027-r0tl01kq 12 25 WHO who WP cord-010027-r0tl01kq 12 26 grading grade VBG cord-010027-r0tl01kq 12 27 recommendation recommendation NN cord-010027-r0tl01kq 12 28 in in IN cord-010027-r0tl01kq 12 29 a a DT cord-010027-r0tl01kq 12 30 multiparameter multiparameter NN cord-010027-r0tl01kq 12 31 formula formula NN cord-010027-r0tl01kq 12 32 that that WDT cord-010027-r0tl01kq 12 33 also also RB cord-010027-r0tl01kq 12 34 considers consider VBZ cord-010027-r0tl01kq 12 35 tumour tumour NN cord-010027-r0tl01kq 12 36 size size NN cord-010027-r0tl01kq 12 37 , , , cord-010027-r0tl01kq 12 38 pT pt JJ cord-010027-r0tl01kq 12 39 classification classification NN cord-010027-r0tl01kq 12 40 and and CC cord-010027-r0tl01kq 12 41 the the DT cord-010027-r0tl01kq 12 42 presence presence NN cord-010027-r0tl01kq 12 43 / / SYM cord-010027-r0tl01kq 12 44 absence absence NN cord-010027-r0tl01kq 12 45 of of IN cord-010027-r0tl01kq 12 46 CIS CIS NNP cord-010027-r0tl01kq 12 47 or or CC cord-010027-r0tl01kq 12 48 aggressive aggressive JJ cord-010027-r0tl01kq 12 49 subtype(s subtype(s NN cord-010027-r0tl01kq 12 50 ) ) -RRB- cord-010027-r0tl01kq 12 51 . . . cord-010027-r0tl01kq 13 1 Amongst amongst IN cord-010027-r0tl01kq 13 2 the the DT cord-010027-r0tl01kq 13 3 more more RBR cord-010027-r0tl01kq 13 4 aggressive aggressive JJ cord-010027-r0tl01kq 13 5 bladder bladder NN cord-010027-r0tl01kq 13 6 cancer cancer NN cord-010027-r0tl01kq 13 7 subtypes subtype NNS cord-010027-r0tl01kq 13 8 is be VBZ cord-010027-r0tl01kq 13 9 invasive invasive JJ cord-010027-r0tl01kq 13 10 micropapillary micropapillary JJ cord-010027-r0tl01kq 13 11 urothelial urothelial JJ cord-010027-r0tl01kq 13 12 carcinoma carcinoma NN cord-010027-r0tl01kq 13 13 and and CC cord-010027-r0tl01kq 13 14 the the DT cord-010027-r0tl01kq 13 15 nested nested JJ cord-010027-r0tl01kq 13 16 variant variant NN cord-010027-r0tl01kq 13 17 . . . cord-010027-r0tl01kq 14 1 A a DT cord-010027-r0tl01kq 14 2 bladder bladder NN cord-010027-r0tl01kq 14 3 origin origin NN cord-010027-r0tl01kq 14 4 can can MD cord-010027-r0tl01kq 14 5 be be VB cord-010027-r0tl01kq 14 6 difficult difficult JJ cord-010027-r0tl01kq 14 7 to to TO cord-010027-r0tl01kq 14 8 recognise recognise VB cord-010027-r0tl01kq 14 9 at at IN cord-010027-r0tl01kq 14 10 metastatic metastatic JJ cord-010027-r0tl01kq 14 11 sites site NNS cord-010027-r0tl01kq 14 12 , , , cord-010027-r0tl01kq 14 13 especially especially RB cord-010027-r0tl01kq 14 14 for for IN cord-010027-r0tl01kq 14 15 micropapillary micropapillary NNP cord-010027-r0tl01kq 14 16 and and CC cord-010027-r0tl01kq 14 17 discohesive discohesive NNP cord-010027-r0tl01kq 14 18 / / SYM cord-010027-r0tl01kq 14 19 plasmacytoid plasmacytoid NN cord-010027-r0tl01kq 14 20 subtypes subtype NNS cord-010027-r0tl01kq 14 21 . . . cord-010027-r0tl01kq 15 1 Uroplakin Uroplakin NNP cord-010027-r0tl01kq 15 2 II II NNP cord-010027-r0tl01kq 15 3 has have VBZ cord-010027-r0tl01kq 15 4 recently recently RB cord-010027-r0tl01kq 15 5 become become VBN cord-010027-r0tl01kq 15 6 available available JJ cord-010027-r0tl01kq 15 7 , , , cord-010027-r0tl01kq 15 8 is be VBZ cord-010027-r0tl01kq 15 9 more more RBR cord-010027-r0tl01kq 15 10 sensitive sensitive JJ cord-010027-r0tl01kq 15 11 than than IN cord-010027-r0tl01kq 15 12 uroplakin uroplakin NNP cord-010027-r0tl01kq 15 13 III III NNP cord-010027-r0tl01kq 15 14 & & CC cord-010027-r0tl01kq 15 15 may may MD cord-010027-r0tl01kq 15 16 assist assist VB cord-010027-r0tl01kq 15 17 within within IN cord-010027-r0tl01kq 15 18 a a DT cord-010027-r0tl01kq 15 19 panel panel NN cord-010027-r0tl01kq 15 20 . . . cord-010027-r0tl01kq 16 1 Spindle spindle JJ cord-010027-r0tl01kq 16 2 cell cell NN cord-010027-r0tl01kq 16 3 lesions lesion NNS cord-010027-r0tl01kq 16 4 of of IN cord-010027-r0tl01kq 16 5 the the DT cord-010027-r0tl01kq 16 6 bladder bladder NN cord-010027-r0tl01kq 16 7 are be VBP cord-010027-r0tl01kq 16 8 often often RB cord-010027-r0tl01kq 16 9 difficult difficult JJ cord-010027-r0tl01kq 16 10 & & CC cord-010027-r0tl01kq 16 11 loss loss NN cord-010027-r0tl01kq 16 12 of of IN cord-010027-r0tl01kq 16 13 cytokeratin cytokeratin NNP cord-010027-r0tl01kq 16 14 expression expression NN cord-010027-r0tl01kq 16 15 is be VBZ cord-010027-r0tl01kq 16 16 common common JJ cord-010027-r0tl01kq 16 17 in in IN cord-010027-r0tl01kq 16 18 sarcomatoid sarcomatoid JJ cord-010027-r0tl01kq 16 19 carcinoma carcinoma NN cord-010027-r0tl01kq 16 20 . . . cord-010027-r0tl01kq 17 1 There there EX cord-010027-r0tl01kq 17 2 is be VBZ cord-010027-r0tl01kq 17 3 potential potential JJ cord-010027-r0tl01kq 17 4 to to TO cord-010027-r0tl01kq 17 5 mistake mistake VB cord-010027-r0tl01kq 17 6 inflammatory inflammatory JJ cord-010027-r0tl01kq 17 7 myofibroblastic myofibroblastic JJ cord-010027-r0tl01kq 17 8 tumour tumour NN cord-010027-r0tl01kq 17 9 for for IN cord-010027-r0tl01kq 17 10 a a DT cord-010027-r0tl01kq 17 11 malignant malignant JJ cord-010027-r0tl01kq 17 12 tumour tumour NN cord-010027-r0tl01kq 17 13 . . . cord-010027-r0tl01kq 18 1 Two two CD cord-010027-r0tl01kq 18 2 molecular molecular JJ cord-010027-r0tl01kq 18 3 pathways pathway NNS cord-010027-r0tl01kq 18 4 for for IN cord-010027-r0tl01kq 18 5 bladder bladder NN cord-010027-r0tl01kq 18 6 cancer cancer NN cord-010027-r0tl01kq 18 7 are be VBP cord-010027-r0tl01kq 18 8 recognised recognise VBN cord-010027-r0tl01kq 18 9 . . . cord-010027-r0tl01kq 19 1 FGFR3 fgfr3 XX cord-010027-r0tl01kq 20 1 at at IN cord-010027-r0tl01kq 20 2 4p16 4p16 CD cord-010027-r0tl01kq 20 3 is be VBZ cord-010027-r0tl01kq 20 4 the the DT cord-010027-r0tl01kq 20 5 most most RBS cord-010027-r0tl01kq 20 6 frequently frequently RB cord-010027-r0tl01kq 20 7 mutated mutate VBN cord-010027-r0tl01kq 20 8 oncogene oncogene NN cord-010027-r0tl01kq 20 9 in in IN cord-010027-r0tl01kq 20 10 bladder bladder NN cord-010027-r0tl01kq 20 11 cancer cancer NN cord-010027-r0tl01kq 20 12 & & CC cord-010027-r0tl01kq 20 13 is be VBZ cord-010027-r0tl01kq 20 14 prevalent prevalent JJ cord-010027-r0tl01kq 20 15 in in IN cord-010027-r0tl01kq 20 16 low low JJ cord-010027-r0tl01kq 20 17 grade grade NN cord-010027-r0tl01kq 20 18 papillary papillary JJ cord-010027-r0tl01kq 20 19 tumours tumour NNS cord-010027-r0tl01kq 20 20 . . . cord-010027-r0tl01kq 21 1 p53 p53 NN cord-010027-r0tl01kq 21 2 loss loss NN cord-010027-r0tl01kq 21 3 of of IN cord-010027-r0tl01kq 21 4 function function NN cord-010027-r0tl01kq 21 5 mutations mutation NNS cord-010027-r0tl01kq 21 6 and and CC cord-010027-r0tl01kq 21 7 loss loss NN cord-010027-r0tl01kq 21 8 of of IN cord-010027-r0tl01kq 21 9 RB1 RB1 NNP cord-010027-r0tl01kq 21 10 are be VBP cord-010027-r0tl01kq 21 11 prevalent prevalent JJ cord-010027-r0tl01kq 21 12 in in IN cord-010027-r0tl01kq 21 13 CIS CIS NNP cord-010027-r0tl01kq 21 14 . . . cord-010027-r0tl01kq 22 1 No no DT cord-010027-r0tl01kq 22 2 prognostic prognostic JJ cord-010027-r0tl01kq 22 3 molecular molecular JJ cord-010027-r0tl01kq 22 4 test test NN cord-010027-r0tl01kq 22 5 is be VBZ cord-010027-r0tl01kq 22 6 currently currently RB cord-010027-r0tl01kq 22 7 validated validate VBN cord-010027-r0tl01kq 22 8 for for IN cord-010027-r0tl01kq 22 9 clinical clinical JJ cord-010027-r0tl01kq 22 10 use use NN cord-010027-r0tl01kq 22 11 in in IN cord-010027-r0tl01kq 22 12 bladder bladder NN cord-010027-r0tl01kq 22 13 cancer cancer NN cord-010027-r0tl01kq 22 14 , , , cord-010027-r0tl01kq 22 15 though though IN cord-010027-r0tl01kq 22 16 some some DT cord-010027-r0tl01kq 22 17 ( ( -LRB- cord-010027-r0tl01kq 22 18 e.g. e.g. IN cord-010027-r0tl01kq 22 19 FISH fish NN cord-010027-r0tl01kq 22 20 ) ) -RRB- cord-010027-r0tl01kq 22 21 are be VBP cord-010027-r0tl01kq 22 22 in in IN cord-010027-r0tl01kq 22 23 use use NN cord-010027-r0tl01kq 22 24 as as IN cord-010027-r0tl01kq 22 25 an an DT cord-010027-r0tl01kq 22 26 adjunct adjunct NN cord-010027-r0tl01kq 22 27 in in IN cord-010027-r0tl01kq 22 28 diagnosis diagnosis NN cord-010027-r0tl01kq 22 29 . . . cord-010027-r0tl01kq 23 1 Indiana Indiana NNP cord-010027-r0tl01kq 23 2 University University NNP cord-010027-r0tl01kq 23 3 School School NNP cord-010027-r0tl01kq 23 4 of of IN cord-010027-r0tl01kq 23 5 Medicine Medicine NNP cord-010027-r0tl01kq 23 6 , , , cord-010027-r0tl01kq 23 7 Indianapolis Indianapolis NNP cord-010027-r0tl01kq 23 8 , , , cord-010027-r0tl01kq 23 9 USA USA NNP cord-010027-r0tl01kq 24 1 Some some DT cord-010027-r0tl01kq 24 2 dogmas dogma NNS cord-010027-r0tl01kq 24 3 in in IN cord-010027-r0tl01kq 24 4 testicular testicular NN cord-010027-r0tl01kq 24 5 pathology pathology NN cord-010027-r0tl01kq 24 6 do do VBP cord-010027-r0tl01kq 24 7 not not RB cord-010027-r0tl01kq 24 8 hold hold VB cord-010027-r0tl01kq 24 9 up up RP cord-010027-r0tl01kq 24 10 to to IN cord-010027-r0tl01kq 24 11 scrutiny scrutiny NN cord-010027-r0tl01kq 24 12 . . . cord-010027-r0tl01kq 25 1 The the DT cord-010027-r0tl01kq 25 2 belief belief NN cord-010027-r0tl01kq 25 3 that that IN cord-010027-r0tl01kq 25 4 all all DT cord-010027-r0tl01kq 25 5 pure pure JJ cord-010027-r0tl01kq 25 6 , , , cord-010027-r0tl01kq 25 7 postpubertal postpubertal NNP cord-010027-r0tl01kq 25 8 teratomas teratoma NNS cord-010027-r0tl01kq 25 9 are be VBP cord-010027-r0tl01kq 25 10 malignant malignant JJ cord-010027-r0tl01kq 25 11 is be VBZ cord-010027-r0tl01kq 25 12 invalid invalid JJ cord-010027-r0tl01kq 25 13 . . . cord-010027-r0tl01kq 26 1 Within within IN cord-010027-r0tl01kq 26 2 this this DT cord-010027-r0tl01kq 26 3 group group NN cord-010027-r0tl01kq 26 4 there there EX cord-010027-r0tl01kq 26 5 is be VBZ cord-010027-r0tl01kq 26 6 a a DT cord-010027-r0tl01kq 26 7 small small JJ cord-010027-r0tl01kq 26 8 subset subset NN cord-010027-r0tl01kq 26 9 that that WDT cord-010027-r0tl01kq 26 10 is be VBZ cord-010027-r0tl01kq 26 11 benign benign JJ cord-010027-r0tl01kq 26 12 ; ; : cord-010027-r0tl01kq 26 13 these these DT cord-010027-r0tl01kq 26 14 may may MD cord-010027-r0tl01kq 26 15 be be VB cord-010027-r0tl01kq 26 16 divided divide VBN cord-010027-r0tl01kq 26 17 into into IN cord-010027-r0tl01kq 26 18 dermoid dermoid JJ cord-010027-r0tl01kq 26 19 and and CC cord-010027-r0tl01kq 26 20 non non JJ cord-010027-r0tl01kq 26 21 - - JJ cord-010027-r0tl01kq 26 22 dermoid dermoid JJ cord-010027-r0tl01kq 26 23 types type NNS cord-010027-r0tl01kq 26 24 that that WDT cord-010027-r0tl01kq 26 25 , , , cord-010027-r0tl01kq 26 26 however however RB cord-010027-r0tl01kq 26 27 , , , cord-010027-r0tl01kq 26 28 share share NN cord-010027-r0tl01kq 26 29 features feature NNS cord-010027-r0tl01kq 26 30 that that WDT cord-010027-r0tl01kq 26 31 distinguish distinguish VBP cord-010027-r0tl01kq 26 32 them -PRON- PRP cord-010027-r0tl01kq 26 33 from from IN cord-010027-r0tl01kq 26 34 the the DT cord-010027-r0tl01kq 26 35 usual usual JJ cord-010027-r0tl01kq 26 36 teratoma teratoma NN cord-010027-r0tl01kq 26 37 of of IN cord-010027-r0tl01kq 26 38 adults adult NNS cord-010027-r0tl01kq 26 39 . . . cord-010027-r0tl01kq 27 1 These these DT cord-010027-r0tl01kq 27 2 include include VBP cord-010027-r0tl01kq 27 3 absence absence NN cord-010027-r0tl01kq 27 4 of of IN cord-010027-r0tl01kq 27 5 : : : cord-010027-r0tl01kq 27 6 atypia atypia NN cord-010027-r0tl01kq 27 7 , , , cord-010027-r0tl01kq 27 8 regressive regressive JJ cord-010027-r0tl01kq 27 9 parenchymal parenchymal NN cord-010027-r0tl01kq 27 10 changes change NNS cord-010027-r0tl01kq 27 11 , , , cord-010027-r0tl01kq 27 12 intratubular intratubular JJ cord-010027-r0tl01kq 27 13 germ germ NN cord-010027-r0tl01kq 27 14 cell cell NN cord-010027-r0tl01kq 27 15 neoplasia neoplasia NN cord-010027-r0tl01kq 27 16 , , , cord-010027-r0tl01kq 27 17 and and CC cord-010027-r0tl01kq 27 18 i(12p i(12p LS cord-010027-r0tl01kq 27 19 ) ) -RRB- cord-010027-r0tl01kq 27 20 . . . cord-010027-r0tl01kq 28 1 Also also RB cord-010027-r0tl01kq 28 2 they -PRON- PRP cord-010027-r0tl01kq 28 3 usually usually RB cord-010027-r0tl01kq 28 4 show show VBP cord-010027-r0tl01kq 28 5 organoid organoid JJ cord-010027-r0tl01kq 28 6 arrangements arrangement NNS cord-010027-r0tl01kq 28 7 , , , cord-010027-r0tl01kq 28 8 and and CC cord-010027-r0tl01kq 28 9 prominence prominence NN cord-010027-r0tl01kq 28 10 of of IN cord-010027-r0tl01kq 28 11 ciliated ciliated JJ cord-010027-r0tl01kq 28 12 epithelium epithelium NN cord-010027-r0tl01kq 28 13 , , , cord-010027-r0tl01kq 28 14 squamous squamous JJ cord-010027-r0tl01kq 28 15 cysts cyst NNS cord-010027-r0tl01kq 28 16 and and CC cord-010027-r0tl01kq 28 17 smooth smooth JJ cord-010027-r0tl01kq 28 18 muscle muscle NN cord-010027-r0tl01kq 28 19 . . . cord-010027-r0tl01kq 29 1 Patients patient NNS cord-010027-r0tl01kq 29 2 do do VBP cord-010027-r0tl01kq 29 3 not not RB cord-010027-r0tl01kq 29 4 need need VB cord-010027-r0tl01kq 29 5 further further JJ cord-010027-r0tl01kq 29 6 intervention intervention NN cord-010027-r0tl01kq 29 7 beyond beyond IN cord-010027-r0tl01kq 29 8 excision excision NN cord-010027-r0tl01kq 29 9 sufficient sufficient JJ cord-010027-r0tl01kq 29 10 to to TO cord-010027-r0tl01kq 29 11 establish establish VB cord-010027-r0tl01kq 29 12 the the DT cord-010027-r0tl01kq 29 13 diagnosis diagnosis NN cord-010027-r0tl01kq 29 14 . . . cord-010027-r0tl01kq 30 1 Cases case NNS cord-010027-r0tl01kq 30 2 often often RB cord-010027-r0tl01kq 30 3 interpreted interpret VBD cord-010027-r0tl01kq 30 4 as as IN cord-010027-r0tl01kq 30 5 isolated isolate VBN cord-010027-r0tl01kq 30 6 testicular testicular JJ cord-010027-r0tl01kq 30 7 polyarteritis polyarteritis NN cord-010027-r0tl01kq 30 8 nodosa nodosa RB cord-010027-r0tl01kq 30 9 because because IN cord-010027-r0tl01kq 30 10 of of IN cord-010027-r0tl01kq 30 11 the the DT cord-010027-r0tl01kq 30 12 presence presence NN cord-010027-r0tl01kq 30 13 of of IN cord-010027-r0tl01kq 30 14 fibrinoid fibrinoid JJ cord-010027-r0tl01kq 30 15 vascular vascular JJ cord-010027-r0tl01kq 30 16 necrosis necrosis NN cord-010027-r0tl01kq 30 17 are be VBP cord-010027-r0tl01kq 30 18 mostly mostly RB cord-010027-r0tl01kq 30 19 attributable attributable JJ cord-010027-r0tl01kq 30 20 to to IN cord-010027-r0tl01kq 30 21 chronic chronic JJ cord-010027-r0tl01kq 30 22 , , , cord-010027-r0tl01kq 30 23 intermittent intermittent JJ cord-010027-r0tl01kq 30 24 torsion torsion NN cord-010027-r0tl01kq 30 25 . . . cord-010027-r0tl01kq 31 1 They -PRON- PRP cord-010027-r0tl01kq 31 2 usually usually RB cord-010027-r0tl01kq 31 3 present present VBP cord-010027-r0tl01kq 31 4 as as IN cord-010027-r0tl01kq 31 5 pain pain NN cord-010027-r0tl01kq 31 6 - - HYPH cord-010027-r0tl01kq 31 7 associated associate VBN cord-010027-r0tl01kq 31 8 , , , cord-010027-r0tl01kq 31 9 palpable palpable JJ cord-010027-r0tl01kq 31 10 or or CC cord-010027-r0tl01kq 31 11 ultrasound ultrasound NN cord-010027-r0tl01kq 31 12 - - HYPH cord-010027-r0tl01kq 31 13 detected detect VBN cord-010027-r0tl01kq 31 14 masses masse NNS cord-010027-r0tl01kq 31 15 , , , cord-010027-r0tl01kq 31 16 with with IN cord-010027-r0tl01kq 31 17 the the DT cord-010027-r0tl01kq 31 18 " " `` cord-010027-r0tl01kq 31 19 mass mass NN cord-010027-r0tl01kq 31 20 " " '' cord-010027-r0tl01kq 31 21 corresponding correspond VBG cord-010027-r0tl01kq 31 22 to to IN cord-010027-r0tl01kq 31 23 infarct infarct NN cord-010027-r0tl01kq 31 24 and/or and/or CC cord-010027-r0tl01kq 31 25 hemorrhage hemorrhage NN cord-010027-r0tl01kq 31 26 . . . cord-010027-r0tl01kq 32 1 There there EX cord-010027-r0tl01kq 32 2 are be VBP cord-010027-r0tl01kq 32 3 associated associate VBN cord-010027-r0tl01kq 32 4 chronic chronic JJ cord-010027-r0tl01kq 32 5 vascular vascular JJ cord-010027-r0tl01kq 32 6 changes change NNS cord-010027-r0tl01kq 32 7 , , , cord-010027-r0tl01kq 32 8 with with IN cord-010027-r0tl01kq 32 9 frequent frequent JJ cord-010027-r0tl01kq 32 10 marked marked JJ cord-010027-r0tl01kq 32 11 intimal intimal JJ cord-010027-r0tl01kq 32 12 hyperplasia hyperplasia NN cord-010027-r0tl01kq 32 13 of of IN cord-010027-r0tl01kq 32 14 arteries artery NNS cord-010027-r0tl01kq 32 15 , , , cord-010027-r0tl01kq 32 16 mural mural NN cord-010027-r0tl01kq 32 17 fibrosis fibrosis NN cord-010027-r0tl01kq 32 18 of of IN cord-010027-r0tl01kq 32 19 veins vein NNS cord-010027-r0tl01kq 32 20 , , , cord-010027-r0tl01kq 32 21 dilated dilated JJ cord-010027-r0tl01kq 32 22 venules venule NNS cord-010027-r0tl01kq 32 23 and and CC cord-010027-r0tl01kq 32 24 arteriolar arteriolar JJ cord-010027-r0tl01kq 32 25 hyalinization hyalinization NN cord-010027-r0tl01kq 32 26 , , , cord-010027-r0tl01kq 32 27 consistent consistent JJ cord-010027-r0tl01kq 32 28 with with IN cord-010027-r0tl01kq 32 29 torsion torsion NN cord-010027-r0tl01kq 32 30 - - HYPH cord-010027-r0tl01kq 32 31 induced induce VBN cord-010027-r0tl01kq 32 32 venous venous JJ cord-010027-r0tl01kq 32 33 outflow outflow JJ cord-010027-r0tl01kq 32 34 obstruction obstruction NN cord-010027-r0tl01kq 32 35 and and CC cord-010027-r0tl01kq 32 36 secondary secondary JJ cord-010027-r0tl01kq 32 37 arterial arterial JJ cord-010027-r0tl01kq 32 38 hypertension hypertension NN cord-010027-r0tl01kq 32 39 . . . cord-010027-r0tl01kq 33 1 These these DT cord-010027-r0tl01kq 33 2 patients patient NNS cord-010027-r0tl01kq 33 3 do do VBP cord-010027-r0tl01kq 33 4 not not RB cord-010027-r0tl01kq 33 5 develop develop VB cord-010027-r0tl01kq 33 6 systemic systemic JJ cord-010027-r0tl01kq 33 7 vasculitis vasculitis NN cord-010027-r0tl01kq 33 8 on on IN cord-010027-r0tl01kq 33 9 follow follow NN cord-010027-r0tl01kq 33 10 - - HYPH cord-010027-r0tl01kq 33 11 up up NN cord-010027-r0tl01kq 33 12 . . . cord-010027-r0tl01kq 34 1 Many many JJ cord-010027-r0tl01kq 34 2 " " `` cord-010027-r0tl01kq 34 3 sarcomas sarcoma NNS cord-010027-r0tl01kq 34 4 " " '' cord-010027-r0tl01kq 34 5 in in IN cord-010027-r0tl01kq 34 6 patients patient NNS cord-010027-r0tl01kq 34 7 with with IN cord-010027-r0tl01kq 34 8 germ germ NN cord-010027-r0tl01kq 34 9 cell cell NN cord-010027-r0tl01kq 34 10 tumours tumour NNS cord-010027-r0tl01kq 34 11 , , , cord-010027-r0tl01kq 34 12 especially especially RB cord-010027-r0tl01kq 34 13 after after IN cord-010027-r0tl01kq 34 14 chemotherapy chemotherapy NN cord-010027-r0tl01kq 34 15 , , , cord-010027-r0tl01kq 34 16 are be VBP cord-010027-r0tl01kq 34 17 more more RBR cord-010027-r0tl01kq 34 18 correctly correctly RB cord-010027-r0tl01kq 34 19 regarded regard VBN cord-010027-r0tl01kq 34 20 as as IN cord-010027-r0tl01kq 34 21 sarcomatoid sarcomatoid NNP cord-010027-r0tl01kq 34 22 yolk yolk NN cord-010027-r0tl01kq 34 23 sac sac NN cord-010027-r0tl01kq 34 24 tumours tumour NNS cord-010027-r0tl01kq 34 25 . . . cord-010027-r0tl01kq 35 1 They -PRON- PRP cord-010027-r0tl01kq 35 2 are be VBP cord-010027-r0tl01kq 35 3 reactive reactive JJ cord-010027-r0tl01kq 35 4 for for IN cord-010027-r0tl01kq 35 5 cytokeratin cytokeratin NNP cord-010027-r0tl01kq 35 6 and and CC cord-010027-r0tl01kq 35 7 glypican glypican NNP cord-010027-r0tl01kq 35 8 3 3 CD cord-010027-r0tl01kq 35 9 . . . cord-010027-r0tl01kq 36 1 They -PRON- PRP cord-010027-r0tl01kq 36 2 often often RB cord-010027-r0tl01kq 36 3 show show VBP cord-010027-r0tl01kq 36 4 characteristic characteristic JJ cord-010027-r0tl01kq 36 5 features feature NNS cord-010027-r0tl01kq 36 6 : : : cord-010027-r0tl01kq 36 7 nodular nodular JJ cord-010027-r0tl01kq 36 8 growth growth NN cord-010027-r0tl01kq 36 9 , , , cord-010027-r0tl01kq 36 10 myxoid myxoid NN cord-010027-r0tl01kq 36 11 and and CC cord-010027-r0tl01kq 36 12 fibrous fibrous JJ cord-010027-r0tl01kq 36 13 stroma stroma NN cord-010027-r0tl01kq 36 14 , , , cord-010027-r0tl01kq 36 15 spindled spindled JJ cord-010027-r0tl01kq 36 16 and and CC cord-010027-r0tl01kq 36 17 epithelioid epithelioid NN cord-010027-r0tl01kq 36 18 cells cell NNS cord-010027-r0tl01kq 36 19 , , , cord-010027-r0tl01kq 36 20 abrupt abrupt JJ cord-010027-r0tl01kq 36 21 changes change NNS cord-010027-r0tl01kq 36 22 in in IN cord-010027-r0tl01kq 36 23 cellularity cellularity NN cord-010027-r0tl01kq 36 24 , , , cord-010027-r0tl01kq 36 25 and and CC cord-010027-r0tl01kq 36 26 tumor tumor NN cord-010027-r0tl01kq 36 27 " " '' cord-010027-r0tl01kq 36 28 ringlets ringlet NNS cord-010027-r0tl01kq 36 29 . . . cord-010027-r0tl01kq 37 1 " " `` cord-010027-r0tl01kq 37 2 Most Most JJS cord-010027-r0tl01kq 37 3 are be VBP cord-010027-r0tl01kq 37 4 high high JJ cord-010027-r0tl01kq 37 5 grade grade NN cord-010027-r0tl01kq 37 6 and and CC cord-010027-r0tl01kq 37 7 aggressive aggressive JJ cord-010027-r0tl01kq 37 8 . . . cord-010027-r0tl01kq 38 1 Most most RBS cord-010027-r0tl01kq 38 2 regressed regress VBN cord-010027-r0tl01kq 38 3 germ germ NN cord-010027-r0tl01kq 38 4 cell cell NN cord-010027-r0tl01kq 38 5 tumours tumour NNS cord-010027-r0tl01kq 38 6 can can MD cord-010027-r0tl01kq 38 7 be be VB cord-010027-r0tl01kq 38 8 recognized recognize VBN cord-010027-r0tl01kq 38 9 through through IN cord-010027-r0tl01kq 38 10 a a DT cord-010027-r0tl01kq 38 11 combination combination NN cord-010027-r0tl01kq 38 12 of of IN cord-010027-r0tl01kq 38 13 findings finding NNS cord-010027-r0tl01kq 38 14 , , , cord-010027-r0tl01kq 38 15 although although IN cord-010027-r0tl01kq 38 16 the the DT cord-010027-r0tl01kq 38 17 only only JJ cord-010027-r0tl01kq 38 18 diagnostic diagnostic JJ cord-010027-r0tl01kq 38 19 ones one NNS cord-010027-r0tl01kq 38 20 are be VBP cord-010027-r0tl01kq 38 21 a a DT cord-010027-r0tl01kq 38 22 scar scar NN cord-010027-r0tl01kq 38 23 with with IN cord-010027-r0tl01kq 38 24 coarse coarse JJ cord-010027-r0tl01kq 38 25 intratubular intratubular JJ cord-010027-r0tl01kq 38 26 calcifications calcification NNS cord-010027-r0tl01kq 38 27 or or CC cord-010027-r0tl01kq 38 28 with with IN cord-010027-r0tl01kq 38 29 intratubular intratubular JJ cord-010027-r0tl01kq 38 30 germ germ NN cord-010027-r0tl01kq 38 31 cell cell NN cord-010027-r0tl01kq 38 32 neoplasia neoplasia NN cord-010027-r0tl01kq 38 33 . . . cord-010027-r0tl01kq 39 1 Alcohol alcohol NN cord-010027-r0tl01kq 39 2 consumption consumption NN cord-010027-r0tl01kq 39 3 has have VBZ cord-010027-r0tl01kq 39 4 doubled double VBN cord-010027-r0tl01kq 39 5 in in IN cord-010027-r0tl01kq 39 6 Ireland Ireland NNP cord-010027-r0tl01kq 39 7 and and CC cord-010027-r0tl01kq 39 8 the the DT cord-010027-r0tl01kq 39 9 UK UK NNP cord-010027-r0tl01kq 39 10 in in IN cord-010027-r0tl01kq 39 11 the the DT cord-010027-r0tl01kq 39 12 last last JJ cord-010027-r0tl01kq 39 13 60 60 CD cord-010027-r0tl01kq 39 14 years year NNS cord-010027-r0tl01kq 39 15 . . . cord-010027-r0tl01kq 40 1 The the DT cord-010027-r0tl01kq 40 2 causes cause NNS cord-010027-r0tl01kq 40 3 of of IN cord-010027-r0tl01kq 40 4 this this DT cord-010027-r0tl01kq 40 5 increase increase NN cord-010027-r0tl01kq 40 6 include include VBP cord-010027-r0tl01kq 40 7 increased increase VBN cord-010027-r0tl01kq 40 8 affordability affordability NN cord-010027-r0tl01kq 40 9 of of IN cord-010027-r0tl01kq 40 10 alcohol alcohol NN cord-010027-r0tl01kq 40 11 and and CC cord-010027-r0tl01kq 40 12 its -PRON- PRP$ cord-010027-r0tl01kq 40 13 widespread widespread JJ cord-010027-r0tl01kq 40 14 availability availability NN cord-010027-r0tl01kq 40 15 . . . cord-010027-r0tl01kq 41 1 As as IN cord-010027-r0tl01kq 41 2 a a DT cord-010027-r0tl01kq 41 3 consequence consequence NN cord-010027-r0tl01kq 41 4 , , , cord-010027-r0tl01kq 41 5 the the DT cord-010027-r0tl01kq 41 6 health health NN cord-010027-r0tl01kq 41 7 harms harm VBZ cord-010027-r0tl01kq 41 8 associated associate VBN cord-010027-r0tl01kq 41 9 with with IN cord-010027-r0tl01kq 41 10 alcohol alcohol NN cord-010027-r0tl01kq 41 11 have have VBP cord-010027-r0tl01kq 41 12 dramatically dramatically RB cord-010027-r0tl01kq 41 13 increased increase VBN cord-010027-r0tl01kq 41 14 . . . cord-010027-r0tl01kq 42 1 Binge binge NN cord-010027-r0tl01kq 42 2 drinking drinking NN cord-010027-r0tl01kq 42 3 and and CC cord-010027-r0tl01kq 42 4 alcohol alcohol NN cord-010027-r0tl01kq 42 5 consumption consumption NN cord-010027-r0tl01kq 42 6 among among IN cord-010027-r0tl01kq 42 7 by by IN cord-010027-r0tl01kq 42 8 women woman NNS cord-010027-r0tl01kq 42 9 have have VBP cord-010027-r0tl01kq 42 10 risen rise VBN cord-010027-r0tl01kq 42 11 especially especially RB cord-010027-r0tl01kq 42 12 dramatically dramatically RB cord-010027-r0tl01kq 42 13 . . . cord-010027-r0tl01kq 43 1 For for IN cord-010027-r0tl01kq 43 2 example example NN cord-010027-r0tl01kq 43 3 , , , cord-010027-r0tl01kq 43 4 the the DT cord-010027-r0tl01kq 43 5 mortality mortality NN cord-010027-r0tl01kq 43 6 from from IN cord-010027-r0tl01kq 43 7 cirrhosis cirrhosis NN cord-010027-r0tl01kq 43 8 has have VBZ cord-010027-r0tl01kq 43 9 doubled double VBN cord-010027-r0tl01kq 43 10 in in IN cord-010027-r0tl01kq 43 11 the the DT cord-010027-r0tl01kq 43 12 last last JJ cord-010027-r0tl01kq 43 13 20 20 CD cord-010027-r0tl01kq 43 14 years year NNS cord-010027-r0tl01kq 43 15 in in IN cord-010027-r0tl01kq 43 16 both both DT cord-010027-r0tl01kq 43 17 men man NNS cord-010027-r0tl01kq 43 18 and and CC cord-010027-r0tl01kq 43 19 women woman NNS cord-010027-r0tl01kq 43 20 . . . cord-010027-r0tl01kq 44 1 In in IN cord-010027-r0tl01kq 44 2 response response NN cord-010027-r0tl01kq 44 3 to to IN cord-010027-r0tl01kq 44 4 this this DT cord-010027-r0tl01kq 44 5 , , , cord-010027-r0tl01kq 44 6 the the DT cord-010027-r0tl01kq 44 7 medical medical JJ cord-010027-r0tl01kq 44 8 profession profession NN cord-010027-r0tl01kq 44 9 on on IN cord-010027-r0tl01kq 44 10 both both DT cord-010027-r0tl01kq 44 11 islands island NNS cord-010027-r0tl01kq 44 12 have have VBP cord-010027-r0tl01kq 44 13 led lead VBN cord-010027-r0tl01kq 44 14 informal informal JJ cord-010027-r0tl01kq 44 15 and and CC cord-010027-r0tl01kq 44 16 later later JJ cord-010027-r0tl01kq 44 17 formal formal JJ cord-010027-r0tl01kq 44 18 campaigns campaign NNS cord-010027-r0tl01kq 44 19 to to TO cord-010027-r0tl01kq 44 20 encourage encourage VB cord-010027-r0tl01kq 44 21 policy policy NN cord-010027-r0tl01kq 44 22 change change NN cord-010027-r0tl01kq 44 23 regarding regard VBG cord-010027-r0tl01kq 44 24 alcohol alcohol NN cord-010027-r0tl01kq 44 25 at at IN cord-010027-r0tl01kq 44 26 a a DT cord-010027-r0tl01kq 44 27 national national JJ cord-010027-r0tl01kq 44 28 level level NN cord-010027-r0tl01kq 44 29 . . . cord-010027-r0tl01kq 45 1 In in IN cord-010027-r0tl01kq 45 2 Ireland Ireland NNP cord-010027-r0tl01kq 45 3 , , , cord-010027-r0tl01kq 45 4 this this DT cord-010027-r0tl01kq 45 5 was be VBD cord-010027-r0tl01kq 45 6 driven drive VBN cord-010027-r0tl01kq 45 7 by by IN cord-010027-r0tl01kq 45 8 RCPI RCPI NNP cord-010027-r0tl01kq 45 9 . . . cord-010027-r0tl01kq 46 1 The the DT cord-010027-r0tl01kq 46 2 involvement involvement NN cord-010027-r0tl01kq 46 3 of of IN cord-010027-r0tl01kq 46 4 the the DT cord-010027-r0tl01kq 46 5 medical medical JJ cord-010027-r0tl01kq 46 6 profession profession NN cord-010027-r0tl01kq 46 7 has have VBZ cord-010027-r0tl01kq 46 8 had have VBN cord-010027-r0tl01kq 46 9 a a DT cord-010027-r0tl01kq 46 10 powerful powerful JJ cord-010027-r0tl01kq 46 11 influence influence NN cord-010027-r0tl01kq 46 12 , , , cord-010027-r0tl01kq 46 13 as as IN cord-010027-r0tl01kq 46 14 doctors doctor NNS cord-010027-r0tl01kq 46 15 do do VBP cord-010027-r0tl01kq 46 16 not not RB cord-010027-r0tl01kq 46 17 have have VB cord-010027-r0tl01kq 46 18 a a DT cord-010027-r0tl01kq 46 19 conflict conflict NN cord-010027-r0tl01kq 46 20 of of IN cord-010027-r0tl01kq 46 21 interest interest NN cord-010027-r0tl01kq 46 22 in in IN cord-010027-r0tl01kq 46 23 this this DT cord-010027-r0tl01kq 46 24 matter matter NN cord-010027-r0tl01kq 46 25 , , , cord-010027-r0tl01kq 46 26 in in IN cord-010027-r0tl01kq 46 27 contrast contrast NN cord-010027-r0tl01kq 46 28 to to IN cord-010027-r0tl01kq 46 29 the the DT cord-010027-r0tl01kq 46 30 alcohol alcohol NN cord-010027-r0tl01kq 46 31 industry industry NN cord-010027-r0tl01kq 46 32 . . . cord-010027-r0tl01kq 47 1 The the DT cord-010027-r0tl01kq 47 2 policy policy NN cord-010027-r0tl01kq 47 3 changes change NNS cord-010027-r0tl01kq 47 4 advocated advocate VBN cord-010027-r0tl01kq 47 5 include include VBP cord-010027-r0tl01kq 47 6 particularly particularly RB cord-010027-r0tl01kq 47 7 Minimum Minimum NNP cord-010027-r0tl01kq 47 8 Unit Unit NNP cord-010027-r0tl01kq 47 9 Pricing Pricing NNP cord-010027-r0tl01kq 47 10 ( ( -LRB- cord-010027-r0tl01kq 47 11 MUP MUP NNP cord-010027-r0tl01kq 47 12 ) ) -RRB- cord-010027-r0tl01kq 47 13 , , , cord-010027-r0tl01kq 47 14 which which WDT cord-010027-r0tl01kq 47 15 has have VBZ cord-010027-r0tl01kq 47 16 been be VBN cord-010027-r0tl01kq 47 17 shown show VBN cord-010027-r0tl01kq 47 18 to to TO cord-010027-r0tl01kq 47 19 be be VB cord-010027-r0tl01kq 47 20 effective effective JJ cord-010027-r0tl01kq 47 21 in in IN cord-010027-r0tl01kq 47 22 reducing reduce VBG cord-010027-r0tl01kq 47 23 alcohol alcohol NN cord-010027-r0tl01kq 47 24 consumption consumption NN cord-010027-r0tl01kq 47 25 , , , cord-010027-r0tl01kq 47 26 alcohol alcohol NN cord-010027-r0tl01kq 47 27 - - HYPH cord-010027-r0tl01kq 47 28 related relate VBN cord-010027-r0tl01kq 47 29 admission admission NN cord-010027-r0tl01kq 47 30 to to IN cord-010027-r0tl01kq 47 31 hospital hospital NN cord-010027-r0tl01kq 47 32 and and CC cord-010027-r0tl01kq 47 33 crime crime NN cord-010027-r0tl01kq 47 34 in in IN cord-010027-r0tl01kq 47 35 Canada Canada NNP cord-010027-r0tl01kq 47 36 . . . cord-010027-r0tl01kq 48 1 Modelling modelling NN cord-010027-r0tl01kq 48 2 of of IN cord-010027-r0tl01kq 48 3 the the DT cord-010027-r0tl01kq 48 4 data data NN cord-010027-r0tl01kq 48 5 suggests suggest VBZ cord-010027-r0tl01kq 48 6 it -PRON- PRP cord-010027-r0tl01kq 48 7 would would MD cord-010027-r0tl01kq 48 8 have have VB cord-010027-r0tl01kq 48 9 similar similar JJ cord-010027-r0tl01kq 48 10 benefits benefit NNS cord-010027-r0tl01kq 48 11 in in IN cord-010027-r0tl01kq 48 12 UK UK NNP cord-010027-r0tl01kq 48 13 and and CC cord-010027-r0tl01kq 48 14 Ireland Ireland NNP cord-010027-r0tl01kq 48 15 . . . cord-010027-r0tl01kq 49 1 This this DT cord-010027-r0tl01kq 49 2 is be VBZ cord-010027-r0tl01kq 49 3 regarded regard VBN cord-010027-r0tl01kq 49 4 as as IN cord-010027-r0tl01kq 49 5 the the DT cord-010027-r0tl01kq 49 6 single single JJ cord-010027-r0tl01kq 49 7 most most RBS cord-010027-r0tl01kq 49 8 important important JJ cord-010027-r0tl01kq 49 9 first first JJ cord-010027-r0tl01kq 49 10 step step NN cord-010027-r0tl01kq 49 11 . . . cord-010027-r0tl01kq 50 1 Other other JJ cord-010027-r0tl01kq 50 2 steps step NNS cord-010027-r0tl01kq 50 3 which which WDT cord-010027-r0tl01kq 50 4 will will MD cord-010027-r0tl01kq 50 5 help help VB cord-010027-r0tl01kq 50 6 include include VB cord-010027-r0tl01kq 50 7 actions action NNS cord-010027-r0tl01kq 50 8 around around IN cord-010027-r0tl01kq 50 9 alcohol alcohol NN cord-010027-r0tl01kq 50 10 labelling labelling NN cord-010027-r0tl01kq 50 11 , , , cord-010027-r0tl01kq 50 12 availability availability NN cord-010027-r0tl01kq 50 13 and and CC cord-010027-r0tl01kq 50 14 breaking break VBG cord-010027-r0tl01kq 50 15 the the DT cord-010027-r0tl01kq 50 16 link link NN cord-010027-r0tl01kq 50 17 between between IN cord-010027-r0tl01kq 50 18 alcohol alcohol NN cord-010027-r0tl01kq 50 19 and and CC cord-010027-r0tl01kq 50 20 sports sport NNS cord-010027-r0tl01kq 50 21 and and CC cord-010027-r0tl01kq 50 22 leisure leisure NN cord-010027-r0tl01kq 50 23 promotion promotion NN cord-010027-r0tl01kq 50 24 . . . cord-010027-r0tl01kq 51 1 Turning turn VBG cord-010027-r0tl01kq 51 2 off off RP cord-010027-r0tl01kq 51 3 the the DT cord-010027-r0tl01kq 51 4 tap tap NN cord-010027-r0tl01kq 51 5 of of IN cord-010027-r0tl01kq 51 6 cheap cheap JJ cord-010027-r0tl01kq 51 7 alcohol alcohol NN cord-010027-r0tl01kq 51 8 will will MD cord-010027-r0tl01kq 51 9 hopefully hopefully RB cord-010027-r0tl01kq 51 10 soon soon RB cord-010027-r0tl01kq 51 11 reduce reduce VB cord-010027-r0tl01kq 51 12 alcohol alcohol NN cord-010027-r0tl01kq 51 13 health health NN cord-010027-r0tl01kq 51 14 harms harm NNS cord-010027-r0tl01kq 51 15 in in IN cord-010027-r0tl01kq 51 16 UK UK NNP cord-010027-r0tl01kq 51 17 and and CC cord-010027-r0tl01kq 51 18 Ireland Ireland NNP cord-010027-r0tl01kq 52 1   . cord-010027-r0tl01kq 53 1 Barrett Barrett NNP cord-010027-r0tl01kq 53 2 's 's POS cord-010027-r0tl01kq 53 3 Oesophagus Oesophagus NNP cord-010027-r0tl01kq 53 4 : : : cord-010027-r0tl01kq 54 1 An an DT cord-010027-r0tl01kq 54 2 Evolving evolve VBG cord-010027-r0tl01kq 54 3 Challenge challenge NN cord-010027-r0tl01kq 54 4 for for IN cord-010027-r0tl01kq 54 5 the the DT cord-010027-r0tl01kq 54 6 Gastroenterologist gastroenterologist NN cord-010027-r0tl01kq 54 7 P p NN cord-010027-r0tl01kq 54 8 DOT DOT NNP cord-010027-r0tl01kq 54 9 O'Toole O'Toole NNP cord-010027-r0tl01kq 54 10 Cost cost NN cord-010027-r0tl01kq 54 11 - - HYPH cord-010027-r0tl01kq 54 12 effective effective JJ cord-010027-r0tl01kq 54 13 surveillance surveillance NN cord-010027-r0tl01kq 54 14 programmes programme NNS cord-010027-r0tl01kq 54 15 for for IN cord-010027-r0tl01kq 54 16 Barrett Barrett NNP cord-010027-r0tl01kq 54 17 's 's POS cord-010027-r0tl01kq 54 18 oesophagus oesophagus NN cord-010027-r0tl01kq 54 19 ( ( -LRB- cord-010027-r0tl01kq 54 20 BO BO NNP cord-010027-r0tl01kq 54 21 ) ) -RRB- cord-010027-r0tl01kq 54 22 needs need VBZ cord-010027-r0tl01kq 54 23 to to TO cord-010027-r0tl01kq 54 24 be be VB cord-010027-r0tl01kq 54 25 focused focus VBN cord-010027-r0tl01kq 54 26 at at IN cord-010027-r0tl01kq 54 27 risk risk NN cord-010027-r0tl01kq 54 28 groups group NNS cord-010027-r0tl01kq 54 29 . . . cord-010027-r0tl01kq 55 1 It -PRON- PRP cord-010027-r0tl01kq 55 2 is be VBZ cord-010027-r0tl01kq 55 3 not not RB cord-010027-r0tl01kq 55 4 only only RB cord-010027-r0tl01kq 55 5 a a DT cord-010027-r0tl01kq 55 6 question question NN cord-010027-r0tl01kq 55 7 of of IN cord-010027-r0tl01kq 55 8 identifying identify VBG cord-010027-r0tl01kq 55 9 more more JJR cord-010027-r0tl01kq 55 10 individuals individual NNS cord-010027-r0tl01kq 55 11 with with IN cord-010027-r0tl01kq 55 12 BO BO NNP cord-010027-r0tl01kq 55 13 ( ( -LRB- cord-010027-r0tl01kq 55 14 initial initial JJ cord-010027-r0tl01kq 55 15 screening screening NN cord-010027-r0tl01kq 55 16 ) ) -RRB- cord-010027-r0tl01kq 55 17 but but CC cord-010027-r0tl01kq 55 18 screening screening NN cord-010027-r0tl01kq 55 19 and and CC cord-010027-r0tl01kq 55 20 subsequent subsequent JJ cord-010027-r0tl01kq 55 21 surveillance surveillance NN cord-010027-r0tl01kq 55 22 has have VBZ cord-010027-r0tl01kq 55 23 to to TO cord-010027-r0tl01kq 55 24 identify identify VB cord-010027-r0tl01kq 55 25 at at IN cord-010027-r0tl01kq 55 26 - - HYPH cord-010027-r0tl01kq 55 27 risk risk NN cord-010027-r0tl01kq 55 28 individuals individual NNS cord-010027-r0tl01kq 55 29 with with IN cord-010027-r0tl01kq 55 30 BO BO NNP cord-010027-r0tl01kq 55 31 who who WP cord-010027-r0tl01kq 55 32 can can MD cord-010027-r0tl01kq 55 33 benefit benefit VB cord-010027-r0tl01kq 55 34 most most JJS cord-010027-r0tl01kq 55 35 from from IN cord-010027-r0tl01kq 55 36 surveillance surveillance NN cord-010027-r0tl01kq 55 37 or or CC cord-010027-r0tl01kq 55 38 therapy therapy NN cord-010027-r0tl01kq 55 39 . . . cord-010027-r0tl01kq 56 1 Advances advance NNS cord-010027-r0tl01kq 56 2 in in IN cord-010027-r0tl01kq 56 3 endoscopic endoscopic NNS cord-010027-r0tl01kq 56 4 imaging imaging NN cord-010027-r0tl01kq 56 5 ( ( -LRB- cord-010027-r0tl01kq 56 6 high high JJ cord-010027-r0tl01kq 56 7 resolution resolution NN cord-010027-r0tl01kq 56 8 endoscopy endoscopy NN cord-010027-r0tl01kq 56 9 ( ( -LRB- cord-010027-r0tl01kq 56 10 [ [ -LRB- cord-010027-r0tl01kq 56 11 HRE HRE NNP cord-010027-r0tl01kq 56 12 ] ] -RRB- cord-010027-r0tl01kq 56 13 with with IN cord-010027-r0tl01kq 56 14 dye dye NN cord-010027-r0tl01kq 56 15 - - HYPH cord-010027-r0tl01kq 56 16 based base VBN cord-010027-r0tl01kq 56 17 chromoendoscopy chromoendoscopy NNP cord-010027-r0tl01kq 56 18 , , , cord-010027-r0tl01kq 56 19 electronic electronic JJ cord-010027-r0tl01kq 56 20 chromoendoscopy chromoendoscopy NNP cord-010027-r0tl01kq 56 21 , , , cord-010027-r0tl01kq 56 22 and and CC cord-010027-r0tl01kq 56 23 autofluorescence autofluorescence NNP cord-010027-r0tl01kq 56 24 , , , cord-010027-r0tl01kq 56 25 ... ... NFP cord-010027-r0tl01kq 56 26 ) ) -RRB- cord-010027-r0tl01kq 56 27 certainly certainly RB cord-010027-r0tl01kq 56 28 prove prove VBP cord-010027-r0tl01kq 56 29 beneficial beneficial JJ cord-010027-r0tl01kq 56 30 in in IN cord-010027-r0tl01kq 56 31 better well JJR cord-010027-r0tl01kq 56 32 detecting detect VBG cord-010027-r0tl01kq 56 33 dysplasia dysplasia NN cord-010027-r0tl01kq 56 34 within within IN cord-010027-r0tl01kq 56 35 known know VBN cord-010027-r0tl01kq 56 36 BO BO NNP cord-010027-r0tl01kq 56 37 and and CC cord-010027-r0tl01kq 56 38 can can MD cord-010027-r0tl01kq 56 39 guide guide VB cord-010027-r0tl01kq 56 40 sampling sampling NN cord-010027-r0tl01kq 56 41 and and CC cord-010027-r0tl01kq 56 42 subsequent subsequent JJ cord-010027-r0tl01kq 56 43 therapy therapy NN cord-010027-r0tl01kq 56 44 . . . cord-010027-r0tl01kq 57 1 Dysplasia dysplasia NN cord-010027-r0tl01kq 57 2 can can MD cord-010027-r0tl01kq 57 3 be be VB cord-010027-r0tl01kq 57 4 patchy patchy JJ cord-010027-r0tl01kq 57 5 and and CC cord-010027-r0tl01kq 57 6 easily easily RB cord-010027-r0tl01kq 57 7 missed miss VBN cord-010027-r0tl01kq 57 8 during during IN cord-010027-r0tl01kq 57 9 routine routine JJ cord-010027-r0tl01kq 57 10 biopsy biopsy NN cord-010027-r0tl01kq 57 11 sampling sampling NN cord-010027-r0tl01kq 57 12 of of IN cord-010027-r0tl01kq 57 13 BO BO NNP cord-010027-r0tl01kq 57 14 and and CC cord-010027-r0tl01kq 57 15 adequate adequate JJ cord-010027-r0tl01kq 57 16 training training NN cord-010027-r0tl01kq 57 17 with with IN cord-010027-r0tl01kq 57 18 high high JJ cord-010027-r0tl01kq 57 19 resolution resolution NN cord-010027-r0tl01kq 57 20 instruments instrument NNS cord-010027-r0tl01kq 57 21 is be VBZ cord-010027-r0tl01kq 57 22 needed need VBN cord-010027-r0tl01kq 57 23 to to TO cord-010027-r0tl01kq 57 24 increase increase VB cord-010027-r0tl01kq 57 25 detection detection NN cord-010027-r0tl01kq 57 26 rates rate NNS cord-010027-r0tl01kq 57 27 . . . cord-010027-r0tl01kq 58 1 Once once IN cord-010027-r0tl01kq 58 2 dysplasia dysplasia NN cord-010027-r0tl01kq 58 3 is be VBZ cord-010027-r0tl01kq 58 4 detected detect VBN cord-010027-r0tl01kq 58 5 , , , cord-010027-r0tl01kq 58 6 endoscopic endoscopic JJ cord-010027-r0tl01kq 58 7 ablation ablation NN cord-010027-r0tl01kq 58 8 is be VBZ cord-010027-r0tl01kq 58 9 recommended recommend VBN cord-010027-r0tl01kq 58 10 . . . cord-010027-r0tl01kq 59 1 Until until IN cord-010027-r0tl01kq 59 2 recently recently RB cord-010027-r0tl01kq 59 3 , , , cord-010027-r0tl01kq 59 4 the the DT cord-010027-r0tl01kq 59 5 standard standard JJ cord-010027-r0tl01kq 59 6 treatment treatment NN cord-010027-r0tl01kq 59 7 for for IN cord-010027-r0tl01kq 59 8 HGD HGD NNP cord-010027-r0tl01kq 59 9 was be VBD cord-010027-r0tl01kq 59 10 oesophagectomy oesophagectomy JJ cord-010027-r0tl01kq 59 11 but but CC cord-010027-r0tl01kq 59 12 endoscopic endoscopic JJ cord-010027-r0tl01kq 59 13 resection resection NN cord-010027-r0tl01kq 59 14 and and CC cord-010027-r0tl01kq 59 15 ablation ablation NN cord-010027-r0tl01kq 59 16 techniques technique NNS cord-010027-r0tl01kq 59 17 are be VBP cord-010027-r0tl01kq 59 18 now now RB cord-010027-r0tl01kq 59 19 available available JJ cord-010027-r0tl01kq 59 20 to to TO cord-010027-r0tl01kq 59 21 eradicate eradicate VB cord-010027-r0tl01kq 59 22 dysplasia dysplasia NN cord-010027-r0tl01kq 59 23 and and CC cord-010027-r0tl01kq 59 24 mucosal mucosal JJ cord-010027-r0tl01kq 59 25 adenocarcinomas adenocarcinoma NNS cord-010027-r0tl01kq 59 26 . . . cord-010027-r0tl01kq 60 1 Resecting resect VBG cord-010027-r0tl01kq 60 2 visible visible JJ cord-010027-r0tl01kq 60 3 lesions lesion NNS cord-010027-r0tl01kq 60 4 ( ( -LRB- cord-010027-r0tl01kq 60 5 using use VBG cord-010027-r0tl01kq 60 6 endoscopic endoscopic JJ cord-010027-r0tl01kq 60 7 mucosal mucosal JJ cord-010027-r0tl01kq 60 8 resection resection NN cord-010027-r0tl01kq 60 9 [ [ -LRB- cord-010027-r0tl01kq 60 10 EMR EMR NNP cord-010027-r0tl01kq 60 11 ] ] -RRB- cord-010027-r0tl01kq 60 12 or or CC cord-010027-r0tl01kq 60 13 endoscopic endoscopic JJ cord-010027-r0tl01kq 60 14 submucosal submucosal NN cord-010027-r0tl01kq 60 15 dissection dissection NN cord-010027-r0tl01kq 60 16 techniques technique NNS cord-010027-r0tl01kq 60 17 ) ) -RRB- cord-010027-r0tl01kq 60 18 allows allow VBZ cord-010027-r0tl01kq 60 19 full full JJ cord-010027-r0tl01kq 60 20 pathological pathological JJ cord-010027-r0tl01kq 60 21 T t NN cord-010027-r0tl01kq 60 22 staging staging NN cord-010027-r0tl01kq 60 23 . . . cord-010027-r0tl01kq 61 1 When when WRB cord-010027-r0tl01kq 61 2 invasive invasive JJ cord-010027-r0tl01kq 61 3 cancer cancer NN cord-010027-r0tl01kq 61 4 is be VBZ cord-010027-r0tl01kq 61 5 eliminated eliminate VBN cord-010027-r0tl01kq 61 6 at at IN cord-010027-r0tl01kq 61 7 multidisciplinary multidisciplinary JJ cord-010027-r0tl01kq 61 8 review review NN cord-010027-r0tl01kq 61 9 ( ( -LRB- cord-010027-r0tl01kq 61 10 i.e. i.e. FW cord-010027-r0tl01kq 61 11 , , , cord-010027-r0tl01kq 61 12 purely purely RB cord-010027-r0tl01kq 61 13 mucosal mucosal JJ cord-010027-r0tl01kq 61 14 neoplasia neoplasia NN cord-010027-r0tl01kq 61 15 confirmed confirm VBN cord-010027-r0tl01kq 61 16 with with IN cord-010027-r0tl01kq 61 17 a a DT cord-010027-r0tl01kq 61 18 nodal nodal JJ cord-010027-r0tl01kq 61 19 risk risk NN cord-010027-r0tl01kq 61 20 < < XX cord-010027-r0tl01kq 61 21 2 2 CD cord-010027-r0tl01kq 61 22 % % NN cord-010027-r0tl01kq 61 23 ) ) -RRB- cord-010027-r0tl01kq 61 24 , , , cord-010027-r0tl01kq 61 25 further further RB cord-010027-r0tl01kq 61 26 endotherapy endotherapy NNP cord-010027-r0tl01kq 61 27 to to TO cord-010027-r0tl01kq 61 28 ablate ablate VB cord-010027-r0tl01kq 61 29 residual residual JJ cord-010027-r0tl01kq 61 30 metaplasia metaplasia NN cord-010027-r0tl01kq 61 31 in in IN cord-010027-r0tl01kq 61 32 BO BO NNP cord-010027-r0tl01kq 61 33 can can MD cord-010027-r0tl01kq 61 34 be be VB cord-010027-r0tl01kq 61 35 performed perform VBN cord-010027-r0tl01kq 61 36 using use VBG cord-010027-r0tl01kq 61 37 radiofrequency radiofrequency NN cord-010027-r0tl01kq 61 38 ablation ablation NN cord-010027-r0tl01kq 61 39 ( ( -LRB- cord-010027-r0tl01kq 61 40 RAF RAF NNP cord-010027-r0tl01kq 61 41 ) ) -RRB- cord-010027-r0tl01kq 61 42 . . . cord-010027-r0tl01kq 62 1 In in IN cord-010027-r0tl01kq 62 2 a a DT cord-010027-r0tl01kq 62 3 tertiary tertiary JJ cord-010027-r0tl01kq 62 4 centre centre NN cord-010027-r0tl01kq 62 5 use use NN cord-010027-r0tl01kq 62 6 of of IN cord-010027-r0tl01kq 62 7 staging stage VBG cord-010027-r0tl01kq 62 8 EMR EMR NNP cord-010027-r0tl01kq 62 9 is be VBZ cord-010027-r0tl01kq 62 10 frequently frequently RB cord-010027-r0tl01kq 62 11 necessary necessary JJ cord-010027-r0tl01kq 62 12 ( ( -LRB- cord-010027-r0tl01kq 62 13 > > NFP cord-010027-r0tl01kq 62 14 60 60 CD cord-010027-r0tl01kq 62 15 % % NN cord-010027-r0tl01kq 62 16 ) ) -RRB- cord-010027-r0tl01kq 62 17 in in IN cord-010027-r0tl01kq 62 18 patients patient NNS cord-010027-r0tl01kq 62 19 referred refer VBN cord-010027-r0tl01kq 62 20 for for IN cord-010027-r0tl01kq 62 21 endotherapy endotherapy NNP cord-010027-r0tl01kq 62 22 and and CC cord-010027-r0tl01kq 62 23 expert expert JJ cord-010027-r0tl01kq 62 24 endoscopy endoscopy NN cord-010027-r0tl01kq 62 25 is be VBZ cord-010027-r0tl01kq 62 26 required require VBN cord-010027-r0tl01kq 62 27 to to TO cord-010027-r0tl01kq 62 28 ensure ensure VB cord-010027-r0tl01kq 62 29 safe safe JJ cord-010027-r0tl01kq 62 30 and and CC cord-010027-r0tl01kq 62 31 complete complete JJ cord-010027-r0tl01kq 62 32 oncological oncological JJ cord-010027-r0tl01kq 62 33 resection resection NN cord-010027-r0tl01kq 62 34 . . . cord-010027-r0tl01kq 63 1 Conversely conversely RB cord-010027-r0tl01kq 63 2 pT1 pt1 JJ cord-010027-r0tl01kq 63 3 submucosal submucosal VB cord-010027-r0tl01kq 63 4 cancers cancer NNS cord-010027-r0tl01kq 63 5 detected detect VBD cord-010027-r0tl01kq 63 6 following follow VBG cord-010027-r0tl01kq 63 7 EMR EMR NNP cord-010027-r0tl01kq 63 8 are be VBP cord-010027-r0tl01kq 63 9 confidently confidently RB cord-010027-r0tl01kq 63 10 triaged triage VBN cord-010027-r0tl01kq 63 11 for for IN cord-010027-r0tl01kq 63 12 oesophagectomy oesophagectomy NN cord-010027-r0tl01kq 63 13 . . . cord-010027-r0tl01kq 64 1 Combination combination NN cord-010027-r0tl01kq 64 2 of of IN cord-010027-r0tl01kq 64 3 EMR EMR NNP cord-010027-r0tl01kq 64 4 and and CC cord-010027-r0tl01kq 64 5 RFA RFA NNP cord-010027-r0tl01kq 64 6 in in IN cord-010027-r0tl01kq 64 7 expert expert JJ cord-010027-r0tl01kq 64 8 groups group NNS cord-010027-r0tl01kq 64 9 exceeds exceed VBZ cord-010027-r0tl01kq 64 10 > > XX cord-010027-r0tl01kq 64 11 95 95 CD cord-010027-r0tl01kq 64 12 % % NN cord-010027-r0tl01kq 64 13 for for IN cord-010027-r0tl01kq 64 14 eradication eradication NN cord-010027-r0tl01kq 64 15 of of IN cord-010027-r0tl01kq 64 16 neoplasia neoplasia NN cord-010027-r0tl01kq 64 17 and and CC cord-010027-r0tl01kq 64 18 metaplasia metaplasia NN cord-010027-r0tl01kq 64 19 . . . cord-010027-r0tl01kq 65 1 Adverse adverse JJ cord-010027-r0tl01kq 65 2 events event NNS cord-010027-r0tl01kq 65 3 are be VBP cord-010027-r0tl01kq 65 4 quite quite RB cord-010027-r0tl01kq 65 5 low low JJ cord-010027-r0tl01kq 65 6 ( ( -LRB- cord-010027-r0tl01kq 65 7 stricture stricture NN cord-010027-r0tl01kq 65 8 form form NN cord-010027-r0tl01kq 65 9 healing healing NN cord-010027-r0tl01kq 65 10 , , , cord-010027-r0tl01kq 65 11 4 4 CD cord-010027-r0tl01kq 65 12 % % NN cord-010027-r0tl01kq 65 13 ; ; , cord-010027-r0tl01kq 65 14 self self NN cord-010027-r0tl01kq 65 15 - - HYPH cord-010027-r0tl01kq 65 16 limited limit VBN cord-010027-r0tl01kq 65 17 haemorrhage haemorrhage NN cord-010027-r0tl01kq 65 18 , , , cord-010027-r0tl01kq 65 19 very very RB cord-010027-r0tl01kq 65 20 rare rare JJ cord-010027-r0tl01kq 65 21 perforations perforation NNS cord-010027-r0tl01kq 65 22 ... ... NFP cord-010027-r0tl01kq 65 23 ) ) -RRB- cord-010027-r0tl01kq 65 24 and and CC cord-010027-r0tl01kq 65 25 recurrence recurrence NN cord-010027-r0tl01kq 65 26 of of IN cord-010027-r0tl01kq 65 27 BO BO NNP cord-010027-r0tl01kq 65 28 is be VBZ cord-010027-r0tl01kq 65 29 also also RB cord-010027-r0tl01kq 65 30 low low JJ cord-010027-r0tl01kq 65 31 ( ( -LRB- cord-010027-r0tl01kq 65 32 < < NNP cord-010027-r0tl01kq 65 33 10 10 CD cord-010027-r0tl01kq 65 34 % % NN cord-010027-r0tl01kq 65 35 at at IN cord-010027-r0tl01kq 65 36 5 5 CD cord-010027-r0tl01kq 65 37 years year NNS cord-010027-r0tl01kq 65 38 ) ) -RRB- cord-010027-r0tl01kq 65 39 . . . cord-010027-r0tl01kq 66 1 Careful careful JJ cord-010027-r0tl01kq 66 2 follow follow NN cord-010027-r0tl01kq 66 3 - - HYPH cord-010027-r0tl01kq 66 4 up up NN cord-010027-r0tl01kq 66 5 endoscopies endoscopy NNS cord-010027-r0tl01kq 66 6 is be VBZ cord-010027-r0tl01kq 66 7 necessary necessary JJ cord-010027-r0tl01kq 66 8 at at IN cord-010027-r0tl01kq 66 9 3 3 CD cord-010027-r0tl01kq 66 10 to to TO cord-010027-r0tl01kq 66 11 6 6 CD cord-010027-r0tl01kq 66 12 months month NNS cord-010027-r0tl01kq 66 13 initially initially RB cord-010027-r0tl01kq 66 14 ; ; : cord-010027-r0tl01kq 66 15 intervals interval NNS cord-010027-r0tl01kq 66 16 theerafter theerafter NNP cord-010027-r0tl01kq 66 17 probably probably RB cord-010027-r0tl01kq 66 18 yearly yearly RB cord-010027-r0tl01kq 66 19 . . . cord-010027-r0tl01kq 67 1   . cord-010027-r0tl01kq 68 1 The the DT cord-010027-r0tl01kq 68 2 Pathologist Pathologist NNP cord-010027-r0tl01kq 68 3 's 's POS cord-010027-r0tl01kq 68 4 Role role NN cord-010027-r0tl01kq 68 5 in in IN cord-010027-r0tl01kq 68 6 the the DT cord-010027-r0tl01kq 68 7 Diagnosis Diagnosis NNP cord-010027-r0tl01kq 68 8 and and CC cord-010027-r0tl01kq 68 9 Management Management NNP cord-010027-r0tl01kq 68 10 of of IN cord-010027-r0tl01kq 68 11 Neoplasia Neoplasia NNP cord-010027-r0tl01kq 68 12 in in IN cord-010027-r0tl01kq 68 13 Barrett Barrett NNP cord-010027-r0tl01kq 68 14 's 's POS cord-010027-r0tl01kq 68 15 Oesophagus Oesophagus NNP cord-010027-r0tl01kq 68 16 P p NN cord-010027-r0tl01kq 68 17 C C NNP cord-010027-r0tl01kq 68 18 Muldoon Muldoon NNP cord-010027-r0tl01kq 68 19 St. St. NNP cord-010027-r0tl01kq 68 20 James James NNP cord-010027-r0tl01kq 68 21 's 's POS cord-010027-r0tl01kq 68 22 Hospital Hospital NNP cord-010027-r0tl01kq 68 23 , , , cord-010027-r0tl01kq 68 24 Dublin Dublin NNP cord-010027-r0tl01kq 68 25 , , , cord-010027-r0tl01kq 68 26 Ireland Ireland NNP cord-010027-r0tl01kq 69 1 The the DT cord-010027-r0tl01kq 69 2 last last JJ cord-010027-r0tl01kq 69 3 decade decade NN cord-010027-r0tl01kq 69 4 has have VBZ cord-010027-r0tl01kq 69 5 seen see VBN cord-010027-r0tl01kq 69 6 a a DT cord-010027-r0tl01kq 69 7 revolution revolution NN cord-010027-r0tl01kq 69 8 in in IN cord-010027-r0tl01kq 69 9 the the DT cord-010027-r0tl01kq 69 10 management management NN cord-010027-r0tl01kq 69 11 of of IN cord-010027-r0tl01kq 69 12 neoplasia neoplasia NN cord-010027-r0tl01kq 69 13 in in IN cord-010027-r0tl01kq 69 14 Barrett Barrett NNP cord-010027-r0tl01kq 69 15 's 's POS cord-010027-r0tl01kq 69 16 oesophagus oesophagus NN cord-010027-r0tl01kq 69 17 . . . cord-010027-r0tl01kq 70 1 More more RBR cord-010027-r0tl01kq 70 2 detailed detailed JJ cord-010027-r0tl01kq 70 3 biopsy biopsy NN cord-010027-r0tl01kq 70 4 protocols protocol NNS cord-010027-r0tl01kq 70 5 , , , cord-010027-r0tl01kq 70 6 along along IN cord-010027-r0tl01kq 70 7 with with IN cord-010027-r0tl01kq 70 8 the the DT cord-010027-r0tl01kq 70 9 advent advent NN cord-010027-r0tl01kq 70 10 of of IN cord-010027-r0tl01kq 70 11 sophisticated sophisticated JJ cord-010027-r0tl01kq 70 12 local local JJ cord-010027-r0tl01kq 70 13 resection resection NN cord-010027-r0tl01kq 70 14 and and CC cord-010027-r0tl01kq 70 15 ablation ablation NN cord-010027-r0tl01kq 70 16 techniques technique NNS cord-010027-r0tl01kq 70 17 , , , cord-010027-r0tl01kq 70 18 have have VBP cord-010027-r0tl01kq 70 19 radically radically RB cord-010027-r0tl01kq 70 20 altered alter VBN cord-010027-r0tl01kq 70 21 the the DT cord-010027-r0tl01kq 70 22 management management NN cord-010027-r0tl01kq 70 23 of of IN cord-010027-r0tl01kq 70 24 this this DT cord-010027-r0tl01kq 70 25 expanding expand VBG cord-010027-r0tl01kq 70 26 cohort cohort NN cord-010027-r0tl01kq 70 27 of of IN cord-010027-r0tl01kq 70 28 patients patient NNS cord-010027-r0tl01kq 70 29 . . . cord-010027-r0tl01kq 71 1 These these DT cord-010027-r0tl01kq 71 2 new new JJ cord-010027-r0tl01kq 71 3 treatment treatment NN cord-010027-r0tl01kq 71 4 modalities modality NNS cord-010027-r0tl01kq 71 5 , , , cord-010027-r0tl01kq 71 6 coupled couple VBN cord-010027-r0tl01kq 71 7 with with IN cord-010027-r0tl01kq 71 8 a a DT cord-010027-r0tl01kq 71 9 massive massive JJ cord-010027-r0tl01kq 71 10 increase increase NN cord-010027-r0tl01kq 71 11 in in IN cord-010027-r0tl01kq 71 12 the the DT cord-010027-r0tl01kq 71 13 numbers number NNS cord-010027-r0tl01kq 71 14 of of IN cord-010027-r0tl01kq 71 15 cases case NNS cord-010027-r0tl01kq 71 16 of of IN cord-010027-r0tl01kq 71 17 Barrett Barrett NNP cord-010027-r0tl01kq 71 18 's 's POS cord-010027-r0tl01kq 71 19 being be VBG cord-010027-r0tl01kq 71 20 diagnosed diagnose VBN cord-010027-r0tl01kq 71 21 , , , cord-010027-r0tl01kq 71 22 have have VBP cord-010027-r0tl01kq 71 23 significantly significantly RB cord-010027-r0tl01kq 71 24 altered alter VBN cord-010027-r0tl01kq 71 25 the the DT cord-010027-r0tl01kq 71 26 demands demand NNS cord-010027-r0tl01kq 71 27 placed place VBN cord-010027-r0tl01kq 71 28 upon upon IN cord-010027-r0tl01kq 71 29 pathologists pathologist NNS cord-010027-r0tl01kq 71 30 involved involve VBN cord-010027-r0tl01kq 71 31 in in IN cord-010027-r0tl01kq 71 32 this this DT cord-010027-r0tl01kq 71 33 area area NN cord-010027-r0tl01kq 71 34 . . . cord-010027-r0tl01kq 72 1 These these DT cord-010027-r0tl01kq 72 2 changes change NNS cord-010027-r0tl01kq 72 3 have have VBP cord-010027-r0tl01kq 72 4 presented present VBN cord-010027-r0tl01kq 72 5 pathologists pathologist NNS cord-010027-r0tl01kq 72 6 with with IN cord-010027-r0tl01kq 72 7 an an DT cord-010027-r0tl01kq 72 8 opportunity opportunity NN cord-010027-r0tl01kq 72 9 to to TO cord-010027-r0tl01kq 72 10 challenge challenge VB cord-010027-r0tl01kq 72 11 our -PRON- PRP$ cord-010027-r0tl01kq 72 12 existing exist VBG cord-010027-r0tl01kq 72 13 practices practice NNS cord-010027-r0tl01kq 72 14 , , , cord-010027-r0tl01kq 72 15 to to TO cord-010027-r0tl01kq 72 16 improve improve VB cord-010027-r0tl01kq 72 17 the the DT cord-010027-r0tl01kq 72 18 reproducibility reproducibility NN cord-010027-r0tl01kq 72 19 of of IN cord-010027-r0tl01kq 72 20 our -PRON- PRP$ cord-010027-r0tl01kq 72 21 analysis analysis NN cord-010027-r0tl01kq 72 22 and and CC cord-010027-r0tl01kq 72 23 to to TO cord-010027-r0tl01kq 72 24 increase increase VB cord-010027-r0tl01kq 72 25 the the DT cord-010027-r0tl01kq 72 26 clinical clinical JJ cord-010027-r0tl01kq 72 27 relevance relevance NN cord-010027-r0tl01kq 72 28 of of IN cord-010027-r0tl01kq 72 29 the the DT cord-010027-r0tl01kq 72 30 way way NN cord-010027-r0tl01kq 72 31 in in IN cord-010027-r0tl01kq 72 32 which which WDT cord-010027-r0tl01kq 72 33 we -PRON- PRP cord-010027-r0tl01kq 72 34 report report VBP cord-010027-r0tl01kq 72 35 neoplasia neoplasia NN cord-010027-r0tl01kq 72 36 in in IN cord-010027-r0tl01kq 72 37 this this DT cord-010027-r0tl01kq 72 38 setting setting NN cord-010027-r0tl01kq 72 39 , , , cord-010027-r0tl01kq 72 40 where where WRB cord-010027-r0tl01kq 72 41 the the DT cord-010027-r0tl01kq 72 42 pathologist pathologist NN cord-010027-r0tl01kq 72 43 plays play VBZ cord-010027-r0tl01kq 72 44 a a DT cord-010027-r0tl01kq 72 45 critical critical JJ cord-010027-r0tl01kq 72 46 role role NN cord-010027-r0tl01kq 72 47 in in IN cord-010027-r0tl01kq 72 48 the the DT cord-010027-r0tl01kq 72 49 multidisciplinary multidisciplinary JJ cord-010027-r0tl01kq 72 50 management management NN cord-010027-r0tl01kq 72 51 approach approach NN cord-010027-r0tl01kq 72 52 . . . cord-010027-r0tl01kq 73 1 This this DT cord-010027-r0tl01kq 73 2 talk talk NN cord-010027-r0tl01kq 73 3 aims aim VBZ cord-010027-r0tl01kq 73 4 to to TO cord-010027-r0tl01kq 73 5 outline outline VB cord-010027-r0tl01kq 73 6 a a DT cord-010027-r0tl01kq 73 7 practical practical JJ cord-010027-r0tl01kq 73 8 approach approach NN cord-010027-r0tl01kq 73 9 to to IN cord-010027-r0tl01kq 73 10 the the DT cord-010027-r0tl01kq 73 11 handling handling NN cord-010027-r0tl01kq 73 12 of of IN cord-010027-r0tl01kq 73 13 these these DT cord-010027-r0tl01kq 73 14 specimens specimen NNS cord-010027-r0tl01kq 73 15 and and CC cord-010027-r0tl01kq 73 16 to to TO cord-010027-r0tl01kq 73 17 provide provide VB cord-010027-r0tl01kq 73 18 clear clear JJ cord-010027-r0tl01kq 73 19 guidelines guideline NNS cord-010027-r0tl01kq 73 20 as as IN cord-010027-r0tl01kq 73 21 to to IN cord-010027-r0tl01kq 73 22 how how WRB cord-010027-r0tl01kq 73 23 to to TO cord-010027-r0tl01kq 73 24 report report VB cord-010027-r0tl01kq 73 25 them -PRON- PRP cord-010027-r0tl01kq 73 26 in in IN cord-010027-r0tl01kq 73 27 the the DT cord-010027-r0tl01kq 73 28 most most RBS cord-010027-r0tl01kq 73 29 clinically clinically RB cord-010027-r0tl01kq 73 30 useful useful JJ cord-010027-r0tl01kq 73 31 way way NN cord-010027-r0tl01kq 73 32 . . . cord-010027-r0tl01kq 74 1   NNP cord-010027-r0tl01kq 74 2 Modern Modern NNP cord-010027-r0tl01kq 74 3 Management Management NNP cord-010027-r0tl01kq 74 4 in in IN cord-010027-r0tl01kq 74 5 IBD IBD NNP cord-010027-r0tl01kq 74 6 P P NNP cord-010027-r0tl01kq 74 7 MWR MWR NNP cord-010027-r0tl01kq 74 8 Vieth Vieth NNP cord-010027-r0tl01kq 74 9 1 1 CD cord-010027-r0tl01kq 74 10 ; ; : cord-010027-r0tl01kq 74 11 H H NNP cord-010027-r0tl01kq 74 12 Neumann Neumann NNP cord-010027-r0tl01kq 74 13 2 2 CD cord-010027-r0tl01kq 74 14 1 1 CD cord-010027-r0tl01kq 74 15 Klinikum Klinikum NNP cord-010027-r0tl01kq 74 16 Bayreuth Bayreuth NNP cord-010027-r0tl01kq 74 17 , , , cord-010027-r0tl01kq 74 18 Pathology Pathology NNP cord-010027-r0tl01kq 74 19 , , , cord-010027-r0tl01kq 74 20 Bayreuth Bayreuth NNP cord-010027-r0tl01kq 74 21 , , , cord-010027-r0tl01kq 74 22 Germany Germany NNP cord-010027-r0tl01kq 74 23 ; ; : cord-010027-r0tl01kq 74 24 2 2 CD cord-010027-r0tl01kq 74 25 University University NNP cord-010027-r0tl01kq 74 26 Hospital Hospital NNP cord-010027-r0tl01kq 74 27 Erlangen Erlangen NNP cord-010027-r0tl01kq 74 28 , , , cord-010027-r0tl01kq 74 29 Medical Medical NNP cord-010027-r0tl01kq 74 30 Clinic Clinic NNP cord-010027-r0tl01kq 74 31 I -PRON- PRP cord-010027-r0tl01kq 74 32 , , , cord-010027-r0tl01kq 74 33 Erlangen Erlangen NNP cord-010027-r0tl01kq 74 34 , , , cord-010027-r0tl01kq 74 35 Germany Germany NNP cord-010027-r0tl01kq 74 36 Ulcerative ulcerative JJ cord-010027-r0tl01kq 74 37 colitis colitis NN cord-010027-r0tl01kq 74 38 and and CC cord-010027-r0tl01kq 74 39 Crohn Crohn NNP cord-010027-r0tl01kq 74 40 's 's POS cord-010027-r0tl01kq 74 41 make make VB cord-010027-r0tl01kq 74 42 a a DT cord-010027-r0tl01kq 74 43 distinct distinct JJ cord-010027-r0tl01kq 74 44 histological histological JJ cord-010027-r0tl01kq 74 45 picture picture NN cord-010027-r0tl01kq 74 46 . . . cord-010027-r0tl01kq 75 1 Around around IN cord-010027-r0tl01kq 75 2 80 80 CD cord-010027-r0tl01kq 75 3 % % NN cord-010027-r0tl01kq 75 4 of of IN cord-010027-r0tl01kq 75 5 an an DT cord-010027-r0tl01kq 75 6 IBD IBD NNP cord-010027-r0tl01kq 75 7 diagnosis diagnosis NN cord-010027-r0tl01kq 75 8 is be VBZ cord-010027-r0tl01kq 75 9 the the DT cord-010027-r0tl01kq 75 10 clinical clinical JJ cord-010027-r0tl01kq 75 11 information information NN cord-010027-r0tl01kq 75 12 and and CC cord-010027-r0tl01kq 75 13 about about RB cord-010027-r0tl01kq 75 14 20 20 CD cord-010027-r0tl01kq 75 15 % % NN cord-010027-r0tl01kq 75 16 derives derive VBZ cord-010027-r0tl01kq 75 17 from from IN cord-010027-r0tl01kq 75 18 histology histology NN cord-010027-r0tl01kq 75 19 , , , cord-010027-r0tl01kq 75 20 only only RB cord-010027-r0tl01kq 75 21 . . . cord-010027-r0tl01kq 76 1 For for IN cord-010027-r0tl01kq 76 2 routine routine JJ cord-010027-r0tl01kq 76 3 purposes purpose NNS cord-010027-r0tl01kq 76 4 it -PRON- PRP cord-010027-r0tl01kq 76 5 is be VBZ cord-010027-r0tl01kq 76 6 recommendable recommendable JJ cord-010027-r0tl01kq 76 7 in in IN cord-010027-r0tl01kq 76 8 case case NN cord-010027-r0tl01kq 76 9 of of IN cord-010027-r0tl01kq 76 10 a a DT cord-010027-r0tl01kq 76 11 first first JJ cord-010027-r0tl01kq 76 12 manifestation manifestation NN cord-010027-r0tl01kq 76 13 of of IN cord-010027-r0tl01kq 76 14 an an DT cord-010027-r0tl01kq 76 15 IBD IBD NNP cord-010027-r0tl01kq 76 16 to to TO cord-010027-r0tl01kq 76 17 make make VB cord-010027-r0tl01kq 76 18 a a DT cord-010027-r0tl01kq 76 19 diagnosis diagnosis NN cord-010027-r0tl01kq 76 20 such such JJ cord-010027-r0tl01kq 76 21 as as IN cord-010027-r0tl01kq 76 22 : : : cord-010027-r0tl01kq 76 23 " " `` cord-010027-r0tl01kq 76 24 picture picture NN cord-010027-r0tl01kq 76 25 of of IN cord-010027-r0tl01kq 76 26 ulcerative ulcerative JJ cord-010027-r0tl01kq 76 27 colitis colitis NN cord-010027-r0tl01kq 76 28 or or CC cord-010027-r0tl01kq 76 29 picture picture NN cord-010027-r0tl01kq 76 30 of of IN cord-010027-r0tl01kq 76 31 crohn crohn NNP cord-010027-r0tl01kq 76 32 's 's POS cord-010027-r0tl01kq 76 33 disease disease NN cord-010027-r0tl01kq 76 34 " " '' cord-010027-r0tl01kq 76 35 and and CC cord-010027-r0tl01kq 76 36 to to TO cord-010027-r0tl01kq 76 37 recommend recommend VB cord-010027-r0tl01kq 76 38 a a DT cord-010027-r0tl01kq 76 39 follow follow NN cord-010027-r0tl01kq 76 40 - - HYPH cord-010027-r0tl01kq 76 41 up up NN cord-010027-r0tl01kq 76 42 endoscopy endoscopy NN cord-010027-r0tl01kq 76 43 with with IN cord-010027-r0tl01kq 76 44 biopsies biopsy NNS cord-010027-r0tl01kq 76 45 not not RB cord-010027-r0tl01kq 76 46 prior prior RB cord-010027-r0tl01kq 76 47 to to IN cord-010027-r0tl01kq 76 48 8 8 CD cord-010027-r0tl01kq 76 49 weeks week NNS cord-010027-r0tl01kq 76 50 after after IN cord-010027-r0tl01kq 76 51 the the DT cord-010027-r0tl01kq 76 52 first first JJ cord-010027-r0tl01kq 76 53 endoscopy endoscopy NN cord-010027-r0tl01kq 76 54 and and CC cord-010027-r0tl01kq 76 55 than than IN cord-010027-r0tl01kq 76 56 confirm confirm VB cord-010027-r0tl01kq 76 57 the the DT cord-010027-r0tl01kq 76 58 diagnosis diagnosis NN cord-010027-r0tl01kq 76 59 later later RB cord-010027-r0tl01kq 76 60 to to TO cord-010027-r0tl01kq 76 61 exclude exclude VB cord-010027-r0tl01kq 76 62 mimickers mimicker NNS cord-010027-r0tl01kq 76 63 of of IN cord-010027-r0tl01kq 76 64 IBD IBD NNP cord-010027-r0tl01kq 76 65 . . . cord-010027-r0tl01kq 77 1 In in IN cord-010027-r0tl01kq 77 2 Crohn Crohn NNP cord-010027-r0tl01kq 77 3 's 's POS cord-010027-r0tl01kq 77 4 disease disease NN cord-010027-r0tl01kq 77 5 it -PRON- PRP cord-010027-r0tl01kq 77 6 is be VBZ cord-010027-r0tl01kq 77 7 helpful helpful JJ cord-010027-r0tl01kq 77 8 to to TO cord-010027-r0tl01kq 77 9 take take VB cord-010027-r0tl01kq 77 10 biopsies biopsy NNS cord-010027-r0tl01kq 77 11 from from IN cord-010027-r0tl01kq 77 12 the the DT cord-010027-r0tl01kq 77 13 upper upper JJ cord-010027-r0tl01kq 77 14 GI gi NN cord-010027-r0tl01kq 77 15 - - HYPH cord-010027-r0tl01kq 77 16 tract tract NN cord-010027-r0tl01kq 77 17 to to TO cord-010027-r0tl01kq 77 18 get get VB cord-010027-r0tl01kq 77 19 further further JJ cord-010027-r0tl01kq 77 20 hints hint NNS cord-010027-r0tl01kq 77 21 of of IN cord-010027-r0tl01kq 77 22 Crohn Crohn NNP cord-010027-r0tl01kq 77 23 's 's POS cord-010027-r0tl01kq 77 24 disease disease NN cord-010027-r0tl01kq 77 25 . . . cord-010027-r0tl01kq 78 1 In in IN cord-010027-r0tl01kq 78 2 case case NN cord-010027-r0tl01kq 78 3 of of IN cord-010027-r0tl01kq 78 4 neoplasia neoplasia NN cord-010027-r0tl01kq 78 5 , , , cord-010027-r0tl01kq 78 6 the the DT cord-010027-r0tl01kq 78 7 guidelines guideline NNS cord-010027-r0tl01kq 78 8 leave leave VBP cord-010027-r0tl01kq 78 9 some some DT cord-010027-r0tl01kq 78 10 room room NN cord-010027-r0tl01kq 78 11 for for IN cord-010027-r0tl01kq 78 12 local local JJ cord-010027-r0tl01kq 78 13 endoscopic endoscopic JJ cord-010027-r0tl01kq 78 14 treatment treatment NN cord-010027-r0tl01kq 78 15 of of IN cord-010027-r0tl01kq 78 16 low low JJ cord-010027-r0tl01kq 78 17 grade grade NN cord-010027-r0tl01kq 78 18 dysplasia dysplasia NN cord-010027-r0tl01kq 78 19 whereas whereas IN cord-010027-r0tl01kq 78 20 high high JJ cord-010027-r0tl01kq 78 21 grade grade NN cord-010027-r0tl01kq 78 22 dysplasia dysplasia NN cord-010027-r0tl01kq 78 23 is be VBZ cord-010027-r0tl01kq 78 24 still still RB cord-010027-r0tl01kq 78 25 seen see VBN cord-010027-r0tl01kq 78 26 as as IN cord-010027-r0tl01kq 78 27 an an DT cord-010027-r0tl01kq 78 28 indication indication NN cord-010027-r0tl01kq 78 29 for for IN cord-010027-r0tl01kq 78 30 operation operation NN cord-010027-r0tl01kq 78 31 since since IN cord-010027-r0tl01kq 78 32 there there EX cord-010027-r0tl01kq 78 33 is be VBZ cord-010027-r0tl01kq 78 34 a a DT cord-010027-r0tl01kq 78 35 high high JJ cord-010027-r0tl01kq 78 36 probability probability NN cord-010027-r0tl01kq 78 37 of of IN cord-010027-r0tl01kq 78 38 detecting detect VBG cord-010027-r0tl01kq 78 39 a a DT cord-010027-r0tl01kq 78 40 carcinoma carcinoma NN cord-010027-r0tl01kq 78 41 in in IN cord-010027-r0tl01kq 78 42 the the DT cord-010027-r0tl01kq 78 43 operation operation NN cord-010027-r0tl01kq 78 44 specimen specimen NN cord-010027-r0tl01kq 78 45 afterwards afterwards RB cord-010027-r0tl01kq 78 46 . . . cord-010027-r0tl01kq 79 1 Operation operation NN cord-010027-r0tl01kq 79 2 means mean VBZ cord-010027-r0tl01kq 79 3 on on IN cord-010027-r0tl01kq 79 4 normal normal JJ cord-010027-r0tl01kq 79 5 complete complete JJ cord-010027-r0tl01kq 79 6 proctocolectomy proctocolectomy NN cord-010027-r0tl01kq 79 7 . . . cord-010027-r0tl01kq 80 1 This this DT cord-010027-r0tl01kq 80 2 has have VBZ cord-010027-r0tl01kq 80 3 been be VBN cord-010027-r0tl01kq 80 4 indivdually indivdually RB cord-010027-r0tl01kq 80 5 questioned question VBN cord-010027-r0tl01kq 80 6 in in IN cord-010027-r0tl01kq 80 7 the the DT cord-010027-r0tl01kq 80 8 last last JJ cord-010027-r0tl01kq 80 9 time time NN cord-010027-r0tl01kq 80 10 . . . cord-010027-r0tl01kq 81 1 There there EX cord-010027-r0tl01kq 81 2 are be VBP cord-010027-r0tl01kq 81 3 exceptions exception NNS cord-010027-r0tl01kq 81 4 for for IN cord-010027-r0tl01kq 81 5 discussing discuss VBG cord-010027-r0tl01kq 81 6 the the DT cord-010027-r0tl01kq 81 7 indication indication NN cord-010027-r0tl01kq 81 8 of of IN cord-010027-r0tl01kq 81 9 an an DT cord-010027-r0tl01kq 81 10 operation operation NN cord-010027-r0tl01kq 81 11 in in IN cord-010027-r0tl01kq 81 12 IBD IBD NNP cord-010027-r0tl01kq 81 13 : : : cord-010027-r0tl01kq 81 14 cases case NNS cord-010027-r0tl01kq 81 15 with with IN cord-010027-r0tl01kq 81 16 numerous numerous JJ cord-010027-r0tl01kq 81 17 pseudopolyps pseudopolyps NN cord-010027-r0tl01kq 81 18 that that DT cord-010027-r0tl01kq 81 19 can can MD cord-010027-r0tl01kq 81 20 not not RB cord-010027-r0tl01kq 81 21 be be VB cord-010027-r0tl01kq 81 22 searched search VBN cord-010027-r0tl01kq 81 23 for for IN cord-010027-r0tl01kq 81 24 neoplasia neoplasia NN cord-010027-r0tl01kq 81 25 , , , cord-010027-r0tl01kq 81 26 low low JJ cord-010027-r0tl01kq 81 27 grade grade NN cord-010027-r0tl01kq 81 28 lesions lesion NNS cord-010027-r0tl01kq 81 29 that that WDT cord-010027-r0tl01kq 81 30 can can MD cord-010027-r0tl01kq 81 31 not not RB cord-010027-r0tl01kq 81 32 be be VB cord-010027-r0tl01kq 81 33 completely completely RB cord-010027-r0tl01kq 81 34 removed remove VBN cord-010027-r0tl01kq 81 35 , , , cord-010027-r0tl01kq 81 36 multiple multiple JJ cord-010027-r0tl01kq 81 37 neoplastic neoplastic JJ cord-010027-r0tl01kq 81 38 lesions lesion NNS cord-010027-r0tl01kq 81 39 and and CC cord-010027-r0tl01kq 81 40 unresponsiveness unresponsiveness NN cord-010027-r0tl01kq 81 41 to to IN cord-010027-r0tl01kq 81 42 medical medical JJ cord-010027-r0tl01kq 81 43 treatment treatment NN cord-010027-r0tl01kq 81 44 . . . cord-010027-r0tl01kq 82 1 Operation operation NN cord-010027-r0tl01kq 82 2 and and CC cord-010027-r0tl01kq 82 3 endoscopic endoscopic NN cord-010027-r0tl01kq 82 4 specimen specimen NN cord-010027-r0tl01kq 82 5 in in IN cord-010027-r0tl01kq 82 6 IBD IBD NNP cord-010027-r0tl01kq 82 7 need need VBP cord-010027-r0tl01kq 82 8 a a DT cord-010027-r0tl01kq 82 9 subtile subtile JJ cord-010027-r0tl01kq 82 10 search search NN cord-010027-r0tl01kq 82 11 for for IN cord-010027-r0tl01kq 82 12 neoplastic neoplastic JJ cord-010027-r0tl01kq 82 13 lesions lesion NNS cord-010027-r0tl01kq 82 14 . . . cord-010027-r0tl01kq 83 1 A a DT cord-010027-r0tl01kq 83 2 microscope microscope NN cord-010027-r0tl01kq 83 3 with with IN cord-010027-r0tl01kq 83 4 reverse reverse JJ cord-010027-r0tl01kq 83 5 light light NN cord-010027-r0tl01kq 83 6 may may MD cord-010027-r0tl01kq 83 7 help help VB cord-010027-r0tl01kq 83 8 to to TO cord-010027-r0tl01kq 83 9 identify identify VB cord-010027-r0tl01kq 83 10 suspicous suspicous JJ cord-010027-r0tl01kq 83 11 lesions lesion NNS cord-010027-r0tl01kq 83 12 and and CC cord-010027-r0tl01kq 83 13 may may MD cord-010027-r0tl01kq 83 14 help help VB cord-010027-r0tl01kq 83 15 to to TO cord-010027-r0tl01kq 83 16 decide decide VB cord-010027-r0tl01kq 83 17 where where WRB cord-010027-r0tl01kq 83 18 exactely exactely RB cord-010027-r0tl01kq 83 19 to to TO cord-010027-r0tl01kq 83 20 cut cut VB cord-010027-r0tl01kq 83 21 a a DT cord-010027-r0tl01kq 83 22 specimen specimen NN cord-010027-r0tl01kq 83 23 . . . cord-010027-r0tl01kq 84 1 In in IN cord-010027-r0tl01kq 84 2 conclusion conclusion NN cord-010027-r0tl01kq 84 3 a a DT cord-010027-r0tl01kq 84 4 tight tight JJ cord-010027-r0tl01kq 84 5 cooperation cooperation NN cord-010027-r0tl01kq 84 6 between between IN cord-010027-r0tl01kq 84 7 clinical clinical JJ cord-010027-r0tl01kq 84 8 and and CC cord-010027-r0tl01kq 84 9 histopathological histopathological JJ cord-010027-r0tl01kq 84 10 partners partner NNS cord-010027-r0tl01kq 84 11 is be VBZ cord-010027-r0tl01kq 84 12 recommended recommend VBN cord-010027-r0tl01kq 84 13 to to TO cord-010027-r0tl01kq 84 14 reach reach VB cord-010027-r0tl01kq 84 15 a a DT cord-010027-r0tl01kq 84 16 high high JJ cord-010027-r0tl01kq 84 17 standard standard NN cord-010027-r0tl01kq 84 18 for for IN cord-010027-r0tl01kq 84 19 patient patient JJ cord-010027-r0tl01kq 84 20 care care NN cord-010027-r0tl01kq 84 21 . . . cord-010027-r0tl01kq 85 1 Second second JJ cord-010027-r0tl01kq 85 2 opinions opinion NNS cord-010027-r0tl01kq 85 3 may may MD cord-010027-r0tl01kq 85 4 help help VB cord-010027-r0tl01kq 85 5 to to TO cord-010027-r0tl01kq 85 6 achieve achieve VB cord-010027-r0tl01kq 85 7 and and CC cord-010027-r0tl01kq 85 8 fuel fuel VB cord-010027-r0tl01kq 85 9 the the DT cord-010027-r0tl01kq 85 10 own own JJ cord-010027-r0tl01kq 85 11 learning learning NN cord-010027-r0tl01kq 85 12 process process NN cord-010027-r0tl01kq 85 13 esp esp RB cord-010027-r0tl01kq 85 14 . . . cord-010027-r0tl01kq 86 1 in in IN cord-010027-r0tl01kq 86 2 an an DT cord-010027-r0tl01kq 86 3 institution institution NN cord-010027-r0tl01kq 86 4 with with IN cord-010027-r0tl01kq 86 5 a a DT cord-010027-r0tl01kq 86 6 lower low JJR cord-010027-r0tl01kq 86 7 number number NN cord-010027-r0tl01kq 86 8 of of IN cord-010027-r0tl01kq 86 9 IBD IBD NNP cord-010027-r0tl01kq 86 10 patients patient NNS cord-010027-r0tl01kq 86 11 during during IN cord-010027-r0tl01kq 86 12 the the DT cord-010027-r0tl01kq 86 13 year year NN cord-010027-r0tl01kq 86 14 . . . cord-010027-r0tl01kq 87 1 Colorectal colorectal JJ cord-010027-r0tl01kq 87 2 or or CC cord-010027-r0tl01kq 87 3 bowel bowel NN cord-010027-r0tl01kq 87 4 cancer cancer NN cord-010027-r0tl01kq 87 5 screening screening NN cord-010027-r0tl01kq 87 6 ( ( -LRB- cord-010027-r0tl01kq 87 7 BCS BCS NNP cord-010027-r0tl01kq 87 8 ) ) -RRB- cord-010027-r0tl01kq 87 9 is be VBZ cord-010027-r0tl01kq 87 10 commonplace commonplace JJ cord-010027-r0tl01kq 87 11 and and CC cord-010027-r0tl01kq 87 12 organised organise VBN cord-010027-r0tl01kq 87 13 national national JJ cord-010027-r0tl01kq 87 14 screening screening NN cord-010027-r0tl01kq 87 15 programmes programme NNS cord-010027-r0tl01kq 87 16 have have VBP cord-010027-r0tl01kq 87 17 been be VBN cord-010027-r0tl01kq 87 18 developed develop VBN cord-010027-r0tl01kq 87 19 in in IN cord-010027-r0tl01kq 87 20 many many JJ cord-010027-r0tl01kq 87 21 countries country NNS cord-010027-r0tl01kq 87 22 , , , cord-010027-r0tl01kq 87 23 most most RBS cord-010027-r0tl01kq 87 24 notably notably RB cord-010027-r0tl01kq 87 25 in in IN cord-010027-r0tl01kq 87 26 western western JJ cord-010027-r0tl01kq 87 27 Europe Europe NNP cord-010027-r0tl01kq 87 28 . . . cord-010027-r0tl01kq 88 1 Traditionally traditionally RB cord-010027-r0tl01kq 88 2 , , , cord-010027-r0tl01kq 88 3 faecal faecal JJ cord-010027-r0tl01kq 88 4 occult occult JJ cord-010027-r0tl01kq 88 5 blood blood NN cord-010027-r0tl01kq 88 6 ( ( -LRB- cord-010027-r0tl01kq 88 7 FOB FOB NNP cord-010027-r0tl01kq 88 8 ) ) -RRB- cord-010027-r0tl01kq 88 9 detection detection NN cord-010027-r0tl01kq 88 10 has have VBZ cord-010027-r0tl01kq 88 11 been be VBN cord-010027-r0tl01kq 88 12 the the DT cord-010027-r0tl01kq 88 13 screening screening NN cord-010027-r0tl01kq 88 14 method method NN cord-010027-r0tl01kq 88 15 of of IN cord-010027-r0tl01kq 88 16 choice choice NN cord-010027-r0tl01kq 88 17 , , , cord-010027-r0tl01kq 88 18 those those DT cord-010027-r0tl01kq 88 19 testing test VBG cord-010027-r0tl01kq 88 20 positive positive JJ cord-010027-r0tl01kq 88 21 being be VBG cord-010027-r0tl01kq 88 22 selected select VBN cord-010027-r0tl01kq 88 23 for for IN cord-010027-r0tl01kq 88 24 subsequent subsequent JJ cord-010027-r0tl01kq 88 25 colonoscopy colonoscopy NN cord-010027-r0tl01kq 88 26 , , , cord-010027-r0tl01kq 88 27 but but CC cord-010027-r0tl01kq 88 28 this this DT cord-010027-r0tl01kq 88 29 is be VBZ cord-010027-r0tl01kq 88 30 changing change VBG cord-010027-r0tl01kq 88 31 , , , cord-010027-r0tl01kq 88 32 with with IN cord-010027-r0tl01kq 88 33 alternative alternative JJ cord-010027-r0tl01kq 88 34 or or CC cord-010027-r0tl01kq 88 35 additional additional JJ cord-010027-r0tl01kq 88 36 screening screening NN cord-010027-r0tl01kq 88 37 tests test NNS cord-010027-r0tl01kq 88 38 gaining gain VBG cord-010027-r0tl01kq 88 39 favour favour NN cord-010027-r0tl01kq 88 40 . . . cord-010027-r0tl01kq 89 1 Most Most JJS cord-010027-r0tl01kq 89 2 of of IN cord-010027-r0tl01kq 89 3 the the DT cord-010027-r0tl01kq 89 4 problems problem NNS cord-010027-r0tl01kq 89 5 in in IN cord-010027-r0tl01kq 89 6 BCS BCS NNP cord-010027-r0tl01kq 89 7 pathology pathology NN cord-010027-r0tl01kq 89 8 practice practice NN cord-010027-r0tl01kq 89 9 are be VBP cord-010027-r0tl01kq 89 10 particularly particularly RB cord-010027-r0tl01kq 89 11 related relate VBN cord-010027-r0tl01kq 89 12 to to IN cord-010027-r0tl01kq 89 13 FOB FOB NNP cord-010027-r0tl01kq 89 14 - - HYPH cord-010027-r0tl01kq 89 15 based base VBN cord-010027-r0tl01kq 89 16 screening screening NN cord-010027-r0tl01kq 89 17 programmes programme NNS cord-010027-r0tl01kq 89 18 , , , cord-010027-r0tl01kq 89 19 as as IN cord-010027-r0tl01kq 89 20 these these DT cord-010027-r0tl01kq 89 21 are be VBP cord-010027-r0tl01kq 89 22 enriched enrich VBN cord-010027-r0tl01kq 89 23 for for IN cord-010027-r0tl01kq 89 24 large large JJ cord-010027-r0tl01kq 89 25 , , , cord-010027-r0tl01kq 89 26 bleeding bleed VBG cord-010027-r0tl01kq 89 27 sigmoid sigmoid JJ cord-010027-r0tl01kq 89 28 adenomas adenoma NNS cord-010027-r0tl01kq 89 29 , , , cord-010027-r0tl01kq 89 30 in in IN cord-010027-r0tl01kq 89 31 comparison comparison NN cord-010027-r0tl01kq 89 32 to to IN cord-010027-r0tl01kq 89 33 programmes programme NNS cord-010027-r0tl01kq 89 34 utilising utilise VBG cord-010027-r0tl01kq 89 35 endoscopy endoscopy NN cord-010027-r0tl01kq 89 36 as as IN cord-010027-r0tl01kq 89 37 the the DT cord-010027-r0tl01kq 89 38 primary primary JJ cord-010027-r0tl01kq 89 39 screening screening NN cord-010027-r0tl01kq 89 40 modality modality NN cord-010027-r0tl01kq 89 41 . . . cord-010027-r0tl01kq 90 1 Experience experience NN cord-010027-r0tl01kq 90 2 within within IN cord-010027-r0tl01kq 90 3 the the DT cord-010027-r0tl01kq 90 4 closely closely RB cord-010027-r0tl01kq 90 5 related relate VBN cord-010027-r0tl01kq 90 6 UK UK NNP cord-010027-r0tl01kq 90 7 BCS BCS NNP cord-010027-r0tl01kq 90 8 programmes programme NNS cord-010027-r0tl01kq 90 9 to to IN cord-010027-r0tl01kq 90 10 date date NN cord-010027-r0tl01kq 90 11 has have VBZ cord-010027-r0tl01kq 90 12 yielded yield VBN cord-010027-r0tl01kq 90 13 several several JJ cord-010027-r0tl01kq 90 14 recurring recur VBG cord-010027-r0tl01kq 90 15 problems problem NNS cord-010027-r0tl01kq 90 16 : : : cord-010027-r0tl01kq 90 17 the the DT cord-010027-r0tl01kq 90 18 diagnosis diagnosis NN cord-010027-r0tl01kq 90 19 of of IN cord-010027-r0tl01kq 90 20 stage stage NN cord-010027-r0tl01kq 90 21 pT1 pT1 VBN cord-010027-r0tl01kq 90 22 or or CC cord-010027-r0tl01kq 90 23 ' ' `` cord-010027-r0tl01kq 90 24 polyp polyp NN cord-010027-r0tl01kq 90 25 ' ' '' cord-010027-r0tl01kq 90 26 cancers cancer NNS cord-010027-r0tl01kq 90 27 , , , cord-010027-r0tl01kq 90 28 in in IN cord-010027-r0tl01kq 90 29 particular particular JJ cord-010027-r0tl01kq 90 30 distinguishing distinguish VBG cord-010027-r0tl01kq 90 31 common common JJ cord-010027-r0tl01kq 90 32 epithelial epithelial JJ cord-010027-r0tl01kq 90 33 misplacement misplacement NN cord-010027-r0tl01kq 90 34 from from IN cord-010027-r0tl01kq 90 35 ' ' `` cord-010027-r0tl01kq 90 36 true true JJ cord-010027-r0tl01kq 90 37 ' ' '' cord-010027-r0tl01kq 90 38 invasion invasion NN cord-010027-r0tl01kq 90 39 ; ; : cord-010027-r0tl01kq 90 40 the the DT cord-010027-r0tl01kq 90 41 management management NN cord-010027-r0tl01kq 90 42 of of IN cord-010027-r0tl01kq 90 43 stage stage NN cord-010027-r0tl01kq 90 44 pT1 pT1 VBN cord-010027-r0tl01kq 90 45 cancers cancer NNS cord-010027-r0tl01kq 90 46 , , , cord-010027-r0tl01kq 90 47 in in IN cord-010027-r0tl01kq 90 48 relation relation NN cord-010027-r0tl01kq 90 49 to to IN cord-010027-r0tl01kq 90 50 indications indication NNS cord-010027-r0tl01kq 90 51 for for IN cord-010027-r0tl01kq 90 52 surgical surgical JJ cord-010027-r0tl01kq 90 53 intervention intervention NN cord-010027-r0tl01kq 90 54 after after IN cord-010027-r0tl01kq 90 55 such such PDT cord-010027-r0tl01kq 90 56 a a DT cord-010027-r0tl01kq 90 57 diagnosis diagnosis NN cord-010027-r0tl01kq 90 58 ; ; : cord-010027-r0tl01kq 90 59 and and CC cord-010027-r0tl01kq 90 60 the the DT cord-010027-r0tl01kq 90 61 minimum minimum JJ cord-010027-r0tl01kq 90 62 criteria criterion NNS cord-010027-r0tl01kq 90 63 for for IN cord-010027-r0tl01kq 90 64 a a DT cord-010027-r0tl01kq 90 65 biopsy biopsy JJ cord-010027-r0tl01kq 90 66 diagnosis diagnosis NN cord-010027-r0tl01kq 90 67 of of IN cord-010027-r0tl01kq 90 68 colorectal colorectal JJ cord-010027-r0tl01kq 90 69 adenocarcinoma adenocarcinoma NN cord-010027-r0tl01kq 90 70 . . . cord-010027-r0tl01kq 91 1 These these DT cord-010027-r0tl01kq 91 2 issues issue NNS cord-010027-r0tl01kq 91 3 will will MD cord-010027-r0tl01kq 91 4 be be VB cord-010027-r0tl01kq 91 5 discussed discuss VBN cord-010027-r0tl01kq 91 6 with with IN cord-010027-r0tl01kq 91 7 illustrative illustrative JJ cord-010027-r0tl01kq 91 8 examples example NNS cord-010027-r0tl01kq 91 9 , , , cord-010027-r0tl01kq 91 10 along along IN cord-010027-r0tl01kq 91 11 with with IN cord-010027-r0tl01kq 91 12 the the DT cord-010027-r0tl01kq 91 13 somewhat somewhat RB cord-010027-r0tl01kq 91 14 more more RBR cord-010027-r0tl01kq 91 15 mundane mundane JJ cord-010027-r0tl01kq 91 16 but but CC cord-010027-r0tl01kq 91 17 highly highly RB cord-010027-r0tl01kq 91 18 important important JJ cord-010027-r0tl01kq 91 19 practical practical JJ cord-010027-r0tl01kq 91 20 issue issue NN cord-010027-r0tl01kq 91 21 of of IN cord-010027-r0tl01kq 91 22 measuring measure VBG cord-010027-r0tl01kq 91 23 various various JJ cord-010027-r0tl01kq 91 24 parameters parameter NNS cord-010027-r0tl01kq 91 25 related relate VBN cord-010027-r0tl01kq 91 26 to to IN cord-010027-r0tl01kq 91 27 BCS BCS NNP cord-010027-r0tl01kq 91 28 pathology pathology NN cord-010027-r0tl01kq 91 29 . . . cord-010027-r0tl01kq 92 1 The the DT cord-010027-r0tl01kq 92 2 importance importance NN cord-010027-r0tl01kq 92 3 of of IN cord-010027-r0tl01kq 92 4 quality quality NN cord-010027-r0tl01kq 92 5 assurance assurance NN cord-010027-r0tl01kq 92 6 measures measure NNS cord-010027-r0tl01kq 92 7 to to TO cord-010027-r0tl01kq 92 8 ensure ensure VB cord-010027-r0tl01kq 92 9 high high JJ cord-010027-r0tl01kq 92 10 standards standard NNS cord-010027-r0tl01kq 92 11 within within IN cord-010027-r0tl01kq 92 12 BCS BCS NNP cord-010027-r0tl01kq 92 13 pathology pathology NN cord-010027-r0tl01kq 92 14 is be VBZ cord-010027-r0tl01kq 92 15 emphasised emphasise VBN cord-010027-r0tl01kq 92 16 . . . cord-010027-r0tl01kq 93 1 With with IN cord-010027-r0tl01kq 93 2 the the DT cord-010027-r0tl01kq 93 3 introduction introduction NN cord-010027-r0tl01kq 93 4 of of IN cord-010027-r0tl01kq 93 5 colorectal colorectal JJ cord-010027-r0tl01kq 93 6 cancer cancer NN cord-010027-r0tl01kq 93 7 screening screening NN cord-010027-r0tl01kq 93 8 in in IN cord-010027-r0tl01kq 93 9 various various JJ cord-010027-r0tl01kq 93 10 countries country NNS cord-010027-r0tl01kq 93 11 of of IN cord-010027-r0tl01kq 93 12 the the DT cord-010027-r0tl01kq 93 13 EU EU NNP cord-010027-r0tl01kq 93 14 there there EX cord-010027-r0tl01kq 93 15 is be VBZ cord-010027-r0tl01kq 93 16 a a DT cord-010027-r0tl01kq 93 17 sharp sharp JJ cord-010027-r0tl01kq 93 18 increase increase NN cord-010027-r0tl01kq 93 19 in in IN cord-010027-r0tl01kq 93 20 the the DT cord-010027-r0tl01kq 93 21 incidence incidence NN cord-010027-r0tl01kq 93 22 of of IN cord-010027-r0tl01kq 93 23 early early JJ cord-010027-r0tl01kq 93 24 colorectal colorectal JJ cord-010027-r0tl01kq 93 25 cancer cancer NN cord-010027-r0tl01kq 93 26 . . . cord-010027-r0tl01kq 94 1 A a DT cord-010027-r0tl01kq 94 2 significant significant JJ cord-010027-r0tl01kq 94 3 part part NN cord-010027-r0tl01kq 94 4 of of IN cord-010027-r0tl01kq 94 5 these these DT cord-010027-r0tl01kq 94 6 early early JJ cord-010027-r0tl01kq 94 7 tumours tumour NNS cord-010027-r0tl01kq 94 8 presents present VBZ cord-010027-r0tl01kq 94 9 in in IN cord-010027-r0tl01kq 94 10 a a DT cord-010027-r0tl01kq 94 11 pedunculated pedunculated JJ cord-010027-r0tl01kq 94 12 polyp polyp NN cord-010027-r0tl01kq 94 13 . . . cord-010027-r0tl01kq 95 1 In in IN cord-010027-r0tl01kq 95 2 most most JJS cord-010027-r0tl01kq 95 3 cases case NNS cord-010027-r0tl01kq 95 4 , , , cord-010027-r0tl01kq 95 5 these these DT cord-010027-r0tl01kq 95 6 carcinomas carcinoma NNS cord-010027-r0tl01kq 95 7 are be VBP cord-010027-r0tl01kq 95 8 already already RB cord-010027-r0tl01kq 95 9 completely completely RB cord-010027-r0tl01kq 95 10 removed remove VBN cord-010027-r0tl01kq 95 11 by by IN cord-010027-r0tl01kq 95 12 polypectomy polypectomy NN cord-010027-r0tl01kq 95 13 . . . cord-010027-r0tl01kq 96 1 Classic classic JJ cord-010027-r0tl01kq 96 2 risk risk NN cord-010027-r0tl01kq 96 3 factors factor NNS cord-010027-r0tl01kq 96 4 that that WDT cord-010027-r0tl01kq 96 5 suggest suggest VBP cord-010027-r0tl01kq 96 6 a a DT cord-010027-r0tl01kq 96 7 high high JJ cord-010027-r0tl01kq 96 8 risk risk NN cord-010027-r0tl01kq 96 9 for for IN cord-010027-r0tl01kq 96 10 lymph lymph NN cord-010027-r0tl01kq 96 11 node node NN cord-010027-r0tl01kq 96 12 metastases metastasis NNS cord-010027-r0tl01kq 96 13 include include VBP cord-010027-r0tl01kq 96 14 Haggitt Haggitt NNP cord-010027-r0tl01kq 96 15 level level NN cord-010027-r0tl01kq 96 16 4 4 CD cord-010027-r0tl01kq 96 17 , , , cord-010027-r0tl01kq 96 18 positive positive JJ cord-010027-r0tl01kq 96 19 resection resection NN cord-010027-r0tl01kq 96 20 margins margin NNS cord-010027-r0tl01kq 96 21 , , , cord-010027-r0tl01kq 96 22 poor poor JJ cord-010027-r0tl01kq 96 23 differentiation differentiation NN cord-010027-r0tl01kq 96 24 and and CC cord-010027-r0tl01kq 96 25 lymphatic lymphatic JJ cord-010027-r0tl01kq 96 26 or or CC cord-010027-r0tl01kq 96 27 vascular vascular JJ cord-010027-r0tl01kq 96 28 invasion invasion NN cord-010027-r0tl01kq 96 29 . . . cord-010027-r0tl01kq 97 1 However however RB cord-010027-r0tl01kq 97 2 , , , cord-010027-r0tl01kq 97 3 the the DT cord-010027-r0tl01kq 97 4 evidence evidence NN cord-010027-r0tl01kq 97 5 is be VBZ cord-010027-r0tl01kq 97 6 rather rather RB cord-010027-r0tl01kq 97 7 thin thin JJ cord-010027-r0tl01kq 97 8 . . . cord-010027-r0tl01kq 98 1 Most Most JJS cord-010027-r0tl01kq 98 2 pT1 pt1 JJ cord-010027-r0tl01kq 98 3 studies study NNS cord-010027-r0tl01kq 98 4 are be VBP cord-010027-r0tl01kq 98 5 performed perform VBN cord-010027-r0tl01kq 98 6 on on IN cord-010027-r0tl01kq 98 7 sessile sessile JJ cord-010027-r0tl01kq 98 8 polyps polyp NNS cord-010027-r0tl01kq 98 9 . . . cord-010027-r0tl01kq 99 1 Risk risk NN cord-010027-r0tl01kq 99 2 factors factor NNS cord-010027-r0tl01kq 99 3 are be VBP cord-010027-r0tl01kq 99 4 more more RBR cord-010027-r0tl01kq 99 5 firmly firmly RB cord-010027-r0tl01kq 99 6 established establish VBN cord-010027-r0tl01kq 99 7 and and CC cord-010027-r0tl01kq 99 8 include include VBP cord-010027-r0tl01kq 99 9 differentiation differentiation NN cord-010027-r0tl01kq 99 10 grade grade NN cord-010027-r0tl01kq 99 11 , , , cord-010027-r0tl01kq 99 12 lymphatic lymphatic JJ cord-010027-r0tl01kq 99 13 invasion invasion NN cord-010027-r0tl01kq 99 14 , , , cord-010027-r0tl01kq 99 15 Kikuchi Kikuchi NNP cord-010027-r0tl01kq 99 16 level level NN cord-010027-r0tl01kq 99 17 sm3 sm3 NNP cord-010027-r0tl01kq 99 18 or or CC cord-010027-r0tl01kq 99 19 the the DT cord-010027-r0tl01kq 99 20 presence presence NN cord-010027-r0tl01kq 99 21 of of IN cord-010027-r0tl01kq 99 22 budding bud VBG cord-010027-r0tl01kq 99 23 . . . cord-010027-r0tl01kq 100 1 However however RB cord-010027-r0tl01kq 100 2 , , , cord-010027-r0tl01kq 100 3 for for IN cord-010027-r0tl01kq 100 4 a a DT cord-010027-r0tl01kq 100 5 clinical clinical JJ cord-010027-r0tl01kq 100 6 useful useful JJ cord-010027-r0tl01kq 100 7 decision decision NN cord-010027-r0tl01kq 100 8 model model NN cord-010027-r0tl01kq 100 9 , , , cord-010027-r0tl01kq 100 10 we -PRON- PRP cord-010027-r0tl01kq 100 11 will will MD cord-010027-r0tl01kq 100 12 need need VB cord-010027-r0tl01kq 100 13 an an DT cord-010027-r0tl01kq 100 14 integrated integrate VBN cord-010027-r0tl01kq 100 15 approach approach NN cord-010027-r0tl01kq 100 16 , , , cord-010027-r0tl01kq 100 17 and and CC cord-010027-r0tl01kq 100 18 both both DT cord-010027-r0tl01kq 100 19 specificity specificity NN cord-010027-r0tl01kq 100 20 and and CC cord-010027-r0tl01kq 100 21 sensitivity sensitivity NN cord-010027-r0tl01kq 100 22 of of IN cord-010027-r0tl01kq 100 23 the the DT cord-010027-r0tl01kq 100 24 various various JJ cord-010027-r0tl01kq 100 25 factors factor NNS cord-010027-r0tl01kq 100 26 should should MD cord-010027-r0tl01kq 100 27 be be VB cord-010027-r0tl01kq 100 28 taken take VBN cord-010027-r0tl01kq 100 29 into into IN cord-010027-r0tl01kq 100 30 account account NN cord-010027-r0tl01kq 100 31 . . . cord-010027-r0tl01kq 101 1 Radical radical JJ cord-010027-r0tl01kq 101 2 surgery surgery NN cord-010027-r0tl01kq 101 3 seems seem VBZ cord-010027-r0tl01kq 101 4 overtreatment overtreatment JJ cord-010027-r0tl01kq 101 5 for for IN cord-010027-r0tl01kq 101 6 a a DT cord-010027-r0tl01kq 101 7 large large JJ cord-010027-r0tl01kq 101 8 number number NN cord-010027-r0tl01kq 101 9 of of IN cord-010027-r0tl01kq 101 10 polyp polyp NN cord-010027-r0tl01kq 101 11 cancers cancer NNS cord-010027-r0tl01kq 101 12 . . . cord-010027-r0tl01kq 102 1 Leeds Leeds NNP cord-010027-r0tl01kq 102 2 University University NNP cord-010027-r0tl01kq 102 3 , , , cord-010027-r0tl01kq 102 4 Leeds Leeds NNP cord-010027-r0tl01kq 102 5 , , , cord-010027-r0tl01kq 102 6 UK UK NNP cord-010027-r0tl01kq 102 7 Minimum Minimum NNP cord-010027-r0tl01kq 102 8 datasets dataset NNS cord-010027-r0tl01kq 102 9 have have VBP cord-010027-r0tl01kq 102 10 changed change VBN cord-010027-r0tl01kq 102 11 cancer cancer NN cord-010027-r0tl01kq 102 12 reporting reporting NN cord-010027-r0tl01kq 102 13 . . . cord-010027-r0tl01kq 103 1 This this DT cord-010027-r0tl01kq 103 2 talk talk NN cord-010027-r0tl01kq 103 3 will will MD cord-010027-r0tl01kq 103 4 explain explain VB cord-010027-r0tl01kq 103 5 the the DT cord-010027-r0tl01kq 103 6 decision decision NN cord-010027-r0tl01kq 103 7 making make VBG cord-010027-r0tl01kq 103 8 processes process NNS cord-010027-r0tl01kq 103 9 behind behind IN cord-010027-r0tl01kq 103 10 the the DT cord-010027-r0tl01kq 103 11 latest late JJS cord-010027-r0tl01kq 103 12 datasets dataset NNS cord-010027-r0tl01kq 103 13 both both DT cord-010027-r0tl01kq 103 14 for for IN cord-010027-r0tl01kq 103 15 cancer cancer NN cord-010027-r0tl01kq 103 16 reporting reporting NN cord-010027-r0tl01kq 103 17 and and CC cord-010027-r0tl01kq 103 18 bowel bowel NN cord-010027-r0tl01kq 103 19 cancer cancer NN cord-010027-r0tl01kq 103 20 screening screening NN cord-010027-r0tl01kq 103 21 . . . cord-010027-r0tl01kq 104 1 It -PRON- PRP cord-010027-r0tl01kq 104 2 will will MD cord-010027-r0tl01kq 104 3 also also RB cord-010027-r0tl01kq 104 4 look look VB cord-010027-r0tl01kq 104 5 at at IN cord-010027-r0tl01kq 104 6 where where WRB cord-010027-r0tl01kq 104 7 we -PRON- PRP cord-010027-r0tl01kq 104 8 may may MD cord-010027-r0tl01kq 104 9 be be VB cord-010027-r0tl01kq 104 10 going go VBG cord-010027-r0tl01kq 104 11 in in IN cord-010027-r0tl01kq 104 12 the the DT cord-010027-r0tl01kq 104 13 future future NN cord-010027-r0tl01kq 104 14 for for IN cord-010027-r0tl01kq 104 15 staging stage VBG cord-010027-r0tl01kq 104 16 and and CC cord-010027-r0tl01kq 104 17 molecular molecular JJ cord-010027-r0tl01kq 104 18 reporting reporting NN cord-010027-r0tl01kq 104 19 . . . cord-010027-r0tl01kq 105 1 The the DT cord-010027-r0tl01kq 105 2 intestines intestine NNS cord-010027-r0tl01kq 105 3 play play VBP cord-010027-r0tl01kq 105 4 host host NN cord-010027-r0tl01kq 105 5 to to IN cord-010027-r0tl01kq 105 6 a a DT cord-010027-r0tl01kq 105 7 broad broad JJ cord-010027-r0tl01kq 105 8 spectrum spectrum NN cord-010027-r0tl01kq 105 9 of of IN cord-010027-r0tl01kq 105 10 infective infective JJ cord-010027-r0tl01kq 105 11 organisms organism NNS cord-010027-r0tl01kq 105 12 ranging range VBG cord-010027-r0tl01kq 105 13 from from IN cord-010027-r0tl01kq 105 14 viruses virus NNS cord-010027-r0tl01kq 105 15 , , , cord-010027-r0tl01kq 105 16 through through IN cord-010027-r0tl01kq 105 17 bacteria bacteria NNS cord-010027-r0tl01kq 105 18 , , , cord-010027-r0tl01kq 105 19 fungi fungus NNS cord-010027-r0tl01kq 105 20 and and CC cord-010027-r0tl01kq 105 21 unicellular unicellular JJ cord-010027-r0tl01kq 105 22 parasites parasite NNS cord-010027-r0tl01kq 105 23 to to IN cord-010027-r0tl01kq 105 24 worms worm NNS cord-010027-r0tl01kq 105 25 . . . cord-010027-r0tl01kq 106 1 The the DT cord-010027-r0tl01kq 106 2 spectrum spectrum NN cord-010027-r0tl01kq 106 3 of of IN cord-010027-r0tl01kq 106 4 infections infection NNS cord-010027-r0tl01kq 106 5 seen see VBN cord-010027-r0tl01kq 106 6 varies vary VBZ cord-010027-r0tl01kq 106 7 with with IN cord-010027-r0tl01kq 106 8 geographical geographical JJ cord-010027-r0tl01kq 106 9 location location NN cord-010027-r0tl01kq 106 10 , , , cord-010027-r0tl01kq 106 11 due due IN cord-010027-r0tl01kq 106 12 to to IN cord-010027-r0tl01kq 106 13 socioeconomic socioeconomic JJ cord-010027-r0tl01kq 106 14 factors factor NNS cord-010027-r0tl01kq 106 15 and and CC cord-010027-r0tl01kq 106 16 due due IN cord-010027-r0tl01kq 106 17 to to IN cord-010027-r0tl01kq 106 18 changes change NNS cord-010027-r0tl01kq 106 19 in in IN cord-010027-r0tl01kq 106 20 human human JJ cord-010027-r0tl01kq 106 21 behaviour behaviour NN cord-010027-r0tl01kq 106 22 . . . cord-010027-r0tl01kq 107 1 Immunocompromisation Immunocompromisation NNP cord-010027-r0tl01kq 107 2 due due IN cord-010027-r0tl01kq 107 3 to to IN cord-010027-r0tl01kq 107 4 infections infection NNS cord-010027-r0tl01kq 107 5 ( ( -LRB- cord-010027-r0tl01kq 107 6 in in IN cord-010027-r0tl01kq 107 7 particular particular JJ cord-010027-r0tl01kq 107 8 HIV HIV NNP cord-010027-r0tl01kq 107 9 ) ) -RRB- cord-010027-r0tl01kq 107 10 , , , cord-010027-r0tl01kq 107 11 malignancy malignancy NN cord-010027-r0tl01kq 107 12 ( ( -LRB- cord-010027-r0tl01kq 107 13 especially especially RB cord-010027-r0tl01kq 107 14 haematological haematological JJ cord-010027-r0tl01kq 107 15 tumours tumour NNS cord-010027-r0tl01kq 107 16 ) ) -RRB- cord-010027-r0tl01kq 107 17 and and CC cord-010027-r0tl01kq 107 18 the the DT cord-010027-r0tl01kq 107 19 use use NN cord-010027-r0tl01kq 107 20 of of IN cord-010027-r0tl01kq 107 21 immunosuppressive immunosuppressive JJ cord-010027-r0tl01kq 107 22 drugs drug NNS cord-010027-r0tl01kq 107 23 also also RB cord-010027-r0tl01kq 107 24 has have VBZ cord-010027-r0tl01kq 107 25 an an DT cord-010027-r0tl01kq 107 26 important important JJ cord-010027-r0tl01kq 107 27 role role NN cord-010027-r0tl01kq 107 28 in in IN cord-010027-r0tl01kq 107 29 determining determine VBG cord-010027-r0tl01kq 107 30 the the DT cord-010027-r0tl01kq 107 31 infections infection NNS cord-010027-r0tl01kq 107 32 commonly commonly RB cord-010027-r0tl01kq 107 33 seen see VBN cord-010027-r0tl01kq 107 34 in in IN cord-010027-r0tl01kq 107 35 the the DT cord-010027-r0tl01kq 107 36 GI GI NNP cord-010027-r0tl01kq 107 37 tract tract NN cord-010027-r0tl01kq 107 38 . . . cord-010027-r0tl01kq 108 1 The the DT cord-010027-r0tl01kq 108 2 typical typical JJ cord-010027-r0tl01kq 108 3 pathological pathological JJ cord-010027-r0tl01kq 108 4 features feature NNS cord-010027-r0tl01kq 108 5 of of IN cord-010027-r0tl01kq 108 6 intestinal intestinal JJ cord-010027-r0tl01kq 108 7 infections infection NNS cord-010027-r0tl01kq 108 8 will will MD cord-010027-r0tl01kq 108 9 be be VB cord-010027-r0tl01kq 108 10 discussed discuss VBN cord-010027-r0tl01kq 108 11 together together RB cord-010027-r0tl01kq 108 12 with with IN cord-010027-r0tl01kq 108 13 suggestions suggestion NNS cord-010027-r0tl01kq 108 14 on on IN cord-010027-r0tl01kq 108 15 how how WRB cord-010027-r0tl01kq 108 16 to to TO cord-010027-r0tl01kq 108 17 optimise optimise VB cord-010027-r0tl01kq 108 18 the the DT cord-010027-r0tl01kq 108 19 diagnosis diagnosis NN cord-010027-r0tl01kq 108 20 of of IN cord-010027-r0tl01kq 108 21 such such JJ cord-010027-r0tl01kq 108 22 pathologies pathology NNS cord-010027-r0tl01kq 108 23 . . . cord-010027-r0tl01kq 109 1 Erasme Erasme NNP cord-010027-r0tl01kq 109 2 University University NNP cord-010027-r0tl01kq 109 3 Hospital Hospital NNP cord-010027-r0tl01kq 109 4 , , , cord-010027-r0tl01kq 109 5 Brussels Brussels NNP cord-010027-r0tl01kq 109 6 , , , cord-010027-r0tl01kq 109 7 Belgium Belgium NNP cord-010027-r0tl01kq 109 8 Pathologists Pathologists NNPS cord-010027-r0tl01kq 109 9 are be VBP cord-010027-r0tl01kq 109 10 confronted confront VBN cord-010027-r0tl01kq 109 11 with with IN cord-010027-r0tl01kq 109 12 different different JJ cord-010027-r0tl01kq 109 13 types type NNS cord-010027-r0tl01kq 109 14 of of IN cord-010027-r0tl01kq 109 15 colitis colitis NN cord-010027-r0tl01kq 109 16 , , , cord-010027-r0tl01kq 109 17 most most RBS cord-010027-r0tl01kq 109 18 commonly commonly RB cord-010027-r0tl01kq 109 19 infectious infectious JJ cord-010027-r0tl01kq 109 20 colitis colitis NN cord-010027-r0tl01kq 109 21 and and CC cord-010027-r0tl01kq 109 22 inflammatory inflammatory JJ cord-010027-r0tl01kq 109 23 bowel bowel NN cord-010027-r0tl01kq 109 24 disease disease NN cord-010027-r0tl01kq 109 25 ( ( -LRB- cord-010027-r0tl01kq 109 26 IBD IBD NNP cord-010027-r0tl01kq 109 27 ) ) -RRB- cord-010027-r0tl01kq 109 28 followed follow VBN cord-010027-r0tl01kq 109 29 by by IN cord-010027-r0tl01kq 109 30 microscopic microscopic JJ cord-010027-r0tl01kq 109 31 colitis colitis NN cord-010027-r0tl01kq 109 32 and and CC cord-010027-r0tl01kq 109 33 ischaemic ischaemic JJ cord-010027-r0tl01kq 109 34 colitis colitis NN cord-010027-r0tl01kq 109 35 . . . cord-010027-r0tl01kq 110 1 Several several JJ cord-010027-r0tl01kq 110 2 other other JJ cord-010027-r0tl01kq 110 3 forms form NNS cord-010027-r0tl01kq 110 4 of of IN cord-010027-r0tl01kq 110 5 colitis colitis NN cord-010027-r0tl01kq 110 6 , , , cord-010027-r0tl01kq 110 7 however however RB cord-010027-r0tl01kq 110 8 , , , cord-010027-r0tl01kq 110 9 exist exist VBP cord-010027-r0tl01kq 110 10 and and CC cord-010027-r0tl01kq 110 11 might may MD cord-010027-r0tl01kq 110 12 be be VB cord-010027-r0tl01kq 110 13 underrecognised underrecognise VBN cord-010027-r0tl01kq 110 14 ; ; : cord-010027-r0tl01kq 110 15 these these DT cord-010027-r0tl01kq 110 16 diseases disease NNS cord-010027-r0tl01kq 110 17 include include VBP cord-010027-r0tl01kq 110 18 segmental segmental JJ cord-010027-r0tl01kq 110 19 colitis colitis NN cord-010027-r0tl01kq 110 20 associated associate VBN cord-010027-r0tl01kq 110 21 with with IN cord-010027-r0tl01kq 110 22 diverticulosis diverticulosis NN cord-010027-r0tl01kq 110 23 , , , cord-010027-r0tl01kq 110 24 diversion diversion NN cord-010027-r0tl01kq 110 25 colitis colitis NN cord-010027-r0tl01kq 110 26 , , , cord-010027-r0tl01kq 110 27 eosinophilic eosinophilic JJ cord-010027-r0tl01kq 110 28 colitis colitis NN cord-010027-r0tl01kq 110 29 and and CC cord-010027-r0tl01kq 110 30 Behcet Behcet NNP cord-010027-r0tl01kq 110 31 's 's POS cord-010027-r0tl01kq 110 32 colitis colitis NN cord-010027-r0tl01kq 110 33 . . . cord-010027-r0tl01kq 111 1 Clinical clinical JJ cord-010027-r0tl01kq 111 2 presentations presentation NNS cord-010027-r0tl01kq 111 3 of of IN cord-010027-r0tl01kq 111 4 these these DT cord-010027-r0tl01kq 111 5 rare rare JJ cord-010027-r0tl01kq 111 6 types type NNS cord-010027-r0tl01kq 111 7 of of IN cord-010027-r0tl01kq 111 8 colitis colitis NN cord-010027-r0tl01kq 111 9 vary vary VBP cord-010027-r0tl01kq 111 10 , , , cord-010027-r0tl01kq 111 11 and and CC cord-010027-r0tl01kq 111 12 laboratory laboratory NN cord-010027-r0tl01kq 111 13 data datum NNS cord-010027-r0tl01kq 111 14 are be VBP cord-010027-r0tl01kq 111 15 often often RB cord-010027-r0tl01kq 111 16 non non JJ cord-010027-r0tl01kq 111 17 - - JJ cord-010027-r0tl01kq 111 18 specific specific JJ cord-010027-r0tl01kq 111 19 ; ; : cord-010027-r0tl01kq 111 20 mucosal mucosal JJ cord-010027-r0tl01kq 111 21 biopsy biopsy NN cord-010027-r0tl01kq 111 22 is be VBZ cord-010027-r0tl01kq 111 23 essential essential JJ cord-010027-r0tl01kq 111 24 in in IN cord-010027-r0tl01kq 111 25 establishing establish VBG cord-010027-r0tl01kq 111 26 the the DT cord-010027-r0tl01kq 111 27 diagnosis diagnosis NN cord-010027-r0tl01kq 111 28 . . . cord-010027-r0tl01kq 112 1 Segmental Segmental NNP cord-010027-r0tl01kq 112 2 colitis colitis NN cord-010027-r0tl01kq 112 3 associated associate VBN cord-010027-r0tl01kq 112 4 with with IN cord-010027-r0tl01kq 112 5 diverticulosis diverticulosis NN cord-010027-r0tl01kq 112 6 ( ( -LRB- cord-010027-r0tl01kq 112 7 SCAD SCAD NNP cord-010027-r0tl01kq 112 8 ) ) -RRB- cord-010027-r0tl01kq 112 9 is be VBZ cord-010027-r0tl01kq 112 10 mainly mainly RB cord-010027-r0tl01kq 112 11 characterised characterise VBN cord-010027-r0tl01kq 112 12 by by IN cord-010027-r0tl01kq 112 13 the the DT cord-010027-r0tl01kq 112 14 involvement involvement NN cord-010027-r0tl01kq 112 15 of of IN cord-010027-r0tl01kq 112 16 the the DT cord-010027-r0tl01kq 112 17 sigmoid sigmoid JJ cord-010027-r0tl01kq 112 18 colon colon NN cord-010027-r0tl01kq 112 19 with with IN cord-010027-r0tl01kq 112 20 sparing sparing NN cord-010027-r0tl01kq 112 21 of of IN cord-010027-r0tl01kq 112 22 the the DT cord-010027-r0tl01kq 112 23 rectum rectum NN cord-010027-r0tl01kq 112 24 and and CC cord-010027-r0tl01kq 112 25 proximal proximal JJ cord-010027-r0tl01kq 112 26 colon colon NN cord-010027-r0tl01kq 112 27 . . . cord-010027-r0tl01kq 113 1 SCAD SCAD NNP cord-010027-r0tl01kq 113 2 often often RB cord-010027-r0tl01kq 113 3 mimics mimic VBZ cord-010027-r0tl01kq 113 4 IBD IBD NNP cord-010027-r0tl01kq 113 5 at at IN cord-010027-r0tl01kq 113 6 endoscopic endoscopic NNS cord-010027-r0tl01kq 113 7 and and CC cord-010027-r0tl01kq 113 8 histological histological JJ cord-010027-r0tl01kq 113 9 examination examination NN cord-010027-r0tl01kq 113 10 ; ; : cord-010027-r0tl01kq 113 11 since since IN cord-010027-r0tl01kq 113 12 SCAD SCAD NNP cord-010027-r0tl01kq 113 13 has have VBZ cord-010027-r0tl01kq 113 14 a a DT cord-010027-r0tl01kq 113 15 self self NN cord-010027-r0tl01kq 113 16 - - HYPH cord-010027-r0tl01kq 113 17 limited limit VBN cord-010027-r0tl01kq 113 18 course course NN cord-010027-r0tl01kq 113 19 that that WDT cord-010027-r0tl01kq 113 20 resolves resolve VBZ cord-010027-r0tl01kq 113 21 without without IN cord-010027-r0tl01kq 113 22 further further JJ cord-010027-r0tl01kq 113 23 recurrence recurrence NN cord-010027-r0tl01kq 113 24 or or CC cord-010027-r0tl01kq 113 25 need need NN cord-010027-r0tl01kq 113 26 for for IN cord-010027-r0tl01kq 113 27 treatment treatment NN cord-010027-r0tl01kq 113 28 , , , cord-010027-r0tl01kq 113 29 the the DT cord-010027-r0tl01kq 113 30 implications implication NNS cord-010027-r0tl01kq 113 31 of of IN cord-010027-r0tl01kq 113 32 an an DT cord-010027-r0tl01kq 113 33 inaccurate inaccurate JJ cord-010027-r0tl01kq 113 34 diagnosis diagnosis NN cord-010027-r0tl01kq 113 35 are be VBP cord-010027-r0tl01kq 113 36 obvious obvious JJ cord-010027-r0tl01kq 113 37 . . . cord-010027-r0tl01kq 114 1 Diversion diversion NN cord-010027-r0tl01kq 114 2 colitis colitis NN cord-010027-r0tl01kq 114 3 is be VBZ cord-010027-r0tl01kq 114 4 a a DT cord-010027-r0tl01kq 114 5 non non JJ cord-010027-r0tl01kq 114 6 - - JJ cord-010027-r0tl01kq 114 7 specific specific JJ cord-010027-r0tl01kq 114 8 colonic colonic JJ cord-010027-r0tl01kq 114 9 inflammation inflammation NN cord-010027-r0tl01kq 114 10 following follow VBG cord-010027-r0tl01kq 114 11 surgical surgical JJ cord-010027-r0tl01kq 114 12 diversion diversion NN cord-010027-r0tl01kq 114 13 of of IN cord-010027-r0tl01kq 114 14 the the DT cord-010027-r0tl01kq 114 15 faecal faecal JJ cord-010027-r0tl01kq 114 16 stream stream NN cord-010027-r0tl01kq 114 17 . . . cord-010027-r0tl01kq 115 1 Is be VBZ cord-010027-r0tl01kq 115 2 is be VBZ cord-010027-r0tl01kq 115 3 characterised characterise VBN cord-010027-r0tl01kq 115 4 by by IN cord-010027-r0tl01kq 115 5 a a DT cord-010027-r0tl01kq 115 6 chronic chronic JJ cord-010027-r0tl01kq 115 7 lymphoplasmacytic lymphoplasmacytic JJ cord-010027-r0tl01kq 115 8 infiltrate infiltrate NN cord-010027-r0tl01kq 115 9 , , , cord-010027-r0tl01kq 115 10 and and CC cord-010027-r0tl01kq 115 11 the the DT cord-010027-r0tl01kq 115 12 existence existence NN cord-010027-r0tl01kq 115 13 of of IN cord-010027-r0tl01kq 115 14 lymphoid lymphoid JJ cord-010027-r0tl01kq 115 15 follicular follicular JJ cord-010027-r0tl01kq 115 16 hyperplasia hyperplasia NN cord-010027-r0tl01kq 115 17 is be VBZ cord-010027-r0tl01kq 115 18 considered consider VBN cord-010027-r0tl01kq 115 19 to to TO cord-010027-r0tl01kq 115 20 be be VB cord-010027-r0tl01kq 115 21 a a DT cord-010027-r0tl01kq 115 22 hallmark hallmark JJ cord-010027-r0tl01kq 115 23 feature feature NN cord-010027-r0tl01kq 115 24 . . . cord-010027-r0tl01kq 116 1 The the DT cord-010027-r0tl01kq 116 2 development development NN cord-010027-r0tl01kq 116 3 of of IN cord-010027-r0tl01kq 116 4 diversion diversion NN cord-010027-r0tl01kq 116 5 colitis colitis NN cord-010027-r0tl01kq 116 6 is be VBZ cord-010027-r0tl01kq 116 7 attributed attribute VBN cord-010027-r0tl01kq 116 8 to to IN cord-010027-r0tl01kq 116 9 a a DT cord-010027-r0tl01kq 116 10 lack lack NN cord-010027-r0tl01kq 116 11 of of IN cord-010027-r0tl01kq 116 12 short short JJ cord-010027-r0tl01kq 116 13 chain chain NN cord-010027-r0tl01kq 116 14 fatty fatty JJ cord-010027-r0tl01kq 116 15 acids acid NNS cord-010027-r0tl01kq 116 16 . . . cord-010027-r0tl01kq 117 1 Eosinophilic eosinophilic JJ cord-010027-r0tl01kq 117 2 colitis colitis NN cord-010027-r0tl01kq 117 3 is be VBZ cord-010027-r0tl01kq 117 4 etiologically etiologically RB cord-010027-r0tl01kq 117 5 obscure obscure JJ cord-010027-r0tl01kq 117 6 and and CC cord-010027-r0tl01kq 117 7 can can MD cord-010027-r0tl01kq 117 8 be be VB cord-010027-r0tl01kq 117 9 associated associate VBN cord-010027-r0tl01kq 117 10 with with IN cord-010027-r0tl01kq 117 11 involvement involvement NN cord-010027-r0tl01kq 117 12 of of IN cord-010027-r0tl01kq 117 13 other other JJ cord-010027-r0tl01kq 117 14 sections section NNS cord-010027-r0tl01kq 117 15 of of IN cord-010027-r0tl01kq 117 16 the the DT cord-010027-r0tl01kq 117 17 gastrointestinal gastrointestinal JJ cord-010027-r0tl01kq 117 18 tract tract NN cord-010027-r0tl01kq 117 19 . . . cord-010027-r0tl01kq 118 1 An an DT cord-010027-r0tl01kq 118 2 infiltrate infiltrate NN cord-010027-r0tl01kq 118 3 of of IN cord-010027-r0tl01kq 118 4 eosinophilic eosinophilic JJ cord-010027-r0tl01kq 118 5 granulocytes granulocyte NNS cord-010027-r0tl01kq 118 6 is be VBZ cord-010027-r0tl01kq 118 7 found find VBN cord-010027-r0tl01kq 118 8 to to IN cord-010027-r0tl01kq 118 9 varying vary VBG cord-010027-r0tl01kq 118 10 degrees degree NNS cord-010027-r0tl01kq 118 11 in in IN cord-010027-r0tl01kq 118 12 all all DT cord-010027-r0tl01kq 118 13 wall wall NN cord-010027-r0tl01kq 118 14 layers layer NNS cord-010027-r0tl01kq 118 15 . . . cord-010027-r0tl01kq 119 1 A a DT cord-010027-r0tl01kq 119 2 history history NN cord-010027-r0tl01kq 119 3 of of IN cord-010027-r0tl01kq 119 4 food food NN cord-010027-r0tl01kq 119 5 intolerance intolerance NN cord-010027-r0tl01kq 119 6 or or CC cord-010027-r0tl01kq 119 7 allergy allergy NN cord-010027-r0tl01kq 119 8 is be VBZ cord-010027-r0tl01kq 119 9 present present JJ cord-010027-r0tl01kq 119 10 in in IN cord-010027-r0tl01kq 119 11 most most JJS cord-010027-r0tl01kq 119 12 of of IN cord-010027-r0tl01kq 119 13 the the DT cord-010027-r0tl01kq 119 14 patients patient NNS cord-010027-r0tl01kq 119 15 , , , cord-010027-r0tl01kq 119 16 and and CC cord-010027-r0tl01kq 119 17 peripheral peripheral JJ cord-010027-r0tl01kq 119 18 eosinophilia eosinophilia NN cord-010027-r0tl01kq 119 19 is be VBZ cord-010027-r0tl01kq 119 20 present present JJ cord-010027-r0tl01kq 119 21 in in IN cord-010027-r0tl01kq 119 22 80 80 CD cord-010027-r0tl01kq 119 23 % % NN cord-010027-r0tl01kq 119 24 of of IN cord-010027-r0tl01kq 119 25 cases case NNS cord-010027-r0tl01kq 119 26 . . . cord-010027-r0tl01kq 120 1 Gastrointestinal gastrointestinal JJ cord-010027-r0tl01kq 120 2 involvement involvement NN cord-010027-r0tl01kq 120 3 has have VBZ cord-010027-r0tl01kq 120 4 been be VBN cord-010027-r0tl01kq 120 5 reported report VBN cord-010027-r0tl01kq 120 6 in in IN cord-010027-r0tl01kq 120 7 up up IN cord-010027-r0tl01kq 120 8 to to TO cord-010027-r0tl01kq 120 9 25 25 CD cord-010027-r0tl01kq 120 10 % % NN cord-010027-r0tl01kq 120 11 of of IN cord-010027-r0tl01kq 120 12 patients patient NNS cord-010027-r0tl01kq 120 13 with with IN cord-010027-r0tl01kq 120 14 Behcet Behcet NNP cord-010027-r0tl01kq 120 15 's 's POS cord-010027-r0tl01kq 120 16 disease disease NN cord-010027-r0tl01kq 120 17 . . . cord-010027-r0tl01kq 121 1 In in IN cord-010027-r0tl01kq 121 2 cases case NNS cord-010027-r0tl01kq 121 3 with with IN cord-010027-r0tl01kq 121 4 ileocolonic ileocolonic JJ cord-010027-r0tl01kq 121 5 involvement involvement NN cord-010027-r0tl01kq 121 6 , , , cord-010027-r0tl01kq 121 7 it -PRON- PRP cord-010027-r0tl01kq 121 8 is be VBZ cord-010027-r0tl01kq 121 9 often often RB cord-010027-r0tl01kq 121 10 difficult difficult JJ cord-010027-r0tl01kq 121 11 to to TO cord-010027-r0tl01kq 121 12 distinguish distinguish VB cord-010027-r0tl01kq 121 13 Behcet Behcet NNP cord-010027-r0tl01kq 121 14 's 's POS cord-010027-r0tl01kq 121 15 disease disease NN cord-010027-r0tl01kq 121 16 from from IN cord-010027-r0tl01kq 121 17 other other JJ cord-010027-r0tl01kq 121 18 inflammatory inflammatory JJ cord-010027-r0tl01kq 121 19 bowel bowel NN cord-010027-r0tl01kq 121 20 diseases disease NNS cord-010027-r0tl01kq 121 21 . . . cord-010027-r0tl01kq 122 1 The the DT cord-010027-r0tl01kq 122 2 diagnosis diagnosis NN cord-010027-r0tl01kq 122 3 , , , cord-010027-r0tl01kq 122 4 therefore therefore RB cord-010027-r0tl01kq 122 5 , , , cord-010027-r0tl01kq 122 6 often often RB cord-010027-r0tl01kq 122 7 depends depend VBZ cord-010027-r0tl01kq 122 8 on on IN cord-010027-r0tl01kq 122 9 clinical clinical JJ cord-010027-r0tl01kq 122 10 manifestations manifestation NNS cord-010027-r0tl01kq 122 11 and and CC cord-010027-r0tl01kq 122 12 intestinal intestinal JJ cord-010027-r0tl01kq 122 13 ulcerative ulcerative JJ cord-010027-r0tl01kq 122 14 lesions lesion NNS cord-010027-r0tl01kq 122 15 . . . cord-010027-r0tl01kq 123 1 S·8 S·8 NNP cord-010027-r0tl01kq 123 2   . cord-010027-r0tl01kq 124 1 How how WRB cord-010027-r0tl01kq 124 2 to to TO cord-010027-r0tl01kq 124 3 Write write VB cord-010027-r0tl01kq 124 4 a a DT cord-010027-r0tl01kq 124 5 Paper paper NN cord-010027-r0tl01kq 124 6 and and CC cord-010027-r0tl01kq 124 7 Get get VB cord-010027-r0tl01kq 124 8 it -PRON- PRP cord-010027-r0tl01kq 124 9 Published published JJ cord-010027-r0tl01kq 124 10 P p NN cord-010027-r0tl01kq 124 11 CS CS NNP cord-010027-r0tl01kq 124 12 Herrington Herrington NNP cord-010027-r0tl01kq 124 13 1 1 CD cord-010027-r0tl01kq 124 14 ; ; : cord-010027-r0tl01kq 124 15 P p NN cord-010027-r0tl01kq 124 16 DM dm NN cord-010027-r0tl01kq 124 17 Berney Berney NNP cord-010027-r0tl01kq 124 18 2 2 CD cord-010027-r0tl01kq 124 19 1 1 CD cord-010027-r0tl01kq 124 20 University University NNP cord-010027-r0tl01kq 124 21 of of IN cord-010027-r0tl01kq 124 22 Edinburgh Edinburgh NNP cord-010027-r0tl01kq 124 23 , , , cord-010027-r0tl01kq 124 24 Edinburgh Edinburgh NNP cord-010027-r0tl01kq 124 25 , , , cord-010027-r0tl01kq 124 26 UK UK NNP cord-010027-r0tl01kq 124 27 ; ; : cord-010027-r0tl01kq 124 28 2 2 CD cord-010027-r0tl01kq 124 29 Barts Barts NNPS cord-010027-r0tl01kq 124 30 Health Health NNP cord-010027-r0tl01kq 124 31 NHS NHS NNP cord-010027-r0tl01kq 124 32 Trust Trust NNP cord-010027-r0tl01kq 124 33 , , , cord-010027-r0tl01kq 124 34 London London NNP cord-010027-r0tl01kq 124 35 , , , cord-010027-r0tl01kq 124 36 UK UK NNP cord-010027-r0tl01kq 124 37 Scientific scientific JJ cord-010027-r0tl01kq 124 38 papers paper NNS cord-010027-r0tl01kq 124 39 have have VBP cord-010027-r0tl01kq 124 40 a a DT cord-010027-r0tl01kq 124 41 predetermined predetermine VBN cord-010027-r0tl01kq 124 42 structure structure NN cord-010027-r0tl01kq 124 43 , , , cord-010027-r0tl01kq 124 44 and and CC cord-010027-r0tl01kq 124 45 writing write VBG cord-010027-r0tl01kq 124 46 in in IN cord-010027-r0tl01kq 124 47 this this DT cord-010027-r0tl01kq 124 48 way way NN cord-010027-r0tl01kq 124 49 requires require VBZ cord-010027-r0tl01kq 124 50 practice practice NN cord-010027-r0tl01kq 124 51 . . . cord-010027-r0tl01kq 125 1 Most Most JJS cord-010027-r0tl01kq 125 2 Journals journal NNS cord-010027-r0tl01kq 125 3 accept accept VBP cord-010027-r0tl01kq 125 4 only only RB cord-010027-r0tl01kq 125 5 a a DT cord-010027-r0tl01kq 125 6 small small JJ cord-010027-r0tl01kq 125 7 fraction fraction NN cord-010027-r0tl01kq 125 8 of of IN cord-010027-r0tl01kq 125 9 submitted submit VBN cord-010027-r0tl01kq 125 10 papers paper NNS cord-010027-r0tl01kq 125 11 and and CC cord-010027-r0tl01kq 125 12 it -PRON- PRP cord-010027-r0tl01kq 125 13 is be VBZ cord-010027-r0tl01kq 125 14 important important JJ cord-010027-r0tl01kq 125 15 that that IN cord-010027-r0tl01kq 125 16 any any DT cord-010027-r0tl01kq 125 17 paper paper NN cord-010027-r0tl01kq 125 18 has have VBZ cord-010027-r0tl01kq 125 19 something something NN cord-010027-r0tl01kq 125 20 specific specific JJ cord-010027-r0tl01kq 125 21 to to TO cord-010027-r0tl01kq 125 22 say say VB cord-010027-r0tl01kq 125 23 ; ; : cord-010027-r0tl01kq 125 24 and and CC cord-010027-r0tl01kq 125 25 says say VBZ cord-010027-r0tl01kq 125 26 it -PRON- PRP cord-010027-r0tl01kq 125 27 in in IN cord-010027-r0tl01kq 125 28 a a DT cord-010027-r0tl01kq 125 29 clear clear JJ cord-010027-r0tl01kq 125 30 and and CC cord-010027-r0tl01kq 125 31 concise concise JJ cord-010027-r0tl01kq 125 32 way way NN cord-010027-r0tl01kq 125 33 that that WDT cord-010027-r0tl01kq 125 34 can can MD cord-010027-r0tl01kq 125 35 be be VB cord-010027-r0tl01kq 125 36 understood understand VBN cord-010027-r0tl01kq 125 37 by by IN cord-010027-r0tl01kq 125 38 editors editor NNS cord-010027-r0tl01kq 125 39 , , , cord-010027-r0tl01kq 125 40 reviewers reviewer NNS cord-010027-r0tl01kq 125 41 and and CC cord-010027-r0tl01kq 125 42 readers reader NNS cord-010027-r0tl01kq 125 43 , , , cord-010027-r0tl01kq 125 44 all all DT cord-010027-r0tl01kq 125 45 of of IN cord-010027-r0tl01kq 125 46 whom whom WP cord-010027-r0tl01kq 125 47 play play VBP cord-010027-r0tl01kq 125 48 a a DT cord-010027-r0tl01kq 125 49 role role NN cord-010027-r0tl01kq 125 50 in in IN cord-010027-r0tl01kq 125 51 assessment assessment NN cord-010027-r0tl01kq 125 52 of of IN cord-010027-r0tl01kq 125 53 its -PRON- PRP$ cord-010027-r0tl01kq 125 54 contribution contribution NN cord-010027-r0tl01kq 125 55 . . . cord-010027-r0tl01kq 126 1 Editors editor NNS cord-010027-r0tl01kq 126 2 look look VBP cord-010027-r0tl01kq 126 3 for for IN cord-010027-r0tl01kq 126 4 novelty novelty NN cord-010027-r0tl01kq 126 5 and and CC cord-010027-r0tl01kq 126 6 significance significance NN cord-010027-r0tl01kq 126 7 in in IN cord-010027-r0tl01kq 126 8 the the DT cord-010027-r0tl01kq 126 9 context context NN cord-010027-r0tl01kq 126 10 of of IN cord-010027-r0tl01kq 126 11 the the DT cord-010027-r0tl01kq 126 12 aims aim NNS cord-010027-r0tl01kq 126 13 and and CC cord-010027-r0tl01kq 126 14 scope scope NN cord-010027-r0tl01kq 126 15 of of IN cord-010027-r0tl01kq 126 16 their -PRON- PRP$ cord-010027-r0tl01kq 126 17 Journal Journal NNP cord-010027-r0tl01kq 126 18 ; ; , cord-010027-r0tl01kq 126 19 and and CC cord-010027-r0tl01kq 126 20 scientific scientific JJ cord-010027-r0tl01kq 126 21 rigour rigour NN cord-010027-r0tl01kq 126 22 , , , cord-010027-r0tl01kq 126 23 which which WDT cord-010027-r0tl01kq 126 24 expert expert NN cord-010027-r0tl01kq 126 25 reviewers reviewer NNS cord-010027-r0tl01kq 126 26 help help VBP cord-010027-r0tl01kq 126 27 them -PRON- PRP cord-010027-r0tl01kq 126 28 to to TO cord-010027-r0tl01kq 126 29 assess assess VB cord-010027-r0tl01kq 126 30 . . . cord-010027-r0tl01kq 127 1 Writing write VBG cord-010027-r0tl01kq 127 2 a a DT cord-010027-r0tl01kq 127 3 paper paper NN cord-010027-r0tl01kq 127 4 and and CC cord-010027-r0tl01kq 127 5 having have VBG cord-010027-r0tl01kq 127 6 it -PRON- PRP cord-010027-r0tl01kq 127 7 assessed assess VBN cord-010027-r0tl01kq 127 8 by by IN cord-010027-r0tl01kq 127 9 a a DT cord-010027-r0tl01kq 127 10 Journal Journal NNP cord-010027-r0tl01kq 127 11 is be VBZ cord-010027-r0tl01kq 127 12 an an DT cord-010027-r0tl01kq 127 13 iterative iterative JJ cord-010027-r0tl01kq 127 14 process process NN cord-010027-r0tl01kq 127 15 . . . cord-010027-r0tl01kq 128 1 During during IN cord-010027-r0tl01kq 128 2 the the DT cord-010027-r0tl01kq 128 3 writing writing NN cord-010027-r0tl01kq 128 4 phase phase NN cord-010027-r0tl01kq 128 5 , , , cord-010027-r0tl01kq 128 6 the the DT cord-010027-r0tl01kq 128 7 scientific scientific JJ cord-010027-r0tl01kq 128 8 rigour rigour NN cord-010027-r0tl01kq 128 9 of of IN cord-010027-r0tl01kq 128 10 the the DT cord-010027-r0tl01kq 128 11 argument argument NN cord-010027-r0tl01kq 128 12 can can MD cord-010027-r0tl01kq 128 13 be be VB cord-010027-r0tl01kq 128 14 refined refine VBN cord-010027-r0tl01kq 128 15 ; ; : cord-010027-r0tl01kq 128 16 and and CC cord-010027-r0tl01kq 128 17 following follow VBG cord-010027-r0tl01kq 128 18 submission submission NN cord-010027-r0tl01kq 128 19 and and CC cord-010027-r0tl01kq 128 20 peer peer NN cord-010027-r0tl01kq 128 21 review review NN cord-010027-r0tl01kq 128 22 , , , cord-010027-r0tl01kq 128 23 reviewers reviewer NNS cord-010027-r0tl01kq 128 24 and and CC cord-010027-r0tl01kq 128 25 editors editor NNS cord-010027-r0tl01kq 128 26 often often RB cord-010027-r0tl01kq 128 27 make make VBP cord-010027-r0tl01kq 128 28 constructive constructive JJ cord-010027-r0tl01kq 128 29 comments comment NNS cord-010027-r0tl01kq 128 30 that that WDT cord-010027-r0tl01kq 128 31 help help VBP cord-010027-r0tl01kq 128 32 to to TO cord-010027-r0tl01kq 128 33 improve improve VB cord-010027-r0tl01kq 128 34 it -PRON- PRP cord-010027-r0tl01kq 128 35 still still RB cord-010027-r0tl01kq 128 36 further further RB cord-010027-r0tl01kq 128 37 . . . cord-010027-r0tl01kq 129 1 The the DT cord-010027-r0tl01kq 129 2 peer peer NN cord-010027-r0tl01kq 129 3 review review NN cord-010027-r0tl01kq 129 4 process process NN cord-010027-r0tl01kq 129 5 therefore therefore RB cord-010027-r0tl01kq 129 6 acts act VBZ cord-010027-r0tl01kq 129 7 not not RB cord-010027-r0tl01kq 129 8 only only RB cord-010027-r0tl01kq 129 9 as as IN cord-010027-r0tl01kq 129 10 a a DT cord-010027-r0tl01kq 129 11 quality quality NN cord-010027-r0tl01kq 129 12 filter filter NN cord-010027-r0tl01kq 129 13 but but CC cord-010027-r0tl01kq 129 14 also also RB cord-010027-r0tl01kq 129 15 as as IN cord-010027-r0tl01kq 129 16 a a DT cord-010027-r0tl01kq 129 17 mechanism mechanism NN cord-010027-r0tl01kq 129 18 for for IN cord-010027-r0tl01kq 129 19 quality quality NN cord-010027-r0tl01kq 129 20 improvement improvement NN cord-010027-r0tl01kq 129 21 . . . cord-010027-r0tl01kq 130 1 Writing writing NN cord-010027-r0tl01kq 130 2 papers paper NNS cord-010027-r0tl01kq 130 3 and and CC cord-010027-r0tl01kq 130 4 submitting submit VBG cord-010027-r0tl01kq 130 5 them -PRON- PRP cord-010027-r0tl01kq 130 6 for for IN cord-010027-r0tl01kq 130 7 publication publication NN cord-010027-r0tl01kq 130 8 is be VBZ cord-010027-r0tl01kq 130 9 therefore therefore RB cord-010027-r0tl01kq 130 10 generally generally RB cord-010027-r0tl01kq 130 11 a a DT cord-010027-r0tl01kq 130 12 positive positive JJ cord-010027-r0tl01kq 130 13 experience experience NN cord-010027-r0tl01kq 130 14 , , , cord-010027-r0tl01kq 130 15 particularly particularly RB cord-010027-r0tl01kq 130 16 if if IN cord-010027-r0tl01kq 130 17 one one CD cord-010027-r0tl01kq 130 18 remembers remember VBZ cord-010027-r0tl01kq 130 19 that that IN cord-010027-r0tl01kq 130 20 the the DT cord-010027-r0tl01kq 130 21 process process NN cord-010027-r0tl01kq 130 22 is be VBZ cord-010027-r0tl01kq 130 23 iterative iterative JJ cord-010027-r0tl01kq 130 24 and and CC cord-010027-r0tl01kq 130 25 ( ( -LRB- cord-010027-r0tl01kq 130 26 inevitably inevitably RB cord-010027-r0tl01kq 130 27 ) ) -RRB- cord-010027-r0tl01kq 130 28 not not RB cord-010027-r0tl01kq 130 29 all all DT cord-010027-r0tl01kq 130 30 papers paper NNS cord-010027-r0tl01kq 130 31 will will MD cord-010027-r0tl01kq 130 32 be be VB cord-010027-r0tl01kq 130 33 accepted accept VBN cord-010027-r0tl01kq 130 34 for for IN cord-010027-r0tl01kq 130 35 publication publication NN cord-010027-r0tl01kq 130 36 by by IN cord-010027-r0tl01kq 130 37 the the DT cord-010027-r0tl01kq 130 38 first first JJ cord-010027-r0tl01kq 130 39 Journal Journal NNP cord-010027-r0tl01kq 130 40 that that IN cord-010027-r0tl01kq 130 41 they -PRON- PRP cord-010027-r0tl01kq 130 42 are be VBP cord-010027-r0tl01kq 130 43 sent send VBN cord-010027-r0tl01kq 130 44 to to IN cord-010027-r0tl01kq 130 45 . . . cord-010027-r0tl01kq 131 1   NFP cord-010027-r0tl01kq 131 2 Large large JJ cord-010027-r0tl01kq 131 3 - - HYPH cord-010027-r0tl01kq 131 4 Scale scale NN cord-010027-r0tl01kq 131 5 Routine Routine NNP cord-010027-r0tl01kq 131 6 Diagnostics diagnostic NNS cord-010027-r0tl01kq 131 7 Using use VBG cord-010027-r0tl01kq 131 8 Whole Whole NNP cord-010027-r0tl01kq 131 9 - - HYPH cord-010027-r0tl01kq 131 10 Slide slide NN cord-010027-r0tl01kq 131 11 Imaging Imaging NNP cord-010027-r0tl01kq 131 12 in in IN cord-010027-r0tl01kq 131 13 Sweden Sweden NNP cord-010027-r0tl01kq 132 1 -the -the NFP cord-010027-r0tl01kq 133 1 Linköping linköpe VBG cord-010027-r0tl01kq 133 2 Experience experience NN cord-010027-r0tl01kq 134 1 P p NN cord-010027-r0tl01kq 134 2 C c NN cord-010027-r0tl01kq 134 3 Lundström Lundström NNP cord-010027-r0tl01kq 134 4 CMIV CMIV NNP cord-010027-r0tl01kq 134 5 , , , cord-010027-r0tl01kq 134 6 Linköping Linköping NNP cord-010027-r0tl01kq 134 7 University University NNP cord-010027-r0tl01kq 134 8 , , , cord-010027-r0tl01kq 134 9 Linköping Linköping NNP cord-010027-r0tl01kq 134 10 , , , cord-010027-r0tl01kq 134 11 Sweden Sweden NNP cord-010027-r0tl01kq 134 12 This this DT cord-010027-r0tl01kq 134 13 presentation presentation NN cord-010027-r0tl01kq 134 14 will will MD cord-010027-r0tl01kq 134 15 describe describe VB cord-010027-r0tl01kq 134 16 the the DT cord-010027-r0tl01kq 134 17 large large JJ cord-010027-r0tl01kq 134 18 - - HYPH cord-010027-r0tl01kq 134 19 scale scale NN cord-010027-r0tl01kq 134 20 routine routine JJ cord-010027-r0tl01kq 134 21 usage usage NN cord-010027-r0tl01kq 134 22 of of IN cord-010027-r0tl01kq 134 23 WSI WSI NNP cord-010027-r0tl01kq 134 24 at at IN cord-010027-r0tl01kq 134 25 Linköping Linköping NNP cord-010027-r0tl01kq 134 26 University University NNP cord-010027-r0tl01kq 134 27 Hospital Hospital NNP cord-010027-r0tl01kq 134 28 , , , cord-010027-r0tl01kq 134 29 Sweden Sweden NNP cord-010027-r0tl01kq 134 30 . . . cord-010027-r0tl01kq 135 1 Since since IN cord-010027-r0tl01kq 135 2 2011 2011 CD cord-010027-r0tl01kq 135 3 all all DT cord-010027-r0tl01kq 135 4 histology histology NN cord-010027-r0tl01kq 135 5 slides slide NNS cord-010027-r0tl01kq 135 6 are be VBP cord-010027-r0tl01kq 135 7 scanned scan VBN cord-010027-r0tl01kq 135 8 , , , cord-010027-r0tl01kq 135 9 amounting amount VBG cord-010027-r0tl01kq 135 10 to to IN cord-010027-r0tl01kq 135 11 more more JJR cord-010027-r0tl01kq 135 12 than than IN cord-010027-r0tl01kq 135 13 half half PDT cord-010027-r0tl01kq 135 14 a a DT cord-010027-r0tl01kq 135 15 million million CD cord-010027-r0tl01kq 135 16 slides slide NNS cord-010027-r0tl01kq 135 17 to to IN cord-010027-r0tl01kq 135 18 date date NN cord-010027-r0tl01kq 135 19 . . . cord-010027-r0tl01kq 136 1 To to IN cord-010027-r0tl01kq 136 2 a a DT cord-010027-r0tl01kq 136 3 significant significant JJ cord-010027-r0tl01kq 136 4 extent extent NN cord-010027-r0tl01kq 136 5 the the DT cord-010027-r0tl01kq 136 6 digital digital JJ cord-010027-r0tl01kq 136 7 images image NNS cord-010027-r0tl01kq 136 8 are be VBP cord-010027-r0tl01kq 136 9 used use VBN cord-010027-r0tl01kq 136 10 for for IN cord-010027-r0tl01kq 136 11 primary primary JJ cord-010027-r0tl01kq 136 12 review review NN cord-010027-r0tl01kq 136 13 . . . cord-010027-r0tl01kq 137 1 The the DT cord-010027-r0tl01kq 137 2 initial initial JJ cord-010027-r0tl01kq 137 3 implementation implementation NN cord-010027-r0tl01kq 137 4 led lead VBD cord-010027-r0tl01kq 137 5 to to IN cord-010027-r0tl01kq 137 6 several several JJ cord-010027-r0tl01kq 137 7 of of IN cord-010027-r0tl01kq 137 8 the the DT cord-010027-r0tl01kq 137 9 benefits benefit NNS cord-010027-r0tl01kq 137 10 foreseen foresee VBN cord-010027-r0tl01kq 137 11 with with IN cord-010027-r0tl01kq 137 12 digital digital JJ cord-010027-r0tl01kq 137 13 pathology pathology NN cord-010027-r0tl01kq 137 14 , , , cord-010027-r0tl01kq 137 15 but but CC cord-010027-r0tl01kq 137 16 it -PRON- PRP cord-010027-r0tl01kq 137 17 could could MD cord-010027-r0tl01kq 137 18 also also RB cord-010027-r0tl01kq 137 19 be be VB cord-010027-r0tl01kq 137 20 concluded conclude VBN cord-010027-r0tl01kq 137 21 that that IN cord-010027-r0tl01kq 137 22 further further JJ cord-010027-r0tl01kq 137 23 development development NN cord-010027-r0tl01kq 137 24 was be VBD cord-010027-r0tl01kq 137 25 needed need VBN cord-010027-r0tl01kq 137 26 to to TO cord-010027-r0tl01kq 137 27 unlock unlock VB cord-010027-r0tl01kq 137 28 the the DT cord-010027-r0tl01kq 137 29 full full JJ cord-010027-r0tl01kq 137 30 potential potential NN cord-010027-r0tl01kq 137 31 , , , cord-010027-r0tl01kq 137 32 in in IN cord-010027-r0tl01kq 137 33 particular particular JJ cord-010027-r0tl01kq 137 34 within within IN cord-010027-r0tl01kq 137 35 the the DT cord-010027-r0tl01kq 137 36 IT IT NNP cord-010027-r0tl01kq 137 37 solutions solution NNS cord-010027-r0tl01kq 137 38 . . . cord-010027-r0tl01kq 138 1 Therefore therefore RB cord-010027-r0tl01kq 138 2 , , , cord-010027-r0tl01kq 138 3 a a DT cord-010027-r0tl01kq 138 4 consortium consortium NN cord-010027-r0tl01kq 138 5 led lead VBN cord-010027-r0tl01kq 138 6 by by IN cord-010027-r0tl01kq 138 7 CMIV CMIV NNP cord-010027-r0tl01kq 138 8 , , , cord-010027-r0tl01kq 138 9 Linköping Linköping NNP cord-010027-r0tl01kq 138 10 University University NNP cord-010027-r0tl01kq 138 11 was be VBD cord-010027-r0tl01kq 138 12 formed form VBN cord-010027-r0tl01kq 138 13 in in IN cord-010027-r0tl01kq 138 14 2012 2012 CD cord-010027-r0tl01kq 138 15 to to TO cord-010027-r0tl01kq 138 16 create create VB cord-010027-r0tl01kq 138 17 innovations innovation NNS cord-010027-r0tl01kq 138 18 for for IN cord-010027-r0tl01kq 138 19 a a DT cord-010027-r0tl01kq 138 20 new new JJ cord-010027-r0tl01kq 138 21 generation generation NN cord-010027-r0tl01kq 138 22 of of IN cord-010027-r0tl01kq 138 23 digital digital JJ cord-010027-r0tl01kq 138 24 pathology pathology NN cord-010027-r0tl01kq 138 25 . . . cord-010027-r0tl01kq 139 1 This this DT cord-010027-r0tl01kq 139 2 triple triple JJ cord-010027-r0tl01kq 139 3 helix helix NN cord-010027-r0tl01kq 139 4 consortium consortium NN cord-010027-r0tl01kq 139 5 also also RB cord-010027-r0tl01kq 139 6 includes include VBZ cord-010027-r0tl01kq 139 7 industry industry NN cord-010027-r0tl01kq 139 8 and and CC cord-010027-r0tl01kq 139 9 more more JJR cord-010027-r0tl01kq 139 10 than than IN cord-010027-r0tl01kq 139 11 half half NN cord-010027-r0tl01kq 139 12 of of IN cord-010027-r0tl01kq 139 13 Sweden Sweden NNP cord-010027-r0tl01kq 139 14 's 's POS cord-010027-r0tl01kq 139 15 health health NN cord-010027-r0tl01kq 139 16 care care NN cord-010027-r0tl01kq 139 17 providers provider NNS cord-010027-r0tl01kq 139 18 , , , cord-010027-r0tl01kq 139 19 an an DT cord-010027-r0tl01kq 139 20 engagement engagement NN cord-010027-r0tl01kq 139 21 that that WDT cord-010027-r0tl01kq 139 22 reflects reflect VBZ cord-010027-r0tl01kq 139 23 the the DT cord-010027-r0tl01kq 139 24 dominating dominating JJ cord-010027-r0tl01kq 139 25 view view NN cord-010027-r0tl01kq 139 26 in in IN cord-010027-r0tl01kq 139 27 Swedish swedish JJ cord-010027-r0tl01kq 139 28 pathology pathology NN cord-010027-r0tl01kq 139 29 that that IN cord-010027-r0tl01kq 139 30 large large JJ cord-010027-r0tl01kq 139 31 - - HYPH cord-010027-r0tl01kq 139 32 scale scale NN cord-010027-r0tl01kq 139 33 adoption adoption NN cord-010027-r0tl01kq 139 34 of of IN cord-010027-r0tl01kq 139 35 WSI wsi JJ cord-010027-r0tl01kq 139 36 practice practice NN cord-010027-r0tl01kq 139 37 is be VBZ cord-010027-r0tl01kq 139 38 possible possible JJ cord-010027-r0tl01kq 139 39 and and CC cord-010027-r0tl01kq 139 40 desirable desirable JJ cord-010027-r0tl01kq 139 41 . . . cord-010027-r0tl01kq 140 1 This this DT cord-010027-r0tl01kq 140 2 talk talk NN cord-010027-r0tl01kq 140 3 covers cover VBZ cord-010027-r0tl01kq 140 4 the the DT cord-010027-r0tl01kq 140 5 experiences experience NNS cord-010027-r0tl01kq 140 6 made make VBN cord-010027-r0tl01kq 140 7 during during IN cord-010027-r0tl01kq 140 8 the the DT cord-010027-r0tl01kq 140 9 initial initial JJ cord-010027-r0tl01kq 140 10 digitization digitization NN cord-010027-r0tl01kq 140 11 , , , cord-010027-r0tl01kq 140 12 including include VBG cord-010027-r0tl01kq 140 13 laboratory laboratory NN cord-010027-r0tl01kq 140 14 process process NN cord-010027-r0tl01kq 140 15 adjustments adjustment NNS cord-010027-r0tl01kq 140 16 , , , cord-010027-r0tl01kq 140 17 and and CC cord-010027-r0tl01kq 140 18 the the DT cord-010027-r0tl01kq 140 19 later later JJ cord-010027-r0tl01kq 140 20 additions addition NNS cord-010027-r0tl01kq 140 21 to to IN cord-010027-r0tl01kq 140 22 the the DT cord-010027-r0tl01kq 140 23 digital digital JJ cord-010027-r0tl01kq 140 24 pathology pathology NN cord-010027-r0tl01kq 140 25 toolbox toolbox NN cord-010027-r0tl01kq 140 26 accomplished accomplish VBN cord-010027-r0tl01kq 140 27 by by IN cord-010027-r0tl01kq 140 28 the the DT cord-010027-r0tl01kq 140 29 ongoing ongoing JJ cord-010027-r0tl01kq 140 30 innovation innovation NN cord-010027-r0tl01kq 140 31 project project NN cord-010027-r0tl01kq 140 32 . . . cord-010027-r0tl01kq 141 1 Apart apart RB cord-010027-r0tl01kq 141 2 from from IN cord-010027-r0tl01kq 141 3 obvious obvious JJ cord-010027-r0tl01kq 141 4 targets target NNS cord-010027-r0tl01kq 141 5 such such JJ cord-010027-r0tl01kq 141 6 as as IN cord-010027-r0tl01kq 141 7 the the DT cord-010027-r0tl01kq 141 8 pathologists pathologist NNS cord-010027-r0tl01kq 141 9 ' ' POS cord-010027-r0tl01kq 141 10 workstation workstation NN cord-010027-r0tl01kq 141 11 , , , cord-010027-r0tl01kq 141 12 the the DT cord-010027-r0tl01kq 141 13 developments development NNS cord-010027-r0tl01kq 141 14 also also RB cord-010027-r0tl01kq 141 15 touch touch VBP cord-010027-r0tl01kq 141 16 upon upon IN cord-010027-r0tl01kq 141 17 other other JJ cord-010027-r0tl01kq 141 18 areas area NNS cord-010027-r0tl01kq 141 19 including include VBG cord-010027-r0tl01kq 141 20 grossing gross VBG cord-010027-r0tl01kq 141 21 and and CC cord-010027-r0tl01kq 141 22 enterprise enterprise NN cord-010027-r0tl01kq 141 23 image image NN cord-010027-r0tl01kq 141 24 management management NN cord-010027-r0tl01kq 141 25 . . . cord-010027-r0tl01kq 142 1   . cord-010027-r0tl01kq 143 1 Digital Digital NNP cord-010027-r0tl01kq 143 2 Pathology Pathology NNP cord-010027-r0tl01kq 144 1 -Are -Are : cord-010027-r0tl01kq 145 1 We -PRON- PRP cord-010027-r0tl01kq 145 2 There there RB cord-010027-r0tl01kq 146 1 Yet yet RB cord-010027-r0tl01kq 146 2 ? ? . cord-010027-r0tl01kq 147 1 P p NN cord-010027-r0tl01kq 147 2 SM SM NNP cord-010027-r0tl01kq 147 3 Hewitt Hewitt NNP cord-010027-r0tl01kq 147 4 National National NNP cord-010027-r0tl01kq 147 5 Cancer Cancer NNP cord-010027-r0tl01kq 147 6 Institute Institute NNP cord-010027-r0tl01kq 147 7 , , , cord-010027-r0tl01kq 147 8 Bethesda Bethesda NNP cord-010027-r0tl01kq 147 9 , , , cord-010027-r0tl01kq 147 10 Maryland Maryland NNP cord-010027-r0tl01kq 147 11 , , , cord-010027-r0tl01kq 147 12 USA USA NNP cord-010027-r0tl01kq 148 1 The the DT cord-010027-r0tl01kq 148 2 implementation implementation NN cord-010027-r0tl01kq 148 3 of of IN cord-010027-r0tl01kq 148 4 whole whole JJ cord-010027-r0tl01kq 148 5 slide slide NN cord-010027-r0tl01kq 148 6 imaging imaging NN cord-010027-r0tl01kq 148 7 for for IN cord-010027-r0tl01kq 148 8 diagnostic diagnostic JJ cord-010027-r0tl01kq 148 9 histopathology histopathology NN cord-010027-r0tl01kq 148 10 is be VBZ cord-010027-r0tl01kq 148 11 far far RB cord-010027-r0tl01kq 148 12 more more RBR cord-010027-r0tl01kq 148 13 complex complex JJ cord-010027-r0tl01kq 148 14 than than IN cord-010027-r0tl01kq 148 15 connecting connect VBG cord-010027-r0tl01kq 148 16 an an DT cord-010027-r0tl01kq 148 17 instrument instrument NN cord-010027-r0tl01kq 148 18 to to IN cord-010027-r0tl01kq 148 19 a a DT cord-010027-r0tl01kq 148 20 server server NN cord-010027-r0tl01kq 148 21 , , , cord-010027-r0tl01kq 148 22 and and CC cord-010027-r0tl01kq 148 23 placing place VBG cord-010027-r0tl01kq 148 24 a a DT cord-010027-r0tl01kq 148 25 computer computer NN cord-010027-r0tl01kq 148 26 on on IN cord-010027-r0tl01kq 148 27 a a DT cord-010027-r0tl01kq 148 28 pathologist pathologist NN cord-010027-r0tl01kq 148 29 's 's POS cord-010027-r0tl01kq 148 30 desk desk NN cord-010027-r0tl01kq 148 31 . . . cord-010027-r0tl01kq 149 1 The the DT cord-010027-r0tl01kq 149 2 technology technology NN cord-010027-r0tl01kq 149 3 is be VBZ cord-010027-r0tl01kq 149 4 additive additive NN cord-010027-r0tl01kq 149 5 to to IN cord-010027-r0tl01kq 149 6 the the DT cord-010027-r0tl01kq 149 7 histology histology NN cord-010027-r0tl01kq 149 8 workflow workflow NN cord-010027-r0tl01kq 149 9 , , , cord-010027-r0tl01kq 149 10 with with IN cord-010027-r0tl01kq 149 11 additional additional JJ cord-010027-r0tl01kq 149 12 cost cost NN cord-010027-r0tl01kq 149 13 beyond beyond IN cord-010027-r0tl01kq 149 14 the the DT cord-010027-r0tl01kq 149 15 current current JJ cord-010027-r0tl01kq 149 16 practice practice NN cord-010027-r0tl01kq 149 17 of of IN cord-010027-r0tl01kq 149 18 review review NN cord-010027-r0tl01kq 149 19 with with IN cord-010027-r0tl01kq 149 20 a a DT cord-010027-r0tl01kq 149 21 microscope microscope NN cord-010027-r0tl01kq 149 22 . . . cord-010027-r0tl01kq 150 1 The the DT cord-010027-r0tl01kq 150 2 adoption adoption NN cord-010027-r0tl01kq 150 3 of of IN cord-010027-r0tl01kq 150 4 Digital Digital NNP cord-010027-r0tl01kq 150 5 Pathology Pathology NNP cord-010027-r0tl01kq 150 6 for for IN cord-010027-r0tl01kq 150 7 histomorphologic histomorphologic JJ cord-010027-r0tl01kq 150 8 diagnosis diagnosis NN cord-010027-r0tl01kq 150 9 requires require VBZ cord-010027-r0tl01kq 150 10 the the DT cord-010027-r0tl01kq 150 11 restructuring restructuring NN cord-010027-r0tl01kq 150 12 of of IN cord-010027-r0tl01kq 150 13 the the DT cord-010027-r0tl01kq 150 14 workflow workflow NN cord-010027-r0tl01kq 150 15 , , , cord-010027-r0tl01kq 150 16 additional additional JJ cord-010027-r0tl01kq 150 17 technology technology NN cord-010027-r0tl01kq 150 18 advances advance VBZ cord-010027-r0tl01kq 150 19 beyond beyond IN cord-010027-r0tl01kq 150 20 the the DT cord-010027-r0tl01kq 150 21 imaging imaging NN cord-010027-r0tl01kq 150 22 instrument instrument NN cord-010027-r0tl01kq 150 23 , , , cord-010027-r0tl01kq 150 24 and and CC cord-010027-r0tl01kq 150 25 development development NN cord-010027-r0tl01kq 150 26 of of IN cord-010027-r0tl01kq 150 27 new new JJ cord-010027-r0tl01kq 150 28 tools tool NNS cord-010027-r0tl01kq 150 29 to to TO cord-010027-r0tl01kq 150 30 assist assist VB cord-010027-r0tl01kq 150 31 the the DT cord-010027-r0tl01kq 150 32 pathologist pathologist NN cord-010027-r0tl01kq 150 33 . . . cord-010027-r0tl01kq 151 1 The the DT cord-010027-r0tl01kq 151 2 end end NN cord-010027-r0tl01kq 151 3 goal goal NN cord-010027-r0tl01kq 151 4 is be VBZ cord-010027-r0tl01kq 151 5 to to TO cord-010027-r0tl01kq 151 6 improve improve VB cord-010027-r0tl01kq 151 7 pathologist pathologist NN cord-010027-r0tl01kq 151 8 's 's POS cord-010027-r0tl01kq 151 9 productivity productivity NN cord-010027-r0tl01kq 151 10 and and CC cord-010027-r0tl01kq 151 11 provide provide VB cord-010027-r0tl01kq 151 12 additional additional JJ cord-010027-r0tl01kq 151 13 diagnostic diagnostic JJ cord-010027-r0tl01kq 151 14 information information NN cord-010027-r0tl01kq 151 15 . . . cord-010027-r0tl01kq 152 1 Digital Digital NNP cord-010027-r0tl01kq 152 2 Pathology Pathology NNP cord-010027-r0tl01kq 152 3 , , , cord-010027-r0tl01kq 152 4 to to TO cord-010027-r0tl01kq 152 5 succeed succeed VB cord-010027-r0tl01kq 152 6 must must MD cord-010027-r0tl01kq 152 7 become become VB cord-010027-r0tl01kq 152 8 a a DT cord-010027-r0tl01kq 152 9 value value NN cord-010027-r0tl01kq 152 10 - - HYPH cord-010027-r0tl01kq 152 11 added add VBN cord-010027-r0tl01kq 152 12 proposition proposition NN cord-010027-r0tl01kq 152 13 . . . cord-010027-r0tl01kq 153 1 The the DT cord-010027-r0tl01kq 153 2 adoption adoption NN cord-010027-r0tl01kq 153 3 of of IN cord-010027-r0tl01kq 153 4 Digital Digital NNP cord-010027-r0tl01kq 153 5 Pathology Pathology NNP cord-010027-r0tl01kq 153 6 requires require VBZ cord-010027-r0tl01kq 153 7 : : : cord-010027-r0tl01kq 153 8 1)Improvements 1)improvements CD cord-010027-r0tl01kq 153 9 in in IN cord-010027-r0tl01kq 153 10 scanner scanner NN cord-010027-r0tl01kq 153 11 performance performance NN cord-010027-r0tl01kq 153 12 as as IN cord-010027-r0tl01kq 153 13 measured measure VBN cord-010027-r0tl01kq 153 14 by by IN cord-010027-r0tl01kq 153 15 defined define VBN cord-010027-r0tl01kq 153 16 quality quality NN cord-010027-r0tl01kq 153 17 metrics metric NNS cord-010027-r0tl01kq 153 18 . . . cord-010027-r0tl01kq 154 1 2)Advancement 2)advancement CD cord-010027-r0tl01kq 154 2 in in IN cord-010027-r0tl01kq 154 3 server server NN cord-010027-r0tl01kq 154 4 and and CC cord-010027-r0tl01kq 154 5 networks network NNS cord-010027-r0tl01kq 154 6 to to TO cord-010027-r0tl01kq 154 7 distribute distribute VB cord-010027-r0tl01kq 154 8 images image NNS cord-010027-r0tl01kq 154 9 to to IN cord-010027-r0tl01kq 154 10 the the DT cord-010027-r0tl01kq 154 11 desktop desktop NN cord-010027-r0tl01kq 154 12 efficiently efficiently RB cord-010027-r0tl01kq 154 13 . . . cord-010027-r0tl01kq 155 1 3)Software 3)software CD cord-010027-r0tl01kq 155 2 to to TO cord-010027-r0tl01kq 155 3 facilitate facilitate VB cord-010027-r0tl01kq 155 4 review review NN cord-010027-r0tl01kq 155 5 and and CC cord-010027-r0tl01kq 155 6 diagnosis diagnosis NN cord-010027-r0tl01kq 155 7 , , , cord-010027-r0tl01kq 155 8 beyond beyond IN cord-010027-r0tl01kq 155 9 presenting present VBG cord-010027-r0tl01kq 155 10 only only RB cord-010027-r0tl01kq 155 11 and and CC cord-010027-r0tl01kq 155 12 image image NN cord-010027-r0tl01kq 155 13 of of IN cord-010027-r0tl01kq 155 14 the the DT cord-010027-r0tl01kq 155 15 slide slide NN cord-010027-r0tl01kq 155 16 . . . cord-010027-r0tl01kq 156 1 Evolution evolution NN cord-010027-r0tl01kq 156 2 of of IN cord-010027-r0tl01kq 156 3 the the DT cord-010027-r0tl01kq 156 4 current current JJ cord-010027-r0tl01kq 156 5 technologies technology NNS cord-010027-r0tl01kq 156 6 is be VBZ cord-010027-r0tl01kq 156 7 required require VBN cord-010027-r0tl01kq 156 8 to to TO cord-010027-r0tl01kq 156 9 provide provide VB cord-010027-r0tl01kq 156 10 an an DT cord-010027-r0tl01kq 156 11 economic economic JJ cord-010027-r0tl01kq 156 12 impetus impetus NN cord-010027-r0tl01kq 156 13 for for IN cord-010027-r0tl01kq 156 14 widespread widespread JJ cord-010027-r0tl01kq 156 15 adoption adoption NN cord-010027-r0tl01kq 156 16 and and CC cord-010027-r0tl01kq 156 17 use use NN cord-010027-r0tl01kq 156 18 of of IN cord-010027-r0tl01kq 156 19 Digital Digital NNP cord-010027-r0tl01kq 156 20 Pathology Pathology NNP cord-010027-r0tl01kq 156 21 in in IN cord-010027-r0tl01kq 156 22 the the DT cord-010027-r0tl01kq 156 23 diagnostic diagnostic JJ cord-010027-r0tl01kq 156 24 setting setting NN cord-010027-r0tl01kq 156 25 . . . cord-010027-r0tl01kq 157 1 To to IN cord-010027-r0tl01kq 157 2 a a DT cord-010027-r0tl01kq 157 3 significant significant JJ cord-010027-r0tl01kq 157 4 extent extent NN cord-010027-r0tl01kq 157 5 , , , cord-010027-r0tl01kq 157 6 the the DT cord-010027-r0tl01kq 157 7 distinction distinction NN cord-010027-r0tl01kq 157 8 between between IN cord-010027-r0tl01kq 157 9 melanocytic melanocytic JJ cord-010027-r0tl01kq 157 10 naevi naevus NNS cord-010027-r0tl01kq 157 11 and and CC cord-010027-r0tl01kq 157 12 malignant malignant JJ cord-010027-r0tl01kq 157 13 melanomas melanoma NNS cord-010027-r0tl01kq 157 14 is be VBZ cord-010027-r0tl01kq 157 15 based base VBN cord-010027-r0tl01kq 157 16 on on IN cord-010027-r0tl01kq 157 17 tissue tissue NN cord-010027-r0tl01kq 157 18 architecture architecture NN cord-010027-r0tl01kq 157 19 . . . cord-010027-r0tl01kq 158 1 Amongst amongst IN cord-010027-r0tl01kq 158 2 the the DT cord-010027-r0tl01kq 158 3 best well RBS cord-010027-r0tl01kq 158 4 known know VBN cord-010027-r0tl01kq 158 5 architectural architectural JJ cord-010027-r0tl01kq 158 6 features feature NNS cord-010027-r0tl01kq 158 7 pointing point VBG cord-010027-r0tl01kq 158 8 to to IN cord-010027-r0tl01kq 158 9 malignancy malignancy NN cord-010027-r0tl01kq 158 10 are be VBP cord-010027-r0tl01kq 158 11 absence absence NN cord-010027-r0tl01kq 158 12 of of IN cord-010027-r0tl01kq 158 13 lesional lesional JJ cord-010027-r0tl01kq 158 14 symmetry symmetry NN cord-010027-r0tl01kq 158 15 and and CC cord-010027-r0tl01kq 158 16 maturation maturation NN cord-010027-r0tl01kq 158 17 , , , cord-010027-r0tl01kq 158 18 and and CC cord-010027-r0tl01kq 158 19 presence presence NN cord-010027-r0tl01kq 158 20 of of IN cord-010027-r0tl01kq 158 21 melanocyte melanocyte NN cord-010027-r0tl01kq 158 22 ascent ascent NN cord-010027-r0tl01kq 158 23 . . . cord-010027-r0tl01kq 159 1 However however RB cord-010027-r0tl01kq 159 2 , , , cord-010027-r0tl01kq 159 3 each each DT cord-010027-r0tl01kq 159 4 of of IN cord-010027-r0tl01kq 159 5 these these DT cord-010027-r0tl01kq 159 6 three three CD cord-010027-r0tl01kq 159 7 features feature NNS cord-010027-r0tl01kq 159 8 has have VBZ cord-010027-r0tl01kq 159 9 significant significant JJ cord-010027-r0tl01kq 159 10 pitfalls pitfall NNS cord-010027-r0tl01kq 159 11 . . . cord-010027-r0tl01kq 160 1 As as IN cord-010027-r0tl01kq 160 2 a a DT cord-010027-r0tl01kq 160 3 rule rule NN cord-010027-r0tl01kq 160 4 , , , cord-010027-r0tl01kq 160 5 naevi naevus NNS cord-010027-r0tl01kq 160 6 are be VBP cord-010027-r0tl01kq 160 7 ' ' `` cord-010027-r0tl01kq 160 8 roughly roughly RB cord-010027-r0tl01kq 160 9 symmetrical symmetrical JJ cord-010027-r0tl01kq 160 10 ' ' '' cord-010027-r0tl01kq 160 11 and and CC cord-010027-r0tl01kq 160 12 melanomas melanoma NNS cord-010027-r0tl01kq 160 13 are be VBP cord-010027-r0tl01kq 160 14 not not RB cord-010027-r0tl01kq 160 15 , , , cord-010027-r0tl01kq 160 16 but but CC cord-010027-r0tl01kq 160 17 there there EX cord-010027-r0tl01kq 160 18 are be VBP cord-010027-r0tl01kq 160 19 asymmetrical asymmetrical JJ cord-010027-r0tl01kq 160 20 naevi naevus NNS cord-010027-r0tl01kq 160 21 ( ( -LRB- cord-010027-r0tl01kq 160 22 traumatized traumatize VBN cord-010027-r0tl01kq 160 23 naevi naevus NNS cord-010027-r0tl01kq 160 24 , , , cord-010027-r0tl01kq 160 25 most most RBS cord-010027-r0tl01kq 160 26 larger large JJR cord-010027-r0tl01kq 160 27 congenital congenital JJ cord-010027-r0tl01kq 160 28 naevi naevus NNS cord-010027-r0tl01kq 160 29 ; ; : cord-010027-r0tl01kq 160 30 some some DT cord-010027-r0tl01kq 160 31 combined combine VBN cord-010027-r0tl01kq 160 32 naevi naevi NN cord-010027-r0tl01kq 160 33 ; ; : cord-010027-r0tl01kq 160 34 some some DT cord-010027-r0tl01kq 160 35 large large JJ cord-010027-r0tl01kq 160 36 acral acral JJ cord-010027-r0tl01kq 160 37 and and CC cord-010027-r0tl01kq 160 38 genital genital JJ cord-010027-r0tl01kq 160 39 naevi naevus NNS cord-010027-r0tl01kq 160 40 ) ) -RRB- cord-010027-r0tl01kq 160 41 and and CC cord-010027-r0tl01kq 160 42 symmetrical symmetrical JJ cord-010027-r0tl01kq 160 43 melanomas melanoma NNS cord-010027-r0tl01kq 160 44 ( ( -LRB- cord-010027-r0tl01kq 160 45 including include VBG cord-010027-r0tl01kq 160 46 many many JJ cord-010027-r0tl01kq 160 47 small small JJ cord-010027-r0tl01kq 160 48 melanomas melanoma NNS cord-010027-r0tl01kq 160 49 , , , cord-010027-r0tl01kq 160 50 especially especially RB cord-010027-r0tl01kq 160 51 small small JJ cord-010027-r0tl01kq 160 52 nodular nodular JJ cord-010027-r0tl01kq 160 53 melanomas melanoma NNS cord-010027-r0tl01kq 160 54 ; ; , cord-010027-r0tl01kq 160 55 some some DT cord-010027-r0tl01kq 160 56 spitzoid spitzoid FW cord-010027-r0tl01kq 160 57 melanomas melanoma NNS cord-010027-r0tl01kq 160 58 ) ) -RRB- cord-010027-r0tl01kq 160 59 . . . cord-010027-r0tl01kq 161 1 In in IN cord-010027-r0tl01kq 161 2 addition addition NN cord-010027-r0tl01kq 161 3 , , , cord-010027-r0tl01kq 161 4 it -PRON- PRP cord-010027-r0tl01kq 161 5 is be VBZ cord-010027-r0tl01kq 161 6 not not RB cord-010027-r0tl01kq 161 7 always always RB cord-010027-r0tl01kq 161 8 clear clear JJ cord-010027-r0tl01kq 161 9 whether whether IN cord-010027-r0tl01kq 161 10 a a DT cord-010027-r0tl01kq 161 11 lesion lesion NN cord-010027-r0tl01kq 161 12 should should MD cord-010027-r0tl01kq 161 13 be be VB cord-010027-r0tl01kq 161 14 considered consider VBN cord-010027-r0tl01kq 161 15 ' ' `` cord-010027-r0tl01kq 161 16 roughly roughly RB cord-010027-r0tl01kq 161 17 symmetrical symmetrical JJ cord-010027-r0tl01kq 161 18 ' ' '' cord-010027-r0tl01kq 161 19 or or CC cord-010027-r0tl01kq 161 20 not not RB cord-010027-r0tl01kq 161 21 . . . cord-010027-r0tl01kq 162 1 I -PRON- PRP cord-010027-r0tl01kq 162 2 suspect suspect VBP cord-010027-r0tl01kq 162 3 that that IN cord-010027-r0tl01kq 162 4 not not RB cord-010027-r0tl01kq 162 5 uncommonly uncommonly RB cord-010027-r0tl01kq 162 6 , , , cord-010027-r0tl01kq 162 7 a a DT cord-010027-r0tl01kq 162 8 diagnosis diagnosis NN cord-010027-r0tl01kq 162 9 is be VBZ cord-010027-r0tl01kq 162 10 reached reach VBN cord-010027-r0tl01kq 162 11 first first RB cord-010027-r0tl01kq 162 12 , , , cord-010027-r0tl01kq 162 13 and and CC cord-010027-r0tl01kq 162 14 the the DT cord-010027-r0tl01kq 162 15 verdict verdict NN cord-010027-r0tl01kq 162 16 regarding regard VBG cord-010027-r0tl01kq 162 17 symmetry symmetry NN cord-010027-r0tl01kq 162 18 is be VBZ cord-010027-r0tl01kq 162 19 adjusted adjust VBN cord-010027-r0tl01kq 162 20 according accord VBG cord-010027-r0tl01kq 162 21 to to IN cord-010027-r0tl01kq 162 22 that that DT cord-010027-r0tl01kq 162 23 diagnosis diagnosis NN cord-010027-r0tl01kq 162 24 . . . cord-010027-r0tl01kq 163 1 Similar similar JJ cord-010027-r0tl01kq 163 2 caveats caveat NNS cord-010027-r0tl01kq 163 3 relate relate VBP cord-010027-r0tl01kq 163 4 to to IN cord-010027-r0tl01kq 163 5 absence absence NN cord-010027-r0tl01kq 163 6 of of IN cord-010027-r0tl01kq 163 7 maturation maturation NN cord-010027-r0tl01kq 163 8 as as IN cord-010027-r0tl01kq 163 9 an an DT cord-010027-r0tl01kq 163 10 indicator indicator NN cord-010027-r0tl01kq 163 11 of of IN cord-010027-r0tl01kq 163 12 malignancy malignancy NN cord-010027-r0tl01kq 163 13 . . . cord-010027-r0tl01kq 164 1 It -PRON- PRP cord-010027-r0tl01kq 164 2 is be VBZ cord-010027-r0tl01kq 164 3 seen see VBN cord-010027-r0tl01kq 164 4 in in IN cord-010027-r0tl01kq 164 5 blue blue JJ cord-010027-r0tl01kq 164 6 naevi naevus NNS cord-010027-r0tl01kq 164 7 and and CC cord-010027-r0tl01kq 164 8 all all PDT cord-010027-r0tl01kq 164 9 its -PRON- PRP$ cord-010027-r0tl01kq 164 10 variants variant NNS cord-010027-r0tl01kq 164 11 ; ; : cord-010027-r0tl01kq 164 12 deep deep JJ cord-010027-r0tl01kq 164 13 penetrating penetrating JJ cord-010027-r0tl01kq 164 14 naevi naevi NN cord-010027-r0tl01kq 164 15 ; ; : cord-010027-r0tl01kq 164 16 some some DT cord-010027-r0tl01kq 164 17 BAP1 BAP1 NNP cord-010027-r0tl01kq 164 18 naevi naevi NN cord-010027-r0tl01kq 164 19 . . . cord-010027-r0tl01kq 165 1 Melanomas melanoma NNS cord-010027-r0tl01kq 165 2 not not RB cord-010027-r0tl01kq 165 3 uncommonly uncommonly RB cord-010027-r0tl01kq 165 4 feature feature NN cord-010027-r0tl01kq 165 5 smaller small JJR cord-010027-r0tl01kq 165 6 cells cell NNS cord-010027-r0tl01kq 165 7 in in IN cord-010027-r0tl01kq 165 8 their -PRON- PRP$ cord-010027-r0tl01kq 165 9 deeper deep JJR cord-010027-r0tl01kq 165 10 parts part NNS cord-010027-r0tl01kq 165 11 , , , cord-010027-r0tl01kq 165 12 or or CC cord-010027-r0tl01kq 165 13 there there EX cord-010027-r0tl01kq 165 14 may may MD cord-010027-r0tl01kq 165 15 be be VB cord-010027-r0tl01kq 165 16 an an DT cord-010027-r0tl01kq 165 17 underlying underlie VBG cord-010027-r0tl01kq 165 18 naevus naevus NN cord-010027-r0tl01kq 165 19 remnant remnant NN cord-010027-r0tl01kq 165 20 with with IN cord-010027-r0tl01kq 165 21 smaller small JJR cord-010027-r0tl01kq 165 22 cells cell NNS cord-010027-r0tl01kq 165 23 . . . cord-010027-r0tl01kq 166 1 Naevi Naevi NNP cord-010027-r0tl01kq 166 2 with with IN cord-010027-r0tl01kq 166 3 ascent ascent NN cord-010027-r0tl01kq 166 4 include include VBP cord-010027-r0tl01kq 166 5 many many JJ cord-010027-r0tl01kq 166 6 Spitz Spitz NNP cord-010027-r0tl01kq 166 7 naevi naevus NNS cord-010027-r0tl01kq 166 8 ; ; : cord-010027-r0tl01kq 166 9 Reed Reed NNP cord-010027-r0tl01kq 166 10 naevi naevi NNP cord-010027-r0tl01kq 166 11 ; ; : cord-010027-r0tl01kq 166 12 some some DT cord-010027-r0tl01kq 166 13 naevi naevus NNS cord-010027-r0tl01kq 166 14 in in IN cord-010027-r0tl01kq 166 15 early early JJ cord-010027-r0tl01kq 166 16 infancy infancy NN cord-010027-r0tl01kq 166 17 ; ; , cord-010027-r0tl01kq 166 18 traumatized traumatize VBN cord-010027-r0tl01kq 166 19 naevi naevi NNP cord-010027-r0tl01kq 166 20 ; ; : cord-010027-r0tl01kq 166 21 naevi naevi NNP cord-010027-r0tl01kq 166 22 of of IN cord-010027-r0tl01kq 166 23 acral acral JJ cord-010027-r0tl01kq 166 24 skin skin NN cord-010027-r0tl01kq 166 25 . . . cord-010027-r0tl01kq 167 1 Over over IN cord-010027-r0tl01kq 167 2 - - HYPH cord-010027-r0tl01kq 167 3 interpretation interpretation NN cord-010027-r0tl01kq 167 4 of of IN cord-010027-r0tl01kq 167 5 ascent ascent NN cord-010027-r0tl01kq 167 6 may may MD cord-010027-r0tl01kq 167 7 result result VB cord-010027-r0tl01kq 167 8 from from IN cord-010027-r0tl01kq 167 9 inexperience inexperience NN cord-010027-r0tl01kq 167 10 with with IN cord-010027-r0tl01kq 167 11 Melan Melan NNP cord-010027-r0tl01kq 167 12 - - HYPH cord-010027-r0tl01kq 167 13 A A NNP cord-010027-r0tl01kq 167 14 and and CC cord-010027-r0tl01kq 167 15 some some DT cord-010027-r0tl01kq 167 16 other other JJ cord-010027-r0tl01kq 167 17 immune immune JJ cord-010027-r0tl01kq 167 18 stains stain NNS cord-010027-r0tl01kq 167 19 . . . cord-010027-r0tl01kq 168 1 Melanomas melanoma NNS cord-010027-r0tl01kq 168 2 devoid devoid JJ cord-010027-r0tl01kq 168 3 of of IN cord-010027-r0tl01kq 168 4 ascending ascend VBG cord-010027-r0tl01kq 168 5 melanoma melanoma NN cord-010027-r0tl01kq 168 6 cells cell NNS cord-010027-r0tl01kq 168 7 comprise comprise VBP cord-010027-r0tl01kq 168 8 a a DT cord-010027-r0tl01kq 168 9 wide wide JJ cord-010027-r0tl01kq 168 10 variety variety NN cord-010027-r0tl01kq 168 11 of of IN cord-010027-r0tl01kq 168 12 subtypes subtype NNS cord-010027-r0tl01kq 168 13 including include VBG cord-010027-r0tl01kq 168 14 , , , cord-010027-r0tl01kq 168 15 desmoplastic desmoplastic JJ cord-010027-r0tl01kq 168 16 melanomas melanoma NNS cord-010027-r0tl01kq 168 17 and and CC cord-010027-r0tl01kq 168 18 , , , cord-010027-r0tl01kq 168 19 vexingly vexingly RB cord-010027-r0tl01kq 168 20 , , , cord-010027-r0tl01kq 168 21 some some DT cord-010027-r0tl01kq 168 22 spitzoid spitzoid NN cord-010027-r0tl01kq 168 23 melanomas melanoma NNS cord-010027-r0tl01kq 168 24 . . . cord-010027-r0tl01kq 169 1 These these DT cord-010027-r0tl01kq 169 2 architectural architectural JJ cord-010027-r0tl01kq 169 3 features feature NNS cord-010027-r0tl01kq 169 4 must must MD cord-010027-r0tl01kq 169 5 , , , cord-010027-r0tl01kq 169 6 therefore therefore RB cord-010027-r0tl01kq 169 7 , , , cord-010027-r0tl01kq 169 8 be be VB cord-010027-r0tl01kq 169 9 evaluated evaluate VBN cord-010027-r0tl01kq 169 10 in in IN cord-010027-r0tl01kq 169 11 the the DT cord-010027-r0tl01kq 169 12 context context NN cord-010027-r0tl01kq 169 13 of of IN cord-010027-r0tl01kq 169 14 all all DT cord-010027-r0tl01kq 169 15 other other JJ cord-010027-r0tl01kq 169 16 findings finding NNS cord-010027-r0tl01kq 169 17 , , , cord-010027-r0tl01kq 169 18 and and CC cord-010027-r0tl01kq 169 19 with with IN cord-010027-r0tl01kq 169 20 a a DT cord-010027-r0tl01kq 169 21 ' ' `` cord-010027-r0tl01kq 169 22 splitter splitter NN cord-010027-r0tl01kq 169 23 's 's POS cord-010027-r0tl01kq 169 24 ' ' '' cord-010027-r0tl01kq 169 25 mind mind NN cord-010027-r0tl01kq 169 26 set set VBN cord-010027-r0tl01kq 169 27 , , , cord-010027-r0tl01kq 169 28 taking take VBG cord-010027-r0tl01kq 169 29 into into IN cord-010027-r0tl01kq 169 30 account account NN cord-010027-r0tl01kq 169 31 the the DT cord-010027-r0tl01kq 169 32 individual individual JJ cord-010027-r0tl01kq 169 33 characteristics characteristic NNS cord-010027-r0tl01kq 169 34 of of IN cord-010027-r0tl01kq 169 35 the the DT cord-010027-r0tl01kq 169 36 specific specific JJ cord-010027-r0tl01kq 169 37 naevus naevus NN cord-010027-r0tl01kq 169 38 and and CC cord-010027-r0tl01kq 169 39 melanoma melanoma NN cord-010027-r0tl01kq 169 40 variants variant NNS cord-010027-r0tl01kq 169 41 that that WDT cord-010027-r0tl01kq 169 42 are be VBP cord-010027-r0tl01kq 169 43 of of IN cord-010027-r0tl01kq 169 44 relevance relevance NN cord-010027-r0tl01kq 169 45 to to IN cord-010027-r0tl01kq 169 46 the the DT cord-010027-r0tl01kq 169 47 case case NN cord-010027-r0tl01kq 169 48 under under IN cord-010027-r0tl01kq 169 49 study study NN cord-010027-r0tl01kq 169 50 . . . cord-010027-r0tl01kq 170 1 Most Most JJS cord-010027-r0tl01kq 170 2 melanomas melanoma NNS cord-010027-r0tl01kq 170 3 are be VBP cord-010027-r0tl01kq 170 4 fairly fairly RB cord-010027-r0tl01kq 170 5 easy easy JJ cord-010027-r0tl01kq 170 6 to to TO cord-010027-r0tl01kq 170 7 diagnose diagnose VB cord-010027-r0tl01kq 170 8 on on IN cord-010027-r0tl01kq 170 9 histological histological JJ cord-010027-r0tl01kq 170 10 grounds ground NNS cord-010027-r0tl01kq 170 11 . . . cord-010027-r0tl01kq 171 1 However however RB cord-010027-r0tl01kq 171 2 , , , cord-010027-r0tl01kq 171 3 melanoma melanoma NN cord-010027-r0tl01kq 171 4 is be VBZ cord-010027-r0tl01kq 171 5 a a DT cord-010027-r0tl01kq 171 6 tumour tumour NN cord-010027-r0tl01kq 171 7 that that WDT cord-010027-r0tl01kq 171 8 can can MD cord-010027-r0tl01kq 171 9 histologically histologically RB cord-010027-r0tl01kq 171 10 mimic mimic VB cord-010027-r0tl01kq 171 11 almost almost RB cord-010027-r0tl01kq 171 12 any any DT cord-010027-r0tl01kq 171 13 other other JJ cord-010027-r0tl01kq 171 14 tumour tumour NN cord-010027-r0tl01kq 171 15 including include VBG cord-010027-r0tl01kq 171 16 epithelial epithelial JJ cord-010027-r0tl01kq 171 17 and and CC cord-010027-r0tl01kq 171 18 mesenchymal mesenchymal JJ cord-010027-r0tl01kq 171 19 neoplasms neoplasm NNS cord-010027-r0tl01kq 171 20 . . . cord-010027-r0tl01kq 172 1 Pathologists pathologist NNS cord-010027-r0tl01kq 172 2 need need VBP cord-010027-r0tl01kq 172 3 to to TO cord-010027-r0tl01kq 172 4 familiarize familiarize VB cord-010027-r0tl01kq 172 5 with with IN cord-010027-r0tl01kq 172 6 the the DT cord-010027-r0tl01kq 172 7 wide wide JJ cord-010027-r0tl01kq 172 8 histological histological JJ cord-010027-r0tl01kq 172 9 appearances appearance NNS cord-010027-r0tl01kq 172 10 of of IN cord-010027-r0tl01kq 172 11 melanoma melanoma NN cord-010027-r0tl01kq 172 12 to to TO cord-010027-r0tl01kq 172 13 avoid avoid VB cord-010027-r0tl01kq 172 14 serious serious JJ cord-010027-r0tl01kq 172 15 misdiagnoses misdiagnose NNS cord-010027-r0tl01kq 172 16 . . . cord-010027-r0tl01kq 173 1 Of of IN cord-010027-r0tl01kq 173 2 crucial crucial JJ cord-010027-r0tl01kq 173 3 importance importance NN cord-010027-r0tl01kq 173 4 is be VBZ cord-010027-r0tl01kq 173 5 the the DT cord-010027-r0tl01kq 173 6 knowledge knowledge NN cord-010027-r0tl01kq 173 7 that that WDT cord-010027-r0tl01kq 173 8 a a DT cord-010027-r0tl01kq 173 9 number number NN cord-010027-r0tl01kq 173 10 of of IN cord-010027-r0tl01kq 173 11 melanomas melanoma NNS cord-010027-r0tl01kq 173 12 can can MD cord-010027-r0tl01kq 173 13 closely closely RB cord-010027-r0tl01kq 173 14 mimic mimic VB cord-010027-r0tl01kq 173 15 benign benign JJ cord-010027-r0tl01kq 173 16 naevi naevus NNS cord-010027-r0tl01kq 173 17 . . . cord-010027-r0tl01kq 174 1 Some some DT cord-010027-r0tl01kq 174 2 variants variant NNS cord-010027-r0tl01kq 174 3 of of IN cord-010027-r0tl01kq 174 4 melanoma melanoma NN cord-010027-r0tl01kq 174 5 represent represent VBP cord-010027-r0tl01kq 174 6 distinctive distinctive JJ cord-010027-r0tl01kq 174 7 clinicopathological clinicopathological JJ cord-010027-r0tl01kq 174 8 entities entity NNS cord-010027-r0tl01kq 174 9 and and CC cord-010027-r0tl01kq 174 10 these these DT cord-010027-r0tl01kq 174 11 include include VBP cord-010027-r0tl01kq 174 12 desmoplastic desmoplastic JJ cord-010027-r0tl01kq 174 13 melanoma melanoma NN cord-010027-r0tl01kq 174 14 , , , cord-010027-r0tl01kq 174 15 " " `` cord-010027-r0tl01kq 174 16 malignant malignant JJ cord-010027-r0tl01kq 174 17 " " '' cord-010027-r0tl01kq 174 18 blue blue JJ cord-010027-r0tl01kq 174 19 naevus naevus NN cord-010027-r0tl01kq 174 20 , , , cord-010027-r0tl01kq 174 21 pigment pigment NN cord-010027-r0tl01kq 174 22 synthethizing synthethizing NN cord-010027-r0tl01kq 174 23 melanoma melanoma NN cord-010027-r0tl01kq 174 24 , , , cord-010027-r0tl01kq 174 25 naevoid naevoid JJ cord-010027-r0tl01kq 174 26 melanoma melanoma NN cord-010027-r0tl01kq 174 27 , , , cord-010027-r0tl01kq 174 28 spitzoid spitzoid FW cord-010027-r0tl01kq 174 29 melanoma melanoma NN cord-010027-r0tl01kq 174 30 and and CC cord-010027-r0tl01kq 174 31 epidermotropic epidermotropic NNP cord-010027-r0tl01kq 174 32 metastatic metastatic JJ cord-010027-r0tl01kq 174 33 melanoma melanoma NN cord-010027-r0tl01kq 174 34 . . . cord-010027-r0tl01kq 175 1 Tumoral Tumoral NNP cord-010027-r0tl01kq 175 2 melanosis melanosis NNP cord-010027-r0tl01kq 175 3 refers refer VBZ cord-010027-r0tl01kq 175 4 to to TO cord-010027-r0tl01kq 175 5 complete complete VB cord-010027-r0tl01kq 175 6 regression regression NN cord-010027-r0tl01kq 175 7 of of IN cord-010027-r0tl01kq 175 8 a a DT cord-010027-r0tl01kq 175 9 melanoma melanoma NN cord-010027-r0tl01kq 175 10 , , , cord-010027-r0tl01kq 175 11 a a DT cord-010027-r0tl01kq 175 12 diagnosis diagnosis NN cord-010027-r0tl01kq 175 13 that that IN cord-010027-r0tl01kq 175 14 it -PRON- PRP cord-010027-r0tl01kq 175 15 is be VBZ cord-010027-r0tl01kq 175 16 often often RB cord-010027-r0tl01kq 175 17 missed miss VBN cord-010027-r0tl01kq 175 18 because because IN cord-010027-r0tl01kq 175 19 of of IN cord-010027-r0tl01kq 175 20 the the DT cord-010027-r0tl01kq 175 21 absence absence NN cord-010027-r0tl01kq 175 22 of of IN cord-010027-r0tl01kq 175 23 tumour tumour NN cord-010027-r0tl01kq 175 24 cells cell NNS cord-010027-r0tl01kq 175 25 within within IN cord-010027-r0tl01kq 175 26 the the DT cord-010027-r0tl01kq 175 27 regressed regressed JJ cord-010027-r0tl01kq 175 28 area area NN cord-010027-r0tl01kq 175 29 . . . cord-010027-r0tl01kq 176 1 A a DT cord-010027-r0tl01kq 176 2 small small JJ cord-010027-r0tl01kq 176 3 percentage percentage NN cord-010027-r0tl01kq 176 4 of of IN cord-010027-r0tl01kq 176 5 melanomas melanomas JJR cord-010027-r0tl01kq 176 6 display display VBP cord-010027-r0tl01kq 176 7 focal focal JJ cord-010027-r0tl01kq 176 8 or or CC cord-010027-r0tl01kq 176 9 extensive extensive JJ cord-010027-r0tl01kq 176 10 histological histological JJ cord-010027-r0tl01kq 176 11 changes change NNS cord-010027-r0tl01kq 176 12 that that WDT cord-010027-r0tl01kq 176 13 closely closely RB cord-010027-r0tl01kq 176 14 mimic mimic VBP cord-010027-r0tl01kq 176 15 other other JJ cord-010027-r0tl01kq 176 16 neoplasms neoplasm NNS cord-010027-r0tl01kq 176 17 and and CC cord-010027-r0tl01kq 176 18 often often RB cord-010027-r0tl01kq 176 19 a a DT cord-010027-r0tl01kq 176 20 combination combination NN cord-010027-r0tl01kq 176 21 of of IN cord-010027-r0tl01kq 176 22 histological histological JJ cord-010027-r0tl01kq 176 23 features feature NNS cord-010027-r0tl01kq 176 24 with with IN cord-010027-r0tl01kq 176 25 immunohistochemistry immunohistochemistry NN cord-010027-r0tl01kq 176 26 is be VBZ cord-010027-r0tl01kq 176 27 necessary necessary JJ cord-010027-r0tl01kq 176 28 to to TO cord-010027-r0tl01kq 176 29 arrive arrive VB cord-010027-r0tl01kq 176 30 to to IN cord-010027-r0tl01kq 176 31 the the DT cord-010027-r0tl01kq 176 32 correct correct JJ cord-010027-r0tl01kq 176 33 diagnosis diagnosis NN cord-010027-r0tl01kq 176 34 . . . cord-010027-r0tl01kq 177 1 Microscopic microscopic JJ cord-010027-r0tl01kq 177 2 variants variant NNS cord-010027-r0tl01kq 177 3 of of IN cord-010027-r0tl01kq 177 4 melanoma melanoma NN cord-010027-r0tl01kq 177 5 include include VBP cord-010027-r0tl01kq 177 6 adenoid adenoid NN cord-010027-r0tl01kq 177 7 ( ( -LRB- cord-010027-r0tl01kq 177 8 pseudoglandular pseudoglandular NNP cord-010027-r0tl01kq 177 9 ) ) -RRB- cord-010027-r0tl01kq 177 10 , , , cord-010027-r0tl01kq 177 11 angiotropic angiotropic NNP cord-010027-r0tl01kq 177 12 and and CC cord-010027-r0tl01kq 177 13 angiomatoid angiomatoid NNP cord-010027-r0tl01kq 177 14 , , , cord-010027-r0tl01kq 177 15 signet signet NN cord-010027-r0tl01kq 177 16 ring ring NN cord-010027-r0tl01kq 177 17 cell cell NN cord-010027-r0tl01kq 177 18 , , , cord-010027-r0tl01kq 177 19 balloon balloon NN cord-010027-r0tl01kq 177 20 cell cell NN cord-010027-r0tl01kq 177 21 , , , cord-010027-r0tl01kq 177 22 clear clear JJ cord-010027-r0tl01kq 177 23 cell cell NN cord-010027-r0tl01kq 177 24 , , , cord-010027-r0tl01kq 177 25 rhabdoid rhabdoid NN cord-010027-r0tl01kq 177 26 and and CC cord-010027-r0tl01kq 177 27 follicular follicular JJ cord-010027-r0tl01kq 177 28 ( ( -LRB- cord-010027-r0tl01kq 177 29 with with IN cord-010027-r0tl01kq 177 30 exclusive exclusive JJ cord-010027-r0tl01kq 177 31 involvement involvement NN cord-010027-r0tl01kq 177 32 of of IN cord-010027-r0tl01kq 177 33 hair hair NN cord-010027-r0tl01kq 177 34 follicles follicle NNS cord-010027-r0tl01kq 177 35 ) ) -RRB- cord-010027-r0tl01kq 177 36 . . . cord-010027-r0tl01kq 178 1 Some some DT cord-010027-r0tl01kq 178 2 melanomas melanoma NNS cord-010027-r0tl01kq 178 3 display display VBP cord-010027-r0tl01kq 178 4 heterologous heterologous JJ cord-010027-r0tl01kq 178 5 differentiation differentiation NN cord-010027-r0tl01kq 178 6 also also RB cord-010027-r0tl01kq 178 7 known know VBN cord-010027-r0tl01kq 178 8 as as IN cord-010027-r0tl01kq 178 9 transdifferentiation transdifferentiation NN cord-010027-r0tl01kq 178 10 . . . cord-010027-r0tl01kq 179 1 The the DT cord-010027-r0tl01kq 179 2 latter latter JJ cord-010027-r0tl01kq 179 3 should should MD cord-010027-r0tl01kq 179 4 not not RB cord-010027-r0tl01kq 179 5 be be VB cord-010027-r0tl01kq 179 6 confused confuse VBN cord-010027-r0tl01kq 179 7 with with IN cord-010027-r0tl01kq 179 8 the the DT cord-010027-r0tl01kq 179 9 so so RB cord-010027-r0tl01kq 179 10 - - HYPH cord-010027-r0tl01kq 179 11 called call VBN cord-010027-r0tl01kq 179 12 collision collision NN cord-010027-r0tl01kq 179 13 tumour tumour NN cord-010027-r0tl01kq 179 14 in in IN cord-010027-r0tl01kq 179 15 which which WDT cord-010027-r0tl01kq 179 16 a a DT cord-010027-r0tl01kq 179 17 melanoma melanoma NN cord-010027-r0tl01kq 179 18 co co NN cord-010027-r0tl01kq 179 19 - - NN cord-010027-r0tl01kq 179 20 exists exist VBZ cord-010027-r0tl01kq 179 21 with with IN cord-010027-r0tl01kq 179 22 a a DT cord-010027-r0tl01kq 179 23 neoplasm neoplasm NN cord-010027-r0tl01kq 179 24 of of IN cord-010027-r0tl01kq 179 25 different different JJ cord-010027-r0tl01kq 179 26 lineage lineage NN cord-010027-r0tl01kq 179 27 . . . cord-010027-r0tl01kq 180 1 A a DT cord-010027-r0tl01kq 180 2 wide wide JJ cord-010027-r0tl01kq 180 3 variety variety NN cord-010027-r0tl01kq 180 4 of of IN cord-010027-r0tl01kq 180 5 heterologous heterologous JJ cord-010027-r0tl01kq 180 6 differentiation differentiation NN cord-010027-r0tl01kq 180 7 has have VBZ cord-010027-r0tl01kq 180 8 been be VBN cord-010027-r0tl01kq 180 9 described describe VBN cord-010027-r0tl01kq 180 10 in in IN cord-010027-r0tl01kq 180 11 melanoma melanoma NN cord-010027-r0tl01kq 180 12 including include VBG cord-010027-r0tl01kq 180 13 osteosarcomatous osteosarcomatous JJ cord-010027-r0tl01kq 180 14 and and CC cord-010027-r0tl01kq 180 15 chondrosarcomatous chondrosarcomatous NNP cord-010027-r0tl01kq 180 16 ( ( -LRB- cord-010027-r0tl01kq 180 17 mainly mainly RB cord-010027-r0tl01kq 180 18 seen see VBN cord-010027-r0tl01kq 180 19 in in IN cord-010027-r0tl01kq 180 20 acral acral JJ cord-010027-r0tl01kq 180 21 melanomas melanoma NNS cord-010027-r0tl01kq 180 22 ) ) -RRB- cord-010027-r0tl01kq 180 23 , , , cord-010027-r0tl01kq 180 24 meiomysarcomatous meiomysarcomatous JJ cord-010027-r0tl01kq 180 25 , , , cord-010027-r0tl01kq 180 26 rhabdomyosarcomatous rhabdomyosarcomatous JJ cord-010027-r0tl01kq 180 27 , , , cord-010027-r0tl01kq 180 28 neuroendocrine neuroendocrine JJ cord-010027-r0tl01kq 180 29 , , , cord-010027-r0tl01kq 180 30 ganglioneuromatous ganglioneuromatous JJ cord-010027-r0tl01kq 180 31 and and CC cord-010027-r0tl01kq 180 32 even even RB cord-010027-r0tl01kq 180 33 epithelial epithelial JJ cord-010027-r0tl01kq 180 34 . . . cord-010027-r0tl01kq 181 1 Except except IN cord-010027-r0tl01kq 181 2 for for IN cord-010027-r0tl01kq 181 3 desmoplastic desmoplastic JJ cord-010027-r0tl01kq 181 4 and and CC cord-010027-r0tl01kq 181 5 pigment pigment NN cord-010027-r0tl01kq 181 6 synthetizing synthetize VBG cord-010027-r0tl01kq 181 7 melanoma melanoma NN cord-010027-r0tl01kq 181 8 , , , cord-010027-r0tl01kq 181 9 all all DT cord-010027-r0tl01kq 181 10 other other JJ cord-010027-r0tl01kq 181 11 variants variant NNS cord-010027-r0tl01kq 181 12 of of IN cord-010027-r0tl01kq 181 13 the the DT cord-010027-r0tl01kq 181 14 tumour tumour NN cord-010027-r0tl01kq 181 15 have have VBP cord-010027-r0tl01kq 181 16 the the DT cord-010027-r0tl01kq 181 17 same same JJ cord-010027-r0tl01kq 181 18 behaviour behaviour NN cord-010027-r0tl01kq 181 19 as as IN cord-010027-r0tl01kq 181 20 ordinary ordinary JJ cord-010027-r0tl01kq 181 21 melanomas melanoma NNS cord-010027-r0tl01kq 181 22 . . . cord-010027-r0tl01kq 182 1 Melanocytic melanocytic JJ cord-010027-r0tl01kq 182 2 tumours tumour NNS cord-010027-r0tl01kq 182 3 with with IN cord-010027-r0tl01kq 182 4 Spitzoid Spitzoid NNP cord-010027-r0tl01kq 182 5 features feature VBZ cord-010027-r0tl01kq 182 6 represent represent VBP cord-010027-r0tl01kq 182 7 one one CD cord-010027-r0tl01kq 182 8 of of IN cord-010027-r0tl01kq 182 9 the the DT cord-010027-r0tl01kq 182 10 most most RBS cord-010027-r0tl01kq 182 11 challenging challenging JJ cord-010027-r0tl01kq 182 12 and and CC cord-010027-r0tl01kq 182 13 controversial controversial JJ cord-010027-r0tl01kq 182 14 areas area NNS cord-010027-r0tl01kq 182 15 in in IN cord-010027-r0tl01kq 182 16 Dermatopathology Dermatopathology NNP cord-010027-r0tl01kq 182 17 . . . cord-010027-r0tl01kq 183 1 What what WP cord-010027-r0tl01kq 183 2 is be VBZ cord-010027-r0tl01kq 183 3 currently currently RB cord-010027-r0tl01kq 183 4 known know VBN cord-010027-r0tl01kq 183 5 as as IN cord-010027-r0tl01kq 183 6 Spitz Spitz NNP cord-010027-r0tl01kq 183 7 naevus naevus NN cord-010027-r0tl01kq 183 8 was be VBD cord-010027-r0tl01kq 183 9 initially initially RB cord-010027-r0tl01kq 183 10 reported report VBN cord-010027-r0tl01kq 183 11 as as IN cord-010027-r0tl01kq 183 12 " " `` cord-010027-r0tl01kq 183 13 juvenile juvenile JJ cord-010027-r0tl01kq 183 14 melanoma melanoma NN cord-010027-r0tl01kq 183 15 " " '' cord-010027-r0tl01kq 183 16 by by IN cord-010027-r0tl01kq 183 17 Sophie Sophie NNP cord-010027-r0tl01kq 183 18 Spitz Spitz NNP cord-010027-r0tl01kq 183 19 on on IN cord-010027-r0tl01kq 183 20 1948 1948 CD cord-010027-r0tl01kq 183 21 . . . cord-010027-r0tl01kq 184 1 She -PRON- PRP cord-010027-r0tl01kq 184 2 recognized recognize VBD cord-010027-r0tl01kq 184 3 the the DT cord-010027-r0tl01kq 184 4 relatively relatively RB cord-010027-r0tl01kq 184 5 indolent indolent JJ cord-010027-r0tl01kq 184 6 but but CC cord-010027-r0tl01kq 184 7 somewhat somewhat RB cord-010027-r0tl01kq 184 8 unpredictable unpredictable JJ cord-010027-r0tl01kq 184 9 behaviour behaviour NN cord-010027-r0tl01kq 184 10 of of IN cord-010027-r0tl01kq 184 11 these these DT cord-010027-r0tl01kq 184 12 distinctive distinctive JJ cord-010027-r0tl01kq 184 13 melanocytic melanocytic JJ cord-010027-r0tl01kq 184 14 lesions lesion NNS cord-010027-r0tl01kq 184 15 that that WDT cord-010027-r0tl01kq 184 16 are be VBP cord-010027-r0tl01kq 184 17 particularly particularly RB cord-010027-r0tl01kq 184 18 common common JJ cord-010027-r0tl01kq 184 19 in in IN cord-010027-r0tl01kq 184 20 young young JJ cord-010027-r0tl01kq 184 21 children child NNS cord-010027-r0tl01kq 184 22 . . . cord-010027-r0tl01kq 185 1 Over over IN cord-010027-r0tl01kq 185 2 the the DT cord-010027-r0tl01kq 185 3 years year NNS cord-010027-r0tl01kq 185 4 , , , cord-010027-r0tl01kq 185 5 the the DT cord-010027-r0tl01kq 185 6 histological histological JJ cord-010027-r0tl01kq 185 7 spectrum spectrum NN cord-010027-r0tl01kq 185 8 of of IN cord-010027-r0tl01kq 185 9 these these DT cord-010027-r0tl01kq 185 10 tumours tumour NNS cord-010027-r0tl01kq 185 11 was be VBD cord-010027-r0tl01kq 185 12 expanded expand VBN cord-010027-r0tl01kq 185 13 , , , cord-010027-r0tl01kq 185 14 and and CC cord-010027-r0tl01kq 185 15 it -PRON- PRP cord-010027-r0tl01kq 185 16 has have VBZ cord-010027-r0tl01kq 185 17 become become VBN cord-010027-r0tl01kq 185 18 clear clear JJ cord-010027-r0tl01kq 185 19 that that IN cord-010027-r0tl01kq 185 20 classical classical JJ cord-010027-r0tl01kq 185 21 Spitz Spitz NNP cord-010027-r0tl01kq 185 22 naevi naevus NNS cord-010027-r0tl01kq 185 23 follow follow VBP cord-010027-r0tl01kq 185 24 an an DT cord-010027-r0tl01kq 185 25 entirely entirely RB cord-010027-r0tl01kq 185 26 indolent indolent JJ cord-010027-r0tl01kq 185 27 disease disease NN cord-010027-r0tl01kq 185 28 course course NN cord-010027-r0tl01kq 185 29 . . . cord-010027-r0tl01kq 186 1 The the DT cord-010027-r0tl01kq 186 2 prognosis prognosis NN cord-010027-r0tl01kq 186 3 of of IN cord-010027-r0tl01kq 186 4 tumours tumour NNS cord-010027-r0tl01kq 186 5 with with IN cord-010027-r0tl01kq 186 6 atypical atypical JJ cord-010027-r0tl01kq 186 7 histological histological JJ cord-010027-r0tl01kq 186 8 features feature NNS cord-010027-r0tl01kq 186 9 remains remain VBZ cord-010027-r0tl01kq 186 10 somewhat somewhat RB cord-010027-r0tl01kq 186 11 unpredictable unpredictable JJ cord-010027-r0tl01kq 186 12 . . . cord-010027-r0tl01kq 187 1 This this DT cord-010027-r0tl01kq 187 2 presentation presentation NN cord-010027-r0tl01kq 187 3 will will MD cord-010027-r0tl01kq 187 4 give give VB cord-010027-r0tl01kq 187 5 an an DT cord-010027-r0tl01kq 187 6 overview overview NN cord-010027-r0tl01kq 187 7 of of IN cord-010027-r0tl01kq 187 8 the the DT cord-010027-r0tl01kq 187 9 morphological morphological JJ cord-010027-r0tl01kq 187 10 spectrum spectrum NN cord-010027-r0tl01kq 187 11 of of IN cord-010027-r0tl01kq 187 12 Spitzoid Spitzoid NNP cord-010027-r0tl01kq 187 13 melanocytic melanocytic JJ cord-010027-r0tl01kq 187 14 tumours tumour NNS cord-010027-r0tl01kq 187 15 , , , cord-010027-r0tl01kq 187 16 their -PRON- PRP$ cord-010027-r0tl01kq 187 17 behaviour behaviour NN cord-010027-r0tl01kq 187 18 and and CC cord-010027-r0tl01kq 187 19 recent recent JJ cord-010027-r0tl01kq 187 20 advances advance NNS cord-010027-r0tl01kq 187 21 of of IN cord-010027-r0tl01kq 187 22 their -PRON- PRP$ cord-010027-r0tl01kq 187 23 molecular molecular JJ cord-010027-r0tl01kq 187 24 characteristics characteristic NNS cord-010027-r0tl01kq 187 25 . . . cord-010027-r0tl01kq 188 1 Optimisation optimisation NN cord-010027-r0tl01kq 188 2 is be VBZ cord-010027-r0tl01kq 188 3 a a DT cord-010027-r0tl01kq 188 4 core core NN cord-010027-r0tl01kq 188 5 tenet tenet NN cord-010027-r0tl01kq 188 6 in in IN cord-010027-r0tl01kq 188 7 radiography radiography NN cord-010027-r0tl01kq 188 8 and and CC cord-010027-r0tl01kq 188 9 involves involve VBZ cord-010027-r0tl01kq 188 10 the the DT cord-010027-r0tl01kq 188 11 radiographer radiographer NN cord-010027-r0tl01kq 188 12 ensuring ensure VBG cord-010027-r0tl01kq 188 13 that that IN cord-010027-r0tl01kq 188 14 images image NNS cord-010027-r0tl01kq 188 15 of of IN cord-010027-r0tl01kq 188 16 diagnostic diagnostic JJ cord-010027-r0tl01kq 188 17 quality quality NN cord-010027-r0tl01kq 188 18 are be VBP cord-010027-r0tl01kq 188 19 produced produce VBN cord-010027-r0tl01kq 188 20 with with IN cord-010027-r0tl01kq 188 21 minimum minimum JJ cord-010027-r0tl01kq 188 22 radiation radiation NN cord-010027-r0tl01kq 188 23 dose dose NN cord-010027-r0tl01kq 188 24 burden burden NN cord-010027-r0tl01kq 188 25 to to IN cord-010027-r0tl01kq 188 26 patient patient NN cord-010027-r0tl01kq 188 27 and and CC cord-010027-r0tl01kq 188 28 staff staff NN cord-010027-r0tl01kq 188 29 [ [ -LRB- cord-010027-r0tl01kq 188 30 1 1 CD cord-010027-r0tl01kq 188 31 , , , cord-010027-r0tl01kq 188 32 2 2 CD cord-010027-r0tl01kq 188 33 ] ] -RRB- cord-010027-r0tl01kq 188 34 . . . cord-010027-r0tl01kq 189 1 In in IN cord-010027-r0tl01kq 189 2 paediatric paediatric JJ cord-010027-r0tl01kq 189 3 practice practice NN cord-010027-r0tl01kq 189 4 this this DT cord-010027-r0tl01kq 189 5 is be VBZ cord-010027-r0tl01kq 189 6 particularly particularly RB cord-010027-r0tl01kq 189 7 important important JJ cord-010027-r0tl01kq 189 8 due due IN cord-010027-r0tl01kq 189 9 to to IN cord-010027-r0tl01kq 189 10 the the DT cord-010027-r0tl01kq 189 11 more more RBR cord-010027-r0tl01kq 189 12 radiosensitive radiosensitive JJ cord-010027-r0tl01kq 189 13 nature nature NN cord-010027-r0tl01kq 189 14 of of IN cord-010027-r0tl01kq 189 15 the the DT cord-010027-r0tl01kq 189 16 child child NN cord-010027-r0tl01kq 189 17 [ [ -LRB- cord-010027-r0tl01kq 189 18 1 1 CD cord-010027-r0tl01kq 189 19 ] ] -RRB- cord-010027-r0tl01kq 189 20 . . . cord-010027-r0tl01kq 190 1 In in IN cord-010027-r0tl01kq 190 2 alignment alignment NN cord-010027-r0tl01kq 190 3 with with IN cord-010027-r0tl01kq 190 4 the the DT cord-010027-r0tl01kq 190 5 ISRRT ISRRT NNP cord-010027-r0tl01kq 190 6 2013 2013 CD cord-010027-r0tl01kq 190 7 World World NNP cord-010027-r0tl01kq 190 8 Radiography Radiography NNP cord-010027-r0tl01kq 190 9 Day Day NNP cord-010027-r0tl01kq 190 10 theme theme NN cord-010027-r0tl01kq 190 11 ' ' '' cord-010027-r0tl01kq 190 12 Radiographers Radiographers NNP cord-010027-r0tl01kq 190 13 Optimise Optimise NNP cord-010027-r0tl01kq 190 14 Dose Dose NNP cord-010027-r0tl01kq 190 15 ' ' '' cord-010027-r0tl01kq 190 16 , , , cord-010027-r0tl01kq 190 17 radiography radiography NN cord-010027-r0tl01kq 190 18 students student NNS cord-010027-r0tl01kq 190 19 in in IN cord-010027-r0tl01kq 190 20 an an DT cord-010027-r0tl01kq 190 21 institution institution NN cord-010027-r0tl01kq 190 22 submitted submit VBD cord-010027-r0tl01kq 190 23 clinical clinical JJ cord-010027-r0tl01kq 190 24 case case NN cord-010027-r0tl01kq 190 25 study study NN cord-010027-r0tl01kq 190 26 coursework coursework NN cord-010027-r0tl01kq 190 27 that that WDT cord-010027-r0tl01kq 190 28 focused focus VBD cord-010027-r0tl01kq 190 29 on on IN cord-010027-r0tl01kq 190 30 paediatric paediatric JJ cord-010027-r0tl01kq 190 31 radiation radiation NN cord-010027-r0tl01kq 190 32 dose dose NN cord-010027-r0tl01kq 190 33 optimisation optimisation NN cord-010027-r0tl01kq 190 34 . . . cord-010027-r0tl01kq 191 1 The the DT cord-010027-r0tl01kq 191 2 purpose purpose NN cord-010027-r0tl01kq 191 3 of of IN cord-010027-r0tl01kq 191 4 the the DT cord-010027-r0tl01kq 191 5 current current JJ cord-010027-r0tl01kq 191 6 study study NN cord-010027-r0tl01kq 191 7 was be VBD cord-010027-r0tl01kq 191 8 to to TO cord-010027-r0tl01kq 191 9 analyse analyse VB cord-010027-r0tl01kq 191 10 these these DT cord-010027-r0tl01kq 191 11 case case NN cord-010027-r0tl01kq 191 12 studies study NNS cord-010027-r0tl01kq 191 13 as as IN cord-010027-r0tl01kq 191 14 examples example NNS cord-010027-r0tl01kq 191 15 of of IN cord-010027-r0tl01kq 191 16 prevailing prevail VBG cord-010027-r0tl01kq 191 17 radiographic radiographic JJ cord-010027-r0tl01kq 191 18 practice practice NN cord-010027-r0tl01kq 191 19 and and CC cord-010027-r0tl01kq 191 20 to to TO cord-010027-r0tl01kq 191 21 compare compare VB cord-010027-r0tl01kq 191 22 students student NNS cord-010027-r0tl01kq 191 23 ' ' POS cord-010027-r0tl01kq 191 24 perception perception NN cord-010027-r0tl01kq 191 25 of of IN cord-010027-r0tl01kq 191 26 optimisation optimisation NN cord-010027-r0tl01kq 191 27 with with IN cord-010027-r0tl01kq 191 28 the the DT cord-010027-r0tl01kq 191 29 evidence evidence NN cord-010027-r0tl01kq 191 30 within within IN cord-010027-r0tl01kq 191 31 each each DT cord-010027-r0tl01kq 191 32 case case NN cord-010027-r0tl01kq 191 33 . . . cord-010027-r0tl01kq 192 1 The the DT cord-010027-r0tl01kq 192 2 evidence evidence NN cord-010027-r0tl01kq 192 3 of of IN cord-010027-r0tl01kq 192 4 optimisation optimisation NN cord-010027-r0tl01kq 192 5 was be VBD cord-010027-r0tl01kq 192 6 established establish VBN cord-010027-r0tl01kq 192 7 through through IN cord-010027-r0tl01kq 192 8 independent independent JJ cord-010027-r0tl01kq 192 9 and and CC cord-010027-r0tl01kq 192 10 objective objective JJ cord-010027-r0tl01kq 192 11 image image NN cord-010027-r0tl01kq 192 12 analysis analysis NN cord-010027-r0tl01kq 192 13 along along IN cord-010027-r0tl01kq 192 14 with with IN cord-010027-r0tl01kq 192 15 thematic thematic JJ cord-010027-r0tl01kq 192 16 analysis analysis NN cord-010027-r0tl01kq 192 17 of of IN cord-010027-r0tl01kq 192 18 the the DT cord-010027-r0tl01kq 192 19 case case NN cord-010027-r0tl01kq 192 20 commentaries commentary NNS cord-010027-r0tl01kq 192 21 . . . cord-010027-r0tl01kq 193 1 The the DT cord-010027-r0tl01kq 193 2 case case NN cord-010027-r0tl01kq 193 3 study study NN cord-010027-r0tl01kq 193 4 evidence evidence NN cord-010027-r0tl01kq 193 5 demonstrated demonstrate VBD cord-010027-r0tl01kq 193 6 that that IN cord-010027-r0tl01kq 193 7 optimised optimise VBN cord-010027-r0tl01kq 193 8 techniques technique NNS cord-010027-r0tl01kq 193 9 were be VBD cord-010027-r0tl01kq 193 10 generally generally RB cord-010027-r0tl01kq 193 11 well well RB cord-010027-r0tl01kq 193 12 implemented implement VBN cord-010027-r0tl01kq 193 13 . . . cord-010027-r0tl01kq 194 1 The the DT cord-010027-r0tl01kq 194 2 exception exception NN cord-010027-r0tl01kq 194 3 was be VBD cord-010027-r0tl01kq 194 4 collimation collimation NN cord-010027-r0tl01kq 194 5 , , , cord-010027-r0tl01kq 194 6 which which WDT cord-010027-r0tl01kq 194 7 was be VBD cord-010027-r0tl01kq 194 8 sub sub NN cord-010027-r0tl01kq 194 9 - - JJ cord-010027-r0tl01kq 194 10 optimal optimal JJ cord-010027-r0tl01kq 194 11 in in IN cord-010027-r0tl01kq 194 12 84 84 CD cord-010027-r0tl01kq 194 13 % % NN cord-010027-r0tl01kq 194 14 ( ( -LRB- cord-010027-r0tl01kq 194 15 n=31 n=31 NNP cord-010027-r0tl01kq 194 16 ) ) -RRB- cord-010027-r0tl01kq 194 17 of of IN cord-010027-r0tl01kq 194 18 the the DT cord-010027-r0tl01kq 194 19 examinations examination NNS cord-010027-r0tl01kq 194 20 , , , cord-010027-r0tl01kq 194 21 and and CC cord-010027-r0tl01kq 194 22 on on IN cord-010027-r0tl01kq 194 23 average average JJ cord-010027-r0tl01kq 194 24 irradiating irradiate VBG cord-010027-r0tl01kq 194 25 an an DT cord-010027-r0tl01kq 194 26 area area NN cord-010027-r0tl01kq 194 27 27 27 CD cord-010027-r0tl01kq 194 28 % % NN cord-010027-r0tl01kq 194 29 larger large JJR cord-010027-r0tl01kq 194 30 than than IN cord-010027-r0tl01kq 194 31 necessary necessary JJ cord-010027-r0tl01kq 194 32 . . . cord-010027-r0tl01kq 195 1 Students student NNS cord-010027-r0tl01kq 195 2 were be VBD cord-010027-r0tl01kq 195 3 generally generally RB cord-010027-r0tl01kq 195 4 able able JJ cord-010027-r0tl01kq 195 5 to to TO cord-010027-r0tl01kq 195 6 correctly correctly RB cord-010027-r0tl01kq 195 7 identify identify VB cord-010027-r0tl01kq 195 8 techniques technique NNS cord-010027-r0tl01kq 195 9 as as IN cord-010027-r0tl01kq 195 10 optimal optimal JJ cord-010027-r0tl01kq 195 11 or or CC cord-010027-r0tl01kq 195 12 not not RB cord-010027-r0tl01kq 195 13 . . . cord-010027-r0tl01kq 196 1 However however RB cord-010027-r0tl01kq 196 2 , , , cord-010027-r0tl01kq 196 3 when when WRB cord-010027-r0tl01kq 196 4 appraising appraise VBG cord-010027-r0tl01kq 196 5 exposure exposure NN cord-010027-r0tl01kq 196 6 , , , cord-010027-r0tl01kq 196 7 positioning positioning NN cord-010027-r0tl01kq 196 8 and and CC cord-010027-r0tl01kq 196 9 collimation collimation NN cord-010027-r0tl01kq 196 10 , , , cord-010027-r0tl01kq 196 11 between between IN cord-010027-r0tl01kq 196 12 9 9 CD cord-010027-r0tl01kq 196 13 % % NN cord-010027-r0tl01kq 196 14 and and CC cord-010027-r0tl01kq 196 15 33 33 CD cord-010027-r0tl01kq 196 16 % % NN cord-010027-r0tl01kq 196 17 of of IN cord-010027-r0tl01kq 196 18 students student NNS cord-010027-r0tl01kq 196 19 were be VBD cord-010027-r0tl01kq 196 20 inaccurate inaccurate JJ cord-010027-r0tl01kq 196 21 in in IN cord-010027-r0tl01kq 196 22 their -PRON- PRP$ cord-010027-r0tl01kq 196 23 assessment assessment NN cord-010027-r0tl01kq 196 24 of of IN cord-010027-r0tl01kq 196 25 what what WP cord-010027-r0tl01kq 196 26 is be VBZ cord-010027-r0tl01kq 196 27 optimal optimal JJ cord-010027-r0tl01kq 196 28 . . . cord-010027-r0tl01kq 197 1 Overall overall RB cord-010027-r0tl01kq 197 2 the the DT cord-010027-r0tl01kq 197 3 study study NN cord-010027-r0tl01kq 197 4 reflects reflect VBZ cord-010027-r0tl01kq 197 5 positively positively RB cord-010027-r0tl01kq 197 6 on on IN cord-010027-r0tl01kq 197 7 current current JJ cord-010027-r0tl01kq 197 8 Irish irish JJ cord-010027-r0tl01kq 197 9 paediatric paediatric JJ cord-010027-r0tl01kq 197 10 radiography radiography NN cord-010027-r0tl01kq 197 11 with with IN cord-010027-r0tl01kq 197 12 regard regard NN cord-010027-r0tl01kq 197 13 to to IN cord-010027-r0tl01kq 197 14 dose dose NN cord-010027-r0tl01kq 197 15 optimisation optimisation NN cord-010027-r0tl01kq 197 16 , , , cord-010027-r0tl01kq 197 17 although although IN cord-010027-r0tl01kq 197 18 more more RBR cord-010027-r0tl01kq 197 19 accurate accurate JJ cord-010027-r0tl01kq 197 20 collimation collimation NN cord-010027-r0tl01kq 197 21 needs need NNS cord-010027-r0tl01kq 197 22 to to TO cord-010027-r0tl01kq 197 23 be be VB cord-010027-r0tl01kq 197 24 practised practise VBN cord-010027-r0tl01kq 197 25 . . . cord-010027-r0tl01kq 198 1 Similarly similarly RB cord-010027-r0tl01kq 198 2 student student NN cord-010027-r0tl01kq 198 3 perceptions perception NNS cord-010027-r0tl01kq 198 4 show show VBP cord-010027-r0tl01kq 198 5 good good JJ cord-010027-r0tl01kq 198 6 understanding understanding NN cord-010027-r0tl01kq 198 7 of of IN cord-010027-r0tl01kq 198 8 optimal optimal JJ cord-010027-r0tl01kq 198 9 techniques technique NNS cord-010027-r0tl01kq 198 10 , , , cord-010027-r0tl01kq 198 11 although although IN cord-010027-r0tl01kq 198 12 appreciation appreciation NN cord-010027-r0tl01kq 198 13 of of IN cord-010027-r0tl01kq 198 14 exposure exposure NN cord-010027-r0tl01kq 198 15 , , , cord-010027-r0tl01kq 198 16 positioning positioning NN cord-010027-r0tl01kq 198 17 and and CC cord-010027-r0tl01kq 198 18 collimation collimation NN cord-010027-r0tl01kq 198 19 errors error NNS cord-010027-r0tl01kq 198 20 could could MD cord-010027-r0tl01kq 198 21 be be VB cord-010027-r0tl01kq 198 22 improved improve VBN cord-010027-r0tl01kq 198 23 . . . cord-010027-r0tl01kq 199 1 The the DT cord-010027-r0tl01kq 199 2 aim aim NN cord-010027-r0tl01kq 199 3 of of IN cord-010027-r0tl01kq 199 4 this this DT cord-010027-r0tl01kq 199 5 project project NN cord-010027-r0tl01kq 199 6 was be VBD cord-010027-r0tl01kq 199 7 to to TO cord-010027-r0tl01kq 199 8 design design VB cord-010027-r0tl01kq 199 9 and and CC cord-010027-r0tl01kq 199 10 prototype prototype NN cord-010027-r0tl01kq 199 11 immobilisation immobilisation NN cord-010027-r0tl01kq 199 12 devices device NNS cord-010027-r0tl01kq 199 13 for for IN cord-010027-r0tl01kq 199 14 children child NNS cord-010027-r0tl01kq 199 15 who who WP cord-010027-r0tl01kq 199 16 are be VBP cord-010027-r0tl01kq 199 17 unable unable JJ cord-010027-r0tl01kq 199 18 to to TO cord-010027-r0tl01kq 199 19 independently independently RB cord-010027-r0tl01kq 199 20 maintain maintain VB cord-010027-r0tl01kq 199 21 upright upright JJ cord-010027-r0tl01kq 199 22 sitting sit VBG cord-010027-r0tl01kq 199 23 posture posture NN cord-010027-r0tl01kq 199 24 during during IN cord-010027-r0tl01kq 199 25 radiographic radiographic JJ cord-010027-r0tl01kq 199 26 investigations investigation NNS cord-010027-r0tl01kq 199 27 . . . cord-010027-r0tl01kq 200 1 While while IN cord-010027-r0tl01kq 200 2 current current JJ cord-010027-r0tl01kq 200 3 market market NN cord-010027-r0tl01kq 200 4 devices device NNS cord-010027-r0tl01kq 200 5 exist exist VBP cord-010027-r0tl01kq 200 6 , , , cord-010027-r0tl01kq 200 7 they -PRON- PRP cord-010027-r0tl01kq 200 8 are be VBP cord-010027-r0tl01kq 200 9 seldom seldom RB cord-010027-r0tl01kq 200 10 used use VBN cord-010027-r0tl01kq 200 11 by by IN cord-010027-r0tl01kq 200 12 radiographers radiographer NNS cord-010027-r0tl01kq 200 13 -particularly -particularly RB cord-010027-r0tl01kq 200 14 in in IN cord-010027-r0tl01kq 200 15 Europe Europe NNP cord-010027-r0tl01kq 200 16 as as IN cord-010027-r0tl01kq 200 17 their -PRON- PRP$ cord-010027-r0tl01kq 200 18 methods method NNS cord-010027-r0tl01kq 200 19 of of IN cord-010027-r0tl01kq 200 20 restraint restraint NN cord-010027-r0tl01kq 200 21 have have VBP cord-010027-r0tl01kq 200 22 been be VBN cord-010027-r0tl01kq 200 23 deemed deem VBN cord-010027-r0tl01kq 200 24 ' ' `` cord-010027-r0tl01kq 200 25 culturally culturally RB cord-010027-r0tl01kq 200 26 unacceptable unacceptable JJ cord-010027-r0tl01kq 200 27 ' ' '' cord-010027-r0tl01kq 200 28 with with IN cord-010027-r0tl01kq 200 29 some some DT cord-010027-r0tl01kq 200 30 claiming claim VBG cord-010027-r0tl01kq 200 31 that that IN cord-010027-r0tl01kq 200 32 they -PRON- PRP cord-010027-r0tl01kq 200 33 are be VBP cord-010027-r0tl01kq 200 34 in in IN cord-010027-r0tl01kq 200 35 violation violation NN cord-010027-r0tl01kq 200 36 of of IN cord-010027-r0tl01kq 200 37 the the DT cord-010027-r0tl01kq 200 38 human human JJ cord-010027-r0tl01kq 200 39 rights right NNS cord-010027-r0tl01kq 200 40 of of IN cord-010027-r0tl01kq 200 41 the the DT cord-010027-r0tl01kq 200 42 child child NN cord-010027-r0tl01kq 200 43 [ [ -LRB- cord-010027-r0tl01kq 200 44 1 1 CD cord-010027-r0tl01kq 200 45 ] ] -RRB- cord-010027-r0tl01kq 200 46 . . . cord-010027-r0tl01kq 201 1 The the DT cord-010027-r0tl01kq 201 2 design design NN cord-010027-r0tl01kq 201 3 challenge challenge NN cord-010027-r0tl01kq 201 4 was be VBD cord-010027-r0tl01kq 201 5 to to TO cord-010027-r0tl01kq 201 6 create create VB cord-010027-r0tl01kq 201 7 devices device NNS cord-010027-r0tl01kq 201 8 that that WDT cord-010027-r0tl01kq 201 9 were be VBD cord-010027-r0tl01kq 201 10 functional functional JJ cord-010027-r0tl01kq 201 11 ( ( -LRB- cord-010027-r0tl01kq 201 12 fit fit JJ cord-010027-r0tl01kq 201 13 for for IN cord-010027-r0tl01kq 201 14 purpose purpose NN cord-010027-r0tl01kq 201 15 [ [ -LRB- cord-010027-r0tl01kq 201 16 2 2 CD cord-010027-r0tl01kq 201 17 ] ] -RRB- cord-010027-r0tl01kq 201 18 , , , cord-010027-r0tl01kq 201 19 radio radio NN cord-010027-r0tl01kq 201 20 - - HYPH cord-010027-r0tl01kq 201 21 lucent lucent NNP cord-010027-r0tl01kq 201 22 , , , cord-010027-r0tl01kq 201 23 compliant compliant JJ cord-010027-r0tl01kq 201 24 with with IN cord-010027-r0tl01kq 201 25 infection infection NN cord-010027-r0tl01kq 201 26 control control NN cord-010027-r0tl01kq 201 27 and and CC cord-010027-r0tl01kq 201 28 easy easy JJ cord-010027-r0tl01kq 201 29 to to TO cord-010027-r0tl01kq 201 30 use use VB cord-010027-r0tl01kq 201 31 ) ) -RRB- cord-010027-r0tl01kq 201 32 while while IN cord-010027-r0tl01kq 201 33 minimising minimise VBG cord-010027-r0tl01kq 201 34 discomfort discomfort NN cord-010027-r0tl01kq 201 35 and and CC cord-010027-r0tl01kq 201 36 intimidation intimidation NN cord-010027-r0tl01kq 201 37 . . . cord-010027-r0tl01kq 202 1 A a DT cord-010027-r0tl01kq 202 2 search search NN cord-010027-r0tl01kq 202 3 of of IN cord-010027-r0tl01kq 202 4 the the DT cord-010027-r0tl01kq 202 5 literature literature NN cord-010027-r0tl01kq 202 6 , , , cord-010027-r0tl01kq 202 7 prior prior JJ cord-010027-r0tl01kq 202 8 art art NN cord-010027-r0tl01kq 202 9 , , , cord-010027-r0tl01kq 202 10 patent patent NN cord-010027-r0tl01kq 202 11 landscape landscape NN cord-010027-r0tl01kq 202 12 and and CC cord-010027-r0tl01kq 202 13 current current JJ cord-010027-r0tl01kq 202 14 market market NN cord-010027-r0tl01kq 202 15 devices device NNS cord-010027-r0tl01kq 202 16 was be VBD cord-010027-r0tl01kq 202 17 performed perform VBN cord-010027-r0tl01kq 202 18 in in IN cord-010027-r0tl01kq 202 19 order order NN cord-010027-r0tl01kq 202 20 to to TO cord-010027-r0tl01kq 202 21 identify identify VB cord-010027-r0tl01kq 202 22 product product NN cord-010027-r0tl01kq 202 23 requirements requirement NNS cord-010027-r0tl01kq 202 24 . . . cord-010027-r0tl01kq 203 1 TRIZ TRIZ NNS cord-010027-r0tl01kq 203 2 methodologies methodology NNS cord-010027-r0tl01kq 203 3 -a -a : cord-010027-r0tl01kq 203 4 problem problem NN cord-010027-r0tl01kq 203 5 solving solving NN cord-010027-r0tl01kq 203 6 , , , cord-010027-r0tl01kq 203 7 analysis analysis NN cord-010027-r0tl01kq 203 8 and and CC cord-010027-r0tl01kq 203 9 forecasting forecasting NN cord-010027-r0tl01kq 203 10 tool tool NN cord-010027-r0tl01kq 203 11 derived derive VBN cord-010027-r0tl01kq 203 12 from from IN cord-010027-r0tl01kq 203 13 the the DT cord-010027-r0tl01kq 203 14 study study NN cord-010027-r0tl01kq 203 15 of of IN cord-010027-r0tl01kq 203 16 patterns pattern NNS cord-010027-r0tl01kq 203 17 of of IN cord-010027-r0tl01kq 203 18 invention invention NN cord-010027-r0tl01kq 203 19 in in IN cord-010027-r0tl01kq 203 20 the the DT cord-010027-r0tl01kq 203 21 global global JJ cord-010027-r0tl01kq 203 22 patent patent NN cord-010027-r0tl01kq 203 23 literature literature NN cord-010027-r0tl01kq 203 24 were be VBD cord-010027-r0tl01kq 203 25 used use VBN cord-010027-r0tl01kq 203 26 to to TO cord-010027-r0tl01kq 203 27 identify identify VB cord-010027-r0tl01kq 203 28 the the DT cord-010027-r0tl01kq 203 29 physical physical JJ cord-010027-r0tl01kq 203 30 contradictions contradiction NNS cord-010027-r0tl01kq 203 31 underlying underlie VBG cord-010027-r0tl01kq 203 32 the the DT cord-010027-r0tl01kq 203 33 design design NN cord-010027-r0tl01kq 203 34 challenge challenge NN cord-010027-r0tl01kq 203 35 and and CC cord-010027-r0tl01kq 203 36 generate generate VB cord-010027-r0tl01kq 203 37 potential potential JJ cord-010027-r0tl01kq 203 38 solutions solution NNS cord-010027-r0tl01kq 203 39 . . . cord-010027-r0tl01kq 204 1 Eight eight CD cord-010027-r0tl01kq 204 2 unique unique JJ cord-010027-r0tl01kq 204 3 concept concept NN cord-010027-r0tl01kq 204 4 designs design NNS cord-010027-r0tl01kq 204 5 were be VBD cord-010027-r0tl01kq 204 6 identified identify VBN cord-010027-r0tl01kq 204 7 from from IN cord-010027-r0tl01kq 204 8 these these DT cord-010027-r0tl01kq 204 9 methods method NNS cord-010027-r0tl01kq 204 10 . . . cord-010027-r0tl01kq 205 1 These these DT cord-010027-r0tl01kq 205 2 were be VBD cord-010027-r0tl01kq 205 3 then then RB cord-010027-r0tl01kq 205 4 evaluated evaluate VBN cord-010027-r0tl01kq 205 5 using use VBG cord-010027-r0tl01kq 205 6 Pugh Pugh NNP cord-010027-r0tl01kq 205 7 Criteria Criteria NNP cord-010027-r0tl01kq 205 8 -a -a , cord-010027-r0tl01kq 205 9 ranking rank VBG cord-010027-r0tl01kq 205 10 system system NN cord-010027-r0tl01kq 205 11 of of IN cord-010027-r0tl01kq 205 12 the the DT cord-010027-r0tl01kq 205 13 relative relative JJ cord-010027-r0tl01kq 205 14 merits merit NNS cord-010027-r0tl01kq 205 15 of of IN cord-010027-r0tl01kq 205 16 each each DT cord-010027-r0tl01kq 205 17 concept concept NN cord-010027-r0tl01kq 205 18 based base VBN cord-010027-r0tl01kq 205 19 on on IN cord-010027-r0tl01kq 205 20 design design NN cord-010027-r0tl01kq 205 21 requirements requirement NNS cord-010027-r0tl01kq 205 22 identified identify VBN cord-010027-r0tl01kq 205 23 . . . cord-010027-r0tl01kq 206 1 Four four CD cord-010027-r0tl01kq 206 2 of of IN cord-010027-r0tl01kq 206 3 the the DT cord-010027-r0tl01kq 206 4 eight eight CD cord-010027-r0tl01kq 206 5 concepts concept NNS cord-010027-r0tl01kq 206 6 were be VBD cord-010027-r0tl01kq 206 7 chosen choose VBN cord-010027-r0tl01kq 206 8 to to TO cord-010027-r0tl01kq 206 9 be be VB cord-010027-r0tl01kq 206 10 prototyped prototype VBN cord-010027-r0tl01kq 206 11 : : : cord-010027-r0tl01kq 206 12 a a DT cord-010027-r0tl01kq 206 13 3-D 3-d JJ cord-010027-r0tl01kq 206 14 printed print VBN cord-010027-r0tl01kq 206 15 seat seat NN cord-010027-r0tl01kq 206 16 , , , cord-010027-r0tl01kq 206 17 a a DT cord-010027-r0tl01kq 206 18 swing swing NN cord-010027-r0tl01kq 206 19 based base VBN cord-010027-r0tl01kq 206 20 template template NN cord-010027-r0tl01kq 206 21 , , , cord-010027-r0tl01kq 206 22 an an DT cord-010027-r0tl01kq 206 23 acrylic acrylic NN cord-010027-r0tl01kq 206 24 - - HYPH cord-010027-r0tl01kq 206 25 based base VBN cord-010027-r0tl01kq 206 26 support support NN cord-010027-r0tl01kq 206 27 and and CC cord-010027-r0tl01kq 206 28 an an DT cord-010027-r0tl01kq 206 29 adaptable adaptable JJ cord-010027-r0tl01kq 206 30 wheelchair wheelchair NN cord-010027-r0tl01kq 206 31 . . . cord-010027-r0tl01kq 207 1 The the DT cord-010027-r0tl01kq 207 2 prototypes prototype NNS cord-010027-r0tl01kq 207 3 were be VBD cord-010027-r0tl01kq 207 4 made make VBN cord-010027-r0tl01kq 207 5 in in IN cord-010027-r0tl01kq 207 6 collaboration collaboration NN cord-010027-r0tl01kq 207 7 with with IN cord-010027-r0tl01kq 207 8 the the DT cord-010027-r0tl01kq 207 9 UCD UCD NNP cord-010027-r0tl01kq 207 10 School School NNP cord-010027-r0tl01kq 207 11 of of IN cord-010027-r0tl01kq 207 12 Engineering Engineering NNP cord-010027-r0tl01kq 207 13 and and CC cord-010027-r0tl01kq 207 14 tested test VBD cord-010027-r0tl01kq 207 15 using use VBG cord-010027-r0tl01kq 207 16 paediatric paediatric JJ cord-010027-r0tl01kq 207 17 phantoms phantom NNS cord-010027-r0tl01kq 207 18 in in IN cord-010027-r0tl01kq 207 19 UCD UCD NNP cord-010027-r0tl01kq 207 20 Radiography Radiography NNP cord-010027-r0tl01kq 207 21 department department NN cord-010027-r0tl01kq 207 22 . . . cord-010027-r0tl01kq 208 1 The the DT cord-010027-r0tl01kq 208 2 final final JJ cord-010027-r0tl01kq 208 3 prototypes prototype NNS cord-010027-r0tl01kq 208 4 will will MD cord-010027-r0tl01kq 208 5 be be VB cord-010027-r0tl01kq 208 6 trialled trialle VBN cord-010027-r0tl01kq 208 7 in in IN cord-010027-r0tl01kq 208 8 Crumlin Crumlin NNP cord-010027-r0tl01kq 208 9 Children Children NNP cord-010027-r0tl01kq 208 10 's 's POS cord-010027-r0tl01kq 208 11 Hospital Hospital NNP cord-010027-r0tl01kq 208 12 with with IN cord-010027-r0tl01kq 208 13 a a DT cord-010027-r0tl01kq 208 14 view view NN cord-010027-r0tl01kq 208 15 to to IN cord-010027-r0tl01kq 208 16 future future JJ cord-010027-r0tl01kq 208 17 use use NN cord-010027-r0tl01kq 208 18 and and CC cord-010027-r0tl01kq 208 19 development development NN cord-010027-r0tl01kq 208 20 . . . cord-010027-r0tl01kq 209 1 Thrombotic thrombotic JJ cord-010027-r0tl01kq 209 2 microangiopathy microangiopathy NN cord-010027-r0tl01kq 209 3 ( ( -LRB- cord-010027-r0tl01kq 209 4 TMA TMA NNP cord-010027-r0tl01kq 209 5 ) ) -RRB- cord-010027-r0tl01kq 209 6 is be VBZ cord-010027-r0tl01kq 209 7 a a DT cord-010027-r0tl01kq 209 8 pathology pathology NN cord-010027-r0tl01kq 209 9 that that WDT cord-010027-r0tl01kq 209 10 results result VBZ cord-010027-r0tl01kq 209 11 in in IN cord-010027-r0tl01kq 209 12 thrombosis thrombosis NN cord-010027-r0tl01kq 209 13 of of IN cord-010027-r0tl01kq 209 14 capillaries capillary NNS cord-010027-r0tl01kq 209 15 and and CC cord-010027-r0tl01kq 209 16 arterioles arteriole NNS cord-010027-r0tl01kq 209 17 due due JJ cord-010027-r0tl01kq 209 18 to to IN cord-010027-r0tl01kq 209 19 endothelial endothelial JJ cord-010027-r0tl01kq 209 20 injury injury NN cord-010027-r0tl01kq 209 21 . . . cord-010027-r0tl01kq 210 1 It -PRON- PRP cord-010027-r0tl01kq 210 2 is be VBZ cord-010027-r0tl01kq 210 3 usually usually RB cord-010027-r0tl01kq 210 4 characterized characterize VBN cord-010027-r0tl01kq 210 5 by by IN cord-010027-r0tl01kq 210 6 an an DT cord-010027-r0tl01kq 210 7 atypical atypical JJ cord-010027-r0tl01kq 210 8 haemolytic haemolytic JJ cord-010027-r0tl01kq 210 9 syndrome syndrome NN cord-010027-r0tl01kq 210 10 ( ( -LRB- cord-010027-r0tl01kq 210 11 aHUS aHUS NNP cord-010027-r0tl01kq 210 12 ) ) -RRB- cord-010027-r0tl01kq 210 13 or or CC cord-010027-r0tl01kq 210 14 thrombotic thrombotic JJ cord-010027-r0tl01kq 210 15 thrombocytopaenic thrombocytopaenic NNP cord-010027-r0tl01kq 210 16 purpura purpura NN cord-010027-r0tl01kq 210 17 ( ( -LRB- cord-010027-r0tl01kq 210 18 TTP TTP NNP cord-010027-r0tl01kq 210 19 ) ) -RRB- cord-010027-r0tl01kq 210 20 . . . cord-010027-r0tl01kq 211 1 TMA TMA NNP cord-010027-r0tl01kq 211 2 is be VBZ cord-010027-r0tl01kq 211 3 considered consider VBN cord-010027-r0tl01kq 211 4 to to TO cord-010027-r0tl01kq 211 5 be be VB cord-010027-r0tl01kq 211 6 caused cause VBN cord-010027-r0tl01kq 211 7 by by IN cord-010027-r0tl01kq 211 8 infections infection NNS cord-010027-r0tl01kq 211 9 , , , cord-010027-r0tl01kq 211 10 drugs drug NNS cord-010027-r0tl01kq 211 11 , , , cord-010027-r0tl01kq 211 12 autoimmunity autoimmunity NN cord-010027-r0tl01kq 211 13 , , , cord-010027-r0tl01kq 211 14 tumours tumour NNS cord-010027-r0tl01kq 211 15 , , , cord-010027-r0tl01kq 211 16 pregnancy pregnancy NN cord-010027-r0tl01kq 211 17 , , , cord-010027-r0tl01kq 211 18 transplants transplant NNS cord-010027-r0tl01kq 211 19 and and CC cord-010027-r0tl01kq 211 20 inherited inherit VBN cord-010027-r0tl01kq 211 21 abnormalities abnormality NNS cord-010027-r0tl01kq 211 22 involving involve VBG cord-010027-r0tl01kq 211 23 the the DT cord-010027-r0tl01kq 211 24 alternate alternate JJ cord-010027-r0tl01kq 211 25 complement complement NN cord-010027-r0tl01kq 211 26 pathway pathway NN cord-010027-r0tl01kq 211 27 . . . cord-010027-r0tl01kq 212 1 This this DT cord-010027-r0tl01kq 212 2 presentation presentation NN cord-010027-r0tl01kq 212 3 describes describe VBZ cord-010027-r0tl01kq 212 4 the the DT cord-010027-r0tl01kq 212 5 pathology pathology NN cord-010027-r0tl01kq 212 6 of of IN cord-010027-r0tl01kq 212 7 TMA TMA NNP cord-010027-r0tl01kq 212 8 . . . cord-010027-r0tl01kq 213 1 It -PRON- PRP cord-010027-r0tl01kq 213 2 includes include VBZ cord-010027-r0tl01kq 213 3 a a DT cord-010027-r0tl01kq 213 4 retrospective retrospective JJ cord-010027-r0tl01kq 213 5 15 15 CD cord-010027-r0tl01kq 213 6 year year NN cord-010027-r0tl01kq 213 7 study study NN cord-010027-r0tl01kq 213 8 ( ( -LRB- cord-010027-r0tl01kq 213 9 1999 1999 CD cord-010027-r0tl01kq 213 10 -2013 -2013 NN cord-010027-r0tl01kq 213 11 ) ) -RRB- cord-010027-r0tl01kq 213 12 of of IN cord-010027-r0tl01kq 213 13 all all DT cord-010027-r0tl01kq 213 14 renal renal JJ cord-010027-r0tl01kq 213 15 biopsies biopsy NNS cord-010027-r0tl01kq 213 16 reported report VBN cord-010027-r0tl01kq 213 17 by by IN cord-010027-r0tl01kq 213 18 one one CD cord-010027-r0tl01kq 213 19 pathologist pathologist NN cord-010027-r0tl01kq 213 20 . . . cord-010027-r0tl01kq 214 1 All all DT cord-010027-r0tl01kq 214 2 renal renal JJ cord-010027-r0tl01kq 214 3 biopsy biopsy NN cord-010027-r0tl01kq 214 4 request request NN cord-010027-r0tl01kq 214 5 forms form NNS cord-010027-r0tl01kq 214 6 and and CC cord-010027-r0tl01kq 214 7 reports report NNS cord-010027-r0tl01kq 214 8 , , , cord-010027-r0tl01kq 214 9 where where WRB cord-010027-r0tl01kq 214 10 cases case NNS cord-010027-r0tl01kq 214 11 included include VBD cord-010027-r0tl01kq 214 12 light light NN cord-010027-r0tl01kq 214 13 ( ( -LRB- cord-010027-r0tl01kq 214 14 LM LM NNP cord-010027-r0tl01kq 214 15 ) ) -RRB- cord-010027-r0tl01kq 214 16 , , , cord-010027-r0tl01kq 214 17 fluorescence(FM fluorescence(FM NNP cord-010027-r0tl01kq 214 18 ) ) -RRB- cord-010027-r0tl01kq 214 19 and and CC cord-010027-r0tl01kq 214 20 electron electron NN cord-010027-r0tl01kq 214 21 microscopy(EM microscopy(em NN cord-010027-r0tl01kq 214 22 ) ) -RRB- cord-010027-r0tl01kq 214 23 , , , cord-010027-r0tl01kq 214 24 were be VBD cord-010027-r0tl01kq 214 25 reviewed review VBN cord-010027-r0tl01kq 214 26 . . . cord-010027-r0tl01kq 215 1 Cases case NNS cord-010027-r0tl01kq 215 2 without without IN cord-010027-r0tl01kq 215 3 all all DT cord-010027-r0tl01kq 215 4 3 3 CD cord-010027-r0tl01kq 215 5 modalitIes modalities NN cord-010027-r0tl01kq 215 6 ( ( -LRB- cord-010027-r0tl01kq 215 7 LM LM NNP cord-010027-r0tl01kq 215 8 , , , cord-010027-r0tl01kq 215 9 FM FM NNP cord-010027-r0tl01kq 215 10 , , , cord-010027-r0tl01kq 215 11 and and CC cord-010027-r0tl01kq 215 12 EM EM NNP cord-010027-r0tl01kq 215 13 ) ) -RRB- cord-010027-r0tl01kq 215 14 were be VBD cord-010027-r0tl01kq 215 15 excluded exclude VBN cord-010027-r0tl01kq 215 16 . . . cord-010027-r0tl01kq 216 1 6639 6639 CD cord-010027-r0tl01kq 216 2 biopsies biopsy NNS cord-010027-r0tl01kq 216 3 were be VBD cord-010027-r0tl01kq 216 4 reported report VBN cord-010027-r0tl01kq 216 5 in in IN cord-010027-r0tl01kq 216 6 the the DT cord-010027-r0tl01kq 216 7 study study NN cord-010027-r0tl01kq 216 8 period period NN cord-010027-r0tl01kq 216 9 ( ( -LRB- cord-010027-r0tl01kq 216 10 328 328 CD cord-010027-r0tl01kq 216 11 in in IN cord-010027-r0tl01kq 216 12 1999 1999 CD cord-010027-r0tl01kq 216 13 ( ( -LRB- cord-010027-r0tl01kq 216 14 328 328 CD cord-010027-r0tl01kq 216 15 in in IN cord-010027-r0tl01kq 216 16 to to IN cord-010027-r0tl01kq 216 17 629 629 CD cord-010027-r0tl01kq 216 18 IN in IN cord-010027-r0tl01kq 216 19 2013 2013 CD cord-010027-r0tl01kq 216 20 . . . cord-010027-r0tl01kq 217 1 2105 2105 CD cord-010027-r0tl01kq 217 2 were be VBD cord-010027-r0tl01kq 217 3 transplant transplant NN cord-010027-r0tl01kq 217 4 biopsies biopsy NNS cord-010027-r0tl01kq 217 5 . . . cord-010027-r0tl01kq 218 1 284 284 CD cord-010027-r0tl01kq 218 2 biopsies biopsy NNS cord-010027-r0tl01kq 218 3 were be VBD cord-010027-r0tl01kq 218 4 insufficient insufficient JJ cord-010027-r0tl01kq 218 5 ( ( -LRB- cord-010027-r0tl01kq 218 6 LM LM NNP cord-010027-r0tl01kq 218 7 , , , cord-010027-r0tl01kq 218 8 FM FM NNP cord-010027-r0tl01kq 218 9 and and CC cord-010027-r0tl01kq 218 10 EM EM NNP cord-010027-r0tl01kq 218 11 all all DT cord-010027-r0tl01kq 218 12 not not RB cord-010027-r0tl01kq 218 13 possible possible JJ cord-010027-r0tl01kq 218 14 . . . cord-010027-r0tl01kq 219 1 This this DT cord-010027-r0tl01kq 219 2 resulted result VBD cord-010027-r0tl01kq 219 3 in in IN cord-010027-r0tl01kq 219 4 4250 4250 CD cord-010027-r0tl01kq 219 5 native native JJ cord-010027-r0tl01kq 219 6 renal renal JJ cord-010027-r0tl01kq 219 7 biopsies biopsy NNS cord-010027-r0tl01kq 219 8 as as IN cord-010027-r0tl01kq 219 9 the the DT cord-010027-r0tl01kq 219 10 study study NN cord-010027-r0tl01kq 219 11 group group NN cord-010027-r0tl01kq 219 12 . . . cord-010027-r0tl01kq 220 1 Following follow VBG cord-010027-r0tl01kq 220 2 review review NN cord-010027-r0tl01kq 220 3 of of IN cord-010027-r0tl01kq 220 4 the the DT cord-010027-r0tl01kq 220 5 reports report NNS cord-010027-r0tl01kq 220 6 641 641 CD cord-010027-r0tl01kq 220 7 cases case NNS cord-010027-r0tl01kq 220 8 were be VBD cord-010027-r0tl01kq 220 9 reported report VBN cord-010027-r0tl01kq 220 10 as as IN cord-010027-r0tl01kq 220 11 TMA TMA NNP cord-010027-r0tl01kq 220 12 . . . cord-010027-r0tl01kq 221 1 66 66 CD cord-010027-r0tl01kq 221 2 were be VBD cord-010027-r0tl01kq 221 3 associated associate VBN cord-010027-r0tl01kq 221 4 with with IN cord-010027-r0tl01kq 221 5 thin thin JJ cord-010027-r0tl01kq 221 6 membrane membrane NN cord-010027-r0tl01kq 221 7 nephropathy nephropathy NN cord-010027-r0tl01kq 221 8 , , , cord-010027-r0tl01kq 221 9 41 41 CD cord-010027-r0tl01kq 221 10 with with IN cord-010027-r0tl01kq 221 11 minimal minimal JJ cord-010027-r0tl01kq 221 12 change change NN cord-010027-r0tl01kq 221 13 disease disease NN cord-010027-r0tl01kq 221 14 and and CC cord-010027-r0tl01kq 221 15 24 24 CD cord-010027-r0tl01kq 221 16 with with IN cord-010027-r0tl01kq 221 17 plasma plasma NN cord-010027-r0tl01kq 221 18 cell cell NN cord-010027-r0tl01kq 221 19 dyscrasia/ dyscrasia/ CD cord-010027-r0tl01kq 221 20 B b NN cord-010027-r0tl01kq 221 21 cell cell NN cord-010027-r0tl01kq 221 22 malignancy malignancy NN cord-010027-r0tl01kq 221 23 . . . cord-010027-r0tl01kq 222 1 This this DT cord-010027-r0tl01kq 222 2 resulted result VBD cord-010027-r0tl01kq 222 3 in in IN cord-010027-r0tl01kq 222 4 510 510 CD cord-010027-r0tl01kq 222 5 cases case NNS cord-010027-r0tl01kq 222 6 with with IN cord-010027-r0tl01kq 222 7 TMA TMA NNP cord-010027-r0tl01kq 222 8 as as IN cord-010027-r0tl01kq 222 9 the the DT cord-010027-r0tl01kq 222 10 only only JJ cord-010027-r0tl01kq 222 11 pathology pathology NN cord-010027-r0tl01kq 222 12 reported report VBD cord-010027-r0tl01kq 222 13 which which WDT cord-010027-r0tl01kq 222 14 represents represent VBZ cord-010027-r0tl01kq 222 15 12 12 CD cord-010027-r0tl01kq 222 16 % % NN cord-010027-r0tl01kq 222 17 of of IN cord-010027-r0tl01kq 222 18 all all DT cord-010027-r0tl01kq 222 19 adequate adequate JJ cord-010027-r0tl01kq 222 20 native native JJ cord-010027-r0tl01kq 222 21 medical medical JJ cord-010027-r0tl01kq 222 22 renal renal JJ cord-010027-r0tl01kq 222 23 biopsies biopsy NNS cord-010027-r0tl01kq 222 24 . . . cord-010027-r0tl01kq 223 1 Clinical clinical JJ cord-010027-r0tl01kq 223 2 indications indication NNS cord-010027-r0tl01kq 223 3 included include VBD cord-010027-r0tl01kq 223 4 proteinuria proteinuria NN cord-010027-r0tl01kq 223 5 in in IN cord-010027-r0tl01kq 223 6 73 73 CD cord-010027-r0tl01kq 223 7 % % NN cord-010027-r0tl01kq 223 8 , , , cord-010027-r0tl01kq 223 9 nephrotic nephrotic JJ cord-010027-r0tl01kq 223 10 syndrome syndrome NN cord-010027-r0tl01kq 223 11 in in IN cord-010027-r0tl01kq 223 12 15 15 CD cord-010027-r0tl01kq 223 13 % % NN cord-010027-r0tl01kq 223 14 , , , cord-010027-r0tl01kq 223 15 increased increase VBN cord-010027-r0tl01kq 223 16 creatinine creatinine NN cord-010027-r0tl01kq 223 17 in in IN cord-010027-r0tl01kq 223 18 43 43 CD cord-010027-r0tl01kq 223 19 % % NN cord-010027-r0tl01kq 223 20 , , , cord-010027-r0tl01kq 223 21 increased increase VBN cord-010027-r0tl01kq 223 22 blood blood NN cord-010027-r0tl01kq 223 23 pressure pressure NN cord-010027-r0tl01kq 223 24 in in IN cord-010027-r0tl01kq 223 25 55 55 CD cord-010027-r0tl01kq 223 26 % % NN cord-010027-r0tl01kq 223 27 and and CC cord-010027-r0tl01kq 223 28 haematuria haematuria NN cord-010027-r0tl01kq 223 29 in in IN cord-010027-r0tl01kq 223 30 43 43 CD cord-010027-r0tl01kq 223 31 % % NN cord-010027-r0tl01kq 223 32 of of IN cord-010027-r0tl01kq 223 33 the the DT cord-010027-r0tl01kq 223 34 cases case NNS cord-010027-r0tl01kq 223 35 . . . cord-010027-r0tl01kq 224 1 Acute acute JJ cord-010027-r0tl01kq 224 2 renal renal JJ cord-010027-r0tl01kq 224 3 failure failure NN cord-010027-r0tl01kq 224 4 was be VBD cord-010027-r0tl01kq 224 5 described describe VBN cord-010027-r0tl01kq 224 6 in in IN cord-010027-r0tl01kq 224 7 10 10 CD cord-010027-r0tl01kq 224 8 % % NN cord-010027-r0tl01kq 224 9 and and CC cord-010027-r0tl01kq 224 10 HUS HUS NNP cord-010027-r0tl01kq 224 11 in in IN cord-010027-r0tl01kq 224 12 just just RB cord-010027-r0tl01kq 224 13 1 1 CD cord-010027-r0tl01kq 224 14 % % NN cord-010027-r0tl01kq 224 15 of of IN cord-010027-r0tl01kq 224 16 the the DT cord-010027-r0tl01kq 224 17 cases case NNS cord-010027-r0tl01kq 224 18 . . . cord-010027-r0tl01kq 225 1 Pathological pathological JJ cord-010027-r0tl01kq 225 2 changes change NNS cord-010027-r0tl01kq 225 3 were be VBD cord-010027-r0tl01kq 225 4 predominently predominently RB cord-010027-r0tl01kq 225 5 arteriolar arteriolar JJ cord-010027-r0tl01kq 225 6 sclerosis sclerosis NN cord-010027-r0tl01kq 225 7 and and CC cord-010027-r0tl01kq 225 8 glomerular glomerular JJ cord-010027-r0tl01kq 225 9 double double JJ cord-010027-r0tl01kq 225 10 contours contour NNS cord-010027-r0tl01kq 225 11 on on IN cord-010027-r0tl01kq 225 12 LM LM NNP cord-010027-r0tl01kq 225 13 with with IN cord-010027-r0tl01kq 225 14 chronic chronic JJ cord-010027-r0tl01kq 225 15 subendothelial subendothelial JJ cord-010027-r0tl01kq 225 16 injury injury NN cord-010027-r0tl01kq 225 17 on on IN cord-010027-r0tl01kq 225 18 EM EM NNP cord-010027-r0tl01kq 225 19 . . . cord-010027-r0tl01kq 226 1 The the DT cord-010027-r0tl01kq 226 2 conclusions conclusion NNS cord-010027-r0tl01kq 226 3 of of IN cord-010027-r0tl01kq 226 4 this this DT cord-010027-r0tl01kq 226 5 presentation presentation NN cord-010027-r0tl01kq 226 6 are be VBP cord-010027-r0tl01kq 226 7 1 1 CD cord-010027-r0tl01kq 226 8 . . . cord-010027-r0tl01kq 227 1 TMA TMA NNP cord-010027-r0tl01kq 227 2 is be VBZ cord-010027-r0tl01kq 227 3 overwhelmingly overwhelmingly RB cord-010027-r0tl01kq 227 4 a a DT cord-010027-r0tl01kq 227 5 chronic chronic JJ cord-010027-r0tl01kq 227 6 lesion lesion NN cord-010027-r0tl01kq 227 7 as as IN cord-010027-r0tl01kq 227 8 seen see VBN cord-010027-r0tl01kq 227 9 in in IN cord-010027-r0tl01kq 227 10 renal renal JJ cord-010027-r0tl01kq 227 11 biopsy biopsy NN cord-010027-r0tl01kq 227 12 pathology pathology NN cord-010027-r0tl01kq 227 13 . . . cord-010027-r0tl01kq 228 1 2 2 LS cord-010027-r0tl01kq 228 2 . . . cord-010027-r0tl01kq 229 1 It -PRON- PRP cord-010027-r0tl01kq 229 2 is be VBZ cord-010027-r0tl01kq 229 3 a a DT cord-010027-r0tl01kq 229 4 very very RB cord-010027-r0tl01kq 229 5 common common JJ cord-010027-r0tl01kq 229 6 pattern pattern NN cord-010027-r0tl01kq 229 7 of of IN cord-010027-r0tl01kq 229 8 injury injury NN cord-010027-r0tl01kq 229 9 . . . cord-010027-r0tl01kq 230 1 3 3 LS cord-010027-r0tl01kq 230 2 . . . cord-010027-r0tl01kq 231 1 It -PRON- PRP cord-010027-r0tl01kq 231 2 is be VBZ cord-010027-r0tl01kq 231 3 not not RB cord-010027-r0tl01kq 231 4 usually usually RB cord-010027-r0tl01kq 231 5 associated associate VBN cord-010027-r0tl01kq 231 6 with with IN cord-010027-r0tl01kq 231 7 clinical clinical JJ cord-010027-r0tl01kq 231 8 HUS hus NN cord-010027-r0tl01kq 231 9 or or CC cord-010027-r0tl01kq 231 10 TTP ttp NN cord-010027-r0tl01kq 231 11 features feature NNS cord-010027-r0tl01kq 231 12 at at IN cord-010027-r0tl01kq 231 13 presentation presentation NN cord-010027-r0tl01kq 231 14 . . . cord-010027-r0tl01kq 232 1 The the DT cord-010027-r0tl01kq 232 2 era era NN cord-010027-r0tl01kq 232 3 of of IN cord-010027-r0tl01kq 232 4 targeted target VBN cord-010027-r0tl01kq 232 5 cancer cancer NN cord-010027-r0tl01kq 232 6 therapeutics therapeutic NNS cord-010027-r0tl01kq 232 7 has have VBZ cord-010027-r0tl01kq 232 8 brought bring VBN cord-010027-r0tl01kq 232 9 forth forth RP cord-010027-r0tl01kq 232 10 new new JJ cord-010027-r0tl01kq 232 11 challenges challenge NNS cord-010027-r0tl01kq 232 12 for for IN cord-010027-r0tl01kq 232 13 molecular molecular JJ cord-010027-r0tl01kq 232 14 diagnostic diagnostic JJ cord-010027-r0tl01kq 232 15 laboratories laboratory NNS cord-010027-r0tl01kq 232 16 . . . cord-010027-r0tl01kq 233 1 The the DT cord-010027-r0tl01kq 233 2 list list NN cord-010027-r0tl01kq 233 3 of of IN cord-010027-r0tl01kq 233 4 genes gene NNS cord-010027-r0tl01kq 233 5 , , , cord-010027-r0tl01kq 233 6 and and CC cord-010027-r0tl01kq 233 7 indeed indeed RB cord-010027-r0tl01kq 233 8 specific specific JJ cord-010027-r0tl01kq 233 9 mutations mutation NNS cord-010027-r0tl01kq 233 10 , , , cord-010027-r0tl01kq 233 11 that that WDT cord-010027-r0tl01kq 233 12 predict predict VBP cord-010027-r0tl01kq 233 13 drug drug NN cord-010027-r0tl01kq 233 14 responses response NNS cord-010027-r0tl01kq 233 15 keeps keep VBZ cord-010027-r0tl01kq 233 16 growing grow VBG cord-010027-r0tl01kq 233 17 , , , cord-010027-r0tl01kq 233 18 and and CC cord-010027-r0tl01kq 233 19 with with IN cord-010027-r0tl01kq 233 20 it -PRON- PRP cord-010027-r0tl01kq 233 21 grows grow VBZ cord-010027-r0tl01kq 233 22 the the DT cord-010027-r0tl01kq 233 23 demand demand NN cord-010027-r0tl01kq 233 24 for for IN cord-010027-r0tl01kq 233 25 molecular molecular JJ cord-010027-r0tl01kq 233 26 sub sub NN cord-010027-r0tl01kq 233 27 - - NN cord-010027-r0tl01kq 233 28 classification classification NN cord-010027-r0tl01kq 233 29 of of IN cord-010027-r0tl01kq 233 30 tumors tumor NNS cord-010027-r0tl01kq 233 31 . . . cord-010027-r0tl01kq 234 1 In in IN cord-010027-r0tl01kq 234 2 colorectal colorectal JJ cord-010027-r0tl01kq 234 3 carcinoma carcinoma NN cord-010027-r0tl01kq 234 4 , , , cord-010027-r0tl01kq 234 5 for for IN cord-010027-r0tl01kq 234 6 example example NN cord-010027-r0tl01kq 234 7 , , , cord-010027-r0tl01kq 234 8 recent recent JJ cord-010027-r0tl01kq 234 9 studies study NNS cord-010027-r0tl01kq 234 10 support support VBP cord-010027-r0tl01kq 234 11 expanding expand VBG cord-010027-r0tl01kq 234 12 testing testing NN cord-010027-r0tl01kq 234 13 beyond beyond IN cord-010027-r0tl01kq 234 14 KRAS kra NNS cord-010027-r0tl01kq 234 15 to to TO cord-010027-r0tl01kq 234 16 include include VB cord-010027-r0tl01kq 234 17 NRAS NRAS NNP cord-010027-r0tl01kq 234 18 and and CC cord-010027-r0tl01kq 234 19 BRAF BRAF NNP cord-010027-r0tl01kq 234 20 in in IN cord-010027-r0tl01kq 234 21 predicting predict VBG cord-010027-r0tl01kq 234 22 resistance resistance NN cord-010027-r0tl01kq 234 23 to to IN cord-010027-r0tl01kq 234 24 EGFR EGFR NNP cord-010027-r0tl01kq 234 25 - - HYPH cord-010027-r0tl01kq 234 26 targeted target VBN cord-010027-r0tl01kq 234 27 therapies therapy NNS cord-010027-r0tl01kq 234 28 . . . cord-010027-r0tl01kq 235 1 Similarly similarly RB cord-010027-r0tl01kq 235 2 , , , cord-010027-r0tl01kq 235 3 in in IN cord-010027-r0tl01kq 235 4 non non JJ cord-010027-r0tl01kq 235 5 - - JJ cord-010027-r0tl01kq 235 6 small small JJ cord-010027-r0tl01kq 235 7 cell cell NN cord-010027-r0tl01kq 235 8 lung lung NN cord-010027-r0tl01kq 235 9 carcinoma carcinoma NN cord-010027-r0tl01kq 235 10 standard standard JJ cord-010027-r0tl01kq 235 11 screening screening NN cord-010027-r0tl01kq 235 12 for for IN cord-010027-r0tl01kq 235 13 EGFR EGFR NNP cord-010027-r0tl01kq 235 14 mutations mutation NNS cord-010027-r0tl01kq 235 15 and and CC cord-010027-r0tl01kq 235 16 ALK ALK NNP cord-010027-r0tl01kq 235 17 gene gene NN cord-010027-r0tl01kq 235 18 fusions fusion NNS cord-010027-r0tl01kq 235 19 may may MD cord-010027-r0tl01kq 235 20 be be VB cord-010027-r0tl01kq 235 21 insufficient insufficient JJ cord-010027-r0tl01kq 235 22 when when WRB cord-010027-r0tl01kq 235 23 actionable actionable JJ cord-010027-r0tl01kq 235 24 alterations alteration NNS cord-010027-r0tl01kq 235 25 involving involve VBG cord-010027-r0tl01kq 235 26 ROS1 ROS1 NNP cord-010027-r0tl01kq 235 27 , , , cord-010027-r0tl01kq 235 28 RET RET NNP cord-010027-r0tl01kq 235 29 , , , cord-010027-r0tl01kq 235 30 HER2 HER2 NNP cord-010027-r0tl01kq 235 31 , , , cord-010027-r0tl01kq 235 32 MET MET NNP cord-010027-r0tl01kq 235 33 , , , cord-010027-r0tl01kq 235 34 BRAF BRAF NNP cord-010027-r0tl01kq 235 35 and and CC cord-010027-r0tl01kq 235 36 other other JJ cord-010027-r0tl01kq 235 37 genes gene NNS cord-010027-r0tl01kq 235 38 are be VBP cord-010027-r0tl01kq 235 39 being be VBG cord-010027-r0tl01kq 235 40 targeted target VBN cord-010027-r0tl01kq 235 41 ( ( -LRB- cord-010027-r0tl01kq 235 42 successfully successfully RB cord-010027-r0tl01kq 235 43 ) ) -RRB- cord-010027-r0tl01kq 235 44 in in IN cord-010027-r0tl01kq 235 45 ongoing ongoing JJ cord-010027-r0tl01kq 235 46 clinical clinical JJ cord-010027-r0tl01kq 235 47 trials trial NNS cord-010027-r0tl01kq 235 48 . . . cord-010027-r0tl01kq 236 1 Fortunately fortunately RB cord-010027-r0tl01kq 236 2 , , , cord-010027-r0tl01kq 236 3 the the DT cord-010027-r0tl01kq 236 4 introduction introduction NN cord-010027-r0tl01kq 236 5 of of IN cord-010027-r0tl01kq 236 6 next next JJ cord-010027-r0tl01kq 236 7 - - HYPH cord-010027-r0tl01kq 236 8 generation generation NN cord-010027-r0tl01kq 236 9 sequencing sequencing NN cord-010027-r0tl01kq 236 10 ( ( -LRB- cord-010027-r0tl01kq 236 11 NGS NGS NNP cord-010027-r0tl01kq 236 12 ) ) -RRB- cord-010027-r0tl01kq 236 13 into into IN cord-010027-r0tl01kq 236 14 the the DT cord-010027-r0tl01kq 236 15 clinical clinical JJ cord-010027-r0tl01kq 236 16 laboratory laboratory NN cord-010027-r0tl01kq 236 17 is be VBZ cord-010027-r0tl01kq 236 18 meeting meet VBG cord-010027-r0tl01kq 236 19 the the DT cord-010027-r0tl01kq 236 20 demand demand NN cord-010027-r0tl01kq 236 21 . . . cord-010027-r0tl01kq 237 1 Due due IN cord-010027-r0tl01kq 237 2 to to IN cord-010027-r0tl01kq 237 3 its -PRON- PRP$ cord-010027-r0tl01kq 237 4 quantitative quantitative JJ cord-010027-r0tl01kq 237 5 output output NN cord-010027-r0tl01kq 237 6 , , , cord-010027-r0tl01kq 237 7 NGS NGS NNP cord-010027-r0tl01kq 237 8 not not RB cord-010027-r0tl01kq 237 9 only only RB cord-010027-r0tl01kq 237 10 provides provide VBZ cord-010027-r0tl01kq 237 11 precise precise JJ cord-010027-r0tl01kq 237 12 mutant mutant JJ cord-010027-r0tl01kq 237 13 allele allele NN cord-010027-r0tl01kq 237 14 ratios ratio NNS cord-010027-r0tl01kq 237 15 , , , cord-010027-r0tl01kq 237 16 but but CC cord-010027-r0tl01kq 237 17 it -PRON- PRP cord-010027-r0tl01kq 237 18 can can MD cord-010027-r0tl01kq 237 19 also also RB cord-010027-r0tl01kq 237 20 be be VB cord-010027-r0tl01kq 237 21 used use VBN cord-010027-r0tl01kq 237 22 to to TO cord-010027-r0tl01kq 237 23 detect detect VB cord-010027-r0tl01kq 237 24 gene gene NN cord-010027-r0tl01kq 237 25 gains gain NNS cord-010027-r0tl01kq 237 26 and and CC cord-010027-r0tl01kq 237 27 losses loss NNS cord-010027-r0tl01kq 237 28 . . . cord-010027-r0tl01kq 238 1 Furthermore furthermore RB cord-010027-r0tl01kq 238 2 , , , cord-010027-r0tl01kq 238 3 when when WRB cord-010027-r0tl01kq 238 4 applied apply VBN cord-010027-r0tl01kq 238 5 to to IN cord-010027-r0tl01kq 238 6 RNA RNA NNP cord-010027-r0tl01kq 238 7 , , , cord-010027-r0tl01kq 238 8 NGS NGS NNP cord-010027-r0tl01kq 238 9 supports support VBZ cord-010027-r0tl01kq 238 10 the the DT cord-010027-r0tl01kq 238 11 detection detection NN cord-010027-r0tl01kq 238 12 of of IN cord-010027-r0tl01kq 238 13 gene gene NN cord-010027-r0tl01kq 238 14 fusions fusion NNS cord-010027-r0tl01kq 238 15 and and CC cord-010027-r0tl01kq 238 16 serves serve VBZ cord-010027-r0tl01kq 238 17 in in IN cord-010027-r0tl01kq 238 18 assessing assess VBG cord-010027-r0tl01kq 238 19 gene gene NN cord-010027-r0tl01kq 238 20 expression expression NN cord-010027-r0tl01kq 238 21 levels level NNS cord-010027-r0tl01kq 238 22 . . . cord-010027-r0tl01kq 239 1 While while IN cord-010027-r0tl01kq 239 2 NGS NGS NNP cord-010027-r0tl01kq 239 3 is be VBZ cord-010027-r0tl01kq 239 4 a a DT cord-010027-r0tl01kq 239 5 powerful powerful JJ cord-010027-r0tl01kq 239 6 tool tool NN cord-010027-r0tl01kq 239 7 for for IN cord-010027-r0tl01kq 239 8 molecularly molecularly RB cord-010027-r0tl01kq 239 9 characterizing characterize VBG cord-010027-r0tl01kq 239 10 solid solid JJ cord-010027-r0tl01kq 239 11 tumors tumor NNS cord-010027-r0tl01kq 239 12 , , , cord-010027-r0tl01kq 239 13 the the DT cord-010027-r0tl01kq 239 14 quality quality NN cord-010027-r0tl01kq 239 15 of of IN cord-010027-r0tl01kq 239 16 the the DT cord-010027-r0tl01kq 239 17 results result NNS cord-010027-r0tl01kq 239 18 in in IN cord-010027-r0tl01kq 239 19 large large JJ cord-010027-r0tl01kq 239 20 part part NN cord-010027-r0tl01kq 239 21 rests rest VBZ cord-010027-r0tl01kq 239 22 on on IN cord-010027-r0tl01kq 239 23 the the DT cord-010027-r0tl01kq 239 24 selection selection NN cord-010027-r0tl01kq 239 25 of of IN cord-010027-r0tl01kq 239 26 appropriate appropriate JJ cord-010027-r0tl01kq 239 27 input input NN cord-010027-r0tl01kq 239 28 material material NN cord-010027-r0tl01kq 239 29 ; ; : cord-010027-r0tl01kq 239 30 therefore therefore RB cord-010027-r0tl01kq 239 31 , , , cord-010027-r0tl01kq 239 32 review review NN cord-010027-r0tl01kq 239 33 by by IN cord-010027-r0tl01kq 239 34 a a DT cord-010027-r0tl01kq 239 35 pathologist pathologist NN cord-010027-r0tl01kq 239 36 prior prior RB cord-010027-r0tl01kq 239 37 to to IN cord-010027-r0tl01kq 239 38 testing testing NN cord-010027-r0tl01kq 239 39 remains remain VBZ cord-010027-r0tl01kq 239 40 a a DT cord-010027-r0tl01kq 239 41 cornerstone cornerstone NN cord-010027-r0tl01kq 239 42 to to IN cord-010027-r0tl01kq 239 43 success success NN cord-010027-r0tl01kq 239 44 . . . cord-010027-r0tl01kq 240 1 Other other JJ cord-010027-r0tl01kq 240 2 growing grow VBG cord-010027-r0tl01kq 240 3 uses use NNS cord-010027-r0tl01kq 240 4 of of IN cord-010027-r0tl01kq 240 5 NGS NGS NNP cord-010027-r0tl01kq 240 6 include include VBP cord-010027-r0tl01kq 240 7 monitoring monitor VBG cord-010027-r0tl01kq 240 8 minimal minimal JJ cord-010027-r0tl01kq 240 9 residual residual JJ cord-010027-r0tl01kq 240 10 disease disease NN cord-010027-r0tl01kq 240 11 in in IN cord-010027-r0tl01kq 240 12 the the DT cord-010027-r0tl01kq 240 13 setting setting NN cord-010027-r0tl01kq 240 14 of of IN cord-010027-r0tl01kq 240 15 hematologic hematologic JJ cord-010027-r0tl01kq 240 16 malignancies malignancy NNS cord-010027-r0tl01kq 240 17 , , , cord-010027-r0tl01kq 240 18 and and CC cord-010027-r0tl01kq 240 19 in in IN cord-010027-r0tl01kq 240 20 the the DT cord-010027-r0tl01kq 240 21 detection detection NN cord-010027-r0tl01kq 240 22 of of IN cord-010027-r0tl01kq 240 23 targetable targetable JJ cord-010027-r0tl01kq 240 24 mutations mutation NNS cord-010027-r0tl01kq 240 25 in in IN cord-010027-r0tl01kq 240 26 cell cell NN cord-010027-r0tl01kq 240 27 - - HYPH cord-010027-r0tl01kq 240 28 free free JJ cord-010027-r0tl01kq 240 29 DNA dna NN cord-010027-r0tl01kq 240 30 within within IN cord-010027-r0tl01kq 240 31 the the DT cord-010027-r0tl01kq 240 32 plasma plasma NN cord-010027-r0tl01kq 240 33 . . . cord-010027-r0tl01kq 241 1 The the DT cord-010027-r0tl01kq 241 2 advent advent NN cord-010027-r0tl01kq 241 3 of of IN cord-010027-r0tl01kq 241 4 next next JJ cord-010027-r0tl01kq 241 5 generation generation NN cord-010027-r0tl01kq 241 6 sequencing sequencing NN cord-010027-r0tl01kq 241 7 has have VBZ cord-010027-r0tl01kq 241 8 ushered usher VBN cord-010027-r0tl01kq 241 9 in in RP cord-010027-r0tl01kq 241 10 an an DT cord-010027-r0tl01kq 241 11 era era NN cord-010027-r0tl01kq 241 12 of of IN cord-010027-r0tl01kq 241 13 tremendous tremendous JJ cord-010027-r0tl01kq 241 14 potential potential NN cord-010027-r0tl01kq 241 15 for for IN cord-010027-r0tl01kq 241 16 identifying identify VBG cord-010027-r0tl01kq 241 17 the the DT cord-010027-r0tl01kq 241 18 molecular molecular JJ cord-010027-r0tl01kq 241 19 causation causation NN cord-010027-r0tl01kq 241 20 of of IN cord-010027-r0tl01kq 241 21 simple simple JJ cord-010027-r0tl01kq 241 22 and and CC cord-010027-r0tl01kq 241 23 complex complex JJ cord-010027-r0tl01kq 241 24 disorders disorder NNS cord-010027-r0tl01kq 241 25 , , , cord-010027-r0tl01kq 241 26 both both CC cord-010027-r0tl01kq 241 27 rare rare JJ cord-010027-r0tl01kq 241 28 and and CC cord-010027-r0tl01kq 241 29 common common JJ cord-010027-r0tl01kq 241 30 . . . cord-010027-r0tl01kq 242 1 The the DT cord-010027-r0tl01kq 242 2 successes success NNS cord-010027-r0tl01kq 242 3 of of IN cord-010027-r0tl01kq 242 4 next next JJ cord-010027-r0tl01kq 242 5 generation generation NN cord-010027-r0tl01kq 242 6 sequencing sequencing NN cord-010027-r0tl01kq 242 7 reflect reflect VBP cord-010027-r0tl01kq 242 8 the the DT cord-010027-r0tl01kq 242 9 combined combine VBN cord-010027-r0tl01kq 242 10 interpretive interpretive JJ cord-010027-r0tl01kq 242 11 skills skill NNS cord-010027-r0tl01kq 242 12 of of IN cord-010027-r0tl01kq 242 13 geneticists geneticist NNS cord-010027-r0tl01kq 242 14 , , , cord-010027-r0tl01kq 242 15 bioinformaticians bioinformatician NNS cord-010027-r0tl01kq 242 16 and and CC cord-010027-r0tl01kq 242 17 clinicians clinician NNS cord-010027-r0tl01kq 242 18 working work VBG cord-010027-r0tl01kq 242 19 in in IN cord-010027-r0tl01kq 242 20 close close JJ cord-010027-r0tl01kq 242 21 collaboration collaboration NN cord-010027-r0tl01kq 242 22 . . . cord-010027-r0tl01kq 243 1 In in IN cord-010027-r0tl01kq 243 2 the the DT cord-010027-r0tl01kq 243 3 realm realm NN cord-010027-r0tl01kq 243 4 of of IN cord-010027-r0tl01kq 243 5 muscle muscle NN cord-010027-r0tl01kq 243 6 disease disease NN cord-010027-r0tl01kq 243 7 , , , cord-010027-r0tl01kq 243 8 we -PRON- PRP cord-010027-r0tl01kq 243 9 have have VBP cord-010027-r0tl01kq 243 10 witnessed witness VBN cord-010027-r0tl01kq 243 11 both both PDT cord-010027-r0tl01kq 243 12 the the DT cord-010027-r0tl01kq 243 13 strengths strength NNS cord-010027-r0tl01kq 243 14 and and CC cord-010027-r0tl01kq 243 15 the the DT cord-010027-r0tl01kq 243 16 weaknesses weakness NNS cord-010027-r0tl01kq 243 17 of of IN cord-010027-r0tl01kq 243 18 next next JJ cord-010027-r0tl01kq 243 19 generation generation NN cord-010027-r0tl01kq 243 20 sequencing sequencing NN cord-010027-r0tl01kq 243 21 technologies technology NNS cord-010027-r0tl01kq 243 22 . . . cord-010027-r0tl01kq 244 1 The the DT cord-010027-r0tl01kq 244 2 use use NN cord-010027-r0tl01kq 244 3 of of IN cord-010027-r0tl01kq 244 4 exome exome NN cord-010027-r0tl01kq 244 5 sequencing sequencing NN cord-010027-r0tl01kq 244 6 in in IN cord-010027-r0tl01kq 244 7 patients patient NNS cord-010027-r0tl01kq 244 8 with with IN cord-010027-r0tl01kq 244 9 rare rare JJ cord-010027-r0tl01kq 244 10 muscle muscle NN cord-010027-r0tl01kq 244 11 disease disease NN cord-010027-r0tl01kq 244 12 who who WP cord-010027-r0tl01kq 244 13 have have VBP cord-010027-r0tl01kq 244 14 been be VBN cord-010027-r0tl01kq 244 15 carefully carefully RB cord-010027-r0tl01kq 244 16 phenotyped phenotype VBN cord-010027-r0tl01kq 244 17 has have VBZ cord-010027-r0tl01kq 244 18 proven prove VBN cord-010027-r0tl01kq 244 19 to to TO cord-010027-r0tl01kq 244 20 be be VB cord-010027-r0tl01kq 244 21 a a DT cord-010027-r0tl01kq 244 22 successful successful JJ cord-010027-r0tl01kq 244 23 strategy strategy NN cord-010027-r0tl01kq 244 24 for for IN cord-010027-r0tl01kq 244 25 identifying identify VBG cord-010027-r0tl01kq 244 26 causative causative JJ cord-010027-r0tl01kq 244 27 variants variant NNS cord-010027-r0tl01kq 244 28 in in IN cord-010027-r0tl01kq 244 29 new new JJ cord-010027-r0tl01kq 244 30 genes gene NNS cord-010027-r0tl01kq 244 31 as as RB cord-010027-r0tl01kq 244 32 well well RB cord-010027-r0tl01kq 244 33 as as IN cord-010027-r0tl01kq 244 34 in in IN cord-010027-r0tl01kq 244 35 known know VBN cord-010027-r0tl01kq 244 36 genes gene NNS cord-010027-r0tl01kq 244 37 . . . cord-010027-r0tl01kq 245 1 In in IN cord-010027-r0tl01kq 245 2 fact fact NN cord-010027-r0tl01kq 245 3 , , , cord-010027-r0tl01kq 245 4 exome exome NN cord-010027-r0tl01kq 245 5 sequencing sequencing NN cord-010027-r0tl01kq 245 6 has have VBZ cord-010027-r0tl01kq 245 7 significantly significantly RB cord-010027-r0tl01kq 245 8 expanded expand VBN cord-010027-r0tl01kq 245 9 both both CC cord-010027-r0tl01kq 245 10 the the DT cord-010027-r0tl01kq 245 11 clinical clinical JJ cord-010027-r0tl01kq 245 12 and and CC cord-010027-r0tl01kq 245 13 the the DT cord-010027-r0tl01kq 245 14 histological histological JJ cord-010027-r0tl01kq 245 15 phenotypic phenotypic JJ cord-010027-r0tl01kq 245 16 spectra spectrum NNS cord-010027-r0tl01kq 245 17 of of IN cord-010027-r0tl01kq 245 18 muscle muscle NN cord-010027-r0tl01kq 245 19 conditions condition NNS cord-010027-r0tl01kq 245 20 associated associate VBN cord-010027-r0tl01kq 245 21 with with IN cord-010027-r0tl01kq 245 22 causative causative JJ cord-010027-r0tl01kq 245 23 variants variant NNS cord-010027-r0tl01kq 245 24 in in IN cord-010027-r0tl01kq 245 25 known know VBN cord-010027-r0tl01kq 245 26 genes gene NNS cord-010027-r0tl01kq 245 27 . . . cord-010027-r0tl01kq 246 1 In in IN cord-010027-r0tl01kq 246 2 the the DT cord-010027-r0tl01kq 246 3 absence absence NN cord-010027-r0tl01kq 246 4 of of IN cord-010027-r0tl01kq 246 5 careful careful JJ cord-010027-r0tl01kq 246 6 phenotyping phenotyping NN cord-010027-r0tl01kq 246 7 or or CC cord-010027-r0tl01kq 246 8 large large JJ cord-010027-r0tl01kq 246 9 genetic genetic JJ cord-010027-r0tl01kq 246 10 reference reference NN cord-010027-r0tl01kq 246 11 data data NN cord-010027-r0tl01kq 246 12 sets set NNS cord-010027-r0tl01kq 246 13 for for IN cord-010027-r0tl01kq 246 14 identifying identify VBG cord-010027-r0tl01kq 246 15 variants variant NNS cord-010027-r0tl01kq 246 16 of of IN cord-010027-r0tl01kq 246 17 interest interest NN cord-010027-r0tl01kq 246 18 , , , cord-010027-r0tl01kq 246 19 causative causative JJ cord-010027-r0tl01kq 246 20 variants variant NNS cord-010027-r0tl01kq 246 21 may may MD cord-010027-r0tl01kq 246 22 be be VB cord-010027-r0tl01kq 246 23 missed miss VBN cord-010027-r0tl01kq 246 24 , , , cord-010027-r0tl01kq 246 25 however however RB cord-010027-r0tl01kq 246 26 . . . cord-010027-r0tl01kq 247 1 The the DT cord-010027-r0tl01kq 247 2 use use NN cord-010027-r0tl01kq 247 3 of of IN cord-010027-r0tl01kq 247 4 RNA RNA NNP cord-010027-r0tl01kq 247 5 sequencing sequencing NN cord-010027-r0tl01kq 247 6 - - HYPH cord-010027-r0tl01kq 247 7 using use VBG cord-010027-r0tl01kq 247 8 RNA RNA NNP cord-010027-r0tl01kq 247 9 extracted extract VBN cord-010027-r0tl01kq 247 10 from from IN cord-010027-r0tl01kq 247 11 muscle muscle NN cord-010027-r0tl01kq 247 12 biopsy biopsy NN cord-010027-r0tl01kq 247 13 specimens specimen NNS cord-010027-r0tl01kq 247 14 - - , cord-010027-r0tl01kq 247 15 has have VBZ cord-010027-r0tl01kq 247 16 proven prove VBN cord-010027-r0tl01kq 247 17 to to TO cord-010027-r0tl01kq 247 18 be be VB cord-010027-r0tl01kq 247 19 a a DT cord-010027-r0tl01kq 247 20 powerful powerful JJ cord-010027-r0tl01kq 247 21 tool tool NN cord-010027-r0tl01kq 247 22 for for IN cord-010027-r0tl01kq 247 23 finding find VBG cord-010027-r0tl01kq 247 24 causative causative JJ cord-010027-r0tl01kq 247 25 variants variant NNS cord-010027-r0tl01kq 247 26 affecting affect VBG cord-010027-r0tl01kq 247 27 gene gene NN cord-010027-r0tl01kq 247 28 splicing splicing NN cord-010027-r0tl01kq 247 29 or or CC cord-010027-r0tl01kq 247 30 expression expression NN cord-010027-r0tl01kq 247 31 , , , cord-010027-r0tl01kq 247 32 which which WDT cord-010027-r0tl01kq 247 33 may may MD cord-010027-r0tl01kq 247 34 be be VB cord-010027-r0tl01kq 247 35 missed miss VBN cord-010027-r0tl01kq 247 36 with with IN cord-010027-r0tl01kq 247 37 next next JJ cord-010027-r0tl01kq 247 38 generation generation NN cord-010027-r0tl01kq 247 39 sequencing sequencing NN cord-010027-r0tl01kq 247 40 . . . cord-010027-r0tl01kq 248 1 Muscle muscle NN cord-010027-r0tl01kq 248 2 pathology pathology NN cord-010027-r0tl01kq 248 3 plays play VBZ cord-010027-r0tl01kq 248 4 an an DT cord-010027-r0tl01kq 248 5 essential essential JJ cord-010027-r0tl01kq 248 6 role role NN cord-010027-r0tl01kq 248 7 in in IN cord-010027-r0tl01kq 248 8 complementing complement VBG cord-010027-r0tl01kq 248 9 next next JJ cord-010027-r0tl01kq 248 10 generation generation NN cord-010027-r0tl01kq 248 11 sequencing sequencing NN cord-010027-r0tl01kq 248 12 . . . cord-010027-r0tl01kq 249 1 The the DT cord-010027-r0tl01kq 249 2 deep deep JJ cord-010027-r0tl01kq 249 3 phenotyping phenotyping NN cord-010027-r0tl01kq 249 4 of of IN cord-010027-r0tl01kq 249 5 patients patient NNS cord-010027-r0tl01kq 249 6 with with IN cord-010027-r0tl01kq 249 7 muscle muscle NN cord-010027-r0tl01kq 249 8 disease disease NN cord-010027-r0tl01kq 249 9 relies rely VBZ cord-010027-r0tl01kq 249 10 heavily heavily RB cord-010027-r0tl01kq 249 11 on on IN cord-010027-r0tl01kq 249 12 muscle muscle NN cord-010027-r0tl01kq 249 13 histological histological JJ cord-010027-r0tl01kq 249 14 and and CC cord-010027-r0tl01kq 249 15 immunohistochemical immunohistochemical JJ cord-010027-r0tl01kq 249 16 findings finding NNS cord-010027-r0tl01kq 249 17 in in IN cord-010027-r0tl01kq 249 18 combination combination NN cord-010027-r0tl01kq 249 19 with with IN cord-010027-r0tl01kq 249 20 muscle muscle NN cord-010027-r0tl01kq 249 21 imaging imaging NN cord-010027-r0tl01kq 249 22 , , , cord-010027-r0tl01kq 249 23 clinical clinical JJ cord-010027-r0tl01kq 249 24 history history NN cord-010027-r0tl01kq 249 25 and and CC cord-010027-r0tl01kq 249 26 neuromuscular neuromuscular JJ cord-010027-r0tl01kq 249 27 examination examination NN cord-010027-r0tl01kq 249 28 findings finding NNS cord-010027-r0tl01kq 249 29 . . . cord-010027-r0tl01kq 250 1 Examples example NNS cord-010027-r0tl01kq 250 2 of of IN cord-010027-r0tl01kq 250 3 how how WRB cord-010027-r0tl01kq 250 4 next next JJ cord-010027-r0tl01kq 250 5 generation generation NN cord-010027-r0tl01kq 250 6 sequencing sequencing NN cord-010027-r0tl01kq 250 7 coupled couple VBN cord-010027-r0tl01kq 250 8 with with IN cord-010027-r0tl01kq 250 9 careful careful JJ cord-010027-r0tl01kq 250 10 clinical clinical JJ cord-010027-r0tl01kq 250 11 and and CC cord-010027-r0tl01kq 250 12 histological histological JJ cord-010027-r0tl01kq 250 13 phenotyping phenotyping NN cord-010027-r0tl01kq 250 14 has have VBZ cord-010027-r0tl01kq 250 15 uncovered uncover VBN cord-010027-r0tl01kq 250 16 causative causative JJ cord-010027-r0tl01kq 250 17 variants variant NNS cord-010027-r0tl01kq 250 18 in in IN cord-010027-r0tl01kq 250 19 new new JJ cord-010027-r0tl01kq 250 20 genes gene NNS cord-010027-r0tl01kq 250 21 as as RB cord-010027-r0tl01kq 250 22 well well RB cord-010027-r0tl01kq 250 23 as as IN cord-010027-r0tl01kq 250 24 in in IN cord-010027-r0tl01kq 250 25 known know VBN cord-010027-r0tl01kq 250 26 genes gene NNS cord-010027-r0tl01kq 250 27 will will MD cord-010027-r0tl01kq 250 28 be be VB cord-010027-r0tl01kq 250 29 discussed discuss VBN cord-010027-r0tl01kq 250 30 in in IN cord-010027-r0tl01kq 250 31 this this DT cord-010027-r0tl01kq 250 32 talk talk NN cord-010027-r0tl01kq 250 33 . . . cord-010027-r0tl01kq 251 1 Medicine medicine NN cord-010027-r0tl01kq 251 2 , , , cord-010027-r0tl01kq 251 3 diagnostic diagnostic JJ cord-010027-r0tl01kq 251 4 pathology pathology NN cord-010027-r0tl01kq 251 5 , , , cord-010027-r0tl01kq 251 6 technology technology NN cord-010027-r0tl01kq 251 7 , , , cord-010027-r0tl01kq 251 8 and and CC cord-010027-r0tl01kq 251 9 diagnostic diagnostic JJ cord-010027-r0tl01kq 251 10 tests test NNS cord-010027-r0tl01kq 251 11 are be VBP cord-010027-r0tl01kq 251 12 evolving evolve VBG cord-010027-r0tl01kq 251 13 at at IN cord-010027-r0tl01kq 251 14 an an DT cord-010027-r0tl01kq 251 15 extremely extremely RB cord-010027-r0tl01kq 251 16 rapid rapid JJ cord-010027-r0tl01kq 251 17 pace pace NN cord-010027-r0tl01kq 251 18 . . . cord-010027-r0tl01kq 252 1 Drug drug NN cord-010027-r0tl01kq 252 2 developers developer NNS cord-010027-r0tl01kq 252 3 and and CC cord-010027-r0tl01kq 252 4 diagnostic diagnostic JJ cord-010027-r0tl01kq 252 5 developers developer NNS cord-010027-r0tl01kq 252 6 each each DT cord-010027-r0tl01kq 252 7 face face VBP cord-010027-r0tl01kq 252 8 unique unique JJ cord-010027-r0tl01kq 252 9 challenges challenge NNS cord-010027-r0tl01kq 252 10 . . . cord-010027-r0tl01kq 253 1 Companion companion NN cord-010027-r0tl01kq 253 2 diagnostic diagnostic JJ cord-010027-r0tl01kq 253 3 development development NN cord-010027-r0tl01kq 253 4 is be VBZ cord-010027-r0tl01kq 253 5 a a DT cord-010027-r0tl01kq 253 6 key key JJ cord-010027-r0tl01kq 253 7 component component NN cord-010027-r0tl01kq 253 8 of of IN cord-010027-r0tl01kq 253 9 pharma pharma NNP cord-010027-r0tl01kq 253 10 drug drug NNP cord-010027-r0tl01kq 253 11 development development NNP cord-010027-r0tl01kq 253 12 strategy strategy NN cord-010027-r0tl01kq 253 13 . . . cord-010027-r0tl01kq 254 1 We -PRON- PRP cord-010027-r0tl01kq 254 2 will will MD cord-010027-r0tl01kq 254 3 discuss discuss VB cord-010027-r0tl01kq 254 4 the the DT cord-010027-r0tl01kq 254 5 importance importance NN cord-010027-r0tl01kq 254 6 of of IN cord-010027-r0tl01kq 254 7 companion companion NN cord-010027-r0tl01kq 254 8 diagnostics diagnostic NNS cord-010027-r0tl01kq 254 9 in in IN cord-010027-r0tl01kq 254 10 the the DT cord-010027-r0tl01kq 254 11 success success NN cord-010027-r0tl01kq 254 12 of of IN cord-010027-r0tl01kq 254 13 personalized personalized JJ cord-010027-r0tl01kq 254 14 medicine medicine NN cord-010027-r0tl01kq 254 15 , , , cord-010027-r0tl01kq 254 16 the the DT cord-010027-r0tl01kq 254 17 FDA FDA NNP cord-010027-r0tl01kq 254 18 position position NN cord-010027-r0tl01kq 254 19 on on IN cord-010027-r0tl01kq 254 20 companion companion NN cord-010027-r0tl01kq 254 21 diagnostics diagnostic NNS cord-010027-r0tl01kq 254 22 , , , cord-010027-r0tl01kq 254 23 and and CC cord-010027-r0tl01kq 254 24 the the DT cord-010027-r0tl01kq 254 25 role role NN cord-010027-r0tl01kq 254 26 , , , cord-010027-r0tl01kq 254 27 advantages advantage NNS cord-010027-r0tl01kq 254 28 and and CC cord-010027-r0tl01kq 254 29 disadvantages disadvantage NNS cord-010027-r0tl01kq 254 30 of of IN cord-010027-r0tl01kq 254 31 tissue tissue NN cord-010027-r0tl01kq 254 32 based base VBN cord-010027-r0tl01kq 254 33 companion companion NN cord-010027-r0tl01kq 254 34 diagnostics diagnostic NNS cord-010027-r0tl01kq 254 35 . . . cord-010027-r0tl01kq 255 1 Other other JJ cord-010027-r0tl01kq 255 2 technologies technology NNS cord-010027-r0tl01kq 255 3 , , , cord-010027-r0tl01kq 255 4 such such JJ cord-010027-r0tl01kq 255 5 as as IN cord-010027-r0tl01kq 255 6 Next Next NNP cord-010027-r0tl01kq 255 7 Gen Gen NNP cord-010027-r0tl01kq 255 8 Sequencing Sequencing NNP cord-010027-r0tl01kq 255 9 , , , cord-010027-r0tl01kq 255 10 will will MD cord-010027-r0tl01kq 255 11 increasingly increasingly RB cord-010027-r0tl01kq 255 12 be be VB cord-010027-r0tl01kq 255 13 utilized utilize VBN cord-010027-r0tl01kq 255 14 in in IN cord-010027-r0tl01kq 255 15 a a DT cord-010027-r0tl01kq 255 16 complementary complementary JJ cord-010027-r0tl01kq 255 17 fashion fashion NN cord-010027-r0tl01kq 255 18 along along IN cord-010027-r0tl01kq 255 19 with with IN cord-010027-r0tl01kq 255 20 traditional traditional JJ cord-010027-r0tl01kq 255 21 slide slide NN cord-010027-r0tl01kq 255 22 based base VBN cord-010027-r0tl01kq 255 23 immunohistochemical immunohistochemical JJ cord-010027-r0tl01kq 255 24 and and CC cord-010027-r0tl01kq 255 25 in in IN cord-010027-r0tl01kq 255 26 situ situ JJ cord-010027-r0tl01kq 255 27 hybridization hybridization NN cord-010027-r0tl01kq 255 28 . . . cord-010027-r0tl01kq 256 1 The the DT cord-010027-r0tl01kq 256 2 scope scope NN cord-010027-r0tl01kq 256 3 and and CC cord-010027-r0tl01kq 256 4 limitations limitation NNS cord-010027-r0tl01kq 256 5 of of IN cord-010027-r0tl01kq 256 6 available available JJ cord-010027-r0tl01kq 256 7 technologies technology NNS cord-010027-r0tl01kq 256 8 will will MD cord-010027-r0tl01kq 256 9 be be VB cord-010027-r0tl01kq 256 10 reviewed review VBN cord-010027-r0tl01kq 256 11 . . . cord-010027-r0tl01kq 257 1 Diagnostic diagnostic JJ cord-010027-r0tl01kq 257 2 technologies technology NNS cord-010027-r0tl01kq 257 3 of of IN cord-010027-r0tl01kq 257 4 all all DT cord-010027-r0tl01kq 257 5 types type NNS cord-010027-r0tl01kq 257 6 will will MD cord-010027-r0tl01kq 257 7 complement complement VB cord-010027-r0tl01kq 257 8 each each DT cord-010027-r0tl01kq 257 9 other other JJ cord-010027-r0tl01kq 257 10 to to TO cord-010027-r0tl01kq 257 11 provide provide VB cord-010027-r0tl01kq 257 12 the the DT cord-010027-r0tl01kq 257 13 most most RBS cord-010027-r0tl01kq 257 14 accurate accurate JJ cord-010027-r0tl01kq 257 15 diagnostic diagnostic JJ cord-010027-r0tl01kq 257 16 information information NN cord-010027-r0tl01kq 257 17 for for IN cord-010027-r0tl01kq 257 18 clinicians clinician NNS cord-010027-r0tl01kq 257 19 and and CC cord-010027-r0tl01kq 257 20 patients patient NNS cord-010027-r0tl01kq 257 21 . . . cord-010027-r0tl01kq 258 1 Following follow VBG cord-010027-r0tl01kq 258 2 the the DT cord-010027-r0tl01kq 258 3 2008 2008 CD cord-010027-r0tl01kq 258 4 WHO who WP cord-010027-r0tl01kq 258 5 classification classification NN cord-010027-r0tl01kq 258 6 of of IN cord-010027-r0tl01kq 258 7 haematological haematological JJ cord-010027-r0tl01kq 258 8 malignancies malignancy NNS cord-010027-r0tl01kq 258 9 there there EX cord-010027-r0tl01kq 258 10 has have VBZ cord-010027-r0tl01kq 258 11 been be VBN cord-010027-r0tl01kq 258 12 a a DT cord-010027-r0tl01kq 258 13 greater great JJR cord-010027-r0tl01kq 258 14 emphasis emphasis NN cord-010027-r0tl01kq 258 15 on on IN cord-010027-r0tl01kq 258 16 the the DT cord-010027-r0tl01kq 258 17 integration integration NN cord-010027-r0tl01kq 258 18 of of IN cord-010027-r0tl01kq 258 19 molecular molecular JJ cord-010027-r0tl01kq 258 20 information information NN cord-010027-r0tl01kq 258 21 with with IN cord-010027-r0tl01kq 258 22 clinical clinical JJ cord-010027-r0tl01kq 258 23 and and CC cord-010027-r0tl01kq 258 24 morphological morphological JJ cord-010027-r0tl01kq 258 25 data datum NNS cord-010027-r0tl01kq 258 26 not not RB cord-010027-r0tl01kq 258 27 just just RB cord-010027-r0tl01kq 258 28 for for IN cord-010027-r0tl01kq 258 29 diagnostic diagnostic JJ cord-010027-r0tl01kq 258 30 purposes purpose NNS cord-010027-r0tl01kq 258 31 but but CC cord-010027-r0tl01kq 258 32 also also RB cord-010027-r0tl01kq 258 33 to to TO cord-010027-r0tl01kq 258 34 help help VB cord-010027-r0tl01kq 258 35 convey convey VB cord-010027-r0tl01kq 258 36 both both DT cord-010027-r0tl01kq 258 37 prognostic prognostic JJ cord-010027-r0tl01kq 258 38 and and CC cord-010027-r0tl01kq 258 39 therapeutic therapeutic JJ cord-010027-r0tl01kq 258 40 information information NN cord-010027-r0tl01kq 258 41 . . . cord-010027-r0tl01kq 259 1 This this DT cord-010027-r0tl01kq 259 2 talk talk NN cord-010027-r0tl01kq 259 3 will will MD cord-010027-r0tl01kq 259 4 concentrate concentrate VB cord-010027-r0tl01kq 259 5 on on IN cord-010027-r0tl01kq 259 6 routine routine JJ cord-010027-r0tl01kq 259 7 testing testing NN cord-010027-r0tl01kq 259 8 in in IN cord-010027-r0tl01kq 259 9 the the DT cord-010027-r0tl01kq 259 10 work work NN cord-010027-r0tl01kq 259 11 - - HYPH cord-010027-r0tl01kq 259 12 up up NN cord-010027-r0tl01kq 259 13 of of IN cord-010027-r0tl01kq 259 14 common common JJ cord-010027-r0tl01kq 259 15 haematological haematological JJ cord-010027-r0tl01kq 259 16 malignancies malignancy NNS cord-010027-r0tl01kq 259 17 focusing focus VBG cord-010027-r0tl01kq 259 18 specifically specifically RB cord-010027-r0tl01kq 259 19 on on IN cord-010027-r0tl01kq 259 20 clonality clonality NN cord-010027-r0tl01kq 259 21 and and CC cord-010027-r0tl01kq 259 22 translocation translocation NN cord-010027-r0tl01kq 259 23 analysis analysis NN cord-010027-r0tl01kq 259 24 in in IN cord-010027-r0tl01kq 259 25 lymphoproliferations lymphoproliferation NNS cord-010027-r0tl01kq 259 26 and and CC cord-010027-r0tl01kq 259 27 mutational mutational JJ cord-010027-r0tl01kq 259 28 testing testing NN cord-010027-r0tl01kq 259 29 in in IN cord-010027-r0tl01kq 259 30 BCR BCR NNP cord-010027-r0tl01kq 259 31 - - HYPH cord-010027-r0tl01kq 259 32 ABL ABL NNP cord-010027-r0tl01kq 259 33 negative negative JJ cord-010027-r0tl01kq 259 34 myeloproliferative myeloproliferative JJ cord-010027-r0tl01kq 259 35 neoplasms neoplasm NNS cord-010027-r0tl01kq 259 36 . . . cord-010027-r0tl01kq 260 1 Using use VBG cord-010027-r0tl01kq 260 2 case case NN cord-010027-r0tl01kq 260 3 studies study NNS cord-010027-r0tl01kq 260 4 to to TO cord-010027-r0tl01kq 260 5 illustrate illustrate VB cord-010027-r0tl01kq 260 6 common common JJ cord-010027-r0tl01kq 260 7 indications indication NNS cord-010027-r0tl01kq 260 8 for for IN cord-010027-r0tl01kq 260 9 testing test VBG cord-010027-r0tl01kq 260 10 this this DT cord-010027-r0tl01kq 260 11 talk talk NN cord-010027-r0tl01kq 260 12 will will MD cord-010027-r0tl01kq 260 13 also also RB cord-010027-r0tl01kq 260 14 highlight highlight VB cord-010027-r0tl01kq 260 15 some some DT cord-010027-r0tl01kq 260 16 of of IN cord-010027-r0tl01kq 260 17 the the DT cord-010027-r0tl01kq 260 18 practical practical JJ cord-010027-r0tl01kq 260 19 points point NNS cord-010027-r0tl01kq 260 20 and and CC cord-010027-r0tl01kq 260 21 pitfalls pitfall NNS cord-010027-r0tl01kq 260 22 in in IN cord-010027-r0tl01kq 260 23 the the DT cord-010027-r0tl01kq 260 24 interpretation interpretation NN cord-010027-r0tl01kq 260 25 of of IN cord-010027-r0tl01kq 260 26 these these DT cord-010027-r0tl01kq 260 27 tests test NNS cord-010027-r0tl01kq 260 28 . . . cord-010027-r0tl01kq 261 1 Beaumont Beaumont NNP cord-010027-r0tl01kq 261 2 Hospital Hospital NNP cord-010027-r0tl01kq 261 3 , , , cord-010027-r0tl01kq 261 4 Dublin Dublin NNP cord-010027-r0tl01kq 261 5 , , , cord-010027-r0tl01kq 261 6 Ireland Ireland NNP cord-010027-r0tl01kq 261 7 " " '' cord-010027-r0tl01kq 262 1 Should Should MD cord-010027-r0tl01kq 262 2 I -PRON- PRP cord-010027-r0tl01kq 262 3 keep keep VB cord-010027-r0tl01kq 262 4 the the DT cord-010027-r0tl01kq 262 5 brain brain NN cord-010027-r0tl01kq 262 6 ? ? . cord-010027-r0tl01kq 263 1 " " `` cord-010027-r0tl01kq 263 2 is be VBZ cord-010027-r0tl01kq 263 3 one one CD cord-010027-r0tl01kq 263 4 of of IN cord-010027-r0tl01kq 263 5 the the DT cord-010027-r0tl01kq 263 6 most most RBS cord-010027-r0tl01kq 263 7 frequent frequent JJ cord-010027-r0tl01kq 263 8 questions question NNS cord-010027-r0tl01kq 263 9 addressed address VBN cord-010027-r0tl01kq 263 10 to to IN cord-010027-r0tl01kq 263 11 neuropathologists neuropathologist NNS cord-010027-r0tl01kq 263 12 by by IN cord-010027-r0tl01kq 263 13 surgical surgical JJ cord-010027-r0tl01kq 263 14 pathology pathology NN cord-010027-r0tl01kq 263 15 colleagues colleague NNS cord-010027-r0tl01kq 263 16 . . . cord-010027-r0tl01kq 264 1 Fears fear NNS cord-010027-r0tl01kq 264 2 relating relate VBG cord-010027-r0tl01kq 264 3 to to IN cord-010027-r0tl01kq 264 4 inappropriate inappropriate JJ cord-010027-r0tl01kq 264 5 organ organ NN cord-010027-r0tl01kq 264 6 retention retention NN cord-010027-r0tl01kq 264 7 coupled couple VBN cord-010027-r0tl01kq 264 8 with with IN cord-010027-r0tl01kq 264 9 decreasing decrease VBG cord-010027-r0tl01kq 264 10 availability availability NN cord-010027-r0tl01kq 264 11 of of IN cord-010027-r0tl01kq 264 12 expert expert JJ cord-010027-r0tl01kq 264 13 neuropathology neuropathology NN cord-010027-r0tl01kq 264 14 opinion opinion NN cord-010027-r0tl01kq 264 15 and and CC cord-010027-r0tl01kq 264 16 the the DT cord-010027-r0tl01kq 264 17 widely widely RB cord-010027-r0tl01kq 264 18 held held JJ cord-010027-r0tl01kq 264 19 belief belief NN cord-010027-r0tl01kq 264 20 that that IN cord-010027-r0tl01kq 264 21 advances advance VBZ cord-010027-r0tl01kq 264 22 in in IN cord-010027-r0tl01kq 264 23 neuroimaging neuroimaging NN cord-010027-r0tl01kq 264 24 have have VBP cord-010027-r0tl01kq 264 25 replaced replace VBN cord-010027-r0tl01kq 264 26 the the DT cord-010027-r0tl01kq 264 27 brain brain NN cord-010027-r0tl01kq 264 28 autopsy autopsy NN cord-010027-r0tl01kq 264 29 , , , cord-010027-r0tl01kq 264 30 have have VBP cord-010027-r0tl01kq 264 31 all all DT cord-010027-r0tl01kq 264 32 contributed contribute VBN cord-010027-r0tl01kq 264 33 to to IN cord-010027-r0tl01kq 264 34 a a DT cord-010027-r0tl01kq 264 35 decline decline NN cord-010027-r0tl01kq 264 36 in in IN cord-010027-r0tl01kq 264 37 the the DT cord-010027-r0tl01kq 264 38 post post AFX cord-010027-r0tl01kq 264 39 mortem mortem NN cord-010027-r0tl01kq 264 40 study study NN cord-010027-r0tl01kq 264 41 of of IN cord-010027-r0tl01kq 264 42 human human JJ cord-010027-r0tl01kq 264 43 brain brain NN cord-010027-r0tl01kq 264 44 tissue tissue NN cord-010027-r0tl01kq 264 45 . . . cord-010027-r0tl01kq 265 1 Leaving leave VBG cord-010027-r0tl01kq 265 2 aside aside RB cord-010027-r0tl01kq 265 3 the the DT cord-010027-r0tl01kq 265 4 critical critical JJ cord-010027-r0tl01kq 265 5 relevance relevance NN cord-010027-r0tl01kq 265 6 of of IN cord-010027-r0tl01kq 265 7 neuropathology neuropathology NN cord-010027-r0tl01kq 265 8 to to IN cord-010027-r0tl01kq 265 9 forensic forensic JJ cord-010027-r0tl01kq 265 10 medicine medicine NN cord-010027-r0tl01kq 265 11 , , , cord-010027-r0tl01kq 265 12 the the DT cord-010027-r0tl01kq 265 13 vital vital JJ cord-010027-r0tl01kq 265 14 role role NN cord-010027-r0tl01kq 265 15 played play VBN cord-010027-r0tl01kq 265 16 by by IN cord-010027-r0tl01kq 265 17 careful careful JJ cord-010027-r0tl01kq 265 18 examination examination NN cord-010027-r0tl01kq 265 19 of of IN cord-010027-r0tl01kq 265 20 the the DT cord-010027-r0tl01kq 265 21 post post FW cord-010027-r0tl01kq 265 22 mortem mortem NN cord-010027-r0tl01kq 265 23 brain brain NN cord-010027-r0tl01kq 265 24 extends extend VBZ cord-010027-r0tl01kq 265 25 far far RB cord-010027-r0tl01kq 265 26 beyond beyond IN cord-010027-r0tl01kq 265 27 pathology pathology NN cord-010027-r0tl01kq 265 28 and and CC cord-010027-r0tl01kq 265 29 has have VBZ cord-010027-r0tl01kq 265 30 contributed contribute VBN cord-010027-r0tl01kq 265 31 greatly greatly RB cord-010027-r0tl01kq 265 32 to to IN cord-010027-r0tl01kq 265 33 science science NN cord-010027-r0tl01kq 265 34 and and CC cord-010027-r0tl01kq 265 35 medicine medicine NN cord-010027-r0tl01kq 265 36 . . . cord-010027-r0tl01kq 266 1 In in IN cord-010027-r0tl01kq 266 2 general general JJ cord-010027-r0tl01kq 266 3 , , , cord-010027-r0tl01kq 266 4 prolonged prolonged JJ cord-010027-r0tl01kq 266 5 retention retention NN cord-010027-r0tl01kq 266 6 of of IN cord-010027-r0tl01kq 266 7 entire entire JJ cord-010027-r0tl01kq 266 8 brains brain NNS cord-010027-r0tl01kq 266 9 may may MD cord-010027-r0tl01kq 266 10 be be VB cord-010027-r0tl01kq 266 11 avoided avoid VBN cord-010027-r0tl01kq 266 12 . . . cord-010027-r0tl01kq 267 1 In in IN cord-010027-r0tl01kq 267 2 hospital hospital NN cord-010027-r0tl01kq 267 3 practice practice NN cord-010027-r0tl01kq 267 4 it -PRON- PRP cord-010027-r0tl01kq 267 5 is be VBZ cord-010027-r0tl01kq 267 6 uncommon uncommon JJ cord-010027-r0tl01kq 267 7 for for IN cord-010027-r0tl01kq 267 8 a a DT cord-010027-r0tl01kq 267 9 patient patient NN cord-010027-r0tl01kq 267 10 to to TO cord-010027-r0tl01kq 267 11 die die VB cord-010027-r0tl01kq 267 12 without without IN cord-010027-r0tl01kq 267 13 brain brain NN cord-010027-r0tl01kq 267 14 imaging imaging NN cord-010027-r0tl01kq 267 15 . . . cord-010027-r0tl01kq 268 1 Access access NN cord-010027-r0tl01kq 268 2 to to IN cord-010027-r0tl01kq 268 3 pre pre JJ cord-010027-r0tl01kq 268 4 - - JJ cord-010027-r0tl01kq 268 5 mortem mortem JJ cord-010027-r0tl01kq 268 6 brain brain NN cord-010027-r0tl01kq 268 7 imaging imaging NN cord-010027-r0tl01kq 268 8 will will MD cord-010027-r0tl01kq 268 9 guide guide VB cord-010027-r0tl01kq 268 10 the the DT cord-010027-r0tl01kq 268 11 surgical surgical JJ cord-010027-r0tl01kq 268 12 pathologist pathologist NN cord-010027-r0tl01kq 268 13 in in IN cord-010027-r0tl01kq 268 14 careful careful JJ cord-010027-r0tl01kq 268 15 and and CC cord-010027-r0tl01kq 268 16 appropriate appropriate JJ cord-010027-r0tl01kq 268 17 sampling sampling NN cord-010027-r0tl01kq 268 18 of of IN cord-010027-r0tl01kq 268 19 calvarial calvarial NN cord-010027-r0tl01kq 268 20 , , , cord-010027-r0tl01kq 268 21 dural dural NN cord-010027-r0tl01kq 268 22 , , , cord-010027-r0tl01kq 268 23 meningeal meningeal JJ cord-010027-r0tl01kq 268 24 , , , cord-010027-r0tl01kq 268 25 vascular vascular JJ cord-010027-r0tl01kq 268 26 and and CC cord-010027-r0tl01kq 268 27 parenchymal parenchymal JJ cord-010027-r0tl01kq 268 28 central central JJ cord-010027-r0tl01kq 268 29 nervous nervous JJ cord-010027-r0tl01kq 268 30 system system NN cord-010027-r0tl01kq 268 31 components component NNS cord-010027-r0tl01kq 268 32 . . . cord-010027-r0tl01kq 269 1 Spinal spinal JJ cord-010027-r0tl01kq 269 2 cord cord NN cord-010027-r0tl01kq 269 3 examination examination NN cord-010027-r0tl01kq 269 4 requires require VBZ cord-010027-r0tl01kq 269 5 prior prior JJ cord-010027-r0tl01kq 269 6 experience experience NN cord-010027-r0tl01kq 269 7 in in IN cord-010027-r0tl01kq 269 8 spinal spinal JJ cord-010027-r0tl01kq 269 9 cord cord NN cord-010027-r0tl01kq 269 10 removal removal NN cord-010027-r0tl01kq 269 11 but but CC cord-010027-r0tl01kq 269 12 most most JJS cord-010027-r0tl01kq 269 13 post post NN cord-010027-r0tl01kq 269 14 mortem mortem NN cord-010027-r0tl01kq 269 15 technologists technologist NNS cord-010027-r0tl01kq 269 16 are be VBP cord-010027-r0tl01kq 269 17 expert expert JJ cord-010027-r0tl01kq 269 18 in in IN cord-010027-r0tl01kq 269 19 cord cord NN cord-010027-r0tl01kq 269 20 extraction extraction NN cord-010027-r0tl01kq 269 21 . . . cord-010027-r0tl01kq 270 1 Sampling sampling NN cord-010027-r0tl01kq 270 2 and and CC cord-010027-r0tl01kq 270 3 appropriate appropriate JJ cord-010027-r0tl01kq 270 4 processing processing NN cord-010027-r0tl01kq 270 5 of of IN cord-010027-r0tl01kq 270 6 nerve nerve NN cord-010027-r0tl01kq 270 7 and and CC cord-010027-r0tl01kq 270 8 muscle muscle NN cord-010027-r0tl01kq 270 9 requires require VBZ cord-010027-r0tl01kq 270 10 prior prior JJ cord-010027-r0tl01kq 270 11 experience experience NN cord-010027-r0tl01kq 270 12 or or CC cord-010027-r0tl01kq 270 13 neuropathology neuropathology NN cord-010027-r0tl01kq 270 14 advice advice NN cord-010027-r0tl01kq 270 15 . . . cord-010027-r0tl01kq 271 1 High high JJ cord-010027-r0tl01kq 271 2 quality quality NN cord-010027-r0tl01kq 271 3 photography photography NN cord-010027-r0tl01kq 271 4 obtained obtain VBN cord-010027-r0tl01kq 271 5 at at IN cord-010027-r0tl01kq 271 6 all all DT cord-010027-r0tl01kq 271 7 phases phase NNS cord-010027-r0tl01kq 271 8 of of IN cord-010027-r0tl01kq 271 9 post post FW cord-010027-r0tl01kq 271 10 mortem mortem NN cord-010027-r0tl01kq 271 11 brain brain NN cord-010027-r0tl01kq 271 12 examination examination NN cord-010027-r0tl01kq 271 13 including include VBG cord-010027-r0tl01kq 271 14 the the DT cord-010027-r0tl01kq 271 15 coronally coronally RB cord-010027-r0tl01kq 271 16 sectioned section VBN cord-010027-r0tl01kq 271 17 individual individual JJ cord-010027-r0tl01kq 271 18 cerebral cerebral JJ cord-010027-r0tl01kq 271 19 hemispheres hemisphere NNS cord-010027-r0tl01kq 271 20 , , , cord-010027-r0tl01kq 271 21 with with IN cord-010027-r0tl01kq 271 22 retention retention NN cord-010027-r0tl01kq 271 23 of of IN cord-010027-r0tl01kq 271 24 blocks block NNS cord-010027-r0tl01kq 271 25 from from IN cord-010027-r0tl01kq 271 26 each each DT cord-010027-r0tl01kq 271 27 of of IN cord-010027-r0tl01kq 271 28 the the DT cord-010027-r0tl01kq 271 29 brain brain NN cord-010027-r0tl01kq 271 30 lobes lob VBZ cord-010027-r0tl01kq 271 31 together together RB cord-010027-r0tl01kq 271 32 with with IN cord-010027-r0tl01kq 271 33 cerebellum cerebellum NN cord-010027-r0tl01kq 271 34 , , , cord-010027-r0tl01kq 271 35 brain brain NN cord-010027-r0tl01kq 271 36 stem stem NN cord-010027-r0tl01kq 271 37 , , , cord-010027-r0tl01kq 271 38 vessels vessel NNS cord-010027-r0tl01kq 271 39 and and CC cord-010027-r0tl01kq 271 40 dura dura NN cord-010027-r0tl01kq 271 41 -meninges -meninge NNS cord-010027-r0tl01kq 271 42 will will MD cord-010027-r0tl01kq 271 43 ensure ensure VB cord-010027-r0tl01kq 271 44 that that IN cord-010027-r0tl01kq 271 45 in in IN cord-010027-r0tl01kq 271 46 the the DT cord-010027-r0tl01kq 271 47 event event NN cord-010027-r0tl01kq 271 48 of of IN cord-010027-r0tl01kq 271 49 a a DT cord-010027-r0tl01kq 271 50 neuropathology neuropathology NN cord-010027-r0tl01kq 271 51 opinion opinion NN cord-010027-r0tl01kq 271 52 benign benign JJ cord-010027-r0tl01kq 271 53 required require VBN cord-010027-r0tl01kq 271 54 -that -that NN cord-010027-r0tl01kq 271 55 opinion opinion NN cord-010027-r0tl01kq 271 56 will will MD cord-010027-r0tl01kq 271 57 not not RB cord-010027-r0tl01kq 271 58 be be VB cord-010027-r0tl01kq 271 59 compromised compromise VBN cord-010027-r0tl01kq 271 60 . . . cord-010027-r0tl01kq 272 1 Specific specific JJ cord-010027-r0tl01kq 272 2 issues issue NNS cord-010027-r0tl01kq 272 3 which which WDT cord-010027-r0tl01kq 272 4 will will MD cord-010027-r0tl01kq 272 5 be be VB cord-010027-r0tl01kq 272 6 addressed address VBN cord-010027-r0tl01kq 272 7 will will MD cord-010027-r0tl01kq 272 8 include include VB cord-010027-r0tl01kq 272 9 the the DT cord-010027-r0tl01kq 272 10 death death NN cord-010027-r0tl01kq 272 11 of of IN cord-010027-r0tl01kq 272 12 patients patient NNS cord-010027-r0tl01kq 272 13 with with IN cord-010027-r0tl01kq 272 14 epilepsy epilepsy NN cord-010027-r0tl01kq 272 15 , , , cord-010027-r0tl01kq 272 16 dementia dementia NN cord-010027-r0tl01kq 272 17 , , , cord-010027-r0tl01kq 272 18 stroke stroke NN cord-010027-r0tl01kq 272 19 and and CC cord-010027-r0tl01kq 272 20 undiagnosed undiagnosed JJ cord-010027-r0tl01kq 272 21 neurological neurological JJ cord-010027-r0tl01kq 272 22 disease disease NN cord-010027-r0tl01kq 272 23 . . . cord-010027-r0tl01kq 273 1 The the DT cord-010027-r0tl01kq 273 2 key key JJ cord-010027-r0tl01kq 273 3 learning learn VBG cord-010027-r0tl01kq 273 4 objective objective NN cord-010027-r0tl01kq 273 5 will will MD cord-010027-r0tl01kq 273 6 be be VB cord-010027-r0tl01kq 273 7 to to TO cord-010027-r0tl01kq 273 8 ensure ensure VB cord-010027-r0tl01kq 273 9 that that IN cord-010027-r0tl01kq 273 10 pathology pathology NN cord-010027-r0tl01kq 273 11 trainees trainee NNS cord-010027-r0tl01kq 273 12 approach approach VBP cord-010027-r0tl01kq 273 13 post post AFX cord-010027-r0tl01kq 273 14 mortem mortem NN cord-010027-r0tl01kq 273 15 examination examination NN cord-010027-r0tl01kq 273 16 of of IN cord-010027-r0tl01kq 273 17 the the DT cord-010027-r0tl01kq 273 18 nervous nervous JJ cord-010027-r0tl01kq 273 19 system system NN cord-010027-r0tl01kq 273 20 with with IN cord-010027-r0tl01kq 273 21 interest interest NN cord-010027-r0tl01kq 273 22 and and CC cord-010027-r0tl01kq 273 23 excitement excitement NN cord-010027-r0tl01kq 273 24 . . . cord-010027-r0tl01kq 274 1 Following follow VBG cord-010027-r0tl01kq 274 2 several several JJ cord-010027-r0tl01kq 274 3 high high JJ cord-010027-r0tl01kq 274 4 profile profile NN cord-010027-r0tl01kq 274 5 misdiagnoses misdiagnose NNS cord-010027-r0tl01kq 274 6 in in IN cord-010027-r0tl01kq 274 7 Ireland Ireland NNP cord-010027-r0tl01kq 274 8 a a DT cord-010027-r0tl01kq 274 9 national national JJ cord-010027-r0tl01kq 274 10 quality quality NN cord-010027-r0tl01kq 274 11 assurance assurance NN cord-010027-r0tl01kq 274 12 ( ( -LRB- cord-010027-r0tl01kq 274 13 QA QA NNP cord-010027-r0tl01kq 274 14 ) ) -RRB- cord-010027-r0tl01kq 274 15 programme programme NN cord-010027-r0tl01kq 274 16 for for IN cord-010027-r0tl01kq 274 17 cellular cellular JJ cord-010027-r0tl01kq 274 18 pathology pathology NN cord-010027-r0tl01kq 274 19 in in IN cord-010027-r0tl01kq 274 20 2009 2009 CD cord-010027-r0tl01kq 274 21 was be VBD cord-010027-r0tl01kq 274 22 initiated initiate VBN cord-010027-r0tl01kq 274 23 with with IN cord-010027-r0tl01kq 274 24 a a DT cord-010027-r0tl01kq 274 25 vision vision NN cord-010027-r0tl01kq 274 26 of of IN cord-010027-r0tl01kq 274 27 establishing establish VBG cord-010027-r0tl01kq 274 28 a a DT cord-010027-r0tl01kq 274 29 patientcentred patientcentre VBN cord-010027-r0tl01kq 274 30 pathologist pathologist NN cord-010027-r0tl01kq 274 31 - - HYPH cord-010027-r0tl01kq 274 32 led lead VBN cord-010027-r0tl01kq 274 33 framework framework NN cord-010027-r0tl01kq 274 34 that that WDT cord-010027-r0tl01kq 274 35 would would MD cord-010027-r0tl01kq 274 36 enhance enhance VB cord-010027-r0tl01kq 274 37 the the DT cord-010027-r0tl01kq 274 38 quality quality NN cord-010027-r0tl01kq 274 39 of of IN cord-010027-r0tl01kq 274 40 patient patient JJ cord-010027-r0tl01kq 274 41 care care NN cord-010027-r0tl01kq 274 42 with with IN cord-010027-r0tl01kq 274 43 timely timely JJ cord-010027-r0tl01kq 274 44 , , , cord-010027-r0tl01kq 274 45 accurate accurate JJ cord-010027-r0tl01kq 274 46 and and CC cord-010027-r0tl01kq 274 47 complete complete JJ cord-010027-r0tl01kq 274 48 pathological pathological JJ cord-010027-r0tl01kq 274 49 diagnoses diagnosis NNS cord-010027-r0tl01kq 274 50 and and CC cord-010027-r0tl01kq 274 51 reporting reporting NN cord-010027-r0tl01kq 274 52 . . . cord-010027-r0tl01kq 275 1 National National NNP cord-010027-r0tl01kq 275 2 QA QA NNP cord-010027-r0tl01kq 275 3 guidelines guideline NNS cord-010027-r0tl01kq 275 4 were be VBD cord-010027-r0tl01kq 275 5 developed develop VBN cord-010027-r0tl01kq 275 6 based base VBN cord-010027-r0tl01kq 275 7 on on IN cord-010027-r0tl01kq 275 8 17 17 CD cord-010027-r0tl01kq 275 9 key key JJ cord-010027-r0tl01kq 275 10 quality quality NN cord-010027-r0tl01kq 275 11 activities activity NNS cord-010027-r0tl01kq 275 12 generating generate VBG cord-010027-r0tl01kq 275 13 a a DT cord-010027-r0tl01kq 275 14 total total NN cord-010027-r0tl01kq 275 15 of of IN cord-010027-r0tl01kq 275 16 51 51 CD cord-010027-r0tl01kq 275 17 Key Key NNP cord-010027-r0tl01kq 275 18 Quality Quality NNP cord-010027-r0tl01kq 275 19 Indicators Indicators NNP cord-010027-r0tl01kq 275 20 ( ( -LRB- cord-010027-r0tl01kq 275 21 KQI KQI NNP cord-010027-r0tl01kq 275 22 ) ) -RRB- cord-010027-r0tl01kq 275 23 . . . cord-010027-r0tl01kq 276 1 Examples example NNS cord-010027-r0tl01kq 276 2 of of IN cord-010027-r0tl01kq 276 3 the the DT cord-010027-r0tl01kq 276 4 quality quality NN cord-010027-r0tl01kq 276 5 activities activity NNS cord-010027-r0tl01kq 276 6 include include VBP cord-010027-r0tl01kq 276 7 turnaround turnaround NN cord-010027-r0tl01kq 276 8 time time NN cord-010027-r0tl01kq 276 9 , , , cord-010027-r0tl01kq 276 10 monitoring monitoring NN cord-010027-r0tl01kq 276 11 of of IN cord-010027-r0tl01kq 276 12 amended amend VBN cord-010027-r0tl01kq 276 13 reports report NNS cord-010027-r0tl01kq 276 14 , , , cord-010027-r0tl01kq 276 15 frozen frozen JJ cord-010027-r0tl01kq 276 16 section section NN cord-010027-r0tl01kq 276 17 correlation correlation NN cord-010027-r0tl01kq 276 18 and and CC cord-010027-r0tl01kq 276 19 various various JJ cord-010027-r0tl01kq 276 20 elements element NNS cord-010027-r0tl01kq 276 21 of of IN cord-010027-r0tl01kq 276 22 peer peer NN cord-010027-r0tl01kq 276 23 review review NN cord-010027-r0tl01kq 276 24 . . . cord-010027-r0tl01kq 277 1 All all DT cord-010027-r0tl01kq 277 2 25 25 CD cord-010027-r0tl01kq 277 3 cellular cellular JJ cord-010027-r0tl01kq 277 4 pathology pathology NN cord-010027-r0tl01kq 277 5 departments department NNS cord-010027-r0tl01kq 277 6 in in IN cord-010027-r0tl01kq 277 7 the the DT cord-010027-r0tl01kq 277 8 public public JJ cord-010027-r0tl01kq 277 9 state state NN cord-010027-r0tl01kq 277 10 - - HYPH cord-010027-r0tl01kq 277 11 funded fund VBN cord-010027-r0tl01kq 277 12 hospitals hospital NNS cord-010027-r0tl01kq 277 13 participate participate VBP cord-010027-r0tl01kq 277 14 in in IN cord-010027-r0tl01kq 277 15 the the DT cord-010027-r0tl01kq 277 16 programme programme NN cord-010027-r0tl01kq 277 17 in in IN cord-010027-r0tl01kq 277 18 addition addition NN cord-010027-r0tl01kq 277 19 to to IN cord-010027-r0tl01kq 277 20 7 7 CD cord-010027-r0tl01kq 277 21 laboratories laboratory NNS cord-010027-r0tl01kq 277 22 within within IN cord-010027-r0tl01kq 277 23 privately privately RB cord-010027-r0tl01kq 277 24 - - HYPH cord-010027-r0tl01kq 277 25 run run VBN cord-010027-r0tl01kq 277 26 hospitals hospital NNS cord-010027-r0tl01kq 277 27 . . . cord-010027-r0tl01kq 278 1 Each each DT cord-010027-r0tl01kq 278 2 laboratory laboratory NN cord-010027-r0tl01kq 278 3 enters enter VBZ cord-010027-r0tl01kq 278 4 codes code NNS cord-010027-r0tl01kq 278 5 on on IN cord-010027-r0tl01kq 278 6 individual individual JJ cord-010027-r0tl01kq 278 7 cases case NNS cord-010027-r0tl01kq 278 8 designed design VBN cord-010027-r0tl01kq 278 9 to to TO cord-010027-r0tl01kq 278 10 capture capture VB cord-010027-r0tl01kq 278 11 the the DT cord-010027-r0tl01kq 278 12 relevant relevant JJ cord-010027-r0tl01kq 278 13 KQI KQI NNP cord-010027-r0tl01kq 278 14 and and CC cord-010027-r0tl01kq 278 15 the the DT cord-010027-r0tl01kq 278 16 anonymised anonymised JJ cord-010027-r0tl01kq 278 17 encrypted encrypt VBN cord-010027-r0tl01kq 278 18 QA QA NNP cord-010027-r0tl01kq 278 19 data data NN cord-010027-r0tl01kq 278 20 is be VBZ cord-010027-r0tl01kq 278 21 then then RB cord-010027-r0tl01kq 278 22 electronically electronically RB cord-010027-r0tl01kq 278 23 extracted extract VBN cord-010027-r0tl01kq 278 24 from from IN cord-010027-r0tl01kq 278 25 the the DT cord-010027-r0tl01kq 278 26 laboratory laboratory NN cord-010027-r0tl01kq 278 27 information information NN cord-010027-r0tl01kq 278 28 system system NN cord-010027-r0tl01kq 278 29 to to IN cord-010027-r0tl01kq 278 30 a a DT cord-010027-r0tl01kq 278 31 national national JJ cord-010027-r0tl01kq 278 32 database database NN cord-010027-r0tl01kq 278 33 . . . cord-010027-r0tl01kq 279 1 This this DT cord-010027-r0tl01kq 279 2 national national JJ cord-010027-r0tl01kq 279 3 central central JJ cord-010027-r0tl01kq 279 4 database database NN cord-010027-r0tl01kq 279 5 is be VBZ cord-010027-r0tl01kq 279 6 managed manage VBN cord-010027-r0tl01kq 279 7 by by IN cord-010027-r0tl01kq 279 8 a a DT cord-010027-r0tl01kq 279 9 novel novel JJ cord-010027-r0tl01kq 279 10 information information NN cord-010027-r0tl01kq 279 11 technology technology NN cord-010027-r0tl01kq 279 12 system system NN cord-010027-r0tl01kq 279 13 , , , cord-010027-r0tl01kq 279 14 the the DT cord-010027-r0tl01kq 279 15 National National NNP cord-010027-r0tl01kq 279 16 Quality Quality NNP cord-010027-r0tl01kq 279 17 Assurance Assurance NNP cord-010027-r0tl01kq 279 18 Intelligence Intelligence NNP cord-010027-r0tl01kq 279 19 System System NNP cord-010027-r0tl01kq 279 20 ( ( -LRB- cord-010027-r0tl01kq 279 21 NQAIS)-Histopathology NQAIS)-Histopathology NNP cord-010027-r0tl01kq 279 22 , , , cord-010027-r0tl01kq 279 23 that that WDT cord-010027-r0tl01kq 279 24 was be VBD cord-010027-r0tl01kq 279 25 designed design VBN cord-010027-r0tl01kq 279 26 to to TO cord-010027-r0tl01kq 279 27 process process VB cord-010027-r0tl01kq 279 28 and and CC cord-010027-r0tl01kq 279 29 display display VB cord-010027-r0tl01kq 279 30 the the DT cord-010027-r0tl01kq 279 31 QA QA NNP cord-010027-r0tl01kq 279 32 data datum NNS cord-010027-r0tl01kq 279 33 so so IN cord-010027-r0tl01kq 279 34 that that IN cord-010027-r0tl01kq 279 35 each each DT cord-010027-r0tl01kq 279 36 individual individual JJ cord-010027-r0tl01kq 279 37 laboratory laboratory NN cord-010027-r0tl01kq 279 38 can can MD cord-010027-r0tl01kq 279 39 analyse analyse VB cord-010027-r0tl01kq 279 40 their -PRON- PRP$ cord-010027-r0tl01kq 279 41 own own JJ cord-010027-r0tl01kq 279 42 data datum NNS cord-010027-r0tl01kq 279 43 and and CC cord-010027-r0tl01kq 279 44 also also RB cord-010027-r0tl01kq 279 45 compare compare VBP cord-010027-r0tl01kq 279 46 their -PRON- PRP$ cord-010027-r0tl01kq 279 47 performance performance NN cord-010027-r0tl01kq 279 48 to to IN cord-010027-r0tl01kq 279 49 the the DT cord-010027-r0tl01kq 279 50 national national JJ cord-010027-r0tl01kq 279 51 average average NN cord-010027-r0tl01kq 279 52 for for IN cord-010027-r0tl01kq 279 53 each each DT cord-010027-r0tl01kq 279 54 KQI KQI NNP cord-010027-r0tl01kq 279 55 . . . cord-010027-r0tl01kq 280 1 Since since IN cord-010027-r0tl01kq 280 2 2013 2013 CD cord-010027-r0tl01kq 280 3 complete complete JJ cord-010027-r0tl01kq 280 4 national national JJ cord-010027-r0tl01kq 280 5 data datum NNS cord-010027-r0tl01kq 280 6 has have VBZ cord-010027-r0tl01kq 280 7 been be VBN cord-010027-r0tl01kq 280 8 inputted inputte VBN cord-010027-r0tl01kq 280 9 into into IN cord-010027-r0tl01kq 280 10 the the DT cord-010027-r0tl01kq 280 11 NQAIS NQAIS NNP cord-010027-r0tl01kq 280 12 system system NN cord-010027-r0tl01kq 280 13 and and CC cord-010027-r0tl01kq 280 14 in in IN cord-010027-r0tl01kq 280 15 2014 2014 CD cord-010027-r0tl01kq 280 16 initial initial JJ cord-010027-r0tl01kq 280 17 QA QA NNP cord-010027-r0tl01kq 280 18 targets target NNS cord-010027-r0tl01kq 280 19 were be VBD cord-010027-r0tl01kq 280 20 agreed agree VBN cord-010027-r0tl01kq 280 21 for for IN cord-010027-r0tl01kq 280 22 turnaround turnaround NN cord-010027-r0tl01kq 280 23 time time NN cord-010027-r0tl01kq 280 24 , , , cord-010027-r0tl01kq 280 25 frozen frozen JJ cord-010027-r0tl01kq 280 26 section section NN cord-010027-r0tl01kq 280 27 correlation correlation NN cord-010027-r0tl01kq 280 28 and and CC cord-010027-r0tl01kq 280 29 rate rate NN cord-010027-r0tl01kq 280 30 of of IN cord-010027-r0tl01kq 280 31 intra intra JJ cord-010027-r0tl01kq 280 32 - - JJ cord-010027-r0tl01kq 280 33 departmental departmental JJ cord-010027-r0tl01kq 280 34 consultation consultation NN cord-010027-r0tl01kq 280 35 ( ( -LRB- cord-010027-r0tl01kq 280 36 IDC IDC NNP cord-010027-r0tl01kq 280 37 ) ) -RRB- cord-010027-r0tl01kq 280 38 . . . cord-010027-r0tl01kq 281 1 In in IN cord-010027-r0tl01kq 281 2 2015 2015 CD cord-010027-r0tl01kq 281 3 additional additional JJ cord-010027-r0tl01kq 281 4 targets target NNS cord-010027-r0tl01kq 281 5 for for IN cord-010027-r0tl01kq 281 6 autopsy autopsy JJ cord-010027-r0tl01kq 281 7 ICD ICD NNP cord-010027-r0tl01kq 281 8 , , , cord-010027-r0tl01kq 281 9 frozen frozen JJ cord-010027-r0tl01kq 281 10 section section NN cord-010027-r0tl01kq 281 11 deferral deferral NN cord-010027-r0tl01kq 281 12 rate rate NN cord-010027-r0tl01kq 281 13 and and CC cord-010027-r0tl01kq 281 14 turnaround turnaround NN cord-010027-r0tl01kq 281 15 time time NN cord-010027-r0tl01kq 281 16 have have VBP cord-010027-r0tl01kq 281 17 been be VBN cord-010027-r0tl01kq 281 18 added add VBN cord-010027-r0tl01kq 281 19 . . . cord-010027-r0tl01kq 282 1 To to IN cord-010027-r0tl01kq 282 2 our -PRON- PRP$ cord-010027-r0tl01kq 282 3 knowledge knowledge NN cord-010027-r0tl01kq 282 4 this this DT cord-010027-r0tl01kq 282 5 programme programme NN cord-010027-r0tl01kq 282 6 has have VBZ cord-010027-r0tl01kq 282 7 enabled enable VBN cord-010027-r0tl01kq 282 8 Ireland Ireland NNP cord-010027-r0tl01kq 282 9 to to TO cord-010027-r0tl01kq 282 10 be be VB cord-010027-r0tl01kq 282 11 the the DT cord-010027-r0tl01kq 282 12 first first JJ cord-010027-r0tl01kq 282 13 country country NN cord-010027-r0tl01kq 282 14 to to TO cord-010027-r0tl01kq 282 15 publically publically RB cord-010027-r0tl01kq 282 16 report report VB cord-010027-r0tl01kq 282 17 national national JJ cord-010027-r0tl01kq 282 18 metrics metric NNS cord-010027-r0tl01kq 282 19 on on IN cord-010027-r0tl01kq 282 20 the the DT cord-010027-r0tl01kq 282 21 quality quality NN cord-010027-r0tl01kq 282 22 of of IN cord-010027-r0tl01kq 282 23 their -PRON- PRP$ cord-010027-r0tl01kq 282 24 pathology pathology NN cord-010027-r0tl01kq 282 25 services service NNS cord-010027-r0tl01kq 282 26 . . . cord-010027-r0tl01kq 283 1   . cord-010027-r0tl01kq 284 1 The the DT cord-010027-r0tl01kq 284 2 Politics Politics NNPS cord-010027-r0tl01kq 284 3 of of IN cord-010027-r0tl01kq 284 4 EQA EQA NNP cord-010027-r0tl01kq 284 5 : : : cord-010027-r0tl01kq 285 1 The the DT cord-010027-r0tl01kq 285 2 NHS NHS NNP cord-010027-r0tl01kq 285 3 England England NNP cord-010027-r0tl01kq 285 4 QA QA NNP cord-010027-r0tl01kq 285 5 Review Review NNP cord-010027-r0tl01kq 285 6 and and CC cord-010027-r0tl01kq 285 7 its -PRON- PRP$ cord-010027-r0tl01kq 285 8 Consequences consequence NNS cord-010027-r0tl01kq 285 9 P P NNP cord-010027-r0tl01kq 285 10 DE DE NNP cord-010027-r0tl01kq 285 11 Hughes Hughes NNP cord-010027-r0tl01kq 286 1 In in IN cord-010027-r0tl01kq 286 2 2013 2013 CD cord-010027-r0tl01kq 286 3 , , , cord-010027-r0tl01kq 286 4 a a DT cord-010027-r0tl01kq 286 5 review review NN cord-010027-r0tl01kq 286 6 of of IN cord-010027-r0tl01kq 286 7 External External NNP cord-010027-r0tl01kq 286 8 Quality Quality NNP cord-010027-r0tl01kq 286 9 Assessment Assessment NNP cord-010027-r0tl01kq 286 10 processes process NNS cord-010027-r0tl01kq 286 11 was be VBD cord-010027-r0tl01kq 286 12 carried carry VBN cord-010027-r0tl01kq 286 13 out out RP cord-010027-r0tl01kq 286 14 on on IN cord-010027-r0tl01kq 286 15 behalf behalf NN cord-010027-r0tl01kq 286 16 of of IN cord-010027-r0tl01kq 286 17 NHS NHS NNP cord-010027-r0tl01kq 286 18 England England NNP cord-010027-r0tl01kq 286 19 . . . cord-010027-r0tl01kq 287 1 The the DT cord-010027-r0tl01kq 287 2 main main JJ cord-010027-r0tl01kq 287 3 recommendations recommendation NNS cord-010027-r0tl01kq 287 4 of of IN cord-010027-r0tl01kq 287 5 this this DT cord-010027-r0tl01kq 287 6 review review NN cord-010027-r0tl01kq 287 7 related relate VBN cord-010027-r0tl01kq 287 8 to to IN cord-010027-r0tl01kq 287 9 the the DT cord-010027-r0tl01kq 287 10 strengthening strengthening NN cord-010027-r0tl01kq 287 11 of of IN cord-010027-r0tl01kq 287 12 governance governance NN cord-010027-r0tl01kq 287 13 of of IN cord-010027-r0tl01kq 287 14 EQA EQA NNP cord-010027-r0tl01kq 287 15 , , , cord-010027-r0tl01kq 287 16 both both CC cord-010027-r0tl01kq 287 17 nationally nationally RB cord-010027-r0tl01kq 287 18 and and CC cord-010027-r0tl01kq 287 19 within within IN cord-010027-r0tl01kq 287 20 pathology pathology NN cord-010027-r0tl01kq 287 21 provider provider NN cord-010027-r0tl01kq 287 22 organisations organisation NNS cord-010027-r0tl01kq 287 23 . . . cord-010027-r0tl01kq 288 1 Recommendations recommendation NNS cord-010027-r0tl01kq 288 2 specifically specifically RB cord-010027-r0tl01kq 288 3 affecting affect VBG cord-010027-r0tl01kq 288 4 Cellular Cellular NNP cord-010027-r0tl01kq 288 5 Pathology Pathology NNP cord-010027-r0tl01kq 288 6 were be VBD cord-010027-r0tl01kq 288 7 : : : cord-010027-r0tl01kq 288 8 ( ( -LRB- cord-010027-r0tl01kq 288 9 i i NN cord-010027-r0tl01kq 288 10 ) ) -RRB- cord-010027-r0tl01kq 288 11 Professional professional JJ cord-010027-r0tl01kq 288 12 bodies body NNS cord-010027-r0tl01kq 288 13 , , , cord-010027-r0tl01kq 288 14 led lead VBN cord-010027-r0tl01kq 288 15 by by IN cord-010027-r0tl01kq 288 16 RCPath RCPath NNP cord-010027-r0tl01kq 288 17 , , , cord-010027-r0tl01kq 288 18 should should MD cord-010027-r0tl01kq 288 19 develop develop VB cord-010027-r0tl01kq 288 20 methodologies methodology NNS cord-010027-r0tl01kq 288 21 for for IN cord-010027-r0tl01kq 288 22 assessing assess VBG cord-010027-r0tl01kq 288 23 the the DT cord-010027-r0tl01kq 288 24 performance performance NN cord-010027-r0tl01kq 288 25 of of IN cord-010027-r0tl01kq 288 26 individuals individual NNS cord-010027-r0tl01kq 288 27 in in IN cord-010027-r0tl01kq 288 28 EQA EQA NNP cord-010027-r0tl01kq 288 29 schemes scheme NNS cord-010027-r0tl01kq 288 30 . . . cord-010027-r0tl01kq 289 1 ( ( -LRB- cord-010027-r0tl01kq 289 2 ii ii NN cord-010027-r0tl01kq 289 3 ) ) -RRB- cord-010027-r0tl01kq 290 1 All all DT cord-010027-r0tl01kq 290 2 pathologists pathologist NNS cord-010027-r0tl01kq 290 3 reporting report VBG cord-010027-r0tl01kq 290 4 pathology pathology NN cord-010027-r0tl01kq 290 5 results result NNS cord-010027-r0tl01kq 290 6 and and CC cord-010027-r0tl01kq 290 7 providing provide VBG cord-010027-r0tl01kq 290 8 clinical clinical JJ cord-010027-r0tl01kq 290 9 advice advice NN cord-010027-r0tl01kq 290 10 should should MD cord-010027-r0tl01kq 290 11 be be VB cord-010027-r0tl01kq 290 12 participate participate VB cord-010027-r0tl01kq 290 13 in in IN cord-010027-r0tl01kq 290 14 EQA EQA NNP cord-010027-r0tl01kq 290 15 schemes scheme NNS cord-010027-r0tl01kq 290 16 relevant relevant JJ cord-010027-r0tl01kq 290 17 to to IN cord-010027-r0tl01kq 290 18 their -PRON- PRP$ cord-010027-r0tl01kq 290 19 practice practice NN cord-010027-r0tl01kq 290 20 , , , cord-010027-r0tl01kq 290 21 should should MD cord-010027-r0tl01kq 290 22 achieve achieve VB cord-010027-r0tl01kq 290 23 levels level NNS cord-010027-r0tl01kq 290 24 of of IN cord-010027-r0tl01kq 290 25 performance performance NN cord-010027-r0tl01kq 290 26 determined determine VBN cord-010027-r0tl01kq 290 27 by by IN cord-010027-r0tl01kq 290 28 the the DT cord-010027-r0tl01kq 290 29 professional professional JJ cord-010027-r0tl01kq 290 30 bodies body NNS cord-010027-r0tl01kq 290 31 and and CC cord-010027-r0tl01kq 290 32 this this DT cord-010027-r0tl01kq 290 33 performance performance NN cord-010027-r0tl01kq 290 34 should should MD cord-010027-r0tl01kq 290 35 be be VB cord-010027-r0tl01kq 290 36 noted note VBN cord-010027-r0tl01kq 290 37 at at IN cord-010027-r0tl01kq 290 38 annual annual JJ cord-010027-r0tl01kq 290 39 appraisal appraisal NN cord-010027-r0tl01kq 290 40 . . . cord-010027-r0tl01kq 291 1 ( ( -LRB- cord-010027-r0tl01kq 291 2 iii iii NN cord-010027-r0tl01kq 291 3 ) ) -RRB- cord-010027-r0tl01kq 292 1 Where where WRB cord-010027-r0tl01kq 292 2 a a DT cord-010027-r0tl01kq 292 3 need need NN cord-010027-r0tl01kq 292 4 to to TO cord-010027-r0tl01kq 292 5 improve improve VB cord-010027-r0tl01kq 292 6 performance performance NN cord-010027-r0tl01kq 292 7 is be VBZ cord-010027-r0tl01kq 292 8 identified identify VBN cord-010027-r0tl01kq 292 9 , , , cord-010027-r0tl01kq 292 10 additional additional JJ cord-010027-r0tl01kq 292 11 remedial remedial JJ cord-010027-r0tl01kq 292 12 training training NN cord-010027-r0tl01kq 292 13 should should MD cord-010027-r0tl01kq 292 14 be be VB cord-010027-r0tl01kq 292 15 carried carry VBN cord-010027-r0tl01kq 292 16 out out RP cord-010027-r0tl01kq 292 17 , , , cord-010027-r0tl01kq 292 18 or or CC cord-010027-r0tl01kq 292 19 practice practice VB cord-010027-r0tl01kq 292 20 in in IN cord-010027-r0tl01kq 292 21 the the DT cord-010027-r0tl01kq 292 22 area area NN cord-010027-r0tl01kq 292 23 of of IN cord-010027-r0tl01kq 292 24 concern concern NN cord-010027-r0tl01kq 292 25 should should MD cord-010027-r0tl01kq 292 26 be be VB cord-010027-r0tl01kq 292 27 stopped stop VBN cord-010027-r0tl01kq 292 28 until until IN cord-010027-r0tl01kq 292 29 appropriate appropriate JJ cord-010027-r0tl01kq 292 30 retraining retraining NN cord-010027-r0tl01kq 292 31 has have VBZ cord-010027-r0tl01kq 292 32 been be VBN cord-010027-r0tl01kq 292 33 undertaken undertake VBN cord-010027-r0tl01kq 292 34 and and CC cord-010027-r0tl01kq 292 35 revalidation revalidation NN cord-010027-r0tl01kq 292 36 achieved achieve VBN cord-010027-r0tl01kq 292 37 . . . cord-010027-r0tl01kq 293 1 This this DT cord-010027-r0tl01kq 293 2 process process NN cord-010027-r0tl01kq 293 3 should should MD cord-010027-r0tl01kq 293 4 supported support VBN cord-010027-r0tl01kq 293 5 and and CC cord-010027-r0tl01kq 293 6 resourced resource VBN cord-010027-r0tl01kq 293 7 by by IN cord-010027-r0tl01kq 293 8 the the DT cord-010027-r0tl01kq 293 9 employing employ VBG cord-010027-r0tl01kq 293 10 organisation organisation NN cord-010027-r0tl01kq 293 11 , , , cord-010027-r0tl01kq 293 12 as as IN cord-010027-r0tl01kq 293 13 should should MD cord-010027-r0tl01kq 293 14 EQA eqa VB cord-010027-r0tl01kq 293 15 scheme scheme NN cord-010027-r0tl01kq 293 16 participation participation NN cord-010027-r0tl01kq 293 17 . . . cord-010027-r0tl01kq 294 1 ( ( -LRB- cord-010027-r0tl01kq 294 2 iv iv LS cord-010027-r0tl01kq 294 3 ) ) -RRB- cord-010027-r0tl01kq 294 4 Interpretative interpretative JJ cord-010027-r0tl01kq 294 5 EQA EQA NNP cord-010027-r0tl01kq 294 6 schemes scheme NNS cord-010027-r0tl01kq 294 7 are be VBP cord-010027-r0tl01kq 294 8 designed design VBN cord-010027-r0tl01kq 294 9 to to TO cord-010027-r0tl01kq 294 10 assess assess VB cord-010027-r0tl01kq 294 11 and and CC cord-010027-r0tl01kq 294 12 improve improve VB cord-010027-r0tl01kq 294 13 individual individual JJ cord-010027-r0tl01kq 294 14 performance performance NN cord-010027-r0tl01kq 294 15 , , , cord-010027-r0tl01kq 294 16 and and CC cord-010027-r0tl01kq 294 17 attempts attempt VBZ cord-010027-r0tl01kq 294 18 at at IN cord-010027-r0tl01kq 294 19 collusion collusion NN cord-010027-r0tl01kq 294 20 are be VBP cord-010027-r0tl01kq 294 21 considered consider VBN cord-010027-r0tl01kq 294 22 matters matter NNS cord-010027-r0tl01kq 294 23 of of IN cord-010027-r0tl01kq 294 24 professional professional JJ cord-010027-r0tl01kq 294 25 probity probity NN cord-010027-r0tl01kq 294 26 . . . cord-010027-r0tl01kq 295 1 The the DT cord-010027-r0tl01kq 295 2 professional professional JJ cord-010027-r0tl01kq 295 3 response response NN cord-010027-r0tl01kq 295 4 to to IN cord-010027-r0tl01kq 295 5 these these DT cord-010027-r0tl01kq 295 6 recommendations recommendation NNS cord-010027-r0tl01kq 295 7 is be VBZ cord-010027-r0tl01kq 295 8 expected expect VBN cord-010027-r0tl01kq 295 9 to to TO cord-010027-r0tl01kq 295 10 be be VB cord-010027-r0tl01kq 295 11 led lead VBN cord-010027-r0tl01kq 295 12 by by IN cord-010027-r0tl01kq 295 13 the the DT cord-010027-r0tl01kq 295 14 RCPath RCPath NNP cord-010027-r0tl01kq 295 15 under under IN cord-010027-r0tl01kq 295 16 the the DT cord-010027-r0tl01kq 295 17 guidance guidance NN cord-010027-r0tl01kq 295 18 of of IN cord-010027-r0tl01kq 295 19 a a DT cord-010027-r0tl01kq 295 20 newly newly RB cord-010027-r0tl01kq 295 21 - - HYPH cord-010027-r0tl01kq 295 22 established establish VBN cord-010027-r0tl01kq 295 23 national national JJ cord-010027-r0tl01kq 295 24 oversight oversight NN cord-010027-r0tl01kq 295 25 group group NN cord-010027-r0tl01kq 295 26 working work VBG cord-010027-r0tl01kq 295 27 on on IN cord-010027-r0tl01kq 295 28 behalf behalf NN cord-010027-r0tl01kq 295 29 of of IN cord-010027-r0tl01kq 295 30 NHS NHS NNP cord-010027-r0tl01kq 295 31 England England NNP cord-010027-r0tl01kq 295 32 and and CC cord-010027-r0tl01kq 295 33 should should MD cord-010027-r0tl01kq 295 34 be be VB cord-010027-r0tl01kq 295 35 more more RBR cord-010027-r0tl01kq 295 36 clear clear JJ cord-010027-r0tl01kq 295 37 at at IN cord-010027-r0tl01kq 295 38 the the DT cord-010027-r0tl01kq 295 39 time time NN cord-010027-r0tl01kq 295 40 of of IN cord-010027-r0tl01kq 295 41 the the DT cord-010027-r0tl01kq 295 42 Pathsoc Pathsoc NNP cord-010027-r0tl01kq 295 43 conference conference NN cord-010027-r0tl01kq 295 44 . . . cord-010027-r0tl01kq 296 1 A a DT cord-010027-r0tl01kq 296 2 key key JJ cord-010027-r0tl01kq 296 3 part part NN cord-010027-r0tl01kq 296 4 of of IN cord-010027-r0tl01kq 296 5 this this DT cord-010027-r0tl01kq 296 6 response response NN cord-010027-r0tl01kq 296 7 will will MD cord-010027-r0tl01kq 296 8 be be VB cord-010027-r0tl01kq 296 9 to to TO cord-010027-r0tl01kq 296 10 separately separately RB cord-010027-r0tl01kq 296 11 consider consider VB cord-010027-r0tl01kq 296 12 the the DT cord-010027-r0tl01kq 296 13 implications implication NNS cord-010027-r0tl01kq 296 14 of of IN cord-010027-r0tl01kq 296 15 this this DT cord-010027-r0tl01kq 296 16 review review NN cord-010027-r0tl01kq 296 17 for for IN cord-010027-r0tl01kq 296 18 technical technical JJ cord-010027-r0tl01kq 296 19 schemes scheme NNS cord-010027-r0tl01kq 296 20 , , , cord-010027-r0tl01kq 296 21 affecting affect VBG cord-010027-r0tl01kq 296 22 laboratories laboratory NNS cord-010027-r0tl01kq 296 23 , , , cord-010027-r0tl01kq 296 24 and and CC cord-010027-r0tl01kq 296 25 interpretative interpretative JJ cord-010027-r0tl01kq 296 26 schemes scheme NNS cord-010027-r0tl01kq 296 27 , , , cord-010027-r0tl01kq 296 28 affecting affect VBG cord-010027-r0tl01kq 296 29 individual individual JJ cord-010027-r0tl01kq 296 30 practitioners practitioner NNS cord-010027-r0tl01kq 296 31 . . . cord-010027-r0tl01kq 297 1 Roche Roche NNP cord-010027-r0tl01kq 297 2 Tissue Tissue NNP cord-010027-r0tl01kq 297 3 Diagnostics Diagnostics NNP cord-010027-r0tl01kq 297 4 , , , cord-010027-r0tl01kq 297 5 Tucson Tucson NNP cord-010027-r0tl01kq 297 6 , , , cord-010027-r0tl01kq 297 7 Arizona Arizona NNP cord-010027-r0tl01kq 297 8 , , , cord-010027-r0tl01kq 297 9 USA USA NNP cord-010027-r0tl01kq 297 10 Tumour tumour NN cord-010027-r0tl01kq 297 11 samples sample NNS cord-010027-r0tl01kq 297 12 to to TO cord-010027-r0tl01kq 297 13 guide guide VB cord-010027-r0tl01kq 297 14 treatment treatment NN cord-010027-r0tl01kq 297 15 decisions decision NNS cord-010027-r0tl01kq 297 16 have have VBP cord-010027-r0tl01kq 297 17 become become VBN cord-010027-r0tl01kq 297 18 of of IN cord-010027-r0tl01kq 297 19 increasing increase VBG cord-010027-r0tl01kq 297 20 significance significance NN cord-010027-r0tl01kq 297 21 . . . cord-010027-r0tl01kq 298 1 Most most RBS cord-010027-r0tl01kq 298 2 importantly importantly RB cord-010027-r0tl01kq 298 3 the the DT cord-010027-r0tl01kq 298 4 results result NNS cord-010027-r0tl01kq 298 5 of of IN cord-010027-r0tl01kq 298 6 companion companion NN cord-010027-r0tl01kq 298 7 diagnostic diagnostic JJ cord-010027-r0tl01kq 298 8 testing testing NN cord-010027-r0tl01kq 298 9 directly directly RB cord-010027-r0tl01kq 298 10 influences influence VBZ cord-010027-r0tl01kq 298 11 the the DT cord-010027-r0tl01kq 298 12 management management NN cord-010027-r0tl01kq 298 13 of of IN cord-010027-r0tl01kq 298 14 individual individual JJ cord-010027-r0tl01kq 298 15 patients patient NNS cord-010027-r0tl01kq 298 16 as as IN cord-010027-r0tl01kq 298 17 more more JJR cord-010027-r0tl01kq 298 18 drugs drug NNS cord-010027-r0tl01kq 298 19 are be VBP cord-010027-r0tl01kq 298 20 approved approve VBN cord-010027-r0tl01kq 298 21 for for IN cord-010027-r0tl01kq 298 22 treatment treatment NN cord-010027-r0tl01kq 298 23 of of IN cord-010027-r0tl01kq 298 24 specific specific JJ cord-010027-r0tl01kq 298 25 molecular molecular JJ cord-010027-r0tl01kq 298 26 distinct distinct JJ cord-010027-r0tl01kq 298 27 subgroups subgroup NNS cord-010027-r0tl01kq 298 28 . . . cord-010027-r0tl01kq 299 1 Reporting report VBG cord-010027-r0tl01kq 299 2 suboptimal suboptimal JJ cord-010027-r0tl01kq 299 3 quality quality NN cord-010027-r0tl01kq 299 4 test test NN cord-010027-r0tl01kq 299 5 results result NNS cord-010027-r0tl01kq 299 6 may may MD cord-010027-r0tl01kq 299 7 be be VB cord-010027-r0tl01kq 299 8 harmful harmful JJ cord-010027-r0tl01kq 299 9 to to IN cord-010027-r0tl01kq 299 10 the the DT cord-010027-r0tl01kq 299 11 patient patient NN cord-010027-r0tl01kq 299 12 and and CC cord-010027-r0tl01kq 299 13 cause cause VB cord-010027-r0tl01kq 299 14 the the DT cord-010027-r0tl01kq 299 15 mismanagement mismanagement NN cord-010027-r0tl01kq 299 16 of of IN cord-010027-r0tl01kq 299 17 a a DT cord-010027-r0tl01kq 299 18 prescribed prescribed JJ cord-010027-r0tl01kq 299 19 companion companion NN cord-010027-r0tl01kq 299 20 drug drug NN cord-010027-r0tl01kq 299 21 . . . cord-010027-r0tl01kq 300 1 The the DT cord-010027-r0tl01kq 300 2 consequences consequence NNS cord-010027-r0tl01kq 300 3 of of IN cord-010027-r0tl01kq 300 4 unsatisfactory unsatisfactory JJ cord-010027-r0tl01kq 300 5 performance performance NN cord-010027-r0tl01kq 300 6 and and CC cord-010027-r0tl01kq 300 7 measures measure NNS cord-010027-r0tl01kq 300 8 for for IN cord-010027-r0tl01kq 300 9 improvement improvement NN cord-010027-r0tl01kq 300 10 are be VBP cord-010027-r0tl01kq 300 11 the the DT cord-010027-r0tl01kq 300 12 responsibility responsibility NN cord-010027-r0tl01kq 300 13 of of IN cord-010027-r0tl01kq 300 14 the the DT cord-010027-r0tl01kq 300 15 laboratory laboratory NN cord-010027-r0tl01kq 300 16 . . . cord-010027-r0tl01kq 301 1 Presently presently RB cord-010027-r0tl01kq 301 2 , , , cord-010027-r0tl01kq 301 3 there there EX cord-010027-r0tl01kq 301 4 are be VBP cord-010027-r0tl01kq 301 5 number number NN cord-010027-r0tl01kq 301 6 of of IN cord-010027-r0tl01kq 301 7 EQA EQA NNP cord-010027-r0tl01kq 301 8 schemes scheme NNS cord-010027-r0tl01kq 301 9 for for IN cord-010027-r0tl01kq 301 10 molecular molecular JJ cord-010027-r0tl01kq 301 11 testing testing NN cord-010027-r0tl01kq 301 12 available available JJ cord-010027-r0tl01kq 301 13 in in IN cord-010027-r0tl01kq 301 14 Europe Europe NNP cord-010027-r0tl01kq 301 15 however however RB cord-010027-r0tl01kq 301 16 , , , cord-010027-r0tl01kq 301 17 their -PRON- PRP$ cord-010027-r0tl01kq 301 18 results result NNS cord-010027-r0tl01kq 301 19 clearly clearly RB cord-010027-r0tl01kq 301 20 indicate indicate VBP cord-010027-r0tl01kq 301 21 the the DT cord-010027-r0tl01kq 301 22 need need NN cord-010027-r0tl01kq 301 23 for for IN cord-010027-r0tl01kq 301 24 EQA eqa NN cord-010027-r0tl01kq 301 25 since since IN cord-010027-r0tl01kq 301 26 10%-15 10%-15 CD cord-010027-r0tl01kq 301 27 % % NN cord-010027-r0tl01kq 301 28 of of IN cord-010027-r0tl01kq 301 29 laboratories laboratory NNS cord-010027-r0tl01kq 301 30 do do VBP cord-010027-r0tl01kq 301 31 not not RB cord-010027-r0tl01kq 301 32 carry carry VB cord-010027-r0tl01kq 301 33 out out RP cord-010027-r0tl01kq 301 34 according accord VBG cord-010027-r0tl01kq 301 35 to to IN cord-010027-r0tl01kq 301 36 the the DT cord-010027-r0tl01kq 301 37 standard standard JJ cord-010027-r0tl01kq 301 38 set set VBN cord-010027-r0tl01kq 301 39 by by IN cord-010027-r0tl01kq 301 40 the the DT cord-010027-r0tl01kq 301 41 EQA EQA NNP cord-010027-r0tl01kq 301 42 provider provider NN cord-010027-r0tl01kq 301 43 or or CC cord-010027-r0tl01kq 301 44 utilize utilize VB cord-010027-r0tl01kq 301 45 standardized standardized JJ cord-010027-r0tl01kq 301 46 procedures procedure NNS cord-010027-r0tl01kq 301 47 . . . cord-010027-r0tl01kq 302 1 Continual continual JJ cord-010027-r0tl01kq 302 2 improvement improvement NN cord-010027-r0tl01kq 302 3 programs program NNS cord-010027-r0tl01kq 302 4 , , , cord-010027-r0tl01kq 302 5 internal internal JJ cord-010027-r0tl01kq 302 6 quality quality NN cord-010027-r0tl01kq 302 7 control control NN cord-010027-r0tl01kq 302 8 and and CC cord-010027-r0tl01kq 302 9 validation validation NN cord-010027-r0tl01kq 302 10 program program NN cord-010027-r0tl01kq 302 11 assist assist VBP cord-010027-r0tl01kq 302 12 laboratories laboratory NNS cord-010027-r0tl01kq 302 13 however however RB cord-010027-r0tl01kq 302 14 ; ; : cord-010027-r0tl01kq 302 15 by by IN cord-010027-r0tl01kq 302 16 using use VBG cord-010027-r0tl01kq 302 17 standardized standardized JJ cord-010027-r0tl01kq 302 18 quality quality NN cord-010027-r0tl01kq 302 19 practices practice NNS cord-010027-r0tl01kq 302 20 such such JJ cord-010027-r0tl01kq 302 21 as as IN cord-010027-r0tl01kq 302 22 ISO iso NN cord-010027-r0tl01kq 302 23 15189 15189 CD cord-010027-r0tl01kq 302 24 and and CC cord-010027-r0tl01kq 302 25 the the DT cord-010027-r0tl01kq 302 26 use use NN cord-010027-r0tl01kq 302 27 of of IN cord-010027-r0tl01kq 302 28 external external JJ cord-010027-r0tl01kq 302 29 quality quality NN cord-010027-r0tl01kq 302 30 assurance assurance NN cord-010027-r0tl01kq 302 31 schemes scheme NNS cord-010027-r0tl01kq 302 32 can can MD cord-010027-r0tl01kq 302 33 provide provide VB cord-010027-r0tl01kq 302 34 essential essential JJ cord-010027-r0tl01kq 302 35 feedback feedback NN cord-010027-r0tl01kq 302 36 to to IN cord-010027-r0tl01kq 302 37 the the DT cord-010027-r0tl01kq 302 38 laboratory laboratory NN cord-010027-r0tl01kq 302 39 to to TO cord-010027-r0tl01kq 302 40 assure assure VB cord-010027-r0tl01kq 302 41 accurate accurate JJ cord-010027-r0tl01kq 302 42 molecular molecular JJ cord-010027-r0tl01kq 302 43 testing testing NN cord-010027-r0tl01kq 302 44 results result NNS cord-010027-r0tl01kq 302 45 . . . cord-010027-r0tl01kq 303 1   , cord-010027-r0tl01kq 303 2 How how WRB cord-010027-r0tl01kq 303 3 to to TO cord-010027-r0tl01kq 303 4 Run run VB cord-010027-r0tl01kq 303 5 a a DT cord-010027-r0tl01kq 303 6 Histopathology Histopathology NNP cord-010027-r0tl01kq 303 7 EQA EQA NNP cord-010027-r0tl01kq 303 8 in in IN cord-010027-r0tl01kq 303 9 the the DT cord-010027-r0tl01kq 303 10 Digital Digital NNP cord-010027-r0tl01kq 303 11 Age Age NNP cord-010027-r0tl01kq 303 12 P P NNP cord-010027-r0tl01kq 303 13 NJ NJ NNP cord-010027-r0tl01kq 303 14 Mayer Mayer NNP cord-010027-r0tl01kq 303 15 1 1 CD cord-010027-r0tl01kq 303 16 ; ; : cord-010027-r0tl01kq 303 17 P P NNP cord-010027-r0tl01kq 303 18 JD JD NNP cord-010027-r0tl01kq 303 19 Oxley Oxley NNP cord-010027-r0tl01kq 303 20 2 2 CD cord-010027-r0tl01kq 303 21 1 1 CD cord-010027-r0tl01kq 303 22 Cork Cork NNP cord-010027-r0tl01kq 303 23 University University NNP cord-010027-r0tl01kq 303 24 Hospital Hospital NNP cord-010027-r0tl01kq 303 25 , , , cord-010027-r0tl01kq 303 26 Cork Cork NNP cord-010027-r0tl01kq 303 27 , , , cord-010027-r0tl01kq 303 28 Ireland Ireland NNP cord-010027-r0tl01kq 303 29 ; ; : cord-010027-r0tl01kq 303 30 2 2 CD cord-010027-r0tl01kq 303 31 Southmead Southmead NNP cord-010027-r0tl01kq 303 32 Hospital Hospital NNP cord-010027-r0tl01kq 303 33 , , , cord-010027-r0tl01kq 303 34 Bristol Bristol NNP cord-010027-r0tl01kq 303 35 , , , cord-010027-r0tl01kq 303 36 UK UK NNP cord-010027-r0tl01kq 303 37 Interpretative Interpretative NNP cord-010027-r0tl01kq 303 38 EQA EQA NNP cord-010027-r0tl01kq 303 39 schemes scheme NNS cord-010027-r0tl01kq 303 40 in in IN cord-010027-r0tl01kq 303 41 Histopathology Histopathology NNP cord-010027-r0tl01kq 303 42 were be VBD cord-010027-r0tl01kq 303 43 first first RB cord-010027-r0tl01kq 303 44 introduced introduce VBN cord-010027-r0tl01kq 303 45 in in IN cord-010027-r0tl01kq 303 46 the the DT cord-010027-r0tl01kq 303 47 UK UK NNP cord-010027-r0tl01kq 303 48 in in IN cord-010027-r0tl01kq 303 49 the the DT cord-010027-r0tl01kq 303 50 mid-1980s mid-1980 NNS cord-010027-r0tl01kq 303 51 , , , cord-010027-r0tl01kq 303 52 well well RB cord-010027-r0tl01kq 303 53 before before IN cord-010027-r0tl01kq 303 54 the the DT cord-010027-r0tl01kq 303 55 advent advent NN cord-010027-r0tl01kq 303 56 of of IN cord-010027-r0tl01kq 303 57 the the DT cord-010027-r0tl01kq 303 58 Internet internet NN cord-010027-r0tl01kq 303 59 and and CC cord-010027-r0tl01kq 303 60 high high JJ cord-010027-r0tl01kq 303 61 resolution resolution NN cord-010027-r0tl01kq 303 62 digital digital JJ cord-010027-r0tl01kq 303 63 images image NNS cord-010027-r0tl01kq 303 64 . . . cord-010027-r0tl01kq 304 1 In in IN cord-010027-r0tl01kq 304 2 this this DT cord-010027-r0tl01kq 304 3 lecture lecture NN cord-010027-r0tl01kq 304 4 we -PRON- PRP cord-010027-r0tl01kq 304 5 will will MD cord-010027-r0tl01kq 304 6 outline outline VB cord-010027-r0tl01kq 304 7 key key JJ cord-010027-r0tl01kq 304 8 developments development NNS cord-010027-r0tl01kq 304 9 , , , cord-010027-r0tl01kq 304 10 as as IN cord-010027-r0tl01kq 304 11 EQA EQA NNP cord-010027-r0tl01kq 304 12 schemes scheme NNS cord-010027-r0tl01kq 304 13 have have VBP cord-010027-r0tl01kq 304 14 evolved evolve VBN cord-010027-r0tl01kq 304 15 into into IN cord-010027-r0tl01kq 304 16 the the DT cord-010027-r0tl01kq 304 17 digital digital JJ cord-010027-r0tl01kq 304 18 era era NN cord-010027-r0tl01kq 304 19 , , , cord-010027-r0tl01kq 304 20 with with IN cord-010027-r0tl01kq 304 21 particular particular JJ cord-010027-r0tl01kq 304 22 emphasis emphasis NN cord-010027-r0tl01kq 304 23 on on IN cord-010027-r0tl01kq 304 24 the the DT cord-010027-r0tl01kq 304 25 National National NNP cord-010027-r0tl01kq 304 26 Urological Urological NNP cord-010027-r0tl01kq 304 27 EQA EQA NNP cord-010027-r0tl01kq 304 28 scheme scheme NN cord-010027-r0tl01kq 304 29 , , , cord-010027-r0tl01kq 304 30 which which WDT cord-010027-r0tl01kq 304 31 we -PRON- PRP cord-010027-r0tl01kq 304 32 have have VBP cord-010027-r0tl01kq 304 33 run run VBN cord-010027-r0tl01kq 304 34 since since IN cord-010027-r0tl01kq 304 35 2007 2007 CD cord-010027-r0tl01kq 304 36 . . . cord-010027-r0tl01kq 305 1 We -PRON- PRP cord-010027-r0tl01kq 305 2 will will MD cord-010027-r0tl01kq 305 3 outline outline VB cord-010027-r0tl01kq 305 4 the the DT cord-010027-r0tl01kq 305 5 main main JJ cord-010027-r0tl01kq 305 6 practical practical JJ cord-010027-r0tl01kq 305 7 issues issue NNS cord-010027-r0tl01kq 305 8 involved involve VBN cord-010027-r0tl01kq 305 9 in in IN cord-010027-r0tl01kq 305 10 running run VBG cord-010027-r0tl01kq 305 11 an an DT cord-010027-r0tl01kq 305 12 EQA eqa NN cord-010027-r0tl01kq 305 13 scheme scheme NN cord-010027-r0tl01kq 305 14 and and CC cord-010027-r0tl01kq 305 15 share share VB cord-010027-r0tl01kq 305 16 our -PRON- PRP$ cord-010027-r0tl01kq 305 17 personal personal JJ cord-010027-r0tl01kq 305 18 experience experience NN cord-010027-r0tl01kq 305 19 of of IN cord-010027-r0tl01kq 305 20 the the DT cord-010027-r0tl01kq 305 21 development development NN cord-010027-r0tl01kq 305 22 and and CC cord-010027-r0tl01kq 305 23 introduction introduction NN cord-010027-r0tl01kq 305 24 of of IN cord-010027-r0tl01kq 305 25 the the DT cord-010027-r0tl01kq 305 26 web web NN cord-010027-r0tl01kq 305 27 - - HYPH cord-010027-r0tl01kq 305 28 based base VBN cord-010027-r0tl01kq 305 29 EQAlite EQAlite NNP cord-010027-r0tl01kq 305 30 software software NN cord-010027-r0tl01kq 305 31 , , , cord-010027-r0tl01kq 305 32 which which WDT cord-010027-r0tl01kq 305 33 is be VBZ cord-010027-r0tl01kq 305 34 being be VBG cord-010027-r0tl01kq 305 35 utilised utilise VBN cord-010027-r0tl01kq 305 36 by by IN cord-010027-r0tl01kq 305 37 increasing increase VBG cord-010027-r0tl01kq 305 38 numbers number NNS cord-010027-r0tl01kq 305 39 of of IN cord-010027-r0tl01kq 305 40 schemes scheme NNS cord-010027-r0tl01kq 305 41 . . . cord-010027-r0tl01kq 306 1 We -PRON- PRP cord-010027-r0tl01kq 306 2 will will MD cord-010027-r0tl01kq 306 3 address address VB cord-010027-r0tl01kq 306 4 the the DT cord-010027-r0tl01kq 306 5 pros pro NNS cord-010027-r0tl01kq 306 6 and and CC cord-010027-r0tl01kq 306 7 cons con NNS cord-010027-r0tl01kq 306 8 of of IN cord-010027-r0tl01kq 306 9 traditional traditional JJ cord-010027-r0tl01kq 306 10 glass glass NN cord-010027-r0tl01kq 306 11 slide slide NN cord-010027-r0tl01kq 306 12 - - HYPH cord-010027-r0tl01kq 306 13 based base VBN cord-010027-r0tl01kq 306 14 circulations circulation NNS cord-010027-r0tl01kq 306 15 versus versus IN cord-010027-r0tl01kq 306 16 virtual virtual JJ cord-010027-r0tl01kq 306 17 circulations circulation NNS cord-010027-r0tl01kq 306 18 using use VBG cord-010027-r0tl01kq 306 19 scanned scan VBN cord-010027-r0tl01kq 306 20 digital digital JJ cord-010027-r0tl01kq 306 21 images image NNS cord-010027-r0tl01kq 306 22 and and CC cord-010027-r0tl01kq 306 23 show show VB cord-010027-r0tl01kq 306 24 how how WRB cord-010027-r0tl01kq 306 25 the the DT cord-010027-r0tl01kq 306 26 digital digital JJ cord-010027-r0tl01kq 306 27 archive archive NN cord-010027-r0tl01kq 306 28 generated generate VBN cord-010027-r0tl01kq 306 29 from from IN cord-010027-r0tl01kq 306 30 old old JJ cord-010027-r0tl01kq 306 31 EQA EQA NNP cord-010027-r0tl01kq 306 32 circulations circulation NNS cord-010027-r0tl01kq 306 33 has have VBZ cord-010027-r0tl01kq 306 34 become become VBN cord-010027-r0tl01kq 306 35 a a DT cord-010027-r0tl01kq 306 36 valuable valuable JJ cord-010027-r0tl01kq 306 37 educational educational JJ cord-010027-r0tl01kq 306 38 and and CC cord-010027-r0tl01kq 306 39 teaching teaching NN cord-010027-r0tl01kq 306 40 resource resource NN cord-010027-r0tl01kq 306 41 . . . cord-010027-r0tl01kq 307 1 We -PRON- PRP cord-010027-r0tl01kq 307 2 will will MD cord-010027-r0tl01kq 307 3 also also RB cord-010027-r0tl01kq 307 4 briefly briefly RB cord-010027-r0tl01kq 307 5 explore explore VB cord-010027-r0tl01kq 307 6 , , , cord-010027-r0tl01kq 307 7 from from IN cord-010027-r0tl01kq 307 8 an an DT cord-010027-r0tl01kq 307 9 Organiser Organiser NNP cord-010027-r0tl01kq 307 10 's 's POS cord-010027-r0tl01kq 307 11 perspective perspective NN cord-010027-r0tl01kq 307 12 , , , cord-010027-r0tl01kq 307 13 the the DT cord-010027-r0tl01kq 307 14 major major JJ cord-010027-r0tl01kq 307 15 issues issue NNS cord-010027-r0tl01kq 307 16 facing face VBG cord-010027-r0tl01kq 307 17 EQA EQA NNP cord-010027-r0tl01kq 307 18 schemes scheme NNS cord-010027-r0tl01kq 307 19 in in IN cord-010027-r0tl01kq 307 20 the the DT cord-010027-r0tl01kq 307 21 future future NN cord-010027-r0tl01kq 307 22 , , , cord-010027-r0tl01kq 307 23 as as IN cord-010027-r0tl01kq 307 24 EQA EQA NNP cord-010027-r0tl01kq 307 25 performance performance NN cord-010027-r0tl01kq 307 26 becomes become VBZ cord-010027-r0tl01kq 307 27 more more RBR cord-010027-r0tl01kq 307 28 embedded embed VBN cord-010027-r0tl01kq 307 29 into into IN cord-010027-r0tl01kq 307 30 revalidation revalidation NN cord-010027-r0tl01kq 307 31 and and CC cord-010027-r0tl01kq 307 32 fitness fitness NN cord-010027-r0tl01kq 307 33 to to TO cord-010027-r0tl01kq 307 34 practice practice VB cord-010027-r0tl01kq 307 35 . . . cord-010027-r0tl01kq 308 1   NFP cord-010027-r0tl01kq 308 2 Molecular Molecular NNP cord-010027-r0tl01kq 308 3 Pathology Pathology NNP cord-010027-r0tl01kq 308 4 : : : cord-010027-r0tl01kq 308 5 The the DT cord-010027-r0tl01kq 308 6 Future Future NNP cord-010027-r0tl01kq 308 7 ? ? . cord-010027-r0tl01kq 309 1 P p NN cord-010027-r0tl01kq 309 2 CS CS NNP cord-010027-r0tl01kq 309 3 Herrington Herrington NNP cord-010027-r0tl01kq 309 4 Molecular Molecular NNP cord-010027-r0tl01kq 309 5 pathology pathology NN cord-010027-r0tl01kq 309 6 is be VBZ cord-010027-r0tl01kq 309 7 already already RB cord-010027-r0tl01kq 309 8 central central JJ cord-010027-r0tl01kq 309 9 to to IN cord-010027-r0tl01kq 309 10 stratified stratified JJ cord-010027-r0tl01kq 309 11 medicine medicine NN cord-010027-r0tl01kq 309 12 . . . cord-010027-r0tl01kq 310 1 And and CC cord-010027-r0tl01kq 310 2 the the DT cord-010027-r0tl01kq 310 3 ability ability NN cord-010027-r0tl01kq 310 4 of of IN cord-010027-r0tl01kq 310 5 pathologists pathologist NNS cord-010027-r0tl01kq 310 6 to to TO cord-010027-r0tl01kq 310 7 understand understand VB cord-010027-r0tl01kq 310 8 disease disease NN cord-010027-r0tl01kq 310 9 phenotype phenotype NN cord-010027-r0tl01kq 310 10 is be VBZ cord-010027-r0tl01kq 310 11 essential essential JJ cord-010027-r0tl01kq 310 12 for for IN cord-010027-r0tl01kq 310 13 interpretation interpretation NN cord-010027-r0tl01kq 310 14 of of IN cord-010027-r0tl01kq 310 15 the the DT cord-010027-r0tl01kq 310 16 current current JJ cord-010027-r0tl01kq 310 17 explosion explosion NN cord-010027-r0tl01kq 310 18 in in IN cord-010027-r0tl01kq 310 19 ' ' `` cord-010027-r0tl01kq 310 20 -omics -omic NNS cord-010027-r0tl01kq 310 21 ' ' POS cord-010027-r0tl01kq 310 22 data datum NNS cord-010027-r0tl01kq 310 23 . . . cord-010027-r0tl01kq 311 1 Moreover moreover RB cord-010027-r0tl01kq 311 2 , , , cord-010027-r0tl01kq 311 3 the the DT cord-010027-r0tl01kq 311 4 future future NN cord-010027-r0tl01kq 311 5 of of IN cord-010027-r0tl01kq 311 6 stratified stratified JJ cord-010027-r0tl01kq 311 7 medicine medicine NN cord-010027-r0tl01kq 311 8 will will MD cord-010027-r0tl01kq 311 9 require require VB cord-010027-r0tl01kq 311 10 integration integration NN cord-010027-r0tl01kq 311 11 of of IN cord-010027-r0tl01kq 311 12 information information NN cord-010027-r0tl01kq 311 13 from from IN cord-010027-r0tl01kq 311 14 different different JJ cord-010027-r0tl01kq 311 15 sources source NNS cord-010027-r0tl01kq 311 16 , , , cord-010027-r0tl01kq 311 17 in in IN cord-010027-r0tl01kq 311 18 the the DT cord-010027-r0tl01kq 311 19 context context NN cord-010027-r0tl01kq 311 20 of of IN cord-010027-r0tl01kq 311 21 disease disease NN cord-010027-r0tl01kq 311 22 phenotype phenotype NN cord-010027-r0tl01kq 311 23 , , , cord-010027-r0tl01kq 311 24 to to TO cord-010027-r0tl01kq 311 25 inform inform VB cord-010027-r0tl01kq 311 26 patient patient JJ cord-010027-r0tl01kq 311 27 management management NN cord-010027-r0tl01kq 311 28 : : : cord-010027-r0tl01kq 311 29 pathologists pathologist NNS cord-010027-r0tl01kq 311 30 are be VBP cord-010027-r0tl01kq 311 31 ideally ideally RB cord-010027-r0tl01kq 311 32 placed place VBN cord-010027-r0tl01kq 311 33 to to TO cord-010027-r0tl01kq 311 34 lead lead VB cord-010027-r0tl01kq 311 35 this this DT cord-010027-r0tl01kq 311 36 integration integration NN cord-010027-r0tl01kq 311 37 . . . cord-010027-r0tl01kq 312 1 This this DT cord-010027-r0tl01kq 312 2 applies apply VBZ cord-010027-r0tl01kq 312 3 not not RB cord-010027-r0tl01kq 312 4 only only RB cord-010027-r0tl01kq 312 5 to to IN cord-010027-r0tl01kq 312 6 data datum NNS cord-010027-r0tl01kq 312 7 derived derive VBN cord-010027-r0tl01kq 312 8 from from IN cord-010027-r0tl01kq 312 9 ex ex NNP cord-010027-r0tl01kq 312 10 vivo vivo NN cord-010027-r0tl01kq 312 11 cells cell NNS cord-010027-r0tl01kq 312 12 and and CC cord-010027-r0tl01kq 312 13 tissues tissue NNS cord-010027-r0tl01kq 312 14 but but CC cord-010027-r0tl01kq 312 15 also also RB cord-010027-r0tl01kq 312 16 to to IN cord-010027-r0tl01kq 312 17 molecular molecular JJ cord-010027-r0tl01kq 312 18 imaging imaging NN cord-010027-r0tl01kq 312 19 data datum NNS cord-010027-r0tl01kq 312 20 , , , cord-010027-r0tl01kq 312 21 which which WDT cord-010027-r0tl01kq 312 22 require require VBP cord-010027-r0tl01kq 312 23 accurate accurate JJ cord-010027-r0tl01kq 312 24 correlation correlation NN cord-010027-r0tl01kq 312 25 with with IN cord-010027-r0tl01kq 312 26 cell cell NN cord-010027-r0tl01kq 312 27 and and CC cord-010027-r0tl01kq 312 28 tissue tissue NN cord-010027-r0tl01kq 312 29 phenotype phenotype NN cord-010027-r0tl01kq 312 30 for for IN cord-010027-r0tl01kq 312 31 accurate accurate JJ cord-010027-r0tl01kq 312 32 interpretation interpretation NN cord-010027-r0tl01kq 312 33 . . . cord-010027-r0tl01kq 313 1 Molecular molecular JJ cord-010027-r0tl01kq 313 2 pathology pathology NN cord-010027-r0tl01kq 313 3 is be VBZ cord-010027-r0tl01kq 313 4 key key JJ cord-010027-r0tl01kq 313 5 to to IN cord-010027-r0tl01kq 313 6 the the DT cord-010027-r0tl01kq 313 7 future future NN cord-010027-r0tl01kq 313 8 of of IN cord-010027-r0tl01kq 313 9 pathology pathology NN cord-010027-r0tl01kq 313 10 ; ; : cord-010027-r0tl01kq 313 11 and and CC cord-010027-r0tl01kq 313 12 this this DT cord-010027-r0tl01kq 313 13 future future NN cord-010027-r0tl01kq 313 14 extends extend VBZ cord-010027-r0tl01kq 313 15 beyond beyond IN cord-010027-r0tl01kq 313 16 the the DT cord-010027-r0tl01kq 313 17 traditional traditional JJ cord-010027-r0tl01kq 313 18 light light JJ cord-010027-r0tl01kq 313 19 microscope microscope NN cord-010027-r0tl01kq 314 1 The the DT cord-010027-r0tl01kq 314 2 following follow VBG cord-010027-r0tl01kq 314 3 Plenary Plenary NNP cord-010027-r0tl01kq 314 4 , , , cord-010027-r0tl01kq 314 5 Oral oral JJ cord-010027-r0tl01kq 314 6 and and CC cord-010027-r0tl01kq 314 7 Poster poster NN cord-010027-r0tl01kq 314 8 abstracts abstract NNS cord-010027-r0tl01kq 314 9 have have VBP cord-010027-r0tl01kq 314 10 been be VBN cord-010027-r0tl01kq 314 11 subjected subject VBN cord-010027-r0tl01kq 314 12 to to IN cord-010027-r0tl01kq 314 13 peer peer NN cord-010027-r0tl01kq 314 14 review review NN cord-010027-r0tl01kq 314 15 . . . cord-010027-r0tl01kq 315 1 Hypothesis hypothesis NN cord-010027-r0tl01kq 315 2 : : : cord-010027-r0tl01kq 315 3 Suppressor suppressor NN cord-010027-r0tl01kq 315 4 of of IN cord-010027-r0tl01kq 315 5 cytokine cytokine NN cord-010027-r0tl01kq 315 6 signalling signalling NN cord-010027-r0tl01kq 316 1 ( ( -LRB- cord-010027-r0tl01kq 316 2 SOCS SOCS NNP cord-010027-r0tl01kq 316 3 ) ) -RRB- cord-010027-r0tl01kq 316 4 family family NN cord-010027-r0tl01kq 316 5 members member NNS cord-010027-r0tl01kq 316 6 play play VBP cord-010027-r0tl01kq 316 7 a a DT cord-010027-r0tl01kq 316 8 vital vital JJ cord-010027-r0tl01kq 316 9 role role NN cord-010027-r0tl01kq 316 10 in in IN cord-010027-r0tl01kq 316 11 the the DT cord-010027-r0tl01kq 316 12 activation activation NN cord-010027-r0tl01kq 316 13 of of IN cord-010027-r0tl01kq 316 14 the the DT cord-010027-r0tl01kq 316 15 JAK JAK NNP cord-010027-r0tl01kq 316 16 / / SYM cord-010027-r0tl01kq 316 17 STAT STAT NNP cord-010027-r0tl01kq 316 18 signalling signal VBG cord-010027-r0tl01kq 316 19 pathway pathway NN cord-010027-r0tl01kq 316 20 via via IN cord-010027-r0tl01kq 316 21 a a DT cord-010027-r0tl01kq 316 22 negative negative JJ cord-010027-r0tl01kq 316 23 feedback feedback NN cord-010027-r0tl01kq 316 24 loop loop NN cord-010027-r0tl01kq 316 25 and and CC cord-010027-r0tl01kq 316 26 have have VBP cord-010027-r0tl01kq 316 27 been be VBN cord-010027-r0tl01kq 316 28 implicated implicate VBN cord-010027-r0tl01kq 316 29 in in IN cord-010027-r0tl01kq 316 30 the the DT cord-010027-r0tl01kq 316 31 development development NN cord-010027-r0tl01kq 316 32 of of IN cord-010027-r0tl01kq 316 33 cancers cancer NNS cord-010027-r0tl01kq 316 34 . . . cord-010027-r0tl01kq 317 1 In in IN cord-010027-r0tl01kq 317 2 breast breast NN cord-010027-r0tl01kq 317 3 cancer cancer NN cord-010027-r0tl01kq 317 4 ( ( -LRB- cord-010027-r0tl01kq 317 5 BC BC NNP cord-010027-r0tl01kq 317 6 ) ) -RRB- cord-010027-r0tl01kq 317 7 , , , cord-010027-r0tl01kq 317 8 SOCS2 SOCS2 NNP cord-010027-r0tl01kq 317 9 mRNA mRNA NNP cord-010027-r0tl01kq 317 10 has have VBZ cord-010027-r0tl01kq 317 11 been be VBN cord-010027-r0tl01kq 317 12 correlated correlate VBN cord-010027-r0tl01kq 317 13 with with IN cord-010027-r0tl01kq 317 14 oestrogen oestrogen NN cord-010027-r0tl01kq 317 15 receptor receptor NN cord-010027-r0tl01kq 317 16 ( ( -LRB- cord-010027-r0tl01kq 317 17 ER ER NNP cord-010027-r0tl01kq 317 18 ) ) -RRB- cord-010027-r0tl01kq 317 19 positive positive JJ cord-010027-r0tl01kq 317 20 tumours tumour NNS cord-010027-r0tl01kq 317 21 favouring favour VBG cord-010027-r0tl01kq 317 22 a a DT cord-010027-r0tl01kq 317 23 good good JJ cord-010027-r0tl01kq 317 24 prognosis prognosis NN cord-010027-r0tl01kq 317 25 ( ( -LRB- cord-010027-r0tl01kq 317 26 BMC BMC NNP cord-010027-r0tl01kq 317 27 Cancer Cancer NNP cord-010027-r0tl01kq 317 28 2007 2007 CD cord-010027-r0tl01kq 317 29 , , , cord-010027-r0tl01kq 317 30 7:136 7:136 CD cord-010027-r0tl01kq 317 31 ) ) -RRB- cord-010027-r0tl01kq 317 32 . . . cord-010027-r0tl01kq 318 1 This this DT cord-010027-r0tl01kq 318 2 study study NN cord-010027-r0tl01kq 318 3 aimed aim VBD cord-010027-r0tl01kq 318 4 to to TO cord-010027-r0tl01kq 318 5 determine determine VB cord-010027-r0tl01kq 318 6 whether whether IN cord-010027-r0tl01kq 318 7 SOCS2 socs2 NN cord-010027-r0tl01kq 318 8 at at IN cord-010027-r0tl01kq 318 9 the the DT cord-010027-r0tl01kq 318 10 protein protein NN cord-010027-r0tl01kq 318 11 level level NN cord-010027-r0tl01kq 318 12 correlates correlate VBZ cord-010027-r0tl01kq 318 13 with with IN cord-010027-r0tl01kq 318 14 tumour tumour NN cord-010027-r0tl01kq 318 15 morphology morphology NN cord-010027-r0tl01kq 318 16 and and CC cord-010027-r0tl01kq 318 17 low low JJ cord-010027-r0tl01kq 318 18 grade grade NN cord-010027-r0tl01kq 318 19 in in IN cord-010027-r0tl01kq 318 20 BC BC NNP cord-010027-r0tl01kq 318 21 . . . cord-010027-r0tl01kq 319 1 Methods method NNS cord-010027-r0tl01kq 319 2 : : : cord-010027-r0tl01kq 319 3 Differential differential JJ cord-010027-r0tl01kq 319 4 expression expression NN cord-010027-r0tl01kq 319 5 analysis analysis NN cord-010027-r0tl01kq 319 6 between between IN cord-010027-r0tl01kq 319 7 tubular tubular JJ cord-010027-r0tl01kq 319 8 and and CC cord-010027-r0tl01kq 319 9 grade grade NN cord-010027-r0tl01kq 319 10 matched match VBN cord-010027-r0tl01kq 319 11 NSTs nst NNS cord-010027-r0tl01kq 319 12 were be VBD cord-010027-r0tl01kq 319 13 undertaken undertake VBN cord-010027-r0tl01kq 319 14 in in IN cord-010027-r0tl01kq 319 15 the the DT cord-010027-r0tl01kq 319 16 METABRIC METABRIC NNP cord-010027-r0tl01kq 319 17 cohort cohort NN cord-010027-r0tl01kq 319 18 . . . cord-010027-r0tl01kq 320 1 Primary primary JJ cord-010027-r0tl01kq 320 2 breast breast NN cord-010027-r0tl01kq 320 3 cancer cancer NN cord-010027-r0tl01kq 320 4 tissue tissue NN cord-010027-r0tl01kq 320 5 microarrays microarray NNS cord-010027-r0tl01kq 320 6 ( ( -LRB- cord-010027-r0tl01kq 320 7 n=1041 n=1041 CD cord-010027-r0tl01kq 320 8 ) ) -RRB- cord-010027-r0tl01kq 320 9 were be VBD cord-010027-r0tl01kq 320 10 immuno immuno JJ cord-010027-r0tl01kq 320 11 - - HYPH cord-010027-r0tl01kq 320 12 stained stained JJ cord-010027-r0tl01kq 320 13 for for IN cord-010027-r0tl01kq 320 14 SOCS2 socs2 NN cord-010027-r0tl01kq 320 15 and and CC cord-010027-r0tl01kq 320 16 expression expression NN cord-010027-r0tl01kq 320 17 patterns pattern NNS cord-010027-r0tl01kq 320 18 correlated correlate VBN cord-010027-r0tl01kq 320 19 with with IN cord-010027-r0tl01kq 320 20 clinico clinico NN cord-010027-r0tl01kq 320 21 - - HYPH cord-010027-r0tl01kq 320 22 pathological pathological JJ cord-010027-r0tl01kq 320 23 and and CC cord-010027-r0tl01kq 320 24 molecular molecular JJ cord-010027-r0tl01kq 320 25 variables variable NNS cord-010027-r0tl01kq 320 26 including include VBG cord-010027-r0tl01kq 320 27 outcome outcome NN cord-010027-r0tl01kq 320 28 . . . cord-010027-r0tl01kq 321 1 Results result NNS cord-010027-r0tl01kq 321 2 : : : cord-010027-r0tl01kq 322 1 Differential differential JJ cord-010027-r0tl01kq 322 2 gene gene NN cord-010027-r0tl01kq 322 3 expression expression NN cord-010027-r0tl01kq 322 4 analysis analysis NN cord-010027-r0tl01kq 322 5 on on IN cord-010027-r0tl01kq 322 6 the the DT cord-010027-r0tl01kq 322 7 METABRIC METABRIC NNP cord-010027-r0tl01kq 322 8 data datum NNS cord-010027-r0tl01kq 322 9 identified identify VBD cord-010027-r0tl01kq 322 10 SOCS2 socs2 NN cord-010027-r0tl01kq 322 11 as as IN cord-010027-r0tl01kq 322 12 the the DT cord-010027-r0tl01kq 322 13 top top JJ cord-010027-r0tl01kq 322 14 gene gene NN cord-010027-r0tl01kq 322 15 with with IN cord-010027-r0tl01kq 322 16 a a DT cord-010027-r0tl01kq 322 17 significant significant JJ cord-010027-r0tl01kq 322 18 overexpression overexpression NN cord-010027-r0tl01kq 322 19 in in IN cord-010027-r0tl01kq 322 20 the the DT cord-010027-r0tl01kq 322 21 tubular tubular JJ cord-010027-r0tl01kq 322 22 type type NN cord-010027-r0tl01kq 322 23 as as IN cord-010027-r0tl01kq 322 24 compared compare VBN cord-010027-r0tl01kq 322 25 to to IN cord-010027-r0tl01kq 322 26 low low JJ cord-010027-r0tl01kq 322 27 grade grade NN cord-010027-r0tl01kq 322 28 NSTs nst NNS cord-010027-r0tl01kq 322 29 ( ( -LRB- cord-010027-r0tl01kq 322 30 adjusted adjust VBN cord-010027-r0tl01kq 322 31 p p NN cord-010027-r0tl01kq 322 32 value=0.004 value=0.004 NN cord-010027-r0tl01kq 322 33 ) ) -RRB- cord-010027-r0tl01kq 322 34 . . . cord-010027-r0tl01kq 323 1 Immunohistochemistry Immunohistochemistry NNP cord-010027-r0tl01kq 323 2 on on IN cord-010027-r0tl01kq 323 3 the the DT cord-010027-r0tl01kq 323 4 Tenovus Tenovus NNP cord-010027-r0tl01kq 323 5 series series NN cord-010027-r0tl01kq 323 6 showed show VBD cord-010027-r0tl01kq 323 7 positive positive JJ cord-010027-r0tl01kq 323 8 nuclear nuclear JJ cord-010027-r0tl01kq 323 9 SOCS2 socs2 NN cord-010027-r0tl01kq 323 10 expression expression NN cord-010027-r0tl01kq 323 11 to to TO cord-010027-r0tl01kq 323 12 correlate correlate VB cord-010027-r0tl01kq 323 13 with with IN cord-010027-r0tl01kq 323 14 tumours tumour NNS cord-010027-r0tl01kq 323 15 of of IN cord-010027-r0tl01kq 323 16 low low JJ cord-010027-r0tl01kq 323 17 grade grade NN cord-010027-r0tl01kq 323 18 ( ( -LRB- cord-010027-r0tl01kq 323 19 p<0.0001 p<0.0001 NNP cord-010027-r0tl01kq 323 20 ) ) -RRB- cord-010027-r0tl01kq 323 21 , , , cord-010027-r0tl01kq 323 22 low low JJ cord-010027-r0tl01kq 323 23 proliferation proliferation NN cord-010027-r0tl01kq 323 24 ( ( -LRB- cord-010027-r0tl01kq 323 25 Ki67 Ki67 NNP cord-010027-r0tl01kq 323 26 p<0.0001 p<0.0001 NNP cord-010027-r0tl01kq 323 27 ) ) -RRB- cord-010027-r0tl01kq 323 28 , , , cord-010027-r0tl01kq 323 29 ER ER NNP cord-010027-r0tl01kq 323 30 / / SYM cord-010027-r0tl01kq 323 31 PR PR NNP cord-010027-r0tl01kq 323 32 positive positive JJ cord-010027-r0tl01kq 323 33 ( ( -LRB- cord-010027-r0tl01kq 323 34 p<0.0001 p<0.0001 NNP cord-010027-r0tl01kq 323 35 ) ) -RRB- cord-010027-r0tl01kq 323 36 phenotype phenotype NN cord-010027-r0tl01kq 323 37 and and CC cord-010027-r0tl01kq 323 38 tubular tubular JJ cord-010027-r0tl01kq 323 39 morphology morphology NN cord-010027-r0tl01kq 323 40 ( ( -LRB- cord-010027-r0tl01kq 323 41 p<0.0001 p<0.0001 NNP cord-010027-r0tl01kq 323 42 ) ) -RRB- cord-010027-r0tl01kq 323 43 ; ; : cord-010027-r0tl01kq 323 44 as as RB cord-010027-r0tl01kq 323 45 well well RB cord-010027-r0tl01kq 323 46 as as IN cord-010027-r0tl01kq 323 47 negative negative JJ cord-010027-r0tl01kq 323 48 HER2 her2 JJ cord-010027-r0tl01kq 323 49 status status NN cord-010027-r0tl01kq 323 50 ( ( -LRB- cord-010027-r0tl01kq 323 51 p=0.005 p=0.005 NNP cord-010027-r0tl01kq 323 52 ) ) -RRB- cord-010027-r0tl01kq 323 53 and and CC cord-010027-r0tl01kq 323 54 non non JJ cord-010027-r0tl01kq 323 55 - - JJ cord-010027-r0tl01kq 323 56 triple triple JJ cord-010027-r0tl01kq 323 57 negative negative JJ cord-010027-r0tl01kq 323 58 status status NN cord-010027-r0tl01kq 323 59 ( ( -LRB- cord-010027-r0tl01kq 323 60 p<0.0001 p<0.0001 NNP cord-010027-r0tl01kq 323 61 ) ) -RRB- cord-010027-r0tl01kq 323 62 . . . cord-010027-r0tl01kq 324 1 Survival survival NN cord-010027-r0tl01kq 324 2 analysis analysis NN cord-010027-r0tl01kq 324 3 revealed reveal VBD cord-010027-r0tl01kq 324 4 significant significant JJ cord-010027-r0tl01kq 324 5 associations association NNS cord-010027-r0tl01kq 324 6 with with IN cord-010027-r0tl01kq 324 7 long long JJ cord-010027-r0tl01kq 324 8 term term NN cord-010027-r0tl01kq 324 9 breast breast NN cord-010027-r0tl01kq 324 10 cancer cancer NN cord-010027-r0tl01kq 324 11 specific specific JJ cord-010027-r0tl01kq 324 12 survival survival NN cord-010027-r0tl01kq 324 13 ( ( -LRB- cord-010027-r0tl01kq 324 14 p=0.019 p=0.019 NNP cord-010027-r0tl01kq 324 15 ) ) -RRB- cord-010027-r0tl01kq 324 16 . . . cord-010027-r0tl01kq 325 1 Positive positive JJ cord-010027-r0tl01kq 325 2 SOCS2 socs2 NN cord-010027-r0tl01kq 325 3 correlations correlation NNS cord-010027-r0tl01kq 325 4 were be VBD cord-010027-r0tl01kq 325 5 also also RB cord-010027-r0tl01kq 325 6 observed observe VBN cord-010027-r0tl01kq 325 7 with with IN cord-010027-r0tl01kq 325 8 the the DT cord-010027-r0tl01kq 325 9 expression expression NN cord-010027-r0tl01kq 325 10 of of IN cord-010027-r0tl01kq 325 11 androgen androgen NN cord-010027-r0tl01kq 325 12 receptor receptor NN cord-010027-r0tl01kq 325 13 ( ( -LRB- cord-010027-r0tl01kq 325 14 AR AR NNP cord-010027-r0tl01kq 325 15 ) ) -RRB- cord-010027-r0tl01kq 325 16 ( ( -LRB- cord-010027-r0tl01kq 325 17 p<0.0001 p<0.0001 NNP cord-010027-r0tl01kq 325 18 ) ) -RRB- cord-010027-r0tl01kq 325 19 and and CC cord-010027-r0tl01kq 325 20 STAT3 STAT3 NNP cord-010027-r0tl01kq 325 21 ( ( -LRB- cord-010027-r0tl01kq 325 22 p=0.001 p=0.001 NNP cord-010027-r0tl01kq 325 23 ) ) -RRB- cord-010027-r0tl01kq 325 24 , , , cord-010027-r0tl01kq 325 25 further further RB cord-010027-r0tl01kq 325 26 indicating indicate VBG cord-010027-r0tl01kq 325 27 its -PRON- PRP$ cord-010027-r0tl01kq 325 28 role role NN cord-010027-r0tl01kq 325 29 in in IN cord-010027-r0tl01kq 325 30 these these DT cord-010027-r0tl01kq 325 31 two two CD cord-010027-r0tl01kq 325 32 signalling signal VBG cord-010027-r0tl01kq 325 33 pathways pathway NNS cord-010027-r0tl01kq 325 34 . . . cord-010027-r0tl01kq 326 1 Conclusions conclusion NNS cord-010027-r0tl01kq 326 2 : : : cord-010027-r0tl01kq 327 1 Results result NNS cord-010027-r0tl01kq 327 2 from from IN cord-010027-r0tl01kq 327 3 this this DT cord-010027-r0tl01kq 327 4 study study NN cord-010027-r0tl01kq 327 5 suggest suggest VBP cord-010027-r0tl01kq 327 6 SOCS2 socs2 NN cord-010027-r0tl01kq 327 7 to to TO cord-010027-r0tl01kq 327 8 be be VB cord-010027-r0tl01kq 327 9 a a DT cord-010027-r0tl01kq 327 10 marker marker NN cord-010027-r0tl01kq 327 11 of of IN cord-010027-r0tl01kq 327 12 favourable favourable JJ cord-010027-r0tl01kq 327 13 prognosis prognosis NN cord-010027-r0tl01kq 327 14 : : : cord-010027-r0tl01kq 327 15 identifying identify VBG cord-010027-r0tl01kq 327 16 low low JJ cord-010027-r0tl01kq 327 17 grade grade NN cord-010027-r0tl01kq 327 18 , , , cord-010027-r0tl01kq 327 19 ER ER NNP cord-010027-r0tl01kq 327 20 positive positive JJ cord-010027-r0tl01kq 327 21 breast breast NN cord-010027-r0tl01kq 327 22 tumours tumour NNS cord-010027-r0tl01kq 327 23 with with IN cord-010027-r0tl01kq 327 24 particular particular JJ cord-010027-r0tl01kq 327 25 correlations correlation NNS cord-010027-r0tl01kq 327 26 to to IN cord-010027-r0tl01kq 327 27 the the DT cord-010027-r0tl01kq 327 28 tubular tubular JJ cord-010027-r0tl01kq 327 29 histological histological JJ cord-010027-r0tl01kq 327 30 tumour tumour NN cord-010027-r0tl01kq 327 31 type type NN cord-010027-r0tl01kq 327 32 . . . cord-010027-r0tl01kq 328 1 Background background NN cord-010027-r0tl01kq 328 2 : : : cord-010027-r0tl01kq 329 1 Ovarian ovarian JJ cord-010027-r0tl01kq 329 2 cancer cancer NN cord-010027-r0tl01kq 329 3 is be VBZ cord-010027-r0tl01kq 329 4 the the DT cord-010027-r0tl01kq 329 5 fifth fifth JJ cord-010027-r0tl01kq 329 6 leading leading JJ cord-010027-r0tl01kq 329 7 cause cause NN cord-010027-r0tl01kq 329 8 of of IN cord-010027-r0tl01kq 329 9 cancer cancer NN cord-010027-r0tl01kq 329 10 in in IN cord-010027-r0tl01kq 329 11 women woman NNS cord-010027-r0tl01kq 329 12 and and CC cord-010027-r0tl01kq 329 13 has have VBZ cord-010027-r0tl01kq 329 14 poor poor JJ cord-010027-r0tl01kq 329 15 long long JJ cord-010027-r0tl01kq 329 16 - - HYPH cord-010027-r0tl01kq 329 17 term term NN cord-010027-r0tl01kq 329 18 survival survival NN cord-010027-r0tl01kq 329 19 , , , cord-010027-r0tl01kq 329 20 in in IN cord-010027-r0tl01kq 329 21 part part NN cord-010027-r0tl01kq 329 22 , , , cord-010027-r0tl01kq 329 23 due due IN cord-010027-r0tl01kq 329 24 to to IN cord-010027-r0tl01kq 329 25 chemoresistance chemoresistance NNP cord-010027-r0tl01kq 329 26 . . . cord-010027-r0tl01kq 330 1 Tumour tumour NN cord-010027-r0tl01kq 330 2 hypoxia hypoxia NN cord-010027-r0tl01kq 330 3 is be VBZ cord-010027-r0tl01kq 330 4 associated associate VBN cord-010027-r0tl01kq 330 5 with with IN cord-010027-r0tl01kq 330 6 chemoresistance chemoresistance NN cord-010027-r0tl01kq 330 7 in in IN cord-010027-r0tl01kq 330 8 ovarian ovarian JJ cord-010027-r0tl01kq 330 9 cancer cancer NN cord-010027-r0tl01kq 330 10 . . . cord-010027-r0tl01kq 331 1 However however RB cord-010027-r0tl01kq 331 2 , , , cord-010027-r0tl01kq 331 3 relatively relatively RB cord-010027-r0tl01kq 331 4 little little JJ cord-010027-r0tl01kq 331 5 is be VBZ cord-010027-r0tl01kq 331 6 known know VBN cord-010027-r0tl01kq 331 7 about about IN cord-010027-r0tl01kq 331 8 the the DT cord-010027-r0tl01kq 331 9 genes gene NNS cord-010027-r0tl01kq 331 10 activated activate VBN cord-010027-r0tl01kq 331 11 in in IN cord-010027-r0tl01kq 331 12 ovarian ovarian JJ cord-010027-r0tl01kq 331 13 cancer cancer NN cord-010027-r0tl01kq 331 14 which which WDT cord-010027-r0tl01kq 331 15 cause cause VBP cord-010027-r0tl01kq 331 16 chemoresistance chemoresistance NN cord-010027-r0tl01kq 331 17 due due IN cord-010027-r0tl01kq 331 18 to to IN cord-010027-r0tl01kq 331 19 hypoxia hypoxia NN cord-010027-r0tl01kq 331 20 . . . cord-010027-r0tl01kq 332 1 This this DT cord-010027-r0tl01kq 332 2 study study NN cord-010027-r0tl01kq 332 3 aimed aim VBD cord-010027-r0tl01kq 332 4 to to TO cord-010027-r0tl01kq 332 5 firstly firstly RB cord-010027-r0tl01kq 332 6 identify identify VB cord-010027-r0tl01kq 332 7 genes gene NNS cord-010027-r0tl01kq 332 8 whose whose WP$ cord-010027-r0tl01kq 332 9 expression expression NN cord-010027-r0tl01kq 332 10 is be VBZ cord-010027-r0tl01kq 332 11 associated associate VBN cord-010027-r0tl01kq 332 12 with with IN cord-010027-r0tl01kq 332 13 hypoxia hypoxia NN cord-010027-r0tl01kq 332 14 - - HYPH cord-010027-r0tl01kq 332 15 induced induce VBN cord-010027-r0tl01kq 332 16 chemoresistance chemoresistance NN cord-010027-r0tl01kq 332 17 , , , cord-010027-r0tl01kq 332 18 and and CC cord-010027-r0tl01kq 332 19 secondly secondly RB cord-010027-r0tl01kq 332 20 select select VB cord-010027-r0tl01kq 332 21 hypoxia hypoxia NN cord-010027-r0tl01kq 332 22 - - HYPH cord-010027-r0tl01kq 332 23 associated associate VBN cord-010027-r0tl01kq 332 24 biomarkers biomarker NNS cord-010027-r0tl01kq 332 25 and and CC cord-010027-r0tl01kq 332 26 evaluate evaluate VB cord-010027-r0tl01kq 332 27 their -PRON- PRP$ cord-010027-r0tl01kq 332 28 expression expression NN cord-010027-r0tl01kq 332 29 in in IN cord-010027-r0tl01kq 332 30 ovarian ovarian JJ cord-010027-r0tl01kq 332 31 tumours tumour NNS cord-010027-r0tl01kq 332 32 . . . cord-010027-r0tl01kq 333 1 Methods method NNS cord-010027-r0tl01kq 333 2 : : : cord-010027-r0tl01kq 334 1 Cisplatin cisplatin NN cord-010027-r0tl01kq 334 2 - - HYPH cord-010027-r0tl01kq 334 3 sensitive sensitive JJ cord-010027-r0tl01kq 334 4 ( ( -LRB- cord-010027-r0tl01kq 334 5 A2780 A2780 NNP cord-010027-r0tl01kq 334 6 ) ) -RRB- cord-010027-r0tl01kq 334 7 and and CC cord-010027-r0tl01kq 334 8 cisplatin cisplatin NN cord-010027-r0tl01kq 334 9 - - HYPH cord-010027-r0tl01kq 334 10 resistant resistant JJ cord-010027-r0tl01kq 335 1 ( ( -LRB- cord-010027-r0tl01kq 335 2 A2780cis A2780cis NNP cord-010027-r0tl01kq 335 3 ) ) -RRB- cord-010027-r0tl01kq 335 4 ovarian ovarian JJ cord-010027-r0tl01kq 335 5 cancer cancer NN cord-010027-r0tl01kq 335 6 cell cell NN cord-010027-r0tl01kq 335 7 lines line NNS cord-010027-r0tl01kq 335 8 were be VBD cord-010027-r0tl01kq 335 9 exposed expose VBN cord-010027-r0tl01kq 335 10 to to IN cord-010027-r0tl01kq 335 11 combinations combination NNS cord-010027-r0tl01kq 335 12 of of IN cord-010027-r0tl01kq 335 13 hypoxia hypoxia NN cord-010027-r0tl01kq 335 14 and/or and/or CC cord-010027-r0tl01kq 336 1 cisplatin cisplatin RB cord-010027-r0tl01kq 336 2 as as IN cord-010027-r0tl01kq 336 3 part part NN cord-010027-r0tl01kq 336 4 of of IN cord-010027-r0tl01kq 336 5 a a DT cord-010027-r0tl01kq 336 6 matrix matrix NN cord-010027-r0tl01kq 336 7 designed design VBN cord-010027-r0tl01kq 336 8 to to TO cord-010027-r0tl01kq 336 9 reflect reflect VB cord-010027-r0tl01kq 336 10 clinically clinically RB cord-010027-r0tl01kq 336 11 relevant relevant JJ cord-010027-r0tl01kq 336 12 scenarios scenario NNS cord-010027-r0tl01kq 336 13 . . . cord-010027-r0tl01kq 337 1 RNA RNA NNP cord-010027-r0tl01kq 337 2 was be VBD cord-010027-r0tl01kq 337 3 extracted extract VBN cord-010027-r0tl01kq 337 4 and and CC cord-010027-r0tl01kq 337 5 interrogated interrogate VBN cord-010027-r0tl01kq 337 6 on on IN cord-010027-r0tl01kq 337 7 Affymetrix Affymetrix NNP cord-010027-r0tl01kq 337 8 Human Human NNP cord-010027-r0tl01kq 337 9 Gene Gene NNP cord-010027-r0tl01kq 337 10 arrays array NNS cord-010027-r0tl01kq 337 11 . . . cord-010027-r0tl01kq 338 1 Differential differential JJ cord-010027-r0tl01kq 338 2 gene gene NN cord-010027-r0tl01kq 338 3 expression expression NN cord-010027-r0tl01kq 338 4 was be VBD cord-010027-r0tl01kq 338 5 analysed analyse VBN cord-010027-r0tl01kq 338 6 for for IN cord-010027-r0tl01kq 338 7 cells cell NNS cord-010027-r0tl01kq 338 8 exposed expose VBN cord-010027-r0tl01kq 338 9 to to IN cord-010027-r0tl01kq 338 10 hypoxia hypoxia NN cord-010027-r0tl01kq 338 11 and/or and/or CC cord-010027-r0tl01kq 338 12 treated treat VBN cord-010027-r0tl01kq 338 13 with with IN cord-010027-r0tl01kq 338 14 cisplatin cisplatin NN cord-010027-r0tl01kq 338 15 . . . cord-010027-r0tl01kq 339 1 Potential potential JJ cord-010027-r0tl01kq 339 2 markers marker NNS cord-010027-r0tl01kq 339 3 of of IN cord-010027-r0tl01kq 339 4 chemoresistance chemoresistance NN cord-010027-r0tl01kq 339 5 were be VBD cord-010027-r0tl01kq 339 6 selected select VBN cord-010027-r0tl01kq 339 7 for for IN cord-010027-r0tl01kq 339 8 evaluation evaluation NN cord-010027-r0tl01kq 339 9 in in IN cord-010027-r0tl01kq 339 10 a a DT cord-010027-r0tl01kq 339 11 cohort cohort NN cord-010027-r0tl01kq 339 12 of of IN cord-010027-r0tl01kq 339 13 ovarian ovarian JJ cord-010027-r0tl01kq 339 14 tumour tumour NN cord-010027-r0tl01kq 339 15 samples sample NNS cord-010027-r0tl01kq 339 16 by by IN cord-010027-r0tl01kq 339 17 RT RT NNP cord-010027-r0tl01kq 339 18 - - HYPH cord-010027-r0tl01kq 339 19 PCR PCR NNP cord-010027-r0tl01kq 339 20 . . . cord-010027-r0tl01kq 340 1 Results result NNS cord-010027-r0tl01kq 340 2 : : : cord-010027-r0tl01kq 341 1 A a DT cord-010027-r0tl01kq 341 2 wide wide JJ cord-010027-r0tl01kq 341 3 range range NN cord-010027-r0tl01kq 341 4 of of IN cord-010027-r0tl01kq 341 5 genes gene NNS cord-010027-r0tl01kq 341 6 associated associate VBN cord-010027-r0tl01kq 341 7 with with IN cord-010027-r0tl01kq 341 8 chemoresistance chemoresistance NN cord-010027-r0tl01kq 341 9 were be VBD cord-010027-r0tl01kq 341 10 differentially differentially RB cord-010027-r0tl01kq 341 11 expressed express VBN cord-010027-r0tl01kq 341 12 in in IN cord-010027-r0tl01kq 341 13 cells cell NNS cord-010027-r0tl01kq 341 14 exposed expose VBN cord-010027-r0tl01kq 341 15 to to IN cord-010027-r0tl01kq 341 16 hypoxia hypoxia NN cord-010027-r0tl01kq 341 17 and/or and/or CC cord-010027-r0tl01kq 341 18 cisplatin cisplatin NN cord-010027-r0tl01kq 341 19 . . . cord-010027-r0tl01kq 342 1 Selected select VBN cord-010027-r0tl01kq 342 2 genes gene NNS cord-010027-r0tl01kq 342 3 [ [ -LRB- cord-010027-r0tl01kq 342 4 ANGPTL4 ANGPTL4 NNP cord-010027-r0tl01kq 342 5 , , , cord-010027-r0tl01kq 342 6 HER3 HER3 NNP cord-010027-r0tl01kq 342 7 and and CC cord-010027-r0tl01kq 342 8 HIF-1α HIF-1α NNP cord-010027-r0tl01kq 342 9 ] ] -RRB- cord-010027-r0tl01kq 342 10 were be VBD cord-010027-r0tl01kq 342 11 chosen choose VBN cord-010027-r0tl01kq 342 12 for for IN cord-010027-r0tl01kq 342 13 further further JJ cord-010027-r0tl01kq 342 14 validation validation NN cord-010027-r0tl01kq 342 15 in in IN cord-010027-r0tl01kq 342 16 a a DT cord-010027-r0tl01kq 342 17 cohort cohort NN cord-010027-r0tl01kq 342 18 of of IN cord-010027-r0tl01kq 342 19 ovarian ovarian JJ cord-010027-r0tl01kq 342 20 tumour tumour NN cord-010027-r0tl01kq 342 21 samples sample NNS cord-010027-r0tl01kq 342 22 , , , cord-010027-r0tl01kq 342 23 n=35 n=35 PRP cord-010027-r0tl01kq 342 24 . . . cord-010027-r0tl01kq 343 1 High high JJ cord-010027-r0tl01kq 343 2 expression expression NN cord-010027-r0tl01kq 343 3 of of IN cord-010027-r0tl01kq 343 4 ANGPTL4 ANGPTL4 NNP cord-010027-r0tl01kq 343 5 trended trend VBN cord-010027-r0tl01kq 343 6 towards towards IN cord-010027-r0tl01kq 343 7 reduced reduce VBN cord-010027-r0tl01kq 343 8 progression progression NN cord-010027-r0tl01kq 343 9 - - HYPH cord-010027-r0tl01kq 343 10 free free JJ cord-010027-r0tl01kq 343 11 and and CC cord-010027-r0tl01kq 343 12 overall overall JJ cord-010027-r0tl01kq 343 13 survival survival NN cord-010027-r0tl01kq 343 14 . . . cord-010027-r0tl01kq 344 1 High high JJ cord-010027-r0tl01kq 344 2 expression expression NN cord-010027-r0tl01kq 344 3 of of IN cord-010027-r0tl01kq 344 4 HER3 HER3 NNP cord-010027-r0tl01kq 344 5 trended trend VBD cord-010027-r0tl01kq 344 6 to to IN cord-010027-r0tl01kq 344 7 increased increase VBN cord-010027-r0tl01kq 344 8 progression progression NN cord-010027-r0tl01kq 344 9 - - HYPH cord-010027-r0tl01kq 344 10 free free JJ cord-010027-r0tl01kq 344 11 but but CC cord-010027-r0tl01kq 344 12 reduced reduced JJ cord-010027-r0tl01kq 344 13 overall overall JJ cord-010027-r0tl01kq 344 14 survival survival NN cord-010027-r0tl01kq 344 15 , , , cord-010027-r0tl01kq 344 16 while while IN cord-010027-r0tl01kq 344 17 high high JJ cord-010027-r0tl01kq 344 18 expression expression NN cord-010027-r0tl01kq 344 19 of of IN cord-010027-r0tl01kq 344 20 HIF-1α HIF-1α NNP cord-010027-r0tl01kq 344 21 trended trend VBD cord-010027-r0tl01kq 344 22 towards towards IN cord-010027-r0tl01kq 344 23 reduced reduce VBN cord-010027-r0tl01kq 344 24 progression progression NN cord-010027-r0tl01kq 344 25 - - HYPH cord-010027-r0tl01kq 344 26 free free JJ cord-010027-r0tl01kq 344 27 and and CC cord-010027-r0tl01kq 344 28 increased increase VBN cord-010027-r0tl01kq 344 29 overall overall JJ cord-010027-r0tl01kq 344 30 survival survival NN cord-010027-r0tl01kq 344 31 . . . cord-010027-r0tl01kq 345 1 Conclusion conclusion NN cord-010027-r0tl01kq 345 2 : : : cord-010027-r0tl01kq 346 1 This this DT cord-010027-r0tl01kq 346 2 study study NN cord-010027-r0tl01kq 346 3 has have VBZ cord-010027-r0tl01kq 346 4 further further RB cord-010027-r0tl01kq 346 5 characterized characterize VBN cord-010027-r0tl01kq 346 6 the the DT cord-010027-r0tl01kq 346 7 relationship relationship NN cord-010027-r0tl01kq 346 8 between between IN cord-010027-r0tl01kq 346 9 hypoxia hypoxia NN cord-010027-r0tl01kq 346 10 and and CC cord-010027-r0tl01kq 346 11 chemoresistance chemoresistance NN cord-010027-r0tl01kq 346 12 in in IN cord-010027-r0tl01kq 346 13 an an DT cord-010027-r0tl01kq 346 14 ovarian ovarian JJ cord-010027-r0tl01kq 346 15 cancer cancer NN cord-010027-r0tl01kq 346 16 model model NN cord-010027-r0tl01kq 346 17 . . . cord-010027-r0tl01kq 347 1 We -PRON- PRP cord-010027-r0tl01kq 347 2 have have VBP cord-010027-r0tl01kq 347 3 also also RB cord-010027-r0tl01kq 347 4 identified identify VBN cord-010027-r0tl01kq 347 5 many many JJ cord-010027-r0tl01kq 347 6 potential potential JJ cord-010027-r0tl01kq 347 7 biomarkers biomarker NNS cord-010027-r0tl01kq 347 8 of of IN cord-010027-r0tl01kq 347 9 hypoxia hypoxia NN cord-010027-r0tl01kq 347 10 and and CC cord-010027-r0tl01kq 347 11 platinum platinum NN cord-010027-r0tl01kq 347 12 resistance resistance NN cord-010027-r0tl01kq 347 13 and and CC cord-010027-r0tl01kq 347 14 provide provide VB cord-010027-r0tl01kq 347 15 initial initial JJ cord-010027-r0tl01kq 347 16 validation validation NN cord-010027-r0tl01kq 347 17 of of IN cord-010027-r0tl01kq 347 18 a a DT cord-010027-r0tl01kq 347 19 subset subset NN cord-010027-r0tl01kq 347 20 of of IN cord-010027-r0tl01kq 347 21 these these DT cord-010027-r0tl01kq 347 22 markers marker NNS cord-010027-r0tl01kq 347 23 in in IN cord-010027-r0tl01kq 347 24 ovarian ovarian JJ cord-010027-r0tl01kq 347 25 cancer cancer NN cord-010027-r0tl01kq 347 26 tissues tissue NNS cord-010027-r0tl01kq 347 27 . . . cord-010027-r0tl01kq 348 1 Methods method NNS cord-010027-r0tl01kq 348 2 : : : cord-010027-r0tl01kq 348 3 Analysis Analysis NNP cord-010027-r0tl01kq 348 4 of of IN cord-010027-r0tl01kq 348 5 Affymetrix Affymetrix NNP cord-010027-r0tl01kq 348 6 ™ ™ HYPH cord-010027-r0tl01kq 348 7 Human Human NNP cord-010027-r0tl01kq 348 8 Exon Exon NNP cord-010027-r0tl01kq 348 9 1.0ST 1.0st CD cord-010027-r0tl01kq 348 10 microarray microarray NN cord-010027-r0tl01kq 348 11 data datum NNS cord-010027-r0tl01kq 348 12 revealed reveal VBD cord-010027-r0tl01kq 348 13 differentially differentially RB cord-010027-r0tl01kq 348 14 expressed express VBN cord-010027-r0tl01kq 348 15 genes gene NNS cord-010027-r0tl01kq 348 16 ( ( -LRB- cord-010027-r0tl01kq 348 17 DEGs DEGs NNP cord-010027-r0tl01kq 348 18 ) ) -RRB- cord-010027-r0tl01kq 348 19 between between IN cord-010027-r0tl01kq 348 20 a a DT cord-010027-r0tl01kq 348 21 BC BC NNP cord-010027-r0tl01kq 348 22 group group NN cord-010027-r0tl01kq 348 23 and and CC cord-010027-r0tl01kq 348 24 a a DT cord-010027-r0tl01kq 348 25 control control NN cord-010027-r0tl01kq 348 26 non non JJ cord-010027-r0tl01kq 348 27 - - JJ cord-010027-r0tl01kq 348 28 BC BC NNP cord-010027-r0tl01kq 348 29 group group NN cord-010027-r0tl01kq 348 30 . . . cord-010027-r0tl01kq 349 1 Ingenuity Ingenuity NNP cord-010027-r0tl01kq 349 2 Pathway Pathway NNP cord-010027-r0tl01kq 349 3 Analysis Analysis NNP cord-010027-r0tl01kq 349 4 ( ( -LRB- cord-010027-r0tl01kq 349 5 IPA IPA NNP cord-010027-r0tl01kq 349 6 ; ; , cord-010027-r0tl01kq 349 7 bioinformatics bioinformatics NN cord-010027-r0tl01kq 349 8 software software NN cord-010027-r0tl01kq 349 9 ) ) -RRB- cord-010027-r0tl01kq 349 10 was be VBD cord-010027-r0tl01kq 349 11 used use VBN cord-010027-r0tl01kq 349 12 to to TO cord-010027-r0tl01kq 349 13 identify identify VB cord-010027-r0tl01kq 349 14 networks network NNS cord-010027-r0tl01kq 349 15 of of IN cord-010027-r0tl01kq 349 16 the the DT cord-010027-r0tl01kq 349 17 DEGs deg NNS cord-010027-r0tl01kq 349 18 . . . cord-010027-r0tl01kq 350 1 The the DT cord-010027-r0tl01kq 350 2 expression expression NN cord-010027-r0tl01kq 350 3 of of IN cord-010027-r0tl01kq 350 4 a a DT cord-010027-r0tl01kq 350 5 micro micro JJ cord-010027-r0tl01kq 350 6 - - NN cord-010027-r0tl01kq 350 7 network network NN cord-010027-r0tl01kq 350 8 was be VBD cord-010027-r0tl01kq 350 9 validated validate VBN cord-010027-r0tl01kq 350 10 using use VBG cord-010027-r0tl01kq 350 11 immunohistochemistry immunohistochemistry NN cord-010027-r0tl01kq 350 12 . . . cord-010027-r0tl01kq 351 1 Double double JJ cord-010027-r0tl01kq 351 2 immunofluorescence immunofluorescence NN cord-010027-r0tl01kq 351 3 was be VBD cord-010027-r0tl01kq 351 4 undertaken undertake VBN cord-010027-r0tl01kq 351 5 to to TO cord-010027-r0tl01kq 351 6 identify identify VB cord-010027-r0tl01kq 351 7 the the DT cord-010027-r0tl01kq 351 8 lineage lineage NN cord-010027-r0tl01kq 351 9 of of IN cord-010027-r0tl01kq 351 10 cells cell NNS cord-010027-r0tl01kq 351 11 expressing express VBG cord-010027-r0tl01kq 351 12 components component NNS cord-010027-r0tl01kq 351 13 of of IN cord-010027-r0tl01kq 351 14 the the DT cord-010027-r0tl01kq 351 15 network network NN cord-010027-r0tl01kq 351 16 . . . cord-010027-r0tl01kq 352 1 Results result NNS cord-010027-r0tl01kq 352 2 : : : cord-010027-r0tl01kq 353 1 We -PRON- PRP cord-010027-r0tl01kq 353 2 identified identify VBD cord-010027-r0tl01kq 353 3 a a DT cord-010027-r0tl01kq 353 4 network network NN cord-010027-r0tl01kq 353 5 of of IN cord-010027-r0tl01kq 353 6 interacting interact VBG cord-010027-r0tl01kq 353 7 genes gene NNS cord-010027-r0tl01kq 353 8 that that WDT cord-010027-r0tl01kq 353 9 were be VBD cord-010027-r0tl01kq 353 10 upregulated upregulate VBN cord-010027-r0tl01kq 353 11 in in IN cord-010027-r0tl01kq 353 12 FCDIIb FCDIIb NNS cord-010027-r0tl01kq 353 13 compared compare VBN cord-010027-r0tl01kq 353 14 to to IN cord-010027-r0tl01kq 353 15 normally normally RB cord-010027-r0tl01kq 353 16 formed form VBN cord-010027-r0tl01kq 353 17 cortex cortex NN cord-010027-r0tl01kq 353 18 or or CC cord-010027-r0tl01kq 353 19 FCD FCD NNP cord-010027-r0tl01kq 353 20 without without IN cord-010027-r0tl01kq 353 21 balloon balloon NN cord-010027-r0tl01kq 353 22 cells cell NNS cord-010027-r0tl01kq 353 23 ( ( -LRB- cord-010027-r0tl01kq 353 24 FCDIIa FCDIIa NNS cord-010027-r0tl01kq 353 25 ) ) -RRB- cord-010027-r0tl01kq 353 26 . . . cord-010027-r0tl01kq 354 1 Some some DT cord-010027-r0tl01kq 354 2 components component NNS cord-010027-r0tl01kq 354 3 of of IN cord-010027-r0tl01kq 354 4 this this DT cord-010027-r0tl01kq 354 5 network network NN cord-010027-r0tl01kq 354 6 were be VBD cord-010027-r0tl01kq 354 7 expressed express VBN cord-010027-r0tl01kq 354 8 in in IN cord-010027-r0tl01kq 354 9 BCs BCs NNP cord-010027-r0tl01kq 354 10 but but CC cord-010027-r0tl01kq 354 11 others other NNS cord-010027-r0tl01kq 354 12 were be VBD cord-010027-r0tl01kq 354 13 expressed express VBN cord-010027-r0tl01kq 354 14 in in IN cord-010027-r0tl01kq 354 15 novel novel JJ cord-010027-r0tl01kq 354 16 cell cell NN cord-010027-r0tl01kq 354 17 populations population NNS cord-010027-r0tl01kq 354 18 . . . cord-010027-r0tl01kq 355 1 Double double JJ cord-010027-r0tl01kq 355 2 immunofluorescence immunofluorescence NN cord-010027-r0tl01kq 355 3 identified identify VBD cord-010027-r0tl01kq 355 4 a a DT cord-010027-r0tl01kq 355 5 cell cell NN cord-010027-r0tl01kq 355 6 with with IN cord-010027-r0tl01kq 355 7 the the DT cord-010027-r0tl01kq 355 8 phenotype phenotype NN cord-010027-r0tl01kq 355 9 of of IN cord-010027-r0tl01kq 355 10 a a DT cord-010027-r0tl01kq 355 11 glial glial JJ cord-010027-r0tl01kq 355 12 progenitor progenitor NN cord-010027-r0tl01kq 355 13 that that WDT cord-010027-r0tl01kq 355 14 was be VBD cord-010027-r0tl01kq 355 15 only only RB cord-010027-r0tl01kq 355 16 present present JJ cord-010027-r0tl01kq 355 17 in in IN cord-010027-r0tl01kq 355 18 FCDIIb FCDIIb NNS cord-010027-r0tl01kq 355 19 but but CC cord-010027-r0tl01kq 355 20 not not RB cord-010027-r0tl01kq 355 21 in in IN cord-010027-r0tl01kq 355 22 normally normally RB cord-010027-r0tl01kq 355 23 formed form VBN cord-010027-r0tl01kq 355 24 cortex cortex NN cord-010027-r0tl01kq 355 25 . . . cord-010027-r0tl01kq 356 1 Conclusions conclusion NNS cord-010027-r0tl01kq 356 2 : : : cord-010027-r0tl01kq 357 1 We -PRON- PRP cord-010027-r0tl01kq 357 2 have have VBP cord-010027-r0tl01kq 357 3 identified identify VBN cord-010027-r0tl01kq 357 4 a a DT cord-010027-r0tl01kq 357 5 novel novel JJ cord-010027-r0tl01kq 357 6 population population NN cord-010027-r0tl01kq 357 7 of of IN cord-010027-r0tl01kq 357 8 glial glial JJ cord-010027-r0tl01kq 357 9 progenitors progenitor NNS cord-010027-r0tl01kq 357 10 found find VBN cord-010027-r0tl01kq 357 11 frequently frequently RB cord-010027-r0tl01kq 357 12 adjacent adjacent JJ cord-010027-r0tl01kq 357 13 to to IN cord-010027-r0tl01kq 357 14 BCs BCs NNP cord-010027-r0tl01kq 357 15 in in IN cord-010027-r0tl01kq 357 16 FCDIIb FCDIIb NNP cord-010027-r0tl01kq 357 17 . . . cord-010027-r0tl01kq 358 1 Paracrine Paracrine NNP cord-010027-r0tl01kq 358 2 signaling signal VBG cord-010027-r0tl01kq 358 3 between between IN cord-010027-r0tl01kq 358 4 BCs BCs NNP cord-010027-r0tl01kq 358 5 and and CC cord-010027-r0tl01kq 358 6 the the DT cord-010027-r0tl01kq 358 7 novel novel JJ cord-010027-r0tl01kq 358 8 CHI3L1 chi3l1 CC cord-010027-r0tl01kq 358 9 positive positive JJ cord-010027-r0tl01kq 358 10 cells cell NNS cord-010027-r0tl01kq 358 11 is be VBZ cord-010027-r0tl01kq 358 12 likely likely JJ cord-010027-r0tl01kq 358 13 to to TO cord-010027-r0tl01kq 358 14 be be VB cord-010027-r0tl01kq 358 15 involved involve VBN cord-010027-r0tl01kq 358 16 in in IN cord-010027-r0tl01kq 358 17 the the DT cord-010027-r0tl01kq 358 18 pathogenesis pathogenesis NN cord-010027-r0tl01kq 358 19 in in IN cord-010027-r0tl01kq 358 20 FCDIIb FCDIIb NNS cord-010027-r0tl01kq 358 21 . . . cord-010027-r0tl01kq 359 1 Further further JJ cord-010027-r0tl01kq 359 2 investigations investigation NNS cord-010027-r0tl01kq 359 3 into into IN cord-010027-r0tl01kq 359 4 the the DT cord-010027-r0tl01kq 359 5 role role NN cord-010027-r0tl01kq 359 6 of of IN cord-010027-r0tl01kq 359 7 these these DT cord-010027-r0tl01kq 359 8 cells cell NNS cord-010027-r0tl01kq 359 9 would would MD cord-010027-r0tl01kq 359 10 give give VB cord-010027-r0tl01kq 359 11 us -PRON- PRP cord-010027-r0tl01kq 359 12 a a DT cord-010027-r0tl01kq 359 13 better well JJR cord-010027-r0tl01kq 359 14 understanding understanding NN cord-010027-r0tl01kq 359 15 of of IN cord-010027-r0tl01kq 359 16 the the DT cord-010027-r0tl01kq 359 17 molecular molecular JJ cord-010027-r0tl01kq 359 18 abnormalities abnormality NNS cord-010027-r0tl01kq 359 19 underlying underlie VBG cord-010027-r0tl01kq 359 20 FCD FCD NNP cord-010027-r0tl01kq 359 21 and and CC cord-010027-r0tl01kq 359 22 possibly possibly RB cord-010027-r0tl01kq 359 23 provide provide VB cord-010027-r0tl01kq 359 24 novel novel JJ cord-010027-r0tl01kq 359 25 therapeutic therapeutic JJ cord-010027-r0tl01kq 359 26 targets target NNS cord-010027-r0tl01kq 359 27 . . . cord-010027-r0tl01kq 360 1 Excellent excellent JJ cord-010027-r0tl01kq 360 2 anatomical anatomical JJ cord-010027-r0tl01kq 360 3 knowledge knowledge NN cord-010027-r0tl01kq 360 4 of of IN cord-010027-r0tl01kq 360 5 the the DT cord-010027-r0tl01kq 360 6 anal anal JJ cord-010027-r0tl01kq 360 7 sphincter sphincter NN cord-010027-r0tl01kq 360 8 complex complex NN cord-010027-r0tl01kq 360 9 ( ( -LRB- cord-010027-r0tl01kq 360 10 ASC ASC NNP cord-010027-r0tl01kq 360 11 ) ) -RRB- cord-010027-r0tl01kq 360 12 is be VBZ cord-010027-r0tl01kq 360 13 essential essential JJ cord-010027-r0tl01kq 360 14 for for IN cord-010027-r0tl01kq 360 15 the the DT cord-010027-r0tl01kq 360 16 treatment treatment NN cord-010027-r0tl01kq 360 17 and and CC cord-010027-r0tl01kq 360 18 understanding understanding NN cord-010027-r0tl01kq 360 19 of of IN cord-010027-r0tl01kq 360 20 low low JJ cord-010027-r0tl01kq 360 21 rectal rectal JJ cord-010027-r0tl01kq 360 22 and and CC cord-010027-r0tl01kq 360 23 anal anal JJ cord-010027-r0tl01kq 360 24 pathology pathology NN cord-010027-r0tl01kq 360 25 . . . cord-010027-r0tl01kq 361 1 Some some DT cord-010027-r0tl01kq 361 2 of of IN cord-010027-r0tl01kq 361 3 the the DT cord-010027-r0tl01kq 361 4 current current JJ cord-010027-r0tl01kq 361 5 descriptions description NNS cord-010027-r0tl01kq 361 6 of of IN cord-010027-r0tl01kq 361 7 the the DT cord-010027-r0tl01kq 361 8 ASC ASC NNP cord-010027-r0tl01kq 361 9 are be VBP cord-010027-r0tl01kq 361 10 contradictory contradictory JJ cord-010027-r0tl01kq 361 11 . . . cord-010027-r0tl01kq 362 1 In in IN cord-010027-r0tl01kq 362 2 this this DT cord-010027-r0tl01kq 362 3 study study NN cord-010027-r0tl01kq 362 4 , , , cord-010027-r0tl01kq 362 5 the the DT cord-010027-r0tl01kq 362 6 three three CD cord-010027-r0tl01kq 362 7 - - HYPH cord-010027-r0tl01kq 362 8 dimensional dimensional JJ cord-010027-r0tl01kq 362 9 ( ( -LRB- cord-010027-r0tl01kq 362 10 3D 3D NNP cord-010027-r0tl01kq 362 11 ) ) -RRB- cord-010027-r0tl01kq 362 12 anatomy anatomy NN cord-010027-r0tl01kq 362 13 of of IN cord-010027-r0tl01kq 362 14 the the DT cord-010027-r0tl01kq 362 15 ASC ASC NNP cord-010027-r0tl01kq 362 16 is be VBZ cord-010027-r0tl01kq 362 17 described describe VBN cord-010027-r0tl01kq 362 18 with with IN cord-010027-r0tl01kq 362 19 relevance relevance NN cord-010027-r0tl01kq 362 20 to to IN cord-010027-r0tl01kq 362 21 low low JJ cord-010027-r0tl01kq 362 22 rectal rectal NN cord-010027-r0tl01kq 362 23 and and CC cord-010027-r0tl01kq 362 24 anal anal JJ cord-010027-r0tl01kq 362 25 surgical surgical JJ cord-010027-r0tl01kq 362 26 pathology pathology NN cord-010027-r0tl01kq 362 27 . . . cord-010027-r0tl01kq 363 1 Six six CD cord-010027-r0tl01kq 363 2 human human JJ cord-010027-r0tl01kq 363 3 adult adult NN cord-010027-r0tl01kq 363 4 cadaveric cadaveric JJ cord-010027-r0tl01kq 363 5 specimens specimen NNS cord-010027-r0tl01kq 363 6 ( ( -LRB- cord-010027-r0tl01kq 363 7 three three CD cord-010027-r0tl01kq 363 8 males male NNS cord-010027-r0tl01kq 363 9 , , , cord-010027-r0tl01kq 363 10 three three CD cord-010027-r0tl01kq 363 11 females female NNS cord-010027-r0tl01kq 363 12 ) ) -RRB- cord-010027-r0tl01kq 363 13 were be VBD cord-010027-r0tl01kq 363 14 obtained obtain VBN cord-010027-r0tl01kq 363 15 from from IN cord-010027-r0tl01kq 363 16 the the DT cord-010027-r0tl01kq 363 17 Leeds Leeds NNP cord-010027-r0tl01kq 363 18 GIFT GIFT NNP cord-010027-r0tl01kq 363 19 Research Research NNP cord-010027-r0tl01kq 363 20 Tissue Tissue NNP cord-010027-r0tl01kq 363 21 Programme Programme NNP cord-010027-r0tl01kq 363 22 . . . cord-010027-r0tl01kq 364 1 Paraffin paraffin NN cord-010027-r0tl01kq 364 2 embedded embed VBN cord-010027-r0tl01kq 364 3 mega mega NNS cord-010027-r0tl01kq 364 4 - - NNS cord-010027-r0tl01kq 364 5 blocks block NNS cord-010027-r0tl01kq 364 6 containing contain VBG cord-010027-r0tl01kq 364 7 the the DT cord-010027-r0tl01kq 364 8 ASC ASC NNP cord-010027-r0tl01kq 364 9 were be VBD cord-010027-r0tl01kq 364 10 serially serially RB cord-010027-r0tl01kq 364 11 sectioned section VBN cord-010027-r0tl01kq 364 12 at at IN cord-010027-r0tl01kq 364 13 250 250 CD cord-010027-r0tl01kq 364 14 µm µm CD cord-010027-r0tl01kq 364 15 intervals interval NNS cord-010027-r0tl01kq 364 16 . . . cord-010027-r0tl01kq 365 1 Sections section NNS cord-010027-r0tl01kq 365 2 were be VBD cord-010027-r0tl01kq 365 3 stained stain VBN cord-010027-r0tl01kq 365 4 with with IN cord-010027-r0tl01kq 365 5 haematoxylin haematoxylin NNP cord-010027-r0tl01kq 365 6 & & CC cord-010027-r0tl01kq 365 7 eosin eosin NNP cord-010027-r0tl01kq 365 8 , , , cord-010027-r0tl01kq 365 9 Masson Masson NNP cord-010027-r0tl01kq 365 10 's 's POS cord-010027-r0tl01kq 365 11 trichrome trichrome JJ cord-010027-r0tl01kq 365 12 and and CC cord-010027-r0tl01kq 365 13 Millers Millers NNP cord-010027-r0tl01kq 365 14 ' ' POS cord-010027-r0tl01kq 365 15 elastin elastin NN cord-010027-r0tl01kq 365 16 , , , cord-010027-r0tl01kq 365 17 from from IN cord-010027-r0tl01kq 365 18 which which WDT cord-010027-r0tl01kq 365 19 3D 3d JJ cord-010027-r0tl01kq 365 20 reconstructions reconstruction NNS cord-010027-r0tl01kq 365 21 were be VBD cord-010027-r0tl01kq 365 22 developed develop VBN cord-010027-r0tl01kq 365 23 . . . cord-010027-r0tl01kq 366 1 The the DT cord-010027-r0tl01kq 366 2 ASC ASC NNP cord-010027-r0tl01kq 366 3 is be VBZ cord-010027-r0tl01kq 366 4 a a DT cord-010027-r0tl01kq 366 5 complex complex JJ cord-010027-r0tl01kq 366 6 structure structure NN cord-010027-r0tl01kq 366 7 , , , cord-010027-r0tl01kq 366 8 varying vary VBG cord-010027-r0tl01kq 366 9 between between IN cord-010027-r0tl01kq 366 10 individuals individual NNS cord-010027-r0tl01kq 366 11 in in IN cord-010027-r0tl01kq 366 12 the the DT cord-010027-r0tl01kq 366 13 size size NN cord-010027-r0tl01kq 366 14 and and CC cord-010027-r0tl01kq 366 15 distribution distribution NN cord-010027-r0tl01kq 366 16 of of IN cord-010027-r0tl01kq 366 17 its -PRON- PRP$ cord-010027-r0tl01kq 366 18 layers layer NNS cord-010027-r0tl01kq 366 19 with with IN cord-010027-r0tl01kq 366 20 intermingling intermingle VBG cord-010027-r0tl01kq 366 21 of of IN cord-010027-r0tl01kq 366 22 fibres fibre NNS cord-010027-r0tl01kq 366 23 and and CC cord-010027-r0tl01kq 366 24 inconsistency inconsistency NN cord-010027-r0tl01kq 366 25 of of IN cord-010027-r0tl01kq 366 26 the the DT cord-010027-r0tl01kq 366 27 longitudinal longitudinal JJ cord-010027-r0tl01kq 366 28 smooth smooth JJ cord-010027-r0tl01kq 366 29 muscle muscle NN cord-010027-r0tl01kq 366 30 affecting affect VBG cord-010027-r0tl01kq 366 31 the the DT cord-010027-r0tl01kq 366 32 creation creation NN cord-010027-r0tl01kq 366 33 of of IN cord-010027-r0tl01kq 366 34 the the DT cord-010027-r0tl01kq 366 35 surgical surgical JJ cord-010027-r0tl01kq 366 36 intersphincteric intersphincteric JJ cord-010027-r0tl01kq 366 37 plane plane NN cord-010027-r0tl01kq 366 38 . . . cord-010027-r0tl01kq 367 1 Longitudinal longitudinal JJ cord-010027-r0tl01kq 367 2 fibres fibre NNS cord-010027-r0tl01kq 367 3 penetrate penetrate VBP cord-010027-r0tl01kq 367 4 the the DT cord-010027-r0tl01kq 367 5 internal internal JJ cord-010027-r0tl01kq 367 6 and and CC cord-010027-r0tl01kq 367 7 external external JJ cord-010027-r0tl01kq 367 8 anal anal JJ cord-010027-r0tl01kq 367 9 sphincter sphincter NN cord-010027-r0tl01kq 367 10 to to TO cord-010027-r0tl01kq 367 11 anchor anchor VB cord-010027-r0tl01kq 367 12 in in IN cord-010027-r0tl01kq 367 13 the the DT cord-010027-r0tl01kq 367 14 submucosa submucosa NNP cord-010027-r0tl01kq 367 15 and and CC cord-010027-r0tl01kq 367 16 ischiorectal ischiorectal JJ cord-010027-r0tl01kq 367 17 fossa fossa NN cord-010027-r0tl01kq 367 18 . . . cord-010027-r0tl01kq 368 1 Striated striated JJ cord-010027-r0tl01kq 368 2 muscle muscle NN cord-010027-r0tl01kq 368 3 fibres fibre NNS cord-010027-r0tl01kq 368 4 from from IN cord-010027-r0tl01kq 368 5 the the DT cord-010027-r0tl01kq 368 6 external external JJ cord-010027-r0tl01kq 368 7 sphincter sphincter NN cord-010027-r0tl01kq 368 8 were be VBD cord-010027-r0tl01kq 368 9 identified identify VBN cord-010027-r0tl01kq 368 10 in in IN cord-010027-r0tl01kq 368 11 the the DT cord-010027-r0tl01kq 368 12 submucosa submucosa NNP cord-010027-r0tl01kq 368 13 in in IN cord-010027-r0tl01kq 368 14 four four CD cord-010027-r0tl01kq 368 15 of of IN cord-010027-r0tl01kq 368 16 six six CD cord-010027-r0tl01kq 368 17 specimens specimen NNS cord-010027-r0tl01kq 368 18 . . . cord-010027-r0tl01kq 369 1 The the DT cord-010027-r0tl01kq 369 2 ASC ASC NNP cord-010027-r0tl01kq 369 3 is be VBZ cord-010027-r0tl01kq 369 4 highly highly RB cord-010027-r0tl01kq 369 5 complex complex JJ cord-010027-r0tl01kq 369 6 due due IN cord-010027-r0tl01kq 369 7 to to IN cord-010027-r0tl01kq 369 8 the the DT cord-010027-r0tl01kq 369 9 degree degree NN cord-010027-r0tl01kq 369 10 of of IN cord-010027-r0tl01kq 369 11 variation variation NN cord-010027-r0tl01kq 369 12 in in IN cord-010027-r0tl01kq 369 13 its -PRON- PRP$ cord-010027-r0tl01kq 369 14 structure structure NN cord-010027-r0tl01kq 369 15 and and CC cord-010027-r0tl01kq 369 16 intermingling intermingling NN cord-010027-r0tl01kq 369 17 of of IN cord-010027-r0tl01kq 369 18 smooth smooth JJ cord-010027-r0tl01kq 369 19 and and CC cord-010027-r0tl01kq 369 20 striated striated JJ cord-010027-r0tl01kq 369 21 muscle muscle NN cord-010027-r0tl01kq 369 22 fibres fibre NNS cord-010027-r0tl01kq 369 23 and and CC cord-010027-r0tl01kq 369 24 their -PRON- PRP$ cord-010027-r0tl01kq 369 25 penetration penetration NN cord-010027-r0tl01kq 369 26 of of IN cord-010027-r0tl01kq 369 27 major major JJ cord-010027-r0tl01kq 369 28 structures structure NNS cord-010027-r0tl01kq 369 29 . . . cord-010027-r0tl01kq 370 1 This this DT cord-010027-r0tl01kq 370 2 creates create VBZ cord-010027-r0tl01kq 370 3 potential potential JJ cord-010027-r0tl01kq 370 4 tissue tissue NN cord-010027-r0tl01kq 370 5 planes plane NNS cord-010027-r0tl01kq 370 6 for for IN cord-010027-r0tl01kq 370 7 the the DT cord-010027-r0tl01kq 370 8 spread spread NN cord-010027-r0tl01kq 370 9 of of IN cord-010027-r0tl01kq 370 10 infection infection NN cord-010027-r0tl01kq 370 11 , , , cord-010027-r0tl01kq 370 12 fistula fistula NN cord-010027-r0tl01kq 370 13 extension extension NN cord-010027-r0tl01kq 370 14 and and CC cord-010027-r0tl01kq 370 15 tumour tumour NN cord-010027-r0tl01kq 370 16 spread spread NN cord-010027-r0tl01kq 370 17 . . . cord-010027-r0tl01kq 371 1 The the DT cord-010027-r0tl01kq 371 2 complex complex JJ cord-010027-r0tl01kq 371 3 anatomy anatomy NN cord-010027-r0tl01kq 371 4 of of IN cord-010027-r0tl01kq 371 5 the the DT cord-010027-r0tl01kq 371 6 ASC ASC NNP cord-010027-r0tl01kq 371 7 also also RB cord-010027-r0tl01kq 371 8 impacts impact VBZ cord-010027-r0tl01kq 371 9 on on IN cord-010027-r0tl01kq 371 10 the the DT cord-010027-r0tl01kq 371 11 staging staging NN cord-010027-r0tl01kq 371 12 of of IN cord-010027-r0tl01kq 371 13 low low JJ cord-010027-r0tl01kq 371 14 rectal rectal JJ cord-010027-r0tl01kq 371 15 cancers cancer NNS cord-010027-r0tl01kq 371 16 in in IN cord-010027-r0tl01kq 371 17 this this DT cord-010027-r0tl01kq 371 18 region region NN cord-010027-r0tl01kq 371 19 , , , cord-010027-r0tl01kq 371 20 which which WDT cord-010027-r0tl01kq 371 21 requires require VBZ cord-010027-r0tl01kq 371 22 further further JJ cord-010027-r0tl01kq 371 23 investigation investigation NN cord-010027-r0tl01kq 371 24 . . . cord-010027-r0tl01kq 372 1 P p NN cord-010027-r0tl01kq 372 2 H H NNP cord-010027-r0tl01kq 372 3 Thorpe Thorpe NNP cord-010027-r0tl01kq 372 4 ; ; : cord-010027-r0tl01kq 372 5 A a DT cord-010027-r0tl01kq 372 6 Asiri Asiri NNP cord-010027-r0tl01kq 372 7 ; ; : cord-010027-r0tl01kq 372 8 M M NNP cord-010027-r0tl01kq 372 9 Akhlaq Akhlaq NNP cord-010027-r0tl01kq 372 10 ; ; : cord-010027-r0tl01kq 372 11 D D NNP cord-010027-r0tl01kq 372 12 Jackson Jackson NNP cord-010027-r0tl01kq 373 1 ; ; : cord-010027-r0tl01kq 373 2 M M NNP cord-010027-r0tl01kq 373 3 Ilyas Ilyas NNP cord-010027-r0tl01kq 373 4 Cten Cten NNP cord-010027-r0tl01kq 373 5 is be VBZ cord-010027-r0tl01kq 373 6 upregulated upregulate VBN cord-010027-r0tl01kq 373 7 in in IN cord-010027-r0tl01kq 373 8 a a DT cord-010027-r0tl01kq 373 9 number number NN cord-010027-r0tl01kq 373 10 of of IN cord-010027-r0tl01kq 373 11 tumour tumour NN cord-010027-r0tl01kq 373 12 types type NNS cord-010027-r0tl01kq 373 13 and and CC cord-010027-r0tl01kq 373 14 in in IN cord-010027-r0tl01kq 373 15 colorectal colorectal JJ cord-010027-r0tl01kq 373 16 cancer cancer NN cord-010027-r0tl01kq 373 17 expression expression NN cord-010027-r0tl01kq 373 18 is be VBZ cord-010027-r0tl01kq 373 19 associated associate VBN cord-010027-r0tl01kq 373 20 with with IN cord-010027-r0tl01kq 373 21 advanced advanced JJ cord-010027-r0tl01kq 373 22 Dukes Dukes NNP cord-010027-r0tl01kq 373 23 stage stage NN cord-010027-r0tl01kq 373 24 , , , cord-010027-r0tl01kq 373 25 poor poor JJ cord-010027-r0tl01kq 373 26 prognosis prognosis NN cord-010027-r0tl01kq 373 27 and and CC cord-010027-r0tl01kq 373 28 distant distant JJ cord-010027-r0tl01kq 373 29 metastasis metastasis NN cord-010027-r0tl01kq 373 30 . . . cord-010027-r0tl01kq 374 1 Cten Cten NNP cord-010027-r0tl01kq 374 2 is be VBZ cord-010027-r0tl01kq 374 3 localised localise VBN cord-010027-r0tl01kq 374 4 at at IN cord-010027-r0tl01kq 374 5 focal focal JJ cord-010027-r0tl01kq 374 6 adhesions adhesion NNS cord-010027-r0tl01kq 374 7 and and CC cord-010027-r0tl01kq 374 8 regulates regulate VBZ cord-010027-r0tl01kq 374 9 cell cell NN cord-010027-r0tl01kq 374 10 motility motility NN cord-010027-r0tl01kq 374 11 but but CC cord-010027-r0tl01kq 374 12 knowledge knowledge NN cord-010027-r0tl01kq 374 13 of of IN cord-010027-r0tl01kq 374 14 underlying underlie VBG cord-010027-r0tl01kq 374 15 signalling signalling NN cord-010027-r0tl01kq 374 16 mechanisms mechanism NNS cord-010027-r0tl01kq 374 17 is be VBZ cord-010027-r0tl01kq 374 18 sparse sparse JJ cord-010027-r0tl01kq 374 19 . . . cord-010027-r0tl01kq 375 1 Epithelial epithelial JJ cord-010027-r0tl01kq 375 2 to to IN cord-010027-r0tl01kq 375 3 mesenchymal mesenchymal JJ cord-010027-r0tl01kq 375 4 transition transition NN cord-010027-r0tl01kq 375 5 ( ( -LRB- cord-010027-r0tl01kq 375 6 EMT EMT NNP cord-010027-r0tl01kq 375 7 ) ) -RRB- cord-010027-r0tl01kq 375 8 is be VBZ cord-010027-r0tl01kq 375 9 a a DT cord-010027-r0tl01kq 375 10 process process NN cord-010027-r0tl01kq 375 11 whereby whereby WRB cord-010027-r0tl01kq 375 12 cells cell NNS cord-010027-r0tl01kq 375 13 acquire acquire VBP cord-010027-r0tl01kq 375 14 an an DT cord-010027-r0tl01kq 375 15 invasive invasive JJ cord-010027-r0tl01kq 375 16 phenotype phenotype NN cord-010027-r0tl01kq 375 17 to to TO cord-010027-r0tl01kq 375 18 aid aid VB cord-010027-r0tl01kq 375 19 cell cell NN cord-010027-r0tl01kq 375 20 migration migration NN cord-010027-r0tl01kq 375 21 and and CC cord-010027-r0tl01kq 375 22 is be VBZ cord-010027-r0tl01kq 375 23 found find VBN cord-010027-r0tl01kq 375 24 to to TO cord-010027-r0tl01kq 375 25 occur occur VB cord-010027-r0tl01kq 375 26 in in IN cord-010027-r0tl01kq 375 27 a a DT cord-010027-r0tl01kq 375 28 number number NN cord-010027-r0tl01kq 375 29 of of IN cord-010027-r0tl01kq 375 30 biological biological JJ cord-010027-r0tl01kq 375 31 processes process NNS cord-010027-r0tl01kq 375 32 including include VBG cord-010027-r0tl01kq 375 33 cancer cancer NN cord-010027-r0tl01kq 375 34 metastasis metastasis NN cord-010027-r0tl01kq 375 35 . . . cord-010027-r0tl01kq 376 1 We -PRON- PRP cord-010027-r0tl01kq 376 2 investigated investigate VBD cord-010027-r0tl01kq 376 3 whether whether IN cord-010027-r0tl01kq 376 4 Cten Cten NNP cord-010027-r0tl01kq 376 5 increases increase VBZ cord-010027-r0tl01kq 376 6 cell cell NN cord-010027-r0tl01kq 376 7 migration migration NN cord-010027-r0tl01kq 376 8 through through IN cord-010027-r0tl01kq 376 9 EMT EMT NNP cord-010027-r0tl01kq 376 10 pathways pathway NNS cord-010027-r0tl01kq 376 11 in in IN cord-010027-r0tl01kq 376 12 colorectal colorectal JJ cord-010027-r0tl01kq 376 13 cancer cancer NN cord-010027-r0tl01kq 376 14 . . . cord-010027-r0tl01kq 377 1 Cten Cten NNP cord-010027-r0tl01kq 377 2 was be VBD cord-010027-r0tl01kq 377 3 forcibly forcibly RB cord-010027-r0tl01kq 377 4 expressed express VBN cord-010027-r0tl01kq 377 5 in in IN cord-010027-r0tl01kq 377 6 colorectal colorectal JJ cord-010027-r0tl01kq 377 7 cell cell NN cord-010027-r0tl01kq 377 8 lines line NNS cord-010027-r0tl01kq 377 9 and and CC cord-010027-r0tl01kq 377 10 Snail Snail NNP cord-010027-r0tl01kq 377 11 expression expression NN cord-010027-r0tl01kq 377 12 determined determine VBN cord-010027-r0tl01kq 377 13 by by IN cord-010027-r0tl01kq 377 14 qPCR qPCR NNP cord-010027-r0tl01kq 377 15 and and CC cord-010027-r0tl01kq 377 16 western western JJ cord-010027-r0tl01kq 377 17 blot blot NN cord-010027-r0tl01kq 377 18 . . . cord-010027-r0tl01kq 378 1 The the DT cord-010027-r0tl01kq 378 2 cycloheximide cycloheximide NN cord-010027-r0tl01kq 378 3 pulse pulse NN cord-010027-r0tl01kq 378 4 chase chase NN cord-010027-r0tl01kq 378 5 assay assay NN cord-010027-r0tl01kq 378 6 was be VBD cord-010027-r0tl01kq 378 7 used use VBN cord-010027-r0tl01kq 378 8 to to TO cord-010027-r0tl01kq 378 9 assess assess VB cord-010027-r0tl01kq 378 10 any any DT cord-010027-r0tl01kq 378 11 changes change NNS cord-010027-r0tl01kq 378 12 in in IN cord-010027-r0tl01kq 378 13 Snail Snail NNP cord-010027-r0tl01kq 378 14 protein protein NN cord-010027-r0tl01kq 378 15 stability stability NN cord-010027-r0tl01kq 378 16 . . . cord-010027-r0tl01kq 379 1 Further further RB cord-010027-r0tl01kq 379 2 to to IN cord-010027-r0tl01kq 379 3 this this DT cord-010027-r0tl01kq 379 4 , , , cord-010027-r0tl01kq 379 5 the the DT cord-010027-r0tl01kq 379 6 Transwell Transwell NNP cord-010027-r0tl01kq 379 7 migration migration NN cord-010027-r0tl01kq 379 8 assay assay NN cord-010027-r0tl01kq 379 9 was be VBD cord-010027-r0tl01kq 379 10 performed perform VBN cord-010027-r0tl01kq 379 11 to to TO cord-010027-r0tl01kq 379 12 investigate investigate VB cord-010027-r0tl01kq 379 13 changes change NNS cord-010027-r0tl01kq 379 14 in in IN cord-010027-r0tl01kq 379 15 cell cell NN cord-010027-r0tl01kq 379 16 motility motility NN cord-010027-r0tl01kq 379 17 . . . cord-010027-r0tl01kq 380 1 Forced force VBN cord-010027-r0tl01kq 380 2 expression expression NN cord-010027-r0tl01kq 380 3 of of IN cord-010027-r0tl01kq 380 4 Cten Cten NNP cord-010027-r0tl01kq 380 5 was be VBD cord-010027-r0tl01kq 380 6 shown show VBN cord-010027-r0tl01kq 380 7 to to TO cord-010027-r0tl01kq 380 8 increase increase VB cord-010027-r0tl01kq 380 9 Snail Snail NNP cord-010027-r0tl01kq 380 10 protein protein NN cord-010027-r0tl01kq 380 11 expression expression NN cord-010027-r0tl01kq 380 12 in in IN cord-010027-r0tl01kq 380 13 HCT116 HCT116 NNP cord-010027-r0tl01kq 380 14 and and CC cord-010027-r0tl01kq 380 15 Caco2 caco2 JJ cord-010027-r0tl01kq 380 16 cell cell NN cord-010027-r0tl01kq 380 17 lines line NNS cord-010027-r0tl01kq 380 18 . . . cord-010027-r0tl01kq 381 1 There there EX cord-010027-r0tl01kq 381 2 was be VBD cord-010027-r0tl01kq 381 3 no no DT cord-010027-r0tl01kq 381 4 change change NN cord-010027-r0tl01kq 381 5 in in IN cord-010027-r0tl01kq 381 6 the the DT cord-010027-r0tl01kq 381 7 level level NN cord-010027-r0tl01kq 381 8 of of IN cord-010027-r0tl01kq 381 9 Snail Snail NNP cord-010027-r0tl01kq 381 10 mRNA mRNA NNP cord-010027-r0tl01kq 381 11 suggesting suggest VBG cord-010027-r0tl01kq 381 12 that that IN cord-010027-r0tl01kq 381 13 Cten Cten NNP cord-010027-r0tl01kq 381 14 regulates regulate VBZ cord-010027-r0tl01kq 381 15 Snail Snail NNP cord-010027-r0tl01kq 381 16 at at IN cord-010027-r0tl01kq 381 17 a a DT cord-010027-r0tl01kq 381 18 post post JJ cord-010027-r0tl01kq 381 19 transcriptional transcriptional JJ cord-010027-r0tl01kq 381 20 level level NN cord-010027-r0tl01kq 381 21 . . . cord-010027-r0tl01kq 382 1 Inhibition inhibition NN cord-010027-r0tl01kq 382 2 of of IN cord-010027-r0tl01kq 382 3 protein protein NN cord-010027-r0tl01kq 382 4 synthesis synthesis NN cord-010027-r0tl01kq 382 5 confirmed confirm VBD cord-010027-r0tl01kq 382 6 this this DT cord-010027-r0tl01kq 382 7 and and CC cord-010027-r0tl01kq 382 8 showed show VBD cord-010027-r0tl01kq 382 9 that that IN cord-010027-r0tl01kq 382 10 Cten Cten NNP cord-010027-r0tl01kq 382 11 regulates regulate VBZ cord-010027-r0tl01kq 382 12 the the DT cord-010027-r0tl01kq 382 13 stability stability NN cord-010027-r0tl01kq 382 14 of of IN cord-010027-r0tl01kq 382 15 Snail Snail NNP cord-010027-r0tl01kq 382 16 protein protein NN cord-010027-r0tl01kq 382 17 . . . cord-010027-r0tl01kq 383 1 Simultaneous simultaneous JJ cord-010027-r0tl01kq 383 2 forced force VBN cord-010027-r0tl01kq 383 3 expression expression NN cord-010027-r0tl01kq 383 4 of of IN cord-010027-r0tl01kq 383 5 Cten Cten NNP cord-010027-r0tl01kq 383 6 and and CC cord-010027-r0tl01kq 383 7 knockdown knockdown NN cord-010027-r0tl01kq 383 8 of of IN cord-010027-r0tl01kq 383 9 Snail Snail NNP cord-010027-r0tl01kq 383 10 demonstrated demonstrate VBD cord-010027-r0tl01kq 383 11 that that IN cord-010027-r0tl01kq 383 12 this this DT cord-010027-r0tl01kq 383 13 relationship relationship NN cord-010027-r0tl01kq 383 14 was be VBD cord-010027-r0tl01kq 383 15 functionally functionally RB cord-010027-r0tl01kq 383 16 active active JJ cord-010027-r0tl01kq 383 17 . . . cord-010027-r0tl01kq 384 1 Forced force VBN cord-010027-r0tl01kq 384 2 expression expression NN cord-010027-r0tl01kq 384 3 of of IN cord-010027-r0tl01kq 384 4 Cten Cten NNP cord-010027-r0tl01kq 384 5 increased increase VBD cord-010027-r0tl01kq 384 6 cell cell NN cord-010027-r0tl01kq 384 7 migration migration NN cord-010027-r0tl01kq 384 8 ( ( -LRB- cord-010027-r0tl01kq 384 9 p<0.05 p<0.05 CD cord-010027-r0tl01kq 384 10 ) ) -RRB- cord-010027-r0tl01kq 384 11 which which WDT cord-010027-r0tl01kq 384 12 was be VBD cord-010027-r0tl01kq 384 13 subsequently subsequently RB cord-010027-r0tl01kq 384 14 lost lose VBN cord-010027-r0tl01kq 384 15 when when WRB cord-010027-r0tl01kq 384 16 Snail Snail NNP cord-010027-r0tl01kq 384 17 was be VBD cord-010027-r0tl01kq 384 18 knocked knock VBN cord-010027-r0tl01kq 384 19 down down RP cord-010027-r0tl01kq 384 20 ( ( -LRB- cord-010027-r0tl01kq 384 21 p<0.001 p<0.001 CD cord-010027-r0tl01kq 384 22 ) ) -RRB- cord-010027-r0tl01kq 384 23 . . . cord-010027-r0tl01kq 385 1 We -PRON- PRP cord-010027-r0tl01kq 385 2 are be VBP cord-010027-r0tl01kq 385 3 the the DT cord-010027-r0tl01kq 385 4 first first JJ cord-010027-r0tl01kq 385 5 to to TO cord-010027-r0tl01kq 385 6 identify identify VB cord-010027-r0tl01kq 385 7 Snail Snail NNP cord-010027-r0tl01kq 385 8 as as IN cord-010027-r0tl01kq 385 9 a a DT cord-010027-r0tl01kq 385 10 downstream downstream JJ cord-010027-r0tl01kq 385 11 target target NN cord-010027-r0tl01kq 385 12 of of IN cord-010027-r0tl01kq 385 13 Cten Cten NNP cord-010027-r0tl01kq 385 14 signalling signal VBG cord-010027-r0tl01kq 385 15 . . . cord-010027-r0tl01kq 386 1 This this DT cord-010027-r0tl01kq 386 2 finding finding NN cord-010027-r0tl01kq 386 3 advances advance VBZ cord-010027-r0tl01kq 386 4 the the DT cord-010027-r0tl01kq 386 5 understanding understanding NN cord-010027-r0tl01kq 386 6 of of IN cord-010027-r0tl01kq 386 7 cancer cancer NN cord-010027-r0tl01kq 386 8 cell cell NN cord-010027-r0tl01kq 386 9 motility motility NN cord-010027-r0tl01kq 386 10 regulatory regulatory JJ cord-010027-r0tl01kq 386 11 networks network NNS cord-010027-r0tl01kq 386 12 and and CC cord-010027-r0tl01kq 386 13 further further JJ cord-010027-r0tl01kq 386 14 highlights highlight NNS cord-010027-r0tl01kq 386 15 Cten Cten NNP cord-010027-r0tl01kq 386 16 as as IN cord-010027-r0tl01kq 386 17 a a DT cord-010027-r0tl01kq 386 18 potential potential JJ cord-010027-r0tl01kq 386 19 therapeutic therapeutic JJ cord-010027-r0tl01kq 386 20 target target NN cord-010027-r0tl01kq 386 21 in in IN cord-010027-r0tl01kq 386 22 colorectal colorectal JJ cord-010027-r0tl01kq 386 23 cancer cancer NN cord-010027-r0tl01kq 386 24 . . . cord-010027-r0tl01kq 387 1 Work work NN cord-010027-r0tl01kq 387 2 supported support VBN cord-010027-r0tl01kq 387 3 by by IN cord-010027-r0tl01kq 387 4 a a DT cord-010027-r0tl01kq 387 5 Pathological Pathological NNP cord-010027-r0tl01kq 387 6 Society Society NNP cord-010027-r0tl01kq 387 7 grant grant NN cord-010027-r0tl01kq 387 8 . . . cord-010027-r0tl01kq 388 1 Treatment treatment NN cord-010027-r0tl01kq 388 2 Strategies strategy NNS cord-010027-r0tl01kq 388 3 for for IN cord-010027-r0tl01kq 388 4 Patients patient NNS cord-010027-r0tl01kq 388 5 with with IN cord-010027-r0tl01kq 388 6 Advanced Advanced NNP cord-010027-r0tl01kq 388 7 Colorectal Colorectal NNP cord-010027-r0tl01kq 388 8 Cancer Cancer NNP cord-010027-r0tl01kq 388 9 P P NNP cord-010027-r0tl01kq 388 10 SD SD NNP cord-010027-r0tl01kq 388 11 Richman Richman NNP cord-010027-r0tl01kq 388 12 1 1 CD cord-010027-r0tl01kq 388 13 ; ; : cord-010027-r0tl01kq 388 14 GJ GJ NNP cord-010027-r0tl01kq 388 15 Hemmings Hemmings NNP cord-010027-r0tl01kq 388 16 1 1 CD cord-010027-r0tl01kq 388 17 ; ; : cord-010027-r0tl01kq 388 18 P p NN cord-010027-r0tl01kq 388 19 Chambers chamber NNS cord-010027-r0tl01kq 388 20 1 1 CD cord-010027-r0tl01kq 388 21 ; ; : cord-010027-r0tl01kq 388 22 M M NNP cord-010027-r0tl01kq 388 23 Taylor Taylor NNP cord-010027-r0tl01kq 388 24 1 1 CD cord-010027-r0tl01kq 388 25 ; ; : cord-010027-r0tl01kq 388 26 HM HM NNP cord-010027-r0tl01kq 388 27 Wood Wood NNP cord-010027-r0tl01kq 388 28 1 1 CD cord-010027-r0tl01kq 388 29 ; ; : cord-010027-r0tl01kq 388 30 E E NNP cord-010027-r0tl01kq 388 31 Tinkler Tinkler NNP cord-010027-r0tl01kq 388 32 - - HYPH cord-010027-r0tl01kq 388 33 Hundal Hundal NNP cord-010027-r0tl01kq 388 34 1 1 CD cord-010027-r0tl01kq 388 35 ; ; : cord-010027-r0tl01kq 389 1 K K NNP cord-010027-r0tl01kq 389 2 Southward Southward NNP cord-010027-r0tl01kq 389 3 1 1 CD cord-010027-r0tl01kq 389 4 ; ; : cord-010027-r0tl01kq 389 5 JM JM NNP cord-010027-r0tl01kq 389 6 Foster Foster NNP cord-010027-r0tl01kq 389 7 2 2 CD cord-010027-r0tl01kq 389 8 ; ; : cord-010027-r0tl01kq 389 9 A a DT cord-010027-r0tl01kq 389 10 Ouime Ouime NNP cord-010027-r0tl01kq 389 11 2 2 CD cord-010027-r0tl01kq 389 12 ; ; : cord-010027-r0tl01kq 389 13 KG KG NNP cord-010027-r0tl01kq 389 14 Spink Spink NNP cord-010027-r0tl01kq 389 15 2 2 CD cord-010027-r0tl01kq 389 16 ; ; : cord-010027-r0tl01kq 389 17 P P NNP cord-010027-r0tl01kq 389 18 Quirke Quirke NNP cord-010027-r0tl01kq 389 19 1 1 CD cord-010027-r0tl01kq 389 20 1 1 CD cord-010027-r0tl01kq 389 21 Leeds Leeds NNP cord-010027-r0tl01kq 389 22 Institute Institute NNP cord-010027-r0tl01kq 389 23 of of IN cord-010027-r0tl01kq 389 24 Cancer Cancer NNP cord-010027-r0tl01kq 389 25 and and CC cord-010027-r0tl01kq 389 26 Pathology Pathology NNP cord-010027-r0tl01kq 389 27 , , , cord-010027-r0tl01kq 389 28 Leeds Leeds NNP cord-010027-r0tl01kq 389 29 , , , cord-010027-r0tl01kq 389 30 UK UK NNP cord-010027-r0tl01kq 389 31 ; ; : cord-010027-r0tl01kq 389 32 2 2 CD cord-010027-r0tl01kq 389 33 Affymetrix Affymetrix NNP cord-010027-r0tl01kq 389 34 , , , cord-010027-r0tl01kq 389 35 High High NNP cord-010027-r0tl01kq 389 36 Wycombe Wycombe NNP cord-010027-r0tl01kq 389 37 , , , cord-010027-r0tl01kq 389 38 UK UK NNP cord-010027-r0tl01kq 389 39 Treatment Treatment NNP cord-010027-r0tl01kq 389 40 for for IN cord-010027-r0tl01kq 389 41 advanced advanced JJ cord-010027-r0tl01kq 389 42 colorectal colorectal JJ cord-010027-r0tl01kq 389 43 cancer cancer NN cord-010027-r0tl01kq 389 44 is be VBZ cord-010027-r0tl01kq 389 45 moving move VBG cord-010027-r0tl01kq 389 46 to to IN cord-010027-r0tl01kq 389 47 combination combination NN cord-010027-r0tl01kq 389 48 therapies therapy NNS cord-010027-r0tl01kq 389 49 , , , cord-010027-r0tl01kq 389 50 targeting target VBG cord-010027-r0tl01kq 389 51 multiple multiple JJ cord-010027-r0tl01kq 389 52 signalling signal VBG cord-010027-r0tl01kq 389 53 pathways pathway NNS cord-010027-r0tl01kq 389 54 . . . cord-010027-r0tl01kq 390 1 Indeed indeed RB cord-010027-r0tl01kq 390 2 , , , cord-010027-r0tl01kq 390 3 MRC MRC NNP cord-010027-r0tl01kq 390 4 FOCUS4 FOCUS4 NNP cord-010027-r0tl01kq 390 5 has have VBZ cord-010027-r0tl01kq 390 6 been be VBN cord-010027-r0tl01kq 390 7 designed design VBN cord-010027-r0tl01kq 390 8 to to TO cord-010027-r0tl01kq 390 9 assess assess VB cord-010027-r0tl01kq 390 10 this this DT cord-010027-r0tl01kq 390 11 . . . cord-010027-r0tl01kq 391 1 We -PRON- PRP cord-010027-r0tl01kq 391 2 determined determine VBD cord-010027-r0tl01kq 391 3 pTEN pten NN cord-010027-r0tl01kq 391 4 protein protein NN cord-010027-r0tl01kq 391 5 expression expression NN cord-010027-r0tl01kq 391 6 , , , cord-010027-r0tl01kq 391 7 and and CC cord-010027-r0tl01kq 391 8 assessed assess VBD cord-010027-r0tl01kq 391 9 this this DT cord-010027-r0tl01kq 391 10 in in IN cord-010027-r0tl01kq 391 11 relation relation NN cord-010027-r0tl01kq 391 12 to to IN cord-010027-r0tl01kq 391 13 other other JJ cord-010027-r0tl01kq 391 14 biomarkers biomarker NNS cord-010027-r0tl01kq 391 15 associated associate VBN cord-010027-r0tl01kq 391 16 with with IN cord-010027-r0tl01kq 391 17 signalling signal VBG cord-010027-r0tl01kq 391 18 downstream downstream NN cord-010027-r0tl01kq 391 19 of of IN cord-010027-r0tl01kq 391 20 the the DT cord-010027-r0tl01kq 391 21 epidermal epidermal JJ cord-010027-r0tl01kq 391 22 growth growth NN cord-010027-r0tl01kq 391 23 factor factor NN cord-010027-r0tl01kq 391 24 receptor receptor NN cord-010027-r0tl01kq 391 25 . . . cord-010027-r0tl01kq 392 1 Tissue tissue NN cord-010027-r0tl01kq 392 2 microarrays microarray NNS cord-010027-r0tl01kq 392 3 were be VBD cord-010027-r0tl01kq 392 4 constructed construct VBN cord-010027-r0tl01kq 392 5 from from IN cord-010027-r0tl01kq 392 6 2 2 CD cord-010027-r0tl01kq 392 7 advanced advanced JJ cord-010027-r0tl01kq 392 8 colorectal colorectal JJ cord-010027-r0tl01kq 392 9 cancer cancer NN cord-010027-r0tl01kq 392 10 ( ( -LRB- cord-010027-r0tl01kq 392 11 aCRC acrc JJ cord-010027-r0tl01kq 392 12 ) ) -RRB- cord-010027-r0tl01kq 392 13 clinical clinical JJ cord-010027-r0tl01kq 392 14 trials trial NNS cord-010027-r0tl01kq 392 15 ( ( -LRB- cord-010027-r0tl01kq 392 16 FOCUS FOCUS NNP cord-010027-r0tl01kq 392 17 and and CC cord-010027-r0tl01kq 392 18 PICCOLO PICCOLO NNP cord-010027-r0tl01kq 392 19 ) ) -RRB- cord-010027-r0tl01kq 392 20 for for IN cord-010027-r0tl01kq 392 21 immunohistochemistry immunohistochemistry NN cord-010027-r0tl01kq 392 22 ( ( -LRB- cord-010027-r0tl01kq 392 23 IHC IHC NNP cord-010027-r0tl01kq 392 24 ) ) -RRB- cord-010027-r0tl01kq 392 25 . . . cord-010027-r0tl01kq 393 1 Mutation mutation NN cord-010027-r0tl01kq 393 2 status status NN cord-010027-r0tl01kq 393 3 of of IN cord-010027-r0tl01kq 393 4 KRAS KRAS NNP cord-010027-r0tl01kq 393 5 , , , cord-010027-r0tl01kq 393 6 NRAS NRAS NNP cord-010027-r0tl01kq 393 7 , , , cord-010027-r0tl01kq 393 8 PIK3CA pik3ca NN cord-010027-r0tl01kq 393 9 and and CC cord-010027-r0tl01kq 393 10 BRAF BRAF NNP cord-010027-r0tl01kq 393 11 was be VBD cord-010027-r0tl01kq 393 12 assessed assess VBN cord-010027-r0tl01kq 393 13 by by IN cord-010027-r0tl01kq 393 14 pyrosequencing pyrosequence VBG cord-010027-r0tl01kq 393 15 . . . cord-010027-r0tl01kq 394 1 Copy copy JJ cord-010027-r0tl01kq 394 2 number number NN cord-010027-r0tl01kq 394 3 variation variation NN cord-010027-r0tl01kq 394 4 was be VBD cord-010027-r0tl01kq 394 5 assessed assess VBN cord-010027-r0tl01kq 394 6 on on IN cord-010027-r0tl01kq 394 7 Oncoscan Oncoscan NNP cord-010027-r0tl01kq 394 8 ® ® POS cord-010027-r0tl01kq 394 9 FFPE FFPE NNP cord-010027-r0tl01kq 394 10 Assay Assay NNP cord-010027-r0tl01kq 394 11 Kit kit NN cord-010027-r0tl01kq 394 12 ( ( -LRB- cord-010027-r0tl01kq 394 13 Affymetrix Affymetrix NNP cord-010027-r0tl01kq 394 14 Inc. Inc. NNP cord-010027-r0tl01kq 394 15 ) ) -RRB- cord-010027-r0tl01kq 394 16 . . . cord-010027-r0tl01kq 395 1 pTEN pTEN NNP cord-010027-r0tl01kq 395 2 protein protein NNP cord-010027-r0tl01kq 395 3 expression expression NN cord-010027-r0tl01kq 395 4 was be VBD cord-010027-r0tl01kq 395 5 correlated correlate VBN cord-010027-r0tl01kq 395 6 with with IN cord-010027-r0tl01kq 395 7 mutation mutation NN cord-010027-r0tl01kq 395 8 status status NN cord-010027-r0tl01kq 395 9 , , , cord-010027-r0tl01kq 395 10 MMR MMR NNP cord-010027-r0tl01kq 395 11 status status NN cord-010027-r0tl01kq 395 12 , , , cord-010027-r0tl01kq 395 13 primary primary JJ cord-010027-r0tl01kq 395 14 tumour tumour NN cord-010027-r0tl01kq 395 15 location location NN cord-010027-r0tl01kq 395 16 and and CC cord-010027-r0tl01kq 395 17 copy copy NN cord-010027-r0tl01kq 395 18 number number NN cord-010027-r0tl01kq 395 19 . . . cord-010027-r0tl01kq 396 1 pTEN pTEN NNP cord-010027-r0tl01kq 396 2 protein protein NN cord-010027-r0tl01kq 396 3 expression expression NN cord-010027-r0tl01kq 396 4 for for IN cord-010027-r0tl01kq 396 5 1288 1288 CD cord-010027-r0tl01kq 396 6 patients patient NNS cord-010027-r0tl01kq 396 7 showed show VBD cord-010027-r0tl01kq 396 8 complete complete JJ cord-010027-r0tl01kq 396 9 loss loss NN cord-010027-r0tl01kq 396 10 of of IN cord-010027-r0tl01kq 396 11 expression expression NN cord-010027-r0tl01kq 396 12 in in IN cord-010027-r0tl01kq 396 13 85/787 85/787 CD cord-010027-r0tl01kq 396 14 ( ( -LRB- cord-010027-r0tl01kq 396 15 10.8 10.8 CD cord-010027-r0tl01kq 396 16 % % NN cord-010027-r0tl01kq 396 17 ) ) -RRB- cord-010027-r0tl01kq 396 18 -FOCUS -FOCUS . cord-010027-r0tl01kq 397 1 and and CC cord-010027-r0tl01kq 397 2 64/501 64/501 CD cord-010027-r0tl01kq 397 3 ( ( -LRB- cord-010027-r0tl01kq 397 4 12.8 12.8 CD cord-010027-r0tl01kq 397 5 % % NN cord-010027-r0tl01kq 397 6 ) ) -RRB- cord-010027-r0tl01kq 398 1 -PICCOLO -PICCOLO . cord-010027-r0tl01kq 398 2 . . . cord-010027-r0tl01kq 399 1 BRAF BRAF NNP cord-010027-r0tl01kq 399 2 mutation mutation NN cord-010027-r0tl01kq 399 3 status status NN cord-010027-r0tl01kq 399 4 was be VBD cord-010027-r0tl01kq 399 5 significantly significantly RB cord-010027-r0tl01kq 399 6 different different JJ cord-010027-r0tl01kq 399 7 between between IN cord-010027-r0tl01kq 399 8 the the DT cord-010027-r0tl01kq 399 9 pTEN pten JJ cord-010027-r0tl01kq 399 10 negative negative JJ cord-010027-r0tl01kq 399 11 and and CC cord-010027-r0tl01kq 399 12 pTEN pten JJ cord-010027-r0tl01kq 399 13 positive positive JJ cord-010027-r0tl01kq 399 14 populations population NNS cord-010027-r0tl01kq 399 15 ( ( -LRB- cord-010027-r0tl01kq 399 16 p<0.0001 p<0.0001 NNP cord-010027-r0tl01kq 399 17 ) ) -RRB- cord-010027-r0tl01kq 399 18 , , , cord-010027-r0tl01kq 399 19 with with IN cord-010027-r0tl01kq 399 20 significantly significantly RB cord-010027-r0tl01kq 399 21 more more JJR cord-010027-r0tl01kq 399 22 pTEN pten JJ cord-010027-r0tl01kq 399 23 negative negative JJ cord-010027-r0tl01kq 399 24 tumours tumour NNS cord-010027-r0tl01kq 399 25 having have VBG cord-010027-r0tl01kq 399 26 the the DT cord-010027-r0tl01kq 399 27 BRAF BRAF NNP cord-010027-r0tl01kq 399 28 V600E V600E NNP cord-010027-r0tl01kq 399 29 mutation mutation NN cord-010027-r0tl01kq 399 30 . . . cord-010027-r0tl01kq 400 1 Loss loss NN cord-010027-r0tl01kq 400 2 of of IN cord-010027-r0tl01kq 400 3 pTEN pten JJ cord-010027-r0tl01kq 400 4 expression expression NN cord-010027-r0tl01kq 400 5 correlated correlate VBN cord-010027-r0tl01kq 400 6 with with IN cord-010027-r0tl01kq 400 7 genomic genomic JJ cord-010027-r0tl01kq 400 8 deletions deletion NNS cord-010027-r0tl01kq 400 9 involving involve VBG cord-010027-r0tl01kq 400 10 the the DT cord-010027-r0tl01kq 400 11 pTEN pten NN cord-010027-r0tl01kq 400 12 gene gene NN cord-010027-r0tl01kq 400 13 . . . cord-010027-r0tl01kq 401 1 20/30 20/30 CD cord-010027-r0tl01kq 401 2 ( ( -LRB- cord-010027-r0tl01kq 401 3 66 66 CD cord-010027-r0tl01kq 401 4 % % NN cord-010027-r0tl01kq 401 5 ) ) -RRB- cord-010027-r0tl01kq 401 6 of of IN cord-010027-r0tl01kq 401 7 pTEN pten JJ cord-010027-r0tl01kq 401 8 negative negative JJ cord-010027-r0tl01kq 401 9 tumours tumour NNS cord-010027-r0tl01kq 401 10 exhibited exhibit VBD cord-010027-r0tl01kq 401 11 loss loss NN cord-010027-r0tl01kq 401 12 of of IN cord-010027-r0tl01kq 401 13 the the DT cord-010027-r0tl01kq 401 14 pTEN pten JJ cord-010027-r0tl01kq 401 15 region region NN cord-010027-r0tl01kq 401 16 ( ( -LRB- cord-010027-r0tl01kq 401 17 10q 10q CD cord-010027-r0tl01kq 401 18 ) ) -RRB- cord-010027-r0tl01kq 401 19 , , , cord-010027-r0tl01kq 401 20 half half NN cord-010027-r0tl01kq 401 21 of of IN cord-010027-r0tl01kq 401 22 which which WDT cord-010027-r0tl01kq 401 23 were be VBD cord-010027-r0tl01kq 401 24 focal focal JJ cord-010027-r0tl01kq 401 25 deletions deletion NNS cord-010027-r0tl01kq 401 26 . . . cord-010027-r0tl01kq 402 1 Only only RB cord-010027-r0tl01kq 402 2 54/202 54/202 CD cord-010027-r0tl01kq 402 3 ( ( -LRB- cord-010027-r0tl01kq 402 4 26.7 26.7 CD cord-010027-r0tl01kq 402 5 % % NN cord-010027-r0tl01kq 402 6 ) ) -RRB- cord-010027-r0tl01kq 403 1 pTEN pten JJ cord-010027-r0tl01kq 403 2 positive positive JJ cord-010027-r0tl01kq 403 3 tumours tumour NNS cord-010027-r0tl01kq 403 4 showed show VBD cord-010027-r0tl01kq 403 5 deletions deletion NNS cord-010027-r0tl01kq 403 6 of of IN cord-010027-r0tl01kq 403 7 this this DT cord-010027-r0tl01kq 403 8 region region NN cord-010027-r0tl01kq 403 9 , , , cord-010027-r0tl01kq 403 10 and and CC cord-010027-r0tl01kq 403 11 none none NN cord-010027-r0tl01kq 403 12 were be VBD cord-010027-r0tl01kq 403 13 focal focal JJ cord-010027-r0tl01kq 403 14 events event NNS cord-010027-r0tl01kq 403 15 . . . cord-010027-r0tl01kq 404 1 There there EX cord-010027-r0tl01kq 404 2 was be VBD cord-010027-r0tl01kq 404 3 no no DT cord-010027-r0tl01kq 404 4 significant significant JJ cord-010027-r0tl01kq 404 5 difference difference NN cord-010027-r0tl01kq 404 6 in in IN cord-010027-r0tl01kq 404 7 either either DT cord-010027-r0tl01kq 404 8 primary primary JJ cord-010027-r0tl01kq 404 9 tumour tumour NN cord-010027-r0tl01kq 404 10 site site NN cord-010027-r0tl01kq 404 11 or or CC cord-010027-r0tl01kq 404 12 MMR MMR NNP cord-010027-r0tl01kq 404 13 status status NN cord-010027-r0tl01kq 404 14 ( ( -LRB- cord-010027-r0tl01kq 404 15 p=0.1765 p=0.1765 NNP cord-010027-r0tl01kq 404 16 ) ) -RRB- cord-010027-r0tl01kq 404 17 between between IN cord-010027-r0tl01kq 404 18 the the DT cord-010027-r0tl01kq 404 19 pTEN pten JJ cord-010027-r0tl01kq 404 20 negative negative JJ cord-010027-r0tl01kq 404 21 and and CC cord-010027-r0tl01kq 404 22 pTEN pten JJ cord-010027-r0tl01kq 404 23 positive positive JJ cord-010027-r0tl01kq 404 24 populations population NNS cord-010027-r0tl01kq 404 25 . . . cord-010027-r0tl01kq 405 1 Signalling signal VBG cord-010027-r0tl01kq 405 2 pathways pathway NNS cord-010027-r0tl01kq 405 3 do do VBP cord-010027-r0tl01kq 405 4 not not RB cord-010027-r0tl01kq 405 5 stand stand VB cord-010027-r0tl01kq 405 6 in in IN cord-010027-r0tl01kq 405 7 isolation isolation NN cord-010027-r0tl01kq 405 8 ; ; : cord-010027-r0tl01kq 405 9 they -PRON- PRP cord-010027-r0tl01kq 405 10 are be VBP cord-010027-r0tl01kq 405 11 interlinked interlink VBN cord-010027-r0tl01kq 405 12 in in IN cord-010027-r0tl01kq 405 13 a a DT cord-010027-r0tl01kq 405 14 complex complex JJ cord-010027-r0tl01kq 405 15 signalling signalling NN cord-010027-r0tl01kq 405 16 network network NN cord-010027-r0tl01kq 405 17 . . . cord-010027-r0tl01kq 406 1 Current current JJ cord-010027-r0tl01kq 406 2 treatment treatment NN cord-010027-r0tl01kq 406 3 interventions intervention NNS cord-010027-r0tl01kq 406 4 must must MD cord-010027-r0tl01kq 406 5 target target VB cord-010027-r0tl01kq 406 6 the the DT cord-010027-r0tl01kq 406 7 correct correct JJ cord-010027-r0tl01kq 406 8 pathway pathway NN cord-010027-r0tl01kq 406 9 combinations combination NNS cord-010027-r0tl01kq 406 10 if if IN cord-010027-r0tl01kq 406 11 patients patient NNS cord-010027-r0tl01kq 406 12 are be VBP cord-010027-r0tl01kq 406 13 to to TO cord-010027-r0tl01kq 406 14 benefit benefit VB cord-010027-r0tl01kq 406 15 from from IN cord-010027-r0tl01kq 406 16 targeted target VBN cord-010027-r0tl01kq 406 17 therapy therapy NN cord-010027-r0tl01kq 406 18 . . . cord-010027-r0tl01kq 407 1 Our -PRON- PRP$ cord-010027-r0tl01kq 407 2 data data NN cord-010027-r0tl01kq 407 3 suggests suggest VBZ cord-010027-r0tl01kq 407 4 a a DT cord-010027-r0tl01kq 407 5 subset subset NN cord-010027-r0tl01kq 407 6 of of IN cord-010027-r0tl01kq 407 7 patients patient NNS cord-010027-r0tl01kq 407 8 may may MD cord-010027-r0tl01kq 407 9 require require VB cord-010027-r0tl01kq 407 10 dual dual JJ cord-010027-r0tl01kq 407 11 AKT AKT NNP cord-010027-r0tl01kq 407 12 and and CC cord-010027-r0tl01kq 407 13 MEK MEK NNP cord-010027-r0tl01kq 407 14 pathway pathway NN cord-010027-r0tl01kq 407 15 inhibition inhibition NN cord-010027-r0tl01kq 407 16 , , , cord-010027-r0tl01kq 407 17 in in IN cord-010027-r0tl01kq 407 18 addition addition NN cord-010027-r0tl01kq 407 19 to to IN cord-010027-r0tl01kq 407 20 anti anti JJ cord-010027-r0tl01kq 407 21 - - JJ cord-010027-r0tl01kq 407 22 EGFR egfr JJ cord-010027-r0tl01kq 407 23 monoclonal monoclonal JJ cord-010027-r0tl01kq 407 24 antibody antibody NN cord-010027-r0tl01kq 407 25 therapy therapy NN cord-010027-r0tl01kq 407 26 and and CC cord-010027-r0tl01kq 407 27 inhibition inhibition NN cord-010027-r0tl01kq 407 28 of of IN cord-010027-r0tl01kq 407 29 BRAF BRAF NNP cord-010027-r0tl01kq 407 30 . . . cord-010027-r0tl01kq 408 1 Zonal Zonal NNP cord-010027-r0tl01kq 408 2 Differences Differences NNPS cord-010027-r0tl01kq 408 3 in in IN cord-010027-r0tl01kq 408 4 PD1 PD1 NNP cord-010027-r0tl01kq 408 5 Expression Expression NNP cord-010027-r0tl01kq 408 6 in in IN cord-010027-r0tl01kq 408 7 Centre Centre NNP cord-010027-r0tl01kq 408 8 of of IN cord-010027-r0tl01kq 408 9 Tumour Tumour NNP cord-010027-r0tl01kq 409 1 Versus versus IN cord-010027-r0tl01kq 409 2 Periphery Periphery NNP cord-010027-r0tl01kq 409 3 in in IN cord-010027-r0tl01kq 409 4 Microsatellite Microsatellite NNP cord-010027-r0tl01kq 409 5 Stable stable JJ cord-010027-r0tl01kq 409 6 and and CC cord-010027-r0tl01kq 409 7 Unstable unstable JJ cord-010027-r0tl01kq 409 8 Colorectal Colorectal NNP cord-010027-r0tl01kq 410 1 Cancer cancer NN cord-010027-r0tl01kq 410 2 P p NN cord-010027-r0tl01kq 410 3 GM GM NNP cord-010027-r0tl01kq 410 4 O'Kane O'Kane NNP cord-010027-r0tl01kq 410 5 1 1 CD cord-010027-r0tl01kq 411 1 ; ; : cord-010027-r0tl01kq 411 2 M M NNP cord-010027-r0tl01kq 411 3 Lynch Lynch NNP cord-010027-r0tl01kq 411 4 2 2 CD cord-010027-r0tl01kq 411 5 ; ; : cord-010027-r0tl01kq 411 6 J J NNP cord-010027-r0tl01kq 411 7 Aird Aird NNP cord-010027-r0tl01kq 411 8 3 3 CD cord-010027-r0tl01kq 411 9 ; ; : cord-010027-r0tl01kq 411 10 S S NNP cord-010027-r0tl01kq 411 11 Hooper Hooper NNP cord-010027-r0tl01kq 411 12 3 3 CD cord-010027-r0tl01kq 411 13 ; ; : cord-010027-r0tl01kq 411 14 C C NNP cord-010027-r0tl01kq 411 15 Muldoon Muldoon NNP cord-010027-r0tl01kq 411 16 1 1 CD cord-010027-r0tl01kq 411 17 ; ; : cord-010027-r0tl01kq 411 18 N n CD cord-010027-r0tl01kq 411 19 Mulligan Mulligan NNP cord-010027-r0tl01kq 411 20 3 3 CD cord-010027-r0tl01kq 411 21 ; ; : cord-010027-r0tl01kq 411 22 C C NNP cord-010027-r0tl01kq 411 23 Loscher Loscher NNP cord-010027-r0tl01kq 411 24 2 2 CD cord-010027-r0tl01kq 411 25 ; ; : cord-010027-r0tl01kq 412 1 DJ DJ NNP cord-010027-r0tl01kq 412 2 Gallagher Gallagher NNP cord-010027-r0tl01kq 412 3 3 3 CD cord-010027-r0tl01kq 412 4 1 1 CD cord-010027-r0tl01kq 412 5 St. St. NNP cord-010027-r0tl01kq 412 6 James James NNP cord-010027-r0tl01kq 412 7 's 's POS cord-010027-r0tl01kq 412 8 Hospital Hospital NNP cord-010027-r0tl01kq 412 9 , , , cord-010027-r0tl01kq 412 10 Dublin Dublin NNP cord-010027-r0tl01kq 412 11 , , , cord-010027-r0tl01kq 412 12 Ireland Ireland NNP cord-010027-r0tl01kq 412 13 ; ; : cord-010027-r0tl01kq 412 14 2 2 CD cord-010027-r0tl01kq 412 15 Dublin Dublin NNP cord-010027-r0tl01kq 412 16 City City NNP cord-010027-r0tl01kq 412 17 University University NNP cord-010027-r0tl01kq 412 18 , , , cord-010027-r0tl01kq 412 19 Dublin Dublin NNP cord-010027-r0tl01kq 412 20 , , , cord-010027-r0tl01kq 412 21 Ireland Ireland NNP cord-010027-r0tl01kq 412 22 ; ; : cord-010027-r0tl01kq 412 23 3 3 CD cord-010027-r0tl01kq 412 24 Mater Mater NNP cord-010027-r0tl01kq 412 25 Misericordiae Misericordiae NNP cord-010027-r0tl01kq 412 26 University University NNP cord-010027-r0tl01kq 412 27 Hospital Hospital NNP cord-010027-r0tl01kq 412 28 , , , cord-010027-r0tl01kq 412 29 Dublin Dublin NNP cord-010027-r0tl01kq 412 30 , , , cord-010027-r0tl01kq 412 31 Ireland Ireland NNP cord-010027-r0tl01kq 412 32 Colorectal Colorectal NNP cord-010027-r0tl01kq 412 33 cancers cancer NNS cord-010027-r0tl01kq 412 34 ( ( -LRB- cord-010027-r0tl01kq 412 35 CRC CRC NNP cord-010027-r0tl01kq 412 36 ) ) -RRB- cord-010027-r0tl01kq 412 37 that that WDT cord-010027-r0tl01kq 412 38 show show VBP cord-010027-r0tl01kq 412 39 evidence evidence NN cord-010027-r0tl01kq 412 40 of of IN cord-010027-r0tl01kq 412 41 microsatellite microsatellite JJ cord-010027-r0tl01kq 412 42 instability instability NN cord-010027-r0tl01kq 413 1 ( ( -LRB- cord-010027-r0tl01kq 413 2 MSI MSI NNP cord-010027-r0tl01kq 413 3 - - HYPH cord-010027-r0tl01kq 413 4 H H NNP cord-010027-r0tl01kq 413 5 ) ) -RRB- cord-010027-r0tl01kq 413 6 are be VBP cord-010027-r0tl01kq 413 7 marked mark VBN cord-010027-r0tl01kq 413 8 by by IN cord-010027-r0tl01kq 413 9 a a DT cord-010027-r0tl01kq 413 10 high high JJ cord-010027-r0tl01kq 413 11 tumour tumour NN cord-010027-r0tl01kq 413 12 infiltrating infiltrate VBG cord-010027-r0tl01kq 413 13 lymphocyte lymphocyte NN cord-010027-r0tl01kq 413 14 ( ( -LRB- cord-010027-r0tl01kq 413 15 TiL til NN cord-010027-r0tl01kq 413 16 ) ) -RRB- cord-010027-r0tl01kq 413 17 population population NN cord-010027-r0tl01kq 413 18 which which WDT cord-010027-r0tl01kq 413 19 is be VBZ cord-010027-r0tl01kq 413 20 thought think VBN cord-010027-r0tl01kq 413 21 to to TO cord-010027-r0tl01kq 413 22 be be VB cord-010027-r0tl01kq 413 23 prognostic prognostic JJ cord-010027-r0tl01kq 413 24 . . . cord-010027-r0tl01kq 414 1 Programmed program VBN cord-010027-r0tl01kq 414 2 cell cell NN cord-010027-r0tl01kq 414 3 death death NN cord-010027-r0tl01kq 414 4 1(PD-1 1(pd-1 CD cord-010027-r0tl01kq 414 5 ) ) -RRB- cord-010027-r0tl01kq 414 6 is be VBZ cord-010027-r0tl01kq 414 7 a a DT cord-010027-r0tl01kq 414 8 negative negative JJ cord-010027-r0tl01kq 414 9 regulator regulator NN cord-010027-r0tl01kq 414 10 of of IN cord-010027-r0tl01kq 414 11 the the DT cord-010027-r0tl01kq 414 12 immune immune JJ cord-010027-r0tl01kq 414 13 system system NN cord-010027-r0tl01kq 414 14 and and CC cord-010027-r0tl01kq 414 15 targeting target VBG cord-010027-r0tl01kq 414 16 the the DT cord-010027-r0tl01kq 414 17 interaction interaction NN cord-010027-r0tl01kq 414 18 with with IN cord-010027-r0tl01kq 414 19 its -PRON- PRP$ cord-010027-r0tl01kq 414 20 ligand ligand NN cord-010027-r0tl01kq 414 21 PD PD NNP cord-010027-r0tl01kq 414 22 - - HYPH cord-010027-r0tl01kq 414 23 L1 L1 NNP cord-010027-r0tl01kq 414 24 offers offer VBZ cord-010027-r0tl01kq 414 25 a a DT cord-010027-r0tl01kq 414 26 potential potential JJ cord-010027-r0tl01kq 414 27 therapeutic therapeutic JJ cord-010027-r0tl01kq 414 28 target target NN cord-010027-r0tl01kq 414 29 . . . cord-010027-r0tl01kq 415 1 We -PRON- PRP cord-010027-r0tl01kq 415 2 aimed aim VBD cord-010027-r0tl01kq 415 3 to to TO cord-010027-r0tl01kq 415 4 characterize characterize VB cord-010027-r0tl01kq 415 5 CD8 CD8 NNP cord-010027-r0tl01kq 415 6 and and CC cord-010027-r0tl01kq 415 7 PD-1 PD-1 NNP cord-010027-r0tl01kq 415 8 expression expression NN cord-010027-r0tl01kq 415 9 in in IN cord-010027-r0tl01kq 415 10 both both CC cord-010027-r0tl01kq 415 11 the the DT cord-010027-r0tl01kq 415 12 tumour tumour NN cord-010027-r0tl01kq 415 13 centre centre NN cord-010027-r0tl01kq 415 14 ( ( -LRB- cord-010027-r0tl01kq 415 15 cT ct NN cord-010027-r0tl01kq 415 16 ) ) -RRB- cord-010027-r0tl01kq 415 17 and and CC cord-010027-r0tl01kq 415 18 tumour tumour NN cord-010027-r0tl01kq 415 19 periphery periphery NN cord-010027-r0tl01kq 415 20 ( ( -LRB- cord-010027-r0tl01kq 415 21 pT pT NNP cord-010027-r0tl01kq 415 22 ) ) -RRB- cord-010027-r0tl01kq 415 23 of of IN cord-010027-r0tl01kq 415 24 microsatellite microsatellite JJ cord-010027-r0tl01kq 415 25 stable stable JJ cord-010027-r0tl01kq 415 26 ( ( -LRB- cord-010027-r0tl01kq 415 27 MSS MSS NNP cord-010027-r0tl01kq 415 28 ) ) -RRB- cord-010027-r0tl01kq 415 29 and and CC cord-010027-r0tl01kq 415 30 unstable unstable JJ cord-010027-r0tl01kq 415 31 CRC crc NN cord-010027-r0tl01kq 415 32 . . . cord-010027-r0tl01kq 416 1 Methods method NNS cord-010027-r0tl01kq 416 2 : : : cord-010027-r0tl01kq 416 3 Paraffin paraffin NN cord-010027-r0tl01kq 416 4 - - HYPH cord-010027-r0tl01kq 416 5 embedded embed VBN cord-010027-r0tl01kq 416 6 tumour tumour NN cord-010027-r0tl01kq 416 7 blocks block NNS cord-010027-r0tl01kq 416 8 were be VBD cord-010027-r0tl01kq 416 9 cut cut VBN cord-010027-r0tl01kq 416 10 at at IN cord-010027-r0tl01kq 416 11 5um 5um NN cord-010027-r0tl01kq 416 12 , , , cord-010027-r0tl01kq 416 13 prepared prepared JJ cord-010027-r0tl01kq 416 14 and and CC cord-010027-r0tl01kq 416 15 stained stain VBN cord-010027-r0tl01kq 416 16 using use VBG cord-010027-r0tl01kq 416 17 specific specific JJ cord-010027-r0tl01kq 416 18 antibodies antibody NNS cord-010027-r0tl01kq 416 19 for for IN cord-010027-r0tl01kq 416 20 CD8 CD8 NNP cord-010027-r0tl01kq 416 21 and and CC cord-010027-r0tl01kq 416 22 PD-1 PD-1 NNP cord-010027-r0tl01kq 416 23 . . . cord-010027-r0tl01kq 417 1 The the DT cord-010027-r0tl01kq 417 2 pT pT NNP cord-010027-r0tl01kq 417 3 was be VBD cord-010027-r0tl01kq 417 4 defined define VBN cord-010027-r0tl01kq 417 5 as as IN cord-010027-r0tl01kq 417 6 the the DT cord-010027-r0tl01kq 417 7 area area NN cord-010027-r0tl01kq 417 8 within within IN cord-010027-r0tl01kq 417 9 a a DT cord-010027-r0tl01kq 417 10 400x 400x CD cord-010027-r0tl01kq 417 11 high high JJ cord-010027-r0tl01kq 417 12 power power NN cord-010027-r0tl01kq 417 13 field field NN cord-010027-r0tl01kq 417 14 ( ( -LRB- cord-010027-r0tl01kq 417 15 HPF HPF NNP cord-010027-r0tl01kq 417 16 ) ) -RRB- cord-010027-r0tl01kq 417 17 from from IN cord-010027-r0tl01kq 417 18 the the DT cord-010027-r0tl01kq 417 19 outline outline NN cord-010027-r0tl01kq 417 20 of of IN cord-010027-r0tl01kq 417 21 the the DT cord-010027-r0tl01kq 417 22 tumor tumor NN cord-010027-r0tl01kq 417 23 . . . cord-010027-r0tl01kq 418 1 The the DT cord-010027-r0tl01kq 418 2 cT ct NN cord-010027-r0tl01kq 418 3 was be VBD cord-010027-r0tl01kq 418 4 defined define VBN cord-010027-r0tl01kq 418 5 as as IN cord-010027-r0tl01kq 418 6 the the DT cord-010027-r0tl01kq 418 7 area area NN cord-010027-r0tl01kq 418 8 at at IN cord-010027-r0tl01kq 418 9 least least JJS cord-010027-r0tl01kq 418 10 one one CD cord-010027-r0tl01kq 418 11 400x 400x CD cord-010027-r0tl01kq 418 12 HPF HPF NNP cord-010027-r0tl01kq 419 1 apart apart RB cord-010027-r0tl01kq 419 2 from from IN cord-010027-r0tl01kq 419 3 the the DT cord-010027-r0tl01kq 419 4 tumor tumor NN cord-010027-r0tl01kq 419 5 outline outline NN cord-010027-r0tl01kq 419 6 toward toward IN cord-010027-r0tl01kq 419 7 centre centre NN cord-010027-r0tl01kq 419 8 of of IN cord-010027-r0tl01kq 419 9 the the DT cord-010027-r0tl01kq 419 10 tumor tumor NN cord-010027-r0tl01kq 419 11 . . . cord-010027-r0tl01kq 420 1 Images image NNS cord-010027-r0tl01kq 420 2 were be VBD cord-010027-r0tl01kq 420 3 taken take VBN cord-010027-r0tl01kq 420 4 at at IN cord-010027-r0tl01kq 420 5 40x 40x CD cord-010027-r0tl01kq 420 6 , , , cord-010027-r0tl01kq 420 7 100x 100x CD cord-010027-r0tl01kq 420 8 , , , cord-010027-r0tl01kq 420 9 200x 200x CD cord-010027-r0tl01kq 420 10 and and CC cord-010027-r0tl01kq 420 11 400x 400x CD cord-010027-r0tl01kq 420 12 . . . cord-010027-r0tl01kq 421 1 Positive positive JJ cord-010027-r0tl01kq 421 2 cells cell NNS cord-010027-r0tl01kq 421 3 were be VBD cord-010027-r0tl01kq 421 4 averaged average VBN cord-010027-r0tl01kq 421 5 across across IN cord-010027-r0tl01kq 421 6 3 3 CD cord-010027-r0tl01kq 421 7 high high JJ cord-010027-r0tl01kq 421 8 power power NN cord-010027-r0tl01kq 421 9 fields field NNS cord-010027-r0tl01kq 421 10 and and CC cord-010027-r0tl01kq 421 11 classified classify VBN cord-010027-r0tl01kq 421 12 as as IN cord-010027-r0tl01kq 421 13 high high JJ cord-010027-r0tl01kq 421 14 or or CC cord-010027-r0tl01kq 421 15 low low JJ cord-010027-r0tl01kq 421 16 positivity positivity NN cord-010027-r0tl01kq 421 17 . . . cord-010027-r0tl01kq 422 1 Results result NNS cord-010027-r0tl01kq 422 2 : : : cord-010027-r0tl01kq 423 1 Forty forty CD cord-010027-r0tl01kq 423 2 - - HYPH cord-010027-r0tl01kq 423 3 two two CD cord-010027-r0tl01kq 423 4 specimens specimen NNS cord-010027-r0tl01kq 423 5 have have VBP cord-010027-r0tl01kq 423 6 been be VBN cord-010027-r0tl01kq 423 7 analysed analyse VBN cord-010027-r0tl01kq 423 8 to to IN cord-010027-r0tl01kq 423 9 date date NN cord-010027-r0tl01kq 423 10 including include VBG cord-010027-r0tl01kq 423 11 28 28 CD cord-010027-r0tl01kq 423 12 MSI MSI NNP cord-010027-r0tl01kq 423 13 - - HYPH cord-010027-r0tl01kq 423 14 H H NNP cord-010027-r0tl01kq 423 15 and and CC cord-010027-r0tl01kq 423 16 13 13 CD cord-010027-r0tl01kq 423 17 MSS MSS NNP cord-010027-r0tl01kq 423 18 tumours tumour NNS cord-010027-r0tl01kq 423 19 . . . cord-010027-r0tl01kq 424 1 Sixty sixty CD cord-010027-r0tl01kq 424 2 - - HYPH cord-010027-r0tl01kq 424 3 eight eight CD cord-010027-r0tl01kq 424 4 percent percent NN cord-010027-r0tl01kq 424 5 of of IN cord-010027-r0tl01kq 424 6 MSI MSI NNP cord-010027-r0tl01kq 424 7 - - HYPH cord-010027-r0tl01kq 424 8 H H NNP cord-010027-r0tl01kq 424 9 were be VBD cord-010027-r0tl01kq 424 10 stage stage NN cord-010027-r0tl01kq 424 11 II II NNP cord-010027-r0tl01kq 424 12 and and CC cord-010027-r0tl01kq 425 1 69 69 CD cord-010027-r0tl01kq 425 2 % % NN cord-010027-r0tl01kq 425 3 of of IN cord-010027-r0tl01kq 425 4 MSS MSS NNP cord-010027-r0tl01kq 425 5 were be VBD cord-010027-r0tl01kq 425 6 stage stage NN cord-010027-r0tl01kq 425 7 III III NNP cord-010027-r0tl01kq 425 8 . . . cord-010027-r0tl01kq 426 1 In in IN cord-010027-r0tl01kq 426 2 the the DT cord-010027-r0tl01kq 426 3 MSI MSI NNP cord-010027-r0tl01kq 426 4 - - HYPH cord-010027-r0tl01kq 426 5 H H NNP cord-010027-r0tl01kq 426 6 group group NN cord-010027-r0tl01kq 426 7 , , , cord-010027-r0tl01kq 426 8 a a DT cord-010027-r0tl01kq 426 9 high high JJ cord-010027-r0tl01kq 426 10 CD8 CD8 NNP cord-010027-r0tl01kq 426 11 count count VBP cord-010027-r0tl01kq 426 12 in in IN cord-010027-r0tl01kq 426 13 the the DT cord-010027-r0tl01kq 426 14 cT cT NNP cord-010027-r0tl01kq 426 15 and and CC cord-010027-r0tl01kq 426 16 pT pT NNP cord-010027-r0tl01kq 426 17 correlated correlate VBN cord-010027-r0tl01kq 426 18 with with IN cord-010027-r0tl01kq 426 19 and and CC cord-010027-r0tl01kq 426 20 earlier early JJR cord-010027-r0tl01kq 426 21 tumour tumour NN cord-010027-r0tl01kq 426 22 size size NN cord-010027-r0tl01kq 426 23 and and CC cord-010027-r0tl01kq 426 24 stage stage NN cord-010027-r0tl01kq 426 25 . . . cord-010027-r0tl01kq 427 1 PD-1 pd-1 DT cord-010027-r0tl01kq 427 2 positivity positivity NN cord-010027-r0tl01kq 427 3 was be VBD cord-010027-r0tl01kq 427 4 seen see VBN cord-010027-r0tl01kq 427 5 in in IN cord-010027-r0tl01kq 427 6 61 61 CD cord-010027-r0tl01kq 427 7 % % NN cord-010027-r0tl01kq 427 8 of of IN cord-010027-r0tl01kq 427 9 MSI MSI NNP cord-010027-r0tl01kq 427 10 - - HYPH cord-010027-r0tl01kq 427 11 H H NNP cord-010027-r0tl01kq 427 12 cT ct NN cord-010027-r0tl01kq 427 13 compared compare VBN cord-010027-r0tl01kq 427 14 to to IN cord-010027-r0tl01kq 427 15 0 0 CD cord-010027-r0tl01kq 427 16 % % NN cord-010027-r0tl01kq 427 17 positivity positivity NN cord-010027-r0tl01kq 427 18 in in IN cord-010027-r0tl01kq 427 19 the the DT cord-010027-r0tl01kq 427 20 cT ct NN cord-010027-r0tl01kq 427 21 of of IN cord-010027-r0tl01kq 427 22 MSS MSS NNP cord-010027-r0tl01kq 427 23 tumours tumour NNS cord-010027-r0tl01kq 427 24 . . . cord-010027-r0tl01kq 428 1 The the DT cord-010027-r0tl01kq 428 2 periphery periphery NN cord-010027-r0tl01kq 428 3 of of IN cord-010027-r0tl01kq 428 4 both both DT cord-010027-r0tl01kq 428 5 MSS MSS NNP cord-010027-r0tl01kq 428 6 and and CC cord-010027-r0tl01kq 428 7 MSI MSI NNP cord-010027-r0tl01kq 428 8 - - HYPH cord-010027-r0tl01kq 428 9 H H NNP cord-010027-r0tl01kq 428 10 specimens specimen NNS cord-010027-r0tl01kq 428 11 showed show VBD cord-010027-r0tl01kq 428 12 significant significant JJ cord-010027-r0tl01kq 428 13 PD-1 PD-1 NNP cord-010027-r0tl01kq 428 14 expression expression NN cord-010027-r0tl01kq 428 15 with with IN cord-010027-r0tl01kq 428 16 71 71 CD cord-010027-r0tl01kq 428 17 % % NN cord-010027-r0tl01kq 428 18 and and CC cord-010027-r0tl01kq 428 19 85 85 CD cord-010027-r0tl01kq 428 20 % % NN cord-010027-r0tl01kq 428 21 of of IN cord-010027-r0tl01kq 428 22 samples sample NNS cord-010027-r0tl01kq 428 23 showing show VBG cord-010027-r0tl01kq 428 24 positivity positivity NN cord-010027-r0tl01kq 428 25 respectively respectively RB cord-010027-r0tl01kq 428 26 . . . cord-010027-r0tl01kq 429 1 There there EX cord-010027-r0tl01kq 429 2 was be VBD cord-010027-r0tl01kq 429 3 no no DT cord-010027-r0tl01kq 429 4 association association NN cord-010027-r0tl01kq 429 5 between between IN cord-010027-r0tl01kq 429 6 high high JJ cord-010027-r0tl01kq 429 7 or or CC cord-010027-r0tl01kq 429 8 low low JJ cord-010027-r0tl01kq 429 9 densities density NNS cord-010027-r0tl01kq 429 10 of of IN cord-010027-r0tl01kq 429 11 staining staining NN cord-010027-r0tl01kq 429 12 and and CC cord-010027-r0tl01kq 429 13 stage stage NN cord-010027-r0tl01kq 429 14 . . . cord-010027-r0tl01kq 430 1 Conclusions conclusion NNS cord-010027-r0tl01kq 430 2 : : : cord-010027-r0tl01kq 431 1 Zonal zonal JJ cord-010027-r0tl01kq 431 2 differences difference NNS cord-010027-r0tl01kq 431 3 exist exist VBP cord-010027-r0tl01kq 431 4 in in IN cord-010027-r0tl01kq 431 5 the the DT cord-010027-r0tl01kq 431 6 expression expression NN cord-010027-r0tl01kq 431 7 of of IN cord-010027-r0tl01kq 431 8 CD8 CD8 NNP cord-010027-r0tl01kq 431 9 and and CC cord-010027-r0tl01kq 431 10 PD-1 PD-1 NNP cord-010027-r0tl01kq 431 11 in in IN cord-010027-r0tl01kq 431 12 microsatellite microsatellite JJ cord-010027-r0tl01kq 431 13 stable stable JJ cord-010027-r0tl01kq 431 14 and and CC cord-010027-r0tl01kq 431 15 unstable unstable JJ cord-010027-r0tl01kq 431 16 tumours tumour NNS cord-010027-r0tl01kq 431 17 . . . cord-010027-r0tl01kq 432 1 A a DT cord-010027-r0tl01kq 432 2 high high JJ cord-010027-r0tl01kq 432 3 proportion proportion NN cord-010027-r0tl01kq 432 4 of of IN cord-010027-r0tl01kq 432 5 MSI MSI NNP cord-010027-r0tl01kq 432 6 - - HYPH cord-010027-r0tl01kq 432 7 H H NNP cord-010027-r0tl01kq 432 8 tumours tumour NNS cord-010027-r0tl01kq 432 9 show show VBP cord-010027-r0tl01kq 432 10 PD-1 PD-1 NNP cord-010027-r0tl01kq 432 11 activity activity NN cord-010027-r0tl01kq 432 12 in in IN cord-010027-r0tl01kq 432 13 the the DT cord-010027-r0tl01kq 432 14 centre centre NN cord-010027-r0tl01kq 432 15 of of IN cord-010027-r0tl01kq 432 16 the the DT cord-010027-r0tl01kq 432 17 tumour tumour NN cord-010027-r0tl01kq 432 18 despite despite IN cord-010027-r0tl01kq 432 19 an an DT cord-010027-r0tl01kq 432 20 improved improved JJ cord-010027-r0tl01kq 432 21 prognosis prognosis NN cord-010027-r0tl01kq 432 22 . . . cord-010027-r0tl01kq 433 1 Further further JJ cord-010027-r0tl01kq 433 2 profiling profiling NN cord-010027-r0tl01kq 433 3 of of IN cord-010027-r0tl01kq 433 4 other other JJ cord-010027-r0tl01kq 433 5 T t NN cord-010027-r0tl01kq 433 6 cell cell NN cord-010027-r0tl01kq 433 7 populations population NNS cord-010027-r0tl01kq 433 8 may may MD cord-010027-r0tl01kq 433 9 help help VB cord-010027-r0tl01kq 433 10 to to TO cord-010027-r0tl01kq 433 11 further further RB cord-010027-r0tl01kq 433 12 understand understand VB cord-010027-r0tl01kq 433 13 this this DT cord-010027-r0tl01kq 433 14 expression expression NN cord-010027-r0tl01kq 433 15 which which WDT cord-010027-r0tl01kq 433 16 may may MD cord-010027-r0tl01kq 433 17 act act VB cord-010027-r0tl01kq 433 18 as as IN cord-010027-r0tl01kq 433 19 a a DT cord-010027-r0tl01kq 433 20 biomarker biomarker NN cord-010027-r0tl01kq 433 21 or or CC cord-010027-r0tl01kq 433 22 provide provide VB cord-010027-r0tl01kq 433 23 a a DT cord-010027-r0tl01kq 433 24 therapeutic therapeutic JJ cord-010027-r0tl01kq 433 25 target target NN cord-010027-r0tl01kq 433 26 Biomarkers biomarker NNS cord-010027-r0tl01kq 433 27 that that WDT cord-010027-r0tl01kq 433 28 are be VBP cord-010027-r0tl01kq 433 29 able able JJ cord-010027-r0tl01kq 433 30 to to TO cord-010027-r0tl01kq 433 31 distinguish distinguish VB cord-010027-r0tl01kq 433 32 stage stage NN cord-010027-r0tl01kq 433 33 II II NNP cord-010027-r0tl01kq 433 34 and and CC cord-010027-r0tl01kq 433 35 III iii CD cord-010027-r0tl01kq 433 36 colon colon NN cord-010027-r0tl01kq 433 37 cancer cancer NN cord-010027-r0tl01kq 433 38 patients patient NNS cord-010027-r0tl01kq 433 39 at at IN cord-010027-r0tl01kq 433 40 high high JJ cord-010027-r0tl01kq 433 41 risk risk NN cord-010027-r0tl01kq 433 42 of of IN cord-010027-r0tl01kq 433 43 developing develop VBG cord-010027-r0tl01kq 433 44 disease disease NN cord-010027-r0tl01kq 433 45 recurrence recurrence NN cord-010027-r0tl01kq 433 46 , , , cord-010027-r0tl01kq 433 47 who who WP cord-010027-r0tl01kq 433 48 may may MD cord-010027-r0tl01kq 433 49 benefit benefit VB cord-010027-r0tl01kq 433 50 from from IN cord-010027-r0tl01kq 433 51 adjuvant adjuvant JJ cord-010027-r0tl01kq 433 52 chemotherapy chemotherapy NN cord-010027-r0tl01kq 433 53 , , , cord-010027-r0tl01kq 433 54 are be VBP cord-010027-r0tl01kq 433 55 still still RB cord-010027-r0tl01kq 433 56 lacking lack VBG cord-010027-r0tl01kq 433 57 . . . cord-010027-r0tl01kq 434 1 Genome genome NN cord-010027-r0tl01kq 434 2 - - HYPH cord-010027-r0tl01kq 434 3 wide wide JJ cord-010027-r0tl01kq 434 4 profiling profiling NN cord-010027-r0tl01kq 434 5 of of IN cord-010027-r0tl01kq 434 6 somatic somatic JJ cord-010027-r0tl01kq 434 7 aberrations aberration NNS cord-010027-r0tl01kq 434 8 , , , cord-010027-r0tl01kq 434 9 including include VBG cord-010027-r0tl01kq 434 10 gene gene NN cord-010027-r0tl01kq 434 11 point point NN cord-010027-r0tl01kq 434 12 mutations mutation NNS cord-010027-r0tl01kq 434 13 , , , cord-010027-r0tl01kq 434 14 DNA DNA NNP cord-010027-r0tl01kq 434 15 copy copy NN cord-010027-r0tl01kq 434 16 number number NN cord-010027-r0tl01kq 434 17 aberrations aberration NNS cord-010027-r0tl01kq 434 18 ( ( -LRB- cord-010027-r0tl01kq 434 19 CNA CNA NNP cord-010027-r0tl01kq 434 20 ) ) -RRB- cord-010027-r0tl01kq 434 21 and and CC cord-010027-r0tl01kq 434 22 structural structural JJ cord-010027-r0tl01kq 434 23 variants variant NNS cord-010027-r0tl01kq 434 24 ( ( -LRB- cord-010027-r0tl01kq 434 25 SV SV NNP cord-010027-r0tl01kq 434 26 ) ) -RRB- cord-010027-r0tl01kq 434 27 , , , cord-010027-r0tl01kq 434 28 is be VBZ cord-010027-r0tl01kq 434 29 expected expect VBN cord-010027-r0tl01kq 434 30 to to TO cord-010027-r0tl01kq 434 31 provide provide VB cord-010027-r0tl01kq 434 32 better well JJR cord-010027-r0tl01kq 434 33 insight insight NN cord-010027-r0tl01kq 434 34 into into IN cord-010027-r0tl01kq 434 35 the the DT cord-010027-r0tl01kq 434 36 molecular molecular JJ cord-010027-r0tl01kq 434 37 pathology pathology NN cord-010027-r0tl01kq 434 38 of of IN cord-010027-r0tl01kq 434 39 tumour tumour NN cord-010027-r0tl01kq 434 40 progression progression NN cord-010027-r0tl01kq 434 41 and and CC cord-010027-r0tl01kq 434 42 clinical clinical JJ cord-010027-r0tl01kq 434 43 outcome outcome NN cord-010027-r0tl01kq 434 44 . . . cord-010027-r0tl01kq 435 1 Genome genome NN cord-010027-r0tl01kq 435 2 - - HYPH cord-010027-r0tl01kq 435 3 wide wide JJ cord-010027-r0tl01kq 435 4 analysis analysis NN cord-010027-r0tl01kq 435 5 of of IN cord-010027-r0tl01kq 435 6 CNAs CNAs NNPS cord-010027-r0tl01kq 435 7 was be VBD cord-010027-r0tl01kq 435 8 performed perform VBN cord-010027-r0tl01kq 435 9 using use VBG cord-010027-r0tl01kq 435 10 high high JJ cord-010027-r0tl01kq 435 11 - - HYPH cord-010027-r0tl01kq 435 12 resolution resolution NN cord-010027-r0tl01kq 435 13 comparative comparative JJ cord-010027-r0tl01kq 435 14 genomic genomic JJ cord-010027-r0tl01kq 435 15 hybridization hybridization NN cord-010027-r0tl01kq 435 16 for for IN cord-010027-r0tl01kq 435 17 microsatellite microsatellite JJ cord-010027-r0tl01kq 435 18 stable stable JJ cord-010027-r0tl01kq 435 19 ( ( -LRB- cord-010027-r0tl01kq 435 20 MSS MSS NNP cord-010027-r0tl01kq 435 21 ) ) -RRB- cord-010027-r0tl01kq 435 22 stage stage NN cord-010027-r0tl01kq 435 23 II II NNP cord-010027-r0tl01kq 435 24 and and CC cord-010027-r0tl01kq 435 25 III iii CD cord-010027-r0tl01kq 435 26 primary primary JJ cord-010027-r0tl01kq 435 27 colon colon NN cord-010027-r0tl01kq 435 28 cancer cancer NN cord-010027-r0tl01kq 435 29 samples sample NNS cord-010027-r0tl01kq 435 30 ( ( -LRB- cord-010027-r0tl01kq 435 31 n=114 n=114 NNP cord-010027-r0tl01kq 435 32 ) ) -RRB- cord-010027-r0tl01kq 435 33 . . . cord-010027-r0tl01kq 436 1 In in IN cord-010027-r0tl01kq 436 2 addition addition NN cord-010027-r0tl01kq 436 3 , , , cord-010027-r0tl01kq 436 4 the the DT cord-010027-r0tl01kq 436 5 prevalence prevalence NN cord-010027-r0tl01kq 436 6 of of IN cord-010027-r0tl01kq 436 7 genes gene NNS cord-010027-r0tl01kq 436 8 suffering suffer VBG cord-010027-r0tl01kq 436 9 from from IN cord-010027-r0tl01kq 436 10 CNA CNA NNP cord-010027-r0tl01kq 436 11 - - HYPH cord-010027-r0tl01kq 436 12 associated associate VBN cord-010027-r0tl01kq 436 13 chromosomal chromosomal JJ cord-010027-r0tl01kq 436 14 breaks break NNS cord-010027-r0tl01kq 436 15 , , , cord-010027-r0tl01kq 436 16 indicative indicative JJ cord-010027-r0tl01kq 436 17 for for IN cord-010027-r0tl01kq 436 18 SVs sv NNS cord-010027-r0tl01kq 436 19 , , , cord-010027-r0tl01kq 436 20 was be VBD cord-010027-r0tl01kq 436 21 determined determine VBN cord-010027-r0tl01kq 436 22 . . . cord-010027-r0tl01kq 437 1 The the DT cord-010027-r0tl01kq 437 2 mutation mutation NN cord-010027-r0tl01kq 437 3 status status NN cord-010027-r0tl01kq 437 4 of of IN cord-010027-r0tl01kq 437 5 commonly commonly RB cord-010027-r0tl01kq 437 6 affected affect VBN cord-010027-r0tl01kq 437 7 APC APC NNP cord-010027-r0tl01kq 437 8 , , , cord-010027-r0tl01kq 437 9 TP53 TP53 NNP cord-010027-r0tl01kq 437 10 , , , cord-010027-r0tl01kq 437 11 KRAS KRAS NNP cord-010027-r0tl01kq 437 12 , , , cord-010027-r0tl01kq 437 13 PIK3CA pik3ca NN cord-010027-r0tl01kq 437 14 , , , cord-010027-r0tl01kq 437 15 FBXW7 fbxw7 CD cord-010027-r0tl01kq 437 16 , , , cord-010027-r0tl01kq 437 17 SMAD4 smad4 NN cord-010027-r0tl01kq 437 18 , , , cord-010027-r0tl01kq 437 19 BRAF BRAF NNP cord-010027-r0tl01kq 437 20 and and CC cord-010027-r0tl01kq 437 21 NRAS NRAS NNP cord-010027-r0tl01kq 437 22 genes gene NNS cord-010027-r0tl01kq 437 23 was be VBD cord-010027-r0tl01kq 437 24 examined examine VBN cord-010027-r0tl01kq 437 25 for for IN cord-010027-r0tl01kq 437 26 60 60 CD cord-010027-r0tl01kq 437 27 samples sample NNS cord-010027-r0tl01kq 437 28 using use VBG cord-010027-r0tl01kq 437 29 targeted target VBN cord-010027-r0tl01kq 437 30 massive massive JJ cord-010027-r0tl01kq 437 31 parallel parallel JJ cord-010027-r0tl01kq 437 32 sequencing sequencing NN cord-010027-r0tl01kq 437 33 . . . cord-010027-r0tl01kq 438 1 Associations association NNS cord-010027-r0tl01kq 438 2 of of IN cord-010027-r0tl01kq 438 3 genomic genomic JJ cord-010027-r0tl01kq 438 4 aberrations aberration NNS cord-010027-r0tl01kq 438 5 with with IN cord-010027-r0tl01kq 438 6 disease disease NN cord-010027-r0tl01kq 438 7 - - HYPH cord-010027-r0tl01kq 438 8 free free JJ cord-010027-r0tl01kq 438 9 survival survival NN cord-010027-r0tl01kq 438 10 ( ( -LRB- cord-010027-r0tl01kq 438 11 DFS DFS NNP cord-010027-r0tl01kq 438 12 ) ) -RRB- cord-010027-r0tl01kq 438 13 rates rate NNS cord-010027-r0tl01kq 438 14 were be VBD cord-010027-r0tl01kq 438 15 explored explore VBN cord-010027-r0tl01kq 438 16 by by IN cord-010027-r0tl01kq 438 17 log log NN cord-010027-r0tl01kq 438 18 - - HYPH cord-010027-r0tl01kq 438 19 rank rank NN cord-010027-r0tl01kq 438 20 tests test NNS cord-010027-r0tl01kq 438 21 using use VBG cord-010027-r0tl01kq 438 22 10,000 10,000 CD cord-010027-r0tl01kq 438 23 permutations permutation NNS cord-010027-r0tl01kq 438 24 . . . cord-010027-r0tl01kq 439 1 Disease disease NN cord-010027-r0tl01kq 439 2 recurrence recurrence NN cord-010027-r0tl01kq 439 3 and and CC cord-010027-r0tl01kq 439 4 DFS DFS NNP cord-010027-r0tl01kq 439 5 rates rate NNS cord-010027-r0tl01kq 439 6 differed differ VBD cord-010027-r0tl01kq 439 7 significantly significantly RB cord-010027-r0tl01kq 439 8 for for IN cord-010027-r0tl01kq 439 9 several several JJ cord-010027-r0tl01kq 439 10 CNA CNA NNP cord-010027-r0tl01kq 439 11 - - HYPH cord-010027-r0tl01kq 439 12 regions region NNS cord-010027-r0tl01kq 439 13 ( ( -LRB- cord-010027-r0tl01kq 439 14 P<0.05 P<0.05 NNS cord-010027-r0tl01kq 439 15 ) ) -RRB- cord-010027-r0tl01kq 439 16 . . . cord-010027-r0tl01kq 440 1 A a DT cord-010027-r0tl01kq 440 2 total total NN cord-010027-r0tl01kq 440 3 of of IN cord-010027-r0tl01kq 440 4 267 267 CD cord-010027-r0tl01kq 440 5 genes gene NNS cord-010027-r0tl01kq 440 6 were be VBD cord-010027-r0tl01kq 440 7 recurrently recurrently RB cord-010027-r0tl01kq 440 8 affected affect VBN cord-010027-r0tl01kq 440 9 by by IN cord-010027-r0tl01kq 440 10 CNA CNA NNP cord-010027-r0tl01kq 440 11 - - HYPH cord-010027-r0tl01kq 440 12 associated associate VBN cord-010027-r0tl01kq 440 13 chromosomal chromosomal NN cord-010027-r0tl01kq 440 14 breaks break NNS cord-010027-r0tl01kq 440 15 ( ( -LRB- cord-010027-r0tl01kq 440 16 FDR<0.1 FDR<0.1 NNP cord-010027-r0tl01kq 440 17 ) ) -RRB- cord-010027-r0tl01kq 440 18 , , , cord-010027-r0tl01kq 440 19 among among IN cord-010027-r0tl01kq 440 20 which which WDT cord-010027-r0tl01kq 440 21 168 168 CD cord-010027-r0tl01kq 440 22 genes gene NNS cord-010027-r0tl01kq 440 23 ( ( -LRB- cord-010027-r0tl01kq 440 24 66 66 CD cord-010027-r0tl01kq 440 25 % % NN cord-010027-r0tl01kq 440 26 ) ) -RRB- cord-010027-r0tl01kq 440 27 that that WDT cord-010027-r0tl01kq 440 28 were be VBD cord-010027-r0tl01kq 440 29 also also RB cord-010027-r0tl01kq 440 30 identified identify VBN cord-010027-r0tl01kq 440 31 in in IN cord-010027-r0tl01kq 440 32 a a DT cord-010027-r0tl01kq 440 33 previously previously RB cord-010027-r0tl01kq 440 34 analysed analyse VBN cord-010027-r0tl01kq 440 35 cohort cohort NN cord-010027-r0tl01kq 440 36 of of IN cord-010027-r0tl01kq 440 37 352 352 CD cord-010027-r0tl01kq 440 38 metastatic metastatic JJ cord-010027-r0tl01kq 440 39 colorectal colorectal JJ cord-010027-r0tl01kq 440 40 cancers cancer NNS cord-010027-r0tl01kq 440 41 . . . cord-010027-r0tl01kq 441 1 Gene gene NN cord-010027-r0tl01kq 441 2 point point NN cord-010027-r0tl01kq 441 3 mutation mutation NN cord-010027-r0tl01kq 441 4 frequencies frequency NNS cord-010027-r0tl01kq 441 5 were be VBD cord-010027-r0tl01kq 441 6 in in IN cord-010027-r0tl01kq 441 7 concordance concordance NN cord-010027-r0tl01kq 441 8 with with IN cord-010027-r0tl01kq 441 9 literature literature NN cord-010027-r0tl01kq 441 10 . . . cord-010027-r0tl01kq 442 1 In in IN cord-010027-r0tl01kq 442 2 a a DT cord-010027-r0tl01kq 442 3 univariate univariate JJ cord-010027-r0tl01kq 442 4 analysis analysis NN cord-010027-r0tl01kq 442 5 , , , cord-010027-r0tl01kq 442 6 none none NN cord-010027-r0tl01kq 442 7 of of IN cord-010027-r0tl01kq 442 8 the the DT cord-010027-r0tl01kq 442 9 individual individual JJ cord-010027-r0tl01kq 442 10 mutated mutate VBN cord-010027-r0tl01kq 442 11 genes gene NNS cord-010027-r0tl01kq 442 12 appeared appear VBD cord-010027-r0tl01kq 442 13 to to TO cord-010027-r0tl01kq 442 14 be be VB cord-010027-r0tl01kq 442 15 significantly significantly RB cord-010027-r0tl01kq 442 16 associated associate VBN cord-010027-r0tl01kq 442 17 with with IN cord-010027-r0tl01kq 442 18 DFS DFS NNP cord-010027-r0tl01kq 442 19 . . . cord-010027-r0tl01kq 443 1 In in IN cord-010027-r0tl01kq 443 2 summary summary NN cord-010027-r0tl01kq 443 3 , , , cord-010027-r0tl01kq 443 4 several several JJ cord-010027-r0tl01kq 443 5 associations association NNS cord-010027-r0tl01kq 443 6 are be VBP cord-010027-r0tl01kq 443 7 found find VBN cord-010027-r0tl01kq 443 8 between between IN cord-010027-r0tl01kq 443 9 highly highly RB cord-010027-r0tl01kq 443 10 prevalent prevalent JJ cord-010027-r0tl01kq 443 11 genomic genomic JJ cord-010027-r0tl01kq 443 12 CNAs cna NNS cord-010027-r0tl01kq 443 13 and and CC cord-010027-r0tl01kq 443 14 disease disease NN cord-010027-r0tl01kq 443 15 recurrence recurrence NN cord-010027-r0tl01kq 443 16 in in IN cord-010027-r0tl01kq 443 17 this this DT cord-010027-r0tl01kq 443 18 cohort cohort NN cord-010027-r0tl01kq 443 19 of of IN cord-010027-r0tl01kq 443 20 MSS MSS NNP cord-010027-r0tl01kq 443 21 stage stage NN cord-010027-r0tl01kq 443 22 II II NNP cord-010027-r0tl01kq 443 23 and and CC cord-010027-r0tl01kq 443 24 III iii CD cord-010027-r0tl01kq 443 25 colon colon NN cord-010027-r0tl01kq 443 26 cancers cancer NNS cord-010027-r0tl01kq 443 27 . . . cord-010027-r0tl01kq 444 1 Further further RB cord-010027-r0tl01kq 444 2 in in IN cord-010027-r0tl01kq 444 3 - - HYPH cord-010027-r0tl01kq 444 4 depth depth NN cord-010027-r0tl01kq 444 5 analysis analysis NN cord-010027-r0tl01kq 444 6 is be VBZ cord-010027-r0tl01kq 444 7 required require VBN cord-010027-r0tl01kq 444 8 to to TO cord-010027-r0tl01kq 444 9 unravel unravel VB cord-010027-r0tl01kq 444 10 underlying underlie VBG cord-010027-r0tl01kq 444 11 biology biology NN cord-010027-r0tl01kq 444 12 that that WDT cord-010027-r0tl01kq 444 13 contributes contribute VBZ cord-010027-r0tl01kq 444 14 to to IN cord-010027-r0tl01kq 444 15 disease disease NN cord-010027-r0tl01kq 444 16 recurrence recurrence NN cord-010027-r0tl01kq 444 17 . . . cord-010027-r0tl01kq 445 1 KM KM NNP cord-010027-r0tl01kq 445 2 Sutton Sutton NNP cord-010027-r0tl01kq 445 3 1 1 CD cord-010027-r0tl01kq 445 4 ; ; : cord-010027-r0tl01kq 445 5 D D NNP cord-010027-r0tl01kq 445 6 Bottomley Bottomley NNP cord-010027-r0tl01kq 445 7 1 1 CD cord-010027-r0tl01kq 445 8 ; ; : cord-010027-r0tl01kq 445 9 D D NNP cord-010027-r0tl01kq 445 10 Morton Morton NNP cord-010027-r0tl01kq 445 11 2 2 CD cord-010027-r0tl01kq 445 12 ; ; : cord-010027-r0tl01kq 445 13 P P NNP cord-010027-r0tl01kq 445 14 Quirke Quirke NNP cord-010027-r0tl01kq 445 15 1 1 CD cord-010027-r0tl01kq 445 16 ; ; : cord-010027-r0tl01kq 445 17 P P NNP cord-010027-r0tl01kq 445 18 NP NP NNP cord-010027-r0tl01kq 445 19 West West NNP cord-010027-r0tl01kq 445 20 1 1 CD cord-010027-r0tl01kq 445 21 Accurate accurate JJ cord-010027-r0tl01kq 445 22 and and CC cord-010027-r0tl01kq 445 23 reliable reliable JJ cord-010027-r0tl01kq 445 24 methods method NNS cord-010027-r0tl01kq 445 25 for for IN cord-010027-r0tl01kq 445 26 assessing assess VBG cord-010027-r0tl01kq 445 27 the the DT cord-010027-r0tl01kq 445 28 molecular molecular JJ cord-010027-r0tl01kq 445 29 profile profile NN cord-010027-r0tl01kq 445 30 of of IN cord-010027-r0tl01kq 445 31 clinical clinical JJ cord-010027-r0tl01kq 445 32 tumour tumour NN cord-010027-r0tl01kq 445 33 samples sample NNS cord-010027-r0tl01kq 445 34 are be VBP cord-010027-r0tl01kq 445 35 important important JJ cord-010027-r0tl01kq 445 36 for for IN cord-010027-r0tl01kq 445 37 the the DT cord-010027-r0tl01kq 445 38 delivery delivery NN cord-010027-r0tl01kq 445 39 of of IN cord-010027-r0tl01kq 445 40 personalised personalised JJ cord-010027-r0tl01kq 445 41 medicine medicine NN cord-010027-r0tl01kq 445 42 . . . cord-010027-r0tl01kq 446 1 When when WRB cord-010027-r0tl01kq 446 2 adopting adopt VBG cord-010027-r0tl01kq 446 3 a a DT cord-010027-r0tl01kq 446 4 targeted target VBN cord-010027-r0tl01kq 446 5 amplicon amplicon NN cord-010027-r0tl01kq 446 6 sequencing sequencing NN cord-010027-r0tl01kq 446 7 method method NN cord-010027-r0tl01kq 446 8 in in IN cord-010027-r0tl01kq 446 9 combination combination NN cord-010027-r0tl01kq 446 10 with with IN cord-010027-r0tl01kq 446 11 next next JJ cord-010027-r0tl01kq 446 12 generation generation NN cord-010027-r0tl01kq 446 13 sequencing sequencing NN cord-010027-r0tl01kq 446 14 ( ( -LRB- cord-010027-r0tl01kq 446 15 NGS NGS NNP cord-010027-r0tl01kq 446 16 ) ) -RRB- cord-010027-r0tl01kq 446 17 , , , cord-010027-r0tl01kq 446 18 it -PRON- PRP cord-010027-r0tl01kq 446 19 is be VBZ cord-010027-r0tl01kq 446 20 ideal ideal JJ cord-010027-r0tl01kq 446 21 to to TO cord-010027-r0tl01kq 446 22 call call VB cord-010027-r0tl01kq 446 23 mutations mutation NNS cord-010027-r0tl01kq 446 24 against against IN cord-010027-r0tl01kq 446 25 a a DT cord-010027-r0tl01kq 446 26 control control NN cord-010027-r0tl01kq 446 27 sample sample NN cord-010027-r0tl01kq 446 28 to to TO cord-010027-r0tl01kq 446 29 enable enable VB cord-010027-r0tl01kq 446 30 artefacts artefact NNS cord-010027-r0tl01kq 446 31 to to TO cord-010027-r0tl01kq 446 32 be be VB cord-010027-r0tl01kq 446 33 removed remove VBN cord-010027-r0tl01kq 446 34 from from IN cord-010027-r0tl01kq 446 35 the the DT cord-010027-r0tl01kq 446 36 analysis analysis NN cord-010027-r0tl01kq 446 37 . . . cord-010027-r0tl01kq 447 1 Blood blood NN cord-010027-r0tl01kq 447 2 is be VBZ cord-010027-r0tl01kq 447 3 considered consider VBN cord-010027-r0tl01kq 447 4 the the DT cord-010027-r0tl01kq 447 5 gold gold JJ cord-010027-r0tl01kq 447 6 standard standard JJ cord-010027-r0tl01kq 447 7 control control NN cord-010027-r0tl01kq 447 8 but but CC cord-010027-r0tl01kq 447 9 may may MD cord-010027-r0tl01kq 447 10 not not RB cord-010027-r0tl01kq 447 11 always always RB cord-010027-r0tl01kq 447 12 be be VB cord-010027-r0tl01kq 447 13 available available JJ cord-010027-r0tl01kq 447 14 . . . cord-010027-r0tl01kq 448 1 We -PRON- PRP cord-010027-r0tl01kq 448 2 compared compare VBD cord-010027-r0tl01kq 448 3 the the DT cord-010027-r0tl01kq 448 4 use use NN cord-010027-r0tl01kq 448 5 of of IN cord-010027-r0tl01kq 448 6 histologically histologically RB cord-010027-r0tl01kq 448 7 normal normal JJ cord-010027-r0tl01kq 448 8 mucosa mucosa NN cord-010027-r0tl01kq 448 9 to to IN cord-010027-r0tl01kq 448 10 blood blood NN cord-010027-r0tl01kq 448 11 as as IN cord-010027-r0tl01kq 448 12 a a DT cord-010027-r0tl01kq 448 13 control control NN cord-010027-r0tl01kq 448 14 in in IN cord-010027-r0tl01kq 448 15 colon colon NN cord-010027-r0tl01kq 448 16 cancer cancer NN cord-010027-r0tl01kq 448 17 . . . cord-010027-r0tl01kq 449 1 We -PRON- PRP cord-010027-r0tl01kq 449 2 examined examine VBD cord-010027-r0tl01kq 449 3 mutations mutation NNS cord-010027-r0tl01kq 449 4 in in IN cord-010027-r0tl01kq 449 5 40 40 CD cord-010027-r0tl01kq 449 6 colon colon NN cord-010027-r0tl01kq 449 7 cancers cancer NNS cord-010027-r0tl01kq 449 8 from from IN cord-010027-r0tl01kq 449 9 the the DT cord-010027-r0tl01kq 449 10 NCRI NCRI NNP cord-010027-r0tl01kq 449 11 FOxTROT FOxTROT NNP cord-010027-r0tl01kq 449 12 trial trial NN cord-010027-r0tl01kq 449 13 using use VBG cord-010027-r0tl01kq 449 14 the the DT cord-010027-r0tl01kq 449 15 Fluidigm Fluidigm NNP cord-010027-r0tl01kq 449 16 Access Access NNP cord-010027-r0tl01kq 449 17 Array Array NNP cord-010027-r0tl01kq 449 18 for for IN cord-010027-r0tl01kq 449 19 NGS NGS NNP cord-010027-r0tl01kq 449 20 library library NN cord-010027-r0tl01kq 449 21 preparation preparation NN cord-010027-r0tl01kq 449 22 . . . cord-010027-r0tl01kq 450 1 We -PRON- PRP cord-010027-r0tl01kq 450 2 assessed assess VBD cord-010027-r0tl01kq 450 3 the the DT cord-010027-r0tl01kq 450 4 use use NN cord-010027-r0tl01kq 450 5 of of IN cord-010027-r0tl01kq 450 6 both both DT cord-010027-r0tl01kq 450 7 blood blood NN cord-010027-r0tl01kq 450 8 and and CC cord-010027-r0tl01kq 450 9 normal normal JJ cord-010027-r0tl01kq 450 10 colonic colonic JJ cord-010027-r0tl01kq 450 11 mucosa mucosa NN cord-010027-r0tl01kq 450 12 as as IN cord-010027-r0tl01kq 450 13 a a DT cord-010027-r0tl01kq 450 14 control control NN cord-010027-r0tl01kq 450 15 for for IN cord-010027-r0tl01kq 450 16 assessing assess VBG cord-010027-r0tl01kq 450 17 mutations mutation NNS cord-010027-r0tl01kq 450 18 in in IN cord-010027-r0tl01kq 450 19 11 11 CD cord-010027-r0tl01kq 450 20 genes gene NNS cord-010027-r0tl01kq 450 21 . . . cord-010027-r0tl01kq 451 1 All all DT cord-010027-r0tl01kq 451 2 samples sample NNS cord-010027-r0tl01kq 451 3 were be VBD cord-010027-r0tl01kq 451 4 tested test VBN cord-010027-r0tl01kq 451 5 in in IN cord-010027-r0tl01kq 451 6 duplicate duplicate NN cord-010027-r0tl01kq 451 7 . . . cord-010027-r0tl01kq 452 1 The the DT cord-010027-r0tl01kq 452 2 work work NN cord-010027-r0tl01kq 452 3 was be VBD cord-010027-r0tl01kq 452 4 partly partly RB cord-010027-r0tl01kq 452 5 funded fund VBN cord-010027-r0tl01kq 452 6 by by IN cord-010027-r0tl01kq 452 7 a a DT cord-010027-r0tl01kq 452 8 PathSoc PathSoc NNP cord-010027-r0tl01kq 452 9 Career Career NNP cord-010027-r0tl01kq 452 10 Development Development NNP cord-010027-r0tl01kq 452 11 Fellowship Fellowship NNP cord-010027-r0tl01kq 452 12 and and CC cord-010027-r0tl01kq 452 13 is be VBZ cord-010027-r0tl01kq 452 14 presented present VBN cord-010027-r0tl01kq 452 15 on on IN cord-010027-r0tl01kq 452 16 behalf behalf NN cord-010027-r0tl01kq 452 17 of of IN cord-010027-r0tl01kq 452 18 the the DT cord-010027-r0tl01kq 452 19 FOxTROT FOxTROT NNP cord-010027-r0tl01kq 452 20 Collaborative Collaborative NNP cord-010027-r0tl01kq 452 21 Group Group NNP cord-010027-r0tl01kq 452 22 . . . cord-010027-r0tl01kq 453 1 Mutation mutation NN cord-010027-r0tl01kq 453 2 calls call NNS cord-010027-r0tl01kq 453 3 made make VBN cord-010027-r0tl01kq 453 4 using use VBG cord-010027-r0tl01kq 453 5 normal normal JJ cord-010027-r0tl01kq 453 6 mucosa mucosa NN cord-010027-r0tl01kq 453 7 as as IN cord-010027-r0tl01kq 453 8 a a DT cord-010027-r0tl01kq 453 9 control control NN cord-010027-r0tl01kq 453 10 compared compare VBN cord-010027-r0tl01kq 453 11 to to IN cord-010027-r0tl01kq 453 12 blood blood NN cord-010027-r0tl01kq 453 13 were be VBD cord-010027-r0tl01kq 453 14 in in IN cord-010027-r0tl01kq 453 15 good good JJ cord-010027-r0tl01kq 453 16 agreement agreement NN cord-010027-r0tl01kq 453 17 ; ; : cord-010027-r0tl01kq 453 18 a a DT cord-010027-r0tl01kq 453 19 Mathew Mathew NNP cord-010027-r0tl01kq 453 20 's 's POS cord-010027-r0tl01kq 453 21 Correlation Correlation NNP cord-010027-r0tl01kq 453 22 Coefficient Coefficient NNP cord-010027-r0tl01kq 453 23 above above IN cord-010027-r0tl01kq 453 24 0.7 0.7 CD cord-010027-r0tl01kq 453 25 was be VBD cord-010027-r0tl01kq 453 26 seen see VBN cord-010027-r0tl01kq 453 27 for for IN cord-010027-r0tl01kq 453 28 all all DT cord-010027-r0tl01kq 453 29 of of IN cord-010027-r0tl01kq 453 30 the the DT cord-010027-r0tl01kq 453 31 genes gene NNS cord-010027-r0tl01kq 453 32 where where WRB cord-010027-r0tl01kq 453 33 agreement agreement NN cord-010027-r0tl01kq 453 34 could could MD cord-010027-r0tl01kq 453 35 be be VB cord-010027-r0tl01kq 453 36 assessed assess VBN cord-010027-r0tl01kq 453 37 . . . cord-010027-r0tl01kq 454 1 We -PRON- PRP cord-010027-r0tl01kq 454 2 found find VBD cord-010027-r0tl01kq 454 3 that that IN cord-010027-r0tl01kq 454 4 false false JJ cord-010027-r0tl01kq 454 5 positive positive JJ cord-010027-r0tl01kq 454 6 mutations mutation NNS cord-010027-r0tl01kq 454 7 were be VBD cord-010027-r0tl01kq 454 8 due due JJ cord-010027-r0tl01kq 454 9 to to IN cord-010027-r0tl01kq 454 10 poorer poor JJR cord-010027-r0tl01kq 454 11 amplification amplification NN cord-010027-r0tl01kq 454 12 of of IN cord-010027-r0tl01kq 454 13 the the DT cord-010027-r0tl01kq 454 14 normal normal JJ cord-010027-r0tl01kq 454 15 mucosa mucosa JJ cord-010027-r0tl01kq 454 16 samples sample NNS cord-010027-r0tl01kq 454 17 and and CC cord-010027-r0tl01kq 454 18 false false JJ cord-010027-r0tl01kq 454 19 negatives negative NNS cord-010027-r0tl01kq 454 20 were be VBD cord-010027-r0tl01kq 454 21 due due JJ cord-010027-r0tl01kq 454 22 to to IN cord-010027-r0tl01kq 454 23 mutation mutation NN cord-010027-r0tl01kq 454 24 calls call NNS cord-010027-r0tl01kq 454 25 in in IN cord-010027-r0tl01kq 454 26 the the DT cord-010027-r0tl01kq 454 27 normal normal JJ cord-010027-r0tl01kq 454 28 mucosa mucosa NN cord-010027-r0tl01kq 454 29 . . . cord-010027-r0tl01kq 455 1 Overall overall RB cord-010027-r0tl01kq 455 2 we -PRON- PRP cord-010027-r0tl01kq 455 3 found find VBD cord-010027-r0tl01kq 455 4 that that IN cord-010027-r0tl01kq 455 5 when when WRB cord-010027-r0tl01kq 455 6 assessing assess VBG cord-010027-r0tl01kq 455 7 mutations mutation NNS cord-010027-r0tl01kq 455 8 in in IN cord-010027-r0tl01kq 455 9 hotspot hotspot NN cord-010027-r0tl01kq 455 10 oncogenes oncogene NNS cord-010027-r0tl01kq 455 11 , , , cord-010027-r0tl01kq 455 12 testing test VBG cord-010027-r0tl01kq 455 13 in in IN cord-010027-r0tl01kq 455 14 duplicate duplicate NN cord-010027-r0tl01kq 455 15 and and CC cord-010027-r0tl01kq 455 16 the the DT cord-010027-r0tl01kq 455 17 use use NN cord-010027-r0tl01kq 455 18 of of IN cord-010027-r0tl01kq 455 19 a a DT cord-010027-r0tl01kq 455 20 normal normal JJ cord-010027-r0tl01kq 455 21 control control NN cord-010027-r0tl01kq 455 22 tissue tissue NN cord-010027-r0tl01kq 455 23 is be VBZ cord-010027-r0tl01kq 455 24 not not RB cord-010027-r0tl01kq 455 25 required require VBN cord-010027-r0tl01kq 455 26 to to TO cord-010027-r0tl01kq 455 27 make make VB cord-010027-r0tl01kq 455 28 mutation mutation NN cord-010027-r0tl01kq 455 29 calls call NNS cord-010027-r0tl01kq 455 30 . . . cord-010027-r0tl01kq 456 1 However however RB cord-010027-r0tl01kq 456 2 , , , cord-010027-r0tl01kq 456 3 where where WRB cord-010027-r0tl01kq 456 4 a a DT cord-010027-r0tl01kq 456 5 normal normal JJ cord-010027-r0tl01kq 456 6 control control NN cord-010027-r0tl01kq 456 7 is be VBZ cord-010027-r0tl01kq 456 8 required require VBN cord-010027-r0tl01kq 456 9 , , , cord-010027-r0tl01kq 456 10 normal normal JJ cord-010027-r0tl01kq 456 11 mucosa mucosa RB cord-010027-r0tl01kq 456 12 from from IN cord-010027-r0tl01kq 456 13 the the DT cord-010027-r0tl01kq 456 14 resection resection NN cord-010027-r0tl01kq 456 15 margin margin NN cord-010027-r0tl01kq 456 16 is be VBZ cord-010027-r0tl01kq 456 17 a a DT cord-010027-r0tl01kq 456 18 suitable suitable JJ cord-010027-r0tl01kq 456 19 alternative alternative NN cord-010027-r0tl01kq 456 20 to to IN cord-010027-r0tl01kq 456 21 blood blood NN cord-010027-r0tl01kq 456 22 where where WRB cord-010027-r0tl01kq 456 23 it -PRON- PRP cord-010027-r0tl01kq 456 24 is be VBZ cord-010027-r0tl01kq 456 25 not not RB cord-010027-r0tl01kq 456 26 available available JJ cord-010027-r0tl01kq 456 27 . . . cord-010027-r0tl01kq 457 1 We -PRON- PRP cord-010027-r0tl01kq 457 2 report report VBP cord-010027-r0tl01kq 457 3 a a DT cord-010027-r0tl01kq 457 4 series series NN cord-010027-r0tl01kq 457 5 of of IN cord-010027-r0tl01kq 457 6 four four CD cord-010027-r0tl01kq 457 7 unusual unusual JJ cord-010027-r0tl01kq 457 8 ovarian ovarian NN cord-010027-r0tl01kq 457 9 or or CC cord-010027-r0tl01kq 457 10 extraovarian extraovarian JJ cord-010027-r0tl01kq 457 11 neoplasms neoplasm NNS cord-010027-r0tl01kq 457 12 composed compose VBN cord-010027-r0tl01kq 457 13 of of IN cord-010027-r0tl01kq 457 14 an an DT cord-010027-r0tl01kq 457 15 admixture admixture NN cord-010027-r0tl01kq 457 16 of of IN cord-010027-r0tl01kq 457 17 adenosarcoma adenosarcoma NNS cord-010027-r0tl01kq 457 18 and and CC cord-010027-r0tl01kq 457 19 a a DT cord-010027-r0tl01kq 457 20 predominant predominant JJ cord-010027-r0tl01kq 457 21 component component NN cord-010027-r0tl01kq 457 22 comprising comprise VBG cord-010027-r0tl01kq 457 23 a a DT cord-010027-r0tl01kq 457 24 sex sex NN cord-010027-r0tl01kq 457 25 cord cord NN cord-010027-r0tl01kq 457 26 tumour tumour NN cord-010027-r0tl01kq 457 27 . . . cord-010027-r0tl01kq 458 1 The the DT cord-010027-r0tl01kq 458 2 neoplasms neoplasm NNS cord-010027-r0tl01kq 458 3 occurred occur VBD cord-010027-r0tl01kq 458 4 in in IN cord-010027-r0tl01kq 458 5 women woman NNS cord-010027-r0tl01kq 458 6 aged age VBN cord-010027-r0tl01kq 458 7 50 50 CD cord-010027-r0tl01kq 458 8 to to IN cord-010027-r0tl01kq 458 9 69 69 CD cord-010027-r0tl01kq 458 10 . . . cord-010027-r0tl01kq 459 1 Three three CD cord-010027-r0tl01kq 459 2 cases case NNS cord-010027-r0tl01kq 459 3 arose arise VBD cord-010027-r0tl01kq 459 4 within within IN cord-010027-r0tl01kq 459 5 the the DT cord-010027-r0tl01kq 459 6 ovary ovary NN cord-010027-r0tl01kq 459 7 and and CC cord-010027-r0tl01kq 459 8 one one CD cord-010027-r0tl01kq 459 9 was be VBD cord-010027-r0tl01kq 459 10 extraovarian extraovarian JJ cord-010027-r0tl01kq 459 11 ( ( -LRB- cord-010027-r0tl01kq 459 12 pelvis pelvi NNS cord-010027-r0tl01kq 459 13 and and CC cord-010027-r0tl01kq 459 14 abdomen abdomen NN cord-010027-r0tl01kq 459 15 ) ) -RRB- cord-010027-r0tl01kq 459 16 in in IN cord-010027-r0tl01kq 459 17 location location NN cord-010027-r0tl01kq 459 18 . . . cord-010027-r0tl01kq 460 1 In in IN cord-010027-r0tl01kq 460 2 all all DT cord-010027-r0tl01kq 460 3 four four CD cord-010027-r0tl01kq 460 4 cases case NNS cord-010027-r0tl01kq 460 5 , , , cord-010027-r0tl01kq 460 6 there there EX cord-010027-r0tl01kq 460 7 were be VBD cord-010027-r0tl01kq 460 8 minor minor JJ cord-010027-r0tl01kq 460 9 areas area NNS cord-010027-r0tl01kq 460 10 with with IN cord-010027-r0tl01kq 460 11 morphological morphological JJ cord-010027-r0tl01kq 460 12 features feature NNS cord-010027-r0tl01kq 460 13 of of IN cord-010027-r0tl01kq 460 14 adenosarcoma adenosarcoma NNS cord-010027-r0tl01kq 460 15 with with IN cord-010027-r0tl01kq 460 16 a a DT cord-010027-r0tl01kq 460 17 phyllodes phyllodes NN cord-010027-r0tl01kq 460 18 - - HYPH cord-010027-r0tl01kq 460 19 like like JJ cord-010027-r0tl01kq 460 20 architecture architecture NN cord-010027-r0tl01kq 460 21 and and CC cord-010027-r0tl01kq 460 22 periglandular periglandular NNP cord-010027-r0tl01kq 460 23 increased increase VBD cord-010027-r0tl01kq 460 24 cellularity cellularity NN cord-010027-r0tl01kq 460 25 with with IN cord-010027-r0tl01kq 460 26 mitotic mitotic JJ cord-010027-r0tl01kq 460 27 figures figure NNS cord-010027-r0tl01kq 460 28 . . . cord-010027-r0tl01kq 461 1 In in IN cord-010027-r0tl01kq 461 2 two two CD cord-010027-r0tl01kq 461 3 cases case NNS cord-010027-r0tl01kq 461 4 , , , cord-010027-r0tl01kq 461 5 the the DT cord-010027-r0tl01kq 461 6 stromal stromal JJ cord-010027-r0tl01kq 461 7 component component NN cord-010027-r0tl01kq 461 8 was be VBD cord-010027-r0tl01kq 461 9 morphologically morphologically RB cord-010027-r0tl01kq 461 10 in in IN cord-010027-r0tl01kq 461 11 keeping keep VBG cord-010027-r0tl01kq 461 12 with with IN cord-010027-r0tl01kq 461 13 a a DT cord-010027-r0tl01kq 461 14 juvenile juvenile JJ cord-010027-r0tl01kq 461 15 granulosa granulosa JJ cord-010027-r0tl01kq 461 16 cell cell NN cord-010027-r0tl01kq 461 17 tumour tumour NN cord-010027-r0tl01kq 461 18 . . . cord-010027-r0tl01kq 462 1 In in IN cord-010027-r0tl01kq 462 2 one one CD cord-010027-r0tl01kq 462 3 case case NN cord-010027-r0tl01kq 462 4 , , , cord-010027-r0tl01kq 462 5 the the DT cord-010027-r0tl01kq 462 6 stromal stromal JJ cord-010027-r0tl01kq 462 7 component component NN cord-010027-r0tl01kq 462 8 had have VBD cord-010027-r0tl01kq 462 9 some some DT cord-010027-r0tl01kq 462 10 features feature NNS cord-010027-r0tl01kq 462 11 of of IN cord-010027-r0tl01kq 462 12 both both DT cord-010027-r0tl01kq 462 13 adult adult NN cord-010027-r0tl01kq 462 14 granulosa granulosa JJ cord-010027-r0tl01kq 462 15 cell cell NN cord-010027-r0tl01kq 462 16 tumour tumour NN cord-010027-r0tl01kq 462 17 and and CC cord-010027-r0tl01kq 462 18 Sertoli sertoli JJ cord-010027-r0tl01kq 462 19 cell cell NN cord-010027-r0tl01kq 462 20 tumour tumour NN cord-010027-r0tl01kq 462 21 within within IN cord-010027-r0tl01kq 462 22 a a DT cord-010027-r0tl01kq 462 23 fibromatous fibromatous JJ cord-010027-r0tl01kq 462 24 background background NN cord-010027-r0tl01kq 462 25 . . . cord-010027-r0tl01kq 463 1 The the DT cord-010027-r0tl01kq 463 2 fourth fourth JJ cord-010027-r0tl01kq 463 3 case case NN cord-010027-r0tl01kq 463 4 morphologically morphologically RB cord-010027-r0tl01kq 463 5 could could MD cord-010027-r0tl01kq 463 6 not not RB cord-010027-r0tl01kq 463 7 be be VB cord-010027-r0tl01kq 463 8 categorised categorise VBN cord-010027-r0tl01kq 463 9 as as IN cord-010027-r0tl01kq 463 10 any any DT cord-010027-r0tl01kq 463 11 of of IN cord-010027-r0tl01kq 463 12 the the DT cord-010027-r0tl01kq 463 13 usual usual JJ cord-010027-r0tl01kq 463 14 types type NNS cord-010027-r0tl01kq 463 15 of of IN cord-010027-r0tl01kq 463 16 ovarian ovarian JJ cord-010027-r0tl01kq 463 17 sex sex NN cord-010027-r0tl01kq 463 18 cord cord NN cord-010027-r0tl01kq 463 19 tumour tumour NN cord-010027-r0tl01kq 463 20 and and CC cord-010027-r0tl01kq 463 21 was be VBD cord-010027-r0tl01kq 463 22 categorised categorise VBN cord-010027-r0tl01kq 463 23 as as IN cord-010027-r0tl01kq 463 24 an an DT cord-010027-r0tl01kq 463 25 unclassifiable unclassifiable JJ cord-010027-r0tl01kq 463 26 sex sex NN cord-010027-r0tl01kq 463 27 cord cord NN cord-010027-r0tl01kq 463 28 tumour tumour NN cord-010027-r0tl01kq 463 29 . . . cord-010027-r0tl01kq 464 1 In in IN cord-010027-r0tl01kq 464 2 all all DT cord-010027-r0tl01kq 464 3 four four CD cord-010027-r0tl01kq 464 4 cases case NNS cord-010027-r0tl01kq 464 5 , , , cord-010027-r0tl01kq 464 6 there there EX cord-010027-r0tl01kq 464 7 was be VBD cord-010027-r0tl01kq 464 8 immunohistochemical immunohistochemical JJ cord-010027-r0tl01kq 464 9 evidence evidence NN cord-010027-r0tl01kq 464 10 of of IN cord-010027-r0tl01kq 464 11 sex sex NN cord-010027-r0tl01kq 464 12 cord cord NN cord-010027-r0tl01kq 464 13 differentiation differentiation NN cord-010027-r0tl01kq 464 14 . . . cord-010027-r0tl01kq 465 1 In in IN cord-010027-r0tl01kq 465 2 each each DT cord-010027-r0tl01kq 465 3 case case NN cord-010027-r0tl01kq 465 4 , , , cord-010027-r0tl01kq 465 5 we -PRON- PRP cord-010027-r0tl01kq 465 6 propose propose VBP cord-010027-r0tl01kq 465 7 that that IN cord-010027-r0tl01kq 465 8 the the DT cord-010027-r0tl01kq 465 9 sex sex NN cord-010027-r0tl01kq 465 10 cord cord NN cord-010027-r0tl01kq 465 11 tumour tumour NN cord-010027-r0tl01kq 465 12 arose arise VBD cord-010027-r0tl01kq 465 13 from from IN cord-010027-r0tl01kq 465 14 a a DT cord-010027-r0tl01kq 465 15 pre pre JJ cord-010027-r0tl01kq 465 16 - - JJ cord-010027-r0tl01kq 465 17 existing existing JJ cord-010027-r0tl01kq 465 18 adenosarcoma adenosarcoma NNS cord-010027-r0tl01kq 465 19 thus thus RB cord-010027-r0tl01kq 465 20 representing represent VBG cord-010027-r0tl01kq 465 21 an an DT cord-010027-r0tl01kq 465 22 unusual unusual JJ cord-010027-r0tl01kq 465 23 form form NN cord-010027-r0tl01kq 465 24 of of IN cord-010027-r0tl01kq 465 25 sarcomatous sarcomatous JJ cord-010027-r0tl01kq 465 26 overgrowth overgrowth NN cord-010027-r0tl01kq 465 27 of of IN cord-010027-r0tl01kq 465 28 sex sex NN cord-010027-r0tl01kq 465 29 cord cord NN cord-010027-r0tl01kq 465 30 elements element NNS cord-010027-r0tl01kq 465 31 which which WDT cord-010027-r0tl01kq 465 32 can can MD cord-010027-r0tl01kq 465 33 occur occur VB cord-010027-r0tl01kq 465 34 within within IN cord-010027-r0tl01kq 465 35 adenosarcomas adenosarcomas NNP cord-010027-r0tl01kq 465 36 . . . cord-010027-r0tl01kq 466 1 This this DT cord-010027-r0tl01kq 466 2 phenomenon phenomenon NN cord-010027-r0tl01kq 466 3 is be VBZ cord-010027-r0tl01kq 466 4 not not RB cord-010027-r0tl01kq 466 5 well well RB cord-010027-r0tl01kq 466 6 described describe VBN cord-010027-r0tl01kq 466 7 in in IN cord-010027-r0tl01kq 466 8 the the DT cord-010027-r0tl01kq 466 9 literature literature NN cord-010027-r0tl01kq 466 10 . . . cord-010027-r0tl01kq 467 1 Background background NN cord-010027-r0tl01kq 467 2 : : : cord-010027-r0tl01kq 468 1 Human human JJ cord-010027-r0tl01kq 468 2 epididymis epididymis NN cord-010027-r0tl01kq 468 3 protein protein NN cord-010027-r0tl01kq 468 4 4 4 CD cord-010027-r0tl01kq 468 5 ( ( -LRB- cord-010027-r0tl01kq 468 6 HE4 HE4 NNP cord-010027-r0tl01kq 468 7 ) ) -RRB- cord-010027-r0tl01kq 468 8 is be VBZ cord-010027-r0tl01kq 468 9 a a DT cord-010027-r0tl01kq 468 10 secreted secrete VBN cord-010027-r0tl01kq 468 11 protein protein NN cord-010027-r0tl01kq 468 12 that that WDT cord-010027-r0tl01kq 468 13 is be VBZ cord-010027-r0tl01kq 468 14 overexpressed overexpresse VBN cord-010027-r0tl01kq 468 15 in in IN cord-010027-r0tl01kq 468 16 some some DT cord-010027-r0tl01kq 468 17 cancers cancer NNS cord-010027-r0tl01kq 468 18 . . . cord-010027-r0tl01kq 469 1 HE4 HE4 NNP cord-010027-r0tl01kq 469 2 is be VBZ cord-010027-r0tl01kq 469 3 emerging emerge VBG cord-010027-r0tl01kq 469 4 as as IN cord-010027-r0tl01kq 469 5 a a DT cord-010027-r0tl01kq 469 6 useful useful JJ cord-010027-r0tl01kq 469 7 biomarker biomarker NN cord-010027-r0tl01kq 469 8 in in IN cord-010027-r0tl01kq 469 9 diagnosis diagnosis NN cord-010027-r0tl01kq 469 10 and and CC cord-010027-r0tl01kq 469 11 follow follow NN cord-010027-r0tl01kq 469 12 - - HYPH cord-010027-r0tl01kq 469 13 up up NN cord-010027-r0tl01kq 469 14 of of IN cord-010027-r0tl01kq 469 15 endometrial endometrial JJ cord-010027-r0tl01kq 469 16 cancers cancer NNS cord-010027-r0tl01kq 469 17 . . . cord-010027-r0tl01kq 470 1 The the DT cord-010027-r0tl01kq 470 2 aim aim NN cord-010027-r0tl01kq 470 3 of of IN cord-010027-r0tl01kq 470 4 this this DT cord-010027-r0tl01kq 470 5 study study NN cord-010027-r0tl01kq 470 6 was be VBD cord-010027-r0tl01kq 470 7 to to TO cord-010027-r0tl01kq 470 8 evaluate evaluate VB cord-010027-r0tl01kq 470 9 the the DT cord-010027-r0tl01kq 470 10 potential potential JJ cord-010027-r0tl01kq 470 11 role role NN cord-010027-r0tl01kq 470 12 of of IN cord-010027-r0tl01kq 470 13 serum serum NN cord-010027-r0tl01kq 470 14 HE4 HE4 NNP cord-010027-r0tl01kq 470 15 in in IN cord-010027-r0tl01kq 470 16 the the DT cord-010027-r0tl01kq 470 17 diagnosis diagnosis NN cord-010027-r0tl01kq 470 18 and and CC cord-010027-r0tl01kq 470 19 management management NN cord-010027-r0tl01kq 470 20 of of IN cord-010027-r0tl01kq 470 21 endometrial endometrial JJ cord-010027-r0tl01kq 470 22 cancer cancer NN cord-010027-r0tl01kq 470 23 . . . cord-010027-r0tl01kq 471 1 Methods method NNS cord-010027-r0tl01kq 471 2 : : : cord-010027-r0tl01kq 471 3 Patients patient NNS cord-010027-r0tl01kq 471 4 undergoing undergo VBG cord-010027-r0tl01kq 471 5 surgery surgery NN cord-010027-r0tl01kq 471 6 for for IN cord-010027-r0tl01kq 471 7 endometrial endometrial JJ cord-010027-r0tl01kq 471 8 disease disease NN cord-010027-r0tl01kq 471 9 were be VBD cord-010027-r0tl01kq 471 10 recruited recruit VBN cord-010027-r0tl01kq 471 11 into into IN cord-010027-r0tl01kq 471 12 this this DT cord-010027-r0tl01kq 471 13 study study NN cord-010027-r0tl01kq 471 14 and and CC cord-010027-r0tl01kq 471 15 had have VBD cord-010027-r0tl01kq 471 16 pre pre JJ cord-010027-r0tl01kq 471 17 - - JJ cord-010027-r0tl01kq 471 18 operative operative JJ cord-010027-r0tl01kq 471 19 serum serum NN cord-010027-r0tl01kq 471 20 samples sample NNS cord-010027-r0tl01kq 471 21 taken take VBN cord-010027-r0tl01kq 471 22 , , , cord-010027-r0tl01kq 471 23 n=157 n=157 ADD cord-010027-r0tl01kq 471 24 . . . cord-010027-r0tl01kq 472 1 Demographic demographic JJ cord-010027-r0tl01kq 472 2 , , , cord-010027-r0tl01kq 472 3 clinical clinical JJ cord-010027-r0tl01kq 472 4 , , , cord-010027-r0tl01kq 472 5 radiological radiological JJ cord-010027-r0tl01kq 472 6 and and CC cord-010027-r0tl01kq 472 7 laboratory laboratory NN cord-010027-r0tl01kq 472 8 data datum NNS cord-010027-r0tl01kq 472 9 were be VBD cord-010027-r0tl01kq 472 10 reviewed review VBN cord-010027-r0tl01kq 472 11 . . . cord-010027-r0tl01kq 473 1 HE4 HE4 NNP cord-010027-r0tl01kq 473 2 and and CC cord-010027-r0tl01kq 473 3 CA125 ca125 NN cord-010027-r0tl01kq 473 4 serum serum NN cord-010027-r0tl01kq 473 5 levels level NNS cord-010027-r0tl01kq 473 6 were be VBD cord-010027-r0tl01kq 473 7 analysed analyse VBN cord-010027-r0tl01kq 473 8 using use VBG cord-010027-r0tl01kq 473 9 the the DT cord-010027-r0tl01kq 473 10 Fujirebio Fujirebio NNP cord-010027-r0tl01kq 473 11 Diagnostic Diagnostic NNP cord-010027-r0tl01kq 473 12 ELISA ELISA NNP cord-010027-r0tl01kq 473 13 Kits kit NNS cord-010027-r0tl01kq 473 14 and and CC cord-010027-r0tl01kq 473 15 results result NNS cord-010027-r0tl01kq 473 16 correlated correlate VBN cord-010027-r0tl01kq 473 17 with with IN cord-010027-r0tl01kq 473 18 clinicopathological clinicopathological JJ cord-010027-r0tl01kq 473 19 details detail NNS cord-010027-r0tl01kq 473 20 . . . cord-010027-r0tl01kq 474 1 Standard standard JJ cord-010027-r0tl01kq 474 2 cut cut VB cord-010027-r0tl01kq 474 3 - - HYPH cord-010027-r0tl01kq 474 4 off off RP cord-010027-r0tl01kq 474 5 points point NNS cord-010027-r0tl01kq 474 6 of of IN cord-010027-r0tl01kq 474 7 70 70 CD cord-010027-r0tl01kq 474 8 pmol pmol NN cord-010027-r0tl01kq 474 9 / / SYM cord-010027-r0tl01kq 474 10 L l NN cord-010027-r0tl01kq 474 11 for for IN cord-010027-r0tl01kq 474 12 HE4 HE4 NNP cord-010027-r0tl01kq 474 13 and and CC cord-010027-r0tl01kq 474 14 35 35 CD cord-010027-r0tl01kq 474 15 U U NNP cord-010027-r0tl01kq 474 16 / / SYM cord-010027-r0tl01kq 474 17 ml ml XX cord-010027-r0tl01kq 474 18 for for IN cord-010027-r0tl01kq 474 19 CA125 ca125 NN cord-010027-r0tl01kq 474 20 were be VBD cord-010027-r0tl01kq 474 21 used use VBN cord-010027-r0tl01kq 474 22 . . . cord-010027-r0tl01kq 475 1 Results result NNS cord-010027-r0tl01kq 475 2 : : : cord-010027-r0tl01kq 475 3 HE4 HE4 NNP cord-010027-r0tl01kq 475 4 showed show VBD cord-010027-r0tl01kq 475 5 a a DT cord-010027-r0tl01kq 475 6 sensitivity sensitivity NN cord-010027-r0tl01kq 475 7 of of IN cord-010027-r0tl01kq 475 8 64 64 CD cord-010027-r0tl01kq 475 9 % % NN cord-010027-r0tl01kq 475 10 and and CC cord-010027-r0tl01kq 475 11 specificity specificity NN cord-010027-r0tl01kq 475 12 of of IN cord-010027-r0tl01kq 475 13 97.50 97.50 CD cord-010027-r0tl01kq 475 14 % % NN cord-010027-r0tl01kq 475 15 for for IN cord-010027-r0tl01kq 475 16 detection detection NN cord-010027-r0tl01kq 475 17 of of IN cord-010027-r0tl01kq 475 18 endometrial endometrial JJ cord-010027-r0tl01kq 475 19 cancer cancer NN cord-010027-r0tl01kq 475 20 . . . cord-010027-r0tl01kq 476 1 CA125 CA125 NNP cord-010027-r0tl01kq 476 2 had have VBD cord-010027-r0tl01kq 476 3 a a DT cord-010027-r0tl01kq 476 4 very very RB cord-010027-r0tl01kq 476 5 low low JJ cord-010027-r0tl01kq 476 6 sensitivity sensitivity NN cord-010027-r0tl01kq 476 7 of of IN cord-010027-r0tl01kq 476 8 14 14 CD cord-010027-r0tl01kq 476 9 % % NN cord-010027-r0tl01kq 476 10 for for IN cord-010027-r0tl01kq 476 11 endometrial endometrial JJ cord-010027-r0tl01kq 476 12 cancer cancer NN cord-010027-r0tl01kq 476 13 diagnosis diagnosis NN cord-010027-r0tl01kq 476 14 . . . cord-010027-r0tl01kq 477 1 HE4 HE4 NNP cord-010027-r0tl01kq 477 2 was be VBD cord-010027-r0tl01kq 477 3 elevated elevate VBN cord-010027-r0tl01kq 477 4 in in IN cord-010027-r0tl01kq 477 5 all all DT cord-010027-r0tl01kq 477 6 stages stage NNS cord-010027-r0tl01kq 477 7 of of IN cord-010027-r0tl01kq 477 8 endometrial endometrial JJ cord-010027-r0tl01kq 477 9 cancer cancer NN cord-010027-r0tl01kq 477 10 and and CC cord-010027-r0tl01kq 477 11 demonstrated demonstrate VBD cord-010027-r0tl01kq 477 12 the the DT cord-010027-r0tl01kq 477 13 ability ability NN cord-010027-r0tl01kq 477 14 to to TO cord-010027-r0tl01kq 477 15 distinguish distinguish VB cord-010027-r0tl01kq 477 16 between between IN cord-010027-r0tl01kq 477 17 benign benign JJ cord-010027-r0tl01kq 477 18 and and CC cord-010027-r0tl01kq 477 19 malignant malignant JJ cord-010027-r0tl01kq 477 20 groups group NNS cord-010027-r0tl01kq 477 21 . . . cord-010027-r0tl01kq 478 1 HE4 HE4 NNP cord-010027-r0tl01kq 478 2 also also RB cord-010027-r0tl01kq 478 3 provided provide VBD cord-010027-r0tl01kq 478 4 information information NN cord-010027-r0tl01kq 478 5 about about IN cord-010027-r0tl01kq 478 6 myometrial myometrial JJ cord-010027-r0tl01kq 478 7 space space NN cord-010027-r0tl01kq 478 8 invasion invasion NN cord-010027-r0tl01kq 478 9 . . . cord-010027-r0tl01kq 479 1 Conclusion conclusion NN cord-010027-r0tl01kq 479 2 : : : cord-010027-r0tl01kq 479 3 HE4 HE4 NNP cord-010027-r0tl01kq 479 4 has have VBZ cord-010027-r0tl01kq 479 5 a a DT cord-010027-r0tl01kq 479 6 role role NN cord-010027-r0tl01kq 479 7 in in IN cord-010027-r0tl01kq 479 8 endometrial endometrial JJ cord-010027-r0tl01kq 479 9 cancer cancer NN cord-010027-r0tl01kq 479 10 diagnosis diagnosis NN cord-010027-r0tl01kq 479 11 and and CC cord-010027-r0tl01kq 479 12 prognosis prognosis NN cord-010027-r0tl01kq 479 13 and and CC cord-010027-r0tl01kq 479 14 has have VBZ cord-010027-r0tl01kq 479 15 the the DT cord-010027-r0tl01kq 479 16 potential potential NN cord-010027-r0tl01kq 479 17 to to TO cord-010027-r0tl01kq 479 18 be be VB cord-010027-r0tl01kq 479 19 used use VBN cord-010027-r0tl01kq 479 20 in in IN cord-010027-r0tl01kq 479 21 a a DT cord-010027-r0tl01kq 479 22 screening screening NN cord-010027-r0tl01kq 479 23 setting setting NN cord-010027-r0tl01kq 479 24 or or CC cord-010027-r0tl01kq 479 25 as as IN cord-010027-r0tl01kq 479 26 a a DT cord-010027-r0tl01kq 479 27 triage triage NN cord-010027-r0tl01kq 479 28 marker marker NN cord-010027-r0tl01kq 479 29 in in IN cord-010027-r0tl01kq 479 30 the the DT cord-010027-r0tl01kq 479 31 primary primary JJ cord-010027-r0tl01kq 479 32 care care NN cord-010027-r0tl01kq 479 33 setting setting NN cord-010027-r0tl01kq 479 34 . . . cord-010027-r0tl01kq 480 1 For for IN cord-010027-r0tl01kq 480 2 women woman NNS cord-010027-r0tl01kq 480 3 diagnosed diagnose VBN cord-010027-r0tl01kq 480 4 with with IN cord-010027-r0tl01kq 480 5 endometrial endometrial JJ cord-010027-r0tl01kq 480 6 cancer cancer NN cord-010027-r0tl01kq 480 7 , , , cord-010027-r0tl01kq 480 8 HE4 HE4 NNP cord-010027-r0tl01kq 480 9 has have VBZ cord-010027-r0tl01kq 480 10 the the DT cord-010027-r0tl01kq 480 11 potential potential NN cord-010027-r0tl01kq 480 12 to to TO cord-010027-r0tl01kq 480 13 stratify stratify VB cord-010027-r0tl01kq 480 14 them -PRON- PRP cord-010027-r0tl01kq 480 15 into into IN cord-010027-r0tl01kq 480 16 treatment treatment NN cord-010027-r0tl01kq 480 17 regimens regimen NNS cord-010027-r0tl01kq 480 18 where where WRB cord-010027-r0tl01kq 480 19 the the DT cord-010027-r0tl01kq 480 20 most most RBS cord-010027-r0tl01kq 480 21 appropriate appropriate JJ cord-010027-r0tl01kq 480 22 treatment treatment NN cord-010027-r0tl01kq 480 23 can can MD cord-010027-r0tl01kq 480 24 be be VB cord-010027-r0tl01kq 480 25 delivered deliver VBN cord-010027-r0tl01kq 480 26 resulting result VBG cord-010027-r0tl01kq 480 27 in in IN cord-010027-r0tl01kq 480 28 improved improved JJ cord-010027-r0tl01kq 480 29 quality quality NN cord-010027-r0tl01kq 480 30 of of IN cord-010027-r0tl01kq 480 31 life life NN cord-010027-r0tl01kq 480 32 and and CC cord-010027-r0tl01kq 480 33 outcome outcome NN cord-010027-r0tl01kq 480 34 for for IN cord-010027-r0tl01kq 480 35 endometrial endometrial JJ cord-010027-r0tl01kq 480 36 cancer cancer NN cord-010027-r0tl01kq 480 37 patients patient NNS cord-010027-r0tl01kq 480 38 . . . cord-010027-r0tl01kq 481 1 Platelets platelet NNS cord-010027-r0tl01kq 481 2 Drive drive VBP cord-010027-r0tl01kq 481 3 Metastatic metastatic JJ cord-010027-r0tl01kq 481 4 Changes change NNS cord-010027-r0tl01kq 481 5 in in IN cord-010027-r0tl01kq 481 6 Ovarian Ovarian NNP cord-010027-r0tl01kq 481 7 Cancer Cancer NNP cord-010027-r0tl01kq 481 8 Cells Cells NNP cord-010027-r0tl01kq 481 9 P p NN cord-010027-r0tl01kq 481 10 CD cd NN cord-010027-r0tl01kq 481 11 Spillane Spillane NNP cord-010027-r0tl01kq 481 12 1 1 CD cord-010027-r0tl01kq 481 13 ; ; : cord-010027-r0tl01kq 481 14 NM NM NNP cord-010027-r0tl01kq 481 15 Cooke Cooke NNP cord-010027-r0tl01kq 481 16 2 2 CD cord-010027-r0tl01kq 481 17 ; ; : cord-010027-r0tl01kq 481 18 S S NNP cord-010027-r0tl01kq 481 19 O'Toole O'Toole NNP cord-010027-r0tl01kq 481 20 3 3 CD cord-010027-r0tl01kq 481 21 ; ; : cord-010027-r0tl01kq 481 22 D D NNP cord-010027-r0tl01kq 481 23 Kenny Kenny NNP cord-010027-r0tl01kq 481 24 2 2 CD cord-010027-r0tl01kq 481 25 ; ; : cord-010027-r0tl01kq 481 26 O o UH cord-010027-r0tl01kq 481 27 Sheils Sheils NNP cord-010027-r0tl01kq 481 28 1 1 CD cord-010027-r0tl01kq 481 29 ; ; : cord-010027-r0tl01kq 481 30 JJ JJ NNP cord-010027-r0tl01kq 481 31 O'Leary O'Leary NNP cord-010027-r0tl01kq 481 32 1 1 CD cord-010027-r0tl01kq 481 33 1 1 CD cord-010027-r0tl01kq 481 34 Histopathology Histopathology NNP cord-010027-r0tl01kq 481 35 Department Department NNP cord-010027-r0tl01kq 481 36 , , , cord-010027-r0tl01kq 481 37 Trinity Trinity NNP cord-010027-r0tl01kq 481 38 College College NNP cord-010027-r0tl01kq 481 39 Dublin Dublin NNP cord-010027-r0tl01kq 481 40 , , , cord-010027-r0tl01kq 481 41 Dublin Dublin NNP cord-010027-r0tl01kq 481 42 , , , cord-010027-r0tl01kq 481 43 Ireland Ireland NNP cord-010027-r0tl01kq 481 44 ; ; : cord-010027-r0tl01kq 481 45 2 2 CD cord-010027-r0tl01kq 481 46 Department Department NNP cord-010027-r0tl01kq 481 47 of of IN cord-010027-r0tl01kq 481 48 Molecular Molecular NNP cord-010027-r0tl01kq 481 49 and and CC cord-010027-r0tl01kq 481 50 Cellular Cellular NNP cord-010027-r0tl01kq 481 51 Therapeutics Therapeutics NNP cord-010027-r0tl01kq 481 52 , , , cord-010027-r0tl01kq 481 53 RCSI RCSI NNP cord-010027-r0tl01kq 481 54 , , , cord-010027-r0tl01kq 481 55 Dublin Dublin NNP cord-010027-r0tl01kq 481 56 , , , cord-010027-r0tl01kq 481 57 Ireland Ireland NNP cord-010027-r0tl01kq 481 58 ; ; : cord-010027-r0tl01kq 481 59 3 3 CD cord-010027-r0tl01kq 481 60 Department Department NNP cord-010027-r0tl01kq 481 61 of of IN cord-010027-r0tl01kq 481 62 Obstetrics Obstetrics NNP cord-010027-r0tl01kq 481 63 and and CC cord-010027-r0tl01kq 481 64 Gynaecology Gynaecology NNP cord-010027-r0tl01kq 481 65 , , , cord-010027-r0tl01kq 481 66 Trinity Trinity NNP cord-010027-r0tl01kq 481 67 College College NNP cord-010027-r0tl01kq 481 68 Dublin Dublin NNP cord-010027-r0tl01kq 481 69 , , , cord-010027-r0tl01kq 481 70 Dublin Dublin NNP cord-010027-r0tl01kq 481 71 , , , cord-010027-r0tl01kq 482 1 Ireland Ireland NNP cord-010027-r0tl01kq 482 2 Background Background NNP cord-010027-r0tl01kq 482 3 : : : cord-010027-r0tl01kq 483 1 Ovarian ovarian JJ cord-010027-r0tl01kq 483 2 cancer cancer NN cord-010027-r0tl01kq 483 3 is be VBZ cord-010027-r0tl01kq 483 4 the the DT cord-010027-r0tl01kq 483 5 5th 5th JJ cord-010027-r0tl01kq 483 6 leading leading NN cord-010027-r0tl01kq 483 7 cause cause NN cord-010027-r0tl01kq 483 8 of of IN cord-010027-r0tl01kq 483 9 cancer cancer NN cord-010027-r0tl01kq 483 10 related relate VBN cord-010027-r0tl01kq 483 11 deaths death NNS cord-010027-r0tl01kq 483 12 in in IN cord-010027-r0tl01kq 483 13 women woman NNS cord-010027-r0tl01kq 483 14 . . . cord-010027-r0tl01kq 484 1 Previously previously RB cord-010027-r0tl01kq 484 2 we -PRON- PRP cord-010027-r0tl01kq 484 3 described describe VBD cord-010027-r0tl01kq 484 4 a a DT cord-010027-r0tl01kq 484 5 dynamic dynamic JJ cord-010027-r0tl01kq 484 6 interaction interaction NN cord-010027-r0tl01kq 484 7 between between IN cord-010027-r0tl01kq 484 8 ovarian ovarian JJ cord-010027-r0tl01kq 484 9 cancer cancer NN cord-010027-r0tl01kq 484 10 cells cell NNS cord-010027-r0tl01kq 484 11 and and CC cord-010027-r0tl01kq 484 12 platelets platelet NNS cord-010027-r0tl01kq 484 13 in in IN cord-010027-r0tl01kq 484 14 vitro vitro FW cord-010027-r0tl01kq 484 15 , , , cord-010027-r0tl01kq 484 16 involving involve VBG cord-010027-r0tl01kq 484 17 platelet platelet NN cord-010027-r0tl01kq 484 18 adhesion adhesion NN cord-010027-r0tl01kq 484 19 , , , cord-010027-r0tl01kq 484 20 activation activation NN cord-010027-r0tl01kq 484 21 and and CC cord-010027-r0tl01kq 484 22 induction induction NN cord-010027-r0tl01kq 484 23 of of IN cord-010027-r0tl01kq 484 24 pro pro JJ cord-010027-r0tl01kq 484 25 - - JJ cord-010027-r0tl01kq 484 26 survival survival JJ cord-010027-r0tl01kq 484 27 and and CC cord-010027-r0tl01kq 484 28 pro pro JJ cord-010027-r0tl01kq 484 29 - - JJ cord-010027-r0tl01kq 484 30 angiogenic angiogenic JJ cord-010027-r0tl01kq 484 31 signals signal NNS cord-010027-r0tl01kq 484 32 in in IN cord-010027-r0tl01kq 484 33 the the DT cord-010027-r0tl01kq 484 34 cancer cancer NN cord-010027-r0tl01kq 484 35 cells cell NNS cord-010027-r0tl01kq 484 36 . . . cord-010027-r0tl01kq 485 1 This this DT cord-010027-r0tl01kq 485 2 study study NN cord-010027-r0tl01kq 485 3 looked look VBD cord-010027-r0tl01kq 485 4 to to TO cord-010027-r0tl01kq 485 5 further further RB cord-010027-r0tl01kq 485 6 investigate investigate VB cord-010027-r0tl01kq 485 7 this this DT cord-010027-r0tl01kq 485 8 phenomenon phenomenon NN cord-010027-r0tl01kq 485 9 in in IN cord-010027-r0tl01kq 485 10 ovarian ovarian JJ cord-010027-r0tl01kq 485 11 cancer cancer NN cord-010027-r0tl01kq 485 12 cells cell NNS cord-010027-r0tl01kq 485 13 by by IN cord-010027-r0tl01kq 485 14 assessing assess VBG cord-010027-r0tl01kq 485 15 the the DT cord-010027-r0tl01kq 485 16 molecular molecular JJ cord-010027-r0tl01kq 485 17 changes change NNS cord-010027-r0tl01kq 485 18 it -PRON- PRP cord-010027-r0tl01kq 485 19 induced induce VBD cord-010027-r0tl01kq 485 20 . . . cord-010027-r0tl01kq 486 1 Methods method NNS cord-010027-r0tl01kq 486 2 : : : cord-010027-r0tl01kq 486 3 Cell cell NN cord-010027-r0tl01kq 486 4 lines line NNS cord-010027-r0tl01kq 486 5 59 59 CD cord-010027-r0tl01kq 486 6 M M NNP cord-010027-r0tl01kq 486 7 and and CC cord-010027-r0tl01kq 486 8 SKOV3 SKOV3 NNP cord-010027-r0tl01kq 486 9 were be VBD cord-010027-r0tl01kq 486 10 used use VBN cord-010027-r0tl01kq 486 11 as as IN cord-010027-r0tl01kq 486 12 in in IN cord-010027-r0tl01kq 486 13 vitro vitro FW cord-010027-r0tl01kq 486 14 models model NNS cord-010027-r0tl01kq 486 15 of of IN cord-010027-r0tl01kq 486 16 metastatic metastatic JJ cord-010027-r0tl01kq 486 17 ovarian ovarian JJ cord-010027-r0tl01kq 486 18 cancer cancer NN cord-010027-r0tl01kq 486 19 . . . cord-010027-r0tl01kq 487 1 Platelet platelet NN cord-010027-r0tl01kq 487 2 cloaking cloaking NN cord-010027-r0tl01kq 487 3 of of IN cord-010027-r0tl01kq 487 4 cells cell NNS cord-010027-r0tl01kq 487 5 was be VBD cord-010027-r0tl01kq 487 6 quantified quantify VBN cord-010027-r0tl01kq 487 7 by by IN cord-010027-r0tl01kq 487 8 flow flow NN cord-010027-r0tl01kq 487 9 cytometry cytometry NN cord-010027-r0tl01kq 487 10 . . . cord-010027-r0tl01kq 488 1 Cells cell NNS cord-010027-r0tl01kq 488 2 co co VBP cord-010027-r0tl01kq 488 3 - - JJ cord-010027-r0tl01kq 488 4 cultured cultured JJ cord-010027-r0tl01kq 488 5 with/ with/ NNP cord-010027-r0tl01kq 488 6 without without IN cord-010027-r0tl01kq 488 7 platelets platelet NNS cord-010027-r0tl01kq 488 8 for for IN cord-010027-r0tl01kq 488 9 24hrs 24hrs NN cord-010027-r0tl01kq 488 10 were be VBD cord-010027-r0tl01kq 488 11 examined examine VBN cord-010027-r0tl01kq 488 12 by by IN cord-010027-r0tl01kq 488 13 RT RT NNP cord-010027-r0tl01kq 488 14 - - HYPH cord-010027-r0tl01kq 488 15 PCR PCR NNP cord-010027-r0tl01kq 488 16 for for IN cord-010027-r0tl01kq 488 17 EMT EMT NNP cord-010027-r0tl01kq 488 18 related relate VBN cord-010027-r0tl01kq 488 19 changes change NNS cord-010027-r0tl01kq 488 20 and and CC cord-010027-r0tl01kq 488 21 by by IN cord-010027-r0tl01kq 488 22 Affymetrix Affymetrix NNP cord-010027-r0tl01kq 488 23 Gene2.0ST Gene2.0ST NNP cord-010027-r0tl01kq 488 24 arrays array NNS cord-010027-r0tl01kq 488 25 for for IN cord-010027-r0tl01kq 488 26 whole whole JJ cord-010027-r0tl01kq 488 27 transcriptome transcriptome NN cord-010027-r0tl01kq 488 28 changes change NNS cord-010027-r0tl01kq 488 29 . . . cord-010027-r0tl01kq 489 1 Results result NNS cord-010027-r0tl01kq 489 2 : : : cord-010027-r0tl01kq 490 1 Significantly significantly RB cord-010027-r0tl01kq 490 2 more more JJR cord-010027-r0tl01kq 490 3 platelets platelet NNS cord-010027-r0tl01kq 490 4 adhered adhere VBN cord-010027-r0tl01kq 490 5 to to IN cord-010027-r0tl01kq 490 6 SKOV3 SKOV3 NNP cord-010027-r0tl01kq 490 7 cells cell NNS cord-010027-r0tl01kq 490 8 than than IN cord-010027-r0tl01kq 490 9 59 59 CD cord-010027-r0tl01kq 490 10 M M NNP cord-010027-r0tl01kq 490 11 cells cell NNS cord-010027-r0tl01kq 490 12 . . . cord-010027-r0tl01kq 491 1 While while IN cord-010027-r0tl01kq 491 2 there there EX cord-010027-r0tl01kq 491 3 were be VBD cord-010027-r0tl01kq 491 4 different different JJ cord-010027-r0tl01kq 491 5 rates rate NNS cord-010027-r0tl01kq 491 6 of of IN cord-010027-r0tl01kq 491 7 adhesion adhesion NN cord-010027-r0tl01kq 491 8 , , , cord-010027-r0tl01kq 491 9 the the DT cord-010027-r0tl01kq 491 10 platelets platelet NNS cord-010027-r0tl01kq 491 11 induced induce VBD cord-010027-r0tl01kq 491 12 similar similar JJ cord-010027-r0tl01kq 491 13 changes change NNS cord-010027-r0tl01kq 491 14 in in IN cord-010027-r0tl01kq 491 15 EMT EMT NNP cord-010027-r0tl01kq 491 16 related related JJ cord-010027-r0tl01kq 491 17 genes gene NNS cord-010027-r0tl01kq 491 18 in in IN cord-010027-r0tl01kq 491 19 both both DT cord-010027-r0tl01kq 491 20 . . . cord-010027-r0tl01kq 492 1 There there EX cord-010027-r0tl01kq 492 2 was be VBD cord-010027-r0tl01kq 492 3 a a DT cord-010027-r0tl01kq 492 4 significant significant JJ cord-010027-r0tl01kq 492 5 loss loss NN cord-010027-r0tl01kq 492 6 in in IN cord-010027-r0tl01kq 492 7 expression expression NN cord-010027-r0tl01kq 492 8 of of IN cord-010027-r0tl01kq 492 9 epithelial epithelial JJ cord-010027-r0tl01kq 492 10 genes gene NNS cord-010027-r0tl01kq 492 11 and and CC cord-010027-r0tl01kq 492 12 an an DT cord-010027-r0tl01kq 492 13 increase increase NN cord-010027-r0tl01kq 492 14 in in IN cord-010027-r0tl01kq 492 15 mesenchymal mesenchymal JJ cord-010027-r0tl01kq 492 16 genes gene NNS cord-010027-r0tl01kq 492 17 , , , cord-010027-r0tl01kq 492 18 indicating indicate VBG cord-010027-r0tl01kq 492 19 the the DT cord-010027-r0tl01kq 492 20 induction induction NN cord-010027-r0tl01kq 492 21 of of IN cord-010027-r0tl01kq 492 22 EMT EMT NNP cord-010027-r0tl01kq 492 23 . . . cord-010027-r0tl01kq 493 1 Whole whole JJ cord-010027-r0tl01kq 493 2 transcriptome transcriptome NN cord-010027-r0tl01kq 493 3 analysis analysis NN cord-010027-r0tl01kq 493 4 showed show VBD cord-010027-r0tl01kq 493 5 that that IN cord-010027-r0tl01kq 493 6 there there EX cord-010027-r0tl01kq 493 7 were be VBD cord-010027-r0tl01kq 493 8 a a DT cord-010027-r0tl01kq 493 9 greater great JJR cord-010027-r0tl01kq 493 10 number number NN cord-010027-r0tl01kq 493 11 of of IN cord-010027-r0tl01kq 493 12 gene gene NN cord-010027-r0tl01kq 493 13 expression expression NN cord-010027-r0tl01kq 493 14 changes change NNS cord-010027-r0tl01kq 493 15 occurring occur VBG cord-010027-r0tl01kq 493 16 in in IN cord-010027-r0tl01kq 493 17 SKOV3 SKOV3 NNP cord-010027-r0tl01kq 493 18 cells cell NNS cord-010027-r0tl01kq 493 19 compared compare VBN cord-010027-r0tl01kq 493 20 to to IN cord-010027-r0tl01kq 493 21 59 59 CD cord-010027-r0tl01kq 493 22 M M NNP cord-010027-r0tl01kq 493 23 cells cell NNS cord-010027-r0tl01kq 493 24 , , , cord-010027-r0tl01kq 493 25 correlating correlate VBG cord-010027-r0tl01kq 493 26 with with IN cord-010027-r0tl01kq 493 27 the the DT cord-010027-r0tl01kq 493 28 adhesion adhesion NN cord-010027-r0tl01kq 493 29 data datum NNS cord-010027-r0tl01kq 493 30 . . . cord-010027-r0tl01kq 494 1 A a DT cord-010027-r0tl01kq 494 2 32 32 CD cord-010027-r0tl01kq 494 3 gene gene NN cord-010027-r0tl01kq 494 4 panel panel NN cord-010027-r0tl01kq 494 5 of of IN cord-010027-r0tl01kq 494 6 commonly commonly RB cord-010027-r0tl01kq 494 7 affected affect VBN cord-010027-r0tl01kq 494 8 genes gene NNS cord-010027-r0tl01kq 494 9 in in IN cord-010027-r0tl01kq 494 10 both both DT cord-010027-r0tl01kq 494 11 cell cell NN cord-010027-r0tl01kq 494 12 lines line NNS cord-010027-r0tl01kq 494 13 was be VBD cord-010027-r0tl01kq 494 14 identified identify VBN cord-010027-r0tl01kq 494 15 , , , cord-010027-r0tl01kq 494 16 many many JJ cord-010027-r0tl01kq 494 17 of of IN cord-010027-r0tl01kq 494 18 which which WDT cord-010027-r0tl01kq 494 19 form form VBP cord-010027-r0tl01kq 494 20 part part NN cord-010027-r0tl01kq 494 21 of of IN cord-010027-r0tl01kq 494 22 an an DT cord-010027-r0tl01kq 494 23 interlinking interlink VBG cord-010027-r0tl01kq 494 24 pathway pathway NN cord-010027-r0tl01kq 494 25 that that WDT cord-010027-r0tl01kq 494 26 is be VBZ cord-010027-r0tl01kq 494 27 regulated regulate VBN cord-010027-r0tl01kq 494 28 by by IN cord-010027-r0tl01kq 494 29 TGFβ1 TGFβ1 NNS cord-010027-r0tl01kq 494 30 and and CC cord-010027-r0tl01kq 494 31 associated associate VBN cord-010027-r0tl01kq 494 32 with with IN cord-010027-r0tl01kq 494 33 cell cell NN cord-010027-r0tl01kq 494 34 adhesion adhesion NN cord-010027-r0tl01kq 494 35 / / SYM cord-010027-r0tl01kq 494 36 ECM ECM NNP cord-010027-r0tl01kq 494 37 remodelling remodelling NN cord-010027-r0tl01kq 494 38 . . . cord-010027-r0tl01kq 495 1 Though though IN cord-010027-r0tl01kq 495 2 only only RB cord-010027-r0tl01kq 495 3 32 32 CD cord-010027-r0tl01kq 495 4 genes gene NNS cord-010027-r0tl01kq 495 5 overlapped overlap VBN cord-010027-r0tl01kq 495 6 , , , cord-010027-r0tl01kq 495 7 the the DT cord-010027-r0tl01kq 495 8 biological biological JJ cord-010027-r0tl01kq 495 9 processes process NNS cord-010027-r0tl01kq 495 10 affected affect VBN cord-010027-r0tl01kq 495 11 in in IN cord-010027-r0tl01kq 495 12 both both DT cord-010027-r0tl01kq 495 13 cell cell NN cord-010027-r0tl01kq 495 14 lines line NNS cord-010027-r0tl01kq 495 15 were be VBD cord-010027-r0tl01kq 495 16 very very RB cord-010027-r0tl01kq 495 17 similar similar JJ cord-010027-r0tl01kq 495 18 , , , cord-010027-r0tl01kq 495 19 with with IN cord-010027-r0tl01kq 495 20 103 103 CD cord-010027-r0tl01kq 495 21 of of IN cord-010027-r0tl01kq 495 22 the the DT cord-010027-r0tl01kq 495 23 148 148 CD cord-010027-r0tl01kq 495 24 processes process NNS cord-010027-r0tl01kq 495 25 enriched enrich VBN cord-010027-r0tl01kq 495 26 in in IN cord-010027-r0tl01kq 495 27 the the DT cord-010027-r0tl01kq 495 28 59 59 CD cord-010027-r0tl01kq 495 29 M M NNP cord-010027-r0tl01kq 495 30 data datum NNS cord-010027-r0tl01kq 495 31 set set VBN cord-010027-r0tl01kq 495 32 also also RB cord-010027-r0tl01kq 495 33 seen see VBN cord-010027-r0tl01kq 495 34 in in IN cord-010027-r0tl01kq 495 35 the the DT cord-010027-r0tl01kq 495 36 SKOV3 SKOV3 NNP cord-010027-r0tl01kq 495 37 data data NN cord-010027-r0tl01kq 495 38 set set NN cord-010027-r0tl01kq 495 39 . . . cord-010027-r0tl01kq 496 1 Conclusion conclusion NN cord-010027-r0tl01kq 496 2 : : : cord-010027-r0tl01kq 497 1 This this DT cord-010027-r0tl01kq 497 2 study study NN cord-010027-r0tl01kq 497 3 shows show VBZ cord-010027-r0tl01kq 497 4 that that IN cord-010027-r0tl01kq 497 5 platelets platelet NNS cord-010027-r0tl01kq 497 6 can can MD cord-010027-r0tl01kq 497 7 enhance enhance VB cord-010027-r0tl01kq 497 8 the the DT cord-010027-r0tl01kq 497 9 metastatic metastatic JJ cord-010027-r0tl01kq 497 10 potential potential NN cord-010027-r0tl01kq 497 11 of of IN cord-010027-r0tl01kq 497 12 ovarian ovarian JJ cord-010027-r0tl01kq 497 13 cancer cancer NN cord-010027-r0tl01kq 497 14 cells cell NNS cord-010027-r0tl01kq 497 15 through through IN cord-010027-r0tl01kq 497 16 the the DT cord-010027-r0tl01kq 497 17 induction induction NN cord-010027-r0tl01kq 497 18 of of IN cord-010027-r0tl01kq 497 19 EMT EMT NNP cord-010027-r0tl01kq 497 20 and and CC cord-010027-r0tl01kq 497 21 ECM ECM NNP cord-010027-r0tl01kq 497 22 changes change NNS cord-010027-r0tl01kq 497 23 . . . cord-010027-r0tl01kq 498 1 In in IN cord-010027-r0tl01kq 498 2 addition addition NN cord-010027-r0tl01kq 498 3 , , , cord-010027-r0tl01kq 498 4 it -PRON- PRP cord-010027-r0tl01kq 498 5 has have VBZ cord-010027-r0tl01kq 498 6 identified identify VBN cord-010027-r0tl01kq 498 7 a a DT cord-010027-r0tl01kq 498 8 set set NN cord-010027-r0tl01kq 498 9 of of IN cord-010027-r0tl01kq 498 10 32 32 CD cord-010027-r0tl01kq 498 11 genes gene NNS cord-010027-r0tl01kq 498 12 that that WDT cord-010027-r0tl01kq 498 13 hold hold VBP cord-010027-r0tl01kq 498 14 potential potential NN cord-010027-r0tl01kq 498 15 to to TO cord-010027-r0tl01kq 498 16 be be VB cord-010027-r0tl01kq 498 17 in in IN cord-010027-r0tl01kq 498 18 vivo vivo NN cord-010027-r0tl01kq 498 19 markers marker NNS cord-010027-r0tl01kq 498 20 of of IN cord-010027-r0tl01kq 498 21 this this DT cord-010027-r0tl01kq 498 22 interaction interaction NN cord-010027-r0tl01kq 498 23 . . . cord-010027-r0tl01kq 499 1 Background background NN cord-010027-r0tl01kq 499 2 : : : cord-010027-r0tl01kq 500 1 During during IN cord-010027-r0tl01kq 500 2 the the DT cord-010027-r0tl01kq 500 3 metastatic metastatic JJ cord-010027-r0tl01kq 500 4 cascade cascade NN cord-010027-r0tl01kq 500 5 , , , cord-010027-r0tl01kq 500 6 circulating circulate VBG cord-010027-r0tl01kq 500 7 tumour tumour NN cord-010027-r0tl01kq 500 8 cells cell NNS cord-010027-r0tl01kq 500 9 rapidly rapidly RB cord-010027-r0tl01kq 500 10 and and CC cord-010027-r0tl01kq 500 11 efficiently efficiently RB cord-010027-r0tl01kq 500 12 adopt adopt VB cord-010027-r0tl01kq 500 13 a a DT cord-010027-r0tl01kq 500 14 platelet platelet NN cord-010027-r0tl01kq 500 15 cloak cloak NN cord-010027-r0tl01kq 500 16 . . . cord-010027-r0tl01kq 501 1 Platelet platelet NN cord-010027-r0tl01kq 501 2 cloaking cloaking NN cord-010027-r0tl01kq 501 3 of of IN cord-010027-r0tl01kq 501 4 tumour tumour NN cord-010027-r0tl01kq 501 5 cells cell NNS cord-010027-r0tl01kq 501 6 promotes promote VBZ cord-010027-r0tl01kq 501 7 metastatic metastatic JJ cord-010027-r0tl01kq 501 8 disease disease NN cord-010027-r0tl01kq 501 9 by by IN cord-010027-r0tl01kq 501 10 promoting promote VBG cord-010027-r0tl01kq 501 11 cellular cellular JJ cord-010027-r0tl01kq 501 12 proliferation proliferation NN cord-010027-r0tl01kq 501 13 , , , cord-010027-r0tl01kq 501 14 angiogenesis angiogenesis NN cord-010027-r0tl01kq 501 15 and and CC cord-010027-r0tl01kq 501 16 EMT EMT NNP cord-010027-r0tl01kq 501 17 while while IN cord-010027-r0tl01kq 501 18 inhibiting inhibit VBG cord-010027-r0tl01kq 501 19 autophagy autophagy NN cord-010027-r0tl01kq 501 20 and and CC cord-010027-r0tl01kq 501 21 apoptosis apoptosis NN cord-010027-r0tl01kq 501 22 . . . cord-010027-r0tl01kq 502 1 The the DT cord-010027-r0tl01kq 502 2 aim aim NN cord-010027-r0tl01kq 502 3 of of IN cord-010027-r0tl01kq 502 4 this this DT cord-010027-r0tl01kq 502 5 study study NN cord-010027-r0tl01kq 502 6 is be VBZ cord-010027-r0tl01kq 502 7 to to TO cord-010027-r0tl01kq 502 8 examine examine VB cord-010027-r0tl01kq 502 9 whether whether IN cord-010027-r0tl01kq 502 10 the the DT cord-010027-r0tl01kq 502 11 platelet platelet NN cord-010027-r0tl01kq 502 12 cloak cloak NN cord-010027-r0tl01kq 502 13 contributes contribute VBZ cord-010027-r0tl01kq 502 14 to to TO cord-010027-r0tl01kq 502 15 tumour tumour NN cord-010027-r0tl01kq 502 16 cell cell NN cord-010027-r0tl01kq 502 17 evasion evasion NN cord-010027-r0tl01kq 502 18 of of IN cord-010027-r0tl01kq 502 19 NK NK NNP cord-010027-r0tl01kq 502 20 cell cell NN cord-010027-r0tl01kq 502 21 mediated mediate VBD cord-010027-r0tl01kq 502 22 immune immune JJ cord-010027-r0tl01kq 502 23 surveillance surveillance NN cord-010027-r0tl01kq 502 24 . . . cord-010027-r0tl01kq 503 1 Methods method NNS cord-010027-r0tl01kq 503 2 : : : cord-010027-r0tl01kq 503 3 Freshly freshly RB cord-010027-r0tl01kq 503 4 isolated isolate VBN cord-010027-r0tl01kq 503 5 PBMCs pbmc NNS cord-010027-r0tl01kq 503 6 were be VBD cord-010027-r0tl01kq 503 7 harvested harvest VBN cord-010027-r0tl01kq 503 8 from from IN cord-010027-r0tl01kq 503 9 healthy healthy JJ cord-010027-r0tl01kq 503 10 donors donor NNS cord-010027-r0tl01kq 503 11 and and CC cord-010027-r0tl01kq 503 12 stimulated stimulate VBD cord-010027-r0tl01kq 503 13 for for IN cord-010027-r0tl01kq 503 14 18 18 CD cord-010027-r0tl01kq 503 15 hours hour NNS cord-010027-r0tl01kq 503 16 with with IN cord-010027-r0tl01kq 503 17 IL-2 IL-2 NNP cord-010027-r0tl01kq 503 18 ( ( -LRB- cord-010027-r0tl01kq 503 19 500U 500U NNP cord-010027-r0tl01kq 503 20 / / SYM cord-010027-r0tl01kq 503 21 mL ml NN cord-010027-r0tl01kq 503 22 ) ) -RRB- cord-010027-r0tl01kq 503 23 . . . cord-010027-r0tl01kq 504 1 PBMCs pbmc NNS cord-010027-r0tl01kq 504 2 were be VBD cord-010027-r0tl01kq 504 3 co co JJ cord-010027-r0tl01kq 504 4 - - VBN cord-010027-r0tl01kq 504 5 incubated incubate VBN cord-010027-r0tl01kq 505 1 with with IN cord-010027-r0tl01kq 505 2 ovarian ovarian NN cord-010027-r0tl01kq 505 3 ( ( -LRB- cord-010027-r0tl01kq 505 4 59 59 CD cord-010027-r0tl01kq 505 5 M M NNP cord-010027-r0tl01kq 505 6 and and CC cord-010027-r0tl01kq 505 7 SKOV3 SKOV3 NNP cord-010027-r0tl01kq 505 8 ) ) -RRB- cord-010027-r0tl01kq 505 9 , , , cord-010027-r0tl01kq 505 10 melanoma melanoma NN cord-010027-r0tl01kq 505 11 ( ( -LRB- cord-010027-r0tl01kq 505 12 Sk Sk NNP cord-010027-r0tl01kq 505 13 - - HYPH cord-010027-r0tl01kq 505 14 Mel-28 Mel-28 NNP cord-010027-r0tl01kq 505 15 ) ) -RRB- cord-010027-r0tl01kq 505 16 and and CC cord-010027-r0tl01kq 505 17 CML CML NNP cord-010027-r0tl01kq 505 18 ( ( -LRB- cord-010027-r0tl01kq 505 19 K562 k562 CD cord-010027-r0tl01kq 505 20 ) ) -RRB- cord-010027-r0tl01kq 505 21 cell cell NN cord-010027-r0tl01kq 505 22 lines line NNS cord-010027-r0tl01kq 505 23 that that WDT cord-010027-r0tl01kq 505 24 were be VBD cord-010027-r0tl01kq 505 25 either either RB cord-010027-r0tl01kq 505 26 uncloaked uncloak VBN cord-010027-r0tl01kq 505 27 , , , cord-010027-r0tl01kq 505 28 or or CC cord-010027-r0tl01kq 505 29 cloaked cloak VBN cord-010027-r0tl01kq 505 30 with with IN cord-010027-r0tl01kq 505 31 washed washed JJ cord-010027-r0tl01kq 505 32 platelets platelet NNS cord-010027-r0tl01kq 505 33 from from IN cord-010027-r0tl01kq 505 34 healthy healthy JJ cord-010027-r0tl01kq 505 35 donors donor NNS cord-010027-r0tl01kq 505 36 . . . cord-010027-r0tl01kq 506 1 The the DT cord-010027-r0tl01kq 506 2 NK NK NNP cord-010027-r0tl01kq 506 3 - - HYPH cord-010027-r0tl01kq 506 4 tumour tumour NN cord-010027-r0tl01kq 506 5 cell cell NN cord-010027-r0tl01kq 506 6 receptor receptor NN cord-010027-r0tl01kq 506 7 ligand ligand NN cord-010027-r0tl01kq 506 8 systems system NNS cord-010027-r0tl01kq 506 9 , , , cord-010027-r0tl01kq 506 10 NKG2D nkg2d NN cord-010027-r0tl01kq 506 11 - - HYPH cord-010027-r0tl01kq 506 12 MICA MICA NNP cord-010027-r0tl01kq 506 13 / / SYM cord-010027-r0tl01kq 506 14 MICB MICB NNP cord-010027-r0tl01kq 506 15 and and CC cord-010027-r0tl01kq 506 16 CD96 CD96 NNP cord-010027-r0tl01kq 506 17 / / SYM cord-010027-r0tl01kq 506 18 CD226-CD155 cd226-cd155 PRP cord-010027-r0tl01kq 506 19 were be VBD cord-010027-r0tl01kq 506 20 examined examine VBN cord-010027-r0tl01kq 506 21 using use VBG cord-010027-r0tl01kq 506 22 NK NK NNP cord-010027-r0tl01kq 506 23 cell cell NN cord-010027-r0tl01kq 506 24 CD107a CD107a NNP cord-010027-r0tl01kq 506 25 expression expression NN cord-010027-r0tl01kq 506 26 and and CC cord-010027-r0tl01kq 506 27 interferon interferon NN cord-010027-r0tl01kq 506 28 - - HYPH cord-010027-r0tl01kq 506 29 gamma gamma NN cord-010027-r0tl01kq 506 30 production production NN cord-010027-r0tl01kq 506 31 to to TO cord-010027-r0tl01kq 506 32 quantify quantify VB cord-010027-r0tl01kq 506 33 NK NK NNP cord-010027-r0tl01kq 506 34 cell cell NN cord-010027-r0tl01kq 506 35 mediated mediate VBN cord-010027-r0tl01kq 506 36 recognition recognition NN cord-010027-r0tl01kq 506 37 and and CC cord-010027-r0tl01kq 506 38 ' ' `` cord-010027-r0tl01kq 506 39 killing killing NN cord-010027-r0tl01kq 506 40 ' ' '' cord-010027-r0tl01kq 506 41 of of IN cord-010027-r0tl01kq 506 42 cancer cancer NN cord-010027-r0tl01kq 506 43 cells cell NNS cord-010027-r0tl01kq 506 44 . . . cord-010027-r0tl01kq 507 1 Results result NNS cord-010027-r0tl01kq 508 1 : : : cord-010027-r0tl01kq 508 2 We -PRON- PRP cord-010027-r0tl01kq 508 3 first first RB cord-010027-r0tl01kq 508 4 demonstrated demonstrate VBD cord-010027-r0tl01kq 508 5 that that IN cord-010027-r0tl01kq 508 6 ovarian ovarian NN cord-010027-r0tl01kq 508 7 and and CC cord-010027-r0tl01kq 508 8 melanoma melanoma NN cord-010027-r0tl01kq 508 9 cancer cancer NN cord-010027-r0tl01kq 508 10 cell cell NN cord-010027-r0tl01kq 508 11 lines line NNS cord-010027-r0tl01kq 508 12 when when WRB cord-010027-r0tl01kq 508 13 cloaked cloak VBN cord-010027-r0tl01kq 508 14 with with IN cord-010027-r0tl01kq 508 15 washed washed JJ cord-010027-r0tl01kq 508 16 platelets platelet NNS cord-010027-r0tl01kq 508 17 strongly strongly RB cord-010027-r0tl01kq 508 18 inhibited inhibit VBD cord-010027-r0tl01kq 508 19 NK NK NNP cord-010027-r0tl01kq 508 20 cell cell NN cord-010027-r0tl01kq 508 21 antitumor antitumor NN cord-010027-r0tl01kq 508 22 reactivity reactivity NN cord-010027-r0tl01kq 508 23 . . . cord-010027-r0tl01kq 509 1 Platelet platelet NN cord-010027-r0tl01kq 509 2 cloaking cloaking NN cord-010027-r0tl01kq 509 3 induced induce VBN cord-010027-r0tl01kq 509 4 down down IN cord-010027-r0tl01kq 509 5 - - HYPH cord-010027-r0tl01kq 509 6 regulation regulation NN cord-010027-r0tl01kq 509 7 of of IN cord-010027-r0tl01kq 509 8 the the DT cord-010027-r0tl01kq 509 9 stress stress NN cord-010027-r0tl01kq 509 10 ligands ligand NNS cord-010027-r0tl01kq 509 11 MICA MICA NNP cord-010027-r0tl01kq 509 12 and and CC cord-010027-r0tl01kq 509 13 MICB MICB NNP cord-010027-r0tl01kq 509 14 on on IN cord-010027-r0tl01kq 509 15 the the DT cord-010027-r0tl01kq 509 16 tumour tumour NN cord-010027-r0tl01kq 509 17 cell cell NN cord-010027-r0tl01kq 509 18 coupled couple VBN cord-010027-r0tl01kq 509 19 with with IN cord-010027-r0tl01kq 509 20 their -PRON- PRP$ cord-010027-r0tl01kq 509 21 release release NN cord-010027-r0tl01kq 509 22 into into IN cord-010027-r0tl01kq 509 23 the the DT cord-010027-r0tl01kq 509 24 microenvironment microenvironment NN cord-010027-r0tl01kq 509 25 , , , cord-010027-r0tl01kq 509 26 a a DT cord-010027-r0tl01kq 509 27 known know VBN cord-010027-r0tl01kq 509 28 NK NK NNP cord-010027-r0tl01kq 509 29 cell cell NN cord-010027-r0tl01kq 509 30 immune immune JJ cord-010027-r0tl01kq 509 31 decoy decoy NN cord-010027-r0tl01kq 509 32 strategy strategy NN cord-010027-r0tl01kq 509 33 . . . cord-010027-r0tl01kq 510 1 In in IN cord-010027-r0tl01kq 510 2 addition addition NN cord-010027-r0tl01kq 510 3 , , , cord-010027-r0tl01kq 510 4 platelets platelet NNS cord-010027-r0tl01kq 510 5 significantly significantly RB cord-010027-r0tl01kq 510 6 down down RB cord-010027-r0tl01kq 510 7 - - HYPH cord-010027-r0tl01kq 510 8 regulated regulate VBN cord-010027-r0tl01kq 510 9 both both CC cord-010027-r0tl01kq 510 10 CD96 CD96 NNP cord-010027-r0tl01kq 510 11 ( ( -LRB- cord-010027-r0tl01kq 510 12 NK NK NNP cord-010027-r0tl01kq 510 13 cell cell NN cord-010027-r0tl01kq 510 14 ) ) -RRB- cord-010027-r0tl01kq 510 15 and and CC cord-010027-r0tl01kq 510 16 CD155 cd155 NN cord-010027-r0tl01kq 510 17 ( ( -LRB- cord-010027-r0tl01kq 510 18 tumour tumour NN cord-010027-r0tl01kq 510 19 cell cell NN cord-010027-r0tl01kq 510 20 ) ) -RRB- cord-010027-r0tl01kq 510 21 , , , cord-010027-r0tl01kq 510 22 inhibiting inhibit VBG cord-010027-r0tl01kq 510 23 NK NK NNP cord-010027-r0tl01kq 510 24 cell cell NN cord-010027-r0tl01kq 510 25 activity activity NN cord-010027-r0tl01kq 510 26 . . . cord-010027-r0tl01kq 511 1 Both both DT cord-010027-r0tl01kq 511 2 mechanisms mechanism NNS cord-010027-r0tl01kq 511 3 occur occur VBP cord-010027-r0tl01kq 511 4 in in IN cord-010027-r0tl01kq 511 5 tandem tandem NN cord-010027-r0tl01kq 511 6 to to TO cord-010027-r0tl01kq 511 7 comprehensively comprehensively RB cord-010027-r0tl01kq 511 8 incapacitate incapacitate VB cord-010027-r0tl01kq 511 9 NK NK NNP cord-010027-r0tl01kq 511 10 cells cell NNS cord-010027-r0tl01kq 511 11 and and CC cord-010027-r0tl01kq 511 12 promote promote VB cord-010027-r0tl01kq 511 13 tumour tumour NN cord-010027-r0tl01kq 511 14 immune immune JJ cord-010027-r0tl01kq 511 15 evasion evasion NN cord-010027-r0tl01kq 511 16 . . . cord-010027-r0tl01kq 512 1 Conclusions conclusion NNS cord-010027-r0tl01kq 512 2 : : : cord-010027-r0tl01kq 513 1 Ovarian ovarian NN cord-010027-r0tl01kq 513 2 and and CC cord-010027-r0tl01kq 513 3 melanoma melanoma NN cord-010027-r0tl01kq 513 4 tumour tumour NN cord-010027-r0tl01kq 513 5 cells cell NNS cord-010027-r0tl01kq 513 6 are be VBP cord-010027-r0tl01kq 513 7 efficiently efficiently RB cord-010027-r0tl01kq 513 8 cloaked cloak VBN cord-010027-r0tl01kq 513 9 by by IN cord-010027-r0tl01kq 513 10 platelets platelet NNS cord-010027-r0tl01kq 513 11 , , , cord-010027-r0tl01kq 513 12 which which WDT cord-010027-r0tl01kq 513 13 facilitates facilitate VBZ cord-010027-r0tl01kq 513 14 immune immune JJ cord-010027-r0tl01kq 513 15 evasion evasion NN cord-010027-r0tl01kq 513 16 by by IN cord-010027-r0tl01kq 513 17 actively actively RB cord-010027-r0tl01kq 513 18 suppressing suppress VBG cord-010027-r0tl01kq 513 19 NK NK NNP cord-010027-r0tl01kq 513 20 cell cell NN cord-010027-r0tl01kq 513 21 cytotoxicity cytotoxicity NN cord-010027-r0tl01kq 513 22 and and CC cord-010027-r0tl01kq 513 23 cytokine cytokine NN cord-010027-r0tl01kq 513 24 production production NN cord-010027-r0tl01kq 513 25 . . . cord-010027-r0tl01kq 514 1 Purpose purpose NN cord-010027-r0tl01kq 514 2 of of IN cord-010027-r0tl01kq 514 3 the the DT cord-010027-r0tl01kq 514 4 study study NN cord-010027-r0tl01kq 514 5 : : : cord-010027-r0tl01kq 514 6 Glioblastomas Glioblastomas NNP cord-010027-r0tl01kq 514 7 ( ( -LRB- cord-010027-r0tl01kq 514 8 GBM GBM NNP cord-010027-r0tl01kq 514 9 ) ) -RRB- cord-010027-r0tl01kq 514 10 are be VBP cord-010027-r0tl01kq 514 11 the the DT cord-010027-r0tl01kq 514 12 most most RBS cord-010027-r0tl01kq 514 13 common common JJ cord-010027-r0tl01kq 514 14 and and CC cord-010027-r0tl01kq 514 15 most most RBS cord-010027-r0tl01kq 514 16 aggressive aggressive JJ cord-010027-r0tl01kq 514 17 primary primary JJ cord-010027-r0tl01kq 514 18 malignant malignant JJ cord-010027-r0tl01kq 514 19 brain brain NN cord-010027-r0tl01kq 514 20 tumours tumour NNS cord-010027-r0tl01kq 514 21 in in IN cord-010027-r0tl01kq 514 22 adults adult NNS cord-010027-r0tl01kq 514 23 . . . cord-010027-r0tl01kq 515 1 One one CD cord-010027-r0tl01kq 515 2 of of IN cord-010027-r0tl01kq 515 3 their -PRON- PRP$ cord-010027-r0tl01kq 515 4 histopathological histopathological JJ cord-010027-r0tl01kq 515 5 hallmarks hallmarks NNP cord-010027-r0tl01kq 515 6 is be VBZ cord-010027-r0tl01kq 515 7 the the DT cord-010027-r0tl01kq 515 8 microvascular microvascular JJ cord-010027-r0tl01kq 515 9 proliferation proliferation NN cord-010027-r0tl01kq 515 10 ; ; : cord-010027-r0tl01kq 515 11 these these DT cord-010027-r0tl01kq 515 12 tumours tumour NNS cord-010027-r0tl01kq 515 13 are be VBP cord-010027-r0tl01kq 515 14 among among IN cord-010027-r0tl01kq 515 15 the the DT cord-010027-r0tl01kq 515 16 most most JJS cord-010027-r0tl01kq 515 17 angiogenic angiogenic NN cord-010027-r0tl01kq 515 18 of of IN cord-010027-r0tl01kq 515 19 malignancies malignancy NNS cord-010027-r0tl01kq 515 20 by by IN cord-010027-r0tl01kq 515 21 displaying display VBG cord-010027-r0tl01kq 515 22 the the DT cord-010027-r0tl01kq 515 23 highest high JJS cord-010027-r0tl01kq 515 24 degree degree NN cord-010027-r0tl01kq 515 25 of of IN cord-010027-r0tl01kq 515 26 microvascular microvascular JJ cord-010027-r0tl01kq 515 27 proliferation proliferation NN cord-010027-r0tl01kq 515 28 . . . cord-010027-r0tl01kq 516 1 IGFIIR IGFIIR NNP cord-010027-r0tl01kq 516 2 / / SYM cord-010027-r0tl01kq 516 3 Man-6-P Man-6-P NNP cord-010027-r0tl01kq 516 4 is be VBZ cord-010027-r0tl01kq 516 5 a a DT cord-010027-r0tl01kq 516 6 receptor receptor NN cord-010027-r0tl01kq 516 7 that that WDT cord-010027-r0tl01kq 516 8 belongs belong VBZ cord-010027-r0tl01kq 516 9 to to IN cord-010027-r0tl01kq 516 10 the the DT cord-010027-r0tl01kq 516 11 insulin insulin NN cord-010027-r0tl01kq 516 12 - - HYPH cord-010027-r0tl01kq 516 13 like like JJ cord-010027-r0tl01kq 516 14 growth growth NN cord-010027-r0tl01kq 516 15 factor factor NN cord-010027-r0tl01kq 516 16 ( ( -LRB- cord-010027-r0tl01kq 516 17 IGF IGF NNP cord-010027-r0tl01kq 516 18 ) ) -RRB- cord-010027-r0tl01kq 516 19 system system NN cord-010027-r0tl01kq 516 20 . . . cord-010027-r0tl01kq 517 1 The the DT cord-010027-r0tl01kq 517 2 involvement involvement NN cord-010027-r0tl01kq 517 3 of of IN cord-010027-r0tl01kq 517 4 IGF IGF NNP cord-010027-r0tl01kq 517 5 - - HYPH cord-010027-r0tl01kq 517 6 IIR IIR NNP cord-010027-r0tl01kq 517 7 / / SYM cord-010027-r0tl01kq 517 8 Man-6-P Man-6-P NNP cord-010027-r0tl01kq 517 9 in in IN cord-010027-r0tl01kq 517 10 the the DT cord-010027-r0tl01kq 517 11 process process NN cord-010027-r0tl01kq 517 12 of of IN cord-010027-r0tl01kq 517 13 angiogenesis angiogenesis NN cord-010027-r0tl01kq 517 14 has have VBZ cord-010027-r0tl01kq 517 15 been be VBN cord-010027-r0tl01kq 517 16 postulated postulate VBN cord-010027-r0tl01kq 517 17 in in IN cord-010027-r0tl01kq 517 18 rare rare JJ cord-010027-r0tl01kq 517 19 earlier early JJR cord-010027-r0tl01kq 517 20 studies study NNS cord-010027-r0tl01kq 517 21 . . . cord-010027-r0tl01kq 518 1 To to IN cord-010027-r0tl01kq 518 2 our -PRON- PRP$ cord-010027-r0tl01kq 518 3 knowledge knowledge NN cord-010027-r0tl01kq 518 4 , , , cord-010027-r0tl01kq 518 5 the the DT cord-010027-r0tl01kq 518 6 role role NN cord-010027-r0tl01kq 518 7 of of IN cord-010027-r0tl01kq 518 8 IGF IGF NNP cord-010027-r0tl01kq 518 9 - - HYPH cord-010027-r0tl01kq 518 10 IIR IIR NNP cord-010027-r0tl01kq 518 11 / / SYM cord-010027-r0tl01kq 518 12 Man-6-P Man-6-P NNP cord-010027-r0tl01kq 518 13 in in IN cord-010027-r0tl01kq 518 14 the the DT cord-010027-r0tl01kq 518 15 neovascularisation neovascularisation NN cord-010027-r0tl01kq 518 16 of of IN cord-010027-r0tl01kq 518 17 human human JJ cord-010027-r0tl01kq 518 18 GBM GBM NNP cord-010027-r0tl01kq 518 19 has have VBZ cord-010027-r0tl01kq 518 20 never never RB cord-010027-r0tl01kq 518 21 been be VBN cord-010027-r0tl01kq 518 22 studied study VBN cord-010027-r0tl01kq 518 23 . . . cord-010027-r0tl01kq 519 1 Methods method NNS cord-010027-r0tl01kq 519 2 : : : cord-010027-r0tl01kq 520 1 IGF IGF NNP cord-010027-r0tl01kq 520 2 - - HYPH cord-010027-r0tl01kq 520 3 IIR IIR NNP cord-010027-r0tl01kq 520 4 / / SYM cord-010027-r0tl01kq 520 5 Man-6-P Man-6-P NNP cord-010027-r0tl01kq 520 6 expression expression NN cord-010027-r0tl01kq 520 7 was be VBD cord-010027-r0tl01kq 520 8 evaluated evaluate VBN cord-010027-r0tl01kq 520 9 in in IN cord-010027-r0tl01kq 520 10 the the DT cord-010027-r0tl01kq 520 11 vascular vascular JJ cord-010027-r0tl01kq 520 12 compartment compartment NN cord-010027-r0tl01kq 520 13 from from IN cord-010027-r0tl01kq 520 14 322 322 CD cord-010027-r0tl01kq 520 15 human human NN cord-010027-r0tl01kq 520 16 GBM GBM NNP cord-010027-r0tl01kq 520 17 and and CC cord-010027-r0tl01kq 520 18 from from IN cord-010027-r0tl01kq 520 19 10 10 CD cord-010027-r0tl01kq 520 20 normal normal JJ cord-010027-r0tl01kq 520 21 adult adult NN cord-010027-r0tl01kq 520 22 brain brain NN cord-010027-r0tl01kq 520 23 samples sample NNS cord-010027-r0tl01kq 520 24 by by IN cord-010027-r0tl01kq 520 25 means mean NNS cord-010027-r0tl01kq 520 26 of of IN cord-010027-r0tl01kq 520 27 quantitative quantitative JJ cord-010027-r0tl01kq 520 28 immunohistochemistry immunohistochemistry NN cord-010027-r0tl01kq 520 29 on on IN cord-010027-r0tl01kq 520 30 tissue tissue NN cord-010027-r0tl01kq 520 31 microarray microarray NN cord-010027-r0tl01kq 520 32 sections section NNS cord-010027-r0tl01kq 520 33 . . . cord-010027-r0tl01kq 521 1 In in IN cord-010027-r0tl01kq 521 2 vitro vitro FW cord-010027-r0tl01kq 521 3 cell cell NN cord-010027-r0tl01kq 521 4 line line NN cord-010027-r0tl01kq 521 5 experiments experiment NNS cord-010027-r0tl01kq 521 6 were be VBD cord-010027-r0tl01kq 521 7 carried carry VBN cord-010027-r0tl01kq 521 8 out out RP cord-010027-r0tl01kq 521 9 in in IN cord-010027-r0tl01kq 521 10 order order NN cord-010027-r0tl01kq 521 11 to to TO cord-010027-r0tl01kq 521 12 characterise characterise VB cord-010027-r0tl01kq 521 13 the the DT cord-010027-r0tl01kq 521 14 IGFIIR IGFIIR NNP cord-010027-r0tl01kq 521 15 / / SYM cord-010027-r0tl01kq 521 16 Man-6-P Man-6-P NNP cord-010027-r0tl01kq 521 17 role role NN cord-010027-r0tl01kq 521 18 in in IN cord-010027-r0tl01kq 521 19 angiogenesis angiogenesis NN cord-010027-r0tl01kq 521 20 . . . cord-010027-r0tl01kq 522 1 Summary summary NN cord-010027-r0tl01kq 522 2 of of IN cord-010027-r0tl01kq 522 3 results result NNS cord-010027-r0tl01kq 522 4 : : : cord-010027-r0tl01kq 523 1 IGF IGF NNP cord-010027-r0tl01kq 523 2 - - HYPH cord-010027-r0tl01kq 523 3 IIR IIR NNP cord-010027-r0tl01kq 523 4 / / SYM cord-010027-r0tl01kq 523 5 Man-6-P Man-6-P NNP cord-010027-r0tl01kq 523 6 was be VBD cord-010027-r0tl01kq 523 7 strongly strongly RB cord-010027-r0tl01kq 523 8 expressed express VBN cord-010027-r0tl01kq 523 9 in in IN cord-010027-r0tl01kq 523 10 the the DT cord-010027-r0tl01kq 523 11 cytoplasm cytoplasm NN cord-010027-r0tl01kq 523 12 of of IN cord-010027-r0tl01kq 523 13 endothelial endothelial JJ cord-010027-r0tl01kq 523 14 cells cell NNS cord-010027-r0tl01kq 523 15 in in IN cord-010027-r0tl01kq 523 16 hyperplastic hyperplastic JJ cord-010027-r0tl01kq 523 17 vessels vessel NNS cord-010027-r0tl01kq 523 18 and and CC cord-010027-r0tl01kq 523 19 exhibited exhibit VBD cord-010027-r0tl01kq 523 20 a a DT cord-010027-r0tl01kq 523 21 dot dot NN cord-010027-r0tl01kq 523 22 - - HYPH cord-010027-r0tl01kq 523 23 staining stain VBG cord-010027-r0tl01kq 523 24 pattern pattern NN cord-010027-r0tl01kq 523 25 . . . cord-010027-r0tl01kq 524 1 We -PRON- PRP cord-010027-r0tl01kq 524 2 found find VBD cord-010027-r0tl01kq 524 3 a a DT cord-010027-r0tl01kq 524 4 higher high JJR cord-010027-r0tl01kq 524 5 expression expression NN cord-010027-r0tl01kq 524 6 of of IN cord-010027-r0tl01kq 524 7 IGF IGF NNP cord-010027-r0tl01kq 524 8 - - HYPH cord-010027-r0tl01kq 524 9 IIR IIR NNP cord-010027-r0tl01kq 524 10 / / SYM cord-010027-r0tl01kq 524 11 Man-6-P Man-6-P NNP cord-010027-r0tl01kq 524 12 in in IN cord-010027-r0tl01kq 524 13 GBM GBM NNP cord-010027-r0tl01kq 524 14 vessels vessel NNS cord-010027-r0tl01kq 524 15 compared compare VBN cord-010027-r0tl01kq 524 16 to to IN cord-010027-r0tl01kq 524 17 normal normal JJ cord-010027-r0tl01kq 524 18 brain brain NN cord-010027-r0tl01kq 524 19 vessels vessel NNS cord-010027-r0tl01kq 524 20 ( ( -LRB- cord-010027-r0tl01kq 524 21 p=0.05 p=0.05 JJ cord-010027-r0tl01kq 524 22 ) ) -RRB- cord-010027-r0tl01kq 524 23 . . . cord-010027-r0tl01kq 525 1 Furthermore furthermore RB cord-010027-r0tl01kq 525 2 , , , cord-010027-r0tl01kq 525 3 preliminary preliminary JJ cord-010027-r0tl01kq 525 4 in in IN cord-010027-r0tl01kq 525 5 vitro vitro FW cord-010027-r0tl01kq 525 6 experiments experiment NNS cord-010027-r0tl01kq 525 7 suggest suggest VBP cord-010027-r0tl01kq 525 8 a a DT cord-010027-r0tl01kq 525 9 role role NN cord-010027-r0tl01kq 525 10 of of IN cord-010027-r0tl01kq 525 11 IGF IGF NNP cord-010027-r0tl01kq 525 12 - - HYPH cord-010027-r0tl01kq 525 13 IIR IIR NNP cord-010027-r0tl01kq 525 14 / / SYM cord-010027-r0tl01kq 525 15 Man-6-P Man-6-P NNP cord-010027-r0tl01kq 525 16 in in IN cord-010027-r0tl01kq 525 17 tube tube NN cord-010027-r0tl01kq 525 18 formation formation NN cord-010027-r0tl01kq 525 19 but but CC cord-010027-r0tl01kq 525 20 not not RB cord-010027-r0tl01kq 525 21 in in IN cord-010027-r0tl01kq 525 22 growth growth NN cord-010027-r0tl01kq 525 23 of of IN cord-010027-r0tl01kq 525 24 the the DT cord-010027-r0tl01kq 525 25 EA.hy926 ea.hy926 JJ cord-010027-r0tl01kq 525 26 endothelial endothelial JJ cord-010027-r0tl01kq 525 27 cell cell NN cord-010027-r0tl01kq 525 28 line line NN cord-010027-r0tl01kq 525 29 . . . cord-010027-r0tl01kq 526 1 Conclusions conclusion NNS cord-010027-r0tl01kq 526 2 : : : cord-010027-r0tl01kq 527 1 This this DT cord-010027-r0tl01kq 527 2 work work NN cord-010027-r0tl01kq 527 3 shows show VBZ cord-010027-r0tl01kq 527 4 a a DT cord-010027-r0tl01kq 527 5 possible possible JJ cord-010027-r0tl01kq 527 6 role role NN cord-010027-r0tl01kq 527 7 of of IN cord-010027-r0tl01kq 527 8 IGFIIR IGFIIR NNP cord-010027-r0tl01kq 527 9 / / SYM cord-010027-r0tl01kq 527 10 Man-6-P Man-6-P NNP cord-010027-r0tl01kq 527 11 in in IN cord-010027-r0tl01kq 527 12 the the DT cord-010027-r0tl01kq 527 13 process process NN cord-010027-r0tl01kq 527 14 of of IN cord-010027-r0tl01kq 527 15 neovascularisation neovascularisation NN cord-010027-r0tl01kq 527 16 of of IN cord-010027-r0tl01kq 527 17 GBM GBM NNP cord-010027-r0tl01kq 527 18 angiogenesis angiogenesis NN cord-010027-r0tl01kq 527 19 . . . cord-010027-r0tl01kq 528 1 Additional additional JJ cord-010027-r0tl01kq 528 2 investigations investigation NNS cord-010027-r0tl01kq 528 3 are be VBP cord-010027-r0tl01kq 528 4 required require VBN cord-010027-r0tl01kq 528 5 to to TO cord-010027-r0tl01kq 528 6 confirm confirm VB cord-010027-r0tl01kq 528 7 the the DT cord-010027-r0tl01kq 528 8 role role NN cord-010027-r0tl01kq 528 9 of of IN cord-010027-r0tl01kq 528 10 this this DT cord-010027-r0tl01kq 528 11 receptor receptor NN cord-010027-r0tl01kq 528 12 as as IN cord-010027-r0tl01kq 528 13 a a DT cord-010027-r0tl01kq 528 14 direct direct JJ cord-010027-r0tl01kq 528 15 actor actor NN cord-010027-r0tl01kq 528 16 of of IN cord-010027-r0tl01kq 528 17 angiogenesis angiogenesis NN cord-010027-r0tl01kq 528 18 in in IN cord-010027-r0tl01kq 528 19 GBM GBM NNP cord-010027-r0tl01kq 528 20 . . . cord-010027-r0tl01kq 529 1 Purpose purpose NN cord-010027-r0tl01kq 529 2 of of IN cord-010027-r0tl01kq 529 3 the the DT cord-010027-r0tl01kq 529 4 study study NN cord-010027-r0tl01kq 529 5 : : : cord-010027-r0tl01kq 529 6 Vasa Vasa NNP cord-010027-r0tl01kq 529 7 vasorum vasorum NNP cord-010027-r0tl01kq 529 8 ( ( -LRB- cord-010027-r0tl01kq 529 9 VV VV NNP cord-010027-r0tl01kq 529 10 ) ) -RRB- cord-010027-r0tl01kq 529 11 are be VBP cord-010027-r0tl01kq 529 12 microvessels microvessel NNS cord-010027-r0tl01kq 529 13 which which WDT cord-010027-r0tl01kq 529 14 supply supply VBP cord-010027-r0tl01kq 529 15 vessels vessel NNS cord-010027-r0tl01kq 529 16 that that WDT cord-010027-r0tl01kq 529 17 can can MD cord-010027-r0tl01kq 529 18 not not RB cord-010027-r0tl01kq 529 19 be be VB cord-010027-r0tl01kq 529 20 nourished nourish VBN cord-010027-r0tl01kq 529 21 by by IN cord-010027-r0tl01kq 529 22 diffusion diffusion NN cord-010027-r0tl01kq 529 23 from from IN cord-010027-r0tl01kq 529 24 their -PRON- PRP$ cord-010027-r0tl01kq 529 25 own own JJ cord-010027-r0tl01kq 529 26 lumina lumina NN cord-010027-r0tl01kq 529 27 . . . cord-010027-r0tl01kq 530 1 VV VV NNP cord-010027-r0tl01kq 530 2 are be VBP cord-010027-r0tl01kq 530 3 believed believe VBN cord-010027-r0tl01kq 530 4 to to TO cord-010027-r0tl01kq 530 5 be be VB cord-010027-r0tl01kq 530 6 a a DT cord-010027-r0tl01kq 530 7 key key JJ cord-010027-r0tl01kq 530 8 element element NN cord-010027-r0tl01kq 530 9 in in IN cord-010027-r0tl01kq 530 10 the the DT cord-010027-r0tl01kq 530 11 pathogenesis pathogenesis NN cord-010027-r0tl01kq 530 12 of of IN cord-010027-r0tl01kq 530 13 vascular vascular JJ cord-010027-r0tl01kq 530 14 diseases disease NNS cord-010027-r0tl01kq 530 15 . . . cord-010027-r0tl01kq 531 1 A a DT cord-010027-r0tl01kq 531 2 number number NN cord-010027-r0tl01kq 531 3 of of IN cord-010027-r0tl01kq 531 4 different different JJ cord-010027-r0tl01kq 531 5 imaging imaging NN cord-010027-r0tl01kq 531 6 methods method NNS cord-010027-r0tl01kq 531 7 have have VBP cord-010027-r0tl01kq 531 8 been be VBN cord-010027-r0tl01kq 531 9 used use VBN cord-010027-r0tl01kq 531 10 to to TO cord-010027-r0tl01kq 531 11 study study VB cord-010027-r0tl01kq 531 12 the the DT cord-010027-r0tl01kq 531 13 VV VV NNP cord-010027-r0tl01kq 532 1 but but CC cord-010027-r0tl01kq 532 2 there there EX cord-010027-r0tl01kq 532 3 is be VBZ cord-010027-r0tl01kq 532 4 still still RB cord-010027-r0tl01kq 532 5 no no DT cord-010027-r0tl01kq 532 6 definitive definitive JJ cord-010027-r0tl01kq 532 7 consensus consensus NN cord-010027-r0tl01kq 532 8 on on IN cord-010027-r0tl01kq 532 9 their -PRON- PRP$ cord-010027-r0tl01kq 532 10 structure structure NN cord-010027-r0tl01kq 532 11 . . . cord-010027-r0tl01kq 533 1 The the DT cord-010027-r0tl01kq 533 2 aim aim NN cord-010027-r0tl01kq 533 3 was be VBD cord-010027-r0tl01kq 533 4 to to TO cord-010027-r0tl01kq 533 5 describe describe VB cord-010027-r0tl01kq 533 6 the the DT cord-010027-r0tl01kq 533 7 normal normal JJ cord-010027-r0tl01kq 533 8 microvessel microvessel NN cord-010027-r0tl01kq 533 9 anatomy anatomy NN cord-010027-r0tl01kq 533 10 of of IN cord-010027-r0tl01kq 533 11 temporal temporal JJ cord-010027-r0tl01kq 533 12 arteries artery NNS cord-010027-r0tl01kq 533 13 . . . cord-010027-r0tl01kq 534 1 Methods method NNS cord-010027-r0tl01kq 534 2 : : : cord-010027-r0tl01kq 534 3 Human human JJ cord-010027-r0tl01kq 534 4 temporal temporal JJ cord-010027-r0tl01kq 534 5 artery artery NN cord-010027-r0tl01kq 534 6 , , , cord-010027-r0tl01kq 534 7 obtained obtain VBD cord-010027-r0tl01kq 534 8 following follow VBG cord-010027-r0tl01kq 534 9 routine routine JJ cord-010027-r0tl01kq 534 10 biopsy biopsy NN cord-010027-r0tl01kq 534 11 with with IN cord-010027-r0tl01kq 534 12 ethical ethical JJ cord-010027-r0tl01kq 534 13 approval approval NN cord-010027-r0tl01kq 534 14 and and CC cord-010027-r0tl01kq 534 15 patient patient NN cord-010027-r0tl01kq 534 16 consent consent NN cord-010027-r0tl01kq 534 17 . . . cord-010027-r0tl01kq 535 1 Samples sample NNS cord-010027-r0tl01kq 535 2 were be VBD cord-010027-r0tl01kq 535 3 embedded embed VBN cord-010027-r0tl01kq 535 4 into into IN cord-010027-r0tl01kq 535 5 paraffin paraffin NN cord-010027-r0tl01kq 535 6 blocks block NNS cord-010027-r0tl01kq 535 7 and and CC cord-010027-r0tl01kq 535 8 serially serially RB cord-010027-r0tl01kq 535 9 sectioned section VBN cord-010027-r0tl01kq 535 10 at at IN cord-010027-r0tl01kq 535 11 5 5 CD cord-010027-r0tl01kq 535 12 micron micron NN cord-010027-r0tl01kq 535 13 intervals interval NNS cord-010027-r0tl01kq 535 14 . . . cord-010027-r0tl01kq 536 1 Alternate alternate JJ cord-010027-r0tl01kq 536 2 sections section NNS cord-010027-r0tl01kq 536 3 were be VBD cord-010027-r0tl01kq 536 4 stained stain VBN cord-010027-r0tl01kq 536 5 with with IN cord-010027-r0tl01kq 536 6 H&E H&E NNP cord-010027-r0tl01kq 536 7 and and CC cord-010027-r0tl01kq 536 8 scanned scan VBD cord-010027-r0tl01kq 536 9 to to TO cord-010027-r0tl01kq 536 10 create create VB cord-010027-r0tl01kq 536 11 virtual virtual JJ cord-010027-r0tl01kq 536 12 slides slide NNS cord-010027-r0tl01kq 536 13 . . . cord-010027-r0tl01kq 537 1 The the DT cord-010027-r0tl01kq 537 2 slides slide NNS cord-010027-r0tl01kq 537 3 were be VBD cord-010027-r0tl01kq 537 4 aligned align VBN cord-010027-r0tl01kq 537 5 , , , cord-010027-r0tl01kq 537 6 VV VV NNP cord-010027-r0tl01kq 537 7 were be VBD cord-010027-r0tl01kq 537 8 segmented segmented JJ cord-010027-r0tl01kq 537 9 ( ( -LRB- cord-010027-r0tl01kq 537 10 annotated annotate VBN cord-010027-r0tl01kq 537 11 ) ) -RRB- cord-010027-r0tl01kq 537 12 and and CC cord-010027-r0tl01kq 537 13 iso iso NN cord-010027-r0tl01kq 537 14 - - : cord-010027-r0tl01kq 537 15 surfaced surface VBN cord-010027-r0tl01kq 537 16 to to TO cord-010027-r0tl01kq 537 17 generate generate VB cord-010027-r0tl01kq 537 18 3D 3d JJ cord-010027-r0tl01kq 537 19 reconstructions reconstruction NNS cord-010027-r0tl01kq 537 20 . . . cord-010027-r0tl01kq 538 1 Summary summary NN cord-010027-r0tl01kq 538 2 of of IN cord-010027-r0tl01kq 538 3 results result NNS cord-010027-r0tl01kq 538 4 : : : cord-010027-r0tl01kq 538 5 The the DT cord-010027-r0tl01kq 538 6 reconstruction reconstruction NN cord-010027-r0tl01kq 538 7 shows show VBZ cord-010027-r0tl01kq 538 8 the the DT cord-010027-r0tl01kq 538 9 structural structural JJ cord-010027-r0tl01kq 538 10 arrangement arrangement NN cord-010027-r0tl01kq 538 11 of of IN cord-010027-r0tl01kq 538 12 the the DT cord-010027-r0tl01kq 538 13 VV VV NNP cord-010027-r0tl01kq 538 14 as as IN cord-010027-r0tl01kq 538 15 a a DT cord-010027-r0tl01kq 538 16 complex complex JJ cord-010027-r0tl01kq 538 17 plexus plexus NN cord-010027-r0tl01kq 538 18 . . . cord-010027-r0tl01kq 539 1 No no DT cord-010027-r0tl01kq 539 2 connection connection NN cord-010027-r0tl01kq 539 3 to to IN cord-010027-r0tl01kq 539 4 the the DT cord-010027-r0tl01kq 539 5 vascular vascular JJ cord-010027-r0tl01kq 539 6 lumen lumen NN cord-010027-r0tl01kq 539 7 was be VBD cord-010027-r0tl01kq 539 8 visualised visualise VBN cord-010027-r0tl01kq 539 9 . . . cord-010027-r0tl01kq 540 1 In in IN cord-010027-r0tl01kq 540 2 this this DT cord-010027-r0tl01kq 540 3 segment segment NN cord-010027-r0tl01kq 540 4 a a DT cord-010027-r0tl01kq 540 5 hierarchical hierarchical JJ cord-010027-r0tl01kq 540 6 branching branch VBG cord-010027-r0tl01kq 540 7 structure structure NN cord-010027-r0tl01kq 540 8 was be VBD cord-010027-r0tl01kq 540 9 not not RB cord-010027-r0tl01kq 540 10 observed observe VBN cord-010027-r0tl01kq 540 11 . . . cord-010027-r0tl01kq 541 1 VV VV NNP cord-010027-r0tl01kq 541 2 were be VBD cord-010027-r0tl01kq 541 3 almost almost RB cord-010027-r0tl01kq 541 4 exclusively exclusively RB cord-010027-r0tl01kq 541 5 restricted restricted JJ cord-010027-r0tl01kq 541 6 to to IN cord-010027-r0tl01kq 541 7 the the DT cord-010027-r0tl01kq 541 8 adventitia adventitia NN cord-010027-r0tl01kq 541 9 of of IN cord-010027-r0tl01kq 541 10 the the DT cord-010027-r0tl01kq 541 11 vessel vessel NN cord-010027-r0tl01kq 541 12 wall wall NN cord-010027-r0tl01kq 541 13 . . . cord-010027-r0tl01kq 542 1 Mean mean JJ cord-010027-r0tl01kq 542 2 ± ± NNP cord-010027-r0tl01kq 542 3 SD sd NN cord-010027-r0tl01kq 542 4 area area NN cord-010027-r0tl01kq 542 5 of of IN cord-010027-r0tl01kq 542 6 the the DT cord-010027-r0tl01kq 542 7 VV VV NNP cord-010027-r0tl01kq 542 8 ( ( -LRB- cord-010027-r0tl01kq 542 9 n n NN cord-010027-r0tl01kq 542 10 = = SYM cord-010027-r0tl01kq 542 11 5283 5283 CD cord-010027-r0tl01kq 542 12 ) ) -RRB- cord-010027-r0tl01kq 542 13 is be VBZ cord-010027-r0tl01kq 542 14 2287.23µm2 2287.23µm2 NNP cord-010027-r0tl01kq 542 15 ( ( -LRB- cord-010027-r0tl01kq 542 16 ±4956.03 ±4956.03 NN cord-010027-r0tl01kq 542 17 ) ) -RRB- cord-010027-r0tl01kq 542 18 . . . cord-010027-r0tl01kq 543 1 The the DT cord-010027-r0tl01kq 543 2 mean mean JJ cord-010027-r0tl01kq 543 3 ± ± NNP cord-010027-r0tl01kq 543 4 SD sd NN cord-010027-r0tl01kq 543 5 number number NN cord-010027-r0tl01kq 543 6 of of IN cord-010027-r0tl01kq 543 7 vessels vessel NNS cord-010027-r0tl01kq 543 8 per per IN cord-010027-r0tl01kq 543 9 slide slide NN cord-010027-r0tl01kq 543 10 is be VBZ cord-010027-r0tl01kq 543 11 60.76 60.76 CD cord-010027-r0tl01kq 543 12 ( ( -LRB- cord-010027-r0tl01kq 543 13 ±15.37 ±15.37 NNP cord-010027-r0tl01kq 543 14 ) ) -RRB- cord-010027-r0tl01kq 543 15 . . . cord-010027-r0tl01kq 544 1 These these DT cord-010027-r0tl01kq 544 2 metrics metric NNS cord-010027-r0tl01kq 544 3 are be VBP cord-010027-r0tl01kq 544 4 based base VBN cord-010027-r0tl01kq 544 5 on on IN cord-010027-r0tl01kq 544 6 one one CD cord-010027-r0tl01kq 544 7 arterial arterial JJ cord-010027-r0tl01kq 544 8 specimen specimen NN cord-010027-r0tl01kq 544 9 . . . cord-010027-r0tl01kq 545 1 Conclusion conclusion NN cord-010027-r0tl01kq 545 2 : : : cord-010027-r0tl01kq 546 1 This this DT cord-010027-r0tl01kq 546 2 method method NN cord-010027-r0tl01kq 546 3 allows allow VBZ cord-010027-r0tl01kq 546 4 us -PRON- PRP cord-010027-r0tl01kq 546 5 to to TO cord-010027-r0tl01kq 546 6 study study VB cord-010027-r0tl01kq 546 7 the the DT cord-010027-r0tl01kq 546 8 three three CD cord-010027-r0tl01kq 546 9 - - HYPH cord-010027-r0tl01kq 546 10 dimensional dimensional JJ cord-010027-r0tl01kq 546 11 spatial spatial JJ cord-010027-r0tl01kq 546 12 relationships relationship NNS cord-010027-r0tl01kq 546 13 of of IN cord-010027-r0tl01kq 546 14 microvessels microvessel NNS cord-010027-r0tl01kq 546 15 within within IN cord-010027-r0tl01kq 546 16 arterial arterial JJ cord-010027-r0tl01kq 546 17 specimens specimen NNS cord-010027-r0tl01kq 546 18 . . . cord-010027-r0tl01kq 547 1 Furthermore furthermore RB cord-010027-r0tl01kq 547 2 , , , cord-010027-r0tl01kq 547 3 metric metric JJ cord-010027-r0tl01kq 547 4 data datum NNS cord-010027-r0tl01kq 547 5 generated generate VBN cord-010027-r0tl01kq 547 6 in in IN cord-010027-r0tl01kq 547 7 the the DT cord-010027-r0tl01kq 547 8 process process NN cord-010027-r0tl01kq 547 9 can can MD cord-010027-r0tl01kq 547 10 support support VB cord-010027-r0tl01kq 547 11 the the DT cord-010027-r0tl01kq 547 12 3D 3d JJ cord-010027-r0tl01kq 547 13 images image NNS cord-010027-r0tl01kq 547 14 to to TO cord-010027-r0tl01kq 547 15 study study VB cord-010027-r0tl01kq 547 16 the the DT cord-010027-r0tl01kq 547 17 microvasculature microvasculature NN cord-010027-r0tl01kq 547 18 . . . cord-010027-r0tl01kq 548 1 This this DT cord-010027-r0tl01kq 548 2 method method NN cord-010027-r0tl01kq 548 3 will will MD cord-010027-r0tl01kq 548 4 be be VB cord-010027-r0tl01kq 548 5 applied apply VBN cord-010027-r0tl01kq 548 6 to to IN cord-010027-r0tl01kq 548 7 diseased diseased JJ cord-010027-r0tl01kq 548 8 arteries artery NNS cord-010027-r0tl01kq 548 9 in in IN cord-010027-r0tl01kq 548 10 future future NN cord-010027-r0tl01kq 548 11 to to TO cord-010027-r0tl01kq 548 12 generate generate VB cord-010027-r0tl01kq 548 13 novel novel JJ cord-010027-r0tl01kq 548 14 hypotheses hypothesis NNS cord-010027-r0tl01kq 548 15 about about IN cord-010027-r0tl01kq 548 16 the the DT cord-010027-r0tl01kq 548 17 inflammatory inflammatory JJ cord-010027-r0tl01kq 548 18 process process NN cord-010027-r0tl01kq 548 19 . . . cord-010027-r0tl01kq 549 1 Acknowledgements acknowledgement NNS cord-010027-r0tl01kq 549 2 : : : cord-010027-r0tl01kq 550 1 This this DT cord-010027-r0tl01kq 550 2 research research NN cord-010027-r0tl01kq 550 3 was be VBD cord-010027-r0tl01kq 550 4 supported support VBN cord-010027-r0tl01kq 550 5 by by IN cord-010027-r0tl01kq 550 6 a a DT cord-010027-r0tl01kq 550 7 PathSoc PathSoc NNP cord-010027-r0tl01kq 550 8 intercalated intercalate VBN cord-010027-r0tl01kq 550 9 studentship studentship NN cord-010027-r0tl01kq 550 10 . . . cord-010027-r0tl01kq 551 1 Purpose purpose NN cord-010027-r0tl01kq 551 2 of of IN cord-010027-r0tl01kq 551 3 the the DT cord-010027-r0tl01kq 551 4 Study study NN cord-010027-r0tl01kq 551 5 : : : cord-010027-r0tl01kq 551 6 It -PRON- PRP cord-010027-r0tl01kq 551 7 is be VBZ cord-010027-r0tl01kq 551 8 controversial controversial JJ cord-010027-r0tl01kq 551 9 whether whether IN cord-010027-r0tl01kq 551 10 mesothelioma mesothelioma NN cord-010027-r0tl01kq 551 11 can can MD cord-010027-r0tl01kq 551 12 be be VB cord-010027-r0tl01kq 551 13 diagnosed diagnose VBN cord-010027-r0tl01kq 551 14 with with IN cord-010027-r0tl01kq 551 15 confidence confidence NN cord-010027-r0tl01kq 551 16 in in IN cord-010027-r0tl01kq 551 17 effusion effusion NN cord-010027-r0tl01kq 551 18 cytology cytology NN cord-010027-r0tl01kq 551 19 and and CC cord-010027-r0tl01kq 551 20 therefore therefore RB cord-010027-r0tl01kq 551 21 an an DT cord-010027-r0tl01kq 551 22 ancillary ancillary JJ cord-010027-r0tl01kq 551 23 marker marker NN cord-010027-r0tl01kq 551 24 of of IN cord-010027-r0tl01kq 551 25 malignant malignant JJ cord-010027-r0tl01kq 551 26 mesothelial mesothelial JJ cord-010027-r0tl01kq 551 27 cells cell NNS cord-010027-r0tl01kq 551 28 would would MD cord-010027-r0tl01kq 551 29 be be VB cord-010027-r0tl01kq 551 30 clinically clinically RB cord-010027-r0tl01kq 551 31 valuable valuable JJ cord-010027-r0tl01kq 551 32 . . . cord-010027-r0tl01kq 552 1 BRCA-1 BRCA-1 NNP cord-010027-r0tl01kq 552 2 associated associated JJ cord-010027-r0tl01kq 552 3 protein protein NN cord-010027-r0tl01kq 552 4 ( ( -LRB- cord-010027-r0tl01kq 552 5 BAP1 BAP1 NNP cord-010027-r0tl01kq 552 6 ) ) -RRB- cord-010027-r0tl01kq 552 7 is be VBZ cord-010027-r0tl01kq 552 8 a a DT cord-010027-r0tl01kq 552 9 tumour tumour NN cord-010027-r0tl01kq 552 10 suppressor suppressor NN cord-010027-r0tl01kq 552 11 gene gene NN cord-010027-r0tl01kq 552 12 which which WDT cord-010027-r0tl01kq 552 13 shows show VBZ cord-010027-r0tl01kq 552 14 biallelic biallelic NN cord-010027-r0tl01kq 552 15 inactivation inactivation NN cord-010027-r0tl01kq 552 16 in in IN cord-010027-r0tl01kq 552 17 approximately approximately RB cord-010027-r0tl01kq 552 18 half half NN cord-010027-r0tl01kq 552 19 of of IN cord-010027-r0tl01kq 552 20 all all DT cord-010027-r0tl01kq 552 21 mesotheliomas mesotheliomas NN cord-010027-r0tl01kq 552 22 . . . cord-010027-r0tl01kq 553 1 BAP1 BAP1 NNP cord-010027-r0tl01kq 553 2 expression expression NN cord-010027-r0tl01kq 553 3 is be VBZ cord-010027-r0tl01kq 553 4 commonly commonly RB cord-010027-r0tl01kq 553 5 lost lose VBN cord-010027-r0tl01kq 553 6 in in IN cord-010027-r0tl01kq 553 7 mesothelioma mesothelioma NN cord-010027-r0tl01kq 553 8 . . . cord-010027-r0tl01kq 554 1 We -PRON- PRP cord-010027-r0tl01kq 554 2 investigated investigate VBD cord-010027-r0tl01kq 554 3 whether whether IN cord-010027-r0tl01kq 554 4 loss loss NN cord-010027-r0tl01kq 554 5 of of IN cord-010027-r0tl01kq 554 6 BAP1 BAP1 NNP cord-010027-r0tl01kq 554 7 expression expression NN cord-010027-r0tl01kq 554 8 can can MD cord-010027-r0tl01kq 554 9 be be VB cord-010027-r0tl01kq 554 10 used use VBN cord-010027-r0tl01kq 554 11 to to TO cord-010027-r0tl01kq 554 12 support support VB cord-010027-r0tl01kq 554 13 a a DT cord-010027-r0tl01kq 554 14 diagnosis diagnosis NN cord-010027-r0tl01kq 554 15 of of IN cord-010027-r0tl01kq 554 16 mesothelioma mesothelioma NN cord-010027-r0tl01kq 554 17 in in IN cord-010027-r0tl01kq 554 18 effusion effusion NN cord-010027-r0tl01kq 554 19 cytology cytology NN cord-010027-r0tl01kq 554 20 . . . cord-010027-r0tl01kq 555 1 Methods method NNS cord-010027-r0tl01kq 555 2 : : : cord-010027-r0tl01kq 555 3 Immunohistochemistry Immunohistochemistry NNP cord-010027-r0tl01kq 555 4 ( ( -LRB- cord-010027-r0tl01kq 555 5 IHC IHC NNP cord-010027-r0tl01kq 555 6 ) ) -RRB- cord-010027-r0tl01kq 555 7 for for IN cord-010027-r0tl01kq 555 8 BAP1 BAP1 NNP cord-010027-r0tl01kq 555 9 was be VBD cord-010027-r0tl01kq 555 10 performed perform VBN cord-010027-r0tl01kq 555 11 on on IN cord-010027-r0tl01kq 555 12 cell cell NN cord-010027-r0tl01kq 555 13 blocks block NNS cord-010027-r0tl01kq 555 14 from from IN cord-010027-r0tl01kq 555 15 effusions effusion NNS cord-010027-r0tl01kq 555 16 associated associate VBN cord-010027-r0tl01kq 555 17 with with IN cord-010027-r0tl01kq 555 18 confirmed confirm VBN cord-010027-r0tl01kq 555 19 mesothelioma mesothelioma NN cord-010027-r0tl01kq 555 20 cases case NNS cord-010027-r0tl01kq 555 21 , , , cord-010027-r0tl01kq 555 22 effusions effusion NNS cord-010027-r0tl01kq 555 23 containing contain VBG cord-010027-r0tl01kq 555 24 mesothelial mesothelial JJ cord-010027-r0tl01kq 555 25 cell cell NN cord-010027-r0tl01kq 555 26 atypia atypia NN cord-010027-r0tl01kq 555 27 , , , cord-010027-r0tl01kq 555 28 benign benign JJ cord-010027-r0tl01kq 555 29 effusions effusion NNS cord-010027-r0tl01kq 555 30 , , , cord-010027-r0tl01kq 555 31 and and CC cord-010027-r0tl01kq 555 32 effusions effusion NNS cord-010027-r0tl01kq 555 33 from from IN cord-010027-r0tl01kq 555 34 patients patient NNS cord-010027-r0tl01kq 555 35 with with IN cord-010027-r0tl01kq 555 36 lung lung NN cord-010027-r0tl01kq 555 37 adenocarcinoma adenocarcinoma NN cord-010027-r0tl01kq 555 38 . . . cord-010027-r0tl01kq 556 1 Results result NNS cord-010027-r0tl01kq 556 2 : : : cord-010027-r0tl01kq 556 3 IHC IHC NNP cord-010027-r0tl01kq 556 4 for for IN cord-010027-r0tl01kq 556 5 BAP1 BAP1 NNP cord-010027-r0tl01kq 556 6 was be VBD cord-010027-r0tl01kq 556 7 performed perform VBN cord-010027-r0tl01kq 556 8 on on IN cord-010027-r0tl01kq 556 9 75 75 CD cord-010027-r0tl01kq 556 10 cases case NNS cord-010027-r0tl01kq 556 11 of of IN cord-010027-r0tl01kq 556 12 confirmed confirm VBN cord-010027-r0tl01kq 556 13 mesothelioma mesothelioma NN cord-010027-r0tl01kq 556 14 . . . cord-010027-r0tl01kq 557 1 43 43 CD cord-010027-r0tl01kq 557 2 ( ( -LRB- cord-010027-r0tl01kq 557 3 57.3 57.3 CD cord-010027-r0tl01kq 557 4 % % NN cord-010027-r0tl01kq 557 5 ) ) -RRB- cord-010027-r0tl01kq 557 6 showed show VBD cord-010027-r0tl01kq 557 7 negative negative JJ cord-010027-r0tl01kq 557 8 staining staining NN cord-010027-r0tl01kq 557 9 in in IN cord-010027-r0tl01kq 557 10 the the DT cord-010027-r0tl01kq 557 11 presence presence NN cord-010027-r0tl01kq 557 12 of of IN cord-010027-r0tl01kq 557 13 an an DT cord-010027-r0tl01kq 557 14 internal internal JJ cord-010027-r0tl01kq 557 15 positive positive JJ cord-010027-r0tl01kq 557 16 control control NN cord-010027-r0tl01kq 557 17 . . . cord-010027-r0tl01kq 558 1 In in IN cord-010027-r0tl01kq 558 2 57 57 CD cord-010027-r0tl01kq 558 3 effusions effusion NNS cord-010027-r0tl01kq 558 4 considered consider VBN cord-010027-r0tl01kq 558 5 to to TO cord-010027-r0tl01kq 558 6 have have VB cord-010027-r0tl01kq 558 7 atypical atypical JJ cord-010027-r0tl01kq 558 8 mesothelial mesothelial JJ cord-010027-r0tl01kq 558 9 cells cell NNS cord-010027-r0tl01kq 558 10 in in IN cord-010027-r0tl01kq 558 11 the the DT cord-010027-r0tl01kq 558 12 absence absence NN cord-010027-r0tl01kq 558 13 of of IN cord-010027-r0tl01kq 558 14 definitive definitive JJ cord-010027-r0tl01kq 558 15 diagnosis diagnosis NN cord-010027-r0tl01kq 558 16 of of IN cord-010027-r0tl01kq 558 17 mesothelioma mesothelioma NN cord-010027-r0tl01kq 558 18 , , , cord-010027-r0tl01kq 558 19 8 8 CD cord-010027-r0tl01kq 558 20 cases case NNS cord-010027-r0tl01kq 558 21 demonstrated demonstrate VBD cord-010027-r0tl01kq 558 22 negative negative JJ cord-010027-r0tl01kq 558 23 staining staining NN cord-010027-r0tl01kq 558 24 for for IN cord-010027-r0tl01kq 558 25 BAP1 BAP1 NNP cord-010027-r0tl01kq 558 26 . . . cord-010027-r0tl01kq 559 1 On on IN cord-010027-r0tl01kq 559 2 follow follow NN cord-010027-r0tl01kq 559 3 up up RP cord-010027-r0tl01kq 559 4 , , , cord-010027-r0tl01kq 559 5 6 6 CD cord-010027-r0tl01kq 559 6 of of IN cord-010027-r0tl01kq 559 7 these these DT cord-010027-r0tl01kq 559 8 patients patient NNS cord-010027-r0tl01kq 559 9 received receive VBD cord-010027-r0tl01kq 559 10 a a DT cord-010027-r0tl01kq 559 11 definitive definitive JJ cord-010027-r0tl01kq 559 12 diagnosis diagnosis NN cord-010027-r0tl01kq 559 13 of of IN cord-010027-r0tl01kq 559 14 mesothelioma mesothelioma NN cord-010027-r0tl01kq 559 15 in in IN cord-010027-r0tl01kq 559 16 the the DT cord-010027-r0tl01kq 559 17 subsequent subsequent JJ cord-010027-r0tl01kq 559 18 14 14 CD cord-010027-r0tl01kq 559 19 months month NNS cord-010027-r0tl01kq 559 20 ( ( -LRB- cord-010027-r0tl01kq 559 21 2 2 CD cord-010027-r0tl01kq 559 22 were be VBD cord-010027-r0tl01kq 559 23 lost lose VBN cord-010027-r0tl01kq 559 24 to to TO cord-010027-r0tl01kq 559 25 follow follow VB cord-010027-r0tl01kq 559 26 up up RP cord-010027-r0tl01kq 559 27 immediately immediately RB cord-010027-r0tl01kq 559 28 ) ) -RRB- cord-010027-r0tl01kq 559 29 . . . cord-010027-r0tl01kq 560 1 Only only RB cord-010027-r0tl01kq 560 2 5 5 CD cord-010027-r0tl01kq 560 3 of of IN cord-010027-r0tl01kq 560 4 100 100 CD cord-010027-r0tl01kq 560 5 consecutive consecutive JJ cord-010027-r0tl01kq 560 6 benign benign JJ cord-010027-r0tl01kq 560 7 effusions effusion NNS cord-010027-r0tl01kq 560 8 were be VBD cord-010027-r0tl01kq 560 9 interpreted interpret VBN cord-010027-r0tl01kq 560 10 as as IN cord-010027-r0tl01kq 560 11 BAP1 BAP1 NNP cord-010027-r0tl01kq 560 12 negative negative JJ cord-010027-r0tl01kq 560 13 . . . cord-010027-r0tl01kq 561 1 47 47 CD cord-010027-r0tl01kq 561 2 patients patient NNS cord-010027-r0tl01kq 561 3 with with IN cord-010027-r0tl01kq 561 4 confirmed confirm VBN cord-010027-r0tl01kq 561 5 adenocarcinoma adenocarcinoma NN cord-010027-r0tl01kq 561 6 demonstrated demonstrate VBD cord-010027-r0tl01kq 561 7 positive positive JJ cord-010027-r0tl01kq 561 8 staining staining NN cord-010027-r0tl01kq 561 9 for for IN cord-010027-r0tl01kq 561 10 BAP1 BAP1 NNP cord-010027-r0tl01kq 561 11 . . . cord-010027-r0tl01kq 562 1 Conclusion conclusion NN cord-010027-r0tl01kq 562 2 : : : cord-010027-r0tl01kq 563 1 We -PRON- PRP cord-010027-r0tl01kq 563 2 conclude conclude VBP cord-010027-r0tl01kq 563 3 that that IN cord-010027-r0tl01kq 563 4 loss loss NN cord-010027-r0tl01kq 563 5 of of IN cord-010027-r0tl01kq 563 6 BAP1 BAP1 NNP cord-010027-r0tl01kq 563 7 expression expression NN cord-010027-r0tl01kq 563 8 in in IN cord-010027-r0tl01kq 563 9 effusion effusion NN cord-010027-r0tl01kq 563 10 cytology cytology NN cord-010027-r0tl01kq 563 11 is be VBZ cord-010027-r0tl01kq 563 12 quite quite RB cord-010027-r0tl01kq 563 13 specific specific JJ cord-010027-r0tl01kq 563 14 for for IN cord-010027-r0tl01kq 563 15 mesothelioma mesothelioma NN cord-010027-r0tl01kq 563 16 . . . cord-010027-r0tl01kq 564 1 Whilst whilst IN cord-010027-r0tl01kq 564 2 it -PRON- PRP cord-010027-r0tl01kq 564 3 is be VBZ cord-010027-r0tl01kq 564 4 not not RB cord-010027-r0tl01kq 564 5 definitive definitive JJ cord-010027-r0tl01kq 564 6 , , , cord-010027-r0tl01kq 564 7 it -PRON- PRP cord-010027-r0tl01kq 564 8 can can MD cord-010027-r0tl01kq 564 9 be be VB cord-010027-r0tl01kq 564 10 used use VBN cord-010027-r0tl01kq 564 11 to to TO cord-010027-r0tl01kq 564 12 support support VB cord-010027-r0tl01kq 564 13 the the DT cord-010027-r0tl01kq 564 14 diagnosis diagnosis NN cord-010027-r0tl01kq 564 15 of of IN cord-010027-r0tl01kq 564 16 mesothelioma mesothelioma NN cord-010027-r0tl01kq 564 17 in in IN cord-010027-r0tl01kq 564 18 atypical atypical JJ cord-010027-r0tl01kq 564 19 effusions effusion NNS cord-010027-r0tl01kq 564 20 . . . cord-010027-r0tl01kq 565 1 We -PRON- PRP cord-010027-r0tl01kq 565 2 caution caution VBP cord-010027-r0tl01kq 565 3 that that DT cord-010027-r0tl01kq 565 4 interpretation interpretation NN cord-010027-r0tl01kq 565 5 of of IN cord-010027-r0tl01kq 565 6 BAP1 BAP1 NNP cord-010027-r0tl01kq 565 7 IHC IHC NNP cord-010027-r0tl01kq 565 8 on on IN cord-010027-r0tl01kq 565 9 cell cell NN cord-010027-r0tl01kq 565 10 block block NN cord-010027-r0tl01kq 565 11 may may MD cord-010027-r0tl01kq 565 12 be be VB cord-010027-r0tl01kq 565 13 difficult difficult JJ cord-010027-r0tl01kq 565 14 and and CC cord-010027-r0tl01kq 565 15 that that IN cord-010027-r0tl01kq 565 16 convincing convincing JJ cord-010027-r0tl01kq 565 17 positive positive JJ cord-010027-r0tl01kq 565 18 staining staining NN cord-010027-r0tl01kq 565 19 in in IN cord-010027-r0tl01kq 565 20 non non JJ cord-010027-r0tl01kq 565 21 - - JJ cord-010027-r0tl01kq 565 22 neoplastic neoplastic JJ cord-010027-r0tl01kq 565 23 cells cell NNS cord-010027-r0tl01kq 565 24 is be VBZ cord-010027-r0tl01kq 565 25 required require VBN cord-010027-r0tl01kq 565 26 before before IN cord-010027-r0tl01kq 565 27 atypical atypical JJ cord-010027-r0tl01kq 565 28 cells cell NNS cord-010027-r0tl01kq 565 29 are be VBP cord-010027-r0tl01kq 565 30 considered consider VBN cord-010027-r0tl01kq 565 31 negative negative JJ cord-010027-r0tl01kq 565 32 . . . cord-010027-r0tl01kq 566 1 We -PRON- PRP cord-010027-r0tl01kq 566 2 also also RB cord-010027-r0tl01kq 566 3 note note VBP cord-010027-r0tl01kq 566 4 that that IN cord-010027-r0tl01kq 566 5 BAP1 BAP1 NNP cord-010027-r0tl01kq 566 6 loss loss NN cord-010027-r0tl01kq 566 7 is be VBZ cord-010027-r0tl01kq 566 8 not not RB cord-010027-r0tl01kq 566 9 a a DT cord-010027-r0tl01kq 566 10 sensitive sensitive JJ cord-010027-r0tl01kq 566 11 test test NN cord-010027-r0tl01kq 566 12 and and CC cord-010027-r0tl01kq 566 13 can can MD cord-010027-r0tl01kq 566 14 not not RB cord-010027-r0tl01kq 566 15 be be VB cord-010027-r0tl01kq 566 16 used use VBN cord-010027-r0tl01kq 566 17 to to TO cord-010027-r0tl01kq 566 18 exclude exclude VB cord-010027-r0tl01kq 566 19 mesothelioma mesothelioma NN cord-010027-r0tl01kq 566 20 . . . cord-010027-r0tl01kq 567 1 The the DT cord-010027-r0tl01kq 567 2 South South NNP cord-010027-r0tl01kq 567 3 - - HYPH cord-010027-r0tl01kq 567 4 East East NNP cord-010027-r0tl01kq 567 5 of of IN cord-010027-r0tl01kq 567 6 Scotland Scotland NNP cord-010027-r0tl01kq 567 7 Experience Experience NNP cord-010027-r0tl01kq 567 8 on on IN cord-010027-r0tl01kq 567 9 the the DT cord-010027-r0tl01kq 567 10 Molecular Molecular NNP cord-010027-r0tl01kq 567 11 Detection Detection NNP cord-010027-r0tl01kq 567 12 of of IN cord-010027-r0tl01kq 567 13 EGFR EGFR NNP cord-010027-r0tl01kq 567 14 , , , cord-010027-r0tl01kq 567 15 KRAS KRAS NNP cord-010027-r0tl01kq 567 16 and and CC cord-010027-r0tl01kq 567 17 ALK ALK NNP cord-010027-r0tl01kq 567 18 Mutations Mutations NNPS cord-010027-r0tl01kq 567 19 in in IN cord-010027-r0tl01kq 567 20 Lung Lung NNP cord-010027-r0tl01kq 567 21 Adenocarcinomas Adenocarcinomas NNP cord-010027-r0tl01kq 567 22 P P NNP cord-010027-r0tl01kq 567 23 Y Y NNP cord-010027-r0tl01kq 567 24 Kheng Kheng NNP cord-010027-r0tl01kq 567 25 1 1 CD cord-010027-r0tl01kq 567 26 ; ; : cord-010027-r0tl01kq 567 27 L L NNP cord-010027-r0tl01kq 567 28 Williams Williams NNP cord-010027-r0tl01kq 567 29 2 2 CD cord-010027-r0tl01kq 567 30 ; ; : cord-010027-r0tl01kq 567 31 K K NNP cord-010027-r0tl01kq 567 32 Walsh Walsh NNP cord-010027-r0tl01kq 567 33 1 1 CD cord-010027-r0tl01kq 567 34 ; ; : cord-010027-r0tl01kq 567 35 J J NNP cord-010027-r0tl01kq 567 36 Fairley Fairley NNP cord-010027-r0tl01kq 567 37 1 1 CD cord-010027-r0tl01kq 567 38 ; ; : cord-010027-r0tl01kq 567 39 S S NNP cord-010027-r0tl01kq 567 40 Camus Camus NNP cord-010027-r0tl01kq 567 41 1 1 CD cord-010027-r0tl01kq 567 42 ; ; : cord-010027-r0tl01kq 567 43 L L NNP cord-010027-r0tl01kq 567 44 Gilroy Gilroy NNP cord-010027-r0tl01kq 567 45 1 1 CD cord-010027-r0tl01kq 567 46 ; ; : cord-010027-r0tl01kq 567 47 K K NNP cord-010027-r0tl01kq 567 48 Gilmour Gilmour NNP cord-010027-r0tl01kq 567 49 1 1 CD cord-010027-r0tl01kq 567 50 ; ; : cord-010027-r0tl01kq 567 51 D D NNP cord-010027-r0tl01kq 567 52 Stirling Stirling NNP cord-010027-r0tl01kq 567 53 1 1 CD cord-010027-r0tl01kq 567 54 ; ; : cord-010027-r0tl01kq 567 55 W W NNP cord-010027-r0tl01kq 567 56 Wallace Wallace NNP cord-010027-r0tl01kq 567 57 1 1 CD cord-010027-r0tl01kq 567 58 ; ; : cord-010027-r0tl01kq 567 59 D D NNP cord-010027-r0tl01kq 567 60 Harrison Harrison NNP cord-010027-r0tl01kq 567 61 1 1 CD cord-010027-r0tl01kq 567 62 ; ; : cord-010027-r0tl01kq 568 1 A a DT cord-010027-r0tl01kq 568 2 Oniscu Oniscu NNP cord-010027-r0tl01kq 568 3 1 1 CD cord-010027-r0tl01kq 568 4 1 1 CD cord-010027-r0tl01kq 568 5 Royal Royal NNP cord-010027-r0tl01kq 568 6 Infirmary Infirmary NNP cord-010027-r0tl01kq 568 7 of of IN cord-010027-r0tl01kq 568 8 Edinburgh Edinburgh NNP cord-010027-r0tl01kq 568 9 , , , cord-010027-r0tl01kq 568 10 Edinburgh Edinburgh NNP cord-010027-r0tl01kq 568 11 , , , cord-010027-r0tl01kq 568 12 UK UK NNP cord-010027-r0tl01kq 568 13 ; ; : cord-010027-r0tl01kq 568 14 2 2 LS cord-010027-r0tl01kq 568 15 The the DT cord-010027-r0tl01kq 568 16 University University NNP cord-010027-r0tl01kq 568 17 of of IN cord-010027-r0tl01kq 568 18 Edinburgh Edinburgh NNP cord-010027-r0tl01kq 568 19 , , , cord-010027-r0tl01kq 568 20 Edinburgh Edinburgh NNP cord-010027-r0tl01kq 568 21 , , , cord-010027-r0tl01kq 568 22 UK UK NNP cord-010027-r0tl01kq 569 1 The the DT cord-010027-r0tl01kq 569 2 approval approval NN cord-010027-r0tl01kq 569 3 of of IN cord-010027-r0tl01kq 569 4 novel novel NN cord-010027-r0tl01kq 569 5 targeted target VBN cord-010027-r0tl01kq 569 6 treatments treatment NNS cord-010027-r0tl01kq 569 7 for for IN cord-010027-r0tl01kq 569 8 EGFR egfr NN cord-010027-r0tl01kq 569 9 - - HYPH cord-010027-r0tl01kq 569 10 positive positive JJ cord-010027-r0tl01kq 569 11 and and CC cord-010027-r0tl01kq 569 12 ALK alk NN cord-010027-r0tl01kq 569 13 - - HYPH cord-010027-r0tl01kq 569 14 positive positive JJ cord-010027-r0tl01kq 569 15 non non JJ cord-010027-r0tl01kq 569 16 - - JJ cord-010027-r0tl01kq 569 17 small small JJ cord-010027-r0tl01kq 569 18 cell cell NN cord-010027-r0tl01kq 569 19 lung lung NN cord-010027-r0tl01kq 569 20 cancer cancer NN cord-010027-r0tl01kq 569 21 ( ( -LRB- cord-010027-r0tl01kq 569 22 NSCLC NSCLC NNP cord-010027-r0tl01kq 569 23 ) ) -RRB- cord-010027-r0tl01kq 569 24 has have VBZ cord-010027-r0tl01kq 569 25 led lead VBN cord-010027-r0tl01kq 569 26 to to IN cord-010027-r0tl01kq 569 27 the the DT cord-010027-r0tl01kq 569 28 increased increase VBN cord-010027-r0tl01kq 569 29 requirement requirement NN cord-010027-r0tl01kq 569 30 for for IN cord-010027-r0tl01kq 569 31 mutation mutation NN cord-010027-r0tl01kq 569 32 testing testing NN cord-010027-r0tl01kq 569 33 services service NNS cord-010027-r0tl01kq 569 34 in in IN cord-010027-r0tl01kq 569 35 South South NNP cord-010027-r0tl01kq 569 36 East East NNP cord-010027-r0tl01kq 569 37 of of IN cord-010027-r0tl01kq 569 38 Scotland Scotland NNP cord-010027-r0tl01kq 569 39 . . . cord-010027-r0tl01kq 570 1 EGFR EGFR NNP cord-010027-r0tl01kq 570 2 mutations mutation NNS cord-010027-r0tl01kq 570 3 are be VBP cord-010027-r0tl01kq 570 4 typically typically RB cord-010027-r0tl01kq 570 5 found find VBN cord-010027-r0tl01kq 570 6 in in IN cord-010027-r0tl01kq 570 7 females female NNS cord-010027-r0tl01kq 570 8 , , , cord-010027-r0tl01kq 570 9 Asians Asians NNPS cord-010027-r0tl01kq 570 10 and and CC cord-010027-r0tl01kq 570 11 never never RB cord-010027-r0tl01kq 570 12 smokers smoker NNS cord-010027-r0tl01kq 570 13 whereas whereas IN cord-010027-r0tl01kq 570 14 KRAS kra NNS cord-010027-r0tl01kq 570 15 mutations mutation NNS cord-010027-r0tl01kq 570 16 are be VBP cord-010027-r0tl01kq 570 17 associated associate VBN cord-010027-r0tl01kq 570 18 with with IN cord-010027-r0tl01kq 570 19 smoking smoking NN cord-010027-r0tl01kq 570 20 . . . cord-010027-r0tl01kq 571 1 ALK ALK NNP cord-010027-r0tl01kq 571 2 rearrangements rearrangement NNS cord-010027-r0tl01kq 571 3 are be VBP cord-010027-r0tl01kq 571 4 commonly commonly RB cord-010027-r0tl01kq 571 5 found find VBN cord-010027-r0tl01kq 571 6 in in IN cord-010027-r0tl01kq 571 7 younger young JJR cord-010027-r0tl01kq 571 8 patients patient NNS cord-010027-r0tl01kq 571 9 and and CC cord-010027-r0tl01kq 571 10 never never RB cord-010027-r0tl01kq 571 11 smokers smoker NNS cord-010027-r0tl01kq 571 12 . . . cord-010027-r0tl01kq 572 1 This this DT cord-010027-r0tl01kq 572 2 study study NN cord-010027-r0tl01kq 572 3 aimed aim VBD cord-010027-r0tl01kq 572 4 to to TO cord-010027-r0tl01kq 572 5 determine determine VB cord-010027-r0tl01kq 572 6 the the DT cord-010027-r0tl01kq 572 7 prevalence prevalence NN cord-010027-r0tl01kq 572 8 of of IN cord-010027-r0tl01kq 572 9 EGFR EGFR NNP cord-010027-r0tl01kq 572 10 , , , cord-010027-r0tl01kq 572 11 KRAS KRAS NNP cord-010027-r0tl01kq 572 12 and and CC cord-010027-r0tl01kq 572 13 ALK ALK NNP cord-010027-r0tl01kq 572 14 mutations mutation NNS cord-010027-r0tl01kq 572 15 in in IN cord-010027-r0tl01kq 572 16 South South NNP cord-010027-r0tl01kq 572 17 East East NNP cord-010027-r0tl01kq 572 18 of of IN cord-010027-r0tl01kq 572 19 Scotland Scotland NNP cord-010027-r0tl01kq 572 20 and and CC cord-010027-r0tl01kq 572 21 to to TO cord-010027-r0tl01kq 572 22 evaluate evaluate VB cord-010027-r0tl01kq 572 23 our -PRON- PRP$ cord-010027-r0tl01kq 572 24 experience experience NN cord-010027-r0tl01kq 572 25 in in IN cord-010027-r0tl01kq 572 26 testing testing NN cord-010027-r0tl01kq 572 27 of of IN cord-010027-r0tl01kq 572 28 ALK ALK NNP cord-010027-r0tl01kq 572 29 with with IN cord-010027-r0tl01kq 572 30 IHC IHC NNP cord-010027-r0tl01kq 572 31 and and CC cord-010027-r0tl01kq 572 32 FISH fish NN cord-010027-r0tl01kq 572 33 . . . cord-010027-r0tl01kq 573 1 Data datum NNS cord-010027-r0tl01kq 573 2 of of IN cord-010027-r0tl01kq 573 3 all all DT cord-010027-r0tl01kq 573 4 patients patient NNS cord-010027-r0tl01kq 573 5 tested test VBN cord-010027-r0tl01kq 573 6 were be VBD cord-010027-r0tl01kq 573 7 collected collect VBN cord-010027-r0tl01kq 573 8 retrospectively retrospectively RB cord-010027-r0tl01kq 573 9 from from IN cord-010027-r0tl01kq 573 10 clinical clinical JJ cord-010027-r0tl01kq 573 11 records record NNS cord-010027-r0tl01kq 573 12 . . . cord-010027-r0tl01kq 574 1 From from IN cord-010027-r0tl01kq 574 2 January January NNP cord-010027-r0tl01kq 574 3 2011 2011 CD cord-010027-r0tl01kq 574 4 to to IN cord-010027-r0tl01kq 574 5 May May NNP cord-010027-r0tl01kq 574 6 2014 2014 CD cord-010027-r0tl01kq 574 7 , , , cord-010027-r0tl01kq 574 8 we -PRON- PRP cord-010027-r0tl01kq 574 9 reported report VBD cord-010027-r0tl01kq 574 10 mutation mutation NN cord-010027-r0tl01kq 574 11 rates rate NNS cord-010027-r0tl01kq 574 12 of of IN cord-010027-r0tl01kq 574 13 EGFR EGFR NNP cord-010027-r0tl01kq 574 14 , , , cord-010027-r0tl01kq 574 15 KRAS KRAS NNP cord-010027-r0tl01kq 574 16 and and CC cord-010027-r0tl01kq 574 17 ALK ALK NNP cord-010027-r0tl01kq 574 18 to to TO cord-010027-r0tl01kq 574 19 be be VB cord-010027-r0tl01kq 574 20 10.4 10.4 CD cord-010027-r0tl01kq 574 21 % % NN cord-010027-r0tl01kq 574 22 ( ( -LRB- cord-010027-r0tl01kq 574 23 67/643 67/643 CD cord-010027-r0tl01kq 574 24 ) ) -RRB- cord-010027-r0tl01kq 574 25 , , , cord-010027-r0tl01kq 574 26 35.8 35.8 CD cord-010027-r0tl01kq 574 27 % % NN cord-010027-r0tl01kq 574 28 ( ( -LRB- cord-010027-r0tl01kq 574 29 86/240 86/240 CD cord-010027-r0tl01kq 574 30 ) ) -RRB- cord-010027-r0tl01kq 574 31 and and CC cord-010027-r0tl01kq 574 32 2.3 2.3 CD cord-010027-r0tl01kq 574 33 % % NN cord-010027-r0tl01kq 574 34 ( ( -LRB- cord-010027-r0tl01kq 574 35 7/304 7/304 CD cord-010027-r0tl01kq 574 36 ) ) -RRB- cord-010027-r0tl01kq 574 37 respectively respectively RB cord-010027-r0tl01kq 574 38 . . . cord-010027-r0tl01kq 575 1 In in IN cord-010027-r0tl01kq 575 2 our -PRON- PRP$ cord-010027-r0tl01kq 575 3 cohort cohort NN cord-010027-r0tl01kq 575 4 , , , cord-010027-r0tl01kq 575 5 an an DT cord-010027-r0tl01kq 575 6 increase increase NN cord-010027-r0tl01kq 575 7 in in IN cord-010027-r0tl01kq 575 8 one one CD cord-010027-r0tl01kq 575 9 pack pack NN cord-010027-r0tl01kq 575 10 years year NNS cord-010027-r0tl01kq 575 11 of of IN cord-010027-r0tl01kq 575 12 smoking smoking NN cord-010027-r0tl01kq 575 13 resulted result VBD cord-010027-r0tl01kq 575 14 in in IN cord-010027-r0tl01kq 575 15 a a DT cord-010027-r0tl01kq 575 16 decrease decrease NN cord-010027-r0tl01kq 575 17 in in IN cord-010027-r0tl01kq 575 18 the the DT cord-010027-r0tl01kq 575 19 odds odd NNS cord-010027-r0tl01kq 575 20 ratio ratio NN cord-010027-r0tl01kq 575 21 of of IN cord-010027-r0tl01kq 575 22 EGFR egfr NN cord-010027-r0tl01kq 575 23 - - HYPH cord-010027-r0tl01kq 575 24 positivity positivity NN cord-010027-r0tl01kq 575 25 ( ( -LRB- cord-010027-r0tl01kq 575 26 OR or CC cord-010027-r0tl01kq 575 27 0.94 0.94 CD cord-010027-r0tl01kq 575 28 , , , cord-010027-r0tl01kq 575 29 95 95 CD cord-010027-r0tl01kq 575 30 % % NN cord-010027-r0tl01kq 575 31 CI CI NNP cord-010027-r0tl01kq 575 32 0.92 0.92 CD cord-010027-r0tl01kq 575 33 -0.96 -0.96 CD cord-010027-r0tl01kq 575 34 , , , cord-010027-r0tl01kq 575 35 p<0.001 p<0.001 CD cord-010027-r0tl01kq 575 36 ) ) -RRB- cord-010027-r0tl01kq 575 37 . . . cord-010027-r0tl01kq 576 1 KRAS kra NNS cord-010027-r0tl01kq 576 2 - - HYPH cord-010027-r0tl01kq 576 3 positivity positivity NN cord-010027-r0tl01kq 576 4 was be VBD cord-010027-r0tl01kq 576 5 associated associate VBN cord-010027-r0tl01kq 576 6 with with IN cord-010027-r0tl01kq 576 7 a a DT cord-010027-r0tl01kq 576 8 history history NN cord-010027-r0tl01kq 576 9 of of IN cord-010027-r0tl01kq 576 10 smoking smoking NN cord-010027-r0tl01kq 576 11 , , , cord-010027-r0tl01kq 576 12 with with IN cord-010027-r0tl01kq 576 13 rates rate NNS cord-010027-r0tl01kq 576 14 in in IN cord-010027-r0tl01kq 576 15 both both DT cord-010027-r0tl01kq 576 16 former former JJ cord-010027-r0tl01kq 576 17 ( ( -LRB- cord-010027-r0tl01kq 576 18 OR or CC cord-010027-r0tl01kq 576 19 6.26 6.26 CD cord-010027-r0tl01kq 576 20 , , , cord-010027-r0tl01kq 576 21 95 95 CD cord-010027-r0tl01kq 576 22 % % NN cord-010027-r0tl01kq 576 23 CI CI NNP cord-010027-r0tl01kq 576 24 2.00 2.00 CD cord-010027-r0tl01kq 576 25 - - SYM cord-010027-r0tl01kq 576 26 19.56 19.56 CD cord-010027-r0tl01kq 576 27 , , , cord-010027-r0tl01kq 576 28 p=0.002 p=0.002 NNP cord-010027-r0tl01kq 576 29 ) ) -RRB- cord-010027-r0tl01kq 576 30 and and CC cord-010027-r0tl01kq 576 31 current current JJ cord-010027-r0tl01kq 576 32 smokers smoker NNS cord-010027-r0tl01kq 576 33 ( ( -LRB- cord-010027-r0tl01kq 576 34 OR or CC cord-010027-r0tl01kq 576 35 6.82 6.82 CD cord-010027-r0tl01kq 576 36 , , , cord-010027-r0tl01kq 576 37 95 95 CD cord-010027-r0tl01kq 576 38 % % NN cord-010027-r0tl01kq 576 39 CI CI NNP cord-010027-r0tl01kq 576 40 2.18 2.18 CD cord-010027-r0tl01kq 576 41 - - HYPH cord-010027-r0tl01kq 576 42 21.35 21.35 CD cord-010027-r0tl01kq 576 43 , , , cord-010027-r0tl01kq 576 44 p=0.001 p=0.001 NNP cord-010027-r0tl01kq 576 45 ) ) -RRB- cord-010027-r0tl01kq 576 46 significantly significantly RB cord-010027-r0tl01kq 576 47 higher high JJR cord-010027-r0tl01kq 576 48 than than IN cord-010027-r0tl01kq 576 49 in in IN cord-010027-r0tl01kq 576 50 non non JJ cord-010027-r0tl01kq 576 51 - - NNS cord-010027-r0tl01kq 576 52 smokers smoker NNS cord-010027-r0tl01kq 576 53 . . . cord-010027-r0tl01kq 577 1 The the DT cord-010027-r0tl01kq 577 2 number number NN cord-010027-r0tl01kq 577 3 of of IN cord-010027-r0tl01kq 577 4 smoking smoke VBG cord-010027-r0tl01kq 577 5 pack pack NN cord-010027-r0tl01kq 577 6 years year NNS cord-010027-r0tl01kq 577 7 had have VBD cord-010027-r0tl01kq 577 8 no no DT cord-010027-r0tl01kq 577 9 influence influence NN cord-010027-r0tl01kq 577 10 on on IN cord-010027-r0tl01kq 577 11 the the DT cord-010027-r0tl01kq 577 12 rates rate NNS cord-010027-r0tl01kq 577 13 of of IN cord-010027-r0tl01kq 577 14 KRAS kra NNS cord-010027-r0tl01kq 577 15 - - HYPH cord-010027-r0tl01kq 577 16 positivity positivity NN cord-010027-r0tl01kq 577 17 . . . cord-010027-r0tl01kq 578 1 ALK ALK NNP cord-010027-r0tl01kq 578 2 - - HYPH cord-010027-r0tl01kq 578 3 rearrangements rearrangement NNS cord-010027-r0tl01kq 578 4 were be VBD cord-010027-r0tl01kq 578 5 found find VBN cord-010027-r0tl01kq 578 6 to to TO cord-010027-r0tl01kq 578 7 be be VB cord-010027-r0tl01kq 578 8 associated associate VBN cord-010027-r0tl01kq 578 9 with with IN cord-010027-r0tl01kq 578 10 never never RB cord-010027-r0tl01kq 578 11 smokers smoker NNS cord-010027-r0tl01kq 578 12 ( ( -LRB- cord-010027-r0tl01kq 578 13 p<0.001 p<0.001 CD cord-010027-r0tl01kq 578 14 ) ) -RRB- cord-010027-r0tl01kq 578 15 and and CC cord-010027-r0tl01kq 578 16 younger young JJR cord-010027-r0tl01kq 578 17 patients patient NNS cord-010027-r0tl01kq 578 18 ( ( -LRB- cord-010027-r0tl01kq 578 19 ≤50 ≤50 NN cord-010027-r0tl01kq 578 20 years year NNS cord-010027-r0tl01kq 578 21 old old JJ cord-010027-r0tl01kq 578 22 ) ) -RRB- cord-010027-r0tl01kq 578 23 ( ( -LRB- cord-010027-r0tl01kq 578 24 p<0.001 p<0.001 CD cord-010027-r0tl01kq 578 25 ) ) -RRB- cord-010027-r0tl01kq 578 26 . . . cord-010027-r0tl01kq 579 1 To to IN cord-010027-r0tl01kq 579 2 date date NN cord-010027-r0tl01kq 579 3 , , , cord-010027-r0tl01kq 579 4 no no DT cord-010027-r0tl01kq 579 5 false false JJ cord-010027-r0tl01kq 579 6 positives positive NNS cord-010027-r0tl01kq 579 7 were be VBD cord-010027-r0tl01kq 579 8 reported report VBN cord-010027-r0tl01kq 579 9 for for IN cord-010027-r0tl01kq 579 10 parallel parallel JJ cord-010027-r0tl01kq 579 11 testing testing NN cord-010027-r0tl01kq 579 12 of of IN cord-010027-r0tl01kq 579 13 ALK ALK NNP cord-010027-r0tl01kq 579 14 with with IN cord-010027-r0tl01kq 579 15 IHC IHC NNP cord-010027-r0tl01kq 579 16 and and CC cord-010027-r0tl01kq 579 17 FISH fish NN cord-010027-r0tl01kq 579 18 . . . cord-010027-r0tl01kq 580 1 We -PRON- PRP cord-010027-r0tl01kq 580 2 observed observe VBD cord-010027-r0tl01kq 580 3 100 100 CD cord-010027-r0tl01kq 580 4 % % NN cord-010027-r0tl01kq 580 5 sensitivity sensitivity NN cord-010027-r0tl01kq 580 6 ( ( -LRB- cord-010027-r0tl01kq 580 7 7 7 CD cord-010027-r0tl01kq 580 8 IHC+/7 IHC+/7 NNP cord-010027-r0tl01kq 580 9 FISH+ FISH+ NNP cord-010027-r0tl01kq 580 10 ) ) -RRB- cord-010027-r0tl01kq 580 11 and and CC cord-010027-r0tl01kq 580 12 96.6 96.6 CD cord-010027-r0tl01kq 580 13 % % NN cord-010027-r0tl01kq 580 14 specificity specificity NN cord-010027-r0tl01kq 580 15 ( ( -LRB- cord-010027-r0tl01kq 580 16 113 113 CD cord-010027-r0tl01kq 580 17 IHC-/117 ihc-/117 CD cord-010027-r0tl01kq 580 18 FISH- FISH- NNS cord-010027-r0tl01kq 580 19 ) ) -RRB- cord-010027-r0tl01kq 580 20 when when WRB cord-010027-r0tl01kq 580 21 comparing compare VBG cord-010027-r0tl01kq 580 22 IHC IHC NNP cord-010027-r0tl01kq 580 23 with with IN cord-010027-r0tl01kq 580 24 FISH fish NN cord-010027-r0tl01kq 580 25 . . . cord-010027-r0tl01kq 581 1 In in IN cord-010027-r0tl01kq 581 2 conclusion conclusion NN cord-010027-r0tl01kq 581 3 , , , cord-010027-r0tl01kq 581 4 the the DT cord-010027-r0tl01kq 581 5 prevalence prevalence NN cord-010027-r0tl01kq 581 6 of of IN cord-010027-r0tl01kq 581 7 EGFR EGFR NNP cord-010027-r0tl01kq 581 8 mutation mutation NN cord-010027-r0tl01kq 581 9 in in IN cord-010027-r0tl01kq 581 10 South South NNP cord-010027-r0tl01kq 581 11 East East NNP cord-010027-r0tl01kq 581 12 of of IN cord-010027-r0tl01kq 581 13 Scotland Scotland NNP cord-010027-r0tl01kq 581 14 has have VBZ cord-010027-r0tl01kq 581 15 reflected reflect VBN cord-010027-r0tl01kq 581 16 mutation mutation NN cord-010027-r0tl01kq 581 17 rates rate NNS cord-010027-r0tl01kq 581 18 reported report VBN cord-010027-r0tl01kq 581 19 in in IN cord-010027-r0tl01kq 581 20 West West NNP cord-010027-r0tl01kq 581 21 of of IN cord-010027-r0tl01kq 581 22 Scotland Scotland NNP cord-010027-r0tl01kq 581 23 . . . cord-010027-r0tl01kq 582 1 Our -PRON- PRP$ cord-010027-r0tl01kq 582 2 findings finding NNS cord-010027-r0tl01kq 582 3 further far RBR cord-010027-r0tl01kq 582 4 support support VBP cord-010027-r0tl01kq 582 5 the the DT cord-010027-r0tl01kq 582 6 use use NN cord-010027-r0tl01kq 582 7 of of IN cord-010027-r0tl01kq 582 8 ALK ALK NNP cord-010027-r0tl01kq 582 9 - - HYPH cord-010027-r0tl01kq 582 10 IHC IHC NNP cord-010027-r0tl01kq 582 11 as as IN cord-010027-r0tl01kq 582 12 a a DT cord-010027-r0tl01kq 582 13 diagnostic diagnostic JJ cord-010027-r0tl01kq 582 14 screening screening NN cord-010027-r0tl01kq 582 15 tool tool NN cord-010027-r0tl01kq 582 16 . . . cord-010027-r0tl01kq 583 1 Purpose purpose NN cord-010027-r0tl01kq 583 2 of of IN cord-010027-r0tl01kq 583 3 the the DT cord-010027-r0tl01kq 583 4 Study Study NNP cord-010027-r0tl01kq 583 5 : : : cord-010027-r0tl01kq 583 6 The the DT cord-010027-r0tl01kq 583 7 molecular molecular JJ cord-010027-r0tl01kq 583 8 mechanisms mechanism NNS cord-010027-r0tl01kq 583 9 of of IN cord-010027-r0tl01kq 583 10 metastasis metastasis NN cord-010027-r0tl01kq 583 11 and and CC cord-010027-r0tl01kq 583 12 progression progression NN cord-010027-r0tl01kq 583 13 of of IN cord-010027-r0tl01kq 583 14 penile penile JJ cord-010027-r0tl01kq 583 15 squamous squamous JJ cord-010027-r0tl01kq 583 16 cell cell NN cord-010027-r0tl01kq 583 17 carcinoma carcinoma NN cord-010027-r0tl01kq 583 18 ( ( -LRB- cord-010027-r0tl01kq 583 19 PSCC PSCC NNP cord-010027-r0tl01kq 583 20 ) ) -RRB- cord-010027-r0tl01kq 583 21 are be VBP cord-010027-r0tl01kq 583 22 unclear unclear JJ cord-010027-r0tl01kq 583 23 . . . cord-010027-r0tl01kq 584 1 Nobody nobody NN cord-010027-r0tl01kq 584 2 , , , cord-010027-r0tl01kq 584 3 to to IN cord-010027-r0tl01kq 584 4 our -PRON- PRP$ cord-010027-r0tl01kq 584 5 knowledge knowledge NN cord-010027-r0tl01kq 584 6 , , , cord-010027-r0tl01kq 584 7 has have VBZ cord-010027-r0tl01kq 584 8 investigated investigate VBN cord-010027-r0tl01kq 584 9 the the DT cord-010027-r0tl01kq 584 10 expression expression NN cord-010027-r0tl01kq 584 11 of of IN cord-010027-r0tl01kq 584 12 cell cell NN cord-010027-r0tl01kq 584 13 - - HYPH cord-010027-r0tl01kq 584 14 cycle cycle NN cord-010027-r0tl01kq 584 15 proteins protein NNS cord-010027-r0tl01kq 584 16 in in IN cord-010027-r0tl01kq 584 17 advanced advanced JJ cord-010027-r0tl01kq 584 18 or or CC cord-010027-r0tl01kq 584 19 metastatic metastatic JJ cord-010027-r0tl01kq 584 20 PSCC PSCC NNP cord-010027-r0tl01kq 584 21 . . . cord-010027-r0tl01kq 585 1 We -PRON- PRP cord-010027-r0tl01kq 585 2 aimed aim VBD cord-010027-r0tl01kq 585 3 to to TO cord-010027-r0tl01kq 585 4 determine determine VB cord-010027-r0tl01kq 585 5 the the DT cord-010027-r0tl01kq 585 6 extent extent NN cord-010027-r0tl01kq 585 7 of of IN cord-010027-r0tl01kq 585 8 HPV hpv NN cord-010027-r0tl01kq 585 9 infection infection NN cord-010027-r0tl01kq 585 10 in in IN cord-010027-r0tl01kq 585 11 patients patient NNS cord-010027-r0tl01kq 585 12 with with IN cord-010027-r0tl01kq 585 13 advanced advanced JJ cord-010027-r0tl01kq 585 14 PSCC PSCC NNP cord-010027-r0tl01kq 585 15 and and CC cord-010027-r0tl01kq 585 16 its -PRON- PRP$ cord-010027-r0tl01kq 585 17 effect effect NN cord-010027-r0tl01kq 585 18 on on IN cord-010027-r0tl01kq 585 19 the the DT cord-010027-r0tl01kq 585 20 expression expression NN cord-010027-r0tl01kq 585 21 of of IN cord-010027-r0tl01kq 585 22 the the DT cord-010027-r0tl01kq 585 23 key key JJ cord-010027-r0tl01kq 585 24 cell cell NN cord-010027-r0tl01kq 585 25 - - HYPH cord-010027-r0tl01kq 585 26 cycle cycle NN cord-010027-r0tl01kq 585 27 proteins protein NNS cord-010027-r0tl01kq 585 28 p53 p53 NN cord-010027-r0tl01kq 585 29 , , , cord-010027-r0tl01kq 585 30 p16INK4A p16ink4a NN cord-010027-r0tl01kq 585 31 and and CC cord-010027-r0tl01kq 585 32 retinoblastoma retinoblastoma NN cord-010027-r0tl01kq 585 33 ( ( -LRB- cord-010027-r0tl01kq 585 34 RB RB NNP cord-010027-r0tl01kq 585 35 ) ) -RRB- cord-010027-r0tl01kq 585 36 . . . cord-010027-r0tl01kq 586 1 Methods method NNS cord-010027-r0tl01kq 586 2 : : : cord-010027-r0tl01kq 587 1 Archival archival JJ cord-010027-r0tl01kq 587 2 paraffin paraffin NN cord-010027-r0tl01kq 587 3 embedded embed VBN cord-010027-r0tl01kq 587 4 blocks block NNS cord-010027-r0tl01kq 587 5 were be VBD cord-010027-r0tl01kq 587 6 obtained obtain VBN cord-010027-r0tl01kq 587 7 from from IN cord-010027-r0tl01kq 587 8 27 27 CD cord-010027-r0tl01kq 587 9 primary primary JJ cord-010027-r0tl01kq 587 10 penile penile JJ cord-010027-r0tl01kq 587 11 cancers cancer NNS cord-010027-r0tl01kq 587 12 , , , cord-010027-r0tl01kq 587 13 all all DT cord-010027-r0tl01kq 587 14 patients patient NNS cord-010027-r0tl01kq 587 15 having have VBG cord-010027-r0tl01kq 587 16 developed develop VBN cord-010027-r0tl01kq 587 17 locally locally RB cord-010027-r0tl01kq 587 18 - - HYPH cord-010027-r0tl01kq 587 19 advanced advance VBN cord-010027-r0tl01kq 587 20 or or CC cord-010027-r0tl01kq 587 21 metastatic metastatic JJ cord-010027-r0tl01kq 587 22 disease disease NN cord-010027-r0tl01kq 587 23 . . . cord-010027-r0tl01kq 588 1 All all DT cord-010027-r0tl01kq 588 2 patients patient NNS cord-010027-r0tl01kq 588 3 were be VBD cord-010027-r0tl01kq 588 4 treated treat VBN cord-010027-r0tl01kq 588 5 in in IN cord-010027-r0tl01kq 588 6 the the DT cord-010027-r0tl01kq 588 7 Phase Phase NNP cord-010027-r0tl01kq 588 8 II II NNP cord-010027-r0tl01kq 588 9 Trial Trial NNP cord-010027-r0tl01kq 588 10 of of IN cord-010027-r0tl01kq 588 11 docetaxel docetaxel NNP cord-010027-r0tl01kq 588 12 , , , cord-010027-r0tl01kq 588 13 cisplatin cisplatin NN cord-010027-r0tl01kq 588 14 & & CC cord-010027-r0tl01kq 588 15 5-fluorouracil 5-fluorouracil CD cord-010027-r0tl01kq 588 16 ( ( -LRB- cord-010027-r0tl01kq 588 17 TPF TPF NNP cord-010027-r0tl01kq 588 18 ) ) -RRB- cord-010027-r0tl01kq 589 1 chemotherapy chemotherapy NN cord-010027-r0tl01kq 589 2 CRUK/09/001 CRUK/09/001 NNP cord-010027-r0tl01kq 590 1 ( ( -LRB- cord-010027-r0tl01kq 590 2 Nicholson Nicholson NNP cord-010027-r0tl01kq 590 3 et et NNP cord-010027-r0tl01kq 590 4 al al NNP cord-010027-r0tl01kq 590 5 . . . cord-010027-r0tl01kq 591 1 BJC BJC NNP cord-010027-r0tl01kq 591 2 2013 2013 CD cord-010027-r0tl01kq 591 3 ; ; : cord-010027-r0tl01kq 591 4 109 109 CD cord-010027-r0tl01kq 591 5 : : SYM cord-010027-r0tl01kq 591 6 2554 2554 CD cord-010027-r0tl01kq 591 7 - - SYM cord-010027-r0tl01kq 591 8 9 9 CD cord-010027-r0tl01kq 591 9 ) ) -RRB- cord-010027-r0tl01kq 591 10 . . . cord-010027-r0tl01kq 592 1 Samples sample NNS cord-010027-r0tl01kq 592 2 were be VBD cord-010027-r0tl01kq 592 3 analysed analyse VBN cord-010027-r0tl01kq 592 4 immunohistochemically immunohistochemically RB cord-010027-r0tl01kq 592 5 for for IN cord-010027-r0tl01kq 592 6 p16INK4A p16INK4A NNP cord-010027-r0tl01kq 592 7 , , , cord-010027-r0tl01kq 592 8 p53 p53 NN cord-010027-r0tl01kq 592 9 and and CC cord-010027-r0tl01kq 592 10 RB rb NN cord-010027-r0tl01kq 592 11 protein protein NN cord-010027-r0tl01kq 592 12 expression expression NN cord-010027-r0tl01kq 592 13 on on IN cord-010027-r0tl01kq 592 14 a a DT cord-010027-r0tl01kq 592 15 tissue tissue NN cord-010027-r0tl01kq 592 16 microarray microarray NN cord-010027-r0tl01kq 592 17 . . . cord-010027-r0tl01kq 593 1 All all DT cord-010027-r0tl01kq 593 2 tumours tumour NNS cord-010027-r0tl01kq 593 3 were be VBD cord-010027-r0tl01kq 593 4 HPV HPV NNP cord-010027-r0tl01kq 593 5 typed type VBN cord-010027-r0tl01kq 593 6 using use VBG cord-010027-r0tl01kq 593 7 PCR PCR NNP cord-010027-r0tl01kq 593 8 . . . cord-010027-r0tl01kq 594 1 Summary summary NN cord-010027-r0tl01kq 594 2 of of IN cord-010027-r0tl01kq 594 3 Results result NNS cord-010027-r0tl01kq 594 4 : : : cord-010027-r0tl01kq 595 1 HPV HPV NNP cord-010027-r0tl01kq 595 2 DNA DNA NNP cord-010027-r0tl01kq 595 3 was be VBD cord-010027-r0tl01kq 595 4 detected detect VBN cord-010027-r0tl01kq 595 5 in in IN cord-010027-r0tl01kq 595 6 8/22 8/22 CD cord-010027-r0tl01kq 595 7 ( ( -LRB- cord-010027-r0tl01kq 595 8 36 36 CD cord-010027-r0tl01kq 595 9 % % NN cord-010027-r0tl01kq 595 10 ) ) -RRB- cord-010027-r0tl01kq 595 11 with with IN cord-010027-r0tl01kq 595 12 HPV HPV NNP cord-010027-r0tl01kq 595 13 16 16 CD cord-010027-r0tl01kq 595 14 present present NN cord-010027-r0tl01kq 595 15 in in IN cord-010027-r0tl01kq 595 16 7/8 7/8 CD cord-010027-r0tl01kq 595 17 ( ( -LRB- cord-010027-r0tl01kq 595 18 88 88 CD cord-010027-r0tl01kq 595 19 % % NN cord-010027-r0tl01kq 595 20 ) ) -RRB- cord-010027-r0tl01kq 595 21 . . . cord-010027-r0tl01kq 596 1 5 5 CD cord-010027-r0tl01kq 596 2 cases case NNS cord-010027-r0tl01kq 596 3 were be VBD cord-010027-r0tl01kq 596 4 not not RB cord-010027-r0tl01kq 596 5 suitable suitable JJ cord-010027-r0tl01kq 596 6 for for IN cord-010027-r0tl01kq 596 7 analysis analysis NN cord-010027-r0tl01kq 596 8 . . . cord-010027-r0tl01kq 597 1 No no DT cord-010027-r0tl01kq 597 2 association association NN cord-010027-r0tl01kq 597 3 was be VBD cord-010027-r0tl01kq 597 4 found find VBN cord-010027-r0tl01kq 597 5 between between IN cord-010027-r0tl01kq 597 6 HPV hpv NN cord-010027-r0tl01kq 597 7 and and CC cord-010027-r0tl01kq 597 8 expression expression NN cord-010027-r0tl01kq 597 9 of of IN cord-010027-r0tl01kq 597 10 either either DT cord-010027-r0tl01kq 597 11 p16INK4A p16INK4A NNP cord-010027-r0tl01kq 597 12 ( ( -LRB- cord-010027-r0tl01kq 597 13 p= p= NNP cord-010027-r0tl01kq 597 14 0.3426 0.3426 CD cord-010027-r0tl01kq 597 15 ) ) -RRB- cord-010027-r0tl01kq 597 16 , , , cord-010027-r0tl01kq 597 17 p53 p53 NN cord-010027-r0tl01kq 597 18 ( ( -LRB- cord-010027-r0tl01kq 597 19 p= p= NNP cord-010027-r0tl01kq 597 20 0.1365 0.1365 CD cord-010027-r0tl01kq 597 21 ) ) -RRB- cord-010027-r0tl01kq 597 22 or or CC cord-010027-r0tl01kq 597 23 RB RB NNP cord-010027-r0tl01kq 597 24 ( ( -LRB- cord-010027-r0tl01kq 597 25 p= p= NNP cord-010027-r0tl01kq 597 26 1 1 CD cord-010027-r0tl01kq 597 27 ) ) -RRB- cord-010027-r0tl01kq 597 28 using use VBG cord-010027-r0tl01kq 597 29 Fisher Fisher NNP cord-010027-r0tl01kq 597 30 's 's POS cord-010027-r0tl01kq 597 31 exact exact JJ cord-010027-r0tl01kq 597 32 test test NN cord-010027-r0tl01kq 597 33 . . . cord-010027-r0tl01kq 598 1 Conclusions conclusion NNS cord-010027-r0tl01kq 598 2 : : : cord-010027-r0tl01kq 599 1 HPV HPV NNP cord-010027-r0tl01kq 599 2 DNA DNA NNP cord-010027-r0tl01kq 599 3 is be VBZ cord-010027-r0tl01kq 599 4 detected detect VBN cord-010027-r0tl01kq 599 5 in in IN cord-010027-r0tl01kq 599 6 less less JJR cord-010027-r0tl01kq 599 7 than than IN cord-010027-r0tl01kq 599 8 half half NN cord-010027-r0tl01kq 599 9 of of IN cord-010027-r0tl01kq 599 10 progressive progressive JJ cord-010027-r0tl01kq 599 11 PSCC PSCC NNP cord-010027-r0tl01kq 599 12 , , , cord-010027-r0tl01kq 599 13 suggesting suggest VBG cord-010027-r0tl01kq 599 14 either either CC cord-010027-r0tl01kq 599 15 the the DT cord-010027-r0tl01kq 599 16 loss loss NN cord-010027-r0tl01kq 599 17 of of IN cord-010027-r0tl01kq 599 18 HPV hpv NN cord-010027-r0tl01kq 599 19 in in IN cord-010027-r0tl01kq 599 20 advanced advanced JJ cord-010027-r0tl01kq 599 21 disease disease NN cord-010027-r0tl01kq 599 22 or or CC cord-010027-r0tl01kq 599 23 that that IN cord-010027-r0tl01kq 599 24 non non JJ cord-010027-r0tl01kq 599 25 - - JJ cord-010027-r0tl01kq 599 26 HPV hpv JJ cord-010027-r0tl01kq 599 27 related related JJ cord-010027-r0tl01kq 599 28 cancers cancer NNS cord-010027-r0tl01kq 599 29 progress progress VBP cord-010027-r0tl01kq 599 30 more more RBR cord-010027-r0tl01kq 599 31 commonly commonly RB cord-010027-r0tl01kq 599 32 . . . cord-010027-r0tl01kq 600 1 The the DT cord-010027-r0tl01kq 600 2 lack lack NN cord-010027-r0tl01kq 600 3 of of IN cord-010027-r0tl01kq 600 4 correlation correlation NN cord-010027-r0tl01kq 600 5 between between IN cord-010027-r0tl01kq 600 6 HPV HPV NNP cord-010027-r0tl01kq 600 7 and and CC cord-010027-r0tl01kq 600 8 these these DT cord-010027-r0tl01kq 600 9 cell cell NN cord-010027-r0tl01kq 600 10 - - HYPH cord-010027-r0tl01kq 600 11 cycle cycle NN cord-010027-r0tl01kq 600 12 proteins protein NNS cord-010027-r0tl01kq 600 13 suggests suggest VBZ cord-010027-r0tl01kq 600 14 that that IN cord-010027-r0tl01kq 600 15 they -PRON- PRP cord-010027-r0tl01kq 600 16 may may MD cord-010027-r0tl01kq 600 17 undergo undergo VB cord-010027-r0tl01kq 600 18 somatic somatic JJ cord-010027-r0tl01kq 600 19 mutation mutation NN cord-010027-r0tl01kq 600 20 that that WDT cord-010027-r0tl01kq 600 21 is be VBZ cord-010027-r0tl01kq 600 22 not not RB cord-010027-r0tl01kq 600 23 driven drive VBN cord-010027-r0tl01kq 600 24 by by IN cord-010027-r0tl01kq 600 25 HPV HPV NNP cord-010027-r0tl01kq 600 26 , , , cord-010027-r0tl01kq 600 27 leading lead VBG cord-010027-r0tl01kq 600 28 to to IN cord-010027-r0tl01kq 600 29 increased increase VBN cord-010027-r0tl01kq 600 30 growth growth NN cord-010027-r0tl01kq 600 31 and and CC cord-010027-r0tl01kq 600 32 invasiveness invasiveness NN cord-010027-r0tl01kq 600 33 . . . cord-010027-r0tl01kq 601 1 Treatment treatment NN cord-010027-r0tl01kq 601 2 strategies strategy NNS cord-010027-r0tl01kq 601 3 may may MD cord-010027-r0tl01kq 601 4 be be VB cord-010027-r0tl01kq 601 5 hampered hamper VBN cord-010027-r0tl01kq 601 6 by by IN cord-010027-r0tl01kq 601 7 this this DT cord-010027-r0tl01kq 601 8 genetic genetic JJ cord-010027-r0tl01kq 601 9 diversity diversity NN cord-010027-r0tl01kq 601 10 , , , cord-010027-r0tl01kq 601 11 which which WDT cord-010027-r0tl01kq 601 12 requires require VBZ cord-010027-r0tl01kq 601 13 further further JJ cord-010027-r0tl01kq 601 14 investigation investigation NN cord-010027-r0tl01kq 601 15 . . . cord-010027-r0tl01kq 602 1 Prostate prostate NN cord-010027-r0tl01kq 602 2 cancer cancer NN cord-010027-r0tl01kq 602 3 is be VBZ cord-010027-r0tl01kq 602 4 the the DT cord-010027-r0tl01kq 602 5 second second JJ cord-010027-r0tl01kq 602 6 most most RBS cord-010027-r0tl01kq 602 7 common common JJ cord-010027-r0tl01kq 602 8 form form NN cord-010027-r0tl01kq 602 9 of of IN cord-010027-r0tl01kq 602 10 cancer cancer NN cord-010027-r0tl01kq 602 11 in in IN cord-010027-r0tl01kq 602 12 males male NNS cord-010027-r0tl01kq 602 13 , , , cord-010027-r0tl01kq 602 14 and and CC cord-010027-r0tl01kq 602 15 the the DT cord-010027-r0tl01kq 602 16 incidence incidence NN cord-010027-r0tl01kq 602 17 of of IN cord-010027-r0tl01kq 602 18 this this DT cord-010027-r0tl01kq 602 19 disease disease NN cord-010027-r0tl01kq 602 20 is be VBZ cord-010027-r0tl01kq 602 21 predicted predict VBN cord-010027-r0tl01kq 602 22 to to TO cord-010027-r0tl01kq 602 23 double double VB cord-010027-r0tl01kq 602 24 globally globally RB cord-010027-r0tl01kq 602 25 by by IN cord-010027-r0tl01kq 602 26 2030 2030 CD cord-010027-r0tl01kq 602 27 . . . cord-010027-r0tl01kq 603 1 More More JJR cord-010027-r0tl01kq 603 2 than than IN cord-010027-r0tl01kq 603 3 1.1 1.1 CD cord-010027-r0tl01kq 603 4 million million CD cord-010027-r0tl01kq 603 5 new new JJ cord-010027-r0tl01kq 603 6 cases case NNS cord-010027-r0tl01kq 603 7 of of IN cord-010027-r0tl01kq 603 8 prostate prostate NN cord-010027-r0tl01kq 603 9 cancer cancer NN cord-010027-r0tl01kq 603 10 are be VBP cord-010027-r0tl01kq 603 11 diagnosed diagnose VBN cord-010027-r0tl01kq 603 12 each each DT cord-010027-r0tl01kq 603 13 year year NN cord-010027-r0tl01kq 603 14 and and CC cord-010027-r0tl01kq 604 1 two two CD cord-010027-r0tl01kq 604 2 thirds third NNS cord-010027-r0tl01kq 604 3 of of IN cord-010027-r0tl01kq 604 4 these these DT cord-010027-r0tl01kq 604 5 patients patient NNS cord-010027-r0tl01kq 604 6 are be VBP cord-010027-r0tl01kq 604 7 from from IN cord-010027-r0tl01kq 604 8 the the DT cord-010027-r0tl01kq 604 9 Western western JJ cord-010027-r0tl01kq 604 10 world world NN cord-010027-r0tl01kq 604 11 . . . cord-010027-r0tl01kq 605 1 Current current JJ cord-010027-r0tl01kq 605 2 diagnostic diagnostic JJ cord-010027-r0tl01kq 605 3 tests test NNS cord-010027-r0tl01kq 605 4 for for IN cord-010027-r0tl01kq 605 5 prostate prostate NN cord-010027-r0tl01kq 605 6 cancer cancer NN cord-010027-r0tl01kq 605 7 are be VBP cord-010027-r0tl01kq 605 8 limited limit VBN cord-010027-r0tl01kq 605 9 in in IN cord-010027-r0tl01kq 605 10 both both DT cord-010027-r0tl01kq 605 11 sensitivity sensitivity NN cord-010027-r0tl01kq 605 12 and and CC cord-010027-r0tl01kq 605 13 accuracy accuracy NN cord-010027-r0tl01kq 605 14 , , , cord-010027-r0tl01kq 605 15 and and CC cord-010027-r0tl01kq 605 16 a a DT cord-010027-r0tl01kq 605 17 method method NN cord-010027-r0tl01kq 605 18 for for IN cord-010027-r0tl01kq 605 19 accurate accurate JJ cord-010027-r0tl01kq 605 20 prognosis prognosis NN cord-010027-r0tl01kq 605 21 in in IN cord-010027-r0tl01kq 605 22 these these DT cord-010027-r0tl01kq 605 23 patients patient NNS cord-010027-r0tl01kq 605 24 is be VBZ cord-010027-r0tl01kq 605 25 yet yet RB cord-010027-r0tl01kq 605 26 to to TO cord-010027-r0tl01kq 605 27 be be VB cord-010027-r0tl01kq 605 28 developed develop VBN cord-010027-r0tl01kq 605 29 ; ; : cord-010027-r0tl01kq 605 30 therefore therefore RB cord-010027-r0tl01kq 605 31 , , , cord-010027-r0tl01kq 605 32 there there EX cord-010027-r0tl01kq 605 33 is be VBZ cord-010027-r0tl01kq 605 34 a a DT cord-010027-r0tl01kq 605 35 need need NN cord-010027-r0tl01kq 605 36 for for IN cord-010027-r0tl01kq 605 37 a a DT cord-010027-r0tl01kq 605 38 sensitive sensitive JJ cord-010027-r0tl01kq 605 39 and and CC cord-010027-r0tl01kq 605 40 specific specific JJ cord-010027-r0tl01kq 605 41 prostate prostate NN cord-010027-r0tl01kq 605 42 cancer cancer NN cord-010027-r0tl01kq 605 43 test test NN cord-010027-r0tl01kq 605 44 to to TO cord-010027-r0tl01kq 605 45 implement implement VB cord-010027-r0tl01kq 605 46 early early JJ cord-010027-r0tl01kq 605 47 and and CC cord-010027-r0tl01kq 605 48 appropriate appropriate JJ cord-010027-r0tl01kq 605 49 therapy therapy NN cord-010027-r0tl01kq 605 50 . . . cord-010027-r0tl01kq 606 1 The the DT cord-010027-r0tl01kq 606 2 recent recent JJ cord-010027-r0tl01kq 606 3 discovery discovery NN cord-010027-r0tl01kq 606 4 of of IN cord-010027-r0tl01kq 606 5 altered alter VBN cord-010027-r0tl01kq 606 6 endosomal endosomal NNP cord-010027-r0tl01kq 606 7 - - HYPH cord-010027-r0tl01kq 606 8 lysosomal lysosomal VBG cord-010027-r0tl01kq 606 9 biogenesis biogenesis NN cord-010027-r0tl01kq 606 10 in in IN cord-010027-r0tl01kq 606 11 prostate prostate NN cord-010027-r0tl01kq 606 12 cancer cancer NN cord-010027-r0tl01kq 606 13 cells cell NNS cord-010027-r0tl01kq 606 14 has have VBZ cord-010027-r0tl01kq 606 15 identified identify VBN cord-010027-r0tl01kq 606 16 a a DT cord-010027-r0tl01kq 606 17 fundamental fundamental JJ cord-010027-r0tl01kq 606 18 change change NN cord-010027-r0tl01kq 606 19 in in IN cord-010027-r0tl01kq 606 20 the the DT cord-010027-r0tl01kq 606 21 cell cell NN cord-010027-r0tl01kq 606 22 biology biology NN cord-010027-r0tl01kq 606 23 of of IN cord-010027-r0tl01kq 606 24 this this DT cord-010027-r0tl01kq 606 25 cancer cancer NN cord-010027-r0tl01kq 606 26 that that WDT cord-010027-r0tl01kq 606 27 holds hold VBZ cord-010027-r0tl01kq 606 28 great great JJ cord-010027-r0tl01kq 606 29 promise promise NN cord-010027-r0tl01kq 606 30 for for IN cord-010027-r0tl01kq 606 31 the the DT cord-010027-r0tl01kq 606 32 identification identification NN cord-010027-r0tl01kq 606 33 of of IN cord-010027-r0tl01kq 606 34 novel novel JJ cord-010027-r0tl01kq 606 35 biomarkers biomarker NNS cord-010027-r0tl01kq 606 36 that that WDT cord-010027-r0tl01kq 606 37 can can MD cord-010027-r0tl01kq 606 38 predict predict VB cord-010027-r0tl01kq 606 39 disease disease NN cord-010027-r0tl01kq 606 40 outcomes outcome NNS cord-010027-r0tl01kq 606 41 . . . cord-010027-r0tl01kq 607 1 Investigation investigation NN cord-010027-r0tl01kq 607 2 of of IN cord-010027-r0tl01kq 607 3 the the DT cord-010027-r0tl01kq 607 4 endosome endosome NNP cord-010027-r0tl01kq 607 5 compartment compartment NN cord-010027-r0tl01kq 607 6 and and CC cord-010027-r0tl01kq 607 7 endosome endosome NN cord-010027-r0tl01kq 607 8 biogenesis biogenesis NN cord-010027-r0tl01kq 607 9 revealed reveal VBD cord-010027-r0tl01kq 607 10 elevated elevated JJ cord-010027-r0tl01kq 607 11 gene gene NN cord-010027-r0tl01kq 607 12 and and CC cord-010027-r0tl01kq 607 13 expression expression NN cord-010027-r0tl01kq 607 14 of of IN cord-010027-r0tl01kq 607 15 critical critical JJ cord-010027-r0tl01kq 607 16 machinery machinery NN cord-010027-r0tl01kq 607 17 components component NNS cord-010027-r0tl01kq 607 18 that that WDT cord-010027-r0tl01kq 607 19 are be VBP cord-010027-r0tl01kq 607 20 required require VBN cord-010027-r0tl01kq 607 21 for for IN cord-010027-r0tl01kq 607 22 endosome endosome NN cord-010027-r0tl01kq 607 23 biogenesis biogenesis NN cord-010027-r0tl01kq 607 24 and and CC cord-010027-r0tl01kq 607 25 endocytosis endocytosis NN cord-010027-r0tl01kq 607 26 . . . cord-010027-r0tl01kq 608 1 Here here RB cord-010027-r0tl01kq 608 2 we -PRON- PRP cord-010027-r0tl01kq 608 3 demonstrate demonstrate VBP cord-010027-r0tl01kq 608 4 significantly significantly RB cord-010027-r0tl01kq 608 5 altered alter VBN cord-010027-r0tl01kq 608 6 expression expression NN cord-010027-r0tl01kq 608 7 of of IN cord-010027-r0tl01kq 608 8 endosomal endosomal NNP cord-010027-r0tl01kq 608 9 and and CC cord-010027-r0tl01kq 608 10 lysosomal lysosomal JJ cord-010027-r0tl01kq 608 11 genes gene NNS cord-010027-r0tl01kq 608 12 in in IN cord-010027-r0tl01kq 608 13 mRNA mRNA NNP cord-010027-r0tl01kq 608 14 microarrays microarray NNS cord-010027-r0tl01kq 608 15 of of IN cord-010027-r0tl01kq 608 16 prostate prostate NN cord-010027-r0tl01kq 608 17 cancer cancer NN cord-010027-r0tl01kq 608 18 tissue tissue NN cord-010027-r0tl01kq 608 19 compared compare VBN cord-010027-r0tl01kq 608 20 to to IN cord-010027-r0tl01kq 608 21 non non JJ cord-010027-r0tl01kq 608 22 - - JJ cord-010027-r0tl01kq 608 23 malignant malignant JJ cord-010027-r0tl01kq 608 24 tissue tissue NN cord-010027-r0tl01kq 608 25 , , , cord-010027-r0tl01kq 608 26 and and CC cord-010027-r0tl01kq 608 27 that that DT cord-010027-r0tl01kq 608 28 specific specific JJ cord-010027-r0tl01kq 608 29 endosomal endosomal NNP cord-010027-r0tl01kq 608 30 and and CC cord-010027-r0tl01kq 608 31 lysosomal lysosomal JJ cord-010027-r0tl01kq 608 32 genes gene NNS cord-010027-r0tl01kq 608 33 are be VBP cord-010027-r0tl01kq 608 34 predictive predictive JJ cord-010027-r0tl01kq 608 35 of of IN cord-010027-r0tl01kq 608 36 patient patient JJ cord-010027-r0tl01kq 608 37 outcomes outcome NNS cord-010027-r0tl01kq 608 38 . . . cord-010027-r0tl01kq 609 1 Two two CD cord-010027-r0tl01kq 609 2 endosomal endosomal JJ cord-010027-r0tl01kq 609 3 tri tri JJ cord-010027-r0tl01kq 609 4 - - JJ cord-010027-r0tl01kq 609 5 gene gene NN cord-010027-r0tl01kq 609 6 signatures signature NNS cord-010027-r0tl01kq 609 7 were be VBD cord-010027-r0tl01kq 609 8 identified identify VBN cord-010027-r0tl01kq 609 9 that that WDT cord-010027-r0tl01kq 609 10 had have VBD cord-010027-r0tl01kq 609 11 a a DT cord-010027-r0tl01kq 609 12 significant significant JJ cord-010027-r0tl01kq 609 13 capacity capacity NN cord-010027-r0tl01kq 609 14 to to TO cord-010027-r0tl01kq 609 15 stratify stratify VB cord-010027-r0tl01kq 609 16 patient patient JJ cord-010027-r0tl01kq 609 17 outcomes outcome NNS cord-010027-r0tl01kq 609 18 . . . cord-010027-r0tl01kq 610 1 Changes change NNS cord-010027-r0tl01kq 610 2 in in IN cord-010027-r0tl01kq 610 3 the the DT cord-010027-r0tl01kq 610 4 expression expression NN cord-010027-r0tl01kq 610 5 of of IN cord-010027-r0tl01kq 610 6 these these DT cord-010027-r0tl01kq 610 7 genes gene NNS cord-010027-r0tl01kq 610 8 was be VBD cord-010027-r0tl01kq 610 9 further further RB cord-010027-r0tl01kq 610 10 ascertained ascertain VBN cord-010027-r0tl01kq 610 11 by by IN cord-010027-r0tl01kq 610 12 qPCR qPCR NNP cord-010027-r0tl01kq 610 13 in in IN cord-010027-r0tl01kq 610 14 fresh fresh JJ cord-010027-r0tl01kq 610 15 - - HYPH cord-010027-r0tl01kq 610 16 frozen frozen JJ cord-010027-r0tl01kq 610 17 prostate prostate NN cord-010027-r0tl01kq 610 18 tissue tissue NN cord-010027-r0tl01kq 610 19 specimens specimen NNS cord-010027-r0tl01kq 610 20 , , , cord-010027-r0tl01kq 610 21 which which WDT cord-010027-r0tl01kq 610 22 further further RB cord-010027-r0tl01kq 610 23 implicated implicate VBD cord-010027-r0tl01kq 610 24 altered altered JJ cord-010027-r0tl01kq 610 25 endosome endosome NN cord-010027-r0tl01kq 610 26 biology biology NN cord-010027-r0tl01kq 610 27 during during IN cord-010027-r0tl01kq 610 28 disease disease NN cord-010027-r0tl01kq 610 29 progression progression NN cord-010027-r0tl01kq 610 30 , , , cord-010027-r0tl01kq 610 31 with with IN cord-010027-r0tl01kq 610 32 significant significant JJ cord-010027-r0tl01kq 610 33 changes change NNS cord-010027-r0tl01kq 610 34 in in IN cord-010027-r0tl01kq 610 35 expression expression NN cord-010027-r0tl01kq 610 36 observed observe VBN cord-010027-r0tl01kq 610 37 between between IN cord-010027-r0tl01kq 610 38 aggressive aggressive JJ cord-010027-r0tl01kq 610 39 prostate prostate NN cord-010027-r0tl01kq 610 40 cancer cancer NN cord-010027-r0tl01kq 610 41 and and CC cord-010027-r0tl01kq 610 42 indolent indolent JJ cord-010027-r0tl01kq 610 43 disease disease NN cord-010027-r0tl01kq 610 44 or or CC cord-010027-r0tl01kq 610 45 normal normal JJ cord-010027-r0tl01kq 610 46 prostate prostate NN cord-010027-r0tl01kq 610 47 tissue tissue NN cord-010027-r0tl01kq 610 48 . . . cord-010027-r0tl01kq 611 1 These these DT cord-010027-r0tl01kq 611 2 findings finding NNS cord-010027-r0tl01kq 611 3 support support VBP cord-010027-r0tl01kq 611 4 the the DT cord-010027-r0tl01kq 611 5 initiation initiation NN cord-010027-r0tl01kq 611 6 of of IN cord-010027-r0tl01kq 611 7 a a DT cord-010027-r0tl01kq 611 8 retrospective retrospective JJ cord-010027-r0tl01kq 611 9 trial trial NN cord-010027-r0tl01kq 611 10 to to TO cord-010027-r0tl01kq 611 11 determine determine VB cord-010027-r0tl01kq 611 12 if if IN cord-010027-r0tl01kq 611 13 these these DT cord-010027-r0tl01kq 611 14 new new JJ cord-010027-r0tl01kq 611 15 biomarkers biomarker NNS cord-010027-r0tl01kq 611 16 can can MD cord-010027-r0tl01kq 611 17 accurately accurately RB cord-010027-r0tl01kq 611 18 predict predict VB cord-010027-r0tl01kq 611 19 clinical clinical JJ cord-010027-r0tl01kq 611 20 progression progression NN cord-010027-r0tl01kq 611 21 in in IN cord-010027-r0tl01kq 611 22 prostate prostate NN cord-010027-r0tl01kq 611 23 cancer cancer NN cord-010027-r0tl01kq 611 24 patients patient NNS cord-010027-r0tl01kq 611 25 . . . cord-010027-r0tl01kq 612 1 M M NNP cord-010027-r0tl01kq 612 2 Craze craze NN cord-010027-r0tl01kq 612 3 ; ; : cord-010027-r0tl01kq 612 4 C C NNP cord-010027-r0tl01kq 612 5 Joseph Joseph NNP cord-010027-r0tl01kq 612 6 ; ; : cord-010027-r0tl01kq 612 7 C C NNP cord-010027-r0tl01kq 612 8 Nolan Nolan NNP cord-010027-r0tl01kq 612 9 ; ; : cord-010027-r0tl01kq 612 10 A a DT cord-010027-r0tl01kq 612 11 Green Green NNP cord-010027-r0tl01kq 612 12 ; ; : cord-010027-r0tl01kq 612 13 EA EA NNP cord-010027-r0tl01kq 612 14 Rakha Rakha NNP cord-010027-r0tl01kq 612 15 ; ; : cord-010027-r0tl01kq 612 16 IO IO NNP cord-010027-r0tl01kq 612 17 Ellis Ellis NNP cord-010027-r0tl01kq 612 18 ; ; : cord-010027-r0tl01kq 612 19 P P NNP cord-010027-r0tl01kq 612 20 A A NNP cord-010027-r0tl01kq 612 21 Mukherjee Mukherjee NNP cord-010027-r0tl01kq 612 22 University University NNP cord-010027-r0tl01kq 612 23 of of IN cord-010027-r0tl01kq 612 24 Nottingham Nottingham NNP cord-010027-r0tl01kq 612 25 , , , cord-010027-r0tl01kq 612 26 Nottingham Nottingham NNP cord-010027-r0tl01kq 612 27 , , , cord-010027-r0tl01kq 613 1 UK UK NNP cord-010027-r0tl01kq 613 2 Introduction introduction NN cord-010027-r0tl01kq 613 3 : : : cord-010027-r0tl01kq 614 1 Lymphovascular lymphovascular JJ cord-010027-r0tl01kq 614 2 invasion invasion NN cord-010027-r0tl01kq 614 3 ( ( -LRB- cord-010027-r0tl01kq 614 4 LVI LVI NNP cord-010027-r0tl01kq 614 5 ) ) -RRB- cord-010027-r0tl01kq 614 6 is be VBZ cord-010027-r0tl01kq 614 7 an an DT cord-010027-r0tl01kq 614 8 important important JJ cord-010027-r0tl01kq 614 9 step step NN cord-010027-r0tl01kq 614 10 in in IN cord-010027-r0tl01kq 614 11 the the DT cord-010027-r0tl01kq 614 12 metastatic metastatic JJ cord-010027-r0tl01kq 614 13 cascade cascade NN cord-010027-r0tl01kq 614 14 . . . cord-010027-r0tl01kq 615 1 Identification identification NN cord-010027-r0tl01kq 615 2 of of IN cord-010027-r0tl01kq 615 3 a a DT cord-010027-r0tl01kq 615 4 molecular molecular JJ cord-010027-r0tl01kq 615 5 signature signature NN cord-010027-r0tl01kq 615 6 for for IN cord-010027-r0tl01kq 615 7 the the DT cord-010027-r0tl01kq 615 8 LVI LVI NNP cord-010027-r0tl01kq 615 9 positive positive JJ cord-010027-r0tl01kq 615 10 phenotype phenotype NN cord-010027-r0tl01kq 615 11 will will MD cord-010027-r0tl01kq 615 12 help help VB cord-010027-r0tl01kq 615 13 identify identify VB cord-010027-r0tl01kq 615 14 relevant relevant JJ cord-010027-r0tl01kq 615 15 drivers driver NNS cord-010027-r0tl01kq 615 16 and and CC cord-010027-r0tl01kq 615 17 pathways pathway NNS cord-010027-r0tl01kq 615 18 . . . cord-010027-r0tl01kq 616 1 This this DT cord-010027-r0tl01kq 616 2 study study NN cord-010027-r0tl01kq 616 3 aimed aim VBD cord-010027-r0tl01kq 616 4 to to TO cord-010027-r0tl01kq 616 5 investigate investigate VB cord-010027-r0tl01kq 616 6 determinants determinant NNS cord-010027-r0tl01kq 616 7 of of IN cord-010027-r0tl01kq 616 8 LVI LVI NNP cord-010027-r0tl01kq 616 9 from from IN cord-010027-r0tl01kq 616 10 a a DT cord-010027-r0tl01kq 616 11 biomarker biomarker NN cord-010027-r0tl01kq 616 12 database database NN cord-010027-r0tl01kq 616 13 . . . cord-010027-r0tl01kq 617 1 Methods method NNS cord-010027-r0tl01kq 617 2 : : : cord-010027-r0tl01kq 617 3 Biomarkers Biomarkers NNPS cord-010027-r0tl01kq 617 4 ( ( -LRB- cord-010027-r0tl01kq 617 5 n n NN cord-010027-r0tl01kq 617 6 > > XX cord-010027-r0tl01kq 617 7 200 200 CD cord-010027-r0tl01kq 617 8 ) ) -RRB- cord-010027-r0tl01kq 617 9 from from IN cord-010027-r0tl01kq 617 10 a a DT cord-010027-r0tl01kq 617 11 well well RB cord-010027-r0tl01kq 617 12 annotated annotate VBN cord-010027-r0tl01kq 617 13 series series NN cord-010027-r0tl01kq 617 14 ( ( -LRB- cord-010027-r0tl01kq 617 15 n=1929 n=1929 CD cord-010027-r0tl01kq 617 16 ) ) -RRB- cord-010027-r0tl01kq 617 17 were be VBD cord-010027-r0tl01kq 617 18 analysed analyse VBN cord-010027-r0tl01kq 617 19 for for IN cord-010027-r0tl01kq 617 20 correlations correlation NNS cord-010027-r0tl01kq 617 21 with with IN cord-010027-r0tl01kq 617 22 LVI LVI NNP cord-010027-r0tl01kq 617 23 [ [ -LRB- cord-010027-r0tl01kq 617 24 clinical clinical JJ cord-010027-r0tl01kq 617 25 / / SYM cord-010027-r0tl01kq 617 26 IHC IHC NNP cord-010027-r0tl01kq 617 27 ( ( -LRB- cord-010027-r0tl01kq 617 28 D2 D2 NNP cord-010027-r0tl01kq 617 29 - - HYPH cord-010027-r0tl01kq 617 30 40 40 CD cord-010027-r0tl01kq 617 31 ) ) -RRB- cord-010027-r0tl01kq 617 32 supplemented supplement VBD cord-010027-r0tl01kq 617 33 ] ] -RRB- cord-010027-r0tl01kq 617 34 . . . cord-010027-r0tl01kq 618 1 Proteins protein NNS cord-010027-r0tl01kq 618 2 with with IN cord-010027-r0tl01kq 618 3 significant significant JJ cord-010027-r0tl01kq 618 4 associations association NNS cord-010027-r0tl01kq 618 5 with with IN cord-010027-r0tl01kq 618 6 LVI LVI NNP cord-010027-r0tl01kq 618 7 were be VBD cord-010027-r0tl01kq 618 8 interrogated interrogate VBN cord-010027-r0tl01kq 618 9 for for IN cord-010027-r0tl01kq 618 10 pathway pathway NN cord-010027-r0tl01kq 618 11 enrichment enrichment NN cord-010027-r0tl01kq 618 12 analysis analysis NN cord-010027-r0tl01kq 618 13 [ [ -LRB- cord-010027-r0tl01kq 618 14 corrected correct VBN cord-010027-r0tl01kq 618 15 for for IN cord-010027-r0tl01kq 618 16 false false JJ cord-010027-r0tl01kq 618 17 discovery discovery NN cord-010027-r0tl01kq 618 18 rate rate NN cord-010027-r0tl01kq 618 19 ( ( -LRB- cord-010027-r0tl01kq 618 20 FDR FDR NNP cord-010027-r0tl01kq 618 21 ) ) -RRB- cord-010027-r0tl01kq 618 22 ] ] -RRB- cord-010027-r0tl01kq 618 23 , , , cord-010027-r0tl01kq 618 24 using use VBG cord-010027-r0tl01kq 618 25 the the DT cord-010027-r0tl01kq 618 26 STRING string NN cord-010027-r0tl01kq 618 27 9.1 9.1 CD cord-010027-r0tl01kq 618 28 platform platform NN cord-010027-r0tl01kq 618 29 incorporating incorporate VBG cord-010027-r0tl01kq 618 30 Gene Gene NNP cord-010027-r0tl01kq 618 31 Ontology Ontology NNP cord-010027-r0tl01kq 618 32 ( ( -LRB- cord-010027-r0tl01kq 618 33 GO GO NNP cord-010027-r0tl01kq 618 34 ) ) -RRB- cord-010027-r0tl01kq 618 35 , , , cord-010027-r0tl01kq 618 36 KEGG KEGG NNP cord-010027-r0tl01kq 618 37 and and CC cord-010027-r0tl01kq 618 38 NCI NCI NNP cord-010027-r0tl01kq 618 39 . . . cord-010027-r0tl01kq 619 1 Results result NNS cord-010027-r0tl01kq 619 2 : : : cord-010027-r0tl01kq 620 1 Biomarker Biomarker NNP cord-010027-r0tl01kq 620 2 analysis analysis NN cord-010027-r0tl01kq 620 3 related relate VBN cord-010027-r0tl01kq 620 4 to to IN cord-010027-r0tl01kq 620 5 both both CC cord-010027-r0tl01kq 620 6 clinical clinical JJ cord-010027-r0tl01kq 620 7 / / SYM cord-010027-r0tl01kq 620 8 IHC IHC NNP cord-010027-r0tl01kq 620 9 determined determine VBD cord-010027-r0tl01kq 620 10 LVI LVI NNP cord-010027-r0tl01kq 620 11 identified identify VBD cord-010027-r0tl01kq 620 12 35 35 CD cord-010027-r0tl01kq 620 13 positively positively RB cord-010027-r0tl01kq 620 14 associated associate VBN cord-010027-r0tl01kq 620 15 markers marker NNS cord-010027-r0tl01kq 620 16 , , , cord-010027-r0tl01kq 620 17 14 14 CD cord-010027-r0tl01kq 620 18 in in IN cord-010027-r0tl01kq 620 19 both both CC cord-010027-r0tl01kq 620 20 clinical clinical JJ cord-010027-r0tl01kq 620 21 and and CC cord-010027-r0tl01kq 620 22 IHC IHC NNP cord-010027-r0tl01kq 620 23 categories category NNS cord-010027-r0tl01kq 620 24 ( ( -LRB- cord-010027-r0tl01kq 620 25 e.g. e.g. RB cord-010027-r0tl01kq 620 26 ADA3 ADA3 NNP cord-010027-r0tl01kq 620 27 , , , cord-010027-r0tl01kq 620 28 CD8 CD8 NNP cord-010027-r0tl01kq 620 29 , , , cord-010027-r0tl01kq 620 30 FOXP3 FOXP3 NNP cord-010027-r0tl01kq 620 31 , , , cord-010027-r0tl01kq 620 32 KPNA2 KPNA2 NNP cord-010027-r0tl01kq 620 33 ) ) -RRB- cord-010027-r0tl01kq 620 34 . . . cord-010027-r0tl01kq 621 1 A a DT cord-010027-r0tl01kq 621 2 further further JJ cord-010027-r0tl01kq 621 3 21 21 CD cord-010027-r0tl01kq 621 4 markers marker NNS cord-010027-r0tl01kq 621 5 were be VBD cord-010027-r0tl01kq 621 6 negatively negatively RB cord-010027-r0tl01kq 621 7 associated associate VBN cord-010027-r0tl01kq 621 8 , , , cord-010027-r0tl01kq 621 9 8 8 CD cord-010027-r0tl01kq 621 10 in in IN cord-010027-r0tl01kq 621 11 both both DT cord-010027-r0tl01kq 621 12 categories category NNS cord-010027-r0tl01kq 621 13 ( ( -LRB- cord-010027-r0tl01kq 621 14 e.g. e.g. RB cord-010027-r0tl01kq 621 15 Bcl2 Bcl2 NNP cord-010027-r0tl01kq 621 16 , , , cord-010027-r0tl01kq 621 17 BRCA1 BRCA1 NNP cord-010027-r0tl01kq 621 18 , , , cord-010027-r0tl01kq 621 19 MAGE3 MAGE3 NNP cord-010027-r0tl01kq 621 20 and and CC cord-010027-r0tl01kq 621 21 SOX10 SOX10 NNP cord-010027-r0tl01kq 621 22 ) ) -RRB- cord-010027-r0tl01kq 621 23 . . . cord-010027-r0tl01kq 622 1 Significant significant JJ cord-010027-r0tl01kq 622 2 pathways pathway NNS cord-010027-r0tl01kq 622 3 ( ( -LRB- cord-010027-r0tl01kq 622 4 p<0.001 p<0.001 JJ cord-010027-r0tl01kq 622 5 ) ) -RRB- cord-010027-r0tl01kq 622 6 unifying unify VBG cord-010027-r0tl01kq 622 7 the the DT cord-010027-r0tl01kq 622 8 positively positively RB cord-010027-r0tl01kq 622 9 associated associate VBN cord-010027-r0tl01kq 622 10 proteins protein NNS cord-010027-r0tl01kq 622 11 include include VBP cord-010027-r0tl01kq 622 12 metabolism metabolism NN cord-010027-r0tl01kq 622 13 , , , cord-010027-r0tl01kq 622 14 immune immune JJ cord-010027-r0tl01kq 622 15 responses response NNS cord-010027-r0tl01kq 622 16 ( ( -LRB- cord-010027-r0tl01kq 622 17 T t NN cord-010027-r0tl01kq 622 18 - - HYPH cord-010027-r0tl01kq 622 19 cell cell NN cord-010027-r0tl01kq 622 20 regulation regulation NN cord-010027-r0tl01kq 622 21 and and CC cord-010027-r0tl01kq 622 22 differentiation differentiation NN cord-010027-r0tl01kq 622 23 ) ) -RRB- cord-010027-r0tl01kq 622 24 , , , cord-010027-r0tl01kq 622 25 cell cell NN cord-010027-r0tl01kq 622 26 activation activation NN cord-010027-r0tl01kq 622 27 and and CC cord-010027-r0tl01kq 622 28 transcription transcription NN cord-010027-r0tl01kq 622 29 [ [ -LRB- cord-010027-r0tl01kq 622 30 GO go NN cord-010027-r0tl01kq 622 31 ] ] -RRB- cord-010027-r0tl01kq 622 32 ; ; : cord-010027-r0tl01kq 622 33 T t NN cord-010027-r0tl01kq 622 34 - - HYPH cord-010027-r0tl01kq 622 35 cell cell NN cord-010027-r0tl01kq 622 36 receptor receptor NN cord-010027-r0tl01kq 622 37 signalling signal VBG cord-010027-r0tl01kq 622 38 pathways pathway NNS cord-010027-r0tl01kq 622 39 and and CC cord-010027-r0tl01kq 622 40 pathways pathway NNS cord-010027-r0tl01kq 622 41 in in IN cord-010027-r0tl01kq 622 42 cancer cancer NN cord-010027-r0tl01kq 622 43 and and CC cord-010027-r0tl01kq 622 44 haematopoietic haematopoietic JJ cord-010027-r0tl01kq 622 45 cell cell NN cord-010027-r0tl01kq 622 46 lineages lineage NNS cord-010027-r0tl01kq 622 47 [ [ -LRB- cord-010027-r0tl01kq 622 48 KEGG KEGG NNP cord-010027-r0tl01kq 622 49 ] ] -RRB- cord-010027-r0tl01kq 622 50 . . . cord-010027-r0tl01kq 623 1 For for IN cord-010027-r0tl01kq 623 2 negatively negatively RB cord-010027-r0tl01kq 623 3 associated associate VBN cord-010027-r0tl01kq 623 4 proteins protein NNS cord-010027-r0tl01kq 623 5 , , , cord-010027-r0tl01kq 623 6 the the DT cord-010027-r0tl01kq 623 7 following follow VBG cord-010027-r0tl01kq 623 8 were be VBD cord-010027-r0tl01kq 623 9 significant significant JJ cord-010027-r0tl01kq 623 10 : : : cord-010027-r0tl01kq 623 11 ubiquitination ubiquitination NN cord-010027-r0tl01kq 623 12 processes process NNS cord-010027-r0tl01kq 623 13 , , , cord-010027-r0tl01kq 623 14 regulation regulation NN cord-010027-r0tl01kq 623 15 of of IN cord-010027-r0tl01kq 623 16 the the DT cord-010027-r0tl01kq 623 17 mitosis mitosis NN cord-010027-r0tl01kq 623 18 [ [ -LRB- cord-010027-r0tl01kq 623 19 GO go VB cord-010027-r0tl01kq 623 20 ] ] -RRB- cord-010027-r0tl01kq 623 21 ; ; : cord-010027-r0tl01kq 623 22 p53 p53 NN cord-010027-r0tl01kq 623 23 pathways pathway NNS cord-010027-r0tl01kq 623 24 [ [ -LRB- cord-010027-r0tl01kq 623 25 KEGG KEGG NNP cord-010027-r0tl01kq 623 26 ] ] -RRB- cord-010027-r0tl01kq 623 27 and and CC cord-010027-r0tl01kq 623 28 apoptotic apoptotic JJ cord-010027-r0tl01kq 623 29 and and CC cord-010027-r0tl01kq 623 30 cell cell NN cord-010027-r0tl01kq 623 31 cycle cycle NN cord-010027-r0tl01kq 623 32 pathways pathway NNS cord-010027-r0tl01kq 623 33 [ [ -LRB- cord-010027-r0tl01kq 623 34 GO go VB cord-010027-r0tl01kq 623 35 & & CC cord-010027-r0tl01kq 623 36 KEGG KEGG NNP cord-010027-r0tl01kq 623 37 ] ] -RRB- cord-010027-r0tl01kq 623 38 . . . cord-010027-r0tl01kq 624 1 On on IN cord-010027-r0tl01kq 624 2 cross cross NN cord-010027-r0tl01kq 624 3 - - JJ cord-010027-r0tl01kq 624 4 validating validate VBG cord-010027-r0tl01kq 624 5 a a DT cord-010027-r0tl01kq 624 6 subset subset NN cord-010027-r0tl01kq 624 7 included include VBN cord-010027-r0tl01kq 624 8 in in IN cord-010027-r0tl01kq 624 9 the the DT cord-010027-r0tl01kq 624 10 METABRIC METABRIC NNP cord-010027-r0tl01kq 624 11 cohort cohort NN cord-010027-r0tl01kq 624 12 , , , cord-010027-r0tl01kq 624 13 there there EX cord-010027-r0tl01kq 624 14 were be VBD cord-010027-r0tl01kq 624 15 overlapping overlap VBG cord-010027-r0tl01kq 624 16 enrichments enrichment NNS cord-010027-r0tl01kq 624 17 for for IN cord-010027-r0tl01kq 624 18 immune immune JJ cord-010027-r0tl01kq 624 19 response response NN cord-010027-r0tl01kq 624 20 regulation regulation NN cord-010027-r0tl01kq 624 21 ( ( -LRB- cord-010027-r0tl01kq 624 22 GO GO NNP cord-010027-r0tl01kq 624 23 ) ) -RRB- cord-010027-r0tl01kq 624 24 and and CC cord-010027-r0tl01kq 624 25 haematopoietic haematopoietic JJ cord-010027-r0tl01kq 624 26 cell cell NN cord-010027-r0tl01kq 624 27 lineages lineage NNS cord-010027-r0tl01kq 624 28 ( ( -LRB- cord-010027-r0tl01kq 624 29 KEGG KEGG NNP cord-010027-r0tl01kq 624 30 ) ) -RRB- cord-010027-r0tl01kq 624 31 . . . cord-010027-r0tl01kq 625 1 Conclusions conclusion NNS cord-010027-r0tl01kq 625 2 : : : cord-010027-r0tl01kq 626 1 These these DT cord-010027-r0tl01kq 626 2 preliminary preliminary JJ cord-010027-r0tl01kq 626 3 findings finding NNS cord-010027-r0tl01kq 626 4 are be VBP cord-010027-r0tl01kq 626 5 the the DT cord-010027-r0tl01kq 626 6 first first JJ cord-010027-r0tl01kq 626 7 to to TO cord-010027-r0tl01kq 626 8 unify unify VB cord-010027-r0tl01kq 626 9 biomarkers biomarker NNS cord-010027-r0tl01kq 626 10 for for IN cord-010027-r0tl01kq 626 11 LVI LVI NNP cord-010027-r0tl01kq 626 12 pathway pathway NN cord-010027-r0tl01kq 626 13 analysis analysis NN cord-010027-r0tl01kq 626 14 in in IN cord-010027-r0tl01kq 626 15 BC BC NNP cord-010027-r0tl01kq 626 16 , , , cord-010027-r0tl01kq 626 17 using use VBG cord-010027-r0tl01kq 626 18 protein protein NN cord-010027-r0tl01kq 626 19 based base VBN cord-010027-r0tl01kq 626 20 data datum NNS cord-010027-r0tl01kq 626 21 . . . cord-010027-r0tl01kq 627 1 Within within IN cord-010027-r0tl01kq 627 2 the the DT cord-010027-r0tl01kq 627 3 constraints constraint NNS cord-010027-r0tl01kq 627 4 of of IN cord-010027-r0tl01kq 627 5 selection selection NN cord-010027-r0tl01kq 627 6 bias bias NN cord-010027-r0tl01kq 627 7 , , , cord-010027-r0tl01kq 627 8 data datum NNS cord-010027-r0tl01kq 627 9 mining mining NN cord-010027-r0tl01kq 627 10 from from IN cord-010027-r0tl01kq 627 11 immunohistochemistry immunohistochemistry NN cord-010027-r0tl01kq 627 12 of of IN cord-010027-r0tl01kq 627 13 multiple multiple JJ cord-010027-r0tl01kq 627 14 biomarkers biomarker NNS cord-010027-r0tl01kq 627 15 in in IN cord-010027-r0tl01kq 627 16 relation relation NN cord-010027-r0tl01kq 627 17 to to IN cord-010027-r0tl01kq 627 18 biological biological JJ cord-010027-r0tl01kq 627 19 processes process NNS cord-010027-r0tl01kq 627 20 hold hold VBP cord-010027-r0tl01kq 627 21 promise promise NN cord-010027-r0tl01kq 627 22 . . . cord-010027-r0tl01kq 628 1 * * NFP cord-010027-r0tl01kq 628 2 AM am VBP cord-010027-r0tl01kq 628 3 supported support VBN cord-010027-r0tl01kq 628 4 by by IN cord-010027-r0tl01kq 628 5 the the DT cord-010027-r0tl01kq 628 6 NIHR NIHR NNP cord-010027-r0tl01kq 628 7 and and CC cord-010027-r0tl01kq 628 8 the the DT cord-010027-r0tl01kq 628 9 Academy Academy NNP cord-010027-r0tl01kq 628 10 of of IN cord-010027-r0tl01kq 628 11 Medical Medical NNP cord-010027-r0tl01kq 628 12 Sciences Sciences NNPS cord-010027-r0tl01kq 629 1 ABSTRACTS abstract NNS cord-010027-r0tl01kq 630 1 S·17 S·17 NNP cord-010027-r0tl01kq 630 2 Assessment Assessment NNP cord-010027-r0tl01kq 630 3 of of IN cord-010027-r0tl01kq 630 4 HER2 HER2 NNP cord-010027-r0tl01kq 630 5 Status Status NNP cord-010027-r0tl01kq 630 6 on on IN cord-010027-r0tl01kq 630 7 Needle Needle NNP cord-010027-r0tl01kq 630 8 Core Core NNP cord-010027-r0tl01kq 630 9 Biopsy Biopsy NNP cord-010027-r0tl01kq 630 10 of of IN cord-010027-r0tl01kq 630 11 Breast Breast NNP cord-010027-r0tl01kq 630 12 Cancer Cancer NNP cord-010027-r0tl01kq 630 13 : : : cord-010027-r0tl01kq 631 1 Impact impact NN cord-010027-r0tl01kq 631 2 of of IN cord-010027-r0tl01kq 631 3 Histopathological Histopathological NNP cord-010027-r0tl01kq 631 4 Concordance Concordance NNP cord-010027-r0tl01kq 631 5 P P NNP cord-010027-r0tl01kq 631 6 M M NNP cord-010027-r0tl01kq 631 7 Pigera Pigera NNP cord-010027-r0tl01kq 631 8 ; ; : cord-010027-r0tl01kq 632 1 AHS AHS NNP cord-010027-r0tl01kq 632 2 Lee Lee NNP cord-010027-r0tl01kq 632 3 ; ; : cord-010027-r0tl01kq 632 4 IO IO NNP cord-010027-r0tl01kq 632 5 Ellis Ellis NNP cord-010027-r0tl01kq 632 6 ; ; : cord-010027-r0tl01kq 632 7 EA EA NNP cord-010027-r0tl01kq 632 8 Rakha Rakha NNP cord-010027-r0tl01kq 632 9 ; ; : cord-010027-r0tl01kq 632 10 Z Z NNP cord-010027-r0tl01kq 632 11 Hodi Hodi NNP cord-010027-r0tl01kq 632 12 Nottingham Nottingham NNP cord-010027-r0tl01kq 632 13 City City NNP cord-010027-r0tl01kq 632 14 Hospital Hospital NNP cord-010027-r0tl01kq 632 15 , , , cord-010027-r0tl01kq 632 16 Nottingham Nottingham NNP cord-010027-r0tl01kq 632 17 , , , cord-010027-r0tl01kq 632 18 UK UK NNP cord-010027-r0tl01kq 632 19 One one CD cord-010027-r0tl01kq 632 20 of of IN cord-010027-r0tl01kq 632 21 the the DT cord-010027-r0tl01kq 632 22 key key JJ cord-010027-r0tl01kq 632 23 recommendations recommendation NNS cord-010027-r0tl01kq 632 24 introduced introduce VBN cord-010027-r0tl01kq 632 25 in in IN cord-010027-r0tl01kq 632 26 the the DT cord-010027-r0tl01kq 632 27 ASCO ASCO NNP cord-010027-r0tl01kq 632 28 / / SYM cord-010027-r0tl01kq 632 29 CAP CAP NNP cord-010027-r0tl01kq 632 30 update update NN cord-010027-r0tl01kq 632 31 guideline guideline NN cord-010027-r0tl01kq 632 32 recommendation recommendation NN cord-010027-r0tl01kq 632 33 on on IN cord-010027-r0tl01kq 632 34 HER2 HER2 NNP cord-010027-r0tl01kq 632 35 testing testing NN cord-010027-r0tl01kq 632 36 is be VBZ cord-010027-r0tl01kq 632 37 the the DT cord-010027-r0tl01kq 632 38 novel novel JJ cord-010027-r0tl01kq 632 39 concept concept NN cord-010027-r0tl01kq 632 40 of of IN cord-010027-r0tl01kq 632 41 " " `` cord-010027-r0tl01kq 632 42 histopathological histopathological NNP cord-010027-r0tl01kq 632 43 concordance concordance NN cord-010027-r0tl01kq 632 44 . . . cord-010027-r0tl01kq 633 1 " " `` cord-010027-r0tl01kq 633 2 It -PRON- PRP cord-010027-r0tl01kq 633 3 is be VBZ cord-010027-r0tl01kq 633 4 proposed propose VBN cord-010027-r0tl01kq 633 5 that that IN cord-010027-r0tl01kq 633 6 certain certain JJ cord-010027-r0tl01kq 633 7 tumour tumour NN cord-010027-r0tl01kq 633 8 morphological morphological JJ cord-010027-r0tl01kq 633 9 features feature NNS cord-010027-r0tl01kq 633 10 such such JJ cord-010027-r0tl01kq 633 11 as as IN cord-010027-r0tl01kq 633 12 histologic histologic JJ cord-010027-r0tl01kq 633 13 type type NN cord-010027-r0tl01kq 633 14 and and CC cord-010027-r0tl01kq 633 15 grade grade NN cord-010027-r0tl01kq 633 16 should should MD cord-010027-r0tl01kq 633 17 trigger trigger VB cord-010027-r0tl01kq 633 18 repeating repeat VBG cord-010027-r0tl01kq 633 19 a a DT cord-010027-r0tl01kq 633 20 molecular molecular JJ cord-010027-r0tl01kq 633 21 test test NN cord-010027-r0tl01kq 633 22 in in IN cord-010027-r0tl01kq 633 23 cases case NNS cord-010027-r0tl01kq 633 24 of of IN cord-010027-r0tl01kq 633 25 " " `` cord-010027-r0tl01kq 633 26 discordance discordance NN cord-010027-r0tl01kq 633 27 " " '' cord-010027-r0tl01kq 633 28 . . . cord-010027-r0tl01kq 634 1 In in IN cord-010027-r0tl01kq 634 2 this this DT cord-010027-r0tl01kq 634 3 study study NN cord-010027-r0tl01kq 634 4 we -PRON- PRP cord-010027-r0tl01kq 634 5 have have VBP cord-010027-r0tl01kq 634 6 we -PRON- PRP cord-010027-r0tl01kq 634 7 have have VBP cord-010027-r0tl01kq 634 8 reviewed review VBN cord-010027-r0tl01kq 634 9 3104 3104 CD cord-010027-r0tl01kq 634 10 breast breast NN cord-010027-r0tl01kq 634 11 cancer cancer NN cord-010027-r0tl01kq 634 12 cases case NNS cord-010027-r0tl01kq 634 13 consecutively consecutively RB cord-010027-r0tl01kq 634 14 reported report VBN cord-010027-r0tl01kq 634 15 in in IN cord-010027-r0tl01kq 634 16 routine routine JJ cord-010027-r0tl01kq 634 17 practice practice NN cord-010027-r0tl01kq 634 18 in in IN cord-010027-r0tl01kq 634 19 Nottingham Nottingham NNP cord-010027-r0tl01kq 634 20 in in IN cord-010027-r0tl01kq 634 21 the the DT cord-010027-r0tl01kq 634 22 last last JJ cord-010027-r0tl01kq 634 23 4 4 CD cord-010027-r0tl01kq 634 24 years year NNS cord-010027-r0tl01kq 634 25 . . . cord-010027-r0tl01kq 635 1 Data datum NNS cord-010027-r0tl01kq 635 2 on on IN cord-010027-r0tl01kq 635 3 HER2 HER2 NNP cord-010027-r0tl01kq 635 4 status status NN cord-010027-r0tl01kq 635 5 was be VBD cord-010027-r0tl01kq 635 6 collected collect VBN cord-010027-r0tl01kq 635 7 and and CC cord-010027-r0tl01kq 635 8 cases case NNS cord-010027-r0tl01kq 635 9 with with IN cord-010027-r0tl01kq 635 10 HER2 HER2 NNP cord-010027-r0tl01kq 635 11 assessed assess VBN cord-010027-r0tl01kq 635 12 on on IN cord-010027-r0tl01kq 635 13 resection resection NN cord-010027-r0tl01kq 635 14 specimens specimen NNS cord-010027-r0tl01kq 635 15 ( ( -LRB- cord-010027-r0tl01kq 635 16 RS rs NN cord-010027-r0tl01kq 635 17 ) ) -RRB- cord-010027-r0tl01kq 635 18 were be VBD cord-010027-r0tl01kq 635 19 analysed analyse VBN cord-010027-r0tl01kq 635 20 in in IN cord-010027-r0tl01kq 635 21 details detail NNS cord-010027-r0tl01kq 635 22 . . . cord-010027-r0tl01kq 636 1 Results result NNS cord-010027-r0tl01kq 636 2 : : : cord-010027-r0tl01kq 636 3 of of IN cord-010027-r0tl01kq 636 4 all all DT cord-010027-r0tl01kq 636 5 cases case NNS cord-010027-r0tl01kq 636 6 , , , cord-010027-r0tl01kq 637 1 98 98 CD cord-010027-r0tl01kq 637 2 patients patient NNS cord-010027-r0tl01kq 637 3 ( ( -LRB- cord-010027-r0tl01kq 637 4 3 3 CD cord-010027-r0tl01kq 637 5 % % NN cord-010027-r0tl01kq 637 6 ) ) -RRB- cord-010027-r0tl01kq 637 7 had have VBD cord-010027-r0tl01kq 637 8 HER2 HER2 NNP cord-010027-r0tl01kq 637 9 status status NN cord-010027-r0tl01kq 637 10 assessed assess VBN cord-010027-r0tl01kq 637 11 on on IN cord-010027-r0tl01kq 637 12 core core NN cord-010027-r0tl01kq 637 13 biopsy biopsy NN cord-010027-r0tl01kq 637 14 and and CC cord-010027-r0tl01kq 637 15 the the DT cord-010027-r0tl01kq 637 16 corresponding corresponding JJ cord-010027-r0tl01kq 637 17 tumour tumour NN cord-010027-r0tl01kq 637 18 RS rs NN cord-010027-r0tl01kq 637 19 . . . cord-010027-r0tl01kq 638 1 The the DT cord-010027-r0tl01kq 638 2 main main JJ cord-010027-r0tl01kq 638 3 reasons reason NNS cord-010027-r0tl01kq 638 4 for for IN cord-010027-r0tl01kq 638 5 a a DT cord-010027-r0tl01kq 638 6 repeat repeat NN cord-010027-r0tl01kq 638 7 were be VBD cord-010027-r0tl01kq 638 8 tumour tumour NN cord-010027-r0tl01kq 638 9 multifocality multifocality NN cord-010027-r0tl01kq 638 10 and and CC cord-010027-r0tl01kq 638 11 morphologically morphologically RB cord-010027-r0tl01kq 638 12 different different JJ cord-010027-r0tl01kq 638 13 or or CC cord-010027-r0tl01kq 638 14 heterogeneous heterogeneous JJ cord-010027-r0tl01kq 638 15 tumours tumour NNS cord-010027-r0tl01kq 638 16 . . . cord-010027-r0tl01kq 639 1 A a DT cord-010027-r0tl01kq 639 2 few few JJ cord-010027-r0tl01kq 639 3 cases case NNS cord-010027-r0tl01kq 639 4 were be VBD cord-010027-r0tl01kq 639 5 repeated repeat VBN cord-010027-r0tl01kq 639 6 because because IN cord-010027-r0tl01kq 639 7 of of IN cord-010027-r0tl01kq 639 8 borderline borderline JJ cord-010027-r0tl01kq 639 9 negative negative JJ cord-010027-r0tl01kq 639 10 FISH fish NN cord-010027-r0tl01kq 639 11 results result NNS cord-010027-r0tl01kq 639 12 or or CC cord-010027-r0tl01kq 639 13 neoadjuvant neoadjuvant JJ cord-010027-r0tl01kq 639 14 therapy therapy NN cord-010027-r0tl01kq 639 15 . . . cord-010027-r0tl01kq 640 1 18 18 CD cord-010027-r0tl01kq 640 2 cases case NNS cord-010027-r0tl01kq 640 3 were be VBD cord-010027-r0tl01kq 640 4 repeated repeat VBN cord-010027-r0tl01kq 640 5 due due IN cord-010027-r0tl01kq 640 6 to to IN cord-010027-r0tl01kq 640 7 insufficient insufficient JJ cord-010027-r0tl01kq 640 8 tumour tumour NN cord-010027-r0tl01kq 640 9 in in IN cord-010027-r0tl01kq 640 10 the the DT cord-010027-r0tl01kq 640 11 core core NN cord-010027-r0tl01kq 640 12 biopsy biopsy NN cord-010027-r0tl01kq 640 13 . . . cord-010027-r0tl01kq 641 1 In in IN cord-010027-r0tl01kq 641 2 this this DT cord-010027-r0tl01kq 641 3 study study NN cord-010027-r0tl01kq 641 4 the the DT cord-010027-r0tl01kq 641 5 HER2 HER2 NNP cord-010027-r0tl01kq 641 6 status status NN cord-010027-r0tl01kq 641 7 of of IN cord-010027-r0tl01kq 641 8 the the DT cord-010027-r0tl01kq 641 9 index index NN cord-010027-r0tl01kq 641 10 tumour tumour NN cord-010027-r0tl01kq 641 11 was be VBD cord-010027-r0tl01kq 641 12 changed change VBN cord-010027-r0tl01kq 641 13 in in IN cord-010027-r0tl01kq 641 14 2 2 CD cord-010027-r0tl01kq 641 15 cases case NNS cord-010027-r0tl01kq 641 16 and and CC cord-010027-r0tl01kq 641 17 both both DT cord-010027-r0tl01kq 641 18 were be VBD cord-010027-r0tl01kq 641 19 in in IN cord-010027-r0tl01kq 641 20 the the DT cord-010027-r0tl01kq 641 21 borderline borderline JJ cord-010027-r0tl01kq 641 22 result result NN cord-010027-r0tl01kq 641 23 category category NN cord-010027-r0tl01kq 641 24 . . . cord-010027-r0tl01kq 642 1 HER2 her2 JJ cord-010027-r0tl01kq 642 2 testing testing NN cord-010027-r0tl01kq 642 3 of of IN cord-010027-r0tl01kq 642 4 different different JJ cord-010027-r0tl01kq 642 5 tumour tumour NN cord-010027-r0tl01kq 642 6 foci foci NN cord-010027-r0tl01kq 642 7 of of IN cord-010027-r0tl01kq 642 8 multifocal multifocal JJ cord-010027-r0tl01kq 642 9 or or CC cord-010027-r0tl01kq 642 10 morphological morphological JJ cord-010027-r0tl01kq 642 11 heterogeneous heterogeneous JJ cord-010027-r0tl01kq 642 12 tumours tumour NNS cord-010027-r0tl01kq 642 13 was be VBD cord-010027-r0tl01kq 642 14 consistent consistent JJ cord-010027-r0tl01kq 642 15 with with IN cord-010027-r0tl01kq 642 16 that that DT cord-010027-r0tl01kq 642 17 of of IN cord-010027-r0tl01kq 642 18 the the DT cord-010027-r0tl01kq 642 19 index index NN cord-010027-r0tl01kq 642 20 tumour tumour NN cord-010027-r0tl01kq 642 21 assessed assess VBN cord-010027-r0tl01kq 642 22 on on IN cord-010027-r0tl01kq 642 23 the the DT cord-010027-r0tl01kq 642 24 core core NN cord-010027-r0tl01kq 642 25 biopsy biopsy NN cord-010027-r0tl01kq 642 26 apart apart RB cord-010027-r0tl01kq 642 27 from from IN cord-010027-r0tl01kq 642 28 two two CD cord-010027-r0tl01kq 642 29 cases case NNS cord-010027-r0tl01kq 642 30 ; ; : cord-010027-r0tl01kq 642 31 one one CD cord-010027-r0tl01kq 642 32 positive positive JJ cord-010027-r0tl01kq 642 33 and and CC cord-010027-r0tl01kq 642 34 one one CD cord-010027-r0tl01kq 642 35 negative negative JJ cord-010027-r0tl01kq 642 36 . . . cord-010027-r0tl01kq 643 1 17 17 CD cord-010027-r0tl01kq 643 2 tumours tumour NNS cord-010027-r0tl01kq 643 3 were be VBD cord-010027-r0tl01kq 643 4 upgraded upgrade VBN cord-010027-r0tl01kq 643 5 from from IN cord-010027-r0tl01kq 643 6 grade grade NN cord-010027-r0tl01kq 643 7 2 2 CD cord-010027-r0tl01kq 643 8 on on IN cord-010027-r0tl01kq 643 9 core core NN cord-010027-r0tl01kq 643 10 to to IN cord-010027-r0tl01kq 643 11 grade grade NN cord-010027-r0tl01kq 643 12 3 3 CD cord-010027-r0tl01kq 643 13 on on IN cord-010027-r0tl01kq 643 14 excision excision NN cord-010027-r0tl01kq 643 15 and and CC cord-010027-r0tl01kq 643 16 HER2 HER2 NNP cord-010027-r0tl01kq 643 17 status status NN cord-010027-r0tl01kq 643 18 did do VBD cord-010027-r0tl01kq 643 19 not not RB cord-010027-r0tl01kq 643 20 change change VB cord-010027-r0tl01kq 643 21 . . . cord-010027-r0tl01kq 644 1 No no DT cord-010027-r0tl01kq 644 2 contribution contribution NN cord-010027-r0tl01kq 644 3 of of IN cord-010027-r0tl01kq 644 4 hormone hormone NN cord-010027-r0tl01kq 644 5 receptor receptor NN cord-010027-r0tl01kq 644 6 or or CC cord-010027-r0tl01kq 644 7 tumour tumour NN cord-010027-r0tl01kq 644 8 type type NN cord-010027-r0tl01kq 644 9 was be VBD cord-010027-r0tl01kq 644 10 identified identify VBN cord-010027-r0tl01kq 644 11 . . . cord-010027-r0tl01kq 645 1 Conclusion conclusion NN cord-010027-r0tl01kq 645 2 : : : cord-010027-r0tl01kq 645 3 There there EX cord-010027-r0tl01kq 645 4 is be VBZ cord-010027-r0tl01kq 645 5 excellent excellent JJ cord-010027-r0tl01kq 645 6 agreement agreement NN cord-010027-r0tl01kq 645 7 between between IN cord-010027-r0tl01kq 645 8 HER2 HER2 NNP cord-010027-r0tl01kq 645 9 assessed assess VBN cord-010027-r0tl01kq 645 10 in in IN cord-010027-r0tl01kq 645 11 core core NN cord-010027-r0tl01kq 645 12 biopsy biopsy NN cord-010027-r0tl01kq 645 13 and and CC cord-010027-r0tl01kq 645 14 RS rs NN cord-010027-r0tl01kq 645 15 . . . cord-010027-r0tl01kq 646 1 Histopathological Histopathological NNP cord-010027-r0tl01kq 646 2 discordance discordance NN cord-010027-r0tl01kq 646 3 seems seem VBZ cord-010027-r0tl01kq 646 4 to to TO cord-010027-r0tl01kq 646 5 play play VB cord-010027-r0tl01kq 646 6 a a DT cord-010027-r0tl01kq 646 7 minor minor JJ cord-010027-r0tl01kq 646 8 role role NN cord-010027-r0tl01kq 646 9 which which WDT cord-010027-r0tl01kq 646 10 does do VBZ cord-010027-r0tl01kq 646 11 not not RB cord-010027-r0tl01kq 646 12 justify justify VB cord-010027-r0tl01kq 646 13 test test NN cord-010027-r0tl01kq 646 14 repeat repeat NN cord-010027-r0tl01kq 646 15 in in IN cord-010027-r0tl01kq 646 16 routine routine JJ cord-010027-r0tl01kq 646 17 practice practice NN cord-010027-r0tl01kq 646 18 . . . cord-010027-r0tl01kq 647 1 Tamoxifen tamoxifen NN cord-010027-r0tl01kq 647 2 prevents prevent VBZ cord-010027-r0tl01kq 647 3 breast breast NN cord-010027-r0tl01kq 647 4 cancer cancer NN cord-010027-r0tl01kq 647 5 in in IN cord-010027-r0tl01kq 647 6 a a DT cord-010027-r0tl01kq 647 7 sub sub JJ cord-010027-r0tl01kq 647 8 - - JJ cord-010027-r0tl01kq 647 9 set set VBN cord-010027-r0tl01kq 647 10 of of IN cord-010027-r0tl01kq 647 11 high high JJ cord-010027-r0tl01kq 647 12 - - HYPH cord-010027-r0tl01kq 647 13 risk risk NN cord-010027-r0tl01kq 647 14 women woman NNS cord-010027-r0tl01kq 647 15 in in IN cord-010027-r0tl01kq 647 16 a a DT cord-010027-r0tl01kq 647 17 mechanism mechanism NN cord-010027-r0tl01kq 647 18 that that WDT cord-010027-r0tl01kq 647 19 appears appear VBZ cord-010027-r0tl01kq 647 20 to to TO cord-010027-r0tl01kq 647 21 be be VB cord-010027-r0tl01kq 647 22 dependent dependent JJ cord-010027-r0tl01kq 647 23 on on IN cord-010027-r0tl01kq 647 24 reduction reduction NN cord-010027-r0tl01kq 647 25 of of IN cord-010027-r0tl01kq 647 26 MD MD NNP cord-010027-r0tl01kq 647 27 . . . cord-010027-r0tl01kq 648 1 Animal animal NN cord-010027-r0tl01kq 648 2 model model NN cord-010027-r0tl01kq 648 3 studies study NNS cord-010027-r0tl01kq 648 4 suggest suggest VBP cord-010027-r0tl01kq 648 5 that that IN cord-010027-r0tl01kq 648 6 tamoxifen tamoxifen NNP cord-010027-r0tl01kq 648 7 remodels remodel VBZ cord-010027-r0tl01kq 648 8 the the DT cord-010027-r0tl01kq 648 9 mammary mammary JJ cord-010027-r0tl01kq 648 10 stroma stroma NN cord-010027-r0tl01kq 648 11 to to IN cord-010027-r0tl01kq 648 12 a a DT cord-010027-r0tl01kq 648 13 tumour tumour NN cord-010027-r0tl01kq 648 14 - - HYPH cord-010027-r0tl01kq 648 15 inhibitory inhibitory JJ cord-010027-r0tl01kq 648 16 phenotype phenotype NN cord-010027-r0tl01kq 648 17 . . . cord-010027-r0tl01kq 649 1 This this DT cord-010027-r0tl01kq 649 2 study study NN cord-010027-r0tl01kq 649 3 aims aim VBZ cord-010027-r0tl01kq 649 4 to to TO cord-010027-r0tl01kq 649 5 analyse analyse VB cord-010027-r0tl01kq 649 6 the the DT cord-010027-r0tl01kq 649 7 effect effect NN cord-010027-r0tl01kq 649 8 of of IN cord-010027-r0tl01kq 649 9 tamoxifen tamoxifen NN cord-010027-r0tl01kq 649 10 on on IN cord-010027-r0tl01kq 649 11 breast breast NN cord-010027-r0tl01kq 649 12 fibroblast fibroblast NN cord-010027-r0tl01kq 649 13 function function NN cord-010027-r0tl01kq 649 14 and and CC cord-010027-r0tl01kq 649 15 identify identify VB cord-010027-r0tl01kq 649 16 potential potential JJ cord-010027-r0tl01kq 649 17 protumourigenic protumourigenic JJ cord-010027-r0tl01kq 649 18 pathways pathway NNS cord-010027-r0tl01kq 649 19 contributing contribute VBG cord-010027-r0tl01kq 649 20 to to IN cord-010027-r0tl01kq 649 21 density density NN cord-010027-r0tl01kq 649 22 - - HYPH cord-010027-r0tl01kq 649 23 associated associate VBN cord-010027-r0tl01kq 649 24 risk risk NN cord-010027-r0tl01kq 649 25 . . . cord-010027-r0tl01kq 650 1 Methods method NNS cord-010027-r0tl01kq 650 2 : : : cord-010027-r0tl01kq 650 3 Primary primary JJ cord-010027-r0tl01kq 650 4 human human JJ cord-010027-r0tl01kq 650 5 breast breast NN cord-010027-r0tl01kq 650 6 fibroblasts fibroblast NNS cord-010027-r0tl01kq 650 7 were be VBD cord-010027-r0tl01kq 650 8 treated treat VBN cord-010027-r0tl01kq 650 9 with with IN cord-010027-r0tl01kq 650 10 hydroxytamoxifen hydroxytamoxifen NN cord-010027-r0tl01kq 650 11 ( ( -LRB- cord-010027-r0tl01kq 650 12 100nm-5µM 100nm-5µm CD cord-010027-r0tl01kq 650 13 ) ) -RRB- cord-010027-r0tl01kq 650 14 . . . cord-010027-r0tl01kq 651 1 Fibroblast Fibroblast NNP cord-010027-r0tl01kq 651 2 function function NN cord-010027-r0tl01kq 651 3 was be VBD cord-010027-r0tl01kq 651 4 analysed analyse VBN cord-010027-r0tl01kq 651 5 by by IN cord-010027-r0tl01kq 651 6 measuring measure VBG cord-010027-r0tl01kq 651 7 : : : cord-010027-r0tl01kq 651 8 proliferation proliferation NN cord-010027-r0tl01kq 651 9 ; ; : cord-010027-r0tl01kq 651 10 expression expression NN cord-010027-r0tl01kq 651 11 of of IN cord-010027-r0tl01kq 651 12 stromal stromal JJ cord-010027-r0tl01kq 651 13 proteins protein NNS cord-010027-r0tl01kq 651 14 fibronectin fibronectin NN cord-010027-r0tl01kq 651 15 ( ( -LRB- cord-010027-r0tl01kq 651 16 FN FN NNP cord-010027-r0tl01kq 651 17 ) ) -RRB- cord-010027-r0tl01kq 651 18 , , , cord-010027-r0tl01kq 651 19 LOX LOX NNP cord-010027-r0tl01kq 651 20 and and CC cord-010027-r0tl01kq 651 21 collagen collagen NN cord-010027-r0tl01kq 651 22 1 1 CD cord-010027-r0tl01kq 651 23 ; ; : cord-010027-r0tl01kq 651 24 effects effect NNS cord-010027-r0tl01kq 651 25 on on IN cord-010027-r0tl01kq 651 26 TGF TGF NNP cord-010027-r0tl01kq 651 27 - - HYPH cord-010027-r0tl01kq 651 28 β β NN cord-010027-r0tl01kq 651 29 signalling signal VBG cord-010027-r0tl01kq 651 30 via via IN cord-010027-r0tl01kq 651 31 SMAD smad JJ cord-010027-r0tl01kq 651 32 phosphorylation phosphorylation NN cord-010027-r0tl01kq 651 33 and and CC cord-010027-r0tl01kq 651 34 upregulation upregulation NN cord-010027-r0tl01kq 651 35 of of IN cord-010027-r0tl01kq 651 36 the the DT cord-010027-r0tl01kq 651 37 myofibroblast myofibroblast JJ cord-010027-r0tl01kq 651 38 marker marker NN cord-010027-r0tl01kq 651 39 SMA SMA NNP cord-010027-r0tl01kq 651 40 . . . cord-010027-r0tl01kq 652 1 Genome genome NN cord-010027-r0tl01kq 652 2 wide wide JJ cord-010027-r0tl01kq 652 3 analysis analysis NN cord-010027-r0tl01kq 652 4 was be VBD cord-010027-r0tl01kq 652 5 performed perform VBN cord-010027-r0tl01kq 652 6 using use VBG cord-010027-r0tl01kq 652 7 RNA RNA NNP cord-010027-r0tl01kq 652 8 - - HYPH cord-010027-r0tl01kq 652 9 Seq Seq NNP cord-010027-r0tl01kq 652 10 . . . cord-010027-r0tl01kq 653 1 Summary summary NN cord-010027-r0tl01kq 653 2 of of IN cord-010027-r0tl01kq 653 3 Results result NNS cord-010027-r0tl01kq 653 4 : : : cord-010027-r0tl01kq 654 1 Fibroblasts fibroblast NNS cord-010027-r0tl01kq 654 2 from from IN cord-010027-r0tl01kq 654 3 25 25 CD cord-010027-r0tl01kq 654 4 patients patient NNS cord-010027-r0tl01kq 654 5 were be VBD cord-010027-r0tl01kq 654 6 treated treat VBN cord-010027-r0tl01kq 654 7 with with IN cord-010027-r0tl01kq 654 8 tamoxifen tamoxifen NN cord-010027-r0tl01kq 654 9 . . . cord-010027-r0tl01kq 655 1 All all DT cord-010027-r0tl01kq 655 2 patients patient NNS cord-010027-r0tl01kq 655 3 showed show VBD cord-010027-r0tl01kq 655 4 reduced reduced JJ cord-010027-r0tl01kq 655 5 proliferation proliferation NN cord-010027-r0tl01kq 655 6 with with IN cord-010027-r0tl01kq 655 7 treatment treatment NN cord-010027-r0tl01kq 655 8 . . . cord-010027-r0tl01kq 656 1 In in IN cord-010027-r0tl01kq 656 2 62 62 CD cord-010027-r0tl01kq 656 3 % % NN cord-010027-r0tl01kq 656 4 of of IN cord-010027-r0tl01kq 656 5 patients patient NNS cord-010027-r0tl01kq 656 6 tamoxifen tamoxifen NNP cord-010027-r0tl01kq 656 7 treatment treatment NN cord-010027-r0tl01kq 656 8 resulted result VBD cord-010027-r0tl01kq 656 9 in in IN cord-010027-r0tl01kq 656 10 reduced reduce VBN cord-010027-r0tl01kq 656 11 expression expression NN cord-010027-r0tl01kq 656 12 of of IN cord-010027-r0tl01kq 656 13 FN FN NNP cord-010027-r0tl01kq 656 14 . . . cord-010027-r0tl01kq 657 1 TGF TGF NNP cord-010027-r0tl01kq 657 2 - - HYPH cord-010027-r0tl01kq 657 3 β β NN cord-010027-r0tl01kq 657 4 - - HYPH cord-010027-r0tl01kq 657 5 mediated mediate VBN cord-010027-r0tl01kq 657 6 upregulation upregulation NN cord-010027-r0tl01kq 657 7 of of IN cord-010027-r0tl01kq 657 8 SMA SMA NNP cord-010027-r0tl01kq 657 9 and and CC cord-010027-r0tl01kq 657 10 FN FN NNP cord-010027-r0tl01kq 657 11 were be VBD cord-010027-r0tl01kq 657 12 consistently consistently RB cord-010027-r0tl01kq 657 13 inhibited inhibit VBN cord-010027-r0tl01kq 657 14 by by IN cord-010027-r0tl01kq 657 15 tamoxifen tamoxifen NN cord-010027-r0tl01kq 657 16 , , , cord-010027-r0tl01kq 657 17 as as IN cord-010027-r0tl01kq 657 18 was be VBD cord-010027-r0tl01kq 657 19 fibroblast fibroblast NN cord-010027-r0tl01kq 657 20 contraction contraction NN cord-010027-r0tl01kq 657 21 of of IN cord-010027-r0tl01kq 657 22 collagen collagen NN cord-010027-r0tl01kq 657 23 gels gel NNS cord-010027-r0tl01kq 657 24 . . . cord-010027-r0tl01kq 658 1 RNA RNA NNP cord-010027-r0tl01kq 658 2 - - HYPH cord-010027-r0tl01kq 658 3 Seq Seq NNP cord-010027-r0tl01kq 658 4 analysis analysis NN cord-010027-r0tl01kq 658 5 revealed reveal VBD cord-010027-r0tl01kq 658 6 modulation modulation NN cord-010027-r0tl01kq 658 7 of of IN cord-010027-r0tl01kq 658 8 a a DT cord-010027-r0tl01kq 658 9 number number NN cord-010027-r0tl01kq 658 10 of of IN cord-010027-r0tl01kq 658 11 metabolic metabolic JJ cord-010027-r0tl01kq 658 12 pathways pathway NNS cord-010027-r0tl01kq 658 13 by by IN cord-010027-r0tl01kq 658 14 tamoxifen tamoxifen NN cord-010027-r0tl01kq 658 15 , , , cord-010027-r0tl01kq 658 16 including include VBG cord-010027-r0tl01kq 658 17 significant significant JJ cord-010027-r0tl01kq 658 18 upregulation upregulation NN cord-010027-r0tl01kq 658 19 of of IN cord-010027-r0tl01kq 658 20 DHCR7 dhcr7 NN cord-010027-r0tl01kq 658 21 , , , cord-010027-r0tl01kq 658 22 part part NN cord-010027-r0tl01kq 658 23 of of IN cord-010027-r0tl01kq 658 24 the the DT cord-010027-r0tl01kq 658 25 microsomal microsomal NNP cord-010027-r0tl01kq 658 26 antioestrogen antioestrogen NNP cord-010027-r0tl01kq 658 27 binding bind VBG cord-010027-r0tl01kq 658 28 site site NN cord-010027-r0tl01kq 658 29 ( ( -LRB- cord-010027-r0tl01kq 658 30 AEBS AEBS NNP cord-010027-r0tl01kq 658 31 ) ) -RRB- cord-010027-r0tl01kq 658 32 . . . cord-010027-r0tl01kq 659 1 Conclusions conclusion NNS cord-010027-r0tl01kq 659 2 : : : cord-010027-r0tl01kq 660 1 These these DT cord-010027-r0tl01kq 660 2 data datum NNS cord-010027-r0tl01kq 660 3 indicate indicate VBP cord-010027-r0tl01kq 660 4 that that IN cord-010027-r0tl01kq 660 5 tamoxifen tamoxifen NN cord-010027-r0tl01kq 660 6 can can MD cord-010027-r0tl01kq 660 7 directly directly RB cord-010027-r0tl01kq 660 8 remodel remodel VB cord-010027-r0tl01kq 660 9 the the DT cord-010027-r0tl01kq 660 10 stromal stromal JJ cord-010027-r0tl01kq 660 11 microenvironment microenvironment NN cord-010027-r0tl01kq 660 12 , , , cord-010027-r0tl01kq 660 13 generating generate VBG cord-010027-r0tl01kq 660 14 a a DT cord-010027-r0tl01kq 660 15 less less RBR cord-010027-r0tl01kq 660 16 ' ' `` cord-010027-r0tl01kq 660 17 reactive reactive JJ cord-010027-r0tl01kq 660 18 ' ' '' cord-010027-r0tl01kq 660 19 stroma stroma NN cord-010027-r0tl01kq 660 20 . . . cord-010027-r0tl01kq 661 1 Modulation modulation NN cord-010027-r0tl01kq 661 2 of of IN cord-010027-r0tl01kq 661 3 AEBS AEBS NNP cord-010027-r0tl01kq 661 4 activity activity NN cord-010027-r0tl01kq 661 5 has have VBZ cord-010027-r0tl01kq 661 6 been be VBN cord-010027-r0tl01kq 661 7 proposed propose VBN cord-010027-r0tl01kq 661 8 to to TO cord-010027-r0tl01kq 661 9 be be VB cord-010027-r0tl01kq 661 10 anti anti JJ cord-010027-r0tl01kq 661 11 - - JJ cord-010027-r0tl01kq 661 12 tumourigenic tumourigenic JJ cord-010027-r0tl01kq 661 13 , , , cord-010027-r0tl01kq 661 14 and and CC cord-010027-r0tl01kq 661 15 also also RB cord-010027-r0tl01kq 661 16 is be VBZ cord-010027-r0tl01kq 661 17 implicated implicate VBN cord-010027-r0tl01kq 661 18 as as IN cord-010027-r0tl01kq 661 19 a a DT cord-010027-r0tl01kq 661 20 suppressor suppressor NN cord-010027-r0tl01kq 661 21 of of IN cord-010027-r0tl01kq 661 22 Hedgehog Hedgehog NNP cord-010027-r0tl01kq 661 23 signalling signalling NN cord-010027-r0tl01kq 661 24 . . . cord-010027-r0tl01kq 662 1 Thus thus RB cord-010027-r0tl01kq 662 2 , , , cord-010027-r0tl01kq 662 3 tamoxifen tamoxifen NN cord-010027-r0tl01kq 662 4 impacts impact NNS cord-010027-r0tl01kq 662 5 on on IN cord-010027-r0tl01kq 662 6 multiple multiple JJ cord-010027-r0tl01kq 662 7 pathways pathway NNS cord-010027-r0tl01kq 662 8 to to TO cord-010027-r0tl01kq 662 9 create create VB cord-010027-r0tl01kq 662 10 a a DT cord-010027-r0tl01kq 662 11 tumour tumour NN cord-010027-r0tl01kq 662 12 inhibitory inhibitory JJ cord-010027-r0tl01kq 662 13 phenotype phenotype NN cord-010027-r0tl01kq 662 14 . . . cord-010027-r0tl01kq 663 1 This this DT cord-010027-r0tl01kq 663 2 work work NN cord-010027-r0tl01kq 663 3 was be VBD cord-010027-r0tl01kq 663 4 supported support VBN cord-010027-r0tl01kq 663 5 by by IN cord-010027-r0tl01kq 663 6 the the DT cord-010027-r0tl01kq 663 7 Pathsoc Pathsoc NNP cord-010027-r0tl01kq 663 8 Small Small NNP cord-010027-r0tl01kq 663 9 Grant Grant NNP cord-010027-r0tl01kq 663 10 Scheme Scheme NNP cord-010027-r0tl01kq 663 11 . . . cord-010027-r0tl01kq 664 1 Purpose purpose NN cord-010027-r0tl01kq 664 2 of of IN cord-010027-r0tl01kq 664 3 the the DT cord-010027-r0tl01kq 664 4 Study Study NNP cord-010027-r0tl01kq 664 5 : : : cord-010027-r0tl01kq 664 6 The the DT cord-010027-r0tl01kq 664 7 Phenotypic Phenotypic NNP cord-010027-r0tl01kq 664 8 features feature NNS cord-010027-r0tl01kq 664 9 of of IN cord-010027-r0tl01kq 664 10 basal basal NN cord-010027-r0tl01kq 664 11 like like IN cord-010027-r0tl01kq 664 12 ( ( -LRB- cord-010027-r0tl01kq 664 13 BL bl NN cord-010027-r0tl01kq 664 14 ) ) -RRB- cord-010027-r0tl01kq 664 15 breast breast NN cord-010027-r0tl01kq 664 16 cancer cancer NN cord-010027-r0tl01kq 664 17 ( ( -LRB- cord-010027-r0tl01kq 664 18 BC BC NNP cord-010027-r0tl01kq 664 19 ) ) -RRB- cord-010027-r0tl01kq 664 20 resemble resemble VBP cord-010027-r0tl01kq 664 21 those those DT cord-010027-r0tl01kq 664 22 occurring occur VBG cord-010027-r0tl01kq 664 23 in in IN cord-010027-r0tl01kq 664 24 BRCA1-germline BRCA1-germline NNP cord-010027-r0tl01kq 664 25 mutation mutation NN cord-010027-r0tl01kq 664 26 carriers carrier NNS cord-010027-r0tl01kq 664 27 . . . cord-010027-r0tl01kq 665 1 Several several JJ cord-010027-r0tl01kq 665 2 lines line NNS cord-010027-r0tl01kq 665 3 of of IN cord-010027-r0tl01kq 665 4 evidence evidence NN cord-010027-r0tl01kq 665 5 suggesting suggest VBG cord-010027-r0tl01kq 665 6 the the DT cord-010027-r0tl01kq 665 7 overall overall JJ cord-010027-r0tl01kq 665 8 tendency tendency NN cord-010027-r0tl01kq 665 9 of of IN cord-010027-r0tl01kq 665 10 basal basal NN cord-010027-r0tl01kq 665 11 - - HYPH cord-010027-r0tl01kq 665 12 like like JJ cord-010027-r0tl01kq 665 13 / / SYM cord-010027-r0tl01kq 665 14 triple triple JJ cord-010027-r0tl01kq 665 15 negative negative JJ cord-010027-r0tl01kq 665 16 BC BC NNP cord-010027-r0tl01kq 665 17 to to TO cord-010027-r0tl01kq 665 18 spread spread VB cord-010027-r0tl01kq 665 19 through through IN cord-010027-r0tl01kq 665 20 vascular vascular JJ cord-010027-r0tl01kq 665 21 rather rather RB cord-010027-r0tl01kq 665 22 than than IN cord-010027-r0tl01kq 665 23 lymphatic lymphatic JJ cord-010027-r0tl01kq 665 24 routes route NNS cord-010027-r0tl01kq 665 25 . . . cord-010027-r0tl01kq 666 1 The the DT cord-010027-r0tl01kq 666 2 latter latter NN cord-010027-r0tl01kq 666 3 has have VBZ cord-010027-r0tl01kq 666 4 recently recently RB cord-010027-r0tl01kq 666 5 been be VBN cord-010027-r0tl01kq 666 6 attributed attribute VBN cord-010027-r0tl01kq 666 7 to to IN cord-010027-r0tl01kq 666 8 the the DT cord-010027-r0tl01kq 666 9 activation activation NN cord-010027-r0tl01kq 666 10 of of IN cord-010027-r0tl01kq 666 11 cadherin cadherin NN cord-010027-r0tl01kq 666 12 switch switch NN cord-010027-r0tl01kq 666 13 , , , cord-010027-r0tl01kq 666 14 an an DT cord-010027-r0tl01kq 666 15 EMT EMT NNP cord-010027-r0tl01kq 666 16 - - HYPH cord-010027-r0tl01kq 666 17 like like JJ cord-010027-r0tl01kq 666 18 phenomenon phenomenon NN cord-010027-r0tl01kq 666 19 , , , cord-010027-r0tl01kq 666 20 in in IN cord-010027-r0tl01kq 666 21 BLBC BLBC NNP cord-010027-r0tl01kq 666 22 . . . cord-010027-r0tl01kq 667 1 This this DT cord-010027-r0tl01kq 667 2 study study NN cord-010027-r0tl01kq 667 3 aims aim VBZ cord-010027-r0tl01kq 667 4 at at IN cord-010027-r0tl01kq 667 5 studying study VBG cord-010027-r0tl01kq 667 6 the the DT cord-010027-r0tl01kq 667 7 cadherin cadherin NN cord-010027-r0tl01kq 667 8 switch switch NN cord-010027-r0tl01kq 667 9 expression expression NN cord-010027-r0tl01kq 667 10 profile profile NN cord-010027-r0tl01kq 667 11 TGFB1 TGFB1 NNP cord-010027-r0tl01kq 667 12 , , , cord-010027-r0tl01kq 667 13 a a DT cord-010027-r0tl01kq 667 14 key key JJ cord-010027-r0tl01kq 667 15 EMT EMT NNP cord-010027-r0tl01kq 667 16 - - HYPH cord-010027-r0tl01kq 667 17 trigger trigger NN cord-010027-r0tl01kq 667 18 , , , cord-010027-r0tl01kq 667 19 expression expression NN cord-010027-r0tl01kq 667 20 in in IN cord-010027-r0tl01kq 667 21 BRCA1 BRCA1 NNP cord-010027-r0tl01kq 667 22 mutated mutate VBN cord-010027-r0tl01kq 667 23 compared compare VBN cord-010027-r0tl01kq 667 24 to to IN cord-010027-r0tl01kq 667 25 sporadic sporadic JJ cord-010027-r0tl01kq 667 26 BC BC NNP cord-010027-r0tl01kq 667 27 . . . cord-010027-r0tl01kq 668 1 The the DT cord-010027-r0tl01kq 668 2 expression expression NN cord-010027-r0tl01kq 668 3 of of IN cord-010027-r0tl01kq 668 4 E e NN cord-010027-r0tl01kq 668 5 - - NN cord-010027-r0tl01kq 668 6 cadherin cadherin NN cord-010027-r0tl01kq 668 7 , , , cord-010027-r0tl01kq 668 8 N n CD cord-010027-r0tl01kq 668 9 - - HYPH cord-010027-r0tl01kq 668 10 cadherin cadherin NN cord-010027-r0tl01kq 668 11 and and CC cord-010027-r0tl01kq 668 12 TGFB1 TGFB1 NNP cord-010027-r0tl01kq 668 13 were be VBD cord-010027-r0tl01kq 668 14 studied study VBN cord-010027-r0tl01kq 668 15 in in IN cord-010027-r0tl01kq 668 16 a a DT cord-010027-r0tl01kq 668 17 subset subset NN cord-010027-r0tl01kq 668 18 of of IN cord-010027-r0tl01kq 668 19 germline germline JJ cord-010027-r0tl01kq 668 20 BRCA1 BRCA1 NNP cord-010027-r0tl01kq 668 21 mutated mutate VBN cord-010027-r0tl01kq 668 22 BC BC NNP cord-010027-r0tl01kq 668 23 ( ( -LRB- cord-010027-r0tl01kq 668 24 n= n= NNP cord-010027-r0tl01kq 668 25 47 47 CD cord-010027-r0tl01kq 668 26 ) ) -RRB- cord-010027-r0tl01kq 668 27 compared compare VBN cord-010027-r0tl01kq 668 28 to to IN cord-010027-r0tl01kq 668 29 non non JJ cord-010027-r0tl01kq 668 30 - - JJ cord-010027-r0tl01kq 668 31 selected selected JJ cord-010027-r0tl01kq 668 32 cohorts cohort NNS cord-010027-r0tl01kq 668 33 of of IN cord-010027-r0tl01kq 668 34 non non JJ cord-010027-r0tl01kq 668 35 - - JJ cord-010027-r0tl01kq 668 36 lobular lobular JJ cord-010027-r0tl01kq 668 37 sporadic sporadic JJ cord-010027-r0tl01kq 668 38 invasive invasive JJ cord-010027-r0tl01kq 668 39 BLBC BLBC NNP cord-010027-r0tl01kq 669 1 ( ( -LRB- cord-010027-r0tl01kq 669 2 n= n= NNP cord-010027-r0tl01kq 669 3 422 422 CD cord-010027-r0tl01kq 669 4 ) ) -RRB- cord-010027-r0tl01kq 669 5 and and CC cord-010027-r0tl01kq 669 6 non non JJ cord-010027-r0tl01kq 669 7 - - JJ cord-010027-r0tl01kq 669 8 basal basal JJ cord-010027-r0tl01kq 669 9 BC BC NNP cord-010027-r0tl01kq 669 10 ( ( -LRB- cord-010027-r0tl01kq 669 11 n=1190 n=1190 CD cord-010027-r0tl01kq 669 12 ) ) -RRB- cord-010027-r0tl01kq 670 1 using use VBG cord-010027-r0tl01kq 670 2 IHC IHC NNP cord-010027-r0tl01kq 670 3 and and CC cord-010027-r0tl01kq 670 4 TMA TMA NNP cord-010027-r0tl01kq 670 5 . . . cord-010027-r0tl01kq 671 1 Summary summary NN cord-010027-r0tl01kq 671 2 of of IN cord-010027-r0tl01kq 671 3 results result NNS cord-010027-r0tl01kq 671 4 : : : cord-010027-r0tl01kq 672 1 Compared compare VBN cord-010027-r0tl01kq 672 2 to to IN cord-010027-r0tl01kq 672 3 sporadic sporadic JJ cord-010027-r0tl01kq 672 4 BC BC NNP cord-010027-r0tl01kq 672 5 , , , cord-010027-r0tl01kq 672 6 BRCA1 BRCA1 NNP cord-010027-r0tl01kq 672 7 mutated mutate VBN cord-010027-r0tl01kq 672 8 cases case NNS cord-010027-r0tl01kq 672 9 were be VBD cord-010027-r0tl01kq 672 10 of of IN cord-010027-r0tl01kq 672 11 younger young JJR cord-010027-r0tl01kq 672 12 age age NN cord-010027-r0tl01kq 672 13 , , , cord-010027-r0tl01kq 672 14 more more JJR cord-010027-r0tl01kq 672 15 grade grade NN cord-010027-r0tl01kq 672 16 3 3 CD cord-010027-r0tl01kq 672 17 , , , cord-010027-r0tl01kq 672 18 with with IN cord-010027-r0tl01kq 672 19 more more JJR cord-010027-r0tl01kq 672 20 medullary medullary JJ cord-010027-r0tl01kq 672 21 - - HYPH cord-010027-r0tl01kq 672 22 like like JJ cord-010027-r0tl01kq 672 23 tumours tumour NNS cord-010027-r0tl01kq 672 24 , , , cord-010027-r0tl01kq 672 25 and and CC cord-010027-r0tl01kq 672 26 more more JJR cord-010027-r0tl01kq 672 27 LVI LVI NNP cord-010027-r0tl01kq 672 28 positive positive JJ cord-010027-r0tl01kq 672 29 . . . cord-010027-r0tl01kq 673 1 E E NNP cord-010027-r0tl01kq 673 2 - - NN cord-010027-r0tl01kq 673 3 cad cad NNP cord-010027-r0tl01kq 673 4 was be VBD cord-010027-r0tl01kq 673 5 significantly significantly RB cord-010027-r0tl01kq 673 6 less less RBR cord-010027-r0tl01kq 673 7 expressed express VBN cord-010027-r0tl01kq 673 8 in in IN cord-010027-r0tl01kq 673 9 BRCA1 BRCA1 NNP cord-010027-r0tl01kq 673 10 cases case NNS cord-010027-r0tl01kq 673 11 than than IN cord-010027-r0tl01kq 673 12 in in IN cord-010027-r0tl01kq 673 13 the the DT cord-010027-r0tl01kq 673 14 sporadic sporadic JJ cord-010027-r0tl01kq 673 15 non non JJ cord-010027-r0tl01kq 673 16 - - JJ cord-010027-r0tl01kq 673 17 basal basal JJ cord-010027-r0tl01kq 673 18 and and CC cord-010027-r0tl01kq 673 19 in in IN cord-010027-r0tl01kq 673 20 the the DT cord-010027-r0tl01kq 673 21 BLBC BLBC NNP cord-010027-r0tl01kq 673 22 . . . cord-010027-r0tl01kq 674 1 However however RB cord-010027-r0tl01kq 674 2 , , , cord-010027-r0tl01kq 674 3 N N NNP cord-010027-r0tl01kq 674 4 - - HYPH cord-010027-r0tl01kq 674 5 cad cad NNP cord-010027-r0tl01kq 674 6 was be VBD cord-010027-r0tl01kq 674 7 not not RB cord-010027-r0tl01kq 674 8 significantly significantly RB cord-010027-r0tl01kq 674 9 expressed express VBN cord-010027-r0tl01kq 674 10 in in IN cord-010027-r0tl01kq 674 11 BRCA1 BRCA1 NNP cord-010027-r0tl01kq 674 12 , , , cord-010027-r0tl01kq 674 13 non non JJ cord-010027-r0tl01kq 674 14 - - JJ cord-010027-r0tl01kq 674 15 basal basal JJ cord-010027-r0tl01kq 674 16 , , , cord-010027-r0tl01kq 674 17 and and CC cord-010027-r0tl01kq 674 18 BLBC BLBC NNP cord-010027-r0tl01kq 674 19 . . . cord-010027-r0tl01kq 675 1 TGFB1 TGFB1 NNP cord-010027-r0tl01kq 675 2 was be VBD cord-010027-r0tl01kq 675 3 significantly significantly RB cord-010027-r0tl01kq 675 4 less less RBR cord-010027-r0tl01kq 675 5 expressed express VBN cord-010027-r0tl01kq 675 6 in in IN cord-010027-r0tl01kq 675 7 sporadic sporadic JJ cord-010027-r0tl01kq 675 8 BC BC NNP cord-010027-r0tl01kq 675 9 , , , cord-010027-r0tl01kq 675 10 both both CC cord-010027-r0tl01kq 675 11 non non JJ cord-010027-r0tl01kq 675 12 - - JJ cord-010027-r0tl01kq 675 13 basal basal JJ cord-010027-r0tl01kq 675 14 BLBC BLBC NNP cord-010027-r0tl01kq 675 15 than than IN cord-010027-r0tl01kq 675 16 BRCA1 BRCA1 NNP cord-010027-r0tl01kq 675 17 mutated mutate VBN cord-010027-r0tl01kq 675 18 BC BC NNP cord-010027-r0tl01kq 675 19 . . . cord-010027-r0tl01kq 676 1 E e JJ cord-010027-r0tl01kq 676 2 - - JJ cord-010027-r0tl01kq 676 3 cad cad NNP cord-010027-r0tl01kq 676 4 / / SYM cord-010027-r0tl01kq 676 5 N N NNP cord-010027-r0tl01kq 676 6 - - HYPH cord-010027-r0tl01kq 676 7 cad cad JJ cord-010027-r0tl01kq 676 8 combinatorial combinatorial JJ cord-010027-r0tl01kq 676 9 expression expression NN cord-010027-r0tl01kq 676 10 phenotypes phenotype NNS cord-010027-r0tl01kq 676 11 were be VBD cord-010027-r0tl01kq 676 12 significantly significantly RB cord-010027-r0tl01kq 676 13 different different JJ cord-010027-r0tl01kq 676 14 between between IN cord-010027-r0tl01kq 676 15 BRCA1 BRCA1 NNP cord-010027-r0tl01kq 676 16 mutated mutate VBN cord-010027-r0tl01kq 676 17 and and CC cord-010027-r0tl01kq 676 18 non non JJ cord-010027-r0tl01kq 676 19 - - JJ cord-010027-r0tl01kq 676 20 basal basal JJ cord-010027-r0tl01kq 676 21 and and CC cord-010027-r0tl01kq 676 22 BLBC BLBC NNP cord-010027-r0tl01kq 676 23 . . . cord-010027-r0tl01kq 677 1 Higher high JJR cord-010027-r0tl01kq 677 2 proportions proportion NNS cord-010027-r0tl01kq 677 3 E e NN cord-010027-r0tl01kq 677 4 - - NN cord-010027-r0tl01kq 677 5 cad-/N cad-/n NN cord-010027-r0tl01kq 677 6 - - : cord-010027-r0tl01kq 677 7 cad+ cad+ NNP cord-010027-r0tl01kq 677 8 were be VBD cord-010027-r0tl01kq 677 9 significantly significantly RB cord-010027-r0tl01kq 677 10 observed observe VBN cord-010027-r0tl01kq 677 11 BLBC BLBC NNP cord-010027-r0tl01kq 677 12 than than IN cord-010027-r0tl01kq 677 13 non non JJ cord-010027-r0tl01kq 677 14 - - JJ cord-010027-r0tl01kq 677 15 basal basal JJ cord-010027-r0tl01kq 677 16 BC BC NNP cord-010027-r0tl01kq 677 17 . . . cord-010027-r0tl01kq 678 1 BRCA1 BRCA1 NNP cord-010027-r0tl01kq 678 2 mutated mutate VBN cord-010027-r0tl01kq 678 3 cases case NNS cord-010027-r0tl01kq 678 4 displayed display VBD cord-010027-r0tl01kq 678 5 the the DT cord-010027-r0tl01kq 678 6 least least JJS cord-010027-r0tl01kq 678 7 E e NN cord-010027-r0tl01kq 678 8 - - HYPH cord-010027-r0tl01kq 678 9 cad+ cad+ JJ cord-010027-r0tl01kq 678 10 expression expression NN cord-010027-r0tl01kq 678 11 and and CC cord-010027-r0tl01kq 678 12 the the DT cord-010027-r0tl01kq 678 13 highest high JJS cord-010027-r0tl01kq 678 14 E e NN cord-010027-r0tl01kq 678 15 - - NN cord-010027-r0tl01kq 678 16 cad-/N cad-/n NN cord-010027-r0tl01kq 678 17 - - : cord-010027-r0tl01kq 678 18 cad+ cad+ NNP cord-010027-r0tl01kq 678 19 in in IN cord-010027-r0tl01kq 678 20 the the DT cord-010027-r0tl01kq 678 21 studied study VBN cord-010027-r0tl01kq 678 22 series series NN cord-010027-r0tl01kq 678 23 . . . cord-010027-r0tl01kq 679 1 Conclusions conclusion NNS cord-010027-r0tl01kq 679 2 : : : cord-010027-r0tl01kq 680 1 Despite despite IN cord-010027-r0tl01kq 680 2 the the DT cord-010027-r0tl01kq 680 3 known know VBN cord-010027-r0tl01kq 680 4 similarities similarity NNS cord-010027-r0tl01kq 680 5 between between IN cord-010027-r0tl01kq 680 6 BRCA BRCA NNP cord-010027-r0tl01kq 680 7 mutated mutate VBN cord-010027-r0tl01kq 680 8 and and CC cord-010027-r0tl01kq 680 9 BLBC BLBC NNP cord-010027-r0tl01kq 680 10 , , , cord-010027-r0tl01kq 680 11 results result NNS cord-010027-r0tl01kq 680 12 of of IN cord-010027-r0tl01kq 680 13 this this DT cord-010027-r0tl01kq 680 14 study study NN cord-010027-r0tl01kq 680 15 demonstrate demonstrate VBP cord-010027-r0tl01kq 680 16 the the DT cord-010027-r0tl01kq 680 17 more more JJR cord-010027-r0tl01kq 680 18 occurrence occurrence NN cord-010027-r0tl01kq 680 19 of of IN cord-010027-r0tl01kq 680 20 cadherin cadherin NN cord-010027-r0tl01kq 680 21 switch switch NN cord-010027-r0tl01kq 680 22 in in IN cord-010027-r0tl01kq 680 23 BRCA1 BRCA1 NNP cord-010027-r0tl01kq 680 24 mutated mutate VBN cord-010027-r0tl01kq 680 25 breast breast NN cord-010027-r0tl01kq 680 26 cancer cancer NN cord-010027-r0tl01kq 680 27 . . . cord-010027-r0tl01kq 681 1 E e JJ cord-010027-r0tl01kq 681 2 - - JJ cord-010027-r0tl01kq 681 3 cad cad JJ cord-010027-r0tl01kq 681 4 repression repression NN cord-010027-r0tl01kq 681 5 appears appear VBZ cord-010027-r0tl01kq 681 6 to to TO cord-010027-r0tl01kq 681 7 contribute contribute VB cord-010027-r0tl01kq 681 8 more more JJR cord-010027-r0tl01kq 681 9 than than IN cord-010027-r0tl01kq 681 10 N n CD cord-010027-r0tl01kq 681 11 - - HYPH cord-010027-r0tl01kq 681 12 cad cad NN cord-010027-r0tl01kq 681 13 gain gain NN cord-010027-r0tl01kq 681 14 in in IN cord-010027-r0tl01kq 681 15 BLBC BLBC NNP cord-010027-r0tl01kq 681 16 than than IN cord-010027-r0tl01kq 681 17 non non JJ cord-010027-r0tl01kq 681 18 - - JJ cord-010027-r0tl01kq 681 19 basal basal JJ cord-010027-r0tl01kq 681 20 BC BC NNP cord-010027-r0tl01kq 681 21 . . . cord-010027-r0tl01kq 682 1 Exploring explore VBG cord-010027-r0tl01kq 682 2 Molecular Molecular NNP cord-010027-r0tl01kq 682 3 Mechanisms Mechanisms NNPS cord-010027-r0tl01kq 682 4 Underlying Underlying NNP cord-010027-r0tl01kq 682 5 Lymphovascular Lymphovascular NNP cord-010027-r0tl01kq 682 6 Invasion Invasion NNP cord-010027-r0tl01kq 682 7 in in IN cord-010027-r0tl01kq 682 8 Breast Breast NNP cord-010027-r0tl01kq 682 9 Cancer Cancer NNP cord-010027-r0tl01kq 682 10 P p NN cord-010027-r0tl01kq 682 11 SN SN NNP cord-010027-r0tl01kq 682 12 Sonbul Sonbul NNP cord-010027-r0tl01kq 682 13 1 1 CD cord-010027-r0tl01kq 682 14 ; ; : cord-010027-r0tl01kq 682 15 A a DT cord-010027-r0tl01kq 682 16 Mukherjee Mukherjee NNP cord-010027-r0tl01kq 682 17 1 1 CD cord-010027-r0tl01kq 682 18 ; ; : cord-010027-r0tl01kq 682 19 R R NNP cord-010027-r0tl01kq 682 20 Russell Russell NNP cord-010027-r0tl01kq 682 21 2 2 CD cord-010027-r0tl01kq 682 22 ; ; : cord-010027-r0tl01kq 682 23 OM OM NNP cord-010027-r0tl01kq 682 24 Rueda Rueda NNP cord-010027-r0tl01kq 682 25 2 2 CD cord-010027-r0tl01kq 682 26 ; ; : cord-010027-r0tl01kq 682 27 M M NNP cord-010027-r0tl01kq 682 28 Aleskandarany Aleskandarany NNP cord-010027-r0tl01kq 682 29 1 1 CD cord-010027-r0tl01kq 682 30 ; ; : cord-010027-r0tl01kq 682 31 AR AR NNP cord-010027-r0tl01kq 682 32 Green Green NNP cord-010027-r0tl01kq 682 33 1 1 CD cord-010027-r0tl01kq 682 34 ; ; : cord-010027-r0tl01kq 682 35 E E NNP cord-010027-r0tl01kq 682 36 Provenzano Provenzano NNP cord-010027-r0tl01kq 682 37 3 3 CD cord-010027-r0tl01kq 682 38 ; ; : cord-010027-r0tl01kq 682 39 C C NNP cord-010027-r0tl01kq 682 40 Caldas Caldas NNP cord-010027-r0tl01kq 682 41 3 3 CD cord-010027-r0tl01kq 682 42 ; ; : cord-010027-r0tl01kq 682 43 IO IO NNP cord-010027-r0tl01kq 682 44 Ellis Ellis NNP cord-010027-r0tl01kq 682 45 1 1 CD cord-010027-r0tl01kq 682 46 ; ; : cord-010027-r0tl01kq 682 47 EA EA NNP cord-010027-r0tl01kq 682 48 Rakha Rakha NNP cord-010027-r0tl01kq 682 49 1 1 CD cord-010027-r0tl01kq 683 1 The the DT cord-010027-r0tl01kq 683 2 development development NN cord-010027-r0tl01kq 683 3 of of IN cord-010027-r0tl01kq 683 4 tamoxifen tamoxifen NN cord-010027-r0tl01kq 683 5 resistance resistance NN cord-010027-r0tl01kq 683 6 ( ( -LRB- cord-010027-r0tl01kq 683 7 TR TR NNP cord-010027-r0tl01kq 683 8 ) ) -RRB- cord-010027-r0tl01kq 683 9 in in IN cord-010027-r0tl01kq 683 10 oestrogen oestrogen NN cord-010027-r0tl01kq 683 11 - - HYPH cord-010027-r0tl01kq 683 12 dependent dependent JJ cord-010027-r0tl01kq 683 13 breast breast NN cord-010027-r0tl01kq 683 14 cancer cancer NN cord-010027-r0tl01kq 683 15 ( ( -LRB- cord-010027-r0tl01kq 683 16 BC BC NNP cord-010027-r0tl01kq 683 17 ) ) -RRB- cord-010027-r0tl01kq 683 18 is be VBZ cord-010027-r0tl01kq 683 19 a a DT cord-010027-r0tl01kq 683 20 therapeutic therapeutic JJ cord-010027-r0tl01kq 683 21 challenge challenge NN cord-010027-r0tl01kq 683 22 . . . cord-010027-r0tl01kq 684 1 Insulin insulin NN cord-010027-r0tl01kq 684 2 - - HYPH cord-010027-r0tl01kq 684 3 like like JJ cord-010027-r0tl01kq 684 4 growth growth NN cord-010027-r0tl01kq 684 5 factor factor NN cord-010027-r0tl01kq 684 6 binding bind VBG cord-010027-r0tl01kq 684 7 proteins protein NNS cord-010027-r0tl01kq 684 8 ( ( -LRB- cord-010027-r0tl01kq 684 9 IGFBPs igfbp NNS cord-010027-r0tl01kq 684 10 ) ) -RRB- cord-010027-r0tl01kq 684 11 may may MD cord-010027-r0tl01kq 684 12 play play VB cord-010027-r0tl01kq 684 13 a a DT cord-010027-r0tl01kq 684 14 role role NN cord-010027-r0tl01kq 684 15 in in IN cord-010027-r0tl01kq 684 16 this this DT cord-010027-r0tl01kq 684 17 process process NN cord-010027-r0tl01kq 684 18 . . . cord-010027-r0tl01kq 685 1 We -PRON- PRP cord-010027-r0tl01kq 685 2 have have VBP cord-010027-r0tl01kq 685 3 investigated investigate VBN cord-010027-r0tl01kq 685 4 the the DT cord-010027-r0tl01kq 685 5 role role NN cord-010027-r0tl01kq 685 6 of of IN cord-010027-r0tl01kq 685 7 IGFBP IGFBP NNP cord-010027-r0tl01kq 685 8 proteins protein NNS cord-010027-r0tl01kq 685 9 in in IN cord-010027-r0tl01kq 685 10 TR TR NNP cord-010027-r0tl01kq 685 11 BC BC NNP cord-010027-r0tl01kq 685 12 . . . cord-010027-r0tl01kq 686 1 IGF IGF NNP cord-010027-r0tl01kq 686 2 axis axis NN cord-010027-r0tl01kq 686 3 genes gene NNS cord-010027-r0tl01kq 686 4 were be VBD cord-010027-r0tl01kq 686 5 evaluated evaluate VBN cord-010027-r0tl01kq 686 6 in in IN cord-010027-r0tl01kq 686 7 MCF-7 MCF-7 NNP cord-010027-r0tl01kq 686 8 ( ( -LRB- cord-010027-r0tl01kq 686 9 wt wt NN cord-010027-r0tl01kq 686 10 ) ) -RRB- cord-010027-r0tl01kq 686 11 cells cell NNS cord-010027-r0tl01kq 686 12 and and CC cord-010027-r0tl01kq 686 13 tamoxifen tamoxifen NN cord-010027-r0tl01kq 686 14 - - HYPH cord-010027-r0tl01kq 686 15 resistant resistant JJ cord-010027-r0tl01kq 686 16 ( ( -LRB- cord-010027-r0tl01kq 686 17 TamR tamr NN cord-010027-r0tl01kq 686 18 ) ) -RRB- cord-010027-r0tl01kq 686 19 variants variant NNS cord-010027-r0tl01kq 686 20 using use VBG cord-010027-r0tl01kq 686 21 qRT qrt ADD cord-010027-r0tl01kq 686 22 - - HYPH cord-010027-r0tl01kq 686 23 PCR PCR NNP cord-010027-r0tl01kq 686 24 and and CC cord-010027-r0tl01kq 686 25 confirmed confirm VBN cord-010027-r0tl01kq 686 26 by by IN cord-010027-r0tl01kq 686 27 ELISA ELISA NNP cord-010027-r0tl01kq 686 28 , , , cord-010027-r0tl01kq 686 29 Western Western NNP cord-010027-r0tl01kq 686 30 , , , cord-010027-r0tl01kq 686 31 and and CC cord-010027-r0tl01kq 686 32 Ligand Ligand NNP cord-010027-r0tl01kq 686 33 blotting blotting NN cord-010027-r0tl01kq 686 34 . . . cord-010027-r0tl01kq 687 1 IGFBP-2 IGFBP-2 NNP cord-010027-r0tl01kq 687 2 & & CC cord-010027-r0tl01kq 687 3 -5 -5 NNP cord-010027-r0tl01kq 687 4 were be VBD cord-010027-r0tl01kq 687 5 knocked knock VBN cord-010027-r0tl01kq 687 6 down down RP cord-010027-r0tl01kq 687 7 by by IN cord-010027-r0tl01kq 687 8 shRNA shrna NN cord-010027-r0tl01kq 687 9 transfection transfection NN cord-010027-r0tl01kq 687 10 , , , cord-010027-r0tl01kq 687 11 and and CC cord-010027-r0tl01kq 687 12 subsequent subsequent JJ cord-010027-r0tl01kq 687 13 sensitivity sensitivity NN cord-010027-r0tl01kq 687 14 to to IN cord-010027-r0tl01kq 687 15 4-hydroxytamoxifen 4-hydroxytamoxifen CD cord-010027-r0tl01kq 687 16 ( ( -LRB- cord-010027-r0tl01kq 687 17 4-HT 4-ht CD cord-010027-r0tl01kq 687 18 ) ) -RRB- cord-010027-r0tl01kq 687 19 was be VBD cord-010027-r0tl01kq 687 20 determined determine VBN cord-010027-r0tl01kq 687 21 via via IN cord-010027-r0tl01kq 687 22 WST-1 WST-1 NNP cord-010027-r0tl01kq 687 23 . . . cord-010027-r0tl01kq 688 1 Cell cell NN cord-010027-r0tl01kq 688 2 migration migration NN cord-010027-r0tl01kq 688 3 was be VBD cord-010027-r0tl01kq 688 4 investigated investigate VBN cord-010027-r0tl01kq 688 5 by by IN cord-010027-r0tl01kq 688 6 using use VBG cord-010027-r0tl01kq 688 7 the the DT cord-010027-r0tl01kq 688 8 Incucyte Incucyte NNP cord-010027-r0tl01kq 688 9 system system NN cord-010027-r0tl01kq 688 10 . . . cord-010027-r0tl01kq 689 1 IGFBP-2 igfbp-2 JJ cord-010027-r0tl01kq 689 2 expression expression NN cord-010027-r0tl01kq 689 3 was be VBD cord-010027-r0tl01kq 689 4 evaluated evaluate VBN cord-010027-r0tl01kq 689 5 in in IN cord-010027-r0tl01kq 689 6 424 424 CD cord-010027-r0tl01kq 689 7 BC BC NNP cord-010027-r0tl01kq 689 8 cases case NNS cord-010027-r0tl01kq 689 9 by by IN cord-010027-r0tl01kq 689 10 TMA TMA NNP cord-010027-r0tl01kq 689 11 immunohistochemistry immunohistochemistry NN cord-010027-r0tl01kq 689 12 . . . cord-010027-r0tl01kq 690 1 Five five CD cord-010027-r0tl01kq 690 2 out out IN cord-010027-r0tl01kq 690 3 of of IN cord-010027-r0tl01kq 690 4 10 10 CD cord-010027-r0tl01kq 690 5 genes gene NNS cord-010027-r0tl01kq 690 6 of of IN cord-010027-r0tl01kq 690 7 the the DT cord-010027-r0tl01kq 690 8 IGF IGF NNP cord-010027-r0tl01kq 690 9 axis axis NN cord-010027-r0tl01kq 690 10 ( ( -LRB- cord-010027-r0tl01kq 690 11 IGF IGF NNP cord-010027-r0tl01kq 690 12 - - HYPH cord-010027-r0tl01kq 690 13 IR IR NNP cord-010027-r0tl01kq 690 14 , , , cord-010027-r0tl01kq 690 15 IGF-2R IGF-2R NNP cord-010027-r0tl01kq 690 16 , , , cord-010027-r0tl01kq 690 17 IGFBP-2 IGFBP-2 NNP cord-010027-r0tl01kq 690 18 , , , cord-010027-r0tl01kq 690 19 -4 -4 NNP cord-010027-r0tl01kq 690 20 and and CC cord-010027-r0tl01kq 690 21 -5 -5 NNP cord-010027-r0tl01kq 690 22 ) ) -RRB- cord-010027-r0tl01kq 690 23 had have VBD cord-010027-r0tl01kq 690 24 the the DT cord-010027-r0tl01kq 690 25 highest high JJS cord-010027-r0tl01kq 690 26 expression expression NN cord-010027-r0tl01kq 690 27 levels level NNS cord-010027-r0tl01kq 690 28 by by IN cord-010027-r0tl01kq 690 29 both both DT cord-010027-r0tl01kq 690 30 parental parental JJ cord-010027-r0tl01kq 690 31 wt wt NN cord-010027-r0tl01kq 690 32 and and CC cord-010027-r0tl01kq 690 33 TamR TamR NNP cord-010027-r0tl01kq 690 34 cells cell NNS cord-010027-r0tl01kq 690 35 . . . cord-010027-r0tl01kq 691 1 IGFBP-5 IGFBP-5 NNP cord-010027-r0tl01kq 691 2 was be VBD cord-010027-r0tl01kq 691 3 down down RB cord-010027-r0tl01kq 691 4 - - HYPH cord-010027-r0tl01kq 691 5 regulated regulate VBN cord-010027-r0tl01kq 691 6 by by IN cord-010027-r0tl01kq 691 7 ~7-fold ~7-fold NNP cord-010027-r0tl01kq 691 8 while while IN cord-010027-r0tl01kq 691 9 IGFBP-2 IGFBP-2 NNP cord-010027-r0tl01kq 691 10 was be VBD cord-010027-r0tl01kq 691 11 up up RB cord-010027-r0tl01kq 691 12 - - HYPH cord-010027-r0tl01kq 691 13 regulated regulate VBN cord-010027-r0tl01kq 691 14 by by IN cord-010027-r0tl01kq 692 1 ~2-fold ~2-fold NNP cord-010027-r0tl01kq 693 1 in in IN cord-010027-r0tl01kq 693 2 TamR TamR NNP cord-010027-r0tl01kq 693 3 versus versus IN cord-010027-r0tl01kq 693 4 wt wt NN cord-010027-r0tl01kq 693 5 cells cell NNS cord-010027-r0tl01kq 693 6 ( ( -LRB- cord-010027-r0tl01kq 693 7 mRNA mrna NN cord-010027-r0tl01kq 693 8 and and CC cord-010027-r0tl01kq 693 9 protein protein NN cord-010027-r0tl01kq 693 10 levels level NNS cord-010027-r0tl01kq 693 11 ) ) -RRB- cord-010027-r0tl01kq 693 12 . . . cord-010027-r0tl01kq 694 1 Significantly significantly RB cord-010027-r0tl01kq 694 2 , , , cord-010027-r0tl01kq 694 3 a a DT cord-010027-r0tl01kq 694 4 knockdown knockdown NN cord-010027-r0tl01kq 694 5 of of IN cord-010027-r0tl01kq 694 6 IGFBP-2 IGFBP-2 NNP cord-010027-r0tl01kq 694 7 in in IN cord-010027-r0tl01kq 694 8 TamR TamR NNP cord-010027-r0tl01kq 694 9 cells cell NNS cord-010027-r0tl01kq 694 10 restored restore VBD cord-010027-r0tl01kq 694 11 sensitivity sensitivity NN cord-010027-r0tl01kq 694 12 to to IN cord-010027-r0tl01kq 694 13 ( ( -LRB- cord-010027-r0tl01kq 694 14 4-HT 4-ht CD cord-010027-r0tl01kq 694 15 ) ) -RRB- cord-010027-r0tl01kq 694 16 , , , cord-010027-r0tl01kq 694 17 reduced reduce VBN cord-010027-r0tl01kq 694 18 ERα ERα NNS cord-010027-r0tl01kq 694 19 expression expression NN cord-010027-r0tl01kq 694 20 to to IN cord-010027-r0tl01kq 694 21 45 45 CD cord-010027-r0tl01kq 694 22 ± ± CD cord-010027-r0tl01kq 694 23 11.9 11.9 CD cord-010027-r0tl01kq 694 24 % % NN cord-010027-r0tl01kq 694 25 and and CC cord-010027-r0tl01kq 694 26 enhanced enhanced JJ cord-010027-r0tl01kq 694 27 cell cell NN cord-010027-r0tl01kq 694 28 migration migration NN cord-010027-r0tl01kq 694 29 . . . cord-010027-r0tl01kq 695 1 Expression expression NN cord-010027-r0tl01kq 695 2 of of IN cord-010027-r0tl01kq 695 3 IGFBP-2 IGFBP-2 NNP cord-010027-r0tl01kq 695 4 was be VBD cord-010027-r0tl01kq 695 5 significantly significantly RB cord-010027-r0tl01kq 695 6 ( ( -LRB- cord-010027-r0tl01kq 695 7 P p NN cord-010027-r0tl01kq 695 8 < < XX cord-010027-r0tl01kq 695 9 0.001 0.001 CD cord-010027-r0tl01kq 695 10 ) ) -RRB- cord-010027-r0tl01kq 695 11 associated associate VBN cord-010027-r0tl01kq 695 12 with with IN cord-010027-r0tl01kq 695 13 survival survival NN cord-010027-r0tl01kq 695 14 advantage advantage NN cord-010027-r0tl01kq 695 15 in in IN cord-010027-r0tl01kq 695 16 TR tr NN cord-010027-r0tl01kq 695 17 patients patient NNS cord-010027-r0tl01kq 695 18 . . . cord-010027-r0tl01kq 696 1 IGFBP-2 IGFBP-2 NNP cord-010027-r0tl01kq 696 2 and and CC cord-010027-r0tl01kq 696 3 IGFPB-5 IGFPB-5 NNPS cord-010027-r0tl01kq 696 4 are be VBP cord-010027-r0tl01kq 696 5 reciprocally reciprocally RB cord-010027-r0tl01kq 696 6 regulated regulate VBN cord-010027-r0tl01kq 696 7 in in IN cord-010027-r0tl01kq 696 8 the the DT cord-010027-r0tl01kq 696 9 acquisition acquisition NN cord-010027-r0tl01kq 696 10 of of IN cord-010027-r0tl01kq 696 11 TR TR NNP cord-010027-r0tl01kq 696 12 by by IN cord-010027-r0tl01kq 696 13 MCF-7 MCF-7 NNP cord-010027-r0tl01kq 696 14 cells cell NNS cord-010027-r0tl01kq 696 15 . . . cord-010027-r0tl01kq 697 1 IGFBP-2 IGFBP-2 NNP cord-010027-r0tl01kq 697 2 may may MD cord-010027-r0tl01kq 697 3 play play VB cord-010027-r0tl01kq 697 4 a a DT cord-010027-r0tl01kq 697 5 role role NN cord-010027-r0tl01kq 697 6 in in IN cord-010027-r0tl01kq 697 7 the the DT cord-010027-r0tl01kq 697 8 development development NN cord-010027-r0tl01kq 697 9 of of IN cord-010027-r0tl01kq 697 10 TR TR NNP cord-010027-r0tl01kq 697 11 in in IN cord-010027-r0tl01kq 697 12 vitro vitro FW cord-010027-r0tl01kq 697 13 and and CC cord-010027-r0tl01kq 697 14 its -PRON- PRP$ cord-010027-r0tl01kq 697 15 high high JJ cord-010027-r0tl01kq 697 16 levels level NNS cord-010027-r0tl01kq 697 17 in in IN cord-010027-r0tl01kq 697 18 clinical clinical JJ cord-010027-r0tl01kq 697 19 samples sample NNS cord-010027-r0tl01kq 697 20 may may MD cord-010027-r0tl01kq 697 21 predict predict VB cord-010027-r0tl01kq 697 22 TR TR NNP cord-010027-r0tl01kq 697 23 . . . cord-010027-r0tl01kq 698 1 Purpose purpose NN cord-010027-r0tl01kq 698 2 of of IN cord-010027-r0tl01kq 698 3 the the DT cord-010027-r0tl01kq 698 4 Study study NN cord-010027-r0tl01kq 698 5 : : : cord-010027-r0tl01kq 698 6 Several several JJ cord-010027-r0tl01kq 698 7 lines line NNS cord-010027-r0tl01kq 698 8 of of IN cord-010027-r0tl01kq 698 9 evidence evidence NN cord-010027-r0tl01kq 698 10 are be VBP cord-010027-r0tl01kq 698 11 currently currently RB cord-010027-r0tl01kq 698 12 suggesting suggest VBG cord-010027-r0tl01kq 698 13 that that IN cord-010027-r0tl01kq 698 14 the the DT cord-010027-r0tl01kq 698 15 morphologic morphologic JJ cord-010027-r0tl01kq 698 16 heterogeneity heterogeneity NN cord-010027-r0tl01kq 698 17 of of IN cord-010027-r0tl01kq 698 18 breast breast NN cord-010027-r0tl01kq 698 19 cancer cancer NN cord-010027-r0tl01kq 698 20 is be VBZ cord-010027-r0tl01kq 698 21 mirrored mirror VBN cord-010027-r0tl01kq 698 22 at at IN cord-010027-r0tl01kq 698 23 the the DT cord-010027-r0tl01kq 698 24 genetic genetic JJ cord-010027-r0tl01kq 698 25 level level NN cord-010027-r0tl01kq 698 26 . . . cord-010027-r0tl01kq 699 1 Understanding understand VBG cord-010027-r0tl01kq 699 2 the the DT cord-010027-r0tl01kq 699 3 molecular molecular JJ cord-010027-r0tl01kq 699 4 genetic genetic JJ cord-010027-r0tl01kq 699 5 evolution evolution NN cord-010027-r0tl01kq 699 6 of of IN cord-010027-r0tl01kq 699 7 BC BC NNP cord-010027-r0tl01kq 699 8 would would MD cord-010027-r0tl01kq 699 9 contribute contribute VB cord-010027-r0tl01kq 699 10 further further JJ cord-010027-r0tl01kq 699 11 insights insight NNS cord-010027-r0tl01kq 699 12 into into IN cord-010027-r0tl01kq 699 13 the the DT cord-010027-r0tl01kq 699 14 molecular molecular JJ cord-010027-r0tl01kq 699 15 derangements derangement NNS cord-010027-r0tl01kq 699 16 driving drive VBG cord-010027-r0tl01kq 699 17 disease disease NN cord-010027-r0tl01kq 699 18 progression progression NN cord-010027-r0tl01kq 699 19 . . . cord-010027-r0tl01kq 700 1 Moreover moreover RB cord-010027-r0tl01kq 700 2 , , , cord-010027-r0tl01kq 700 3 varied varied JJ cord-010027-r0tl01kq 700 4 clinical clinical JJ cord-010027-r0tl01kq 700 5 outcome outcome NN cord-010027-r0tl01kq 700 6 and and CC cord-010027-r0tl01kq 700 7 response response NN cord-010027-r0tl01kq 700 8 to to IN cord-010027-r0tl01kq 700 9 similar similar JJ cord-010027-r0tl01kq 700 10 therapeutic therapeutic JJ cord-010027-r0tl01kq 700 11 regimen regimen NN cord-010027-r0tl01kq 700 12 is be VBZ cord-010027-r0tl01kq 700 13 attributed attribute VBN cord-010027-r0tl01kq 700 14 , , , cord-010027-r0tl01kq 700 15 at at IN cord-010027-r0tl01kq 700 16 least least JJS cord-010027-r0tl01kq 700 17 in in IN cord-010027-r0tl01kq 700 18 - - HYPH cord-010027-r0tl01kq 700 19 part part NN cord-010027-r0tl01kq 700 20 to to IN cord-010027-r0tl01kq 700 21 intratumoural intratumoural JJ cord-010027-r0tl01kq 700 22 heterogeneity heterogeneity NN cord-010027-r0tl01kq 700 23 . . . cord-010027-r0tl01kq 701 1 NGS NGS NNP cord-010027-r0tl01kq 701 2 can can MD cord-010027-r0tl01kq 701 3 reliably reliably RB cord-010027-r0tl01kq 701 4 study study VB cord-010027-r0tl01kq 701 5 the the DT cord-010027-r0tl01kq 701 6 genetic genetic JJ cord-010027-r0tl01kq 701 7 events event NNS cord-010027-r0tl01kq 701 8 using use VBG cord-010027-r0tl01kq 701 9 miniscule miniscule JJ cord-010027-r0tl01kq 701 10 amounts amount NNS cord-010027-r0tl01kq 701 11 of of IN cord-010027-r0tl01kq 701 12 genomic genomic JJ cord-010027-r0tl01kq 701 13 DNA dna NN cord-010027-r0tl01kq 701 14 . . . cord-010027-r0tl01kq 702 1 Methods method NNS cord-010027-r0tl01kq 702 2 : : : cord-010027-r0tl01kq 703 1 gDNA gDNA NNP cord-010027-r0tl01kq 703 2 was be VBD cord-010027-r0tl01kq 703 3 extracted extract VBN cord-010027-r0tl01kq 703 4 from from IN cord-010027-r0tl01kq 703 5 FFPE FFPE NNP cord-010027-r0tl01kq 703 6 tissue tissue NN cord-010027-r0tl01kq 703 7 sections section NNS cord-010027-r0tl01kq 703 8 from from IN cord-010027-r0tl01kq 703 9 a a DT cord-010027-r0tl01kq 703 10 case case NN cord-010027-r0tl01kq 703 11 of of IN cord-010027-r0tl01kq 703 12 invasive invasive JJ cord-010027-r0tl01kq 703 13 duct duct NN cord-010027-r0tl01kq 703 14 carcinoma carcinoma NN cord-010027-r0tl01kq 703 15 ( ( -LRB- cord-010027-r0tl01kq 703 16 3 3 CD cord-010027-r0tl01kq 703 17 primary primary JJ cord-010027-r0tl01kq 703 18 tumour tumour NN cord-010027-r0tl01kq 703 19 samples sample NNS cord-010027-r0tl01kq 703 20 and and CC cord-010027-r0tl01kq 703 21 3 3 CD cord-010027-r0tl01kq 703 22 samples sample NNS cord-010027-r0tl01kq 703 23 from from IN cord-010027-r0tl01kq 703 24 positive positive JJ cord-010027-r0tl01kq 703 25 axillary axillary JJ cord-010027-r0tl01kq 703 26 lymph lymph NN cord-010027-r0tl01kq 703 27 node node NN cord-010027-r0tl01kq 703 28 metastases metastasis NNS cord-010027-r0tl01kq 703 29 ) ) -RRB- cord-010027-r0tl01kq 703 30 . . . cord-010027-r0tl01kq 704 1 Sample sample NN cord-010027-r0tl01kq 704 2 preparation preparation NN cord-010027-r0tl01kq 704 3 and and CC cord-010027-r0tl01kq 704 4 exome exome NN cord-010027-r0tl01kq 704 5 enrichment enrichment NN cord-010027-r0tl01kq 704 6 was be VBD cord-010027-r0tl01kq 704 7 performed perform VBN cord-010027-r0tl01kq 704 8 using use VBG cord-010027-r0tl01kq 704 9 Nextera Nextera NNP cord-010027-r0tl01kq 704 10 Rapid Rapid NNP cord-010027-r0tl01kq 704 11 Capture Capture NNP cord-010027-r0tl01kq 704 12 exome exome NN cord-010027-r0tl01kq 704 13 kits kit NNS cord-010027-r0tl01kq 704 14 ( ( -LRB- cord-010027-r0tl01kq 704 15 illumina illumina NNP cord-010027-r0tl01kq 704 16 , , , cord-010027-r0tl01kq 704 17 FC-140 FC-140 NNP cord-010027-r0tl01kq 704 18 - - HYPH cord-010027-r0tl01kq 704 19 1000 1000 CD cord-010027-r0tl01kq 704 20 ) ) -RRB- cord-010027-r0tl01kq 704 21 . . . cord-010027-r0tl01kq 705 1 Exome Exome NNP cord-010027-r0tl01kq 705 2 sequencing sequencing NN cord-010027-r0tl01kq 705 3 was be VBD cord-010027-r0tl01kq 705 4 performed perform VBN cord-010027-r0tl01kq 705 5 using use VBG cord-010027-r0tl01kq 705 6 illumina illumina NNP cord-010027-r0tl01kq 705 7 MiSeq MiSeq NNP cord-010027-r0tl01kq 705 8 with with IN cord-010027-r0tl01kq 705 9 15x 15x CD cord-010027-r0tl01kq 705 10 depth depth NN cord-010027-r0tl01kq 705 11 of of IN cord-010027-r0tl01kq 705 12 coverage coverage NN cord-010027-r0tl01kq 705 13 ( ( -LRB- cord-010027-r0tl01kq 705 14 following follow VBG cord-010027-r0tl01kq 705 15 adapter adapter NN cord-010027-r0tl01kq 705 16 / / SYM cord-010027-r0tl01kq 705 17 barcode barcode NN cord-010027-r0tl01kq 705 18 trimming trimming NN cord-010027-r0tl01kq 705 19 ) ) -RRB- cord-010027-r0tl01kq 705 20 . . . cord-010027-r0tl01kq 706 1 Exploratory exploratory JJ cord-010027-r0tl01kq 706 2 analyses analysis NNS cord-010027-r0tl01kq 706 3 and and CC cord-010027-r0tl01kq 706 4 data datum NNS cord-010027-r0tl01kq 706 5 mining mining NN cord-010027-r0tl01kq 706 6 were be VBD cord-010027-r0tl01kq 706 7 executed execute VBN cord-010027-r0tl01kq 706 8 regarding regard VBG cord-010027-r0tl01kq 706 9 variant variant NN cord-010027-r0tl01kq 706 10 ( ( -LRB- cord-010027-r0tl01kq 706 11 s s NN cord-010027-r0tl01kq 706 12 ) ) -RRB- cord-010027-r0tl01kq 706 13 concordance/ concordance/ . cord-010027-r0tl01kq 706 14 discordance discordance NN cord-010027-r0tl01kq 706 15 between between IN cord-010027-r0tl01kq 706 16 primary primary JJ cord-010027-r0tl01kq 706 17 tumour tumour NN cord-010027-r0tl01kq 706 18 samples sample NNS cord-010027-r0tl01kq 706 19 and and CC cord-010027-r0tl01kq 706 20 their -PRON- PRP$ cord-010027-r0tl01kq 706 21 respective respective JJ cord-010027-r0tl01kq 706 22 metastatic metastatic JJ cord-010027-r0tl01kq 706 23 variants variant NNS cord-010027-r0tl01kq 706 24 . . . cord-010027-r0tl01kq 707 1 Summary summary NN cord-010027-r0tl01kq 707 2 of of IN cord-010027-r0tl01kq 707 3 Results result NNS cord-010027-r0tl01kq 707 4 : : : cord-010027-r0tl01kq 708 1 Initial initial JJ cord-010027-r0tl01kq 708 2 findings finding NNS cord-010027-r0tl01kq 708 3 revealed reveal VBD cord-010027-r0tl01kq 708 4 37 37 CD cord-010027-r0tl01kq 708 5 candidate candidate NN cord-010027-r0tl01kq 708 6 indels indel NNS cord-010027-r0tl01kq 708 7 common common JJ cord-010027-r0tl01kq 708 8 to to IN cord-010027-r0tl01kq 708 9 all all DT cord-010027-r0tl01kq 708 10 three three CD cord-010027-r0tl01kq 708 11 axillary axillary JJ cord-010027-r0tl01kq 708 12 lymph lymph NN cord-010027-r0tl01kq 708 13 node node NN cord-010027-r0tl01kq 708 14 samples sample NNS cord-010027-r0tl01kq 708 15 yet yet RB cord-010027-r0tl01kq 708 16 absent absent JJ cord-010027-r0tl01kq 708 17 from from IN cord-010027-r0tl01kq 708 18 the the DT cord-010027-r0tl01kq 708 19 three three CD cord-010027-r0tl01kq 708 20 primary primary JJ cord-010027-r0tl01kq 708 21 tumour tumour NN cord-010027-r0tl01kq 708 22 samples sample NNS cord-010027-r0tl01kq 708 23 . . . cord-010027-r0tl01kq 709 1 Several several JJ cord-010027-r0tl01kq 709 2 genes gene NNS cord-010027-r0tl01kq 709 3 have have VBP cord-010027-r0tl01kq 709 4 been be VBN cord-010027-r0tl01kq 709 5 identified identify VBN cord-010027-r0tl01kq 709 6 as as IN cord-010027-r0tl01kq 709 7 having have VBG cord-010027-r0tl01kq 709 8 frameshift frameshift NN cord-010027-r0tl01kq 709 9 mutations mutation NNS cord-010027-r0tl01kq 709 10 caused cause VBN cord-010027-r0tl01kq 709 11 by by IN cord-010027-r0tl01kq 709 12 indels indel NNS cord-010027-r0tl01kq 709 13 . . . cord-010027-r0tl01kq 710 1 Molecular molecular JJ cord-010027-r0tl01kq 710 2 players player NNS cord-010027-r0tl01kq 710 3 previously previously RB cord-010027-r0tl01kq 710 4 linked link VBN cord-010027-r0tl01kq 710 5 to to IN cord-010027-r0tl01kq 710 6 anti anti JJ cord-010027-r0tl01kq 710 7 - - JJ cord-010027-r0tl01kq 710 8 angiogenesis angiogenesis JJ cord-010027-r0tl01kq 710 9 are be VBP cord-010027-r0tl01kq 710 10 amongst amongst IN cord-010027-r0tl01kq 710 11 the the DT cord-010027-r0tl01kq 710 12 genes gene NNS cord-010027-r0tl01kq 710 13 affected affect VBN cord-010027-r0tl01kq 710 14 by by IN cord-010027-r0tl01kq 710 15 indel indel NN cord-010027-r0tl01kq 710 16 mutations mutation NNS cord-010027-r0tl01kq 710 17 in in IN cord-010027-r0tl01kq 710 18 their -PRON- PRP$ cord-010027-r0tl01kq 710 19 coding coding NN cord-010027-r0tl01kq 710 20 sequences sequence NNS cord-010027-r0tl01kq 710 21 that that WDT cord-010027-r0tl01kq 710 22 may may MD cord-010027-r0tl01kq 710 23 lead lead VB cord-010027-r0tl01kq 710 24 to to IN cord-010027-r0tl01kq 710 25 potential potential JJ cord-010027-r0tl01kq 710 26 abrogation abrogation NN cord-010027-r0tl01kq 710 27 of of IN cord-010027-r0tl01kq 710 28 protein protein NN cord-010027-r0tl01kq 710 29 function function NN cord-010027-r0tl01kq 710 30 . . . cord-010027-r0tl01kq 711 1 Conclusions conclusion NNS cord-010027-r0tl01kq 711 2 : : : cord-010027-r0tl01kq 712 1 These these DT cord-010027-r0tl01kq 712 2 initial initial JJ cord-010027-r0tl01kq 712 3 findings finding NNS cord-010027-r0tl01kq 712 4 provide provide VBP cord-010027-r0tl01kq 712 5 the the DT cord-010027-r0tl01kq 712 6 framework framework NN cord-010027-r0tl01kq 712 7 for for IN cord-010027-r0tl01kq 712 8 detailed detailed JJ cord-010027-r0tl01kq 712 9 molecular molecular JJ cord-010027-r0tl01kq 712 10 analyses analysis NNS cord-010027-r0tl01kq 712 11 for for IN cord-010027-r0tl01kq 712 12 assessing assess VBG cord-010027-r0tl01kq 712 13 molecular molecular JJ cord-010027-r0tl01kq 712 14 evolutionary evolutionary JJ cord-010027-r0tl01kq 712 15 events event NNS cord-010027-r0tl01kq 712 16 in in IN cord-010027-r0tl01kq 712 17 primary primary JJ cord-010027-r0tl01kq 712 18 breast breast NN cord-010027-r0tl01kq 712 19 cancer cancer NN cord-010027-r0tl01kq 712 20 and and CC cord-010027-r0tl01kq 712 21 their -PRON- PRP$ cord-010027-r0tl01kq 712 22 corresponding corresponding JJ cord-010027-r0tl01kq 712 23 metastases metastasis NNS cord-010027-r0tl01kq 712 24 . . . cord-010027-r0tl01kq 713 1 C C NNP cord-010027-r0tl01kq 713 2 - - HYPH cord-010027-r0tl01kq 713 3 MYC MYC NNP cord-010027-r0tl01kq 713 4 is be VBZ cord-010027-r0tl01kq 713 5 amplified amplify VBN cord-010027-r0tl01kq 713 6 in in IN cord-010027-r0tl01kq 713 7 approximately approximately RB cord-010027-r0tl01kq 713 8 15 15 CD cord-010027-r0tl01kq 713 9 % % NN cord-010027-r0tl01kq 713 10 of of IN cord-010027-r0tl01kq 713 11 breast breast NN cord-010027-r0tl01kq 713 12 cancers cancer NNS cord-010027-r0tl01kq 713 13 ( ( -LRB- cord-010027-r0tl01kq 713 14 BC BC NNP cord-010027-r0tl01kq 713 15 ) ) -RRB- cord-010027-r0tl01kq 713 16 and and CC cord-010027-r0tl01kq 713 17 is be VBZ cord-010027-r0tl01kq 713 18 associated associate VBN cord-010027-r0tl01kq 713 19 with with IN cord-010027-r0tl01kq 713 20 poor poor JJ cord-010027-r0tl01kq 713 21 outcome outcome NN cord-010027-r0tl01kq 713 22 . . . cord-010027-r0tl01kq 714 1 c c LS cord-010027-r0tl01kq 714 2 - - HYPH cord-010027-r0tl01kq 714 3 Myc Myc NNP cord-010027-r0tl01kq 714 4 protein protein NN cord-010027-r0tl01kq 714 5 is be VBZ cord-010027-r0tl01kq 714 6 multi multi JJ cord-010027-r0tl01kq 714 7 - - JJ cord-010027-r0tl01kq 714 8 faceted faceted JJ cord-010027-r0tl01kq 714 9 and and CC cord-010027-r0tl01kq 714 10 participates participate VBZ cord-010027-r0tl01kq 714 11 in in IN cord-010027-r0tl01kq 714 12 many many JJ cord-010027-r0tl01kq 714 13 aspects aspect NNS cord-010027-r0tl01kq 714 14 of of IN cord-010027-r0tl01kq 714 15 cellular cellular JJ cord-010027-r0tl01kq 714 16 function function NN cord-010027-r0tl01kq 714 17 and and CC cord-010027-r0tl01kq 714 18 is be VBZ cord-010027-r0tl01kq 714 19 linked link VBN cord-010027-r0tl01kq 714 20 with with IN cord-010027-r0tl01kq 714 21 therapeutic therapeutic JJ cord-010027-r0tl01kq 714 22 response response NN cord-010027-r0tl01kq 714 23 in in IN cord-010027-r0tl01kq 714 24 BC BC NNP cord-010027-r0tl01kq 714 25 . . . cord-010027-r0tl01kq 715 1 We -PRON- PRP cord-010027-r0tl01kq 715 2 hypothesised hypothesise VBD cord-010027-r0tl01kq 715 3 that that IN cord-010027-r0tl01kq 715 4 the the DT cord-010027-r0tl01kq 715 5 functional functional JJ cord-010027-r0tl01kq 715 6 role role NN cord-010027-r0tl01kq 715 7 of of IN cord-010027-r0tl01kq 715 8 c c NNP cord-010027-r0tl01kq 715 9 - - HYPH cord-010027-r0tl01kq 715 10 Myc Myc NNP cord-010027-r0tl01kq 715 11 differs differ VBZ cord-010027-r0tl01kq 715 12 between between IN cord-010027-r0tl01kq 715 13 molecular molecular JJ cord-010027-r0tl01kq 715 14 subtypes subtype NNS cord-010027-r0tl01kq 715 15 of of IN cord-010027-r0tl01kq 715 16 BC BC NNP cord-010027-r0tl01kq 715 17 . . . cord-010027-r0tl01kq 716 1 We -PRON- PRP cord-010027-r0tl01kq 716 2 therefore therefore RB cord-010027-r0tl01kq 716 3 investigated investigate VBD cord-010027-r0tl01kq 716 4 the the DT cord-010027-r0tl01kq 716 5 correlation correlation NN cord-010027-r0tl01kq 716 6 between between IN cord-010027-r0tl01kq 716 7 c c NNP cord-010027-r0tl01kq 716 8 - - HYPH cord-010027-r0tl01kq 716 9 Myc Myc NNP cord-010027-r0tl01kq 716 10 protein protein NN cord-010027-r0tl01kq 716 11 expression expression NN cord-010027-r0tl01kq 716 12 and and CC cord-010027-r0tl01kq 716 13 other other JJ cord-010027-r0tl01kq 716 14 proteins protein NNS cord-010027-r0tl01kq 716 15 involved involve VBN cord-010027-r0tl01kq 716 16 in in IN cord-010027-r0tl01kq 716 17 cell cell NN cord-010027-r0tl01kq 716 18 cycle cycle NN cord-010027-r0tl01kq 716 19 control control NN cord-010027-r0tl01kq 716 20 , , , cord-010027-r0tl01kq 716 21 proliferation proliferation NN cord-010027-r0tl01kq 716 22 , , , cord-010027-r0tl01kq 716 23 apoptosis apoptosis NN cord-010027-r0tl01kq 716 24 and and CC cord-010027-r0tl01kq 716 25 DNA dna NN cord-010027-r0tl01kq 716 26 damage damage NN cord-010027-r0tl01kq 716 27 together together RB cord-010027-r0tl01kq 716 28 with with IN cord-010027-r0tl01kq 716 29 clinicopathological clinicopathological JJ cord-010027-r0tl01kq 716 30 parameters parameter NNS cord-010027-r0tl01kq 716 31 , , , cord-010027-r0tl01kq 716 32 outcome outcome NN cord-010027-r0tl01kq 716 33 and and CC cord-010027-r0tl01kq 716 34 treatments treatment NNS cord-010027-r0tl01kq 716 35 in in IN cord-010027-r0tl01kq 716 36 early early JJ cord-010027-r0tl01kq 716 37 invasive invasive JJ cord-010027-r0tl01kq 716 38 primary primary JJ cord-010027-r0tl01kq 716 39 BC BC NNP cord-010027-r0tl01kq 716 40 ( ( -LRB- cord-010027-r0tl01kq 716 41 n=1,106 n=1,106 NNP cord-010027-r0tl01kq 716 42 ) ) -RRB- cord-010027-r0tl01kq 716 43 using use VBG cord-010027-r0tl01kq 716 44 immunuohistochemistry immunuohistochemistry NNP cord-010027-r0tl01kq 716 45 . . . cord-010027-r0tl01kq 717 1 The the DT cord-010027-r0tl01kq 717 2 METABRIC METABRIC NNP cord-010027-r0tl01kq 717 3 BC BC NNP cord-010027-r0tl01kq 717 4 cohort cohort NN cord-010027-r0tl01kq 717 5 ( ( -LRB- cord-010027-r0tl01kq 717 6 n=1,980 n=1,980 NNP cord-010027-r0tl01kq 717 7 ) ) -RRB- cord-010027-r0tl01kq 717 8 was be VBD cord-010027-r0tl01kq 717 9 evaluated evaluate VBN cord-010027-r0tl01kq 717 10 for for IN cord-010027-r0tl01kq 717 11 c c NNP cord-010027-r0tl01kq 717 12 - - HYPH cord-010027-r0tl01kq 717 13 Myc Myc NNP cord-010027-r0tl01kq 717 14 mRNA mrna NN cord-010027-r0tl01kq 717 15 expression expression NN cord-010027-r0tl01kq 717 16 . . . cord-010027-r0tl01kq 718 1 In in IN cord-010027-r0tl01kq 718 2 whole whole JJ cord-010027-r0tl01kq 718 3 series series NN cord-010027-r0tl01kq 718 4 , , , cord-010027-r0tl01kq 718 5 there there EX cord-010027-r0tl01kq 718 6 was be VBD cord-010027-r0tl01kq 718 7 significant significant JJ cord-010027-r0tl01kq 718 8 association association NN cord-010027-r0tl01kq 718 9 between between IN cord-010027-r0tl01kq 718 10 c c NNP cord-010027-r0tl01kq 718 11 - - HYPH cord-010027-r0tl01kq 718 12 Myc Myc NNP cord-010027-r0tl01kq 718 13 protein protein NN cord-010027-r0tl01kq 718 14 expression expression NN cord-010027-r0tl01kq 718 15 with with IN cord-010027-r0tl01kq 718 16 higher high JJR cord-010027-r0tl01kq 718 17 tumour tumour NN cord-010027-r0tl01kq 718 18 grade grade NN cord-010027-r0tl01kq 718 19 , , , cord-010027-r0tl01kq 718 20 lymph lymph NN cord-010027-r0tl01kq 718 21 node(LN node(ln NN cord-010027-r0tl01kq 718 22 ) ) -RRB- cord-010027-r0tl01kq 718 23 positivity positivity NN cord-010027-r0tl01kq 718 24 and and CC cord-010027-r0tl01kq 718 25 medullary medullary NN cord-010027-r0tl01kq 718 26 - - HYPH cord-010027-r0tl01kq 718 27 like like JJ cord-010027-r0tl01kq 718 28 tumours tumour NNS cord-010027-r0tl01kq 718 29 . . . cord-010027-r0tl01kq 719 1 C C NNP cord-010027-r0tl01kq 719 2 - - HYPH cord-010027-r0tl01kq 719 3 myc myc NNP cord-010027-r0tl01kq 719 4 showed show VBD cord-010027-r0tl01kq 719 5 differential differential NNP cord-010027-r0tl01kq 719 6 association association NN cord-010027-r0tl01kq 719 7 with with IN cord-010027-r0tl01kq 719 8 other other JJ cord-010027-r0tl01kq 719 9 proteins protein NNS cord-010027-r0tl01kq 719 10 in in IN cord-010027-r0tl01kq 719 11 the the DT cord-010027-r0tl01kq 719 12 molecular molecular JJ cord-010027-r0tl01kq 719 13 classes class NNS cord-010027-r0tl01kq 719 14 . . . cord-010027-r0tl01kq 720 1 In in IN cord-010027-r0tl01kq 720 2 luminal luminal JJ cord-010027-r0tl01kq 720 3 A a DT cord-010027-r0tl01kq 720 4 tumours tumour NNS cord-010027-r0tl01kq 720 5 , , , cord-010027-r0tl01kq 720 6 c c NN cord-010027-r0tl01kq 720 7 - - : cord-010027-r0tl01kq 720 8 Myc Myc NNP cord-010027-r0tl01kq 720 9 was be VBD cord-010027-r0tl01kq 720 10 associated associate VBN cord-010027-r0tl01kq 720 11 with with IN cord-010027-r0tl01kq 720 12 ATM ATM NNS cord-010027-r0tl01kq 720 13 ( ( -LRB- cord-010027-r0tl01kq 720 14 p=0.005 p=0.005 NNP cord-010027-r0tl01kq 720 15 ) ) -RRB- cord-010027-r0tl01kq 721 1 , , , cord-010027-r0tl01kq 721 2 Cyclin Cyclin NNP cord-010027-r0tl01kq 721 3 B1 b1 NN cord-010027-r0tl01kq 721 4 ( ( -LRB- cord-010027-r0tl01kq 721 5 p=0.002 p=0.002 NNP cord-010027-r0tl01kq 721 6 ) ) -RRB- cord-010027-r0tl01kq 721 7 , , , cord-010027-r0tl01kq 721 8 PIK3CA pik3ca NN cord-010027-r0tl01kq 721 9 ( ( -LRB- cord-010027-r0tl01kq 721 10 p=0.009 p=0.009 NN cord-010027-r0tl01kq 721 11 ) ) -RRB- cord-010027-r0tl01kq 721 12 and and CC cord-010027-r0tl01kq 722 1 Ki67 Ki67 NNP cord-010027-r0tl01kq 722 2 ( ( -LRB- cord-010027-r0tl01kq 722 3 p<0.001 p<0.001 JJ cord-010027-r0tl01kq 722 4 ) ) -RRB- cord-010027-r0tl01kq 722 5 . . . cord-010027-r0tl01kq 723 1 In in IN cord-010027-r0tl01kq 723 2 contrast contrast NN cord-010027-r0tl01kq 723 3 , , , cord-010027-r0tl01kq 723 4 in in IN cord-010027-r0tl01kq 723 5 basal basal NN cord-010027-r0tl01kq 723 6 - - HYPH cord-010027-r0tl01kq 723 7 like like JJ cord-010027-r0tl01kq 723 8 tumours tumour NNS cord-010027-r0tl01kq 723 9 , , , cord-010027-r0tl01kq 723 10 c c NNP cord-010027-r0tl01kq 723 11 - - : cord-010027-r0tl01kq 723 12 Myc Myc NNP cord-010027-r0tl01kq 723 13 showed show VBD cord-010027-r0tl01kq 723 14 positive positive JJ cord-010027-r0tl01kq 723 15 associated associate VBN cord-010027-r0tl01kq 723 16 with with IN cord-010027-r0tl01kq 723 17 Cyclin Cyclin NNP cord-010027-r0tl01kq 723 18 E E NNP cord-010027-r0tl01kq 723 19 ( ( -LRB- cord-010027-r0tl01kq 723 20 p=0.003 p=0.003 NNP cord-010027-r0tl01kq 723 21 ) ) -RRB- cord-010027-r0tl01kq 723 22 and and CC cord-010027-r0tl01kq 723 23 p16 p16 NN cord-010027-r0tl01kq 723 24 ( ( -LRB- cord-010027-r0tl01kq 723 25 p=0.042 p=0.042 NNP cord-010027-r0tl01kq 723 26 ) ) -RRB- cord-010027-r0tl01kq 723 27 expression expression NN cord-010027-r0tl01kq 723 28 . . . cord-010027-r0tl01kq 724 1 c c LS cord-010027-r0tl01kq 724 2 - - : cord-010027-r0tl01kq 724 3 Myc Myc NNP cord-010027-r0tl01kq 724 4 was be VBD cord-010027-r0tl01kq 724 5 an an DT cord-010027-r0tl01kq 724 6 independent independent JJ cord-010027-r0tl01kq 724 7 predictor predictor NN cord-010027-r0tl01kq 724 8 of of IN cord-010027-r0tl01kq 724 9 a a DT cord-010027-r0tl01kq 724 10 shorter shorter RBR cord-010027-r0tl01kq 724 11 distant distant JJ cord-010027-r0tl01kq 724 12 metastases metastasis NNS cord-010027-r0tl01kq 724 13 free free JJ cord-010027-r0tl01kq 724 14 survival survival NN cord-010027-r0tl01kq 724 15 in in IN cord-010027-r0tl01kq 724 16 luminal luminal NN cord-010027-r0tl01kq 725 1 A a DT cord-010027-r0tl01kq 725 2 LN+ LN+ NNP cord-010027-r0tl01kq 725 3 tumours tumour NNS cord-010027-r0tl01kq 725 4 treated treat VBN cord-010027-r0tl01kq 725 5 with with IN cord-010027-r0tl01kq 725 6 endocrine endocrine JJ cord-010027-r0tl01kq 725 7 therapy therapy NN cord-010027-r0tl01kq 725 8 ( ( -LRB- cord-010027-r0tl01kq 725 9 ET et NN cord-010027-r0tl01kq 725 10 ; ; : cord-010027-r0tl01kq 725 11 p=0.013 p=0.013 NNP cord-010027-r0tl01kq 725 12 ) ) -RRB- cord-010027-r0tl01kq 725 13 . . . cord-010027-r0tl01kq 726 1 c c LS cord-010027-r0tl01kq 726 2 - - HYPH cord-010027-r0tl01kq 726 3 Myc Myc NNP cord-010027-r0tl01kq 726 4 expression expression NN cord-010027-r0tl01kq 726 5 did do VBD cord-010027-r0tl01kq 726 6 not not RB cord-010027-r0tl01kq 726 7 predict predict VB cord-010027-r0tl01kq 726 8 patient patient JJ cord-010027-r0tl01kq 726 9 outcome outcome NN cord-010027-r0tl01kq 726 10 in in IN cord-010027-r0tl01kq 726 11 the the DT cord-010027-r0tl01kq 726 12 other other JJ cord-010027-r0tl01kq 726 13 molecular molecular JJ cord-010027-r0tl01kq 726 14 subtypes subtype NNS cord-010027-r0tl01kq 726 15 with with IN cord-010027-r0tl01kq 726 16 respect respect NN cord-010027-r0tl01kq 726 17 to to IN cord-010027-r0tl01kq 726 18 adjuvant adjuvant JJ cord-010027-r0tl01kq 726 19 treatment treatment NN cord-010027-r0tl01kq 726 20 . . . cord-010027-r0tl01kq 727 1 High high JJ cord-010027-r0tl01kq 727 2 c c NN cord-010027-r0tl01kq 727 3 - - HYPH cord-010027-r0tl01kq 727 4 Myc Myc NNP cord-010027-r0tl01kq 727 5 mRNA mrna NN cord-010027-r0tl01kq 727 6 expression expression NN cord-010027-r0tl01kq 727 7 was be VBD cord-010027-r0tl01kq 727 8 associated associate VBN cord-010027-r0tl01kq 727 9 with with IN cord-010027-r0tl01kq 727 10 higher high JJR cord-010027-r0tl01kq 727 11 grade grade NN cord-010027-r0tl01kq 727 12 and and CC cord-010027-r0tl01kq 727 13 basal basal NN cord-010027-r0tl01kq 727 14 phenotype phenotype NN cord-010027-r0tl01kq 727 15 ( ( -LRB- cord-010027-r0tl01kq 727 16 p<0.001 p<0.001 CD cord-010027-r0tl01kq 727 17 ) ) -RRB- cord-010027-r0tl01kq 727 18 . . . cord-010027-r0tl01kq 728 1 In in IN cord-010027-r0tl01kq 728 2 luminal luminal JJ cord-010027-r0tl01kq 728 3 tumours tumour NNS cord-010027-r0tl01kq 728 4 treated treat VBN cord-010027-r0tl01kq 728 5 with with IN cord-010027-r0tl01kq 728 6 ET ET NNP cord-010027-r0tl01kq 728 7 , , , cord-010027-r0tl01kq 728 8 c c NNP cord-010027-r0tl01kq 728 9 - - HYPH cord-010027-r0tl01kq 728 10 Myc Myc NNP cord-010027-r0tl01kq 728 11 mRNA mRNA NNP cord-010027-r0tl01kq 728 12 expression expression NN cord-010027-r0tl01kq 728 13 was be VBD cord-010027-r0tl01kq 728 14 associated associate VBN cord-010027-r0tl01kq 728 15 with with IN cord-010027-r0tl01kq 728 16 BC BC NNP cord-010027-r0tl01kq 728 17 specific specific JJ cord-010027-r0tl01kq 728 18 survival survival NN cord-010027-r0tl01kq 728 19 ( ( -LRB- cord-010027-r0tl01kq 728 20 p=0.001 p=0.001 NNP cord-010027-r0tl01kq 728 21 ) ) -RRB- cord-010027-r0tl01kq 728 22 . . . cord-010027-r0tl01kq 729 1 c c LS cord-010027-r0tl01kq 729 2 - - : cord-010027-r0tl01kq 729 3 Myc Myc NNP cord-010027-r0tl01kq 729 4 function function NN cord-010027-r0tl01kq 729 5 is be VBZ cord-010027-r0tl01kq 729 6 associated associate VBN cord-010027-r0tl01kq 729 7 with with IN cord-010027-r0tl01kq 729 8 specific specific JJ cord-010027-r0tl01kq 729 9 molecular molecular JJ cord-010027-r0tl01kq 729 10 subtypes subtype NNS cord-010027-r0tl01kq 729 11 of of IN cord-010027-r0tl01kq 729 12 BC BC NNP cord-010027-r0tl01kq 729 13 and and CC cord-010027-r0tl01kq 729 14 confers confer VBZ cord-010027-r0tl01kq 729 15 resistance resistance NN cord-010027-r0tl01kq 729 16 to to IN cord-010027-r0tl01kq 729 17 ET ET NNP cord-010027-r0tl01kq 729 18 . . . cord-010027-r0tl01kq 730 1 The the DT cord-010027-r0tl01kq 730 2 diverse diverse JJ cord-010027-r0tl01kq 730 3 mechanisms mechanism NNS cord-010027-r0tl01kq 730 4 of of IN cord-010027-r0tl01kq 730 5 c c NN cord-010027-r0tl01kq 730 6 - - HYPH cord-010027-r0tl01kq 730 7 Myc Myc NNP cord-010027-r0tl01kq 730 8 function function NN cord-010027-r0tl01kq 730 9 , , , cord-010027-r0tl01kq 730 10 particularly particularly RB cord-010027-r0tl01kq 730 11 in in IN cord-010027-r0tl01kq 730 12 luminal luminal JJ cord-010027-r0tl01kq 730 13 A a DT cord-010027-r0tl01kq 730 14 BC BC NNP cord-010027-r0tl01kq 730 15 , , , cord-010027-r0tl01kq 730 16 warrants warrant NNS cord-010027-r0tl01kq 730 17 further further JJ cord-010027-r0tl01kq 730 18 investigation investigation NN cord-010027-r0tl01kq 730 19 . . . cord-010027-r0tl01kq 731 1 Metasin Metasin NNP cord-010027-r0tl01kq 731 2 Axillary Axillary NNP cord-010027-r0tl01kq 731 3 Predictive Predictive NNP cord-010027-r0tl01kq 731 4 Score Score NNP cord-010027-r0tl01kq 731 5 ( ( -LRB- cord-010027-r0tl01kq 731 6 MAPS map NNS cord-010027-r0tl01kq 731 7 ) ) -RRB- cord-010027-r0tl01kq 731 8 : : : cord-010027-r0tl01kq 731 9 A a DT cord-010027-r0tl01kq 731 10 Measure measure NN cord-010027-r0tl01kq 731 11 of of IN cord-010027-r0tl01kq 731 12 Axillary Axillary NNP cord-010027-r0tl01kq 731 13 Nodal Nodal NNP cord-010027-r0tl01kq 731 14 Disease Disease NNP cord-010027-r0tl01kq 731 15 Prediction Prediction NNP cord-010027-r0tl01kq 731 16 to to TO cord-010027-r0tl01kq 731 17 Provide provide VB cord-010027-r0tl01kq 731 18 an an DT cord-010027-r0tl01kq 731 19 Informed Informed NNP cord-010027-r0tl01kq 731 20 Choice Choice NNP cord-010027-r0tl01kq 731 21 for for IN cord-010027-r0tl01kq 731 22 Breast Breast NNP cord-010027-r0tl01kq 731 23 Cancer Cancer NNP cord-010027-r0tl01kq 731 24 Patients Patients NNPS cord-010027-r0tl01kq 731 25 and and CC cord-010027-r0tl01kq 731 26 Surgeons Surgeons NNPS cord-010027-r0tl01kq 731 27 P P NNP cord-010027-r0tl01kq 731 28 PP PP NNP cord-010027-r0tl01kq 731 29 Gopinath Gopinath NNP cord-010027-r0tl01kq 731 30 1 1 CD cord-010027-r0tl01kq 731 31 ; ; : cord-010027-r0tl01kq 731 32 D D NNP cord-010027-r0tl01kq 731 33 George George NNP cord-010027-r0tl01kq 731 34 1 1 CD cord-010027-r0tl01kq 731 35 ; ; : cord-010027-r0tl01kq 731 36 P P NNP cord-010027-r0tl01kq 731 37 Sai Sai NNP cord-010027-r0tl01kq 731 38 - - HYPH cord-010027-r0tl01kq 731 39 Giridhar Giridhar NNP cord-010027-r0tl01kq 731 40 2 2 CD cord-010027-r0tl01kq 731 41 ; ; : cord-010027-r0tl01kq 731 42 S S NNP cord-010027-r0tl01kq 731 43 Jader Jader NNP cord-010027-r0tl01kq 731 44 1 1 CD cord-010027-r0tl01kq 731 45 ; ; : cord-010027-r0tl01kq 731 46 E E NNP cord-010027-r0tl01kq 731 47 Arkoumani Arkoumani NNP cord-010027-r0tl01kq 731 48 1 1 CD cord-010027-r0tl01kq 731 49 ; ; : cord-010027-r0tl01kq 731 50 S S NNP cord-010027-r0tl01kq 731 51 Holt Holt NNP cord-010027-r0tl01kq 731 52 2 2 CD cord-010027-r0tl01kq 731 53 ; ; : cord-010027-r0tl01kq 731 54 G G NNP cord-010027-r0tl01kq 731 55 Francis Francis NNP cord-010027-r0tl01kq 731 56 3 3 CD cord-010027-r0tl01kq 731 57 ; ; : cord-010027-r0tl01kq 731 58 C C NNP cord-010027-r0tl01kq 731 59 Yiangou Yiangou NNP cord-010027-r0tl01kq 731 60 3 3 CD cord-010027-r0tl01kq 731 61 ; ; : cord-010027-r0tl01kq 731 62 S S NNP cord-010027-r0tl01kq 731 63 Al Al NNP cord-010027-r0tl01kq 731 64 Ramadhani Ramadhani NNP cord-010027-r0tl01kq 731 65 4 4 CD cord-010027-r0tl01kq 731 66 ; ; : cord-010027-r0tl01kq 731 67 S S NNP cord-010027-r0tl01kq 731 68 El El NNP cord-010027-r0tl01kq 731 69 Sheikh Sheikh NNP cord-010027-r0tl01kq 731 70 5 5 CD cord-010027-r0tl01kq 731 71 ; ; : cord-010027-r0tl01kq 731 72 N n CD cord-010027-r0tl01kq 731 73 Agrawal Agrawal NNP cord-010027-r0tl01kq 731 74 3 3 CD cord-010027-r0tl01kq 731 75 ; ; : cord-010027-r0tl01kq 732 1 V V NNP cord-010027-r0tl01kq 732 2 Sundaresan Sundaresan NNP cord-010027-r0tl01kq 732 3 1 1 CD cord-010027-r0tl01kq 732 4 Purpose Purpose NNP cord-010027-r0tl01kq 732 5 of of IN cord-010027-r0tl01kq 732 6 study study NN cord-010027-r0tl01kq 732 7 : : : cord-010027-r0tl01kq 732 8 Intra intra JJ cord-010027-r0tl01kq 732 9 - - JJ cord-010027-r0tl01kq 732 10 operative operative JJ cord-010027-r0tl01kq 732 11 sentinel sentinel JJ cord-010027-r0tl01kq 732 12 lymph lymph NN cord-010027-r0tl01kq 732 13 node node NN cord-010027-r0tl01kq 732 14 sampling sampling NN cord-010027-r0tl01kq 732 15 and and CC cord-010027-r0tl01kq 732 16 molecular molecular JJ cord-010027-r0tl01kq 732 17 analysis analysis NN cord-010027-r0tl01kq 732 18 empowers empower VBZ cord-010027-r0tl01kq 732 19 the the DT cord-010027-r0tl01kq 732 20 surgeon surgeon NN cord-010027-r0tl01kq 732 21 to to TO cord-010027-r0tl01kq 732 22 carry carry VB cord-010027-r0tl01kq 732 23 out out RP cord-010027-r0tl01kq 732 24 axillary axillary JJ cord-010027-r0tl01kq 732 25 clearance clearance NN cord-010027-r0tl01kq 732 26 as as IN cord-010027-r0tl01kq 732 27 a a DT cord-010027-r0tl01kq 732 28 one one CD cord-010027-r0tl01kq 732 29 - - HYPH cord-010027-r0tl01kq 732 30 step step NN cord-010027-r0tl01kq 732 31 process process NN cord-010027-r0tl01kq 732 32 . . . cord-010027-r0tl01kq 733 1 We -PRON- PRP cord-010027-r0tl01kq 733 2 have have VBP cord-010027-r0tl01kq 733 3 recently recently RB cord-010027-r0tl01kq 733 4 completed complete VBN cord-010027-r0tl01kq 733 5 the the DT cord-010027-r0tl01kq 733 6 clinical clinical JJ cord-010027-r0tl01kq 733 7 validation validation NN cord-010027-r0tl01kq 733 8 of of IN cord-010027-r0tl01kq 733 9 Metasin Metasin NNP cord-010027-r0tl01kq 733 10 , , , cord-010027-r0tl01kq 733 11 an an DT cord-010027-r0tl01kq 733 12 intraoperative intraoperative JJ cord-010027-r0tl01kq 733 13 molecular molecular JJ cord-010027-r0tl01kq 733 14 assay assay NN cord-010027-r0tl01kq 733 15 for for IN cord-010027-r0tl01kq 733 16 sentinel sentinel JJ cord-010027-r0tl01kq 733 17 lymph lymph NNP cord-010027-r0tl01kq 733 18 node node NN cord-010027-r0tl01kq 733 19 analysis analysis NN cord-010027-r0tl01kq 733 20 in in IN cord-010027-r0tl01kq 733 21 breast breast NN cord-010027-r0tl01kq 733 22 cancer cancer NN cord-010027-r0tl01kq 733 23 patients patient NNS cord-010027-r0tl01kq 733 24 ( ( -LRB- cord-010027-r0tl01kq 733 25 1836 1836 CD cord-010027-r0tl01kq 733 26 cases case NNS cord-010027-r0tl01kq 733 27 ) ) -RRB- cord-010027-r0tl01kq 733 28 . . . cord-010027-r0tl01kq 734 1 Method method NN cord-010027-r0tl01kq 734 2 : : : cord-010027-r0tl01kq 735 1 The the DT cord-010027-r0tl01kq 735 2 assay assay NN cord-010027-r0tl01kq 735 3 uses use VBZ cord-010027-r0tl01kq 735 4 2 2 CD cord-010027-r0tl01kq 735 5 positive positive JJ cord-010027-r0tl01kq 735 6 predictive predictive JJ cord-010027-r0tl01kq 735 7 markers marker NNS cord-010027-r0tl01kq 735 8 and and CC cord-010027-r0tl01kq 735 9 is be VBZ cord-010027-r0tl01kq 735 10 quantitative quantitative JJ cord-010027-r0tl01kq 735 11 , , , cord-010027-r0tl01kq 735 12 enabling enable VBG cord-010027-r0tl01kq 735 13 the the DT cord-010027-r0tl01kq 735 14 prediction prediction NN cord-010027-r0tl01kq 735 15 of of IN cord-010027-r0tl01kq 735 16 tumour tumour NN cord-010027-r0tl01kq 735 17 volume volume NN cord-010027-r0tl01kq 735 18 using use VBG cord-010027-r0tl01kq 735 19 2 2 CD cord-010027-r0tl01kq 735 20 markers marker NNS cord-010027-r0tl01kq 735 21 CK19 CK19 NNP cord-010027-r0tl01kq 735 22 and and CC cord-010027-r0tl01kq 735 23 Mammaglobin Mammaglobin NNP cord-010027-r0tl01kq 735 24 . . . cord-010027-r0tl01kq 736 1 In in IN cord-010027-r0tl01kq 736 2 this this DT cord-010027-r0tl01kq 736 3 study study NN cord-010027-r0tl01kq 736 4 group group NN cord-010027-r0tl01kq 736 5 , , , cord-010027-r0tl01kq 736 6 439 439 CD cord-010027-r0tl01kq 736 7 patients patient NNS cord-010027-r0tl01kq 736 8 had have VBD cord-010027-r0tl01kq 736 9 positive positive JJ cord-010027-r0tl01kq 736 10 sentinel sentinel JJ cord-010027-r0tl01kq 736 11 nodes node NNS cord-010027-r0tl01kq 736 12 and and CC cord-010027-r0tl01kq 736 13 444 444 CD cord-010027-r0tl01kq 736 14 cases case NNS cord-010027-r0tl01kq 736 15 underwent undergo VBD cord-010027-r0tl01kq 736 16 axillary axillary JJ cord-010027-r0tl01kq 736 17 clearance clearance NN cord-010027-r0tl01kq 736 18 . . . cord-010027-r0tl01kq 737 1 Of of IN cord-010027-r0tl01kq 737 2 the the DT cord-010027-r0tl01kq 737 3 axillary axillary JJ cord-010027-r0tl01kq 737 4 clearance clearance NN cord-010027-r0tl01kq 737 5 cases case NNS cord-010027-r0tl01kq 737 6 , , , cord-010027-r0tl01kq 737 7 26 26 CD cord-010027-r0tl01kq 737 8 % % NN cord-010027-r0tl01kq 737 9 contained contain VBD cord-010027-r0tl01kq 737 10 positive positive JJ cord-010027-r0tl01kq 737 11 lymph lymph NN cord-010027-r0tl01kq 737 12 nodes node NNS cord-010027-r0tl01kq 737 13 . . . cord-010027-r0tl01kq 738 1 84 84 CD cord-010027-r0tl01kq 738 2 % % NN cord-010027-r0tl01kq 738 3 were be VBD cord-010027-r0tl01kq 738 4 sentinel sentinel JJ cord-010027-r0tl01kq 738 5 node node NN cord-010027-r0tl01kq 738 6 ( ( -LRB- cord-010027-r0tl01kq 738 7 SNB SNB NNP cord-010027-r0tl01kq 738 8 ) ) -RRB- cord-010027-r0tl01kq 738 9 macrometastases macrometastase NNS cord-010027-r0tl01kq 738 10 , , , cord-010027-r0tl01kq 738 11 5 5 CD cord-010027-r0tl01kq 738 12 % % NN cord-010027-r0tl01kq 738 13 were be VBD cord-010027-r0tl01kq 738 14 SNB SNB NNP cord-010027-r0tl01kq 738 15 micrometastases micrometastase NNS cord-010027-r0tl01kq 738 16 and and CC cord-010027-r0tl01kq 738 17 11 11 CD cord-010027-r0tl01kq 738 18 % % NN cord-010027-r0tl01kq 738 19 were be VBD cord-010027-r0tl01kq 738 20 SNB SNB NNP cord-010027-r0tl01kq 738 21 negative negative JJ cord-010027-r0tl01kq 738 22 or or CC cord-010027-r0tl01kq 738 23 contained contain VBN cord-010027-r0tl01kq 738 24 isolated isolated JJ cord-010027-r0tl01kq 738 25 tumour tumour NN cord-010027-r0tl01kq 738 26 cells cell NNS cord-010027-r0tl01kq 738 27 . . . cord-010027-r0tl01kq 739 1 Informative informative JJ cord-010027-r0tl01kq 739 2 data datum NNS cord-010027-r0tl01kq 739 3 was be VBD cord-010027-r0tl01kq 739 4 available available JJ cord-010027-r0tl01kq 739 5 for for IN cord-010027-r0tl01kq 739 6 sentinel sentinel JJ cord-010027-r0tl01kq 739 7 nodes node NNS cord-010027-r0tl01kq 739 8 from from IN cord-010027-r0tl01kq 739 9 125 125 CD cord-010027-r0tl01kq 739 10 positive positive JJ cord-010027-r0tl01kq 739 11 cases case NNS cord-010027-r0tl01kq 739 12 . . . cord-010027-r0tl01kq 740 1 Results result NNS cord-010027-r0tl01kq 740 2 : : : cord-010027-r0tl01kq 741 1 Using use VBG cord-010027-r0tl01kq 741 2 the the DT cord-010027-r0tl01kq 741 3 qPCR qpcr NN cord-010027-r0tl01kq 741 4 values value NNS cord-010027-r0tl01kq 741 5 ( ( -LRB- cord-010027-r0tl01kq 741 6 from from IN cord-010027-r0tl01kq 741 7 Metasin Metasin NNP cord-010027-r0tl01kq 741 8 assays assay NNS cord-010027-r0tl01kq 741 9 using use VBG cord-010027-r0tl01kq 741 10 standardised standardised JJ cord-010027-r0tl01kq 741 11 pre pre NN cord-010027-r0tl01kq 741 12 - - NNS cord-010027-r0tl01kq 741 13 mixes mix NNS cord-010027-r0tl01kq 741 14 ) ) -RRB- cord-010027-r0tl01kq 741 15 and and CC cord-010027-r0tl01kq 741 16 clinical clinical JJ cord-010027-r0tl01kq 741 17 axillary axillary JJ cord-010027-r0tl01kq 741 18 clearance clearance NN cord-010027-r0tl01kq 741 19 data datum NNS cord-010027-r0tl01kq 741 20 , , , cord-010027-r0tl01kq 741 21 the the DT cord-010027-r0tl01kq 741 22 cases case NNS cord-010027-r0tl01kq 741 23 have have VBP cord-010027-r0tl01kq 741 24 been be VBN cord-010027-r0tl01kq 741 25 stratified stratify VBN cord-010027-r0tl01kq 741 26 on on IN cord-010027-r0tl01kq 741 27 the the DT cord-010027-r0tl01kq 741 28 basis basis NN cord-010027-r0tl01kq 741 29 of of IN cord-010027-r0tl01kq 741 30 the the DT cord-010027-r0tl01kq 741 31 involvement involvement NN cord-010027-r0tl01kq 741 32 of of IN cord-010027-r0tl01kq 741 33 other other JJ cord-010027-r0tl01kq 741 34 axillary axillary JJ cord-010027-r0tl01kq 741 35 nodes node NNS cord-010027-r0tl01kq 741 36 . . . cord-010027-r0tl01kq 742 1 We -PRON- PRP cord-010027-r0tl01kq 742 2 have have VBP cord-010027-r0tl01kq 742 3 shown show VBN cord-010027-r0tl01kq 742 4 a a DT cord-010027-r0tl01kq 742 5 three three CD cord-010027-r0tl01kq 742 6 - - HYPH cord-010027-r0tl01kq 742 7 tiered tiered JJ cord-010027-r0tl01kq 742 8 predictive predictive JJ cord-010027-r0tl01kq 742 9 grouping grouping NN cord-010027-r0tl01kq 742 10 exists exist VBZ cord-010027-r0tl01kq 742 11 : : : cord-010027-r0tl01kq 743 1 Group Group NNP cord-010027-r0tl01kq 743 2 A A NNP cord-010027-r0tl01kq 743 3 includes include VBZ cord-010027-r0tl01kq 743 4 low low JJ cord-010027-r0tl01kq 743 5 tumour tumour NN cord-010027-r0tl01kq 743 6 volume volume NN cord-010027-r0tl01kq 743 7 disease disease NN cord-010027-r0tl01kq 743 8 with with IN cord-010027-r0tl01kq 743 9 a a DT cord-010027-r0tl01kq 743 10 nodal nodal JJ cord-010027-r0tl01kq 743 11 positivity positivity NN cord-010027-r0tl01kq 743 12 of of IN cord-010027-r0tl01kq 743 13 25 25 CD cord-010027-r0tl01kq 743 14 % % NN cord-010027-r0tl01kq 743 15 within within IN cord-010027-r0tl01kq 743 16 the the DT cord-010027-r0tl01kq 743 17 axilla axilla NN cord-010027-r0tl01kq 743 18 ( ( -LRB- cord-010027-r0tl01kq 743 19 n=16 n=16 NNP cord-010027-r0tl01kq 743 20 ) ) -RRB- cord-010027-r0tl01kq 743 21 : : : cord-010027-r0tl01kq 744 1 Group Group NNP cord-010027-r0tl01kq 744 2 B B NNP cord-010027-r0tl01kq 744 3 with with IN cord-010027-r0tl01kq 744 4 a a DT cord-010027-r0tl01kq 744 5 44 44 CD cord-010027-r0tl01kq 744 6 % % NN cord-010027-r0tl01kq 744 7 positivity positivity NN cord-010027-r0tl01kq 744 8 of of IN cord-010027-r0tl01kq 744 9 other other JJ cord-010027-r0tl01kq 744 10 nodal nodal JJ cord-010027-r0tl01kq 744 11 involvement involvement NN cord-010027-r0tl01kq 744 12 ( ( -LRB- cord-010027-r0tl01kq 744 13 n=80 n=80 NNP cord-010027-r0tl01kq 744 14 ) ) -RRB- cord-010027-r0tl01kq 744 15 and and CC cord-010027-r0tl01kq 744 16 Group Group NNP cord-010027-r0tl01kq 744 17 C C NNP cord-010027-r0tl01kq 744 18 with with IN cord-010027-r0tl01kq 744 19 positivity positivity NN cord-010027-r0tl01kq 744 20 of of IN cord-010027-r0tl01kq 744 21 73 73 CD cord-010027-r0tl01kq 744 22 % % NN cord-010027-r0tl01kq 744 23 of of IN cord-010027-r0tl01kq 744 24 axillary axillary JJ cord-010027-r0tl01kq 744 25 clearances clearance NNS cord-010027-r0tl01kq 744 26 ( ( -LRB- cord-010027-r0tl01kq 744 27 n=29 n=29 NNP cord-010027-r0tl01kq 744 28 ) ) -RRB- cord-010027-r0tl01kq 744 29 . . . cord-010027-r0tl01kq 745 1 The the DT cord-010027-r0tl01kq 745 2 clustering clustering NN cord-010027-r0tl01kq 745 3 of of IN cord-010027-r0tl01kq 745 4 the the DT cord-010027-r0tl01kq 745 5 Metasin Metasin NNP cord-010027-r0tl01kq 745 6 data data NN cord-010027-r0tl01kq 745 7 is be VBZ cord-010027-r0tl01kq 745 8 dependent dependent JJ cord-010027-r0tl01kq 745 9 on on IN cord-010027-r0tl01kq 745 10 the the DT cord-010027-r0tl01kq 745 11 qPCR qpcr NN cord-010027-r0tl01kq 745 12 results result NNS cord-010027-r0tl01kq 745 13 and and CC cord-010027-r0tl01kq 745 14 shows show VBZ cord-010027-r0tl01kq 745 15 that that IN cord-010027-r0tl01kq 745 16 the the DT cord-010027-r0tl01kq 745 17 cases case NNS cord-010027-r0tl01kq 745 18 can can MD cord-010027-r0tl01kq 745 19 be be VB cord-010027-r0tl01kq 745 20 sub sub NN cord-010027-r0tl01kq 745 21 - - JJ cord-010027-r0tl01kq 745 22 grouped group VBN cord-010027-r0tl01kq 745 23 to to TO cord-010027-r0tl01kq 745 24 provide provide VB cord-010027-r0tl01kq 745 25 a a DT cord-010027-r0tl01kq 745 26 probability probability NN cord-010027-r0tl01kq 745 27 basis basis NN cord-010027-r0tl01kq 745 28 for for IN cord-010027-r0tl01kq 745 29 prediction prediction NN cord-010027-r0tl01kq 745 30 of of IN cord-010027-r0tl01kq 745 31 axillary axillary JJ cord-010027-r0tl01kq 745 32 nodal nodal JJ cord-010027-r0tl01kq 745 33 involvement involvement NN cord-010027-r0tl01kq 745 34 ; ; , cord-010027-r0tl01kq 745 35 dependent dependent JJ cord-010027-r0tl01kq 745 36 on on IN cord-010027-r0tl01kq 745 37 the the DT cord-010027-r0tl01kq 745 38 qPCR qpcr JJ cord-010027-r0tl01kq 745 39 cut cut VBN cord-010027-r0tl01kq 745 40 offs off NNS cord-010027-r0tl01kq 745 41 . . . cord-010027-r0tl01kq 746 1 This this DT cord-010027-r0tl01kq 746 2 gives give VBZ cord-010027-r0tl01kq 746 3 the the DT cord-010027-r0tl01kq 746 4 patient patient NN cord-010027-r0tl01kq 746 5 and and CC cord-010027-r0tl01kq 746 6 surgeon surgeon NN cord-010027-r0tl01kq 746 7 a a DT cord-010027-r0tl01kq 746 8 statistical statistical JJ cord-010027-r0tl01kq 746 9 basis basis NN cord-010027-r0tl01kq 746 10 for for IN cord-010027-r0tl01kq 746 11 determining determine VBG cord-010027-r0tl01kq 746 12 the the DT cord-010027-r0tl01kq 746 13 likelihood likelihood NN cord-010027-r0tl01kq 746 14 of of IN cord-010027-r0tl01kq 746 15 other other JJ cord-010027-r0tl01kq 746 16 axillary axillary JJ cord-010027-r0tl01kq 746 17 nodal nodal JJ cord-010027-r0tl01kq 746 18 disease disease NN cord-010027-r0tl01kq 746 19 . . . cord-010027-r0tl01kq 747 1 Sequencing sequencing NN cord-010027-r0tl01kq 747 2 of of IN cord-010027-r0tl01kq 747 3 the the DT cord-010027-r0tl01kq 747 4 BRCA1 BRCA1 NNP cord-010027-r0tl01kq 747 5 and and CC cord-010027-r0tl01kq 747 6 BRCA2 BRCA2 NNP cord-010027-r0tl01kq 747 7 genes gene NNS cord-010027-r0tl01kq 747 8 has have VBZ cord-010027-r0tl01kq 747 9 long long RB cord-010027-r0tl01kq 747 10 been be VBN cord-010027-r0tl01kq 747 11 used use VBN cord-010027-r0tl01kq 747 12 in in IN cord-010027-r0tl01kq 747 13 genetics genetics NN cord-010027-r0tl01kq 747 14 laboratories laboratory NNS cord-010027-r0tl01kq 747 15 to to TO cord-010027-r0tl01kq 747 16 identify identify VB cord-010027-r0tl01kq 747 17 cases case NNS cord-010027-r0tl01kq 747 18 of of IN cord-010027-r0tl01kq 747 19 familial familial JJ cord-010027-r0tl01kq 747 20 breast breast NN cord-010027-r0tl01kq 747 21 and and CC cord-010027-r0tl01kq 747 22 ovarian ovarian JJ cord-010027-r0tl01kq 747 23 cancer cancer NN cord-010027-r0tl01kq 747 24 . . . cord-010027-r0tl01kq 748 1 However however RB cord-010027-r0tl01kq 748 2 , , , cord-010027-r0tl01kq 748 3 the the DT cord-010027-r0tl01kq 748 4 advent advent NN cord-010027-r0tl01kq 748 5 of of IN cord-010027-r0tl01kq 748 6 chemotherapy chemotherapy NN cord-010027-r0tl01kq 748 7 for for IN cord-010027-r0tl01kq 748 8 ovarian ovarian JJ cord-010027-r0tl01kq 748 9 cancer cancer NN cord-010027-r0tl01kq 748 10 based base VBN cord-010027-r0tl01kq 748 11 on on IN cord-010027-r0tl01kq 748 12 PARP PARP NNP cord-010027-r0tl01kq 748 13 inhibitors inhibitor NNS cord-010027-r0tl01kq 748 14 , , , cord-010027-r0tl01kq 748 15 which which WDT cord-010027-r0tl01kq 748 16 requires require VBZ cord-010027-r0tl01kq 748 17 the the DT cord-010027-r0tl01kq 748 18 presence presence NN cord-010027-r0tl01kq 748 19 of of IN cord-010027-r0tl01kq 748 20 a a DT cord-010027-r0tl01kq 748 21 BRCA1 BRCA1 NNP cord-010027-r0tl01kq 748 22 or or CC cord-010027-r0tl01kq 748 23 BRCA2 brca2 NN cord-010027-r0tl01kq 748 24 mutation mutation NN cord-010027-r0tl01kq 748 25 , , , cord-010027-r0tl01kq 748 26 is be VBZ cord-010027-r0tl01kq 748 27 turning turn VBG cord-010027-r0tl01kq 748 28 this this DT cord-010027-r0tl01kq 748 29 specialist specialist JJ cord-010027-r0tl01kq 748 30 test test NN cord-010027-r0tl01kq 748 31 into into IN cord-010027-r0tl01kq 748 32 a a DT cord-010027-r0tl01kq 748 33 commonly commonly RB cord-010027-r0tl01kq 748 34 - - HYPH cord-010027-r0tl01kq 748 35 applied apply VBN cord-010027-r0tl01kq 748 36 companion companion NN cord-010027-r0tl01kq 748 37 diagnostic diagnostic JJ cord-010027-r0tl01kq 748 38 . . . cord-010027-r0tl01kq 749 1 At at IN cord-010027-r0tl01kq 749 2 the the DT cord-010027-r0tl01kq 749 3 same same JJ cord-010027-r0tl01kq 749 4 time time NN cord-010027-r0tl01kq 749 5 , , , cord-010027-r0tl01kq 749 6 the the DT cord-010027-r0tl01kq 749 7 introduction introduction NN cord-010027-r0tl01kq 749 8 of of IN cord-010027-r0tl01kq 749 9 new new JJ cord-010027-r0tl01kq 749 10 DNA dna NN cord-010027-r0tl01kq 749 11 sequencing sequencing NN cord-010027-r0tl01kq 749 12 technologies technology NNS cord-010027-r0tl01kq 749 13 is be VBZ cord-010027-r0tl01kq 749 14 posing pose VBG cord-010027-r0tl01kq 749 15 challenges challenge NNS cord-010027-r0tl01kq 749 16 even even RB cord-010027-r0tl01kq 749 17 for for IN cord-010027-r0tl01kq 749 18 experienced experienced JJ cord-010027-r0tl01kq 749 19 genetics genetics NN cord-010027-r0tl01kq 749 20 laboratories laboratory NNS cord-010027-r0tl01kq 749 21 . . . cord-010027-r0tl01kq 750 1 EMQN EMQN NNP cord-010027-r0tl01kq 750 2 has have VBZ cord-010027-r0tl01kq 750 3 been be VBN cord-010027-r0tl01kq 750 4 providing provide VBG cord-010027-r0tl01kq 750 5 EQA EQA NNP cord-010027-r0tl01kq 750 6 of of IN cord-010027-r0tl01kq 750 7 BRCA1 BRCA1 NNP cord-010027-r0tl01kq 750 8 and and CC cord-010027-r0tl01kq 750 9 BRCA2 BRCA2 NNP cord-010027-r0tl01kq 751 1 gene gene NN cord-010027-r0tl01kq 751 2 sequencing sequence VBG cord-010027-r0tl01kq 751 3 world world NN cord-010027-r0tl01kq 751 4 - - HYPH cord-010027-r0tl01kq 751 5 wide wide RB cord-010027-r0tl01kq 751 6 for for IN cord-010027-r0tl01kq 751 7 15 15 CD cord-010027-r0tl01kq 751 8 years year NNS cord-010027-r0tl01kq 751 9 . . . cord-010027-r0tl01kq 752 1 The the DT cord-010027-r0tl01kq 752 2 rate rate NN cord-010027-r0tl01kq 752 3 of of IN cord-010027-r0tl01kq 752 4 serious serious JJ cord-010027-r0tl01kq 752 5 diagnostic diagnostic JJ cord-010027-r0tl01kq 752 6 errors error NNS cord-010027-r0tl01kq 752 7 has have VBZ cord-010027-r0tl01kq 752 8 varied vary VBN cord-010027-r0tl01kq 752 9 from from IN cord-010027-r0tl01kq 752 10 year year NN cord-010027-r0tl01kq 752 11 to to IN cord-010027-r0tl01kq 752 12 year year NN cord-010027-r0tl01kq 752 13 , , , cord-010027-r0tl01kq 752 14 but but CC cord-010027-r0tl01kq 752 15 the the DT cord-010027-r0tl01kq 752 16 mean mean NN cord-010027-r0tl01kq 752 17 has have VBZ cord-010027-r0tl01kq 752 18 hovered hover VBN cord-010027-r0tl01kq 752 19 stubbornly stubbornly RB cord-010027-r0tl01kq 752 20 around around IN cord-010027-r0tl01kq 752 21 3 3 CD cord-010027-r0tl01kq 752 22 % % NN cord-010027-r0tl01kq 752 23 . . . cord-010027-r0tl01kq 753 1 In in IN cord-010027-r0tl01kq 753 2 EQA EQA NNP cord-010027-r0tl01kq 753 3 , , , cord-010027-r0tl01kq 753 4 just just RB cord-010027-r0tl01kq 753 5 3 3 CD cord-010027-r0tl01kq 753 6 samples sample NNS cord-010027-r0tl01kq 753 7 per per IN cord-010027-r0tl01kq 753 8 year year NN cord-010027-r0tl01kq 753 9 are be VBP cord-010027-r0tl01kq 753 10 sent send VBN cord-010027-r0tl01kq 753 11 out out RP cord-010027-r0tl01kq 753 12 , , , cord-010027-r0tl01kq 753 13 and and CC cord-010027-r0tl01kq 753 14 the the DT cord-010027-r0tl01kq 753 15 quality quality NN cord-010027-r0tl01kq 753 16 and and CC cord-010027-r0tl01kq 753 17 experience experience NN cord-010027-r0tl01kq 753 18 of of IN cord-010027-r0tl01kq 753 19 participating participate VBG cord-010027-r0tl01kq 753 20 laboratories laboratory NNS cord-010027-r0tl01kq 753 21 varies vary VBZ cord-010027-r0tl01kq 753 22 greatly greatly RB cord-010027-r0tl01kq 753 23 . . . cord-010027-r0tl01kq 754 1 We -PRON- PRP cord-010027-r0tl01kq 754 2 recently recently RB cord-010027-r0tl01kq 754 3 carried carry VBD cord-010027-r0tl01kq 754 4 out out RP cord-010027-r0tl01kq 754 5 a a DT cord-010027-r0tl01kq 754 6 collaborative collaborative JJ cord-010027-r0tl01kq 754 7 study study NN cord-010027-r0tl01kq 754 8 to to TO cord-010027-r0tl01kq 754 9 measure measure VB cord-010027-r0tl01kq 754 10 the the DT cord-010027-r0tl01kq 754 11 quality quality NN cord-010027-r0tl01kq 754 12 of of IN cord-010027-r0tl01kq 754 13 BRCA BRCA NNP cord-010027-r0tl01kq 754 14 gene gene NN cord-010027-r0tl01kq 754 15 sequencing sequencing NN cord-010027-r0tl01kq 754 16 by by IN cord-010027-r0tl01kq 754 17 traditional traditional JJ cord-010027-r0tl01kq 754 18 and and CC cord-010027-r0tl01kq 754 19 new new JJ cord-010027-r0tl01kq 754 20 methods method NNS cord-010027-r0tl01kq 754 21 in in IN cord-010027-r0tl01kq 754 22 20 20 CD cord-010027-r0tl01kq 754 23 experienced experienced JJ cord-010027-r0tl01kq 754 24 , , , cord-010027-r0tl01kq 754 25 expert expert NN cord-010027-r0tl01kq 754 26 laboratories laboratory NNS cord-010027-r0tl01kq 754 27 from from IN cord-010027-r0tl01kq 754 28 11 11 CD cord-010027-r0tl01kq 754 29 countries country NNS cord-010027-r0tl01kq 754 30 . . . cord-010027-r0tl01kq 755 1 Ten ten CD cord-010027-r0tl01kq 755 2 DNA dna NN cord-010027-r0tl01kq 755 3 samples sample NNS cord-010027-r0tl01kq 755 4 ( ( -LRB- cord-010027-r0tl01kq 755 5 8 8 CD cord-010027-r0tl01kq 755 6 with with IN cord-010027-r0tl01kq 755 7 pathogenic pathogenic JJ cord-010027-r0tl01kq 755 8 mutations mutation NNS cord-010027-r0tl01kq 755 9 , , , cord-010027-r0tl01kq 755 10 2 2 CD cord-010027-r0tl01kq 755 11 with with IN cord-010027-r0tl01kq 755 12 normal normal JJ cord-010027-r0tl01kq 755 13 DNA dna NN cord-010027-r0tl01kq 755 14 sequence sequence NN cord-010027-r0tl01kq 755 15 ) ) -RRB- cord-010027-r0tl01kq 755 16 were be VBD cord-010027-r0tl01kq 755 17 sent send VBN cord-010027-r0tl01kq 755 18 to to IN cord-010027-r0tl01kq 755 19 each each DT cord-010027-r0tl01kq 755 20 laboratory laboratory NN cord-010027-r0tl01kq 755 21 . . . cord-010027-r0tl01kq 756 1 Ten ten CD cord-010027-r0tl01kq 756 2 labs lab NNS cord-010027-r0tl01kq 756 3 used use VBD cord-010027-r0tl01kq 756 4 next next JJ cord-010027-r0tl01kq 756 5 - - HYPH cord-010027-r0tl01kq 756 6 generation generation NN cord-010027-r0tl01kq 756 7 sequencing sequencing NN cord-010027-r0tl01kq 756 8 ( ( -LRB- cord-010027-r0tl01kq 756 9 NGS NGS NNP cord-010027-r0tl01kq 756 10 ) ) -RRB- cord-010027-r0tl01kq 756 11 alone alone RB cord-010027-r0tl01kq 756 12 , , , cord-010027-r0tl01kq 756 13 3 3 CD cord-010027-r0tl01kq 756 14 used use VBD cord-010027-r0tl01kq 756 15 Sanger Sanger NNP cord-010027-r0tl01kq 756 16 sequencing sequencing NN cord-010027-r0tl01kq 756 17 alone alone RB cord-010027-r0tl01kq 756 18 , , , cord-010027-r0tl01kq 756 19 and and CC cord-010027-r0tl01kq 756 20 the the DT cord-010027-r0tl01kq 756 21 others other NNS cord-010027-r0tl01kq 756 22 used use VBD cord-010027-r0tl01kq 756 23 combinations combination NNS cord-010027-r0tl01kq 756 24 of of IN cord-010027-r0tl01kq 756 25 Sanger Sanger NNP cord-010027-r0tl01kq 756 26 sequencing sequencing NN cord-010027-r0tl01kq 756 27 , , , cord-010027-r0tl01kq 756 28 NGS NGS NNP cord-010027-r0tl01kq 756 29 , , , cord-010027-r0tl01kq 756 30 MLPA MLPA NNP cord-010027-r0tl01kq 756 31 and and CC cord-010027-r0tl01kq 756 32 other other JJ cord-010027-r0tl01kq 756 33 technologies technology NNS cord-010027-r0tl01kq 756 34 . . . cord-010027-r0tl01kq 757 1 Seventeen seventeen CD cord-010027-r0tl01kq 757 2 ( ( -LRB- cord-010027-r0tl01kq 757 3 85 85 CD cord-010027-r0tl01kq 757 4 % % NN cord-010027-r0tl01kq 757 5 ) ) -RRB- cord-010027-r0tl01kq 757 6 of of IN cord-010027-r0tl01kq 757 7 labs lab NNS cord-010027-r0tl01kq 757 8 identified identify VBD cord-010027-r0tl01kq 757 9 all all DT cord-010027-r0tl01kq 757 10 clinically clinically RB cord-010027-r0tl01kq 757 11 - - HYPH cord-010027-r0tl01kq 757 12 significant significant JJ cord-010027-r0tl01kq 757 13 variants variant NNS cord-010027-r0tl01kq 757 14 on on IN cord-010027-r0tl01kq 757 15 all all DT cord-010027-r0tl01kq 757 16 10 10 CD cord-010027-r0tl01kq 757 17 samples sample NNS cord-010027-r0tl01kq 757 18 . . . cord-010027-r0tl01kq 758 1 Four four CD cord-010027-r0tl01kq 758 2 false false JJ cord-010027-r0tl01kq 758 3 negative negative JJ cord-010027-r0tl01kq 758 4 results result NNS cord-010027-r0tl01kq 758 5 were be VBD cord-010027-r0tl01kq 758 6 reported report VBN cord-010027-r0tl01kq 758 7 by by IN cord-010027-r0tl01kq 758 8 3 3 CD cord-010027-r0tl01kq 758 9 labs lab NNS cord-010027-r0tl01kq 758 10 . . . cord-010027-r0tl01kq 759 1 Two two CD cord-010027-r0tl01kq 759 2 were be VBD cord-010027-r0tl01kq 759 3 due due JJ cord-010027-r0tl01kq 759 4 to to IN cord-010027-r0tl01kq 759 5 deficiencies deficiency NNS cord-010027-r0tl01kq 759 6 in in IN cord-010027-r0tl01kq 759 7 the the DT cord-010027-r0tl01kq 759 8 bioinformatics bioinformatics NN cord-010027-r0tl01kq 759 9 pipeline pipeline NN cord-010027-r0tl01kq 759 10 of of IN cord-010027-r0tl01kq 759 11 the the DT cord-010027-r0tl01kq 759 12 NGS NGS NNP cord-010027-r0tl01kq 759 13 process process NN cord-010027-r0tl01kq 759 14 , , , cord-010027-r0tl01kq 759 15 while while IN cord-010027-r0tl01kq 759 16 2 2 CD cord-010027-r0tl01kq 759 17 were be VBD cord-010027-r0tl01kq 759 18 attributed attribute VBN cord-010027-r0tl01kq 759 19 to to IN cord-010027-r0tl01kq 759 20 a a DT cord-010027-r0tl01kq 759 21 sample sample NN cord-010027-r0tl01kq 759 22 swap swap NN cord-010027-r0tl01kq 759 23 , , , cord-010027-r0tl01kq 759 24 and and CC cord-010027-r0tl01kq 759 25 incorrect incorrect JJ cord-010027-r0tl01kq 759 26 interpretation interpretation NN cord-010027-r0tl01kq 759 27 of of IN cord-010027-r0tl01kq 759 28 a a DT cord-010027-r0tl01kq 759 29 melting melting NN cord-010027-r0tl01kq 759 30 profile profile NN cord-010027-r0tl01kq 759 31 . . . cord-010027-r0tl01kq 760 1 No no DT cord-010027-r0tl01kq 760 2 significant significant JJ cord-010027-r0tl01kq 760 3 trend trend NN cord-010027-r0tl01kq 760 4 was be VBD cord-010027-r0tl01kq 760 5 identified identify VBN cord-010027-r0tl01kq 760 6 with with IN cord-010027-r0tl01kq 760 7 respect respect NN cord-010027-r0tl01kq 760 8 to to IN cord-010027-r0tl01kq 760 9 the the DT cord-010027-r0tl01kq 760 10 genotyping genotyping NN cord-010027-r0tl01kq 760 11 accuracy accuracy NN cord-010027-r0tl01kq 760 12 of of IN cord-010027-r0tl01kq 760 13 the the DT cord-010027-r0tl01kq 760 14 different different JJ cord-010027-r0tl01kq 760 15 methodologies methodology NNS cord-010027-r0tl01kq 760 16 used use VBN cord-010027-r0tl01kq 760 17 . . . cord-010027-r0tl01kq 761 1 The the DT cord-010027-r0tl01kq 761 2 observed observed JJ cord-010027-r0tl01kq 761 3 error error NN cord-010027-r0tl01kq 761 4 rate rate NN cord-010027-r0tl01kq 761 5 of of IN cord-010027-r0tl01kq 761 6 2 2 CD cord-010027-r0tl01kq 761 7 % % NN cord-010027-r0tl01kq 761 8 amongst amongst IN cord-010027-r0tl01kq 761 9 expert expert JJ cord-010027-r0tl01kq 761 10 laboratories laboratory NNS cord-010027-r0tl01kq 761 11 indicates indicate VBZ cord-010027-r0tl01kq 761 12 the the DT cord-010027-r0tl01kq 761 13 complex complex JJ cord-010027-r0tl01kq 761 14 and and CC cord-010027-r0tl01kq 761 15 challenging challenging JJ cord-010027-r0tl01kq 761 16 nature nature NN cord-010027-r0tl01kq 761 17 of of IN cord-010027-r0tl01kq 761 18 this this DT cord-010027-r0tl01kq 761 19 kind kind NN cord-010027-r0tl01kq 761 20 of of IN cord-010027-r0tl01kq 761 21 testing testing NN cord-010027-r0tl01kq 761 22 . . . cord-010027-r0tl01kq 762 1 Caution caution NN cord-010027-r0tl01kq 762 2 will will MD cord-010027-r0tl01kq 762 3 be be VB cord-010027-r0tl01kq 762 4 required require VBN cord-010027-r0tl01kq 762 5 when when WRB cord-010027-r0tl01kq 762 6 applying apply VBG cord-010027-r0tl01kq 762 7 these these DT cord-010027-r0tl01kq 762 8 technologies technology NNS cord-010027-r0tl01kq 762 9 to to IN cord-010027-r0tl01kq 762 10 sub sub VB cord-010027-r0tl01kq 762 11 - - JJ cord-010027-r0tl01kq 762 12 optimal optimal JJ cord-010027-r0tl01kq 762 13 FFPE ffpe NN cord-010027-r0tl01kq 762 14 samples sample NNS cord-010027-r0tl01kq 762 15 in in IN cord-010027-r0tl01kq 762 16 Pathology Pathology NNP cord-010027-r0tl01kq 762 17 laboratories laboratory NNS cord-010027-r0tl01kq 762 18 . . . cord-010027-r0tl01kq 763 1 P p NN cord-010027-r0tl01kq 763 2 N n CD cord-010027-r0tl01kq 763 3 Wolstenholme Wolstenholme NNP cord-010027-r0tl01kq 763 4 1 1 CD cord-010027-r0tl01kq 763 5 ; ; : cord-010027-r0tl01kq 763 6 SJ SJ NNP cord-010027-r0tl01kq 763 7 Patton Patton NNP cord-010027-r0tl01kq 763 8 1 1 CD cord-010027-r0tl01kq 763 9 ; ; : cord-010027-r0tl01kq 763 10 Z Z NNP cord-010027-r0tl01kq 763 11 Deans Deans NNPS cord-010027-r0tl01kq 763 12 2 2 CD cord-010027-r0tl01kq 763 13 ; ; : cord-010027-r0tl01kq 763 14 S S NNP cord-010027-r0tl01kq 763 15 Abbs Abbs NNP cord-010027-r0tl01kq 763 16 3 3 CD cord-010027-r0tl01kq 763 17 ; ; : cord-010027-r0tl01kq 763 18 J J NNP cord-010027-r0tl01kq 763 19 Coxhead Coxhead NNP cord-010027-r0tl01kq 763 20 4 4 CD cord-010027-r0tl01kq 763 21 ; ; : cord-010027-r0tl01kq 763 22 K K NNP cord-010027-r0tl01kq 763 23 Brugger Brugger NNP cord-010027-r0tl01kq 763 24 3 3 CD cord-010027-r0tl01kq 763 25 ; ; : cord-010027-r0tl01kq 763 26 P P NNP cord-010027-r0tl01kq 763 27 Westwood Westwood NNP cord-010027-r0tl01kq 763 28 5 5 CD cord-010027-r0tl01kq 763 29 ; ; : cord-010027-r0tl01kq 763 30 K K NNP cord-010027-r0tl01kq 763 31 Thomson Thomson NNP cord-010027-r0tl01kq 763 32 6 6 CD cord-010027-r0tl01kq 763 33 ; ; : cord-010027-r0tl01kq 763 34 H H NNP cord-010027-r0tl01kq 763 35 Scheffer Scheffer NNP cord-010027-r0tl01kq 763 36 7 7 CD cord-010027-r0tl01kq 764 1 Next next JJ cord-010027-r0tl01kq 764 2 Generation generation NN cord-010027-r0tl01kq 764 3 Sequencing Sequencing NNP cord-010027-r0tl01kq 764 4 ( ( -LRB- cord-010027-r0tl01kq 764 5 NGS NGS NNP cord-010027-r0tl01kq 764 6 ) ) -RRB- cord-010027-r0tl01kq 764 7 is be VBZ cord-010027-r0tl01kq 764 8 increasingly increasingly RB cord-010027-r0tl01kq 764 9 being be VBG cord-010027-r0tl01kq 764 10 introduced introduce VBN cord-010027-r0tl01kq 764 11 into into IN cord-010027-r0tl01kq 764 12 clinical clinical JJ cord-010027-r0tl01kq 764 13 diagnostic diagnostic JJ cord-010027-r0tl01kq 764 14 laboratories laboratory NNS cord-010027-r0tl01kq 764 15 worldwide worldwide RB cord-010027-r0tl01kq 764 16 . . . cord-010027-r0tl01kq 765 1 The the DT cord-010027-r0tl01kq 765 2 huge huge JJ cord-010027-r0tl01kq 765 3 amount amount NN cord-010027-r0tl01kq 765 4 of of IN cord-010027-r0tl01kq 765 5 data datum NNS cord-010027-r0tl01kq 765 6 generated generate VBN cord-010027-r0tl01kq 765 7 by by IN cord-010027-r0tl01kq 765 8 NGS NGS NNP cord-010027-r0tl01kq 765 9 can can MD cord-010027-r0tl01kq 765 10 not not RB cord-010027-r0tl01kq 765 11 be be VB cord-010027-r0tl01kq 765 12 duplicated duplicate VBN cord-010027-r0tl01kq 765 13 by by IN cord-010027-r0tl01kq 765 14 alternative alternative JJ cord-010027-r0tl01kq 765 15 methods method NNS cord-010027-r0tl01kq 765 16 for for IN cord-010027-r0tl01kq 765 17 laboratories laboratory NNS cord-010027-r0tl01kq 765 18 to to TO cord-010027-r0tl01kq 765 19 internally internally RB cord-010027-r0tl01kq 765 20 validate validate VB cord-010027-r0tl01kq 765 21 all all DT cord-010027-r0tl01kq 765 22 results result NNS cord-010027-r0tl01kq 765 23 , , , cord-010027-r0tl01kq 765 24 therefore therefore RB cord-010027-r0tl01kq 765 25 external external JJ cord-010027-r0tl01kq 765 26 assessment assessment NN cord-010027-r0tl01kq 765 27 of of IN cord-010027-r0tl01kq 765 28 data datum NNS cord-010027-r0tl01kq 765 29 is be VBZ cord-010027-r0tl01kq 765 30 required require VBN cord-010027-r0tl01kq 765 31 . . . cord-010027-r0tl01kq 766 1 The the DT cord-010027-r0tl01kq 766 2 UK UK NNP cord-010027-r0tl01kq 766 3 National National NNP cord-010027-r0tl01kq 766 4 External External NNP cord-010027-r0tl01kq 766 5 Quality Quality NNP cord-010027-r0tl01kq 766 6 Assessment Assessment NNP cord-010027-r0tl01kq 766 7 Scheme Scheme NNP cord-010027-r0tl01kq 766 8 ( ( -LRB- cord-010027-r0tl01kq 766 9 UKNEQAS UKNEQAS NNP cord-010027-r0tl01kq 766 10 ) ) -RRB- cord-010027-r0tl01kq 766 11 for for IN cord-010027-r0tl01kq 766 12 Molecular Molecular NNP cord-010027-r0tl01kq 766 13 Genetics Genetics NNP cord-010027-r0tl01kq 766 14 and and CC cord-010027-r0tl01kq 766 15 the the DT cord-010027-r0tl01kq 766 16 European European NNP cord-010027-r0tl01kq 766 17 Molecular Molecular NNP cord-010027-r0tl01kq 766 18 Genetics Genetics NNP cord-010027-r0tl01kq 766 19 Quality Quality NNP cord-010027-r0tl01kq 766 20 Network Network NNP cord-010027-r0tl01kq 766 21 ( ( -LRB- cord-010027-r0tl01kq 766 22 EMQN EMQN NNP cord-010027-r0tl01kq 766 23 ) ) -RRB- cord-010027-r0tl01kq 766 24 have have VBP cord-010027-r0tl01kq 766 25 developed develop VBN cord-010027-r0tl01kq 766 26 a a DT cord-010027-r0tl01kq 766 27 joint joint JJ cord-010027-r0tl01kq 766 28 EQA eqa NN cord-010027-r0tl01kq 766 29 scheme scheme NN cord-010027-r0tl01kq 766 30 for for IN cord-010027-r0tl01kq 766 31 NGS NGS NNP cord-010027-r0tl01kq 766 32 , , , cord-010027-r0tl01kq 766 33 with with IN cord-010027-r0tl01kq 766 34 the the DT cord-010027-r0tl01kq 766 35 aims aim NNS cord-010027-r0tl01kq 766 36 to to TO cord-010027-r0tl01kq 766 37 : : : cord-010027-r0tl01kq 766 38 ( ( -LRB- cord-010027-r0tl01kq 766 39 a a LS cord-010027-r0tl01kq 766 40 ) ) -RRB- cord-010027-r0tl01kq 766 41 assess assess VB cord-010027-r0tl01kq 766 42 and and CC cord-010027-r0tl01kq 766 43 improve improve VB cord-010027-r0tl01kq 766 44 quality quality NN cord-010027-r0tl01kq 766 45 ; ; : cord-010027-r0tl01kq 766 46 ( ( -LRB- cord-010027-r0tl01kq 766 47 b b LS cord-010027-r0tl01kq 766 48 ) ) -RRB- cord-010027-r0tl01kq 766 49 enable enable VB cord-010027-r0tl01kq 766 50 laboratories laboratory NNS cord-010027-r0tl01kq 766 51 to to TO cord-010027-r0tl01kq 766 52 benchmark benchmark VB cord-010027-r0tl01kq 766 53 their -PRON- PRP$ cord-010027-r0tl01kq 766 54 NGS NGS NNP cord-010027-r0tl01kq 766 55 service service NN cord-010027-r0tl01kq 766 56 against against IN cord-010027-r0tl01kq 766 57 others other NNS cord-010027-r0tl01kq 766 58 and and CC cord-010027-r0tl01kq 766 59 against against IN cord-010027-r0tl01kq 766 60 best good JJS cord-010027-r0tl01kq 766 61 practice practice NN cord-010027-r0tl01kq 766 62 ; ; , cord-010027-r0tl01kq 766 63 ( ( -LRB- cord-010027-r0tl01kq 766 64 c c NN cord-010027-r0tl01kq 766 65 ) ) -RRB- cord-010027-r0tl01kq 766 66 work work NN cord-010027-r0tl01kq 766 67 towards towards IN cord-010027-r0tl01kq 766 68 consistency consistency NN cord-010027-r0tl01kq 766 69 of of IN cord-010027-r0tl01kq 766 70 reporting report VBG cord-010027-r0tl01kq 766 71 clinical clinical JJ cord-010027-r0tl01kq 766 72 results result NNS cord-010027-r0tl01kq 766 73 generated generate VBN cord-010027-r0tl01kq 766 74 by by IN cord-010027-r0tl01kq 766 75 NGS NGS NNP cord-010027-r0tl01kq 766 76 ; ; : cord-010027-r0tl01kq 766 77 and and CC cord-010027-r0tl01kq 766 78 ( ( -LRB- cord-010027-r0tl01kq 766 79 d d NN cord-010027-r0tl01kq 766 80 ) ) -RRB- cord-010027-r0tl01kq 766 81 contribute contribute VB cord-010027-r0tl01kq 766 82 towards towards IN cord-010027-r0tl01kq 766 83 best good JJS cord-010027-r0tl01kq 766 84 practice practice NN cord-010027-r0tl01kq 766 85 . . . cord-010027-r0tl01kq 767 1 EMQN EMQN NNP cord-010027-r0tl01kq 767 2 and and CC cord-010027-r0tl01kq 767 3 UKNEQAS ukneqa NNS cord-010027-r0tl01kq 767 4 offer offer VBP cord-010027-r0tl01kq 767 5 numerous numerous JJ cord-010027-r0tl01kq 767 6 disease disease NN cord-010027-r0tl01kq 767 7 - - HYPH cord-010027-r0tl01kq 767 8 specific specific JJ cord-010027-r0tl01kq 767 9 , , , cord-010027-r0tl01kq 767 10 molecular molecular JJ cord-010027-r0tl01kq 767 11 pathology pathology NN cord-010027-r0tl01kq 767 12 and and CC cord-010027-r0tl01kq 767 13 technical technical JJ cord-010027-r0tl01kq 767 14 EQA eqa NN cord-010027-r0tl01kq 767 15 schemes scheme NNS cord-010027-r0tl01kq 767 16 . . . cord-010027-r0tl01kq 768 1 The the DT cord-010027-r0tl01kq 768 2 objectives objective NNS cord-010027-r0tl01kq 768 3 for for IN cord-010027-r0tl01kq 768 4 developing develop VBG cord-010027-r0tl01kq 768 5 NGS NGS NNP cord-010027-r0tl01kq 768 6 EQA EQA NNP cord-010027-r0tl01kq 768 7 were be VBD cord-010027-r0tl01kq 768 8 to to TO cord-010027-r0tl01kq 768 9 make make VB cord-010027-r0tl01kq 768 10 it -PRON- PRP cord-010027-r0tl01kq 768 11 generic generic JJ cord-010027-r0tl01kq 768 12 ( ( -LRB- cord-010027-r0tl01kq 768 13 independent independent JJ cord-010027-r0tl01kq 768 14 of of IN cord-010027-r0tl01kq 768 15 genes gene NNS cord-010027-r0tl01kq 768 16 , , , cord-010027-r0tl01kq 768 17 diseases disease NNS cord-010027-r0tl01kq 768 18 , , , cord-010027-r0tl01kq 768 19 platforms platform NNS cord-010027-r0tl01kq 768 20 , , , cord-010027-r0tl01kq 768 21 and and CC cord-010027-r0tl01kq 768 22 testing testing NN cord-010027-r0tl01kq 768 23 context context NN cord-010027-r0tl01kq 768 24 ( ( -LRB- cord-010027-r0tl01kq 768 25 e.g e.g FW cord-010027-r0tl01kq 768 26 , , , cord-010027-r0tl01kq 768 27 . . . cord-010027-r0tl01kq 769 1 Somatic somatic JJ cord-010027-r0tl01kq 769 2 , , , cord-010027-r0tl01kq 769 3 germline germline JJ cord-010027-r0tl01kq 769 4 etc etc FW cord-010027-r0tl01kq 769 5 ) ) -RRB- cord-010027-r0tl01kq 769 6 ) ) -RRB- cord-010027-r0tl01kq 769 7 and and CC cord-010027-r0tl01kq 769 8 applicable applicable JJ cord-010027-r0tl01kq 769 9 all all DT cord-010027-r0tl01kq 769 10 users user NNS cord-010027-r0tl01kq 769 11 . . . cord-010027-r0tl01kq 770 1 Two two CD cord-010027-r0tl01kq 770 2 pilot pilot NN cord-010027-r0tl01kq 770 3 EQAs eqa NNS cord-010027-r0tl01kq 770 4 have have VBP cord-010027-r0tl01kq 770 5 been be VBN cord-010027-r0tl01kq 770 6 run run VBN cord-010027-r0tl01kq 770 7 and and CC cord-010027-r0tl01kq 770 8 157 157 CD cord-010027-r0tl01kq 770 9 labs lab NNS cord-010027-r0tl01kq 770 10 from from IN cord-010027-r0tl01kq 770 11 32 32 CD cord-010027-r0tl01kq 770 12 countries country NNS cord-010027-r0tl01kq 770 13 participated participate VBD cord-010027-r0tl01kq 770 14 . . . cord-010027-r0tl01kq 771 1 These these DT cord-010027-r0tl01kq 771 2 labs lab NNS cord-010027-r0tl01kq 771 3 were be VBD cord-010027-r0tl01kq 771 4 sent send VBN cord-010027-r0tl01kq 771 5 a a DT cord-010027-r0tl01kq 771 6 genomic genomic JJ cord-010027-r0tl01kq 771 7 DNA dna NN cord-010027-r0tl01kq 771 8 sample sample NN cord-010027-r0tl01kq 771 9 and and CC cord-010027-r0tl01kq 771 10 asked ask VBD cord-010027-r0tl01kq 771 11 to to TO cord-010027-r0tl01kq 771 12 sequence sequence VB cord-010027-r0tl01kq 771 13 either either CC cord-010027-r0tl01kq 771 14 their -PRON- PRP$ cord-010027-r0tl01kq 771 15 smallest small JJS cord-010027-r0tl01kq 771 16 gene gene NN cord-010027-r0tl01kq 771 17 panel panel NN cord-010027-r0tl01kq 771 18 or or CC cord-010027-r0tl01kq 771 19 largest large JJS cord-010027-r0tl01kq 771 20 single single JJ cord-010027-r0tl01kq 771 21 gene gene NN cord-010027-r0tl01kq 771 22 which which WDT cord-010027-r0tl01kq 771 23 the the DT cord-010027-r0tl01kq 771 24 lab lab NN cord-010027-r0tl01kq 771 25 tested test VBN cord-010027-r0tl01kq 771 26 , , , cord-010027-r0tl01kq 771 27 submit submit VBP cord-010027-r0tl01kq 771 28 technical technical JJ cord-010027-r0tl01kq 771 29 details detail NNS cord-010027-r0tl01kq 771 30 , , , cord-010027-r0tl01kq 771 31 and and CC cord-010027-r0tl01kq 771 32 genotypes genotype NNS cord-010027-r0tl01kq 771 33 at at IN cord-010027-r0tl01kq 771 34 known know VBN cord-010027-r0tl01kq 771 35 SNPs snp NNS cord-010027-r0tl01kq 771 36 . . . cord-010027-r0tl01kq 772 1 The the DT cord-010027-r0tl01kq 772 2 results result NNS cord-010027-r0tl01kq 772 3 were be VBD cord-010027-r0tl01kq 772 4 compared compare VBN cord-010027-r0tl01kq 772 5 against against IN cord-010027-r0tl01kq 772 6 a a DT cord-010027-r0tl01kq 772 7 " " `` cord-010027-r0tl01kq 772 8 consensus consensus NN cord-010027-r0tl01kq 772 9 EQA eqa NN cord-010027-r0tl01kq 772 10 genome genome NN cord-010027-r0tl01kq 772 11 " " '' cord-010027-r0tl01kq 772 12 established establish VBN cord-010027-r0tl01kq 772 13 by by IN cord-010027-r0tl01kq 772 14 multiple multiple JJ cord-010027-r0tl01kq 772 15 validations validation NNS cord-010027-r0tl01kq 772 16 of of IN cord-010027-r0tl01kq 772 17 the the DT cord-010027-r0tl01kq 772 18 DNA dna NN cord-010027-r0tl01kq 772 19 . . . cord-010027-r0tl01kq 773 1 12187 12187 CD cord-010027-r0tl01kq 773 2 different different JJ cord-010027-r0tl01kq 773 3 genes gene NNS cord-010027-r0tl01kq 773 4 were be VBD cord-010027-r0tl01kq 773 5 tested test VBN cord-010027-r0tl01kq 773 6 . . . cord-010027-r0tl01kq 774 1 Most Most JJS cord-010027-r0tl01kq 774 2 labs lab NNS cord-010027-r0tl01kq 774 3 are be VBP cord-010027-r0tl01kq 774 4 using use VBG cord-010027-r0tl01kq 774 5 small small JJ cord-010027-r0tl01kq 774 6 panel panel NN cord-010027-r0tl01kq 774 7 of of IN cord-010027-r0tl01kq 774 8 1 1 CD cord-010027-r0tl01kq 774 9 - - SYM cord-010027-r0tl01kq 774 10 10 10 CD cord-010027-r0tl01kq 774 11 genes gene NNS cord-010027-r0tl01kq 774 12 . . . cord-010027-r0tl01kq 775 1 60 60 CD cord-010027-r0tl01kq 775 2 % % NN cord-010027-r0tl01kq 775 3 of of IN cord-010027-r0tl01kq 775 4 all all DT cord-010027-r0tl01kq 775 5 variants variant NNS cord-010027-r0tl01kq 775 6 were be VBD cord-010027-r0tl01kq 775 7 detected detect VBN cord-010027-r0tl01kq 775 8 by by IN cord-010027-r0tl01kq 775 9 every every DT cord-010027-r0tl01kq 775 10 lab lab NN cord-010027-r0tl01kq 775 11 which which WDT cord-010027-r0tl01kq 775 12 tested test VBD cord-010027-r0tl01kq 775 13 for for IN cord-010027-r0tl01kq 775 14 them -PRON- PRP cord-010027-r0tl01kq 775 15 . . . cord-010027-r0tl01kq 776 1 A a DT cord-010027-r0tl01kq 776 2 detailed detailed JJ cord-010027-r0tl01kq 776 3 summary summary NN cord-010027-r0tl01kq 776 4 of of IN cord-010027-r0tl01kq 776 5 the the DT cord-010027-r0tl01kq 776 6 key key JJ cord-010027-r0tl01kq 776 7 findings finding NNS cord-010027-r0tl01kq 776 8 will will MD cord-010027-r0tl01kq 776 9 be be VB cord-010027-r0tl01kq 776 10 presented present VBN cord-010027-r0tl01kq 776 11 . . . cord-010027-r0tl01kq 777 1 Both both DT cord-010027-r0tl01kq 777 2 pilots pilot NNS cord-010027-r0tl01kq 777 3 have have VBP cord-010027-r0tl01kq 777 4 proved prove VBN cord-010027-r0tl01kq 777 5 to to TO cord-010027-r0tl01kq 777 6 be be VB cord-010027-r0tl01kq 777 7 challenging challenge VBG cord-010027-r0tl01kq 777 8 to to TO cord-010027-r0tl01kq 777 9 meet meet VB cord-010027-r0tl01kq 777 10 our -PRON- PRP$ cord-010027-r0tl01kq 777 11 objectives objective NNS cord-010027-r0tl01kq 777 12 , , , cord-010027-r0tl01kq 777 13 however however RB cord-010027-r0tl01kq 777 14 the the DT cord-010027-r0tl01kq 777 15 results result NNS cord-010027-r0tl01kq 777 16 have have VBP cord-010027-r0tl01kq 777 17 enabled enable VBN cord-010027-r0tl01kq 777 18 clinical clinical JJ cord-010027-r0tl01kq 777 19 diagnostic diagnostic JJ cord-010027-r0tl01kq 777 20 labs lab NNS cord-010027-r0tl01kq 777 21 to to TO cord-010027-r0tl01kq 777 22 start start VB cord-010027-r0tl01kq 777 23 to to TO cord-010027-r0tl01kq 777 24 address address VB cord-010027-r0tl01kq 777 25 the the DT cord-010027-r0tl01kq 777 26 quality quality NN cord-010027-r0tl01kq 777 27 of of IN cord-010027-r0tl01kq 777 28 their -PRON- PRP$ cord-010027-r0tl01kq 777 29 NGS NGS NNP cord-010027-r0tl01kq 777 30 testing testing NN cord-010027-r0tl01kq 777 31 . . . cord-010027-r0tl01kq 778 1 Tumours tumour NNS cord-010027-r0tl01kq 778 2 invade invade VBP cord-010027-r0tl01kq 778 3 the the DT cord-010027-r0tl01kq 778 4 vasculature vasculature NN cord-010027-r0tl01kq 778 5 , , , cord-010027-r0tl01kq 778 6 which which WDT cord-010027-r0tl01kq 778 7 transports transport VBZ cord-010027-r0tl01kq 778 8 circulating circulate VBG cord-010027-r0tl01kq 778 9 tumour tumour NN cord-010027-r0tl01kq 778 10 cells cell NNS cord-010027-r0tl01kq 778 11 ( ( -LRB- cord-010027-r0tl01kq 778 12 CTCs ctc NNS cord-010027-r0tl01kq 778 13 ) ) -RRB- cord-010027-r0tl01kq 778 14 to to IN cord-010027-r0tl01kq 778 15 distant distant JJ cord-010027-r0tl01kq 778 16 sites site NNS cord-010027-r0tl01kq 778 17 enabling enable VBG cord-010027-r0tl01kq 778 18 growth growth NN cord-010027-r0tl01kq 778 19 of of IN cord-010027-r0tl01kq 778 20 secondary secondary JJ cord-010027-r0tl01kq 778 21 tumours tumour NNS cord-010027-r0tl01kq 778 22 . . . cord-010027-r0tl01kq 779 1 CTCs ctc NNS cord-010027-r0tl01kq 779 2 hold hold VBP cord-010027-r0tl01kq 779 3 the the DT cord-010027-r0tl01kq 779 4 potential potential NN cord-010027-r0tl01kq 779 5 to to TO cord-010027-r0tl01kq 779 6 monitor monitor VB cord-010027-r0tl01kq 779 7 : : : cord-010027-r0tl01kq 779 8 therapeutic therapeutic JJ cord-010027-r0tl01kq 779 9 response response NN cord-010027-r0tl01kq 779 10 , , , cord-010027-r0tl01kq 779 11 emergent emergent JJ cord-010027-r0tl01kq 779 12 mutations mutation NNS cord-010027-r0tl01kq 779 13 and and CC cord-010027-r0tl01kq 779 14 act act VB cord-010027-r0tl01kq 779 15 as as IN cord-010027-r0tl01kq 779 16 a a DT cord-010027-r0tl01kq 779 17 screening screening NN cord-010027-r0tl01kq 779 18 tool tool NN cord-010027-r0tl01kq 779 19 for for IN cord-010027-r0tl01kq 779 20 the the DT cord-010027-r0tl01kq 779 21 early early JJ cord-010027-r0tl01kq 779 22 detection detection NN cord-010027-r0tl01kq 779 23 of of IN cord-010027-r0tl01kq 779 24 cancer cancer NN cord-010027-r0tl01kq 779 25 . . . cord-010027-r0tl01kq 780 1 There there EX cord-010027-r0tl01kq 780 2 are be VBP cord-010027-r0tl01kq 780 3 numerous numerous JJ cord-010027-r0tl01kq 780 4 methods method NNS cord-010027-r0tl01kq 780 5 to to TO cord-010027-r0tl01kq 780 6 isolate isolate VB cord-010027-r0tl01kq 780 7 CTCs ctc NNS cord-010027-r0tl01kq 780 8 . . . cord-010027-r0tl01kq 781 1 Once once RB cord-010027-r0tl01kq 781 2 isolated isolate VBN cord-010027-r0tl01kq 781 3 , , , cord-010027-r0tl01kq 781 4 EpCAM EpCAM NNP cord-010027-r0tl01kq 781 5 and/or and/or CC cord-010027-r0tl01kq 781 6 panCK panck JJ cord-010027-r0tl01kq 781 7 positivity positivity NN cord-010027-r0tl01kq 781 8 and and CC cord-010027-r0tl01kq 781 9 CD45 CD45 NNP cord-010027-r0tl01kq 781 10 negativity negativity NN cord-010027-r0tl01kq 781 11 are be VBP cord-010027-r0tl01kq 781 12 used use VBN cord-010027-r0tl01kq 781 13 to to TO cord-010027-r0tl01kq 781 14 verify verify VB cord-010027-r0tl01kq 781 15 CTC CTC NNP cord-010027-r0tl01kq 781 16 status status NN cord-010027-r0tl01kq 781 17 . . . cord-010027-r0tl01kq 782 1 However however RB cord-010027-r0tl01kq 782 2 , , , cord-010027-r0tl01kq 782 3 due due IN cord-010027-r0tl01kq 782 4 to to IN cord-010027-r0tl01kq 782 5 the the DT cord-010027-r0tl01kq 782 6 metastasis metastasis NN cord-010027-r0tl01kq 782 7 associated associate VBN cord-010027-r0tl01kq 782 8 process process NN cord-010027-r0tl01kq 782 9 of of IN cord-010027-r0tl01kq 782 10 Epithelial epithelial NN cord-010027-r0tl01kq 782 11 - - HYPH cord-010027-r0tl01kq 782 12 Mesenchymal Mesenchymal NNP cord-010027-r0tl01kq 782 13 Transition Transition NNP cord-010027-r0tl01kq 782 14 , , , cord-010027-r0tl01kq 782 15 epithelial epithelial JJ cord-010027-r0tl01kq 782 16 markers marker NNS cord-010027-r0tl01kq 782 17 may may MD cord-010027-r0tl01kq 782 18 be be VB cord-010027-r0tl01kq 782 19 ineffective ineffective JJ cord-010027-r0tl01kq 782 20 at at IN cord-010027-r0tl01kq 782 21 identifying identify VBG cord-010027-r0tl01kq 782 22 all all DT cord-010027-r0tl01kq 782 23 CTCs ctc NNS cord-010027-r0tl01kq 782 24 . . . cord-010027-r0tl01kq 783 1 To to TO cord-010027-r0tl01kq 783 2 overcome overcome VB cord-010027-r0tl01kq 783 3 such such JJ cord-010027-r0tl01kq 783 4 protein protein NN cord-010027-r0tl01kq 783 5 marker marker NN cord-010027-r0tl01kq 783 6 based base VBN cord-010027-r0tl01kq 783 7 limitations limitation NNS cord-010027-r0tl01kq 783 8 , , , cord-010027-r0tl01kq 783 9 we -PRON- PRP cord-010027-r0tl01kq 783 10 have have VBP cord-010027-r0tl01kq 783 11 developed develop VBN cord-010027-r0tl01kq 783 12 a a DT cord-010027-r0tl01kq 783 13 novel novel JJ cord-010027-r0tl01kq 783 14 staining staining NN cord-010027-r0tl01kq 783 15 pipeline pipeline NN cord-010027-r0tl01kq 783 16 ( ( -LRB- cord-010027-r0tl01kq 783 17 CTC-5 CTC-5 NNP cord-010027-r0tl01kq 783 18 ) ) -RRB- cord-010027-r0tl01kq 783 19 that that WDT cord-010027-r0tl01kq 783 20 combines combine VBZ cord-010027-r0tl01kq 783 21 histochemical histochemical JJ cord-010027-r0tl01kq 783 22 staining staining NN cord-010027-r0tl01kq 783 23 ( ( -LRB- cord-010027-r0tl01kq 783 24 giemsa giemsa NNP cord-010027-r0tl01kq 783 25 ) ) -RRB- cord-010027-r0tl01kq 783 26 with with IN cord-010027-r0tl01kq 783 27 immunofluorescene immunofluorescene JJ cord-010027-r0tl01kq 783 28 ( ( -LRB- cord-010027-r0tl01kq 783 29 DAPI dapi FW cord-010027-r0tl01kq 783 30 , , , cord-010027-r0tl01kq 783 31 EpCAM EpCAM NNP cord-010027-r0tl01kq 783 32 / / SYM cord-010027-r0tl01kq 783 33 panCK panCK NNP cord-010027-r0tl01kq 783 34 , , , cord-010027-r0tl01kq 783 35 HER3 HER3 NNP cord-010027-r0tl01kq 783 36 and and CC cord-010027-r0tl01kq 783 37 CD45 CD45 NNP cord-010027-r0tl01kq 783 38 ) ) -RRB- cord-010027-r0tl01kq 783 39 staining staining NN cord-010027-r0tl01kq 783 40 and and CC cord-010027-r0tl01kq 783 41 whole whole JJ cord-010027-r0tl01kq 783 42 slide slide NN cord-010027-r0tl01kq 783 43 imaging imaging NN cord-010027-r0tl01kq 783 44 for for IN cord-010027-r0tl01kq 783 45 robust robust JJ cord-010027-r0tl01kq 783 46 identification identification NN cord-010027-r0tl01kq 783 47 , , , cord-010027-r0tl01kq 783 48 enumeration enumeration NN cord-010027-r0tl01kq 783 49 and and CC cord-010027-r0tl01kq 783 50 characterisation characterisation NN cord-010027-r0tl01kq 783 51 of of IN cord-010027-r0tl01kq 783 52 CTCs ctc NNS cord-010027-r0tl01kq 783 53 from from IN cord-010027-r0tl01kq 783 54 cancer cancer NN cord-010027-r0tl01kq 783 55 patients patient NNS cord-010027-r0tl01kq 783 56 . . . cord-010027-r0tl01kq 784 1 CTCs ctc NNS cord-010027-r0tl01kq 784 2 are be VBP cord-010027-r0tl01kq 784 3 isolated isolate VBN cord-010027-r0tl01kq 784 4 from from IN cord-010027-r0tl01kq 784 5 whole whole JJ cord-010027-r0tl01kq 784 6 blood blood NN cord-010027-r0tl01kq 784 7 using use VBG cord-010027-r0tl01kq 784 8 ScreenCell ScreenCell NNP cord-010027-r0tl01kq 784 9 Cyto Cyto NNP cord-010027-r0tl01kq 784 10 devices device NNS cord-010027-r0tl01kq 784 11 . . . cord-010027-r0tl01kq 785 1 Cyto Cyto NNP cord-010027-r0tl01kq 785 2 devices device NNS cord-010027-r0tl01kq 785 3 are be VBP cord-010027-r0tl01kq 785 4 then then RB cord-010027-r0tl01kq 785 5 slide slide NN cord-010027-r0tl01kq 785 6 mounted mount VBN cord-010027-r0tl01kq 785 7 , , , cord-010027-r0tl01kq 785 8 giemsa giemsa NNP cord-010027-r0tl01kq 785 9 stained stain VBN cord-010027-r0tl01kq 785 10 and and CC cord-010027-r0tl01kq 785 11 digitised digitised JJ cord-010027-r0tl01kq 785 12 . . . cord-010027-r0tl01kq 786 1 Giemsa Giemsa NNP cord-010027-r0tl01kq 786 2 Staining Staining NNP cord-010027-r0tl01kq 786 3 is be VBZ cord-010027-r0tl01kq 786 4 washed wash VBN cord-010027-r0tl01kq 786 5 out out RP cord-010027-r0tl01kq 786 6 and and CC cord-010027-r0tl01kq 786 7 slides slide NNS cord-010027-r0tl01kq 786 8 are be VBP cord-010027-r0tl01kq 786 9 immunofluorescently immunofluorescently RB cord-010027-r0tl01kq 786 10 stained stain VBN cord-010027-r0tl01kq 786 11 for for IN cord-010027-r0tl01kq 786 12 EpCAM EpCAM NNP cord-010027-r0tl01kq 786 13 / / SYM cord-010027-r0tl01kq 786 14 panCK panCK NNP cord-010027-r0tl01kq 786 15 , , , cord-010027-r0tl01kq 787 1 CD45 CD45 NNP cord-010027-r0tl01kq 787 2 , , , cord-010027-r0tl01kq 787 3 HER3 HER3 NNP cord-010027-r0tl01kq 787 4 and and CC cord-010027-r0tl01kq 787 5 counter counter NN cord-010027-r0tl01kq 787 6 stained stain VBN cord-010027-r0tl01kq 787 7 with with IN cord-010027-r0tl01kq 787 8 DAPI DAPI NNP cord-010027-r0tl01kq 787 9 . . . cord-010027-r0tl01kq 788 1 Fluorescently fluorescently RB cord-010027-r0tl01kq 788 2 stained stain VBN cord-010027-r0tl01kq 788 3 slides slide NNS cord-010027-r0tl01kq 788 4 are be VBP cord-010027-r0tl01kq 788 5 digitised digitised JJ cord-010027-r0tl01kq 788 6 . . . cord-010027-r0tl01kq 789 1 Giemsa Giemsa NNP cord-010027-r0tl01kq 789 2 stained stain VBD cord-010027-r0tl01kq 789 3 and and CC cord-010027-r0tl01kq 789 4 four four CD cord-010027-r0tl01kq 789 5 colour colour NN cord-010027-r0tl01kq 789 6 immunofluorescent immunofluorescent NN cord-010027-r0tl01kq 789 7 digital digital JJ cord-010027-r0tl01kq 789 8 slides slide NNS cord-010027-r0tl01kq 789 9 are be VBP cord-010027-r0tl01kq 789 10 processed process VBN cord-010027-r0tl01kq 789 11 in in IN cord-010027-r0tl01kq 789 12 silico silico NN cord-010027-r0tl01kq 789 13 generating generate VBG cord-010027-r0tl01kq 789 14 a a DT cord-010027-r0tl01kq 789 15 single single JJ cord-010027-r0tl01kq 789 16 z z NN cord-010027-r0tl01kq 789 17 - - HYPH cord-010027-r0tl01kq 789 18 stacked stack VBN cord-010027-r0tl01kq 789 19 digital digital JJ cord-010027-r0tl01kq 789 20 slide slide NN cord-010027-r0tl01kq 789 21 for for IN cord-010027-r0tl01kq 789 22 pathological pathological JJ cord-010027-r0tl01kq 789 23 assessment assessment NN cord-010027-r0tl01kq 789 24 . . . cord-010027-r0tl01kq 790 1 The the DT cord-010027-r0tl01kq 790 2 CTC-5 CTC-5 NNP cord-010027-r0tl01kq 790 3 staining staining NN cord-010027-r0tl01kq 790 4 pipeline pipeline NN cord-010027-r0tl01kq 790 5 has have VBZ cord-010027-r0tl01kq 790 6 been be VBN cord-010027-r0tl01kq 790 7 experimentally experimentally RB cord-010027-r0tl01kq 790 8 validated validate VBN cord-010027-r0tl01kq 790 9 via via IN cord-010027-r0tl01kq 790 10 CTC CTC NNP cord-010027-r0tl01kq 790 11 characterisation characterisation NN cord-010027-r0tl01kq 790 12 of of IN cord-010027-r0tl01kq 790 13 peripheral peripheral JJ cord-010027-r0tl01kq 790 14 blood blood NN cord-010027-r0tl01kq 790 15 from from IN cord-010027-r0tl01kq 790 16 Lung Lung NNP cord-010027-r0tl01kq 790 17 , , , cord-010027-r0tl01kq 790 18 Breast breast NN cord-010027-r0tl01kq 790 19 and and CC cord-010027-r0tl01kq 790 20 Ovarian ovarian JJ cord-010027-r0tl01kq 790 21 cancer cancer NN cord-010027-r0tl01kq 790 22 patients patient NNS cord-010027-r0tl01kq 790 23 , , , cord-010027-r0tl01kq 790 24 with with IN cord-010027-r0tl01kq 790 25 respect respect NN cord-010027-r0tl01kq 790 26 to to IN cord-010027-r0tl01kq 790 27 healthy healthy JJ cord-010027-r0tl01kq 790 28 donor donor NN cord-010027-r0tl01kq 790 29 and and CC cord-010027-r0tl01kq 790 30 spiked spike VBN cord-010027-r0tl01kq 790 31 - - HYPH cord-010027-r0tl01kq 790 32 in in RP cord-010027-r0tl01kq 790 33 controls control NNS cord-010027-r0tl01kq 790 34 . . . cord-010027-r0tl01kq 791 1 The the DT cord-010027-r0tl01kq 791 2 CTC-5 CTC-5 NNP cord-010027-r0tl01kq 791 3 pipeline pipeline NN cord-010027-r0tl01kq 791 4 overcomes overcome VBZ cord-010027-r0tl01kq 791 5 recognised recognise VBN cord-010027-r0tl01kq 791 6 weaknesses weakness NNS cord-010027-r0tl01kq 791 7 in in IN cord-010027-r0tl01kq 791 8 CTC CTC NNP cord-010027-r0tl01kq 791 9 characterisation characterisation NN cord-010027-r0tl01kq 791 10 . . . cord-010027-r0tl01kq 792 1 Histochemical Histochemical NNP cord-010027-r0tl01kq 792 2 staining staining NN cord-010027-r0tl01kq 792 3 is be VBZ cord-010027-r0tl01kq 792 4 added add VBN cord-010027-r0tl01kq 792 5 to to IN cord-010027-r0tl01kq 792 6 the the DT cord-010027-r0tl01kq 792 7 current current JJ cord-010027-r0tl01kq 792 8 gold gold NN cord-010027-r0tl01kq 792 9 standard standard NN cord-010027-r0tl01kq 792 10 of of IN cord-010027-r0tl01kq 792 11 EpCAM EpCAM NNP cord-010027-r0tl01kq 792 12 / / SYM cord-010027-r0tl01kq 792 13 panCK panCK NNP cord-010027-r0tl01kq 792 14 and and CC cord-010027-r0tl01kq 792 15 CD45 CD45 NNP cord-010027-r0tl01kq 792 16 staining staining NN cord-010027-r0tl01kq 792 17 , , , cord-010027-r0tl01kq 792 18 while while IN cord-010027-r0tl01kq 792 19 also also RB cord-010027-r0tl01kq 792 20 preserving preserve VBG cord-010027-r0tl01kq 792 21 a a DT cord-010027-r0tl01kq 792 22 fluorescent fluorescent JJ cord-010027-r0tl01kq 792 23 channel channel NN cord-010027-r0tl01kq 792 24 for for IN cord-010027-r0tl01kq 792 25 assessment assessment NN cord-010027-r0tl01kq 792 26 of of IN cord-010027-r0tl01kq 792 27 biomarker biomarker NN cord-010027-r0tl01kq 792 28 status status NN cord-010027-r0tl01kq 792 29 ( ( -LRB- cord-010027-r0tl01kq 792 30 e.g. e.g. IN cord-010027-r0tl01kq 792 31 HER3 HER3 NNP cord-010027-r0tl01kq 792 32 , , , cord-010027-r0tl01kq 792 33 apoptosis apoptosis NN cord-010027-r0tl01kq 792 34 or or CC cord-010027-r0tl01kq 792 35 platelet platelet NN cord-010027-r0tl01kq 792 36 cloaking cloaking NN cord-010027-r0tl01kq 792 37 ) ) -RRB- cord-010027-r0tl01kq 792 38 . . . cord-010027-r0tl01kq 793 1 Such such JJ cord-010027-r0tl01kq 793 2 advancements advancement NNS cord-010027-r0tl01kq 793 3 enable enable VBP cord-010027-r0tl01kq 793 4 robust robust JJ cord-010027-r0tl01kq 793 5 pathological pathological JJ cord-010027-r0tl01kq 793 6 assessment assessment NN cord-010027-r0tl01kq 793 7 of of IN cord-010027-r0tl01kq 793 8 CTCs ctc NNS cord-010027-r0tl01kq 793 9 in in IN cord-010027-r0tl01kq 793 10 the the DT cord-010027-r0tl01kq 793 11 clinic clinic NN cord-010027-r0tl01kq 793 12 . . . cord-010027-r0tl01kq 794 1 Thorough thorough JJ cord-010027-r0tl01kq 794 2 interrogation interrogation NN cord-010027-r0tl01kq 794 3 of of IN cord-010027-r0tl01kq 794 4 diseased diseased JJ cord-010027-r0tl01kq 794 5 tissue tissue NN cord-010027-r0tl01kq 794 6 requires require VBZ cord-010027-r0tl01kq 794 7 the the DT cord-010027-r0tl01kq 794 8 use use NN cord-010027-r0tl01kq 794 9 of of IN cord-010027-r0tl01kq 794 10 multiple multiple JJ cord-010027-r0tl01kq 794 11 biomarkers biomarker NNS cord-010027-r0tl01kq 794 12 in in IN cord-010027-r0tl01kq 794 13 order order NN cord-010027-r0tl01kq 794 14 to to TO cord-010027-r0tl01kq 794 15 investigate investigate VB cord-010027-r0tl01kq 794 16 biological biological JJ cord-010027-r0tl01kq 794 17 pathways pathway NNS cord-010027-r0tl01kq 794 18 . . . cord-010027-r0tl01kq 795 1 Unless unless IN cord-010027-r0tl01kq 795 2 fluorescent fluorescent JJ cord-010027-r0tl01kq 795 3 technology technology NN cord-010027-r0tl01kq 795 4 is be VBZ cord-010027-r0tl01kq 795 5 used use VBN cord-010027-r0tl01kq 795 6 , , , cord-010027-r0tl01kq 795 7 multiple multiple JJ cord-010027-r0tl01kq 795 8 sections section NNS cord-010027-r0tl01kq 795 9 are be VBP cord-010027-r0tl01kq 795 10 required require VBN cord-010027-r0tl01kq 795 11 from from IN cord-010027-r0tl01kq 795 12 each each DT cord-010027-r0tl01kq 795 13 tissue tissue NN cord-010027-r0tl01kq 795 14 block block NN cord-010027-r0tl01kq 795 15 as as IN cord-010027-r0tl01kq 795 16 each each DT cord-010027-r0tl01kq 795 17 section section NN cord-010027-r0tl01kq 795 18 can can MD cord-010027-r0tl01kq 795 19 only only RB cord-010027-r0tl01kq 795 20 be be VB cord-010027-r0tl01kq 795 21 tested test VBN cord-010027-r0tl01kq 795 22 for for IN cord-010027-r0tl01kq 795 23 a a DT cord-010027-r0tl01kq 795 24 limited limited JJ cord-010027-r0tl01kq 795 25 number number NN cord-010027-r0tl01kq 795 26 of of IN cord-010027-r0tl01kq 795 27 markers marker NNS cord-010027-r0tl01kq 795 28 . . . cord-010027-r0tl01kq 796 1 Histogenic Histogenic NNP cord-010027-r0tl01kq 796 2 Molecular Molecular NNP cord-010027-r0tl01kq 796 3 Mapping Mapping NNP cord-010027-r0tl01kq 796 4 ( ( -LRB- cord-010027-r0tl01kq 796 5 HMM HMM NNP cord-010027-r0tl01kq 796 6 ) ) -RRB- cord-010027-r0tl01kq 796 7 is be VBZ cord-010027-r0tl01kq 796 8 a a DT cord-010027-r0tl01kq 796 9 technique technique NN cord-010027-r0tl01kq 796 10 which which WDT cord-010027-r0tl01kq 796 11 used use VBD cord-010027-r0tl01kq 796 12 digitized digitized JJ cord-010027-r0tl01kq 796 13 images image NNS cord-010027-r0tl01kq 796 14 to to TO cord-010027-r0tl01kq 796 15 evaluate evaluate VB cord-010027-r0tl01kq 796 16 multiple multiple JJ cord-010027-r0tl01kq 796 17 biomarkers biomarker NNS cord-010027-r0tl01kq 796 18 . . . cord-010027-r0tl01kq 797 1 Although although IN cord-010027-r0tl01kq 797 2 each each DT cord-010027-r0tl01kq 797 3 section section NN cord-010027-r0tl01kq 797 4 cut cut VBN cord-010027-r0tl01kq 797 5 from from IN cord-010027-r0tl01kq 797 6 a a DT cord-010027-r0tl01kq 797 7 block block NN cord-010027-r0tl01kq 797 8 is be VBZ cord-010027-r0tl01kq 797 9 slightly slightly RB cord-010027-r0tl01kq 797 10 different different JJ cord-010027-r0tl01kq 797 11 from from IN cord-010027-r0tl01kq 797 12 the the DT cord-010027-r0tl01kq 797 13 immediately immediately RB cord-010027-r0tl01kq 797 14 preceding precede VBG cord-010027-r0tl01kq 797 15 section section NN cord-010027-r0tl01kq 797 16 , , , cord-010027-r0tl01kq 797 17 the the DT cord-010027-r0tl01kq 797 18 similarity similarity NN cord-010027-r0tl01kq 797 19 is be VBZ cord-010027-r0tl01kq 797 20 sufficient sufficient JJ cord-010027-r0tl01kq 797 21 to to TO cord-010027-r0tl01kq 797 22 allow allow VB cord-010027-r0tl01kq 797 23 non non JJ cord-010027-r0tl01kq 797 24 - - JJ cord-010027-r0tl01kq 797 25 linear linear JJ cord-010027-r0tl01kq 797 26 registration registration NN cord-010027-r0tl01kq 797 27 of of IN cord-010027-r0tl01kq 797 28 images image NNS cord-010027-r0tl01kq 797 29 of of IN cord-010027-r0tl01kq 797 30 successive successive JJ cord-010027-r0tl01kq 797 31 sections section NNS cord-010027-r0tl01kq 797 32 . . . cord-010027-r0tl01kq 798 1 If if IN cord-010027-r0tl01kq 798 2 the the DT cord-010027-r0tl01kq 798 3 order order NN cord-010027-r0tl01kq 798 4 is be VBZ cord-010027-r0tl01kq 798 5 known know VBN cord-010027-r0tl01kq 798 6 , , , cord-010027-r0tl01kq 798 7 multiple multiple JJ cord-010027-r0tl01kq 798 8 sections section NNS cord-010027-r0tl01kq 798 9 can can MD cord-010027-r0tl01kq 798 10 be be VB cord-010027-r0tl01kq 798 11 mapped map VBN cord-010027-r0tl01kq 798 12 onto onto IN cord-010027-r0tl01kq 798 13 each each DT cord-010027-r0tl01kq 798 14 other other JJ cord-010027-r0tl01kq 798 15 by by IN cord-010027-r0tl01kq 798 16 registering register VBG cord-010027-r0tl01kq 798 17 each each DT cord-010027-r0tl01kq 798 18 with with IN cord-010027-r0tl01kq 798 19 the the DT cord-010027-r0tl01kq 798 20 immediately immediately RB cord-010027-r0tl01kq 798 21 preceding precede VBG cord-010027-r0tl01kq 798 22 section section NN cord-010027-r0tl01kq 798 23 . . . cord-010027-r0tl01kq 799 1 This this DT cord-010027-r0tl01kq 799 2 allows allow VBZ cord-010027-r0tl01kq 799 3 several several JJ cord-010027-r0tl01kq 799 4 biomarkers biomarker NNS cord-010027-r0tl01kq 799 5 to to TO cord-010027-r0tl01kq 799 6 be be VB cord-010027-r0tl01kq 799 7 mapped map VBN cord-010027-r0tl01kq 799 8 into into IN cord-010027-r0tl01kq 799 9 a a DT cord-010027-r0tl01kq 799 10 single single JJ cord-010027-r0tl01kq 799 11 " " `` cord-010027-r0tl01kq 799 12 composite composite JJ cord-010027-r0tl01kq 799 13 " " '' cord-010027-r0tl01kq 799 14 section section NN cord-010027-r0tl01kq 799 15 thereby thereby RB cord-010027-r0tl01kq 799 16 giving give VBG cord-010027-r0tl01kq 799 17 a a DT cord-010027-r0tl01kq 799 18 representation representation NN cord-010027-r0tl01kq 799 19 of of IN cord-010027-r0tl01kq 799 20 the the DT cord-010027-r0tl01kq 799 21 pathways pathway NNS cord-010027-r0tl01kq 799 22 activated activate VBN cord-010027-r0tl01kq 799 23 / / SYM cord-010027-r0tl01kq 799 24 expressed express VBD cord-010027-r0tl01kq 799 25 in in IN cord-010027-r0tl01kq 799 26 the the DT cord-010027-r0tl01kq 799 27 tissue tissue NN cord-010027-r0tl01kq 799 28 . . . cord-010027-r0tl01kq 800 1 We -PRON- PRP cord-010027-r0tl01kq 800 2 used use VBD cord-010027-r0tl01kq 800 3 HMM HMM NNP cord-010027-r0tl01kq 800 4 to to TO cord-010027-r0tl01kq 800 5 investigate investigate VB cord-010027-r0tl01kq 800 6 the the DT cord-010027-r0tl01kq 800 7 mismatch mismatch NN cord-010027-r0tl01kq 800 8 repair repair NN cord-010027-r0tl01kq 800 9 pathway pathway NN cord-010027-r0tl01kq 800 10 in in IN cord-010027-r0tl01kq 800 11 colorectal colorectal JJ cord-010027-r0tl01kq 800 12 cancer cancer NN cord-010027-r0tl01kq 800 13 . . . cord-010027-r0tl01kq 801 1 Sequential sequential JJ cord-010027-r0tl01kq 801 2 tissue tissue NN cord-010027-r0tl01kq 801 3 sections section NNS cord-010027-r0tl01kq 801 4 were be VBD cord-010027-r0tl01kq 801 5 stained stain VBN cord-010027-r0tl01kq 801 6 for for IN cord-010027-r0tl01kq 801 7 MLH1 MLH1 NNP cord-010027-r0tl01kq 801 8 , , , cord-010027-r0tl01kq 801 9 PMS2 PMS2 NNP cord-010027-r0tl01kq 801 10 , , , cord-010027-r0tl01kq 801 11 MSH2 MSH2 NNP cord-010027-r0tl01kq 801 12 and and CC cord-010027-r0tl01kq 801 13 MSH6 MSH6 NNPS cord-010027-r0tl01kq 801 14 and and CC cord-010027-r0tl01kq 801 15 then then RB cord-010027-r0tl01kq 801 16 scanned scan VBD cord-010027-r0tl01kq 801 17 . . . cord-010027-r0tl01kq 802 1 Bespoke bespoke JJ cord-010027-r0tl01kq 802 2 computational computational JJ cord-010027-r0tl01kq 802 3 algorithms algorithm NNS cord-010027-r0tl01kq 802 4 were be VBD cord-010027-r0tl01kq 802 5 used use VBN cord-010027-r0tl01kq 802 6 for for IN cord-010027-r0tl01kq 802 7 image image NN cord-010027-r0tl01kq 802 8 registration registration NN cord-010027-r0tl01kq 802 9 and and CC cord-010027-r0tl01kq 802 10 composite composite JJ cord-010027-r0tl01kq 802 11 images image NNS cord-010027-r0tl01kq 802 12 were be VBD cord-010027-r0tl01kq 802 13 binned bin VBN cord-010027-r0tl01kq 802 14 as as IN cord-010027-r0tl01kq 802 15 either either DT cord-010027-r0tl01kq 802 16 " " `` cord-010027-r0tl01kq 802 17 mismatch mismatch NN cord-010027-r0tl01kq 802 18 repair repair NN cord-010027-r0tl01kq 802 19 proficient proficient JJ cord-010027-r0tl01kq 802 20 " " '' cord-010027-r0tl01kq 802 21 or or CC cord-010027-r0tl01kq 802 22 " " `` cord-010027-r0tl01kq 802 23 mismatch mismatch NN cord-010027-r0tl01kq 802 24 repair repair NN cord-010027-r0tl01kq 802 25 deficient deficient JJ cord-010027-r0tl01kq 802 26 " " '' cord-010027-r0tl01kq 802 27 . . . cord-010027-r0tl01kq 803 1 Validation validation NN cord-010027-r0tl01kq 803 2 of of IN cord-010027-r0tl01kq 803 3 each each DT cord-010027-r0tl01kq 803 4 category category NN cord-010027-r0tl01kq 803 5 could could MD cord-010027-r0tl01kq 803 6 be be VB cord-010027-r0tl01kq 803 7 obtained obtain VBN cord-010027-r0tl01kq 803 8 by by IN cord-010027-r0tl01kq 803 9 quantification quantification NN cord-010027-r0tl01kq 803 10 of of IN cord-010027-r0tl01kq 803 11 pixels pixel NNS cord-010027-r0tl01kq 803 12 in in IN cord-010027-r0tl01kq 803 13 binarized binarize VBN cord-010027-r0tl01kq 803 14 images image NNS cord-010027-r0tl01kq 803 15 or or CC cord-010027-r0tl01kq 803 16 pixel pixel NN cord-010027-r0tl01kq 803 17 distribution distribution NN cord-010027-r0tl01kq 803 18 using use VBG cord-010027-r0tl01kq 803 19 stereology stereology NN cord-010027-r0tl01kq 803 20 . . . cord-010027-r0tl01kq 804 1 Our -PRON- PRP$ cord-010027-r0tl01kq 804 2 data datum NNS cord-010027-r0tl01kq 804 3 show show VBP cord-010027-r0tl01kq 804 4 that that IN cord-010027-r0tl01kq 804 5 HMM HMM NNP cord-010027-r0tl01kq 804 6 can can MD cord-010027-r0tl01kq 804 7 be be VB cord-010027-r0tl01kq 804 8 used use VBN cord-010027-r0tl01kq 804 9 for for IN cord-010027-r0tl01kq 804 10 interrogating interrogate VBG cord-010027-r0tl01kq 804 11 biological biological JJ cord-010027-r0tl01kq 804 12 pathways pathway NNS cord-010027-r0tl01kq 804 13 in in IN cord-010027-r0tl01kq 804 14 tissue tissue NN cord-010027-r0tl01kq 804 15 sections section NNS cord-010027-r0tl01kq 804 16 and and CC cord-010027-r0tl01kq 804 17 , , , cord-010027-r0tl01kq 804 18 ultimately ultimately RB cord-010027-r0tl01kq 804 19 , , , cord-010027-r0tl01kq 804 20 automated automate VBN cord-010027-r0tl01kq 804 21 diagnosis diagnosis NN cord-010027-r0tl01kq 804 22 of of IN cord-010027-r0tl01kq 804 23 disease disease NN cord-010027-r0tl01kq 804 24 states state NNS cord-010027-r0tl01kq 804 25 . . . cord-010027-r0tl01kq 805 1 Personalising Personalising NNP cord-010027-r0tl01kq 806 1 Whilst whilst IN cord-010027-r0tl01kq 807 1 pre pre JJ cord-010027-r0tl01kq 807 2 - - JJ cord-010027-r0tl01kq 807 3 operative operative JJ cord-010027-r0tl01kq 807 4 radiotherapy radiotherapy NN cord-010027-r0tl01kq 807 5 is be VBZ cord-010027-r0tl01kq 807 6 the the DT cord-010027-r0tl01kq 807 7 standard standard NN cord-010027-r0tl01kq 807 8 of of IN cord-010027-r0tl01kq 807 9 care care NN cord-010027-r0tl01kq 807 10 in in IN cord-010027-r0tl01kq 807 11 locally locally RB cord-010027-r0tl01kq 807 12 advanced advanced JJ cord-010027-r0tl01kq 807 13 rectal rectal JJ cord-010027-r0tl01kq 807 14 cancer cancer NN cord-010027-r0tl01kq 807 15 ( ( -LRB- cord-010027-r0tl01kq 807 16 LARC LARC NNP cord-010027-r0tl01kq 807 17 ) ) -RRB- cord-010027-r0tl01kq 807 18 , , , cord-010027-r0tl01kq 807 19 only only RB cord-010027-r0tl01kq 807 20 half half NN cord-010027-r0tl01kq 807 21 of of IN cord-010027-r0tl01kq 807 22 patients patient NNS cord-010027-r0tl01kq 807 23 respond respond VBP cord-010027-r0tl01kq 807 24 . . . cord-010027-r0tl01kq 808 1 Individualised individualised JJ cord-010027-r0tl01kq 808 2 treatment treatment NN cord-010027-r0tl01kq 808 3 based base VBN cord-010027-r0tl01kq 808 4 on on IN cord-010027-r0tl01kq 808 5 a a DT cord-010027-r0tl01kq 808 6 predictive predictive JJ cord-010027-r0tl01kq 808 7 test test NN cord-010027-r0tl01kq 808 8 could could MD cord-010027-r0tl01kq 808 9 avoid avoid VB cord-010027-r0tl01kq 808 10 unnecessary unnecessary JJ cord-010027-r0tl01kq 808 11 radiation radiation NN cord-010027-r0tl01kq 808 12 exposure exposure NN cord-010027-r0tl01kq 808 13 in in IN cord-010027-r0tl01kq 808 14 poor poor JJ cord-010027-r0tl01kq 808 15 responders responder NNS cord-010027-r0tl01kq 808 16 . . . cord-010027-r0tl01kq 809 1 Macrophages macrophage NNS cord-010027-r0tl01kq 809 2 in in IN cord-010027-r0tl01kq 809 3 the the DT cord-010027-r0tl01kq 809 4 tumour tumour NN cord-010027-r0tl01kq 809 5 microenvironment microenvironment NN cord-010027-r0tl01kq 809 6 with with IN cord-010027-r0tl01kq 809 7 tumoricidal tumoricidal JJ cord-010027-r0tl01kq 809 8 M1 M1 NNP cord-010027-r0tl01kq 809 9 and and CC cord-010027-r0tl01kq 809 10 tumour tumour NN cord-010027-r0tl01kq 809 11 protective protective JJ cord-010027-r0tl01kq 809 12 M2 m2 JJ cord-010027-r0tl01kq 809 13 phenotypes phenotype NNS cord-010027-r0tl01kq 809 14 could could MD cord-010027-r0tl01kq 809 15 be be VB cord-010027-r0tl01kq 809 16 modulating modulate VBG cord-010027-r0tl01kq 809 17 this this DT cord-010027-r0tl01kq 809 18 response response NN cord-010027-r0tl01kq 809 19 . . . cord-010027-r0tl01kq 810 1 This this DT cord-010027-r0tl01kq 810 2 study study NN cord-010027-r0tl01kq 810 3 investigated investigate VBD cord-010027-r0tl01kq 810 4 the the DT cord-010027-r0tl01kq 810 5 possible possible JJ cord-010027-r0tl01kq 810 6 predictive predictive JJ cord-010027-r0tl01kq 810 7 value value NN cord-010027-r0tl01kq 810 8 of of IN cord-010027-r0tl01kq 810 9 M1 M1 NNP cord-010027-r0tl01kq 810 10 and and CC cord-010027-r0tl01kq 810 11 M2 M2 NNP cord-010027-r0tl01kq 810 12 subpopulations subpopulation NNS cord-010027-r0tl01kq 810 13 in in IN cord-010027-r0tl01kq 810 14 identifying identify VBG cord-010027-r0tl01kq 810 15 the the DT cord-010027-r0tl01kq 810 16 response response NN cord-010027-r0tl01kq 810 17 to to IN cord-010027-r0tl01kq 810 18 short short JJ cord-010027-r0tl01kq 810 19 - - HYPH cord-010027-r0tl01kq 810 20 course course NN cord-010027-r0tl01kq 810 21 radiotherapy radiotherapy NN cord-010027-r0tl01kq 810 22 ( ( -LRB- cord-010027-r0tl01kq 810 23 SCRT SCRT NNP cord-010027-r0tl01kq 810 24 ) ) -RRB- cord-010027-r0tl01kq 810 25 . . . cord-010027-r0tl01kq 811 1 Pre pre JJ cord-010027-r0tl01kq 811 2 - - JJ cord-010027-r0tl01kq 811 3 treatment treatment JJ cord-010027-r0tl01kq 811 4 biopsies biopsy NNS cord-010027-r0tl01kq 811 5 and and CC cord-010027-r0tl01kq 811 6 post post JJ cord-010027-r0tl01kq 811 7 - - JJ cord-010027-r0tl01kq 811 8 treatment treatment JJ cord-010027-r0tl01kq 811 9 resection resection NN cord-010027-r0tl01kq 811 10 samples sample NNS cord-010027-r0tl01kq 811 11 were be VBD cord-010027-r0tl01kq 811 12 taken take VBN cord-010027-r0tl01kq 811 13 from from IN cord-010027-r0tl01kq 811 14 29 29 CD cord-010027-r0tl01kq 811 15 patients patient NNS cord-010027-r0tl01kq 811 16 with with IN cord-010027-r0tl01kq 811 17 LARC LARC NNP cord-010027-r0tl01kq 811 18 given give VBN cord-010027-r0tl01kq 811 19 SCRT SCRT NNP cord-010027-r0tl01kq 811 20 . . . cord-010027-r0tl01kq 812 1 Dual dual JJ cord-010027-r0tl01kq 812 2 - - HYPH cord-010027-r0tl01kq 812 3 staining stain VBG cord-010027-r0tl01kq 812 4 immunohistochemistry immunohistochemistry NN cord-010027-r0tl01kq 812 5 was be VBD cord-010027-r0tl01kq 812 6 performed perform VBN cord-010027-r0tl01kq 812 7 with with IN cord-010027-r0tl01kq 812 8 CD68 CD68 NNP cord-010027-r0tl01kq 812 9 , , , cord-010027-r0tl01kq 812 10 HLA HLA NNP cord-010027-r0tl01kq 812 11 - - HYPH cord-010027-r0tl01kq 812 12 DR DR NNP cord-010027-r0tl01kq 812 13 ( ( -LRB- cord-010027-r0tl01kq 812 14 M1 M1 NNP cord-010027-r0tl01kq 812 15 marker marker NN cord-010027-r0tl01kq 812 16 ) ) -RRB- cord-010027-r0tl01kq 812 17 , , , cord-010027-r0tl01kq 812 18 and and CC cord-010027-r0tl01kq 812 19 CD163 CD163 NNP cord-010027-r0tl01kq 812 20 ( ( -LRB- cord-010027-r0tl01kq 812 21 M2 m2 JJ cord-010027-r0tl01kq 812 22 marker marker NN cord-010027-r0tl01kq 812 23 ) ) -RRB- cord-010027-r0tl01kq 812 24 . . . cord-010027-r0tl01kq 813 1 Samples sample NNS cord-010027-r0tl01kq 813 2 were be VBD cord-010027-r0tl01kq 813 3 scored score VBN cord-010027-r0tl01kq 813 4 for for IN cord-010027-r0tl01kq 813 5 hot hot JJ cord-010027-r0tl01kq 813 6 - - HYPH cord-010027-r0tl01kq 813 7 and and CC cord-010027-r0tl01kq 813 8 - - HYPH cord-010027-r0tl01kq 813 9 random random JJ cord-010027-r0tl01kq 813 10 spots spot NNS cord-010027-r0tl01kq 813 11 by by IN cord-010027-r0tl01kq 813 12 Nuance nuance NN cord-010027-r0tl01kq 813 13 software software NN cord-010027-r0tl01kq 813 14 ( ( -LRB- cord-010027-r0tl01kq 813 15 version version NN cord-010027-r0tl01kq 813 16 3.0.2 3.0.2 CD cord-010027-r0tl01kq 813 17 ) ) -RRB- cord-010027-r0tl01kq 813 18 and and CC cord-010027-r0tl01kq 813 19 compared compare VBN cord-010027-r0tl01kq 813 20 with with IN cord-010027-r0tl01kq 813 21 tumour tumour NN cord-010027-r0tl01kq 813 22 response response NN cord-010027-r0tl01kq 813 23 measured measure VBN cord-010027-r0tl01kq 813 24 by by IN cord-010027-r0tl01kq 813 25 reduction reduction NN cord-010027-r0tl01kq 813 26 in in IN cord-010027-r0tl01kq 813 27 tumour tumour NN cord-010027-r0tl01kq 813 28 - - HYPH cord-010027-r0tl01kq 813 29 cell cell NN cord-010027-r0tl01kq 813 30 density density NN cord-010027-r0tl01kq 813 31 . . . cord-010027-r0tl01kq 814 1 The the DT cord-010027-r0tl01kq 814 2 work work NN cord-010027-r0tl01kq 814 3 was be VBD cord-010027-r0tl01kq 814 4 partly partly RB cord-010027-r0tl01kq 814 5 funded fund VBN cord-010027-r0tl01kq 814 6 by by IN cord-010027-r0tl01kq 814 7 a a DT cord-010027-r0tl01kq 814 8 PathSoc PathSoc NNP cord-010027-r0tl01kq 814 9 Career Career NNP cord-010027-r0tl01kq 814 10 Development Development NNP cord-010027-r0tl01kq 814 11 Fellowship Fellowship NNP cord-010027-r0tl01kq 814 12 . . . cord-010027-r0tl01kq 815 1 Samples sample NNS cord-010027-r0tl01kq 815 2 showing show VBG cord-010027-r0tl01kq 815 3 a a DT cord-010027-r0tl01kq 815 4 low low JJ cord-010027-r0tl01kq 815 5 score score NN cord-010027-r0tl01kq 815 6 for for IN cord-010027-r0tl01kq 815 7 HLA HLA NNP cord-010027-r0tl01kq 815 8 - - HYPH cord-010027-r0tl01kq 815 9 DR DR NNP cord-010027-r0tl01kq 815 10 positive positive JJ cord-010027-r0tl01kq 815 11 M1 M1 NNP cord-010027-r0tl01kq 815 12 macrophages macrophage NNS cord-010027-r0tl01kq 815 13 exhibited exhibit VBD cord-010027-r0tl01kq 815 14 a a DT cord-010027-r0tl01kq 815 15 better well JJR cord-010027-r0tl01kq 815 16 response response NN cord-010027-r0tl01kq 815 17 to to IN cord-010027-r0tl01kq 815 18 SCRT SCRT NNP cord-010027-r0tl01kq 815 19 with with IN cord-010027-r0tl01kq 815 20 a a DT cord-010027-r0tl01kq 815 21 median median JJ cord-010027-r0tl01kq 815 22 80 80 CD cord-010027-r0tl01kq 815 23 % % NN cord-010027-r0tl01kq 815 24 reduction reduction NN cord-010027-r0tl01kq 815 25 in in IN cord-010027-r0tl01kq 815 26 tumour tumour NN cord-010027-r0tl01kq 815 27 cell cell NN cord-010027-r0tl01kq 815 28 density density NN cord-010027-r0tl01kq 815 29 ( ( -LRB- cord-010027-r0tl01kq 815 30 IQR IQR NNP cord-010027-r0tl01kq 815 31 47 47 CD cord-010027-r0tl01kq 815 32 to to IN cord-010027-r0tl01kq 815 33 85 85 CD cord-010027-r0tl01kq 815 34 ) ) -RRB- cord-010027-r0tl01kq 815 35 . . . cord-010027-r0tl01kq 816 1 Those those DT cord-010027-r0tl01kq 816 2 with with IN cord-010027-r0tl01kq 816 3 a a DT cord-010027-r0tl01kq 816 4 high high JJ cord-010027-r0tl01kq 816 5 score score NN cord-010027-r0tl01kq 816 6 exhibited exhibit VBD cord-010027-r0tl01kq 816 7 a a DT cord-010027-r0tl01kq 816 8 poor poor JJ cord-010027-r0tl01kq 816 9 response response NN cord-010027-r0tl01kq 816 10 with with IN cord-010027-r0tl01kq 816 11 only only RB cord-010027-r0tl01kq 816 12 a a DT cord-010027-r0tl01kq 816 13 20 20 CD cord-010027-r0tl01kq 816 14 % % NN cord-010027-r0tl01kq 816 15 reduction reduction NN cord-010027-r0tl01kq 816 16 ( ( -LRB- cord-010027-r0tl01kq 816 17 IQR IQR NNP cord-010027-r0tl01kq 816 18 0 0 CD cord-010027-r0tl01kq 816 19 to to IN cord-010027-r0tl01kq 816 20 49 49 CD cord-010027-r0tl01kq 816 21 , , , cord-010027-r0tl01kq 816 22 p=0·017 p=0·017 NNP cord-010027-r0tl01kq 816 23 ) ) -RRB- cord-010027-r0tl01kq 816 24 . . . cord-010027-r0tl01kq 817 1 No no DT cord-010027-r0tl01kq 817 2 such such JJ cord-010027-r0tl01kq 817 3 trends trend NNS cord-010027-r0tl01kq 817 4 were be VBD cord-010027-r0tl01kq 817 5 observed observe VBN cord-010027-r0tl01kq 817 6 for for IN cord-010027-r0tl01kq 817 7 CD163 CD163 NNP cord-010027-r0tl01kq 817 8 + + SYM cord-010027-r0tl01kq 817 9 M2 M2 NNP cord-010027-r0tl01kq 817 10 macrophages macrophage NNS cord-010027-r0tl01kq 817 11 . . . cord-010027-r0tl01kq 818 1 The the DT cord-010027-r0tl01kq 818 2 ratio ratio NN cord-010027-r0tl01kq 818 3 of of IN cord-010027-r0tl01kq 818 4 HLA HLA NNP cord-010027-r0tl01kq 818 5 - - HYPH cord-010027-r0tl01kq 818 6 DR+ DR+ NNP cord-010027-r0tl01kq 818 7 to to IN cord-010027-r0tl01kq 818 8 CD163 CD163 NNP cord-010027-r0tl01kq 818 9 + + CC cord-010027-r0tl01kq 818 10 macrophages macrophage NNS cord-010027-r0tl01kq 818 11 for for IN cord-010027-r0tl01kq 818 12 biopsy biopsy NN cord-010027-r0tl01kq 818 13 and and CC cord-010027-r0tl01kq 818 14 resection resection NN cord-010027-r0tl01kq 818 15 samples sample NNS cord-010027-r0tl01kq 818 16 was be VBD cord-010027-r0tl01kq 818 17 significantly significantly RB cord-010027-r0tl01kq 818 18 different different JJ cord-010027-r0tl01kq 818 19 showing show VBG cord-010027-r0tl01kq 818 20 a a DT cord-010027-r0tl01kq 818 21 drop drop NN cord-010027-r0tl01kq 818 22 in in IN cord-010027-r0tl01kq 818 23 the the DT cord-010027-r0tl01kq 818 24 HLA HLA NNP cord-010027-r0tl01kq 818 25 - - HYPH cord-010027-r0tl01kq 818 26 DR DR NNP cord-010027-r0tl01kq 818 27 positive positive JJ cord-010027-r0tl01kq 818 28 macrophages macrophage NNS cord-010027-r0tl01kq 818 29 in in IN cord-010027-r0tl01kq 818 30 the the DT cord-010027-r0tl01kq 818 31 resection resection NN cord-010027-r0tl01kq 818 32 samples sample NNS cord-010027-r0tl01kq 818 33 ( ( -LRB- cord-010027-r0tl01kq 818 34 biopsy biopsy JJ cord-010027-r0tl01kq 818 35 median median NN cord-010027-r0tl01kq 818 36 2·53 2·53 CD cord-010027-r0tl01kq 818 37 , , , cord-010027-r0tl01kq 818 38 IQR IQR NNP cord-010027-r0tl01kq 818 39 1.98 1.98 CD cord-010027-r0tl01kq 818 40 to to IN cord-010027-r0tl01kq 818 41 3.08 3.08 CD cord-010027-r0tl01kq 818 42 ; ; : cord-010027-r0tl01kq 818 43 resection resection NN cord-010027-r0tl01kq 818 44 median median NN cord-010027-r0tl01kq 818 45 1·38 1·38 CD cord-010027-r0tl01kq 818 46 , , , cord-010027-r0tl01kq 818 47 IQR IQR NNP cord-010027-r0tl01kq 818 48 0.96 0.96 CD cord-010027-r0tl01kq 818 49 to to IN cord-010027-r0tl01kq 818 50 1.80 1.80 CD cord-010027-r0tl01kq 818 51 ; ; : cord-010027-r0tl01kq 818 52 p=0·024 p=0·024 NN cord-010027-r0tl01kq 818 53 ) ) -RRB- cord-010027-r0tl01kq 818 54 . . . cord-010027-r0tl01kq 819 1 Assessment assessment NN cord-010027-r0tl01kq 819 2 of of IN cord-010027-r0tl01kq 819 3 macrophage macrophage NN cord-010027-r0tl01kq 819 4 subpopulations subpopulation NNS cord-010027-r0tl01kq 819 5 in in IN cord-010027-r0tl01kq 819 6 pre pre JJ cord-010027-r0tl01kq 819 7 - - JJ cord-010027-r0tl01kq 819 8 treatment treatment JJ cord-010027-r0tl01kq 819 9 biopsies biopsy NNS cord-010027-r0tl01kq 819 10 appears appear VBZ cord-010027-r0tl01kq 819 11 to to TO cord-010027-r0tl01kq 819 12 predict predict VB cord-010027-r0tl01kq 819 13 the the DT cord-010027-r0tl01kq 819 14 degree degree NN cord-010027-r0tl01kq 819 15 of of IN cord-010027-r0tl01kq 819 16 response response NN cord-010027-r0tl01kq 819 17 to to IN cord-010027-r0tl01kq 819 18 SCRT SCRT NNP cord-010027-r0tl01kq 819 19 in in IN cord-010027-r0tl01kq 819 20 LARC LARC NNP cord-010027-r0tl01kq 819 21 . . . cord-010027-r0tl01kq 820 1 Further further JJ cord-010027-r0tl01kq 820 2 investigation investigation NN cord-010027-r0tl01kq 820 3 to to TO cord-010027-r0tl01kq 820 4 validate validate VB cord-010027-r0tl01kq 820 5 these these DT cord-010027-r0tl01kq 820 6 findings finding NNS cord-010027-r0tl01kq 820 7 is be VBZ cord-010027-r0tl01kq 820 8 now now RB cord-010027-r0tl01kq 820 9 required require VBN cord-010027-r0tl01kq 820 10 prior prior RB cord-010027-r0tl01kq 820 11 to to IN cord-010027-r0tl01kq 820 12 developing develop VBG cord-010027-r0tl01kq 820 13 a a DT cord-010027-r0tl01kq 820 14 predictive predictive JJ cord-010027-r0tl01kq 820 15 test test NN cord-010027-r0tl01kq 820 16 for for IN cord-010027-r0tl01kq 820 17 use use NN cord-010027-r0tl01kq 820 18 in in IN cord-010027-r0tl01kq 820 19 routine routine JJ cord-010027-r0tl01kq 820 20 clinical clinical JJ cord-010027-r0tl01kq 820 21 practice practice NN cord-010027-r0tl01kq 820 22 . . . cord-010027-r0tl01kq 821 1 Patients patient NNS cord-010027-r0tl01kq 821 2 with with IN cord-010027-r0tl01kq 821 3 a a DT cord-010027-r0tl01kq 821 4 poor poor JJ cord-010027-r0tl01kq 821 5 predicted predict VBN cord-010027-r0tl01kq 821 6 response response NN cord-010027-r0tl01kq 821 7 could could MD cord-010027-r0tl01kq 821 8 avoid avoid VB cord-010027-r0tl01kq 821 9 toxic toxic JJ cord-010027-r0tl01kq 821 10 and and CC cord-010027-r0tl01kq 821 11 costly costly JJ cord-010027-r0tl01kq 821 12 radiotherapy radiotherapy NN cord-010027-r0tl01kq 821 13 and and CC cord-010027-r0tl01kq 821 14 undergo undergo VB cord-010027-r0tl01kq 821 15 alternative alternative JJ cord-010027-r0tl01kq 821 16 strategies strategy NNS cord-010027-r0tl01kq 821 17 including include VBG cord-010027-r0tl01kq 821 18 chemotherapy chemotherapy NN cord-010027-r0tl01kq 821 19 . . . cord-010027-r0tl01kq 822 1 Next next JJ cord-010027-r0tl01kq 822 2 - - HYPH cord-010027-r0tl01kq 822 3 generation generation NN cord-010027-r0tl01kq 822 4 sequencing sequencing NN cord-010027-r0tl01kq 822 5 technologies technology NNS cord-010027-r0tl01kq 822 6 ( ( -LRB- cord-010027-r0tl01kq 822 7 e.g. e.g. RB cord-010027-r0tl01kq 822 8 16S 16S NNP cord-010027-r0tl01kq 822 9 profiling profiling NN cord-010027-r0tl01kq 822 10 ) ) -RRB- cord-010027-r0tl01kq 822 11 are be VBP cord-010027-r0tl01kq 822 12 increasingly increasingly RB cord-010027-r0tl01kq 822 13 used use VBN cord-010027-r0tl01kq 822 14 to to TO cord-010027-r0tl01kq 822 15 investigate investigate VB cord-010027-r0tl01kq 822 16 complex complex JJ cord-010027-r0tl01kq 822 17 bacterial bacterial JJ cord-010027-r0tl01kq 822 18 communities community NNS cord-010027-r0tl01kq 822 19 . . . cord-010027-r0tl01kq 823 1 They -PRON- PRP cord-010027-r0tl01kq 823 2 have have VBP cord-010027-r0tl01kq 823 3 advantages advantage NNS cord-010027-r0tl01kq 823 4 over over IN cord-010027-r0tl01kq 823 5 classical classical JJ cord-010027-r0tl01kq 823 6 methods method NNS cord-010027-r0tl01kq 823 7 , , , cord-010027-r0tl01kq 823 8 as as IN cord-010027-r0tl01kq 823 9 a a DT cord-010027-r0tl01kq 823 10 significant significant JJ cord-010027-r0tl01kq 823 11 proportion proportion NN cord-010027-r0tl01kq 823 12 of of IN cord-010027-r0tl01kq 823 13 bacteria bacteria NNS cord-010027-r0tl01kq 823 14 are be VBP cord-010027-r0tl01kq 823 15 ' ' `` cord-010027-r0tl01kq 823 16 non non JJ cord-010027-r0tl01kq 823 17 - - JJ cord-010027-r0tl01kq 823 18 culturable culturable JJ cord-010027-r0tl01kq 823 19 ' ' '' cord-010027-r0tl01kq 823 20 . . . cord-010027-r0tl01kq 824 1 However however RB cord-010027-r0tl01kq 824 2 , , , cord-010027-r0tl01kq 824 3 they -PRON- PRP cord-010027-r0tl01kq 824 4 do do VBP cord-010027-r0tl01kq 824 5 not not RB cord-010027-r0tl01kq 824 6 distinguish distinguish VB cord-010027-r0tl01kq 824 7 ' ' `` cord-010027-r0tl01kq 824 8 viable viable JJ cord-010027-r0tl01kq 824 9 ' ' '' cord-010027-r0tl01kq 824 10 and and CC cord-010027-r0tl01kq 824 11 ' ' `` cord-010027-r0tl01kq 824 12 non non JJ cord-010027-r0tl01kq 824 13 - - JJ cord-010027-r0tl01kq 824 14 viable viable JJ cord-010027-r0tl01kq 824 15 ' ' '' cord-010027-r0tl01kq 824 16 populations population NNS cord-010027-r0tl01kq 824 17 , , , cord-010027-r0tl01kq 824 18 which which WDT cord-010027-r0tl01kq 824 19 may may MD cord-010027-r0tl01kq 824 20 skew skew VB cord-010027-r0tl01kq 824 21 results result NNS cord-010027-r0tl01kq 824 22 , , , cord-010027-r0tl01kq 824 23 particularly particularly RB cord-010027-r0tl01kq 824 24 following follow VBG cord-010027-r0tl01kq 824 25 antibiotic antibiotic JJ cord-010027-r0tl01kq 824 26 exposure exposure NN cord-010027-r0tl01kq 824 27 . . . cord-010027-r0tl01kq 825 1 Here here RB cord-010027-r0tl01kq 825 2 we -PRON- PRP cord-010027-r0tl01kq 825 3 report report VBP cord-010027-r0tl01kq 825 4 culture culture NN cord-010027-r0tl01kq 825 5 and and CC cord-010027-r0tl01kq 825 6 16S 16s JJ cord-010027-r0tl01kq 825 7 data datum NNS cord-010027-r0tl01kq 825 8 from from IN cord-010027-r0tl01kq 825 9 a a DT cord-010027-r0tl01kq 825 10 clinically clinically RB cord-010027-r0tl01kq 825 11 reflective reflective JJ cord-010027-r0tl01kq 825 12 human human JJ cord-010027-r0tl01kq 825 13 gut gut NN cord-010027-r0tl01kq 825 14 model model NN cord-010027-r0tl01kq 825 15 , , , cord-010027-r0tl01kq 825 16 describing describe VBG cord-010027-r0tl01kq 825 17 changes change NNS cord-010027-r0tl01kq 825 18 in in IN cord-010027-r0tl01kq 825 19 the the DT cord-010027-r0tl01kq 825 20 gut gut NN cord-010027-r0tl01kq 825 21 microbiota microbiota NN cord-010027-r0tl01kq 825 22 following follow VBG cord-010027-r0tl01kq 825 23 exposure exposure NN cord-010027-r0tl01kq 825 24 to to IN cord-010027-r0tl01kq 825 25 multiple multiple JJ cord-010027-r0tl01kq 825 26 antibiotics antibiotic NNS cord-010027-r0tl01kq 825 27 . . . cord-010027-r0tl01kq 826 1 A a DT cord-010027-r0tl01kq 826 2 triple triple JJ cord-010027-r0tl01kq 826 3 - - HYPH cord-010027-r0tl01kq 826 4 stage stage NN cord-010027-r0tl01kq 826 5 chemostat chemostat NN cord-010027-r0tl01kq 826 6 model model NN cord-010027-r0tl01kq 826 7 was be VBD cord-010027-r0tl01kq 826 8 inoculated inoculate VBN cord-010027-r0tl01kq 826 9 with with IN cord-010027-r0tl01kq 826 10 pooled pool VBN cord-010027-r0tl01kq 826 11 human human JJ cord-010027-r0tl01kq 826 12 faeces faece NNS cord-010027-r0tl01kq 826 13 from from IN cord-010027-r0tl01kq 826 14 healthy healthy JJ cord-010027-r0tl01kq 826 15 volunteers volunteer NNS cord-010027-r0tl01kq 826 16 to to TO cord-010027-r0tl01kq 826 17 establish establish VB cord-010027-r0tl01kq 826 18 gut gut NN cord-010027-r0tl01kq 826 19 microbiota microbiota NN cord-010027-r0tl01kq 826 20 populations population NNS cord-010027-r0tl01kq 826 21 . . . cord-010027-r0tl01kq 827 1 The the DT cord-010027-r0tl01kq 827 2 model model NN cord-010027-r0tl01kq 827 3 was be VBD cord-010027-r0tl01kq 827 4 sequentially sequentially RB cord-010027-r0tl01kq 827 5 exposed expose VBN cord-010027-r0tl01kq 827 6 to to IN cord-010027-r0tl01kq 827 7 clindamycin clindamycin NN cord-010027-r0tl01kq 827 8 ( ( -LRB- cord-010027-r0tl01kq 827 9 33.9 33.9 CD cord-010027-r0tl01kq 827 10 mg mg NNP cord-010027-r0tl01kq 827 11 / / SYM cord-010027-r0tl01kq 827 12 L L NNP cord-010027-r0tl01kq 827 13 , , , cord-010027-r0tl01kq 827 14 QDS QDS NNP cord-010027-r0tl01kq 827 15 , , , cord-010027-r0tl01kq 827 16 7days 7days CD cord-010027-r0tl01kq 827 17 ) ) -RRB- cord-010027-r0tl01kq 827 18 , , , cord-010027-r0tl01kq 827 19 vancomycin vancomycin FW cord-010027-r0tl01kq 827 20 ( ( -LRB- cord-010027-r0tl01kq 827 21 125mg 125mg NNP cord-010027-r0tl01kq 827 22 / / SYM cord-010027-r0tl01kq 827 23 L L NNP cord-010027-r0tl01kq 827 24 , , , cord-010027-r0tl01kq 827 25 QDS QDS NNP cord-010027-r0tl01kq 827 26 , , , cord-010027-r0tl01kq 827 27 7days 7days CD cord-010027-r0tl01kq 827 28 ) ) -RRB- cord-010027-r0tl01kq 827 29 and and CC cord-010027-r0tl01kq 827 30 fidaxomicin fidaxomicin NNP cord-010027-r0tl01kq 827 31 ( ( -LRB- cord-010027-r0tl01kq 827 32 200 200 CD cord-010027-r0tl01kq 827 33 mg mg NNP cord-010027-r0tl01kq 827 34 / / SYM cord-010027-r0tl01kq 827 35 L L NNP cord-010027-r0tl01kq 827 36 , , , cord-010027-r0tl01kq 827 37 BD BD NNP cord-010027-r0tl01kq 827 38 , , , cord-010027-r0tl01kq 827 39 7 7 CD cord-010027-r0tl01kq 827 40 days day NNS cord-010027-r0tl01kq 827 41 ) ) -RRB- cord-010027-r0tl01kq 827 42 . . . cord-010027-r0tl01kq 828 1 Specific specific JJ cord-010027-r0tl01kq 828 2 bacterial bacterial JJ cord-010027-r0tl01kq 828 3 populations population NNS cord-010027-r0tl01kq 828 4 were be VBD cord-010027-r0tl01kq 828 5 enumerated enumerate VBN cord-010027-r0tl01kq 828 6 daily daily RB cord-010027-r0tl01kq 828 7 on on IN cord-010027-r0tl01kq 828 8 selective selective JJ cord-010027-r0tl01kq 828 9 agars agar NNS cord-010027-r0tl01kq 828 10 . . . cord-010027-r0tl01kq 829 1 Periodically periodically RB cord-010027-r0tl01kq 829 2 , , , cord-010027-r0tl01kq 829 3 16S 16S NNP cord-010027-r0tl01kq 829 4 profiling profiling NN cord-010027-r0tl01kq 829 5 of of IN cord-010027-r0tl01kq 829 6 gut gut NN cord-010027-r0tl01kq 829 7 model model NN cord-010027-r0tl01kq 829 8 samples sample NNS cord-010027-r0tl01kq 829 9 was be VBD cord-010027-r0tl01kq 829 10 performed perform VBN cord-010027-r0tl01kq 829 11 ; ; : cord-010027-r0tl01kq 829 12 DNA DNA NNP cord-010027-r0tl01kq 829 13 was be VBD cord-010027-r0tl01kq 829 14 extracted extract VBN cord-010027-r0tl01kq 829 15 on on IN cord-010027-r0tl01kq 829 16 a a DT cord-010027-r0tl01kq 829 17 QIAXtractor qiaxtractor NN cord-010027-r0tl01kq 829 18 , , , cord-010027-r0tl01kq 829 19 16S 16S NNP cord-010027-r0tl01kq 829 20 V4 V4 NNP cord-010027-r0tl01kq 829 21 PCR PCR NNP cord-010027-r0tl01kq 829 22 products product NNS cord-010027-r0tl01kq 829 23 were be VBD cord-010027-r0tl01kq 829 24 sequenced sequence VBN cord-010027-r0tl01kq 829 25 on on IN cord-010027-r0tl01kq 829 26 an an DT cord-010027-r0tl01kq 829 27 Illumina Illumina NNP cord-010027-r0tl01kq 829 28 MiSeq MiSeq NNP cord-010027-r0tl01kq 829 29 , , , cord-010027-r0tl01kq 829 30 and and CC cord-010027-r0tl01kq 829 31 resulting result VBG cord-010027-r0tl01kq 829 32 data datum NNS cord-010027-r0tl01kq 829 33 were be VBD cord-010027-r0tl01kq 829 34 analysed analyse VBN cord-010027-r0tl01kq 829 35 using use VBG cord-010027-r0tl01kq 829 36 QIIME QIIME NNP cord-010027-r0tl01kq 829 37 . . . cord-010027-r0tl01kq 830 1 Both both DT cord-010027-r0tl01kq 830 2 culture culture NN cord-010027-r0tl01kq 830 3 and and CC cord-010027-r0tl01kq 830 4 16S 16s JJ cord-010027-r0tl01kq 830 5 profiling profiling NN cord-010027-r0tl01kq 830 6 demonstrated demonstrate VBD cord-010027-r0tl01kq 830 7 marked marked JJ cord-010027-r0tl01kq 830 8 alterations alteration NNS cord-010027-r0tl01kq 830 9 in in IN cord-010027-r0tl01kq 830 10 gut gut NN cord-010027-r0tl01kq 830 11 microbiota microbiota NN cord-010027-r0tl01kq 830 12 populations population NNS cord-010027-r0tl01kq 830 13 following follow VBG cord-010027-r0tl01kq 830 14 antibiotic antibiotic JJ cord-010027-r0tl01kq 830 15 exposure exposure NN cord-010027-r0tl01kq 830 16 . . . cord-010027-r0tl01kq 831 1 For for IN cord-010027-r0tl01kq 831 2 many many JJ cord-010027-r0tl01kq 831 3 populations population NNS cord-010027-r0tl01kq 831 4 , , , cord-010027-r0tl01kq 831 5 notably notably RB cord-010027-r0tl01kq 831 6 bifidobacteria bifidobacteria NNP cord-010027-r0tl01kq 831 7 and and CC cord-010027-r0tl01kq 831 8 enterobacteria enterobacteria NNP cord-010027-r0tl01kq 831 9 , , , cord-010027-r0tl01kq 831 10 changes change NNS cord-010027-r0tl01kq 831 11 seen see VBN cord-010027-r0tl01kq 831 12 by by IN cord-010027-r0tl01kq 831 13 culture culture NN cord-010027-r0tl01kq 831 14 correlated correlate VBN cord-010027-r0tl01kq 831 15 with with IN cord-010027-r0tl01kq 831 16 16S 16s JJ cord-010027-r0tl01kq 831 17 profiling profiling NN cord-010027-r0tl01kq 831 18 . . . cord-010027-r0tl01kq 832 1 However however RB cord-010027-r0tl01kq 832 2 , , , cord-010027-r0tl01kq 832 3 as as IN cord-010027-r0tl01kq 832 4 culture culture NN cord-010027-r0tl01kq 832 5 describes describe VBZ cord-010027-r0tl01kq 832 6 numerical numerical JJ cord-010027-r0tl01kq 832 7 changes change NNS cord-010027-r0tl01kq 832 8 in in IN cord-010027-r0tl01kq 832 9 populations population NNS cord-010027-r0tl01kq 832 10 , , , cord-010027-r0tl01kq 832 11 and and CC cord-010027-r0tl01kq 832 12 16S 16S NNP cord-010027-r0tl01kq 832 13 profiling profiling NN cord-010027-r0tl01kq 832 14 describes describe VBZ cord-010027-r0tl01kq 832 15 proportional proportional JJ cord-010027-r0tl01kq 832 16 changes change NNS cord-010027-r0tl01kq 832 17 , , , cord-010027-r0tl01kq 832 18 results result NNS cord-010027-r0tl01kq 832 19 are be VBP cord-010027-r0tl01kq 832 20 not not RB cord-010027-r0tl01kq 832 21 always always RB cord-010027-r0tl01kq 832 22 directly directly RB cord-010027-r0tl01kq 832 23 comparable comparable JJ cord-010027-r0tl01kq 832 24 . . . cord-010027-r0tl01kq 833 1 16S 16S NNP cord-010027-r0tl01kq 833 2 profiling profiling NN cord-010027-r0tl01kq 833 3 greatly greatly RB cord-010027-r0tl01kq 833 4 increased increase VBN cord-010027-r0tl01kq 833 5 microbiome microbiome NN cord-010027-r0tl01kq 833 6 coverage coverage NN cord-010027-r0tl01kq 833 7 , , , cord-010027-r0tl01kq 833 8 particularly particularly RB cord-010027-r0tl01kq 833 9 for for IN cord-010027-r0tl01kq 833 10 clostridia clostridia NNP cord-010027-r0tl01kq 833 11 . . . cord-010027-r0tl01kq 834 1 Population population NN cord-010027-r0tl01kq 834 2 diversity diversity NN cord-010027-r0tl01kq 834 3 ( ( -LRB- cord-010027-r0tl01kq 834 4 number number NN cord-010027-r0tl01kq 834 5 of of IN cord-010027-r0tl01kq 834 6 observed observed JJ cord-010027-r0tl01kq 834 7 species specie NNS cord-010027-r0tl01kq 834 8 and and CC cord-010027-r0tl01kq 834 9 Shannon Shannon NNP cord-010027-r0tl01kq 834 10 index index NN cord-010027-r0tl01kq 834 11 ) ) -RRB- cord-010027-r0tl01kq 834 12 decreased decrease VBD cord-010027-r0tl01kq 834 13 with with IN cord-010027-r0tl01kq 834 14 sequential sequential JJ cord-010027-r0tl01kq 834 15 antibiotic antibiotic JJ cord-010027-r0tl01kq 834 16 exposure exposure NN cord-010027-r0tl01kq 834 17 . . . cord-010027-r0tl01kq 835 1 Use use NN cord-010027-r0tl01kq 835 2 of of IN cord-010027-r0tl01kq 835 3 culture culture NN cord-010027-r0tl01kq 835 4 and and CC cord-010027-r0tl01kq 835 5 molecular molecular JJ cord-010027-r0tl01kq 835 6 methods method NNS cord-010027-r0tl01kq 835 7 in in IN cord-010027-r0tl01kq 835 8 tandem tandem NN cord-010027-r0tl01kq 835 9 can can MD cord-010027-r0tl01kq 835 10 greatly greatly RB cord-010027-r0tl01kq 835 11 increase increase VB cord-010027-r0tl01kq 835 12 understanding understanding NN cord-010027-r0tl01kq 835 13 of of IN cord-010027-r0tl01kq 835 14 changes change NNS cord-010027-r0tl01kq 835 15 occurring occur VBG cord-010027-r0tl01kq 835 16 in in IN cord-010027-r0tl01kq 835 17 complex complex JJ cord-010027-r0tl01kq 835 18 microbial microbial JJ cord-010027-r0tl01kq 835 19 populations population NNS cord-010027-r0tl01kq 835 20 . . . cord-010027-r0tl01kq 836 1 Barrett Barrett NNP cord-010027-r0tl01kq 836 2 's 's POS cord-010027-r0tl01kq 836 3 oesophagus oesophagus NN cord-010027-r0tl01kq 836 4 is be VBZ cord-010027-r0tl01kq 836 5 the the DT cord-010027-r0tl01kq 836 6 erosive erosive JJ cord-010027-r0tl01kq 836 7 replacement replacement NN cord-010027-r0tl01kq 836 8 of of IN cord-010027-r0tl01kq 836 9 the the DT cord-010027-r0tl01kq 836 10 normal normal JJ cord-010027-r0tl01kq 836 11 squamous squamous JJ cord-010027-r0tl01kq 836 12 oesophageal oesophageal JJ cord-010027-r0tl01kq 836 13 lining lining NN cord-010027-r0tl01kq 836 14 with with IN cord-010027-r0tl01kq 836 15 a a DT cord-010027-r0tl01kq 836 16 glandular glandular JJ cord-010027-r0tl01kq 836 17 epithelium epithelium NN cord-010027-r0tl01kq 836 18 and and CC cord-010027-r0tl01kq 836 19 is be VBZ cord-010027-r0tl01kq 836 20 the the DT cord-010027-r0tl01kq 836 21 major major JJ cord-010027-r0tl01kq 836 22 precursor precursor NN cord-010027-r0tl01kq 836 23 of of IN cord-010027-r0tl01kq 836 24 oesophageal oesophageal JJ cord-010027-r0tl01kq 836 25 adenocarcinoma adenocarcinoma NN cord-010027-r0tl01kq 836 26 . . . cord-010027-r0tl01kq 837 1 Barrett Barrett NNP cord-010027-r0tl01kq 837 2 's 's POS cord-010027-r0tl01kq 837 3 patients patient NNS cord-010027-r0tl01kq 837 4 are be VBP cord-010027-r0tl01kq 837 5 enrolled enrol VBN cord-010027-r0tl01kq 837 6 into into IN cord-010027-r0tl01kq 837 7 active active JJ cord-010027-r0tl01kq 837 8 surveillance surveillance NN cord-010027-r0tl01kq 837 9 programmes programme NNS cord-010027-r0tl01kq 837 10 in in IN cord-010027-r0tl01kq 837 11 order order NN cord-010027-r0tl01kq 837 12 to to TO cord-010027-r0tl01kq 837 13 detect detect VB cord-010027-r0tl01kq 837 14 and and CC cord-010027-r0tl01kq 837 15 treat treat VB cord-010027-r0tl01kq 837 16 oesophageal oesophageal JJ cord-010027-r0tl01kq 837 17 cancer cancer NN cord-010027-r0tl01kq 837 18 at at IN cord-010027-r0tl01kq 837 19 an an DT cord-010027-r0tl01kq 837 20 early early JJ cord-010027-r0tl01kq 837 21 stage stage NN cord-010027-r0tl01kq 837 22 . . . cord-010027-r0tl01kq 838 1 Surveillance surveillance NN cord-010027-r0tl01kq 838 2 however however RB cord-010027-r0tl01kq 838 3 is be VBZ cord-010027-r0tl01kq 838 4 costly costly JJ cord-010027-r0tl01kq 838 5 and and CC cord-010027-r0tl01kq 838 6 burdening burden VBG cord-010027-r0tl01kq 838 7 to to IN cord-010027-r0tl01kq 838 8 patients patient NNS cord-010027-r0tl01kq 838 9 . . . cord-010027-r0tl01kq 839 1 To to TO cord-010027-r0tl01kq 839 2 improve improve VB cord-010027-r0tl01kq 839 3 screening screen VBG cord-010027-r0tl01kq 839 4 efficacy efficacy NN cord-010027-r0tl01kq 839 5 there there EX cord-010027-r0tl01kq 839 6 is be VBZ cord-010027-r0tl01kq 839 7 an an DT cord-010027-r0tl01kq 839 8 acute acute JJ cord-010027-r0tl01kq 839 9 need need NN cord-010027-r0tl01kq 839 10 for for IN cord-010027-r0tl01kq 839 11 accurate accurate JJ cord-010027-r0tl01kq 839 12 biomarkers biomarker NNS cord-010027-r0tl01kq 839 13 of of IN cord-010027-r0tl01kq 839 14 cancer cancer NN cord-010027-r0tl01kq 839 15 progression progression NN cord-010027-r0tl01kq 839 16 risk risk NN cord-010027-r0tl01kq 839 17 in in IN cord-010027-r0tl01kq 839 18 Barrett Barrett NNP cord-010027-r0tl01kq 839 19 's 's POS cord-010027-r0tl01kq 839 20 patients patient NNS cord-010027-r0tl01kq 839 21 . . . cord-010027-r0tl01kq 840 1 Understanding understand VBG cord-010027-r0tl01kq 840 2 the the DT cord-010027-r0tl01kq 840 3 pattern pattern NN cord-010027-r0tl01kq 840 4 and and CC cord-010027-r0tl01kq 840 5 pace pace NN cord-010027-r0tl01kq 840 6 of of IN cord-010027-r0tl01kq 840 7 clonal clonal JJ cord-010027-r0tl01kq 840 8 evolution evolution NN cord-010027-r0tl01kq 840 9 that that WDT cord-010027-r0tl01kq 840 10 occurs occur VBZ cord-010027-r0tl01kq 840 11 within within IN cord-010027-r0tl01kq 840 12 the the DT cord-010027-r0tl01kq 840 13 Barrett Barrett NNP cord-010027-r0tl01kq 840 14 's 's POS cord-010027-r0tl01kq 840 15 segment segment NN cord-010027-r0tl01kq 840 16 is be VBZ cord-010027-r0tl01kq 840 17 a a DT cord-010027-r0tl01kq 840 18 key key JJ cord-010027-r0tl01kq 840 19 step step NN cord-010027-r0tl01kq 840 20 towards towards IN cord-010027-r0tl01kq 840 21 achieving achieve VBG cord-010027-r0tl01kq 840 22 this this DT cord-010027-r0tl01kq 840 23 goal goal NN cord-010027-r0tl01kq 840 24 . . . cord-010027-r0tl01kq 841 1 Opinion opinion NN cord-010027-r0tl01kq 841 2 is be VBZ cord-010027-r0tl01kq 841 3 divided divide VBN cord-010027-r0tl01kq 841 4 over over IN cord-010027-r0tl01kq 841 5 whether whether IN cord-010027-r0tl01kq 841 6 goblet goblet NN cord-010027-r0tl01kq 841 7 cells cell NNS cord-010027-r0tl01kq 841 8 ( ( -LRB- cord-010027-r0tl01kq 841 9 intestinal intestinal JJ cord-010027-r0tl01kq 841 10 metaplasia metaplasia NN cord-010027-r0tl01kq 841 11 ) ) -RRB- cord-010027-r0tl01kq 841 12 on on IN cord-010027-r0tl01kq 841 13 oesophageal oesophageal JJ cord-010027-r0tl01kq 841 14 biopsy biopsy NN cord-010027-r0tl01kq 841 15 are be VBP cord-010027-r0tl01kq 841 16 required require VBN cord-010027-r0tl01kq 841 17 for for IN cord-010027-r0tl01kq 841 18 a a DT cord-010027-r0tl01kq 841 19 diagnosis diagnosis NN cord-010027-r0tl01kq 841 20 of of IN cord-010027-r0tl01kq 841 21 Barrett Barrett NNP cord-010027-r0tl01kq 841 22 's 's POS cord-010027-r0tl01kq 841 23 oesophagus oesophagus NN cord-010027-r0tl01kq 841 24 . . . cord-010027-r0tl01kq 842 1 This this DT cord-010027-r0tl01kq 842 2 is be VBZ cord-010027-r0tl01kq 842 3 based base VBN cord-010027-r0tl01kq 842 4 on on IN cord-010027-r0tl01kq 842 5 the the DT cord-010027-r0tl01kq 842 6 unproven unproven JJ cord-010027-r0tl01kq 842 7 assumption assumption NN cord-010027-r0tl01kq 842 8 that that IN cord-010027-r0tl01kq 842 9 goblet goblet NN cord-010027-r0tl01kq 842 10 cell cell NN cord-010027-r0tl01kq 842 11 differentiation differentiation NN cord-010027-r0tl01kq 842 12 marks mark NNS cord-010027-r0tl01kq 842 13 increased increase VBD cord-010027-r0tl01kq 842 14 cancer cancer NN cord-010027-r0tl01kq 842 15 risk risk NN cord-010027-r0tl01kq 842 16 in in IN cord-010027-r0tl01kq 842 17 Barrett Barrett NNP cord-010027-r0tl01kq 842 18 's 's POS cord-010027-r0tl01kq 842 19 oesophagus oesophagus NN cord-010027-r0tl01kq 842 20 patients patient NNS cord-010027-r0tl01kq 842 21 . . . cord-010027-r0tl01kq 843 1 We -PRON- PRP cord-010027-r0tl01kq 843 2 have have VBP cord-010027-r0tl01kq 843 3 investigated investigate VBN cord-010027-r0tl01kq 843 4 the the DT cord-010027-r0tl01kq 843 5 clonal clonal JJ cord-010027-r0tl01kq 843 6 structure structure NN cord-010027-r0tl01kq 843 7 of of IN cord-010027-r0tl01kq 843 8 non non JJ cord-010027-r0tl01kq 843 9 - - JJ cord-010027-r0tl01kq 843 10 dysplastic dysplastic JJ cord-010027-r0tl01kq 843 11 and and CC cord-010027-r0tl01kq 843 12 neoplastic neoplastic JJ cord-010027-r0tl01kq 843 13 Barrett Barrett NNP cord-010027-r0tl01kq 843 14 's 's POS cord-010027-r0tl01kq 843 15 oesophagus oesophagus NN cord-010027-r0tl01kq 843 16 by by IN cord-010027-r0tl01kq 843 17 combining combine VBG cord-010027-r0tl01kq 843 18 state state NN cord-010027-r0tl01kq 843 19 - - HYPH cord-010027-r0tl01kq 843 20 of of IN cord-010027-r0tl01kq 843 21 - - HYPH cord-010027-r0tl01kq 843 22 the the DT cord-010027-r0tl01kq 843 23 - - HYPH cord-010027-r0tl01kq 843 24 art art NN cord-010027-r0tl01kq 843 25 3D 3d NN cord-010027-r0tl01kq 843 26 modeling modeling NN cord-010027-r0tl01kq 843 27 and and CC cord-010027-r0tl01kq 843 28 genetic genetic JJ cord-010027-r0tl01kq 843 29 lineage lineage NN cord-010027-r0tl01kq 843 30 tracing tracing NN cord-010027-r0tl01kq 843 31 . . . cord-010027-r0tl01kq 844 1 By by IN cord-010027-r0tl01kq 844 2 tracing trace VBG cord-010027-r0tl01kq 844 3 the the DT cord-010027-r0tl01kq 844 4 clonal clonal JJ cord-010027-r0tl01kq 844 5 origin origin NN cord-010027-r0tl01kq 844 6 of of IN cord-010027-r0tl01kq 844 7 an an DT cord-010027-r0tl01kq 844 8 early early JJ cord-010027-r0tl01kq 844 9 oesophageal oesophageal JJ cord-010027-r0tl01kq 844 10 adenocarcinoma adenocarcinoma NN cord-010027-r0tl01kq 844 11 through through IN cord-010027-r0tl01kq 844 12 whole whole JJ cord-010027-r0tl01kq 844 13 - - HYPH cord-010027-r0tl01kq 844 14 exome exome NN cord-010027-r0tl01kq 844 15 sequencing sequencing NN cord-010027-r0tl01kq 844 16 and and CC cord-010027-r0tl01kq 844 17 mitochondrial mitochondrial JJ cord-010027-r0tl01kq 844 18 DNA dna NN cord-010027-r0tl01kq 844 19 sequencing sequencing NN cord-010027-r0tl01kq 844 20 , , , cord-010027-r0tl01kq 844 21 we -PRON- PRP cord-010027-r0tl01kq 844 22 find find VBP cord-010027-r0tl01kq 844 23 that that IN cord-010027-r0tl01kq 844 24 this this DT cord-010027-r0tl01kq 844 25 cancer cancer NN cord-010027-r0tl01kq 844 26 developed develop VBN cord-010027-r0tl01kq 844 27 from from IN cord-010027-r0tl01kq 844 28 non non JJ cord-010027-r0tl01kq 844 29 - - JJ cord-010027-r0tl01kq 844 30 goblet goblet JJ cord-010027-r0tl01kq 844 31 columnar columnar JJ cord-010027-r0tl01kq 844 32 epithelium epithelium NN cord-010027-r0tl01kq 844 33 , , , cord-010027-r0tl01kq 844 34 whereas whereas IN cord-010027-r0tl01kq 844 35 the the DT cord-010027-r0tl01kq 844 36 adjacent adjacent JJ cord-010027-r0tl01kq 844 37 goblet goblet NN cord-010027-r0tl01kq 844 38 - - HYPH cord-010027-r0tl01kq 844 39 bearing bear VBG cord-010027-r0tl01kq 844 40 mucosa mucosa NN cord-010027-r0tl01kq 844 41 was be VBD cord-010027-r0tl01kq 844 42 free free JJ cord-010027-r0tl01kq 844 43 of of IN cord-010027-r0tl01kq 844 44 oncogenic oncogenic JJ cord-010027-r0tl01kq 844 45 mutations mutation NNS cord-010027-r0tl01kq 844 46 . . . cord-010027-r0tl01kq 845 1 Our -PRON- PRP$ cord-010027-r0tl01kq 845 2 results result NNS cord-010027-r0tl01kq 845 3 have have VBP cord-010027-r0tl01kq 845 4 important important JJ cord-010027-r0tl01kq 845 5 implications implication NNS cord-010027-r0tl01kq 845 6 for for IN cord-010027-r0tl01kq 845 7 the the DT cord-010027-r0tl01kq 845 8 harmonization harmonization NN cord-010027-r0tl01kq 845 9 of of IN cord-010027-r0tl01kq 845 10 the the DT cord-010027-r0tl01kq 845 11 clinical clinical JJ cord-010027-r0tl01kq 845 12 diagnosis diagnosis NN cord-010027-r0tl01kq 845 13 of of IN cord-010027-r0tl01kq 845 14 Barrett Barrett NNP cord-010027-r0tl01kq 845 15 's 's POS cord-010027-r0tl01kq 845 16 oesophagus oesophagus NN cord-010027-r0tl01kq 845 17 . . . cord-010027-r0tl01kq 846 1 Long long JJ cord-010027-r0tl01kq 846 2 - - HYPH cord-010027-r0tl01kq 846 3 course course NN cord-010027-r0tl01kq 846 4 chemoradiotherapy chemoradiotherapy NN cord-010027-r0tl01kq 846 5 ( ( -LRB- cord-010027-r0tl01kq 846 6 CRT CRT NNP cord-010027-r0tl01kq 846 7 ) ) -RRB- cord-010027-r0tl01kq 846 8 is be VBZ cord-010027-r0tl01kq 846 9 used use VBN cord-010027-r0tl01kq 846 10 to to IN cord-010027-r0tl01kq 846 11 down down IN cord-010027-r0tl01kq 846 12 - - HYPH cord-010027-r0tl01kq 846 13 stage stage NN cord-010027-r0tl01kq 846 14 locally locally RB cord-010027-r0tl01kq 846 15 - - HYPH cord-010027-r0tl01kq 846 16 advanced advance VBN cord-010027-r0tl01kq 846 17 rectal rectal JJ cord-010027-r0tl01kq 846 18 cancer cancer NN cord-010027-r0tl01kq 846 19 ( ( -LRB- cord-010027-r0tl01kq 846 20 LARC LARC NNP cord-010027-r0tl01kq 846 21 ) ) -RRB- cord-010027-r0tl01kq 846 22 prior prior RB cord-010027-r0tl01kq 846 23 to to IN cord-010027-r0tl01kq 846 24 resection resection NN cord-010027-r0tl01kq 846 25 . . . cord-010027-r0tl01kq 847 1 An an DT cord-010027-r0tl01kq 847 2 interval interval NN cord-010027-r0tl01kq 847 3 period period NN cord-010027-r0tl01kq 847 4 prior prior RB cord-010027-r0tl01kq 847 5 to to IN cord-010027-r0tl01kq 847 6 surgery surgery NN cord-010027-r0tl01kq 847 7 allows allow VBZ cord-010027-r0tl01kq 847 8 for for IN cord-010027-r0tl01kq 847 9 tumour tumour NN cord-010027-r0tl01kq 847 10 shrinkage shrinkage NN cord-010027-r0tl01kq 847 11 to to TO cord-010027-r0tl01kq 847 12 facilitate facilitate VB cord-010027-r0tl01kq 847 13 surgical surgical JJ cord-010027-r0tl01kq 847 14 removal removal NN cord-010027-r0tl01kq 847 15 . . . cord-010027-r0tl01kq 848 1 The the DT cord-010027-r0tl01kq 848 2 optimal optimal JJ cord-010027-r0tl01kq 848 3 time time NN cord-010027-r0tl01kq 848 4 interval interval NN cord-010027-r0tl01kq 848 5 remains remain VBZ cord-010027-r0tl01kq 848 6 unclear unclear JJ cord-010027-r0tl01kq 848 7 , , , cord-010027-r0tl01kq 848 8 with with IN cord-010027-r0tl01kq 848 9 little little JJ cord-010027-r0tl01kq 848 10 high high JJ cord-010027-r0tl01kq 848 11 - - HYPH cord-010027-r0tl01kq 848 12 quality quality NN cord-010027-r0tl01kq 848 13 evidence evidence NN cord-010027-r0tl01kq 848 14 to to TO cord-010027-r0tl01kq 848 15 guide guide VB cord-010027-r0tl01kq 848 16 clinical clinical JJ cord-010027-r0tl01kq 848 17 decisions decision NNS cord-010027-r0tl01kq 848 18 about about IN cord-010027-r0tl01kq 848 19 when when WRB cord-010027-r0tl01kq 848 20 to to TO cord-010027-r0tl01kq 848 21 operate operate VB cord-010027-r0tl01kq 848 22 . . . cord-010027-r0tl01kq 849 1 This this DT cord-010027-r0tl01kq 849 2 study study NN cord-010027-r0tl01kq 849 3 explores explore VBZ cord-010027-r0tl01kq 849 4 the the DT cord-010027-r0tl01kq 849 5 pathological pathological JJ cord-010027-r0tl01kq 849 6 outcomes outcome NNS cord-010027-r0tl01kq 849 7 from from IN cord-010027-r0tl01kq 849 8 a a DT cord-010027-r0tl01kq 849 9 pilot pilot NN cord-010027-r0tl01kq 849 10 randomised randomise VBN cord-010027-r0tl01kq 849 11 controlled control VBN cord-010027-r0tl01kq 849 12 trial trial NN cord-010027-r0tl01kq 849 13 comparing compare VBG cord-010027-r0tl01kq 849 14 an an DT cord-010027-r0tl01kq 849 15 interval interval NN cord-010027-r0tl01kq 849 16 of of IN cord-010027-r0tl01kq 849 17 6 6 CD cord-010027-r0tl01kq 849 18 weeks week NNS cord-010027-r0tl01kq 849 19 versus versus IN cord-010027-r0tl01kq 849 20 12 12 CD cord-010027-r0tl01kq 849 21 weeks week NNS cord-010027-r0tl01kq 849 22 between between IN cord-010027-r0tl01kq 849 23 CRT CRT NNP cord-010027-r0tl01kq 849 24 and and CC cord-010027-r0tl01kq 849 25 surgery surgery NN cord-010027-r0tl01kq 849 26 . . . cord-010027-r0tl01kq 850 1 Thirty thirty CD cord-010027-r0tl01kq 850 2 one one CD cord-010027-r0tl01kq 850 3 patients patient NNS cord-010027-r0tl01kq 850 4 were be VBD cord-010027-r0tl01kq 850 5 recruited recruit VBN cord-010027-r0tl01kq 850 6 from from IN cord-010027-r0tl01kq 850 7 seven seven CD cord-010027-r0tl01kq 850 8 UK UK NNP cord-010027-r0tl01kq 850 9 centres centre NNS cord-010027-r0tl01kq 850 10 between between IN cord-010027-r0tl01kq 850 11 June June NNP cord-010027-r0tl01kq 850 12 2012 2012 CD cord-010027-r0tl01kq 850 13 and and CC cord-010027-r0tl01kq 850 14 May May NNP cord-010027-r0tl01kq 850 15 2014 2014 CD cord-010027-r0tl01kq 850 16 . . . cord-010027-r0tl01kq 851 1 Photographs photograph NNS cord-010027-r0tl01kq 851 2 were be VBD cord-010027-r0tl01kq 851 3 taken take VBN cord-010027-r0tl01kq 851 4 of of IN cord-010027-r0tl01kq 851 5 the the DT cord-010027-r0tl01kq 851 6 specimens specimen NNS cord-010027-r0tl01kq 851 7 and and CC cord-010027-r0tl01kq 851 8 assessed assess VBN cord-010027-r0tl01kq 851 9 by by IN cord-010027-r0tl01kq 851 10 a a DT cord-010027-r0tl01kq 851 11 blinded blinded JJ cord-010027-r0tl01kq 851 12 histopathologist histopathologist NN cord-010027-r0tl01kq 851 13 for for IN cord-010027-r0tl01kq 851 14 the the DT cord-010027-r0tl01kq 851 15 quality quality NN cord-010027-r0tl01kq 851 16 of of IN cord-010027-r0tl01kq 851 17 the the DT cord-010027-r0tl01kq 851 18 mesorectal mesorectal JJ cord-010027-r0tl01kq 851 19 dissection dissection NN cord-010027-r0tl01kq 851 20 . . . cord-010027-r0tl01kq 852 1 Rates rate NNS cord-010027-r0tl01kq 852 2 of of IN cord-010027-r0tl01kq 852 3 pathological pathological JJ cord-010027-r0tl01kq 852 4 complete complete JJ cord-010027-r0tl01kq 852 5 response response NN cord-010027-r0tl01kq 852 6 ( ( -LRB- cord-010027-r0tl01kq 852 7 pCR pCR NNP cord-010027-r0tl01kq 852 8 ) ) -RRB- cord-010027-r0tl01kq 852 9 , , , cord-010027-r0tl01kq 852 10 down down RB cord-010027-r0tl01kq 852 11 - - HYPH cord-010027-r0tl01kq 852 12 staging staging NN cord-010027-r0tl01kq 852 13 , , , cord-010027-r0tl01kq 852 14 and and CC cord-010027-r0tl01kq 852 15 circumferential circumferential JJ cord-010027-r0tl01kq 852 16 resection resection NN cord-010027-r0tl01kq 852 17 margin margin NN cord-010027-r0tl01kq 852 18 ( ( -LRB- cord-010027-r0tl01kq 852 19 CRM CRM NNP cord-010027-r0tl01kq 852 20 ) ) -RRB- cord-010027-r0tl01kq 852 21 involvement involvement NN cord-010027-r0tl01kq 852 22 were be VBD cord-010027-r0tl01kq 852 23 determined determine VBN cord-010027-r0tl01kq 852 24 . . . cord-010027-r0tl01kq 853 1 Response response NN cord-010027-r0tl01kq 853 2 was be VBD cord-010027-r0tl01kq 853 3 also also RB cord-010027-r0tl01kq 853 4 assessed assess VBN cord-010027-r0tl01kq 853 5 using use VBG cord-010027-r0tl01kq 853 6 novel novel JJ cord-010027-r0tl01kq 853 7 tumour tumour NN cord-010027-r0tl01kq 853 8 cell cell NN cord-010027-r0tl01kq 853 9 density density NN cord-010027-r0tl01kq 853 10 ( ( -LRB- cord-010027-r0tl01kq 853 11 TCD TCD NNP cord-010027-r0tl01kq 853 12 ) ) -RRB- cord-010027-r0tl01kq 853 13 assessment assessment NN cord-010027-r0tl01kq 853 14 where where WRB cord-010027-r0tl01kq 853 15 the the DT cord-010027-r0tl01kq 853 16 slides slide NNS cord-010027-r0tl01kq 853 17 from from IN cord-010027-r0tl01kq 853 18 the the DT cord-010027-r0tl01kq 853 19 resected resected JJ cord-010027-r0tl01kq 853 20 specimen specimen JJ cord-010027-r0tl01kq 853 21 and and CC cord-010027-r0tl01kq 853 22 baseline baseline JJ cord-010027-r0tl01kq 853 23 biopsy biopsy NN cord-010027-r0tl01kq 853 24 were be VBD cord-010027-r0tl01kq 853 25 scanned scan VBN cord-010027-r0tl01kq 853 26 at at IN cord-010027-r0tl01kq 853 27 400x 400x CD cord-010027-r0tl01kq 853 28 magnification magnification NN cord-010027-r0tl01kq 853 29 , , , cord-010027-r0tl01kq 853 30 the the DT cord-010027-r0tl01kq 853 31 tumour tumour NN cord-010027-r0tl01kq 853 32 area area NN cord-010027-r0tl01kq 853 33 selected select VBN cord-010027-r0tl01kq 853 34 and and CC cord-010027-r0tl01kq 853 35 285 285 CD cord-010027-r0tl01kq 853 36 to to TO cord-010027-r0tl01kq 853 37 315 315 CD cord-010027-r0tl01kq 853 38 data data NN cord-010027-r0tl01kq 853 39 - - HYPH cord-010027-r0tl01kq 853 40 points point NNS cord-010027-r0tl01kq 853 41 analysed analyse VBN cord-010027-r0tl01kq 853 42 by by IN cord-010027-r0tl01kq 853 43 a a DT cord-010027-r0tl01kq 853 44 blinded blind VBN cord-010027-r0tl01kq 853 45 expert expert NN cord-010027-r0tl01kq 853 46 to to TO cord-010027-r0tl01kq 853 47 describe describe VB cord-010027-r0tl01kq 853 48 the the DT cord-010027-r0tl01kq 853 49 percentage percentage NN cord-010027-r0tl01kq 853 50 of of IN cord-010027-r0tl01kq 853 51 different different JJ cord-010027-r0tl01kq 853 52 tissue tissue NN cord-010027-r0tl01kq 853 53 components component NNS cord-010027-r0tl01kq 853 54 . . . cord-010027-r0tl01kq 854 1 The the DT cord-010027-r0tl01kq 854 2 work work NN cord-010027-r0tl01kq 854 3 was be VBD cord-010027-r0tl01kq 854 4 partly partly RB cord-010027-r0tl01kq 854 5 funded fund VBN cord-010027-r0tl01kq 854 6 by by IN cord-010027-r0tl01kq 854 7 a a DT cord-010027-r0tl01kq 854 8 PathSoc PathSoc NNP cord-010027-r0tl01kq 854 9 Career Career NNP cord-010027-r0tl01kq 854 10 Development Development NNP cord-010027-r0tl01kq 854 11 Fellowship Fellowship NNP cord-010027-r0tl01kq 854 12 and and CC cord-010027-r0tl01kq 854 13 is be VBZ cord-010027-r0tl01kq 854 14 presented present VBN cord-010027-r0tl01kq 854 15 on on IN cord-010027-r0tl01kq 854 16 behalf behalf NN cord-010027-r0tl01kq 854 17 of of IN cord-010027-r0tl01kq 854 18 the the DT cord-010027-r0tl01kq 854 19 STARRCAT STARRCAT NNP cord-010027-r0tl01kq 854 20 Trial Trial NNP cord-010027-r0tl01kq 854 21 Investigators Investigators NNPS cord-010027-r0tl01kq 854 22 . . . cord-010027-r0tl01kq 855 1 Twenty twenty CD cord-010027-r0tl01kq 855 2 three three CD cord-010027-r0tl01kq 855 3 patients patient NNS cord-010027-r0tl01kq 855 4 underwent undergo VBD cord-010027-r0tl01kq 855 5 surgery surgery NN cord-010027-r0tl01kq 855 6 ( ( -LRB- cord-010027-r0tl01kq 855 7 10 10 CD cord-010027-r0tl01kq 855 8 from from IN cord-010027-r0tl01kq 855 9 the the DT cord-010027-r0tl01kq 855 10 6-week 6-week JJ cord-010027-r0tl01kq 855 11 arm arm NN cord-010027-r0tl01kq 855 12 and and CC cord-010027-r0tl01kq 855 13 13 13 CD cord-010027-r0tl01kq 855 14 from from IN cord-010027-r0tl01kq 855 15 the the DT cord-010027-r0tl01kq 855 16 12-week 12-week JJ cord-010027-r0tl01kq 855 17 arm arm NN cord-010027-r0tl01kq 855 18 ) ) -RRB- cord-010027-r0tl01kq 855 19 . . . cord-010027-r0tl01kq 856 1 The the DT cord-010027-r0tl01kq 856 2 mesorectal mesorectal JJ cord-010027-r0tl01kq 856 3 fascial fascial JJ cord-010027-r0tl01kq 856 4 plane plane NN cord-010027-r0tl01kq 856 5 was be VBD cord-010027-r0tl01kq 856 6 intact intact JJ cord-010027-r0tl01kq 856 7 in in IN cord-010027-r0tl01kq 856 8 7 7 CD cord-010027-r0tl01kq 856 9 specimens specimen NNS cord-010027-r0tl01kq 856 10 from from IN cord-010027-r0tl01kq 856 11 the the DT cord-010027-r0tl01kq 856 12 6-week 6-week JJ cord-010027-r0tl01kq 856 13 arm arm NN cord-010027-r0tl01kq 856 14 ( ( -LRB- cord-010027-r0tl01kq 856 15 70 70 CD cord-010027-r0tl01kq 856 16 % % NN cord-010027-r0tl01kq 856 17 ) ) -RRB- cord-010027-r0tl01kq 856 18 and and CC cord-010027-r0tl01kq 856 19 8 8 CD cord-010027-r0tl01kq 856 20 from from IN cord-010027-r0tl01kq 856 21 the the DT cord-010027-r0tl01kq 856 22 12-week 12-week JJ cord-010027-r0tl01kq 856 23 arm arm NN cord-010027-r0tl01kq 856 24 ( ( -LRB- cord-010027-r0tl01kq 856 25 62 62 CD cord-010027-r0tl01kq 856 26 % % NN cord-010027-r0tl01kq 856 27 ) ) -RRB- cord-010027-r0tl01kq 856 28 . . . cord-010027-r0tl01kq 857 1 Three three CD cord-010027-r0tl01kq 857 2 patients patient NNS cord-010027-r0tl01kq 857 3 at at IN cord-010027-r0tl01kq 857 4 6-weeks 6-weeks CD cord-010027-r0tl01kq 857 5 and and CC cord-010027-r0tl01kq 857 6 two two CD cord-010027-r0tl01kq 857 7 patients patient NNS cord-010027-r0tl01kq 857 8 at at IN cord-010027-r0tl01kq 857 9 12-weeks 12-weeks CD cord-010027-r0tl01kq 857 10 showed show VBD cord-010027-r0tl01kq 857 11 a a DT cord-010027-r0tl01kq 857 12 pCR pcr NN cord-010027-r0tl01kq 857 13 . . . cord-010027-r0tl01kq 858 1 Only only RB cord-010027-r0tl01kq 858 2 one one CD cord-010027-r0tl01kq 858 3 patient patient NN cord-010027-r0tl01kq 858 4 ( ( -LRB- cord-010027-r0tl01kq 858 5 from from IN cord-010027-r0tl01kq 858 6 the the DT cord-010027-r0tl01kq 858 7 12-week 12-week JJ cord-010027-r0tl01kq 858 8 arm arm NN cord-010027-r0tl01kq 858 9 ) ) -RRB- cord-010027-r0tl01kq 858 10 had have VBD cord-010027-r0tl01kq 858 11 an an DT cord-010027-r0tl01kq 858 12 involved involved JJ cord-010027-r0tl01kq 858 13 CRM crm NN cord-010027-r0tl01kq 858 14 . . . cord-010027-r0tl01kq 859 1 TCD TCD NNP cord-010027-r0tl01kq 859 2 was be VBD cord-010027-r0tl01kq 859 3 0.3 0.3 CD cord-010027-r0tl01kq 859 4 % % NN cord-010027-r0tl01kq 859 5 for for IN cord-010027-r0tl01kq 859 6 the the DT cord-010027-r0tl01kq 859 7 6-week 6-week JJ cord-010027-r0tl01kq 859 8 arm arm NN cord-010027-r0tl01kq 859 9 and and CC cord-010027-r0tl01kq 859 10 4.3 4.3 CD cord-010027-r0tl01kq 859 11 % % NN cord-010027-r0tl01kq 859 12 for for IN cord-010027-r0tl01kq 859 13 the the DT cord-010027-r0tl01kq 859 14 12 12 CD cord-010027-r0tl01kq 859 15 week week NN cord-010027-r0tl01kq 859 16 arm arm NN cord-010027-r0tl01kq 859 17 ( ( -LRB- cord-010027-r0tl01kq 859 18 p=0.12 p=0.12 NN cord-010027-r0tl01kq 859 19 ) ) -RRB- cord-010027-r0tl01kq 859 20 . . . cord-010027-r0tl01kq 860 1 In in IN cord-010027-r0tl01kq 860 2 this this DT cord-010027-r0tl01kq 860 3 small small JJ cord-010027-r0tl01kq 860 4 randomised randomised JJ cord-010027-r0tl01kq 860 5 trial trial NN cord-010027-r0tl01kq 860 6 , , , cord-010027-r0tl01kq 860 7 rates rate NNS cord-010027-r0tl01kq 860 8 of of IN cord-010027-r0tl01kq 860 9 mesorectal mesorectal JJ cord-010027-r0tl01kq 860 10 quality quality NN cord-010027-r0tl01kq 860 11 , , , cord-010027-r0tl01kq 860 12 CRM CRM NNP cord-010027-r0tl01kq 860 13 status status NN cord-010027-r0tl01kq 860 14 , , , cord-010027-r0tl01kq 860 15 pCR pCR NNP cord-010027-r0tl01kq 860 16 and and CC cord-010027-r0tl01kq 860 17 TCD TCD NNP cord-010027-r0tl01kq 860 18 were be VBD cord-010027-r0tl01kq 860 19 similar similar JJ cord-010027-r0tl01kq 860 20 following follow VBG cord-010027-r0tl01kq 860 21 either either CC cord-010027-r0tl01kq 860 22 a a DT cord-010027-r0tl01kq 860 23 6 6 CD cord-010027-r0tl01kq 860 24 or or CC cord-010027-r0tl01kq 860 25 12 12 CD cord-010027-r0tl01kq 860 26 week week NN cord-010027-r0tl01kq 860 27 interval interval NN cord-010027-r0tl01kq 860 28 after after IN cord-010027-r0tl01kq 860 29 CRT CRT NNP cord-010027-r0tl01kq 860 30 . . . cord-010027-r0tl01kq 861 1 Further further JJ cord-010027-r0tl01kq 861 2 studies study NNS cord-010027-r0tl01kq 861 3 are be VBP cord-010027-r0tl01kq 861 4 now now RB cord-010027-r0tl01kq 861 5 needed need VBN cord-010027-r0tl01kq 861 6 to to TO cord-010027-r0tl01kq 861 7 clarify clarify VB cord-010027-r0tl01kq 861 8 whether whether IN cord-010027-r0tl01kq 861 9 a a DT cord-010027-r0tl01kq 861 10 longer long JJR cord-010027-r0tl01kq 861 11 interval interval NN cord-010027-r0tl01kq 861 12 does do VBZ cord-010027-r0tl01kq 861 13 facilitate facilitate VB cord-010027-r0tl01kq 861 14 on on IN cord-010027-r0tl01kq 861 15 going go VBG cord-010027-r0tl01kq 861 16 down down RB cord-010027-r0tl01kq 861 17 - - HYPH cord-010027-r0tl01kq 861 18 staging staging NN cord-010027-r0tl01kq 861 19 . . . cord-010027-r0tl01kq 862 1 The the DT cord-010027-r0tl01kq 862 2 Role role NN cord-010027-r0tl01kq 862 3 of of IN cord-010027-r0tl01kq 862 4 Tissue Tissue NNP cord-010027-r0tl01kq 862 5 Factor Factor NNP cord-010027-r0tl01kq 862 6 Pathway Pathway NNP cord-010027-r0tl01kq 862 7 Inhibitor Inhibitor NNP cord-010027-r0tl01kq 862 8 ( ( -LRB- cord-010027-r0tl01kq 862 9 TFPI TFPI NNP cord-010027-r0tl01kq 862 10 ) ) -RRB- cord-010027-r0tl01kq 862 11 in in IN cord-010027-r0tl01kq 862 12 Liver Liver NNP cord-010027-r0tl01kq 862 13 Injury Injury NNP cord-010027-r0tl01kq 862 14 P p NN cord-010027-r0tl01kq 862 15 G G NNP cord-010027-r0tl01kq 862 16 Petts Petts NNP cord-010027-r0tl01kq 862 17 1 1 CD cord-010027-r0tl01kq 862 18 ; ; : cord-010027-r0tl01kq 862 19 H H NNP cord-010027-r0tl01kq 862 20 Kudo Kudo NNP cord-010027-r0tl01kq 862 21 1 1 CD cord-010027-r0tl01kq 862 22 ; ; : cord-010027-r0tl01kq 862 23 A a DT cord-010027-r0tl01kq 862 24 Dorling Dorling NNP cord-010027-r0tl01kq 862 25 2 2 CD cord-010027-r0tl01kq 862 26 ; ; : cord-010027-r0tl01kq 862 27 M M NNP cord-010027-r0tl01kq 862 28 Thursz Thursz NNP cord-010027-r0tl01kq 862 29 1 1 CD cord-010027-r0tl01kq 862 30 ; ; : cord-010027-r0tl01kq 862 31 R R NNP cord-010027-r0tl01kq 862 32 Goldin Goldin NNP cord-010027-r0tl01kq 862 33 1 1 CD cord-010027-r0tl01kq 862 34 1 1 CD cord-010027-r0tl01kq 862 35 Imperial Imperial NNP cord-010027-r0tl01kq 862 36 College College NNP cord-010027-r0tl01kq 862 37 London London NNP cord-010027-r0tl01kq 862 38 , , , cord-010027-r0tl01kq 862 39 London London NNP cord-010027-r0tl01kq 862 40 , , , cord-010027-r0tl01kq 862 41 UK UK NNP cord-010027-r0tl01kq 862 42 ; ; : cord-010027-r0tl01kq 862 43 2 2 CD cord-010027-r0tl01kq 862 44 Kings Kings NNPS cord-010027-r0tl01kq 862 45 College College NNP cord-010027-r0tl01kq 862 46 London London NNP cord-010027-r0tl01kq 862 47 , , , cord-010027-r0tl01kq 862 48 London London NNP cord-010027-r0tl01kq 862 49 , , , cord-010027-r0tl01kq 863 1 UK UK NNP cord-010027-r0tl01kq 863 2 Introduction introduction NN cord-010027-r0tl01kq 863 3 : : : cord-010027-r0tl01kq 863 4 Studies study NNS cord-010027-r0tl01kq 863 5 have have VBP cord-010027-r0tl01kq 863 6 demonstrated demonstrate VBN cord-010027-r0tl01kq 863 7 that that IN cord-010027-r0tl01kq 863 8 inhibition inhibition NN cord-010027-r0tl01kq 863 9 of of IN cord-010027-r0tl01kq 863 10 the the DT cord-010027-r0tl01kq 863 11 coagulant coagulant NN cord-010027-r0tl01kq 863 12 cascade cascade NN cord-010027-r0tl01kq 863 13 is be VBZ cord-010027-r0tl01kq 863 14 associated associate VBN cord-010027-r0tl01kq 863 15 with with IN cord-010027-r0tl01kq 863 16 less less RBR cord-010027-r0tl01kq 863 17 advanced advanced JJ cord-010027-r0tl01kq 863 18 liver liver NN cord-010027-r0tl01kq 863 19 fibrosis fibrosis NN cord-010027-r0tl01kq 863 20 and and CC cord-010027-r0tl01kq 863 21 better well JJR cord-010027-r0tl01kq 863 22 outcome outcome NN cord-010027-r0tl01kq 863 23 in in IN cord-010027-r0tl01kq 863 24 acute acute JJ cord-010027-r0tl01kq 863 25 liver liver NN cord-010027-r0tl01kq 863 26 injury injury NN cord-010027-r0tl01kq 863 27 . . . cord-010027-r0tl01kq 864 1 TFPI TFPI NNP cord-010027-r0tl01kq 864 2 is be VBZ cord-010027-r0tl01kq 864 3 a a DT cord-010027-r0tl01kq 864 4 serine serine JJ cord-010027-r0tl01kq 864 5 protease protease NN cord-010027-r0tl01kq 864 6 inhibitor inhibitor NN cord-010027-r0tl01kq 864 7 that that WDT cord-010027-r0tl01kq 864 8 acts act VBZ cord-010027-r0tl01kq 864 9 as as IN cord-010027-r0tl01kq 864 10 a a DT cord-010027-r0tl01kq 864 11 homeostatic homeostatic JJ cord-010027-r0tl01kq 864 12 inhibitor inhibitor NN cord-010027-r0tl01kq 864 13 of of IN cord-010027-r0tl01kq 864 14 the the DT cord-010027-r0tl01kq 864 15 coagulation coagulation NN cord-010027-r0tl01kq 864 16 cascade cascade NN cord-010027-r0tl01kq 864 17 and and CC cord-010027-r0tl01kq 864 18 may may MD cord-010027-r0tl01kq 864 19 be be VB cord-010027-r0tl01kq 864 20 a a DT cord-010027-r0tl01kq 864 21 target target NN cord-010027-r0tl01kq 864 22 to to TO cord-010027-r0tl01kq 864 23 modify modify VB cord-010027-r0tl01kq 864 24 outcome outcome NN cord-010027-r0tl01kq 864 25 in in IN cord-010027-r0tl01kq 864 26 liver liver NN cord-010027-r0tl01kq 864 27 disease disease NN cord-010027-r0tl01kq 864 28 . . . cord-010027-r0tl01kq 865 1 Methods method NNS cord-010027-r0tl01kq 865 2 : : : cord-010027-r0tl01kq 865 3 Transgenic transgenic JJ cord-010027-r0tl01kq 865 4 mice mouse NNS cord-010027-r0tl01kq 865 5 carrying carry VBG cord-010027-r0tl01kq 865 6 a a DT cord-010027-r0tl01kq 865 7 genetic genetic JJ cord-010027-r0tl01kq 865 8 modification modification NN cord-010027-r0tl01kq 865 9 that that WDT cord-010027-r0tl01kq 865 10 allows allow VBZ cord-010027-r0tl01kq 865 11 cells cell NNS cord-010027-r0tl01kq 865 12 expressing express VBG cord-010027-r0tl01kq 865 13 a a DT cord-010027-r0tl01kq 865 14 - - HYPH cord-010027-r0tl01kq 865 15 smooth smooth JJ cord-010027-r0tl01kq 865 16 muscle muscle NN cord-010027-r0tl01kq 865 17 actin actin NN cord-010027-r0tl01kq 865 18 ( ( -LRB- cord-010027-r0tl01kq 865 19 aSMA aSMA NNP cord-010027-r0tl01kq 865 20 ; ; : cord-010027-r0tl01kq 865 21 e.g. e.g. RB cord-010027-r0tl01kq 865 22 activated activate VBN cord-010027-r0tl01kq 865 23 hepatic hepatic JJ cord-010027-r0tl01kq 865 24 stellate stellate JJ cord-010027-r0tl01kq 865 25 cells cell NNS cord-010027-r0tl01kq 865 26 ) ) -RRB- cord-010027-r0tl01kq 866 1 to to TO cord-010027-r0tl01kq 866 2 simultaneously simultaneously RB cord-010027-r0tl01kq 866 3 express express VB cord-010027-r0tl01kq 866 4 TFPI TFPI NNP cord-010027-r0tl01kq 866 5 were be VBD cord-010027-r0tl01kq 866 6 used use VBN cord-010027-r0tl01kq 866 7 in in IN cord-010027-r0tl01kq 866 8 models model NNS cord-010027-r0tl01kq 866 9 of of IN cord-010027-r0tl01kq 866 10 chronic chronic JJ cord-010027-r0tl01kq 866 11 liver liver NN cord-010027-r0tl01kq 866 12 injury injury NN cord-010027-r0tl01kq 866 13 ( ( -LRB- cord-010027-r0tl01kq 866 14 carbon carbon NN cord-010027-r0tl01kq 866 15 tetrachloride tetrachloride NN cord-010027-r0tl01kq 866 16 , , , cord-010027-r0tl01kq 866 17 CCl4 ccl4 NN cord-010027-r0tl01kq 866 18 ) ) -RRB- cord-010027-r0tl01kq 866 19 or or CC cord-010027-r0tl01kq 866 20 acute acute JJ cord-010027-r0tl01kq 866 21 liver liver NN cord-010027-r0tl01kq 866 22 injury injury NN cord-010027-r0tl01kq 866 23 ( ( -LRB- cord-010027-r0tl01kq 866 24 paracetamol paracetamol NNP cord-010027-r0tl01kq 866 25 ) ) -RRB- cord-010027-r0tl01kq 866 26 and and CC cord-010027-r0tl01kq 866 27 culled cull VBN cord-010027-r0tl01kq 866 28 at at IN cord-010027-r0tl01kq 866 29 set set VBN cord-010027-r0tl01kq 866 30 time time NN cord-010027-r0tl01kq 866 31 points point NNS cord-010027-r0tl01kq 866 32 after after IN cord-010027-r0tl01kq 866 33 dosing dose VBG cord-010027-r0tl01kq 866 34 . . . cord-010027-r0tl01kq 867 1 Results result NNS cord-010027-r0tl01kq 867 2 : : : cord-010027-r0tl01kq 867 3 Chronic chronic JJ cord-010027-r0tl01kq 867 4 liver liver NN cord-010027-r0tl01kq 867 5 injury injury NN cord-010027-r0tl01kq 867 6 : : : cord-010027-r0tl01kq 868 1 At at IN cord-010027-r0tl01kq 868 2 24 24 CD cord-010027-r0tl01kq 868 3 hours hour NNS cord-010027-r0tl01kq 868 4 after after IN cord-010027-r0tl01kq 868 5 the the DT cord-010027-r0tl01kq 868 6 last last JJ cord-010027-r0tl01kq 868 7 dose dose NN cord-010027-r0tl01kq 868 8 of of IN cord-010027-r0tl01kq 868 9 CCl4 ccl4 NN cord-010027-r0tl01kq 868 10 the the DT cord-010027-r0tl01kq 868 11 transgenic transgenic JJ cord-010027-r0tl01kq 868 12 mice mouse NNS cord-010027-r0tl01kq 868 13 had have VBD cord-010027-r0tl01kq 868 14 significantly significantly RB cord-010027-r0tl01kq 868 15 decreased decrease VBN cord-010027-r0tl01kq 868 16 aSMA asma JJ cord-010027-r0tl01kq 868 17 expression expression NN cord-010027-r0tl01kq 868 18 and and CC cord-010027-r0tl01kq 868 19 tissue tissue NN cord-010027-r0tl01kq 868 20 inhibitor inhibitor NN cord-010027-r0tl01kq 868 21 of of IN cord-010027-r0tl01kq 868 22 metalloproteinase metalloproteinase NN cord-010027-r0tl01kq 868 23 ( ( -LRB- cord-010027-r0tl01kq 868 24 TIMP TIMP NNP cord-010027-r0tl01kq 868 25 ) ) -RRB- cord-010027-r0tl01kq 869 1 -1 -1 . cord-010027-r0tl01kq 870 1 gene gene NN cord-010027-r0tl01kq 870 2 expression expression NN cord-010027-r0tl01kq 870 3 but but CC cord-010027-r0tl01kq 870 4 no no DT cord-010027-r0tl01kq 870 5 difference difference NN cord-010027-r0tl01kq 870 6 in in IN cord-010027-r0tl01kq 870 7 matrix matrix NN cord-010027-r0tl01kq 870 8 metalloproteinase metalloproteinase NN cord-010027-r0tl01kq 870 9 ( ( -LRB- cord-010027-r0tl01kq 870 10 MMP MMP NNP cord-010027-r0tl01kq 870 11 ) ) -RRB- cord-010027-r0tl01kq 870 12 -2 -2 XX cord-010027-r0tl01kq 870 13 and and CC cord-010027-r0tl01kq 870 14 -9 -9 NN cord-010027-r0tl01kq 870 15 gene gene NN cord-010027-r0tl01kq 870 16 expression expression NN cord-010027-r0tl01kq 870 17 compared compare VBN cord-010027-r0tl01kq 870 18 to to IN cord-010027-r0tl01kq 870 19 wild wild JJ cord-010027-r0tl01kq 870 20 types type NNS cord-010027-r0tl01kq 870 21 . . . cord-010027-r0tl01kq 871 1 This this DT cord-010027-r0tl01kq 871 2 suggested suggest VBD cord-010027-r0tl01kq 871 3 a a DT cord-010027-r0tl01kq 871 4 microenvironment microenvironment NN cord-010027-r0tl01kq 871 5 that that WDT cord-010027-r0tl01kq 871 6 would would MD cord-010027-r0tl01kq 871 7 promote promote VB cord-010027-r0tl01kq 871 8 fibrosis fibrosis NN cord-010027-r0tl01kq 871 9 resolution resolution NN cord-010027-r0tl01kq 871 10 . . . cord-010027-r0tl01kq 872 1 However however RB cord-010027-r0tl01kq 872 2 after after IN cord-010027-r0tl01kq 872 3 24 24 CD cord-010027-r0tl01kq 872 4 hours hour NNS cord-010027-r0tl01kq 872 5 this this DT cord-010027-r0tl01kq 872 6 difference difference NN cord-010027-r0tl01kq 872 7 was be VBD cord-010027-r0tl01kq 872 8 lost lose VBN cord-010027-r0tl01kq 872 9 . . . cord-010027-r0tl01kq 873 1 At at RB cord-010027-r0tl01kq 873 2 all all DT cord-010027-r0tl01kq 873 3 time time NN cord-010027-r0tl01kq 873 4 points point NNS cord-010027-r0tl01kq 873 5 there there EX cord-010027-r0tl01kq 873 6 was be VBD cord-010027-r0tl01kq 873 7 no no DT cord-010027-r0tl01kq 873 8 significant significant JJ cord-010027-r0tl01kq 873 9 difference difference NN cord-010027-r0tl01kq 873 10 between between IN cord-010027-r0tl01kq 873 11 fibrosis fibrosis NN cord-010027-r0tl01kq 873 12 in in IN cord-010027-r0tl01kq 873 13 transgenic transgenic JJ cord-010027-r0tl01kq 873 14 and and CC cord-010027-r0tl01kq 873 15 wild wild JJ cord-010027-r0tl01kq 873 16 type type NN cord-010027-r0tl01kq 873 17 mice mouse NNS cord-010027-r0tl01kq 873 18 as as IN cord-010027-r0tl01kq 873 19 demonstrated demonstrate VBN cord-010027-r0tl01kq 873 20 by by IN cord-010027-r0tl01kq 873 21 Sirius Sirius NNP cord-010027-r0tl01kq 873 22 red red JJ cord-010027-r0tl01kq 873 23 staining staining NN cord-010027-r0tl01kq 873 24 , , , cord-010027-r0tl01kq 873 25 hydroxyproline hydroxyproline NN cord-010027-r0tl01kq 873 26 assay assay NN cord-010027-r0tl01kq 873 27 and and CC cord-010027-r0tl01kq 873 28 collagen collagen NN cord-010027-r0tl01kq 873 29 1a1 1a1 CD cord-010027-r0tl01kq 873 30 gene gene NN cord-010027-r0tl01kq 873 31 expression expression NN cord-010027-r0tl01kq 873 32 . . . cord-010027-r0tl01kq 874 1 Acute acute JJ cord-010027-r0tl01kq 874 2 liver liver NN cord-010027-r0tl01kq 874 3 injury injury NN cord-010027-r0tl01kq 874 4 : : : cord-010027-r0tl01kq 875 1 In in IN cord-010027-r0tl01kq 875 2 paracetamol paracetamol NNP cord-010027-r0tl01kq 875 3 induced induce VBD cord-010027-r0tl01kq 875 4 liver liver NN cord-010027-r0tl01kq 875 5 injury injury NN cord-010027-r0tl01kq 875 6 there there EX cord-010027-r0tl01kq 875 7 was be VBD cord-010027-r0tl01kq 875 8 a a DT cord-010027-r0tl01kq 875 9 significant significant JJ cord-010027-r0tl01kq 875 10 difference difference NN cord-010027-r0tl01kq 875 11 in in IN cord-010027-r0tl01kq 875 12 parenchymal parenchymal JJ cord-010027-r0tl01kq 875 13 necrosis necrosis NN cord-010027-r0tl01kq 875 14 in in IN cord-010027-r0tl01kq 875 15 transgenic transgenic JJ cord-010027-r0tl01kq 875 16 mice mouse NNS cord-010027-r0tl01kq 875 17 compared compare VBN cord-010027-r0tl01kq 875 18 to to IN cord-010027-r0tl01kq 875 19 wild wild JJ cord-010027-r0tl01kq 875 20 types type NNS cord-010027-r0tl01kq 875 21 at at IN cord-010027-r0tl01kq 875 22 24 24 CD cord-010027-r0tl01kq 875 23 and and CC cord-010027-r0tl01kq 875 24 48 48 CD cord-010027-r0tl01kq 875 25 hours hour NNS cord-010027-r0tl01kq 875 26 after after IN cord-010027-r0tl01kq 875 27 dosing dose VBG cord-010027-r0tl01kq 875 28 ( ( -LRB- cord-010027-r0tl01kq 875 29 24 24 CD cord-010027-r0tl01kq 875 30 hours hour NNS cord-010027-r0tl01kq 875 31 : : : cord-010027-r0tl01kq 876 1 mean mean VB cord-010027-r0tl01kq 876 2 necrosis necrosis NN cord-010027-r0tl01kq 876 3 6 6 CD cord-010027-r0tl01kq 876 4 % % NN cord-010027-r0tl01kq 876 5 vs. vs. CC cord-010027-r0tl01kq 876 6 30 30 CD cord-010027-r0tl01kq 876 7 % % NN cord-010027-r0tl01kq 876 8 respectively respectively RB cord-010027-r0tl01kq 876 9 , , , cord-010027-r0tl01kq 876 10 Mann Mann NNP cord-010027-r0tl01kq 876 11 - - HYPH cord-010027-r0tl01kq 876 12 Whitney Whitney NNP cord-010027-r0tl01kq 876 13 test test NN cord-010027-r0tl01kq 876 14 p=0.008 p=0.008 NNP cord-010027-r0tl01kq 876 15 . . . cord-010027-r0tl01kq 877 1 48 48 CD cord-010027-r0tl01kq 877 2 hours hour NNS cord-010027-r0tl01kq 877 3 : : : cord-010027-r0tl01kq 878 1 mean mean VB cord-010027-r0tl01kq 878 2 necrosis necrosis NN cord-010027-r0tl01kq 878 3 2 2 CD cord-010027-r0tl01kq 878 4 % % NN cord-010027-r0tl01kq 878 5 vs. vs. CC cord-010027-r0tl01kq 878 6 20 20 CD cord-010027-r0tl01kq 878 7 % % NN cord-010027-r0tl01kq 878 8 respectively respectively RB cord-010027-r0tl01kq 878 9 , , , cord-010027-r0tl01kq 878 10 Mann Mann NNP cord-010027-r0tl01kq 878 11 - - HYPH cord-010027-r0tl01kq 878 12 Whitney Whitney NNP cord-010027-r0tl01kq 878 13 test test NN cord-010027-r0tl01kq 878 14 p=0.036 p=0.036 NNS cord-010027-r0tl01kq 878 15 ) ) -RRB- cord-010027-r0tl01kq 878 16 . . . cord-010027-r0tl01kq 879 1 Conclusion conclusion NN cord-010027-r0tl01kq 879 2 : : : cord-010027-r0tl01kq 880 1 These these DT cord-010027-r0tl01kq 880 2 results result NNS cord-010027-r0tl01kq 880 3 suggest suggest VBP cord-010027-r0tl01kq 880 4 that that IN cord-010027-r0tl01kq 880 5 TFPI TFPI NNP cord-010027-r0tl01kq 880 6 is be VBZ cord-010027-r0tl01kq 880 7 an an DT cord-010027-r0tl01kq 880 8 unlikely unlikely JJ cord-010027-r0tl01kq 880 9 therapeutic therapeutic JJ cord-010027-r0tl01kq 880 10 target target NN cord-010027-r0tl01kq 880 11 in in IN cord-010027-r0tl01kq 880 12 chronic chronic JJ cord-010027-r0tl01kq 880 13 liver liver NN cord-010027-r0tl01kq 880 14 injury injury NN cord-010027-r0tl01kq 880 15 . . . cord-010027-r0tl01kq 881 1 However however RB cord-010027-r0tl01kq 881 2 in in IN cord-010027-r0tl01kq 881 3 acute acute JJ cord-010027-r0tl01kq 881 4 paracetamol paracetamol NN cord-010027-r0tl01kq 881 5 induced induce VBD cord-010027-r0tl01kq 881 6 liver liver NN cord-010027-r0tl01kq 881 7 injury injury NN cord-010027-r0tl01kq 881 8 TFPI TFPI NNP cord-010027-r0tl01kq 881 9 appears appear VBZ cord-010027-r0tl01kq 881 10 to to TO cord-010027-r0tl01kq 881 11 rescue rescue VB cord-010027-r0tl01kq 881 12 the the DT cord-010027-r0tl01kq 881 13 injured injure VBN cord-010027-r0tl01kq 881 14 liver liver NN cord-010027-r0tl01kq 881 15 in in IN cord-010027-r0tl01kq 881 16 a a DT cord-010027-r0tl01kq 881 17 sustained sustained JJ cord-010027-r0tl01kq 881 18 manner manner NN cord-010027-r0tl01kq 881 19 from from IN cord-010027-r0tl01kq 881 20 24 24 CD cord-010027-r0tl01kq 881 21 hours hour NNS cord-010027-r0tl01kq 881 22 after after IN cord-010027-r0tl01kq 881 23 the the DT cord-010027-r0tl01kq 881 24 initial initial JJ cord-010027-r0tl01kq 881 25 insult insult NN cord-010027-r0tl01kq 881 26 and and CC cord-010027-r0tl01kq 881 27 suggests suggest VBZ cord-010027-r0tl01kq 881 28 a a DT cord-010027-r0tl01kq 881 29 role role NN cord-010027-r0tl01kq 881 30 for for IN cord-010027-r0tl01kq 881 31 TFPI TFPI NNP cord-010027-r0tl01kq 881 32 in in IN cord-010027-r0tl01kq 881 33 managing manage VBG cord-010027-r0tl01kq 881 34 acute acute JJ cord-010027-r0tl01kq 881 35 liver liver NN cord-010027-r0tl01kq 881 36 injury injury NN cord-010027-r0tl01kq 881 37 . . . cord-010027-r0tl01kq 882 1 ( ( -LRB- cord-010027-r0tl01kq 882 2 Research research NN cord-010027-r0tl01kq 882 3 funded fund VBN cord-010027-r0tl01kq 882 4 by by IN cord-010027-r0tl01kq 882 5 the the DT cord-010027-r0tl01kq 882 6 Pathological Pathological NNP cord-010027-r0tl01kq 882 7 Society Society NNP cord-010027-r0tl01kq 882 8 ) ) -RRB- cord-010027-r0tl01kq 882 9 . . . cord-010027-r0tl01kq 882 10 _SP cord-010027-r0tl01kq 883 1 Analysis analysis NN cord-010027-r0tl01kq 883 2 of of IN cord-010027-r0tl01kq 883 3 adenocarcinoma adenocarcinoma NN cord-010027-r0tl01kq 883 4 and and CC cord-010027-r0tl01kq 883 5 non non JJ cord-010027-r0tl01kq 883 6 - - JJ cord-010027-r0tl01kq 883 7 small small JJ cord-010027-r0tl01kq 883 8 cell cell NN cord-010027-r0tl01kq 883 9 lung lung NN cord-010027-r0tl01kq 883 10 cancer cancer NN cord-010027-r0tl01kq 883 11 ( ( -LRB- cord-010027-r0tl01kq 883 12 NOS NOS NNP cord-010027-r0tl01kq 883 13 ) ) -RRB- cord-010027-r0tl01kq 883 14 for for IN cord-010027-r0tl01kq 883 15 EGFR EGFR NNP cord-010027-r0tl01kq 883 16 mutations mutation NNS cord-010027-r0tl01kq 883 17 now now RB cord-010027-r0tl01kq 883 18 forms form VBZ cord-010027-r0tl01kq 883 19 part part NN cord-010027-r0tl01kq 883 20 of of IN cord-010027-r0tl01kq 883 21 the the DT cord-010027-r0tl01kq 883 22 Royal Royal NNP cord-010027-r0tl01kq 883 23 College College NNP cord-010027-r0tl01kq 883 24 of of IN cord-010027-r0tl01kq 883 25 Pathologists Pathologists NNPS cord-010027-r0tl01kq 883 26 ' ' POS cord-010027-r0tl01kq 883 27 lung lung NN cord-010027-r0tl01kq 883 28 cancer cancer NN cord-010027-r0tl01kq 883 29 dataset dataset NN cord-010027-r0tl01kq 883 30 . . . cord-010027-r0tl01kq 884 1 Identification identification NN cord-010027-r0tl01kq 884 2 of of IN cord-010027-r0tl01kq 884 3 patients patient NNS cord-010027-r0tl01kq 884 4 harbouring harbour VBG cord-010027-r0tl01kq 884 5 these these DT cord-010027-r0tl01kq 884 6 mutations mutation NNS cord-010027-r0tl01kq 884 7 facilitates facilitate VBZ cord-010027-r0tl01kq 884 8 delivery delivery NN cord-010027-r0tl01kq 884 9 of of IN cord-010027-r0tl01kq 884 10 targeted target VBN cord-010027-r0tl01kq 884 11 therapies therapy NNS cord-010027-r0tl01kq 884 12 with with IN cord-010027-r0tl01kq 884 13 superior superior JJ cord-010027-r0tl01kq 884 14 efficacy efficacy NN cord-010027-r0tl01kq 884 15 . . . cord-010027-r0tl01kq 885 1 Testing testing NN cord-010027-r0tl01kq 885 2 of of IN cord-010027-r0tl01kq 885 3 these these DT cord-010027-r0tl01kq 885 4 tumours tumour NNS cord-010027-r0tl01kq 885 5 for for IN cord-010027-r0tl01kq 885 6 ALK ALK NNP cord-010027-r0tl01kq 885 7 has have VBZ cord-010027-r0tl01kq 885 8 also also RB cord-010027-r0tl01kq 885 9 been be VBN cord-010027-r0tl01kq 885 10 introduced introduce VBN cord-010027-r0tl01kq 885 11 in in IN cord-010027-r0tl01kq 885 12 our -PRON- PRP$ cord-010027-r0tl01kq 885 13 centre centre NN cord-010027-r0tl01kq 885 14 . . . cord-010027-r0tl01kq 886 1 We -PRON- PRP cord-010027-r0tl01kq 886 2 assessed assess VBD cord-010027-r0tl01kq 886 3 our -PRON- PRP$ cord-010027-r0tl01kq 886 4 compliance compliance NN cord-010027-r0tl01kq 886 5 with with IN cord-010027-r0tl01kq 886 6 the the DT cord-010027-r0tl01kq 886 7 College College NNP cord-010027-r0tl01kq 886 8 guidelines guideline NNS cord-010027-r0tl01kq 886 9 in in IN cord-010027-r0tl01kq 886 10 this this DT cord-010027-r0tl01kq 886 11 area area NN cord-010027-r0tl01kq 886 12 for for IN cord-010027-r0tl01kq 886 13 2013 2013 CD cord-010027-r0tl01kq 886 14 and and CC cord-010027-r0tl01kq 886 15 2014 2014 CD cord-010027-r0tl01kq 886 16 . . . cord-010027-r0tl01kq 887 1 In in IN cord-010027-r0tl01kq 887 2 those those DT cord-010027-r0tl01kq 887 3 tumours tumour NNS cord-010027-r0tl01kq 887 4 positive positive JJ cord-010027-r0tl01kq 887 5 for for IN cord-010027-r0tl01kq 887 6 EGFR EGFR NNP cord-010027-r0tl01kq 887 7 or or CC cord-010027-r0tl01kq 887 8 ALK ALK NNP cord-010027-r0tl01kq 887 9 mutations mutation NNS cord-010027-r0tl01kq 887 10 , , , cord-010027-r0tl01kq 887 11 we -PRON- PRP cord-010027-r0tl01kq 887 12 examined examine VBD cord-010027-r0tl01kq 887 13 the the DT cord-010027-r0tl01kq 887 14 original original JJ cord-010027-r0tl01kq 887 15 sections section NNS cord-010027-r0tl01kq 887 16 to to TO cord-010027-r0tl01kq 887 17 assess assess VB cord-010027-r0tl01kq 887 18 any any DT cord-010027-r0tl01kq 887 19 correlation correlation NN cord-010027-r0tl01kq 887 20 between between IN cord-010027-r0tl01kq 887 21 mutation mutation NN cord-010027-r0tl01kq 887 22 status status NN cord-010027-r0tl01kq 887 23 and and CC cord-010027-r0tl01kq 887 24 morphological morphological JJ cord-010027-r0tl01kq 887 25 subtype subtype NN cord-010027-r0tl01kq 887 26 . . . cord-010027-r0tl01kq 888 1 96 96 CD cord-010027-r0tl01kq 888 2 of of IN cord-010027-r0tl01kq 888 3 the the DT cord-010027-r0tl01kq 888 4 116 116 CD cord-010027-r0tl01kq 888 5 appropriate appropriate JJ cord-010027-r0tl01kq 888 6 cases case NNS cord-010027-r0tl01kq 888 7 ( ( -LRB- cord-010027-r0tl01kq 888 8 83 83 CD cord-010027-r0tl01kq 888 9 % % NN cord-010027-r0tl01kq 888 10 ) ) -RRB- cord-010027-r0tl01kq 888 11 diagnosed diagnose VBN cord-010027-r0tl01kq 888 12 histologically histologically RB cord-010027-r0tl01kq 888 13 in in IN cord-010027-r0tl01kq 888 14 2013 2013 CD cord-010027-r0tl01kq 888 15 were be VBD cord-010027-r0tl01kq 888 16 sent send VBN cord-010027-r0tl01kq 888 17 for for IN cord-010027-r0tl01kq 888 18 EGFR EGFR NNP cord-010027-r0tl01kq 888 19 mutation mutation NN cord-010027-r0tl01kq 888 20 analysis analysis NN cord-010027-r0tl01kq 888 21 , , , cord-010027-r0tl01kq 888 22 increasing increase VBG cord-010027-r0tl01kq 888 23 to to IN cord-010027-r0tl01kq 888 24 183/190 183/190 CD cord-010027-r0tl01kq 888 25 ( ( -LRB- cord-010027-r0tl01kq 888 26 96 96 CD cord-010027-r0tl01kq 888 27 % % NN cord-010027-r0tl01kq 888 28 ) ) -RRB- cord-010027-r0tl01kq 888 29 in in IN cord-010027-r0tl01kq 888 30 2014 2014 CD cord-010027-r0tl01kq 888 31 . . . cord-010027-r0tl01kq 889 1 20 20 CD cord-010027-r0tl01kq 889 2 of of IN cord-010027-r0tl01kq 889 3 the the DT cord-010027-r0tl01kq 889 4 cases case NNS cord-010027-r0tl01kq 889 5 over over IN cord-010027-r0tl01kq 889 6 this this DT cord-010027-r0tl01kq 889 7 time time NN cord-010027-r0tl01kq 889 8 ( ( -LRB- cord-010027-r0tl01kq 889 9 7 7 CD cord-010027-r0tl01kq 889 10 % % NN cord-010027-r0tl01kq 889 11 ) ) -RRB- cord-010027-r0tl01kq 889 12 were be VBD cord-010027-r0tl01kq 889 13 positive positive JJ cord-010027-r0tl01kq 889 14 for for IN cord-010027-r0tl01kq 889 15 an an DT cord-010027-r0tl01kq 889 16 EGFR EGFR NNP cord-010027-r0tl01kq 889 17 mutation mutation NN cord-010027-r0tl01kq 889 18 . . . cord-010027-r0tl01kq 890 1 Of of IN cord-010027-r0tl01kq 890 2 these these DT cord-010027-r0tl01kq 890 3 , , , cord-010027-r0tl01kq 890 4 12 12 CD cord-010027-r0tl01kq 890 5 showed show VBD cord-010027-r0tl01kq 890 6 an an DT cord-010027-r0tl01kq 890 7 acinar acinar JJ cord-010027-r0tl01kq 890 8 growth growth NN cord-010027-r0tl01kq 890 9 pattern pattern NN cord-010027-r0tl01kq 890 10 , , , cord-010027-r0tl01kq 890 11 3 3 CD cord-010027-r0tl01kq 890 12 were be VBD cord-010027-r0tl01kq 890 13 solid solid JJ cord-010027-r0tl01kq 890 14 , , , cord-010027-r0tl01kq 890 15 1 1 CD cord-010027-r0tl01kq 890 16 lepidic lepidic NNP cord-010027-r0tl01kq 890 17 , , , cord-010027-r0tl01kq 890 18 1 1 CD cord-010027-r0tl01kq 890 19 papillary papillary JJ cord-010027-r0tl01kq 890 20 and and CC cord-010027-r0tl01kq 890 21 1 1 CD cord-010027-r0tl01kq 890 22 micropapillary micropapillary NN cord-010027-r0tl01kq 890 23 . . . cord-010027-r0tl01kq 891 1 It -PRON- PRP cord-010027-r0tl01kq 891 2 was be VBD cord-010027-r0tl01kq 891 3 not not RB cord-010027-r0tl01kq 891 4 possible possible JJ cord-010027-r0tl01kq 891 5 to to TO cord-010027-r0tl01kq 891 6 characterise characterise VB cord-010027-r0tl01kq 891 7 the the DT cord-010027-r0tl01kq 891 8 growth growth NN cord-010027-r0tl01kq 891 9 pattern pattern NN cord-010027-r0tl01kq 891 10 in in IN cord-010027-r0tl01kq 891 11 two two CD cord-010027-r0tl01kq 891 12 of of IN cord-010027-r0tl01kq 891 13 the the DT cord-010027-r0tl01kq 891 14 cases case NNS cord-010027-r0tl01kq 891 15 analysed analyse VBN cord-010027-r0tl01kq 891 16 as as IN cord-010027-r0tl01kq 891 17 cell cell NN cord-010027-r0tl01kq 891 18 blocks block NNS cord-010027-r0tl01kq 891 19 . . . cord-010027-r0tl01kq 892 1 The the DT cord-010027-r0tl01kq 892 2 most most RBS cord-010027-r0tl01kq 892 3 common common JJ cord-010027-r0tl01kq 892 4 mutation mutation NN cord-010027-r0tl01kq 892 5 , , , cord-010027-r0tl01kq 892 6 a a DT cord-010027-r0tl01kq 892 7 missense missense JJ cord-010027-r0tl01kq 892 8 mutation mutation NN cord-010027-r0tl01kq 892 9 at at IN cord-010027-r0tl01kq 892 10 codon codon NNP cord-010027-r0tl01kq 892 11 858 858 CD cord-010027-r0tl01kq 892 12 of of IN cord-010027-r0tl01kq 892 13 exon exon NNP cord-010027-r0tl01kq 892 14 21 21 CD cord-010027-r0tl01kq 892 15 , , , cord-010027-r0tl01kq 892 16 was be VBD cord-010027-r0tl01kq 892 17 most most RBS cord-010027-r0tl01kq 892 18 frequently frequently RB cord-010027-r0tl01kq 892 19 associated associate VBN cord-010027-r0tl01kq 892 20 with with IN cord-010027-r0tl01kq 892 21 an an DT cord-010027-r0tl01kq 892 22 acinar acinar JJ cord-010027-r0tl01kq 892 23 growth growth NN cord-010027-r0tl01kq 892 24 pattern pattern NN cord-010027-r0tl01kq 892 25 . . . cord-010027-r0tl01kq 893 1 Of of IN cord-010027-r0tl01kq 893 2 the the DT cord-010027-r0tl01kq 893 3 2013 2013 CD cord-010027-r0tl01kq 893 4 cases case NNS cord-010027-r0tl01kq 893 5 , , , cord-010027-r0tl01kq 893 6 22 22 CD cord-010027-r0tl01kq 893 7 ( ( -LRB- cord-010027-r0tl01kq 893 8 19 19 CD cord-010027-r0tl01kq 893 9 % % NN cord-010027-r0tl01kq 893 10 ) ) -RRB- cord-010027-r0tl01kq 893 11 were be VBD cord-010027-r0tl01kq 893 12 sent send VBN cord-010027-r0tl01kq 893 13 for for IN cord-010027-r0tl01kq 893 14 ALK ALK NNP cord-010027-r0tl01kq 893 15 mutation mutation NN cord-010027-r0tl01kq 893 16 analysis analysis NN cord-010027-r0tl01kq 893 17 , , , cord-010027-r0tl01kq 893 18 compared compare VBN cord-010027-r0tl01kq 893 19 with with IN cord-010027-r0tl01kq 893 20 152 152 CD cord-010027-r0tl01kq 893 21 ( ( -LRB- cord-010027-r0tl01kq 893 22 80 80 CD cord-010027-r0tl01kq 893 23 % % NN cord-010027-r0tl01kq 893 24 ) ) -RRB- cord-010027-r0tl01kq 893 25 in in IN cord-010027-r0tl01kq 893 26 2014 2014 CD cord-010027-r0tl01kq 893 27 . . . cord-010027-r0tl01kq 894 1 Both both DT cord-010027-r0tl01kq 894 2 of of IN cord-010027-r0tl01kq 894 3 the the DT cord-010027-r0tl01kq 894 4 two two CD cord-010027-r0tl01kq 894 5 cases case NNS cord-010027-r0tl01kq 894 6 with with IN cord-010027-r0tl01kq 894 7 an an DT cord-010027-r0tl01kq 894 8 ALK ALK NNP cord-010027-r0tl01kq 894 9 translocation translocation NN cord-010027-r0tl01kq 894 10 ( ( -LRB- cord-010027-r0tl01kq 894 11 2p23 2p23 CD cord-010027-r0tl01kq 894 12 rearrangement rearrangement NN cord-010027-r0tl01kq 894 13 ) ) -RRB- cord-010027-r0tl01kq 894 14 showed show VBD cord-010027-r0tl01kq 894 15 an an DT cord-010027-r0tl01kq 894 16 acinar acinar JJ cord-010027-r0tl01kq 894 17 growth growth NN cord-010027-r0tl01kq 894 18 pattern pattern NN cord-010027-r0tl01kq 894 19 . . . cord-010027-r0tl01kq 895 1 Our -PRON- PRP$ cord-010027-r0tl01kq 895 2 compliance compliance NN cord-010027-r0tl01kq 895 3 with with IN cord-010027-r0tl01kq 895 4 College College NNP cord-010027-r0tl01kq 895 5 guidelines guideline NNS cord-010027-r0tl01kq 895 6 in in IN cord-010027-r0tl01kq 895 7 sending send VBG cord-010027-r0tl01kq 895 8 appropriate appropriate JJ cord-010027-r0tl01kq 895 9 lung lung NN cord-010027-r0tl01kq 895 10 specimens specimen NNS cord-010027-r0tl01kq 895 11 for for IN cord-010027-r0tl01kq 895 12 mutation mutation NN cord-010027-r0tl01kq 895 13 analysis analysis NN cord-010027-r0tl01kq 895 14 is be VBZ cord-010027-r0tl01kq 895 15 improving improve VBG cord-010027-r0tl01kq 895 16 . . . cord-010027-r0tl01kq 896 1 The the DT cord-010027-r0tl01kq 896 2 correlations correlation NNS cord-010027-r0tl01kq 896 3 between between IN cord-010027-r0tl01kq 896 4 mutation mutation NN cord-010027-r0tl01kq 896 5 status status NN cord-010027-r0tl01kq 896 6 and and CC cord-010027-r0tl01kq 896 7 morphological morphological JJ cord-010027-r0tl01kq 896 8 subtype subtype NN cord-010027-r0tl01kq 896 9 add add VBP cord-010027-r0tl01kq 896 10 to to IN cord-010027-r0tl01kq 896 11 , , , cord-010027-r0tl01kq 896 12 and and CC cord-010027-r0tl01kq 896 13 are be VBP cord-010027-r0tl01kq 896 14 in in IN cord-010027-r0tl01kq 896 15 keeping keep VBG cord-010027-r0tl01kq 896 16 with with IN cord-010027-r0tl01kq 896 17 , , , cord-010027-r0tl01kq 896 18 the the DT cord-010027-r0tl01kq 896 19 current current JJ cord-010027-r0tl01kq 896 20 body body NN cord-010027-r0tl01kq 896 21 of of IN cord-010027-r0tl01kq 896 22 evidence evidence NN cord-010027-r0tl01kq 896 23 in in IN cord-010027-r0tl01kq 896 24 this this DT cord-010027-r0tl01kq 896 25 area area NN cord-010027-r0tl01kq 896 26 . . . cord-010027-r0tl01kq 897 1 Primary primary JJ cord-010027-r0tl01kq 897 2 Synovial Synovial NNP cord-010027-r0tl01kq 897 3 Sarcoma Sarcoma NNP cord-010027-r0tl01kq 897 4 of of IN cord-010027-r0tl01kq 897 5 the the DT cord-010027-r0tl01kq 897 6 Heart heart NN cord-010027-r0tl01kq 897 7 -An -an XX cord-010027-r0tl01kq 898 1 Interesting Interesting NNP cord-010027-r0tl01kq 898 2 Case Case NNP cord-010027-r0tl01kq 898 3 Report Report NNP cord-010027-r0tl01kq 898 4 and and CC cord-010027-r0tl01kq 898 5 Review Review NNP cord-010027-r0tl01kq 898 6 of of IN cord-010027-r0tl01kq 898 7 Literature Literature NNP cord-010027-r0tl01kq 898 8 P P NNP cord-010027-r0tl01kq 898 9 S S NNP cord-010027-r0tl01kq 898 10 Venkatesan Venkatesan NNP cord-010027-r0tl01kq 898 11 1 1 CD cord-010027-r0tl01kq 898 12 ; ; : cord-010027-r0tl01kq 898 13 P P NNP cord-010027-r0tl01kq 898 14 Sloan Sloan NNP cord-010027-r0tl01kq 898 15 1 1 CD cord-010027-r0tl01kq 898 16 ; ; : cord-010027-r0tl01kq 898 17 S S NNP cord-010027-r0tl01kq 898 18 Kendall Kendall NNP cord-010027-r0tl01kq 898 19 2 2 CD cord-010027-r0tl01kq 898 20 ; ; : cord-010027-r0tl01kq 898 21 M M NNP cord-010027-r0tl01kq 898 22 Giles Giles NNP cord-010027-r0tl01kq 898 23 2 2 CD cord-010027-r0tl01kq 898 24 1 1 CD cord-010027-r0tl01kq 898 25 Royal Royal NNP cord-010027-r0tl01kq 898 26 Victoria Victoria NNP cord-010027-r0tl01kq 898 27 Infirmary Infirmary NNP cord-010027-r0tl01kq 898 28 , , , cord-010027-r0tl01kq 898 29 Newcastle Newcastle NNP cord-010027-r0tl01kq 898 30 , , , cord-010027-r0tl01kq 898 31 UK UK NNP cord-010027-r0tl01kq 898 32 ; ; : cord-010027-r0tl01kq 898 33 2 2 CD cord-010027-r0tl01kq 898 34 James James NNP cord-010027-r0tl01kq 898 35 Cook Cook NNP cord-010027-r0tl01kq 898 36 University University NNP cord-010027-r0tl01kq 898 37 Hospital Hospital NNP cord-010027-r0tl01kq 898 38 , , , cord-010027-r0tl01kq 898 39 Middlesbrough Middlesbrough NNP cord-010027-r0tl01kq 898 40 , , , cord-010027-r0tl01kq 899 1 UK UK NNP cord-010027-r0tl01kq 899 2 Seventy seventy CD cord-010027-r0tl01kq 899 3 five five CD cord-010027-r0tl01kq 899 4 percent percent NN cord-010027-r0tl01kq 899 5 of of IN cord-010027-r0tl01kq 899 6 primary primary JJ cord-010027-r0tl01kq 899 7 cardiac cardiac JJ cord-010027-r0tl01kq 899 8 tumours tumour NNS cord-010027-r0tl01kq 899 9 are be VBP cord-010027-r0tl01kq 899 10 reported report VBN cord-010027-r0tl01kq 899 11 to to TO cord-010027-r0tl01kq 899 12 be be VB cord-010027-r0tl01kq 899 13 benign benign JJ cord-010027-r0tl01kq 899 14 atrial atrial JJ cord-010027-r0tl01kq 899 15 myxomas myxomas NN cord-010027-r0tl01kq 899 16 . . . cord-010027-r0tl01kq 900 1 The the DT cord-010027-r0tl01kq 900 2 remaining remain VBG cord-010027-r0tl01kq 900 3 are be VBP cord-010027-r0tl01kq 900 4 malignant malignant JJ cord-010027-r0tl01kq 900 5 tumours tumour NNS cord-010027-r0tl01kq 900 6 with with IN cord-010027-r0tl01kq 900 7 most most JJS cord-010027-r0tl01kq 900 8 of of IN cord-010027-r0tl01kq 900 9 them -PRON- PRP cord-010027-r0tl01kq 900 10 being be VBG cord-010027-r0tl01kq 900 11 sarcoma sarcoma NN cord-010027-r0tl01kq 900 12 , , , cord-010027-r0tl01kq 900 13 particularly particularly RB cord-010027-r0tl01kq 900 14 angiosarcoma angiosarcoma NNP cord-010027-r0tl01kq 900 15 and and CC cord-010027-r0tl01kq 900 16 malignant malignant JJ cord-010027-r0tl01kq 900 17 fibrous fibrous JJ cord-010027-r0tl01kq 900 18 histiocytoma histiocytoma NN cord-010027-r0tl01kq 900 19 . . . cord-010027-r0tl01kq 901 1 Synovial synovial JJ cord-010027-r0tl01kq 901 2 sarcoma sarcoma NN cord-010027-r0tl01kq 901 3 of of IN cord-010027-r0tl01kq 901 4 the the DT cord-010027-r0tl01kq 901 5 heart heart NN cord-010027-r0tl01kq 901 6 is be VBZ cord-010027-r0tl01kq 901 7 a a DT cord-010027-r0tl01kq 901 8 very very RB cord-010027-r0tl01kq 901 9 rare rare JJ cord-010027-r0tl01kq 901 10 malignancy malignancy NN cord-010027-r0tl01kq 901 11 accounting account VBG cord-010027-r0tl01kq 901 12 for for IN cord-010027-r0tl01kq 901 13 less less JJR cord-010027-r0tl01kq 901 14 than than IN cord-010027-r0tl01kq 901 15 1 1 CD cord-010027-r0tl01kq 901 16 % % NN cord-010027-r0tl01kq 901 17 of of IN cord-010027-r0tl01kq 901 18 all all DT cord-010027-r0tl01kq 901 19 primary primary JJ cord-010027-r0tl01kq 901 20 cardiac cardiac JJ cord-010027-r0tl01kq 901 21 tumours tumour NNS cord-010027-r0tl01kq 901 22 . . . cord-010027-r0tl01kq 902 1 Most Most JJS cord-010027-r0tl01kq 902 2 of of IN cord-010027-r0tl01kq 902 3 them -PRON- PRP cord-010027-r0tl01kq 902 4 arise arise VBP cord-010027-r0tl01kq 902 5 from from IN cord-010027-r0tl01kq 902 6 the the DT cord-010027-r0tl01kq 902 7 pericardium pericardium NN cord-010027-r0tl01kq 902 8 and and CC cord-010027-r0tl01kq 902 9 the the DT cord-010027-r0tl01kq 902 10 right right JJ cord-010027-r0tl01kq 902 11 side side NN cord-010027-r0tl01kq 902 12 of of IN cord-010027-r0tl01kq 902 13 the the DT cord-010027-r0tl01kq 902 14 heart heart NN cord-010027-r0tl01kq 902 15 and and CC cord-010027-r0tl01kq 902 16 is be VBZ cord-010027-r0tl01kq 902 17 considered consider VBN cord-010027-r0tl01kq 902 18 to to TO cord-010027-r0tl01kq 902 19 be be VB cord-010027-r0tl01kq 902 20 highly highly RB cord-010027-r0tl01kq 902 21 aggressive aggressive JJ cord-010027-r0tl01kq 902 22 with with IN cord-010027-r0tl01kq 902 23 reduced reduce VBN cord-010027-r0tl01kq 902 24 survival survival NN cord-010027-r0tl01kq 902 25 rates rate NNS cord-010027-r0tl01kq 902 26 . . . cord-010027-r0tl01kq 903 1 Diagnosis diagnosis NN cord-010027-r0tl01kq 903 2 in in IN cord-010027-r0tl01kq 903 3 these these DT cord-010027-r0tl01kq 903 4 rare rare JJ cord-010027-r0tl01kq 903 5 locations location NNS cord-010027-r0tl01kq 903 6 is be VBZ cord-010027-r0tl01kq 903 7 also also RB cord-010027-r0tl01kq 903 8 challenging challenging JJ cord-010027-r0tl01kq 903 9 . . . cord-010027-r0tl01kq 904 1 We -PRON- PRP cord-010027-r0tl01kq 904 2 report report VBP cord-010027-r0tl01kq 904 3 a a DT cord-010027-r0tl01kq 904 4 42-year 42-year JJ cord-010027-r0tl01kq 904 5 - - HYPH cord-010027-r0tl01kq 904 6 old old JJ cord-010027-r0tl01kq 904 7 gentleman gentleman NN cord-010027-r0tl01kq 904 8 who who WP cord-010027-r0tl01kq 904 9 presented present VBD cord-010027-r0tl01kq 904 10 to to IN cord-010027-r0tl01kq 904 11 us -PRON- PRP cord-010027-r0tl01kq 904 12 with with IN cord-010027-r0tl01kq 904 13 productive productive JJ cord-010027-r0tl01kq 904 14 cough cough NN cord-010027-r0tl01kq 904 15 , , , cord-010027-r0tl01kq 904 16 chest chest NN cord-010027-r0tl01kq 904 17 pain pain NN cord-010027-r0tl01kq 904 18 and and CC cord-010027-r0tl01kq 904 19 paroxysmal paroxysmal JJ cord-010027-r0tl01kq 904 20 nocturnal nocturnal JJ cord-010027-r0tl01kq 904 21 dyspnea dyspnea NN cord-010027-r0tl01kq 904 22 . . . cord-010027-r0tl01kq 905 1 Echocardiography echocardiography NN cord-010027-r0tl01kq 905 2 revealed reveal VBD cord-010027-r0tl01kq 905 3 a a DT cord-010027-r0tl01kq 905 4 calcified calcified JJ cord-010027-r0tl01kq 905 5 left left JJ cord-010027-r0tl01kq 905 6 atrial atrial JJ cord-010027-r0tl01kq 905 7 mass mass NN cord-010027-r0tl01kq 905 8 arising arise VBG cord-010027-r0tl01kq 905 9 from from IN cord-010027-r0tl01kq 905 10 the the DT cord-010027-r0tl01kq 905 11 posterior posterior JJ cord-010027-r0tl01kq 905 12 leaflet leaflet NN cord-010027-r0tl01kq 905 13 of of IN cord-010027-r0tl01kq 905 14 the the DT cord-010027-r0tl01kq 905 15 mitral mitral JJ cord-010027-r0tl01kq 905 16 valve valve NN cord-010027-r0tl01kq 905 17 and and CC cord-010027-r0tl01kq 905 18 radiologically radiologically RB cord-010027-r0tl01kq 905 19 was be VBD cord-010027-r0tl01kq 905 20 thought think VBN cord-010027-r0tl01kq 905 21 to to TO cord-010027-r0tl01kq 905 22 be be VB cord-010027-r0tl01kq 905 23 a a DT cord-010027-r0tl01kq 905 24 benign benign JJ cord-010027-r0tl01kq 905 25 atrial atrial JJ cord-010027-r0tl01kq 905 26 myxoma myxoma NN cord-010027-r0tl01kq 905 27 . . . cord-010027-r0tl01kq 906 1 Excision excision NN cord-010027-r0tl01kq 906 2 was be VBD cord-010027-r0tl01kq 906 3 planned plan VBN cord-010027-r0tl01kq 906 4 with with IN cord-010027-r0tl01kq 906 5 histology histology NN cord-010027-r0tl01kq 906 6 showing show VBG cord-010027-r0tl01kq 906 7 a a DT cord-010027-r0tl01kq 906 8 malignant malignant JJ cord-010027-r0tl01kq 906 9 biphasic biphasic JJ cord-010027-r0tl01kq 906 10 spindle spindle NN cord-010027-r0tl01kq 906 11 cell cell NN cord-010027-r0tl01kq 906 12 tumour tumour NN cord-010027-r0tl01kq 906 13 exhibiting exhibit VBG cord-010027-r0tl01kq 906 14 marked mark VBN cord-010027-r0tl01kq 906 15 cellular cellular JJ cord-010027-r0tl01kq 906 16 atypia atypia NN cord-010027-r0tl01kq 906 17 and and CC cord-010027-r0tl01kq 906 18 numerous numerous JJ cord-010027-r0tl01kq 906 19 mitoses mitose NNS cord-010027-r0tl01kq 906 20 . . . cord-010027-r0tl01kq 907 1 On on IN cord-010027-r0tl01kq 907 2 immunohistochemistry immunohistochemistry NN cord-010027-r0tl01kq 907 3 , , , cord-010027-r0tl01kq 907 4 the the DT cord-010027-r0tl01kq 907 5 glandular glandular JJ cord-010027-r0tl01kq 907 6 component component NN cord-010027-r0tl01kq 907 7 expressed express VBD cord-010027-r0tl01kq 907 8 diffuse diffuse JJ cord-010027-r0tl01kq 907 9 positive positive JJ cord-010027-r0tl01kq 907 10 staining staining NN cord-010027-r0tl01kq 907 11 for for IN cord-010027-r0tl01kq 907 12 Bcl-2 Bcl-2 NNP cord-010027-r0tl01kq 907 13 and and CC cord-010027-r0tl01kq 907 14 EMA EMA NNP cord-010027-r0tl01kq 907 15 with with IN cord-010027-r0tl01kq 907 16 focal focal JJ cord-010027-r0tl01kq 907 17 positive positive JJ cord-010027-r0tl01kq 907 18 staining staining NN cord-010027-r0tl01kq 907 19 for for IN cord-010027-r0tl01kq 907 20 pancytokeratins pancytokeratin NNS cord-010027-r0tl01kq 907 21 . . . cord-010027-r0tl01kq 908 1 The the DT cord-010027-r0tl01kq 908 2 spindle spindle NN cord-010027-r0tl01kq 908 3 cell cell NN cord-010027-r0tl01kq 908 4 component component NN cord-010027-r0tl01kq 908 5 expressed express VBD cord-010027-r0tl01kq 908 6 CD99 CD99 NNP cord-010027-r0tl01kq 908 7 and and CC cord-010027-r0tl01kq 908 8 EMA EMA NNP cord-010027-r0tl01kq 908 9 and and CC cord-010027-r0tl01kq 908 10 was be VBD cord-010027-r0tl01kq 908 11 found find VBN cord-010027-r0tl01kq 908 12 to to TO cord-010027-r0tl01kq 908 13 be be VB cord-010027-r0tl01kq 908 14 negative negative JJ cord-010027-r0tl01kq 908 15 for for IN cord-010027-r0tl01kq 908 16 CD34 CD34 NNP cord-010027-r0tl01kq 908 17 , , , cord-010027-r0tl01kq 908 18 S100 S100 NNP cord-010027-r0tl01kq 908 19 , , , cord-010027-r0tl01kq 908 20 desmin desmin NNP cord-010027-r0tl01kq 908 21 , , , cord-010027-r0tl01kq 908 22 Melan Melan NNP cord-010027-r0tl01kq 908 23 - - HYPH cord-010027-r0tl01kq 908 24 A A NNP cord-010027-r0tl01kq 908 25 and and CC cord-010027-r0tl01kq 908 26 HMB-45 HMB-45 NNP cord-010027-r0tl01kq 908 27 . . . cord-010027-r0tl01kq 909 1 Cytogenetic cytogenetic JJ cord-010027-r0tl01kq 909 2 testing testing NN cord-010027-r0tl01kq 909 3 revealed reveal VBD cord-010027-r0tl01kq 909 4 SS18-SSX1/2 SS18-SSX1/2 NNP cord-010027-r0tl01kq 909 5 gene gene NN cord-010027-r0tl01kq 909 6 fusion fusion NN cord-010027-r0tl01kq 909 7 with with IN cord-010027-r0tl01kq 909 8 SS18 SS18 NNP cord-010027-r0tl01kq 909 9 rearrangement rearrangement NN cord-010027-r0tl01kq 909 10 confirming confirm VBG cord-010027-r0tl01kq 909 11 the the DT cord-010027-r0tl01kq 909 12 diagnosis diagnosis NN cord-010027-r0tl01kq 909 13 of of IN cord-010027-r0tl01kq 909 14 synovial synovial JJ cord-010027-r0tl01kq 909 15 sarcoma sarcoma NN cord-010027-r0tl01kq 909 16 in in IN cord-010027-r0tl01kq 909 17 this this DT cord-010027-r0tl01kq 909 18 rare rare JJ cord-010027-r0tl01kq 909 19 location location NN cord-010027-r0tl01kq 909 20 . . . cord-010027-r0tl01kq 910 1 A a DT cord-010027-r0tl01kq 910 2 postoperative postoperative JJ cord-010027-r0tl01kq 910 3 computed compute VBN cord-010027-r0tl01kq 910 4 tomography tomography NN cord-010027-r0tl01kq 910 5 was be VBD cord-010027-r0tl01kq 910 6 performed perform VBN cord-010027-r0tl01kq 910 7 which which WDT cord-010027-r0tl01kq 910 8 showed show VBD cord-010027-r0tl01kq 910 9 no no DT cord-010027-r0tl01kq 910 10 evidence evidence NN cord-010027-r0tl01kq 910 11 of of IN cord-010027-r0tl01kq 910 12 metastasis metastasis NN cord-010027-r0tl01kq 910 13 or or CC cord-010027-r0tl01kq 910 14 primary primary JJ cord-010027-r0tl01kq 910 15 lesions lesion NNS cord-010027-r0tl01kq 910 16 elsewhere elsewhere RB cord-010027-r0tl01kq 910 17 . . . cord-010027-r0tl01kq 911 1 There there EX cord-010027-r0tl01kq 911 2 was be VBD cord-010027-r0tl01kq 911 3 excellent excellent JJ cord-010027-r0tl01kq 911 4 postoperative postoperative JJ cord-010027-r0tl01kq 911 5 surgical surgical JJ cord-010027-r0tl01kq 911 6 recovery recovery NN cord-010027-r0tl01kq 911 7 and and CC cord-010027-r0tl01kq 911 8 adjuvant adjuvant JJ cord-010027-r0tl01kq 912 1 chemotherapy chemotherapy NN cord-010027-r0tl01kq 912 2 was be VBD cord-010027-r0tl01kq 912 3 considered consider VBN cord-010027-r0tl01kq 912 4 in in IN cord-010027-r0tl01kq 912 5 the the DT cord-010027-r0tl01kq 912 6 multi multi JJ cord-010027-r0tl01kq 912 7 disciplinary disciplinary JJ cord-010027-r0tl01kq 912 8 meeting meeting NN cord-010027-r0tl01kq 912 9 . . . cord-010027-r0tl01kq 913 1 Primary primary JJ cord-010027-r0tl01kq 913 2 cardiac cardiac JJ cord-010027-r0tl01kq 913 3 synovial synovial JJ cord-010027-r0tl01kq 913 4 sarcoma sarcoma NN cord-010027-r0tl01kq 913 5 is be VBZ cord-010027-r0tl01kq 913 6 an an DT cord-010027-r0tl01kq 913 7 extremely extremely RB cord-010027-r0tl01kq 913 8 rare rare JJ cord-010027-r0tl01kq 913 9 malignancy malignancy NN cord-010027-r0tl01kq 913 10 especially especially RB cord-010027-r0tl01kq 913 11 when when WRB cord-010027-r0tl01kq 913 12 arising arise VBG cord-010027-r0tl01kq 913 13 from from IN cord-010027-r0tl01kq 913 14 the the DT cord-010027-r0tl01kq 913 15 left left JJ cord-010027-r0tl01kq 913 16 atrium atrium NN cord-010027-r0tl01kq 913 17 posing pose VBG cord-010027-r0tl01kq 913 18 diagnostic diagnostic JJ cord-010027-r0tl01kq 913 19 difficulty difficulty NN cord-010027-r0tl01kq 913 20 mimicking mimic VBG cord-010027-r0tl01kq 913 21 atrial atrial JJ cord-010027-r0tl01kq 913 22 myxoma myxoma NN cord-010027-r0tl01kq 913 23 . . . cord-010027-r0tl01kq 914 1 In in IN cord-010027-r0tl01kq 914 2 contrast contrast NN cord-010027-r0tl01kq 914 3 to to IN cord-010027-r0tl01kq 914 4 the the DT cord-010027-r0tl01kq 914 5 poor poor JJ cord-010027-r0tl01kq 914 6 prognosis prognosis NN cord-010027-r0tl01kq 914 7 mentioned mention VBN cord-010027-r0tl01kq 914 8 in in IN cord-010027-r0tl01kq 914 9 the the DT cord-010027-r0tl01kq 914 10 literatures literature NNS cord-010027-r0tl01kq 914 11 , , , cord-010027-r0tl01kq 914 12 there there EX cord-010027-r0tl01kq 914 13 was be VBD cord-010027-r0tl01kq 914 14 excellent excellent JJ cord-010027-r0tl01kq 914 15 recovery recovery NN cord-010027-r0tl01kq 914 16 in in IN cord-010027-r0tl01kq 914 17 this this DT cord-010027-r0tl01kq 914 18 gentleman gentleman NN cord-010027-r0tl01kq 914 19 . . . cord-010027-r0tl01kq 915 1 Swyer Swyer NNP cord-010027-r0tl01kq 915 2 - - HYPH cord-010027-r0tl01kq 915 3 James James NNP cord-010027-r0tl01kq 915 4 - - HYPH cord-010027-r0tl01kq 915 5 MacLeod MacLeod NNP cord-010027-r0tl01kq 915 6 syndrome syndrome NN cord-010027-r0tl01kq 915 7 ( ( -LRB- cord-010027-r0tl01kq 915 8 SJMLS SJMLS NNP cord-010027-r0tl01kq 915 9 ) ) -RRB- cord-010027-r0tl01kq 915 10 is be VBZ cord-010027-r0tl01kq 915 11 a a DT cord-010027-r0tl01kq 915 12 rare rare JJ cord-010027-r0tl01kq 915 13 lung lung NN cord-010027-r0tl01kq 915 14 condition condition NN cord-010027-r0tl01kq 915 15 that that WDT cord-010027-r0tl01kq 915 16 manifests manifest VBZ cord-010027-r0tl01kq 915 17 radiologically radiologically RB cord-010027-r0tl01kq 915 18 as as IN cord-010027-r0tl01kq 915 19 unilateral unilateral JJ cord-010027-r0tl01kq 915 20 hemithorax hemithorax NN cord-010027-r0tl01kq 915 21 lucency lucency NNP cord-010027-r0tl01kq 915 22 as as IN cord-010027-r0tl01kq 915 23 a a DT cord-010027-r0tl01kq 915 24 result result NN cord-010027-r0tl01kq 915 25 of of IN cord-010027-r0tl01kq 915 26 post post JJ cord-010027-r0tl01kq 915 27 - - JJ cord-010027-r0tl01kq 915 28 infectious infectious JJ cord-010027-r0tl01kq 915 29 obliterative obliterative JJ cord-010027-r0tl01kq 915 30 bronchiolitis bronchiolitis NN cord-010027-r0tl01kq 915 31 , , , cord-010027-r0tl01kq 915 32 leading lead VBG cord-010027-r0tl01kq 915 33 to to IN cord-010027-r0tl01kq 915 34 small small JJ cord-010027-r0tl01kq 915 35 airways airway NNS cord-010027-r0tl01kq 915 36 obstruction obstruction NN cord-010027-r0tl01kq 915 37 and and CC cord-010027-r0tl01kq 915 38 secondary secondary JJ cord-010027-r0tl01kq 915 39 emphysema emphysema NN cord-010027-r0tl01kq 915 40 . . . cord-010027-r0tl01kq 916 1 The the DT cord-010027-r0tl01kq 916 2 histological histological JJ cord-010027-r0tl01kq 916 3 features feature NNS cord-010027-r0tl01kq 916 4 of of IN cord-010027-r0tl01kq 916 5 SJMLS SJMLS NNP cord-010027-r0tl01kq 916 6 are be VBP cord-010027-r0tl01kq 916 7 poorly poorly RB cord-010027-r0tl01kq 916 8 and and CC cord-010027-r0tl01kq 916 9 infrequently infrequently RB cord-010027-r0tl01kq 916 10 described describe VBN cord-010027-r0tl01kq 916 11 . . . cord-010027-r0tl01kq 917 1 We -PRON- PRP cord-010027-r0tl01kq 917 2 present present VBP cord-010027-r0tl01kq 917 3 three three CD cord-010027-r0tl01kq 917 4 cases case NNS cord-010027-r0tl01kq 917 5 of of IN cord-010027-r0tl01kq 917 6 the the DT cord-010027-r0tl01kq 917 7 syndrome syndrome NN cord-010027-r0tl01kq 917 8 that that WDT cord-010027-r0tl01kq 917 9 underwent undergo VBD cord-010027-r0tl01kq 917 10 lobectomies lobectomy NNS cord-010027-r0tl01kq 917 11 in in IN cord-010027-r0tl01kq 917 12 our -PRON- PRP$ cord-010027-r0tl01kq 917 13 institution institution NN cord-010027-r0tl01kq 917 14 from from IN cord-010027-r0tl01kq 917 15 2013 2013 CD cord-010027-r0tl01kq 917 16 to to IN cord-010027-r0tl01kq 917 17 2015 2015 CD cord-010027-r0tl01kq 917 18 , , , cord-010027-r0tl01kq 917 19 in in IN cord-010027-r0tl01kq 917 20 three three CD cord-010027-r0tl01kq 917 21 women woman NNS cord-010027-r0tl01kq 917 22 , , , cord-010027-r0tl01kq 917 23 aged aged JJ cord-010027-r0tl01kq 917 24 , , , cord-010027-r0tl01kq 917 25 33 33 CD cord-010027-r0tl01kq 917 26 , , , cord-010027-r0tl01kq 917 27 46 46 CD cord-010027-r0tl01kq 917 28 and and CC cord-010027-r0tl01kq 917 29 22 22 CD cord-010027-r0tl01kq 917 30 years year NNS cord-010027-r0tl01kq 917 31 , , , cord-010027-r0tl01kq 917 32 presenting present VBG cord-010027-r0tl01kq 917 33 with with IN cord-010027-r0tl01kq 917 34 recurrent recurrent JJ cord-010027-r0tl01kq 917 35 lower low JJR cord-010027-r0tl01kq 917 36 respiratory respiratory JJ cord-010027-r0tl01kq 917 37 tract tract NN cord-010027-r0tl01kq 917 38 infection infection NN cord-010027-r0tl01kq 917 39 , , , cord-010027-r0tl01kq 917 40 shortness shortness NN cord-010027-r0tl01kq 917 41 of of IN cord-010027-r0tl01kq 917 42 breath breath NN cord-010027-r0tl01kq 917 43 and and CC cord-010027-r0tl01kq 917 44 pleuritic pleuritic JJ cord-010027-r0tl01kq 917 45 chest chest NN cord-010027-r0tl01kq 917 46 pain pain NN cord-010027-r0tl01kq 917 47 . . . cord-010027-r0tl01kq 918 1 Two two CD cord-010027-r0tl01kq 918 2 underwent undergo VBD cord-010027-r0tl01kq 918 3 left left JJ cord-010027-r0tl01kq 918 4 upper upper JJ cord-010027-r0tl01kq 918 5 lobectomies lobectomy NNS cord-010027-r0tl01kq 918 6 , , , cord-010027-r0tl01kq 918 7 one one CD cord-010027-r0tl01kq 918 8 left leave VBD cord-010027-r0tl01kq 918 9 lower low JJR cord-010027-r0tl01kq 918 10 lobectomy lobectomy NN cord-010027-r0tl01kq 918 11 . . . cord-010027-r0tl01kq 919 1 The the DT cord-010027-r0tl01kq 919 2 first first JJ cord-010027-r0tl01kq 919 3 case case NN cord-010027-r0tl01kq 919 4 demonstrated demonstrate VBD cord-010027-r0tl01kq 919 5 hyperlucency hyperlucency NN cord-010027-r0tl01kq 919 6 of of IN cord-010027-r0tl01kq 919 7 the the DT cord-010027-r0tl01kq 919 8 affected affect VBN cord-010027-r0tl01kq 919 9 lobe lobe NN cord-010027-r0tl01kq 919 10 with with IN cord-010027-r0tl01kq 919 11 markedly markedly RB cord-010027-r0tl01kq 919 12 reduced reduce VBN cord-010027-r0tl01kq 919 13 blood blood NN cord-010027-r0tl01kq 919 14 vessel vessel NN cord-010027-r0tl01kq 919 15 attenuation attenuation NN cord-010027-r0tl01kq 919 16 . . . cord-010027-r0tl01kq 920 1 The the DT cord-010027-r0tl01kq 920 2 radiological radiological JJ cord-010027-r0tl01kq 920 3 findings finding NNS cord-010027-r0tl01kq 920 4 of of IN cord-010027-r0tl01kq 920 5 the the DT cord-010027-r0tl01kq 920 6 second second JJ cord-010027-r0tl01kq 920 7 case case NN cord-010027-r0tl01kq 920 8 were be VBD cord-010027-r0tl01kq 920 9 of of IN cord-010027-r0tl01kq 920 10 extensive extensive JJ cord-010027-r0tl01kq 920 11 bronchiectasis bronchiectasis NN cord-010027-r0tl01kq 920 12 , , , cord-010027-r0tl01kq 920 13 hyperlucency hyperlucency NN cord-010027-r0tl01kq 920 14 , , , cord-010027-r0tl01kq 920 15 mucus mucus NN cord-010027-r0tl01kq 920 16 plugging plugging NN cord-010027-r0tl01kq 920 17 and and CC cord-010027-r0tl01kq 920 18 hypervascularity hypervascularity NN cord-010027-r0tl01kq 920 19 . . . cord-010027-r0tl01kq 921 1 The the DT cord-010027-r0tl01kq 921 2 radiological radiological JJ cord-010027-r0tl01kq 921 3 findings finding NNS cord-010027-r0tl01kq 921 4 of of IN cord-010027-r0tl01kq 921 5 the the DT cord-010027-r0tl01kq 921 6 third third JJ cord-010027-r0tl01kq 921 7 case case NN cord-010027-r0tl01kq 921 8 were be VBD cord-010027-r0tl01kq 921 9 of of IN cord-010027-r0tl01kq 921 10 an an DT cord-010027-r0tl01kq 921 11 apical apical JJ cord-010027-r0tl01kq 921 12 bulla bulla NN cord-010027-r0tl01kq 921 13 and and CC cord-010027-r0tl01kq 921 14 upper upper JJ cord-010027-r0tl01kq 921 15 lobe lobe NN cord-010027-r0tl01kq 921 16 cavitating cavitate VBG cord-010027-r0tl01kq 921 17 lesion lesion NN cord-010027-r0tl01kq 921 18 with with IN cord-010027-r0tl01kq 921 19 lobar lobar NNP cord-010027-r0tl01kq 921 20 hypolucency hypolucency NNP cord-010027-r0tl01kq 921 21 and and CC cord-010027-r0tl01kq 921 22 hypoperfusion hypoperfusion NN cord-010027-r0tl01kq 921 23 . . . cord-010027-r0tl01kq 922 1 The the DT cord-010027-r0tl01kq 922 2 main main JJ cord-010027-r0tl01kq 922 3 histological histological JJ cord-010027-r0tl01kq 922 4 findings finding NNS cord-010027-r0tl01kq 922 5 were be VBD cord-010027-r0tl01kq 922 6 bronchiolar bronchiolar JJ cord-010027-r0tl01kq 922 7 changes change NNS cord-010027-r0tl01kq 922 8 with with IN cord-010027-r0tl01kq 922 9 bronchiolectasis bronchiolectasis NNP cord-010027-r0tl01kq 922 10 , , , cord-010027-r0tl01kq 922 11 mucus mucus NN cord-010027-r0tl01kq 922 12 plugging plugging NN cord-010027-r0tl01kq 922 13 , , , cord-010027-r0tl01kq 922 14 constrictive constrictive JJ cord-010027-r0tl01kq 922 15 / / SYM cord-010027-r0tl01kq 922 16 obliterative obliterative JJ cord-010027-r0tl01kq 922 17 bronchiolitis bronchiolitis NN cord-010027-r0tl01kq 922 18 and and CC cord-010027-r0tl01kq 922 19 various various JJ cord-010027-r0tl01kq 922 20 degree degree NN cord-010027-r0tl01kq 922 21 of of IN cord-010027-r0tl01kq 922 22 peribronchiolar peribronchiolar JJ cord-010027-r0tl01kq 922 23 inflammation inflammation NN cord-010027-r0tl01kq 922 24 . . . cord-010027-r0tl01kq 923 1 Emphysema emphysema NN cord-010027-r0tl01kq 923 2 was be VBD cord-010027-r0tl01kq 923 3 mild mild JJ cord-010027-r0tl01kq 923 4 and and CC cord-010027-r0tl01kq 923 5 diagnosed diagnose VBN cord-010027-r0tl01kq 923 6 as as IN cord-010027-r0tl01kq 923 7 loss loss NN cord-010027-r0tl01kq 923 8 of of IN cord-010027-r0tl01kq 923 9 attachment attachment NN cord-010027-r0tl01kq 923 10 of of IN cord-010027-r0tl01kq 923 11 alveolar alveolar JJ cord-010027-r0tl01kq 923 12 walls wall NNS cord-010027-r0tl01kq 923 13 . . . cord-010027-r0tl01kq 924 1 In in IN cord-010027-r0tl01kq 924 2 addition addition NN cord-010027-r0tl01kq 924 3 , , , cord-010027-r0tl01kq 924 4 Case case NN cord-010027-r0tl01kq 924 5 1 1 CD cord-010027-r0tl01kq 924 6 had have VBD cord-010027-r0tl01kq 924 7 dystrophic dystrophic JJ cord-010027-r0tl01kq 924 8 , , , cord-010027-r0tl01kq 924 9 hypoplastic hypoplastic JJ cord-010027-r0tl01kq 924 10 or or CC cord-010027-r0tl01kq 924 11 absent absent JJ cord-010027-r0tl01kq 924 12 branches branch NNS cord-010027-r0tl01kq 924 13 of of IN cord-010027-r0tl01kq 924 14 the the DT cord-010027-r0tl01kq 924 15 pulmonary pulmonary JJ cord-010027-r0tl01kq 924 16 arteries artery NNS cord-010027-r0tl01kq 924 17 . . . cord-010027-r0tl01kq 925 1 Case case NN cord-010027-r0tl01kq 925 2 2 2 CD cord-010027-r0tl01kq 925 3 showed show VBD cord-010027-r0tl01kq 925 4 prominent prominent JJ cord-010027-r0tl01kq 925 5 bronchial bronchial JJ cord-010027-r0tl01kq 925 6 arterioles arteriole NNS cord-010027-r0tl01kq 925 7 and and CC cord-010027-r0tl01kq 925 8 abnormal abnormal JJ cord-010027-r0tl01kq 925 9 tortuous tortuous JJ cord-010027-r0tl01kq 925 10 dilated dilated JJ cord-010027-r0tl01kq 925 11 pulmonary pulmonary JJ cord-010027-r0tl01kq 925 12 arteries artery NNS cord-010027-r0tl01kq 925 13 and and CC cord-010027-r0tl01kq 925 14 veins vein NNS cord-010027-r0tl01kq 925 15 . . . cord-010027-r0tl01kq 926 1 Case case NN cord-010027-r0tl01kq 926 2 3 3 CD cord-010027-r0tl01kq 926 3 had have VBD cord-010027-r0tl01kq 926 4 established establish VBN cord-010027-r0tl01kq 926 5 bronchiolar bronchiolar JJ cord-010027-r0tl01kq 926 6 scars scar NNS cord-010027-r0tl01kq 926 7 in in IN cord-010027-r0tl01kq 926 8 the the DT cord-010027-r0tl01kq 926 9 bronchovascular bronchovascular JJ cord-010027-r0tl01kq 926 10 bundles bundle NNS cord-010027-r0tl01kq 926 11 , , , cord-010027-r0tl01kq 926 12 pleural pleural JJ cord-010027-r0tl01kq 926 13 arteries artery NNS cord-010027-r0tl01kq 926 14 showed show VBD cord-010027-r0tl01kq 926 15 medial medial JJ cord-010027-r0tl01kq 926 16 hypertrophy hypertrophy NN cord-010027-r0tl01kq 926 17 and and CC cord-010027-r0tl01kq 926 18 the the DT cord-010027-r0tl01kq 926 19 interlobular interlobular NNP cord-010027-r0tl01kq 926 20 septa septa NNP cord-010027-r0tl01kq 926 21 contained contain VBD cord-010027-r0tl01kq 926 22 dilated dilated JJ cord-010027-r0tl01kq 926 23 prominent prominent JJ cord-010027-r0tl01kq 926 24 veins vein NNS cord-010027-r0tl01kq 926 25 , , , cord-010027-r0tl01kq 926 26 as as RB cord-010027-r0tl01kq 926 27 well well RB cord-010027-r0tl01kq 926 28 as as IN cord-010027-r0tl01kq 926 29 cystically cystically RB cord-010027-r0tl01kq 926 30 dilated dilate VBD cord-010027-r0tl01kq 926 31 inflamed inflamed JJ cord-010027-r0tl01kq 926 32 peripheral peripheral JJ cord-010027-r0tl01kq 926 33 bronchus bronchus NN cord-010027-r0tl01kq 926 34 . . . cord-010027-r0tl01kq 927 1 These these DT cord-010027-r0tl01kq 927 2 cases case NNS cord-010027-r0tl01kq 927 3 highlight highlight VBP cord-010027-r0tl01kq 927 4 the the DT cord-010027-r0tl01kq 927 5 importance importance NN cord-010027-r0tl01kq 927 6 of of IN cord-010027-r0tl01kq 927 7 vascular vascular JJ cord-010027-r0tl01kq 927 8 changes change NNS cord-010027-r0tl01kq 927 9 in in IN cord-010027-r0tl01kq 927 10 SJMLS SJMLS NNP cord-010027-r0tl01kq 927 11 , , , cord-010027-r0tl01kq 927 12 likely likely RB cord-010027-r0tl01kq 927 13 secondary secondary JJ cord-010027-r0tl01kq 927 14 to to IN cord-010027-r0tl01kq 927 15 the the DT cord-010027-r0tl01kq 927 16 bronchiolar bronchiolar JJ cord-010027-r0tl01kq 927 17 inflammation inflammation NN cord-010027-r0tl01kq 927 18 and and CC cord-010027-r0tl01kq 927 19 destruction destruction NN cord-010027-r0tl01kq 927 20 leading lead VBG cord-010027-r0tl01kq 927 21 to to IN cord-010027-r0tl01kq 927 22 capillary capillary JJ cord-010027-r0tl01kq 927 23 bed bed NN cord-010027-r0tl01kq 927 24 destruction destruction NN cord-010027-r0tl01kq 927 25 from from IN cord-010027-r0tl01kq 927 26 secondary secondary JJ cord-010027-r0tl01kq 927 27 emphysema emphysema NN cord-010027-r0tl01kq 927 28 and and CC cord-010027-r0tl01kq 927 29 reactive reactive JJ cord-010027-r0tl01kq 927 30 pulmonary pulmonary JJ cord-010027-r0tl01kq 927 31 and and CC cord-010027-r0tl01kq 927 32 arterial arterial JJ cord-010027-r0tl01kq 927 33 changes change NNS cord-010027-r0tl01kq 927 34 . . . cord-010027-r0tl01kq 928 1 Mediastinal Mediastinal NNP cord-010027-r0tl01kq 928 2 nodal nodal JJ cord-010027-r0tl01kq 928 3 staging staging NN cord-010027-r0tl01kq 928 4 with with IN cord-010027-r0tl01kq 928 5 EBUS EBUS NNP cord-010027-r0tl01kq 928 6 is be VBZ cord-010027-r0tl01kq 928 7 recommended recommend VBN cord-010027-r0tl01kq 928 8 for for IN cord-010027-r0tl01kq 928 9 patients patient NNS cord-010027-r0tl01kq 928 10 with with IN cord-010027-r0tl01kq 928 11 resectable resectable JJ cord-010027-r0tl01kq 928 12 non non JJ cord-010027-r0tl01kq 928 13 - - JJ cord-010027-r0tl01kq 928 14 small small JJ cord-010027-r0tl01kq 928 15 cell cell NN cord-010027-r0tl01kq 928 16 lung lung NN cord-010027-r0tl01kq 928 17 cancer cancer NN cord-010027-r0tl01kq 928 18 and and CC cord-010027-r0tl01kq 928 19 has have VBZ cord-010027-r0tl01kq 928 20 emerged emerge VBN cord-010027-r0tl01kq 928 21 as as IN cord-010027-r0tl01kq 928 22 a a DT cord-010027-r0tl01kq 928 23 safe safe JJ cord-010027-r0tl01kq 928 24 tool tool NN cord-010027-r0tl01kq 928 25 to to TO cord-010027-r0tl01kq 928 26 establish establish VB cord-010027-r0tl01kq 928 27 granulomatous granulomatous JJ cord-010027-r0tl01kq 928 28 pathology pathology NN cord-010027-r0tl01kq 928 29 in in IN cord-010027-r0tl01kq 928 30 suspected suspect VBN cord-010027-r0tl01kq 928 31 sarcoidosis sarcoidosis NN cord-010027-r0tl01kq 928 32 . . . cord-010027-r0tl01kq 929 1 We -PRON- PRP cord-010027-r0tl01kq 929 2 conducted conduct VBD cord-010027-r0tl01kq 929 3 a a DT cord-010027-r0tl01kq 929 4 retrospective retrospective JJ cord-010027-r0tl01kq 929 5 analysis analysis NN cord-010027-r0tl01kq 929 6 of of IN cord-010027-r0tl01kq 929 7 the the DT cord-010027-r0tl01kq 929 8 outcomes outcome NNS cord-010027-r0tl01kq 929 9 of of IN cord-010027-r0tl01kq 929 10 EBUS EBUS NNP cord-010027-r0tl01kq 929 11 performed perform VBD cord-010027-r0tl01kq 929 12 in in IN cord-010027-r0tl01kq 929 13 a a DT cord-010027-r0tl01kq 929 14 large large JJ cord-010027-r0tl01kq 929 15 teaching teaching NN cord-010027-r0tl01kq 929 16 university university NN cord-010027-r0tl01kq 929 17 hospital hospital NN cord-010027-r0tl01kq 929 18 with with IN cord-010027-r0tl01kq 929 19 a a DT cord-010027-r0tl01kq 929 20 rapid rapid JJ cord-010027-r0tl01kq 929 21 access access NN cord-010027-r0tl01kq 929 22 lung lung NN cord-010027-r0tl01kq 929 23 clinic clinic NN cord-010027-r0tl01kq 929 24 over over IN cord-010027-r0tl01kq 929 25 a a DT cord-010027-r0tl01kq 929 26 12 12 CD cord-010027-r0tl01kq 929 27 month month NN cord-010027-r0tl01kq 929 28 period period NN cord-010027-r0tl01kq 929 29 and and CC cord-010027-r0tl01kq 929 30 correlation correlation NN cord-010027-r0tl01kq 929 31 with with IN cord-010027-r0tl01kq 929 32 endobronchial endobronchial NNP cord-010027-r0tl01kq 929 33 and and CC cord-010027-r0tl01kq 929 34 CT CT NNP cord-010027-r0tl01kq 929 35 guided guide VBN cord-010027-r0tl01kq 929 36 biopsies biopsy NNS cord-010027-r0tl01kq 929 37 , , , cord-010027-r0tl01kq 929 38 and and CC cord-010027-r0tl01kq 929 39 surgical surgical JJ cord-010027-r0tl01kq 929 40 resections resection NNS cord-010027-r0tl01kq 929 41 , , , cord-010027-r0tl01kq 929 42 when when WRB cord-010027-r0tl01kq 929 43 available available JJ cord-010027-r0tl01kq 929 44 , , , cord-010027-r0tl01kq 929 45 and and CC cord-010027-r0tl01kq 929 46 compared compare VBD cord-010027-r0tl01kq 929 47 the the DT cord-010027-r0tl01kq 929 48 adequacy adequacy NN cord-010027-r0tl01kq 929 49 of of IN cord-010027-r0tl01kq 929 50 EBUS EBUS NNP cord-010027-r0tl01kq 929 51 when when WRB cord-010027-r0tl01kq 929 52 performed perform VBN cord-010027-r0tl01kq 929 53 with with IN cord-010027-r0tl01kq 929 54 and and CC cord-010027-r0tl01kq 929 55 without without IN cord-010027-r0tl01kq 929 56 rapid rapid JJ cord-010027-r0tl01kq 929 57 on on IN cord-010027-r0tl01kq 929 58 - - HYPH cord-010027-r0tl01kq 929 59 site site NN cord-010027-r0tl01kq 929 60 evaluation evaluation NN cord-010027-r0tl01kq 929 61 ( ( -LRB- cord-010027-r0tl01kq 929 62 ROSE ROSE NNP cord-010027-r0tl01kq 929 63 Background Background NNP cord-010027-r0tl01kq 929 64 and and CC cord-010027-r0tl01kq 929 65 aims aim VBZ cord-010027-r0tl01kq 929 66 : : : cord-010027-r0tl01kq 929 67 In in IN cord-010027-r0tl01kq 929 68 Interstitial interstitial JJ cord-010027-r0tl01kq 929 69 lung lung NN cord-010027-r0tl01kq 929 70 disease disease NN cord-010027-r0tl01kq 929 71 ( ( -LRB- cord-010027-r0tl01kq 929 72 ILD ILD NNP cord-010027-r0tl01kq 929 73 ) ) -RRB- cord-010027-r0tl01kq 929 74 , , , cord-010027-r0tl01kq 929 75 when when WRB cord-010027-r0tl01kq 929 76 an an DT cord-010027-r0tl01kq 929 77 aetiological aetiological JJ cord-010027-r0tl01kq 929 78 factor factor NN cord-010027-r0tl01kq 929 79 appears appear VBZ cord-010027-r0tl01kq 929 80 absent absent JJ cord-010027-r0tl01kq 929 81 and and CC cord-010027-r0tl01kq 929 82 clinical clinical JJ cord-010027-r0tl01kq 929 83 - - HYPH cord-010027-r0tl01kq 929 84 radiological radiological JJ cord-010027-r0tl01kq 929 85 correlation correlation NN cord-010027-r0tl01kq 929 86 is be VBZ cord-010027-r0tl01kq 929 87 non non JJ cord-010027-r0tl01kq 929 88 - - JJ cord-010027-r0tl01kq 929 89 contributory contributory JJ cord-010027-r0tl01kq 929 90 , , , cord-010027-r0tl01kq 929 91 histology histology NN cord-010027-r0tl01kq 929 92 is be VBZ cord-010027-r0tl01kq 929 93 required require VBN cord-010027-r0tl01kq 929 94 . . . cord-010027-r0tl01kq 930 1 The the DT cord-010027-r0tl01kq 930 2 traditional traditional JJ cord-010027-r0tl01kq 930 3 surgical surgical JJ cord-010027-r0tl01kq 930 4 lung lung NN cord-010027-r0tl01kq 930 5 biopsy biopsy NN cord-010027-r0tl01kq 930 6 ( ( -LRB- cord-010027-r0tl01kq 930 7 SLB SLB NNP cord-010027-r0tl01kq 930 8 ) ) -RRB- cord-010027-r0tl01kq 930 9 is be VBZ cord-010027-r0tl01kq 930 10 not not RB cord-010027-r0tl01kq 930 11 without without IN cord-010027-r0tl01kq 930 12 risks risk NNS cord-010027-r0tl01kq 930 13 . . . cord-010027-r0tl01kq 931 1 Cryotechnically Cryotechnically NNP cord-010027-r0tl01kq 931 2 obtained obtain VBD cord-010027-r0tl01kq 931 3 specimens specimen NNS cord-010027-r0tl01kq 931 4 contain contain VBP cord-010027-r0tl01kq 931 5 more more RBR cord-010027-r0tl01kq 931 6 alveolated alveolated JJ cord-010027-r0tl01kq 931 7 lung lung NN cord-010027-r0tl01kq 931 8 tissue tissue NN cord-010027-r0tl01kq 931 9 and and CC cord-010027-r0tl01kq 931 10 less less JJR cord-010027-r0tl01kq 931 11 crush crush NN cord-010027-r0tl01kq 931 12 artefact artefact NN cord-010027-r0tl01kq 931 13 than than IN cord-010027-r0tl01kq 931 14 conventional conventional JJ cord-010027-r0tl01kq 931 15 transbronchial transbronchial JJ cord-010027-r0tl01kq 931 16 biopsies biopsy NNS cord-010027-r0tl01kq 931 17 and and CC cord-010027-r0tl01kq 931 18 may may MD cord-010027-r0tl01kq 931 19 offer offer VB cord-010027-r0tl01kq 931 20 an an DT cord-010027-r0tl01kq 931 21 alternative alternative NN cord-010027-r0tl01kq 931 22 to to IN cord-010027-r0tl01kq 931 23 SLB SLB NNP cord-010027-r0tl01kq 931 24 in in IN cord-010027-r0tl01kq 931 25 selected select VBN cord-010027-r0tl01kq 931 26 cases case NNS cord-010027-r0tl01kq 931 27 . . . cord-010027-r0tl01kq 932 1 We -PRON- PRP cord-010027-r0tl01kq 932 2 aimed aim VBD cord-010027-r0tl01kq 932 3 at at IN cord-010027-r0tl01kq 932 4 studying study VBG cord-010027-r0tl01kq 932 5 the the DT cord-010027-r0tl01kq 932 6 complications complication NNS cord-010027-r0tl01kq 932 7 of of IN cord-010027-r0tl01kq 932 8 cryoprobe cryoprobe NN cord-010027-r0tl01kq 932 9 transbronchial transbronchial JJ cord-010027-r0tl01kq 932 10 lung lung NNP cord-010027-r0tl01kq 932 11 biopsy biopsy NNP cord-010027-r0tl01kq 932 12 ( ( -LRB- cord-010027-r0tl01kq 932 13 CPBx CPBx NNP cord-010027-r0tl01kq 932 14 ) ) -RRB- cord-010027-r0tl01kq 932 15 and and CC cord-010027-r0tl01kq 932 16 the the DT cord-010027-r0tl01kq 932 17 quality quality NN cord-010027-r0tl01kq 932 18 and and CC cord-010027-r0tl01kq 932 19 pathological pathological JJ cord-010027-r0tl01kq 932 20 characteristics characteristic NNS cord-010027-r0tl01kq 932 21 of of IN cord-010027-r0tl01kq 932 22 the the DT cord-010027-r0tl01kq 932 23 tissue tissue NN cord-010027-r0tl01kq 932 24 obtained obtain VBN cord-010027-r0tl01kq 932 25 . . . cord-010027-r0tl01kq 933 1 Methods method NNS cord-010027-r0tl01kq 933 2 : : : cord-010027-r0tl01kq 933 3 This this DT cord-010027-r0tl01kq 933 4 is be VBZ cord-010027-r0tl01kq 933 5 a a DT cord-010027-r0tl01kq 933 6 prospective prospective JJ cord-010027-r0tl01kq 933 7 study study NN cord-010027-r0tl01kq 933 8 of of IN cord-010027-r0tl01kq 933 9 patients patient NNS cord-010027-r0tl01kq 933 10 who who WP cord-010027-r0tl01kq 933 11 were be VBD cord-010027-r0tl01kq 933 12 selected select VBN cord-010027-r0tl01kq 933 13 for for IN cord-010027-r0tl01kq 933 14 CPBx CPBx NNS cord-010027-r0tl01kq 933 15 including include VBG cord-010027-r0tl01kq 933 16 cases case NNS cord-010027-r0tl01kq 933 17 of of IN cord-010027-r0tl01kq 933 18 possible possible JJ cord-010027-r0tl01kq 933 19 / / SYM cord-010027-r0tl01kq 933 20 probable probable JJ cord-010027-r0tl01kq 933 21 idiopathic idiopathic JJ cord-010027-r0tl01kq 933 22 pulmonary pulmonary JJ cord-010027-r0tl01kq 933 23 fibrosis fibrosis NN cord-010027-r0tl01kq 933 24 ( ( -LRB- cord-010027-r0tl01kq 933 25 IPF IPF NNP cord-010027-r0tl01kq 933 26 ) ) -RRB- cord-010027-r0tl01kq 933 27 . . . cord-010027-r0tl01kq 934 1 Complications complication NNS cord-010027-r0tl01kq 934 2 of of IN cord-010027-r0tl01kq 934 3 the the DT cord-010027-r0tl01kq 934 4 procedure procedure NN cord-010027-r0tl01kq 934 5 as as RB cord-010027-r0tl01kq 934 6 well well RB cord-010027-r0tl01kq 934 7 as as IN cord-010027-r0tl01kq 934 8 the the DT cord-010027-r0tl01kq 934 9 quality quality NN cord-010027-r0tl01kq 934 10 and and CC cord-010027-r0tl01kq 934 11 pathological pathological JJ cord-010027-r0tl01kq 934 12 characteristics characteristic NNS cord-010027-r0tl01kq 934 13 of of IN cord-010027-r0tl01kq 934 14 the the DT cord-010027-r0tl01kq 934 15 tissue tissue NN cord-010027-r0tl01kq 934 16 are be VBP cord-010027-r0tl01kq 934 17 studied study VBN cord-010027-r0tl01kq 934 18 . . . cord-010027-r0tl01kq 935 1 Results result NNS cord-010027-r0tl01kq 935 2 : : : cord-010027-r0tl01kq 936 1 Twenty twenty CD cord-010027-r0tl01kq 936 2 - - HYPH cord-010027-r0tl01kq 936 3 seven seven CD cord-010027-r0tl01kq 936 4 procedures procedure NNS cord-010027-r0tl01kq 936 5 were be VBD cord-010027-r0tl01kq 936 6 performed perform VBN cord-010027-r0tl01kq 936 7 in in IN cord-010027-r0tl01kq 936 8 24 24 CD cord-010027-r0tl01kq 936 9 patients patient NNS cord-010027-r0tl01kq 936 10 , , , cord-010027-r0tl01kq 936 11 20 20 CD cord-010027-r0tl01kq 936 12 of of IN cord-010027-r0tl01kq 936 13 which which WDT cord-010027-r0tl01kq 936 14 were be VBD cord-010027-r0tl01kq 936 15 radiologically radiologically RB cord-010027-r0tl01kq 936 16 IPF IPF NNP cord-010027-r0tl01kq 936 17 . . . cord-010027-r0tl01kq 937 1 A a DT cord-010027-r0tl01kq 937 2 total total NN cord-010027-r0tl01kq 937 3 of of IN cord-010027-r0tl01kq 937 4 77 77 CD cord-010027-r0tl01kq 937 5 biopsies biopsy NNS cord-010027-r0tl01kq 937 6 were be VBD cord-010027-r0tl01kq 937 7 obtained obtain VBN cord-010027-r0tl01kq 937 8 ( ( -LRB- cord-010027-r0tl01kq 937 9 Average average JJ cord-010027-r0tl01kq 937 10 2.85 2.85 CD cord-010027-r0tl01kq 937 11 biopsies biopsy NNS cord-010027-r0tl01kq 937 12 per per IN cord-010027-r0tl01kq 937 13 procedure procedure NN cord-010027-r0tl01kq 937 14 ) ) -RRB- cord-010027-r0tl01kq 937 15 . . . cord-010027-r0tl01kq 938 1 Only only RB cord-010027-r0tl01kq 938 2 one one CD cord-010027-r0tl01kq 938 3 was be VBD cord-010027-r0tl01kq 938 4 inadequate inadequate JJ cord-010027-r0tl01kq 938 5 initially initially RB cord-010027-r0tl01kq 938 6 . . . cord-010027-r0tl01kq 939 1 Fibroblast Fibroblast NNP cord-010027-r0tl01kq 939 2 foci foci NN cord-010027-r0tl01kq 939 3 and and CC cord-010027-r0tl01kq 939 4 features feature VBZ cord-010027-r0tl01kq 939 5 consistent consistent JJ cord-010027-r0tl01kq 939 6 with with IN cord-010027-r0tl01kq 940 1 usual usual JJ cord-010027-r0tl01kq 940 2 interstitial interstitial JJ cord-010027-r0tl01kq 940 3 pneumonia pneumonia NN cord-010027-r0tl01kq 940 4 ( ( -LRB- cord-010027-r0tl01kq 940 5 UIP UIP NNP cord-010027-r0tl01kq 940 6 ) ) -RRB- cord-010027-r0tl01kq 940 7 pattern pattern NN cord-010027-r0tl01kq 940 8 were be VBD cord-010027-r0tl01kq 940 9 present present JJ cord-010027-r0tl01kq 940 10 in in IN cord-010027-r0tl01kq 940 11 18 18 CD cord-010027-r0tl01kq 940 12 biopsies biopsy NNS cord-010027-r0tl01kq 940 13 from from IN cord-010027-r0tl01kq 940 14 16 16 CD cord-010027-r0tl01kq 940 15 patients patient NNS cord-010027-r0tl01kq 940 16 ( ( -LRB- cord-010027-r0tl01kq 940 17 66.7 66.7 CD cord-010027-r0tl01kq 940 18 % % NN cord-010027-r0tl01kq 940 19 of of IN cord-010027-r0tl01kq 940 20 total total NN cord-010027-r0tl01kq 940 21 ; ; : cord-010027-r0tl01kq 940 22 80 80 CD cord-010027-r0tl01kq 940 23 % % NN cord-010027-r0tl01kq 940 24 of of IN cord-010027-r0tl01kq 940 25 suspected suspect VBN cord-010027-r0tl01kq 940 26 IPF IPF NNP cord-010027-r0tl01kq 940 27 cases case NNS cord-010027-r0tl01kq 940 28 ) ) -RRB- cord-010027-r0tl01kq 940 29 . . . cord-010027-r0tl01kq 941 1 Granulomas granuloma NNS cord-010027-r0tl01kq 941 2 were be VBD cord-010027-r0tl01kq 941 3 identified identify VBN cord-010027-r0tl01kq 941 4 in in IN cord-010027-r0tl01kq 941 5 4 4 CD cord-010027-r0tl01kq 941 6 patients patient NNS cord-010027-r0tl01kq 941 7 ( ( -LRB- cord-010027-r0tl01kq 941 8 16.7 16.7 CD cord-010027-r0tl01kq 941 9 % % NN cord-010027-r0tl01kq 941 10 ) ) -RRB- cord-010027-r0tl01kq 941 11 , , , cord-010027-r0tl01kq 941 12 3 3 CD cord-010027-r0tl01kq 941 13 of of IN cord-010027-r0tl01kq 941 14 which which WDT cord-010027-r0tl01kq 941 15 were be VBD cord-010027-r0tl01kq 941 16 radiologically radiologically RB cord-010027-r0tl01kq 941 17 suspected suspect VBN cord-010027-r0tl01kq 941 18 IPF IPF NNP cord-010027-r0tl01kq 941 19 ( ( -LRB- cord-010027-r0tl01kq 941 20 15 15 CD cord-010027-r0tl01kq 941 21 % % NN cord-010027-r0tl01kq 941 22 of of IN cord-010027-r0tl01kq 941 23 suspected suspect VBN cord-010027-r0tl01kq 941 24 IPF IPF NNP cord-010027-r0tl01kq 941 25 cases case NNS cord-010027-r0tl01kq 941 26 ) ) -RRB- cord-010027-r0tl01kq 941 27 . . . cord-010027-r0tl01kq 942 1 Two two CD cord-010027-r0tl01kq 942 2 patients patient NNS cord-010027-r0tl01kq 942 3 ( ( -LRB- cord-010027-r0tl01kq 942 4 8.3 8.3 CD cord-010027-r0tl01kq 942 5 % % NN cord-010027-r0tl01kq 942 6 ) ) -RRB- cord-010027-r0tl01kq 942 7 had have VBD cord-010027-r0tl01kq 942 8 organizing organize VBG cord-010027-r0tl01kq 942 9 pneumonia pneumonia NN cord-010027-r0tl01kq 942 10 ; ; : cord-010027-r0tl01kq 942 11 both both DT cord-010027-r0tl01kq 942 12 were be VBD cord-010027-r0tl01kq 942 13 inconsistent inconsistent JJ cord-010027-r0tl01kq 942 14 with with IN cord-010027-r0tl01kq 942 15 IPF IPF NNP cord-010027-r0tl01kq 942 16 radiologically radiologically RB cord-010027-r0tl01kq 942 17 . . . cord-010027-r0tl01kq 943 1 The the DT cord-010027-r0tl01kq 943 2 findings finding NNS cord-010027-r0tl01kq 943 3 in in IN cord-010027-r0tl01kq 943 4 the the DT cord-010027-r0tl01kq 943 5 remaining remain VBG cord-010027-r0tl01kq 943 6 3 3 CD cord-010027-r0tl01kq 943 7 patients patient NNS cord-010027-r0tl01kq 943 8 were be VBD cord-010027-r0tl01kq 943 9 nonspecific nonspecific JJ cord-010027-r0tl01kq 943 10 ; ; : cord-010027-r0tl01kq 943 11 two two CD cord-010027-r0tl01kq 943 12 of of IN cord-010027-r0tl01kq 943 13 these these DT cord-010027-r0tl01kq 943 14 were be VBD cord-010027-r0tl01kq 943 15 radiologically radiologically RB cord-010027-r0tl01kq 943 16 IPF IPF NNP cord-010027-r0tl01kq 943 17 ( ( -LRB- cord-010027-r0tl01kq 943 18 10 10 CD cord-010027-r0tl01kq 943 19 % % NN cord-010027-r0tl01kq 943 20 of of IN cord-010027-r0tl01kq 943 21 IPF IPF NNP cord-010027-r0tl01kq 943 22 cases case NNS cord-010027-r0tl01kq 943 23 ) ) -RRB- cord-010027-r0tl01kq 943 24 . . . cord-010027-r0tl01kq 944 1 Seven seven CD cord-010027-r0tl01kq 944 2 patients patient NNS cord-010027-r0tl01kq 944 3 ( ( -LRB- cord-010027-r0tl01kq 944 4 25.9 25.9 CD cord-010027-r0tl01kq 944 5 % % NN cord-010027-r0tl01kq 944 6 of of IN cord-010027-r0tl01kq 944 7 procedures procedure NNS cord-010027-r0tl01kq 944 8 ) ) -RRB- cord-010027-r0tl01kq 944 9 developed develop VBD cord-010027-r0tl01kq 944 10 pneumothorax pneumothorax NN cord-010027-r0tl01kq 944 11 , , , cord-010027-r0tl01kq 944 12 only only RB cord-010027-r0tl01kq 944 13 2 2 CD cord-010027-r0tl01kq 944 14 of of IN cord-010027-r0tl01kq 944 15 them -PRON- PRP cord-010027-r0tl01kq 944 16 ( ( -LRB- cord-010027-r0tl01kq 944 17 7.4 7.4 CD cord-010027-r0tl01kq 944 18 % % NN cord-010027-r0tl01kq 944 19 ) ) -RRB- cord-010027-r0tl01kq 944 20 required require VBN cord-010027-r0tl01kq 944 21 chest chest NN cord-010027-r0tl01kq 944 22 tube tube NN cord-010027-r0tl01kq 944 23 drainage drainage NN cord-010027-r0tl01kq 944 24 . . . cord-010027-r0tl01kq 945 1 Five five CD cord-010027-r0tl01kq 945 2 patients patient NNS cord-010027-r0tl01kq 945 3 ( ( -LRB- cord-010027-r0tl01kq 945 4 18.5 18.5 CD cord-010027-r0tl01kq 945 5 % % NN cord-010027-r0tl01kq 945 6 ) ) -RRB- cord-010027-r0tl01kq 945 7 developed developed JJ cord-010027-r0tl01kq 945 8 bleeding bleeding NN cord-010027-r0tl01kq 945 9 ( ( -LRB- cord-010027-r0tl01kq 945 10 moderate moderate JJ cord-010027-r0tl01kq 945 11 in in IN cord-010027-r0tl01kq 945 12 3 3 CD cord-010027-r0tl01kq 945 13 ( ( -LRB- cord-010027-r0tl01kq 945 14 11.1 11.1 CD cord-010027-r0tl01kq 945 15 % % NN cord-010027-r0tl01kq 945 16 ) ) -RRB- cord-010027-r0tl01kq 945 17 and and CC cord-010027-r0tl01kq 945 18 mild mild JJ cord-010027-r0tl01kq 945 19 in in IN cord-010027-r0tl01kq 945 20 2 2 CD cord-010027-r0tl01kq 945 21 ( ( -LRB- cord-010027-r0tl01kq 945 22 7.4 7.4 CD cord-010027-r0tl01kq 945 23 % % NN cord-010027-r0tl01kq 945 24 ) ) -RRB- cord-010027-r0tl01kq 945 25 ) ) -RRB- cord-010027-r0tl01kq 945 26 . . . cord-010027-r0tl01kq 946 1 Conclusion conclusion NN cord-010027-r0tl01kq 946 2 : : : cord-010027-r0tl01kq 946 3 CPBx CPBx NNP cord-010027-r0tl01kq 946 4 was be VBD cord-010027-r0tl01kq 946 5 useful useful JJ cord-010027-r0tl01kq 946 6 in in IN cord-010027-r0tl01kq 946 7 this this DT cord-010027-r0tl01kq 946 8 cohort cohort NN cord-010027-r0tl01kq 946 9 at at IN cord-010027-r0tl01kq 946 10 potentially potentially RB cord-010027-r0tl01kq 946 11 identifying identify VBG cord-010027-r0tl01kq 946 12 features feature NNS cord-010027-r0tl01kq 946 13 not not RB cord-010027-r0tl01kq 946 14 typical typical JJ cord-010027-r0tl01kq 946 15 of of IN cord-010027-r0tl01kq 946 16 IPF IPF NNP cord-010027-r0tl01kq 946 17 and and CC cord-010027-r0tl01kq 946 18 displayed display VBD cord-010027-r0tl01kq 946 19 an an DT cord-010027-r0tl01kq 946 20 acceptable acceptable JJ cord-010027-r0tl01kq 946 21 complication complication NN cord-010027-r0tl01kq 946 22 rate rate NN cord-010027-r0tl01kq 946 23 . . . cord-010027-r0tl01kq 947 1 Cardiomyopathy Cardiomyopathy NNP cord-010027-r0tl01kq 947 2 ZJ ZJ NNP cord-010027-r0tl01kq 947 3 van van NNP cord-010027-r0tl01kq 947 4 der der NNP cord-010027-r0tl01kq 947 5 Klooster Klooster NNP cord-010027-r0tl01kq 947 6 1 1 CD cord-010027-r0tl01kq 947 7 ; ; : cord-010027-r0tl01kq 947 8 S S NNP cord-010027-r0tl01kq 947 9 Sepehrkhouy Sepehrkhouy NNP cord-010027-r0tl01kq 947 10 1 1 CD cord-010027-r0tl01kq 947 11 ; ; : cord-010027-r0tl01kq 947 12 M M NNP cord-010027-r0tl01kq 947 13 Harakalova Harakalova NNP cord-010027-r0tl01kq 947 14 1 1 CD cord-010027-r0tl01kq 947 15 ; ; : cord-010027-r0tl01kq 947 16 R R NNP cord-010027-r0tl01kq 947 17 Goldschmeding Goldschmeding NNP cord-010027-r0tl01kq 947 18 1 1 CD cord-010027-r0tl01kq 947 19 ; ; : cord-010027-r0tl01kq 948 1 N N NNP cord-010027-r0tl01kq 948 2 de de NNP cord-010027-r0tl01kq 948 3 Jonge Jonge NNP cord-010027-r0tl01kq 948 4 1 1 CD cord-010027-r0tl01kq 948 5 ; ; : cord-010027-r0tl01kq 948 6 AJH AJH NNP cord-010027-r0tl01kq 948 7 Suurmeijer Suurmeijer NNP cord-010027-r0tl01kq 948 8 2 2 CD cord-010027-r0tl01kq 948 9 ; ; : cord-010027-r0tl01kq 948 10 RA RA NNP cord-010027-r0tl01kq 948 11 de de NNP cord-010027-r0tl01kq 948 12 Weger Weger NNP cord-010027-r0tl01kq 948 13 1 1 CD cord-010027-r0tl01kq 948 14 ; ; : cord-010027-r0tl01kq 948 15 F F NNP cord-010027-r0tl01kq 948 16 Asselbergs Asselbergs NNP cord-010027-r0tl01kq 948 17 1 1 CD cord-010027-r0tl01kq 948 18 ; ; : cord-010027-r0tl01kq 949 1 P p NN cord-010027-r0tl01kq 949 2 A a NN cord-010027-r0tl01kq 950 1 Vink Vink NNP cord-010027-r0tl01kq 950 2 1 1 CD cord-010027-r0tl01kq 950 3 Introduction introduction NN cord-010027-r0tl01kq 950 4 : : : cord-010027-r0tl01kq 951 1 Genetic genetic JJ cord-010027-r0tl01kq 951 2 dilated dilated JJ cord-010027-r0tl01kq 951 3 cardiomyopathy cardiomyopathy NN cord-010027-r0tl01kq 951 4 is be VBZ cord-010027-r0tl01kq 951 5 a a DT cord-010027-r0tl01kq 951 6 heterogenous heterogenous JJ cord-010027-r0tl01kq 951 7 group group NN cord-010027-r0tl01kq 951 8 of of IN cord-010027-r0tl01kq 951 9 diseases disease NNS cord-010027-r0tl01kq 951 10 caused cause VBN cord-010027-r0tl01kq 951 11 by by IN cord-010027-r0tl01kq 951 12 mutations mutation NNS cord-010027-r0tl01kq 951 13 in in IN cord-010027-r0tl01kq 951 14 various various JJ cord-010027-r0tl01kq 951 15 genes gene NNS cord-010027-r0tl01kq 951 16 . . . cord-010027-r0tl01kq 952 1 Several several JJ cord-010027-r0tl01kq 952 2 types type NNS cord-010027-r0tl01kq 952 3 of of IN cord-010027-r0tl01kq 952 4 cardiomyocyte cardiomyocyte NNP cord-010027-r0tl01kq 952 5 cell cell NN cord-010027-r0tl01kq 952 6 death death NN cord-010027-r0tl01kq 952 7 have have VBP cord-010027-r0tl01kq 952 8 been be VBN cord-010027-r0tl01kq 952 9 implicated implicate VBN cord-010027-r0tl01kq 952 10 in in IN cord-010027-r0tl01kq 952 11 dilated dilated JJ cord-010027-r0tl01kq 952 12 cardiomyopathy cardiomyopathy NN cord-010027-r0tl01kq 952 13 : : : cord-010027-r0tl01kq 952 14 ( ( -LRB- cord-010027-r0tl01kq 952 15 macro)autophagy macro)autophagy NNP cord-010027-r0tl01kq 952 16 - - HYPH cord-010027-r0tl01kq 952 17 related relate VBN cord-010027-r0tl01kq 952 18 cell cell NN cord-010027-r0tl01kq 952 19 death death NN cord-010027-r0tl01kq 952 20 , , , cord-010027-r0tl01kq 952 21 apoptosis apoptosis NN cord-010027-r0tl01kq 952 22 , , , cord-010027-r0tl01kq 952 23 necroptosis necroptosis NNP cord-010027-r0tl01kq 952 24 and and CC cord-010027-r0tl01kq 952 25 oncosis oncosis NNP cord-010027-r0tl01kq 952 26 . . . cord-010027-r0tl01kq 953 1 One one CD cord-010027-r0tl01kq 953 2 plausible plausible JJ cord-010027-r0tl01kq 953 3 mechanism mechanism NN cord-010027-r0tl01kq 953 4 of of IN cord-010027-r0tl01kq 953 5 genetic genetic JJ cord-010027-r0tl01kq 953 6 cardiomyopathy cardiomyopathy NN cord-010027-r0tl01kq 953 7 is be VBZ cord-010027-r0tl01kq 953 8 proteotoxicity proteotoxicity NN cord-010027-r0tl01kq 953 9 of of IN cord-010027-r0tl01kq 953 10 accumulated accumulate VBN cord-010027-r0tl01kq 953 11 protein protein NN cord-010027-r0tl01kq 953 12 aggregates aggregate NNS cord-010027-r0tl01kq 953 13 . . . cord-010027-r0tl01kq 954 1 We -PRON- PRP cord-010027-r0tl01kq 954 2 investigated investigate VBD cord-010027-r0tl01kq 954 3 the the DT cord-010027-r0tl01kq 954 4 association association NN cord-010027-r0tl01kq 954 5 of of IN cord-010027-r0tl01kq 954 6 such such JJ cord-010027-r0tl01kq 954 7 aggregates aggregate NNS cord-010027-r0tl01kq 954 8 as as IN cord-010027-r0tl01kq 954 9 sign sign NN cord-010027-r0tl01kq 954 10 of of IN cord-010027-r0tl01kq 954 11 autophagy autophagy NN cord-010027-r0tl01kq 954 12 - - HYPH cord-010027-r0tl01kq 954 13 related relate VBN cord-010027-r0tl01kq 954 14 cardiomyocyte cardiomyocyte NNP cord-010027-r0tl01kq 954 15 cell cell NN cord-010027-r0tl01kq 954 16 death death NN cord-010027-r0tl01kq 954 17 with with IN cord-010027-r0tl01kq 954 18 specific specific JJ cord-010027-r0tl01kq 954 19 pathogenic pathogenic JJ cord-010027-r0tl01kq 954 20 mutations mutation NNS cord-010027-r0tl01kq 954 21 . . . cord-010027-r0tl01kq 955 1 Methods method NNS cord-010027-r0tl01kq 955 2 : : : cord-010027-r0tl01kq 955 3 Hearts heart NNS cord-010027-r0tl01kq 955 4 from from IN cord-010027-r0tl01kq 955 5 30 30 CD cord-010027-r0tl01kq 955 6 patients patient NNS cord-010027-r0tl01kq 955 7 with with IN cord-010027-r0tl01kq 955 8 a a DT cord-010027-r0tl01kq 955 9 genetic genetic JJ cord-010027-r0tl01kq 955 10 dilated dilated JJ cord-010027-r0tl01kq 955 11 cardiomyopathy cardiomyopathy NN cord-010027-r0tl01kq 955 12 or or CC cord-010027-r0tl01kq 955 13 a a DT cord-010027-r0tl01kq 955 14 combined combined JJ cord-010027-r0tl01kq 955 15 phenotype phenotype NN cord-010027-r0tl01kq 955 16 of of IN cord-010027-r0tl01kq 955 17 dilated dilated JJ cord-010027-r0tl01kq 955 18 and and CC cord-010027-r0tl01kq 955 19 arrhythmogenic arrhythmogenic JJ cord-010027-r0tl01kq 955 20 cardiomyopathy cardiomyopathy NN cord-010027-r0tl01kq 955 21 were be VBD cord-010027-r0tl01kq 955 22 included include VBN cord-010027-r0tl01kq 955 23 . . . cord-010027-r0tl01kq 956 1 Microscopic microscopic JJ cord-010027-r0tl01kq 956 2 slices slice NNS cord-010027-r0tl01kq 956 3 from from IN cord-010027-r0tl01kq 956 4 8 8 CD cord-010027-r0tl01kq 956 5 regions region NNS cord-010027-r0tl01kq 956 6 were be VBD cord-010027-r0tl01kq 956 7 immunohistochemically immunohistochemically RB cord-010027-r0tl01kq 956 8 stained stain VBN cord-010027-r0tl01kq 956 9 for for IN cord-010027-r0tl01kq 956 10 P62 P62 NNP cord-010027-r0tl01kq 956 11 , , , cord-010027-r0tl01kq 956 12 a a DT cord-010027-r0tl01kq 956 13 marker marker NN cord-010027-r0tl01kq 956 14 for for IN cord-010027-r0tl01kq 956 15 aggregated aggregated JJ cord-010027-r0tl01kq 956 16 proteins protein NNS cord-010027-r0tl01kq 956 17 destined destine VBN cord-010027-r0tl01kq 956 18 for for IN cord-010027-r0tl01kq 956 19 autophagy autophagy NN cord-010027-r0tl01kq 956 20 . . . cord-010027-r0tl01kq 957 1 Results result NNS cord-010027-r0tl01kq 957 2 : : : cord-010027-r0tl01kq 958 1 Sporadic sporadic JJ cord-010027-r0tl01kq 958 2 P62 P62 NNP cord-010027-r0tl01kq 958 3 positive positive JJ cord-010027-r0tl01kq 958 4 cells cell NNS cord-010027-r0tl01kq 958 5 were be VBD cord-010027-r0tl01kq 958 6 seen see VBN cord-010027-r0tl01kq 958 7 in in IN cord-010027-r0tl01kq 958 8 control control NN cord-010027-r0tl01kq 958 9 hearts heart NNS cord-010027-r0tl01kq 958 10 ( ( -LRB- cord-010027-r0tl01kq 958 11 0.5 0.5 CD cord-010027-r0tl01kq 958 12 % % NN cord-010027-r0tl01kq 958 13 of of IN cord-010027-r0tl01kq 958 14 cardiomyocytes cardiomyocyte NNS cord-010027-r0tl01kq 958 15 , , , cord-010027-r0tl01kq 958 16 range range VBP cord-010027-r0tl01kq 958 17 0.1 0.1 CD cord-010027-r0tl01kq 958 18 - - HYPH cord-010027-r0tl01kq 958 19 0.8 0.8 CD cord-010027-r0tl01kq 958 20 % % NN cord-010027-r0tl01kq 958 21 ) ) -RRB- cord-010027-r0tl01kq 958 22 . . . cord-010027-r0tl01kq 959 1 Troponin troponin JJ cord-010027-r0tl01kq 959 2 mutations mutation NNS cord-010027-r0tl01kq 959 3 ( ( -LRB- cord-010027-r0tl01kq 959 4 TNNT2 TNNT2 NNP cord-010027-r0tl01kq 959 5 and and CC cord-010027-r0tl01kq 959 6 TNNI3 TNNI3 NNP cord-010027-r0tl01kq 959 7 ; ; : cord-010027-r0tl01kq 959 8 0.7 0.7 CD cord-010027-r0tl01kq 959 9 % % NN cord-010027-r0tl01kq 959 10 , , , cord-010027-r0tl01kq 959 11 range range VBP cord-010027-r0tl01kq 959 12 0.2 0.2 CD cord-010027-r0tl01kq 959 13 - - SYM cord-010027-r0tl01kq 959 14 1.2 1.2 CD cord-010027-r0tl01kq 959 15 % % NN cord-010027-r0tl01kq 959 16 , , , cord-010027-r0tl01kq 959 17 n=3 n=3 NN cord-010027-r0tl01kq 959 18 ) ) -RRB- cord-010027-r0tl01kq 959 19 showed show VBD cord-010027-r0tl01kq 959 20 hardly hardly RB cord-010027-r0tl01kq 959 21 any any DT cord-010027-r0tl01kq 959 22 increase increase NN cord-010027-r0tl01kq 959 23 in in IN cord-010027-r0tl01kq 959 24 P62 P62 NNP cord-010027-r0tl01kq 959 25 . . . cord-010027-r0tl01kq 960 1 Titin Titin NNP cord-010027-r0tl01kq 960 2 ( ( -LRB- cord-010027-r0tl01kq 960 3 1.6 1.6 CD cord-010027-r0tl01kq 960 4 % % NN cord-010027-r0tl01kq 960 5 , , , cord-010027-r0tl01kq 960 6 range range VBP cord-010027-r0tl01kq 960 7 0.7 0.7 CD cord-010027-r0tl01kq 960 8 - - HYPH cord-010027-r0tl01kq 960 9 2.7 2.7 CD cord-010027-r0tl01kq 960 10 % % NN cord-010027-r0tl01kq 960 11 , , , cord-010027-r0tl01kq 960 12 n=5 n=5 JJ cord-010027-r0tl01kq 960 13 ) ) -RRB- cord-010027-r0tl01kq 960 14 and and CC cord-010027-r0tl01kq 961 1 lamin lamin NNP cord-010027-r0tl01kq 961 2 A A NNP cord-010027-r0tl01kq 961 3 / / SYM cord-010027-r0tl01kq 961 4 C C NNP cord-010027-r0tl01kq 961 5 ( ( -LRB- cord-010027-r0tl01kq 961 6 1.7 1.7 CD cord-010027-r0tl01kq 961 7 % % NN cord-010027-r0tl01kq 961 8 , , , cord-010027-r0tl01kq 961 9 range range VBP cord-010027-r0tl01kq 961 10 1.1 1.1 CD cord-010027-r0tl01kq 961 11 - - SYM cord-010027-r0tl01kq 961 12 2.5 2.5 CD cord-010027-r0tl01kq 961 13 % % NN cord-010027-r0tl01kq 961 14 , , , cord-010027-r0tl01kq 961 15 n=5 n=5 JJ cord-010027-r0tl01kq 961 16 ) ) -RRB- cord-010027-r0tl01kq 961 17 mutations mutation NNS cord-010027-r0tl01kq 961 18 showed show VBD cord-010027-r0tl01kq 961 19 a a DT cord-010027-r0tl01kq 961 20 threefold threefold JJ cord-010027-r0tl01kq 961 21 increase increase NN cord-010027-r0tl01kq 961 22 in in IN cord-010027-r0tl01kq 961 23 P62 P62 NNP cord-010027-r0tl01kq 961 24 staining staining NN cord-010027-r0tl01kq 961 25 . . . cord-010027-r0tl01kq 962 1 A a DT cord-010027-r0tl01kq 962 2 tenfold tenfold RB cord-010027-r0tl01kq 962 3 positive positive JJ cord-010027-r0tl01kq 962 4 staining staining NN cord-010027-r0tl01kq 962 5 was be VBD cord-010027-r0tl01kq 962 6 found find VBN cord-010027-r0tl01kq 962 7 in in IN cord-010027-r0tl01kq 962 8 desmosomal desmosomal JJ cord-010027-r0tl01kq 962 9 mutations mutation NNS cord-010027-r0tl01kq 962 10 ( ( -LRB- cord-010027-r0tl01kq 962 11 PKP2 PKP2 NNP cord-010027-r0tl01kq 962 12 and and CC cord-010027-r0tl01kq 962 13 DSP DSP NNP cord-010027-r0tl01kq 962 14 ; ; : cord-010027-r0tl01kq 962 15 3.8 3.8 CD cord-010027-r0tl01kq 962 16 % % NN cord-010027-r0tl01kq 962 17 , , , cord-010027-r0tl01kq 962 18 range range VBP cord-010027-r0tl01kq 962 19 3.7 3.7 CD cord-010027-r0tl01kq 962 20 - - SYM cord-010027-r0tl01kq 962 21 4.0 4.0 CD cord-010027-r0tl01kq 962 22 % % NN cord-010027-r0tl01kq 962 23 , , , cord-010027-r0tl01kq 962 24 n=3 n=3 NN cord-010027-r0tl01kq 962 25 ) ) -RRB- cord-010027-r0tl01kq 962 26 and and CC cord-010027-r0tl01kq 962 27 myosin myosin NN cord-010027-r0tl01kq 962 28 mutations mutation NNS cord-010027-r0tl01kq 962 29 ( ( -LRB- cord-010027-r0tl01kq 962 30 MYH7 MYH7 NNP cord-010027-r0tl01kq 962 31 and and CC cord-010027-r0tl01kq 962 32 MYBPC3 mybpc3 NN cord-010027-r0tl01kq 962 33 ; ; : cord-010027-r0tl01kq 962 34 4,6 4,6 CD cord-010027-r0tl01kq 962 35 % % NN cord-010027-r0tl01kq 962 36 range range NN cord-010027-r0tl01kq 962 37 3.3 3.3 CD cord-010027-r0tl01kq 962 38 - - SYM cord-010027-r0tl01kq 962 39 5.7 5.7 CD cord-010027-r0tl01kq 962 40 % % NN cord-010027-r0tl01kq 962 41 , , , cord-010027-r0tl01kq 962 42 n=3 n=3 NN cord-010027-r0tl01kq 962 43 ) ) -RRB- cord-010027-r0tl01kq 962 44 . . . cord-010027-r0tl01kq 963 1 Phospholamban Phospholamban NNP cord-010027-r0tl01kq 963 2 mutations mutation NNS cord-010027-r0tl01kq 963 3 ( ( -LRB- cord-010027-r0tl01kq 963 4 8.8 8.8 CD cord-010027-r0tl01kq 963 5 % % NN cord-010027-r0tl01kq 963 6 , , , cord-010027-r0tl01kq 963 7 range range VBP cord-010027-r0tl01kq 963 8 4.1 4.1 CD cord-010027-r0tl01kq 963 9 - - SYM cord-010027-r0tl01kq 963 10 16 16 CD cord-010027-r0tl01kq 963 11 % % NN cord-010027-r0tl01kq 963 12 , , , cord-010027-r0tl01kq 963 13 n=8 n=8 NN cord-010027-r0tl01kq 963 14 ) ) -RRB- cord-010027-r0tl01kq 963 15 and and CC cord-010027-r0tl01kq 963 16 desminopathies desminopathie NNS cord-010027-r0tl01kq 963 17 ( ( -LRB- cord-010027-r0tl01kq 963 18 desmin desmin NNP cord-010027-r0tl01kq 963 19 and and CC cord-010027-r0tl01kq 963 20 Alpha Alpha NNP cord-010027-r0tl01kq 963 21 - - HYPH cord-010027-r0tl01kq 963 22 B b NN cord-010027-r0tl01kq 963 23 crystallin crystallin NNP cord-010027-r0tl01kq 963 24 ; ; : cord-010027-r0tl01kq 963 25 17 17 CD cord-010027-r0tl01kq 963 26 % % NN cord-010027-r0tl01kq 963 27 of of IN cord-010027-r0tl01kq 963 28 cardiomyocytes cardiomyocyte NNS cord-010027-r0tl01kq 963 29 , , , cord-010027-r0tl01kq 963 30 range range VBP cord-010027-r0tl01kq 963 31 4.0 4.0 CD cord-010027-r0tl01kq 963 32 - - SYM cord-010027-r0tl01kq 963 33 31 31 CD cord-010027-r0tl01kq 963 34 % % NN cord-010027-r0tl01kq 963 35 , , , cord-010027-r0tl01kq 963 36 n=3 n=3 NN cord-010027-r0tl01kq 963 37 ) ) -RRB- cord-010027-r0tl01kq 963 38 showed show VBD cord-010027-r0tl01kq 963 39 the the DT cord-010027-r0tl01kq 963 40 highest high JJS cord-010027-r0tl01kq 963 41 number number NN cord-010027-r0tl01kq 963 42 of of IN cord-010027-r0tl01kq 963 43 P62 P62 NNP cord-010027-r0tl01kq 963 44 positive positive JJ cord-010027-r0tl01kq 963 45 cells cell NNS cord-010027-r0tl01kq 963 46 . . . cord-010027-r0tl01kq 964 1 Conclusion conclusion NN cord-010027-r0tl01kq 964 2 : : : cord-010027-r0tl01kq 965 1 Accumulation accumulation NN cord-010027-r0tl01kq 965 2 of of IN cord-010027-r0tl01kq 965 3 P62 P62 NNP cord-010027-r0tl01kq 965 4 positive positive JJ cord-010027-r0tl01kq 965 5 protein protein NN cord-010027-r0tl01kq 965 6 aggregates aggregate NNS cord-010027-r0tl01kq 965 7 is be VBZ cord-010027-r0tl01kq 965 8 associated associate VBN cord-010027-r0tl01kq 965 9 with with IN cord-010027-r0tl01kq 965 10 the the DT cord-010027-r0tl01kq 965 11 type type NN cord-010027-r0tl01kq 965 12 of of IN cord-010027-r0tl01kq 965 13 mutation mutation NN cord-010027-r0tl01kq 965 14 underlying underlie VBG cord-010027-r0tl01kq 965 15 the the DT cord-010027-r0tl01kq 965 16 dilated dilated JJ cord-010027-r0tl01kq 965 17 cardiomyopathy cardiomyopathy NN cord-010027-r0tl01kq 965 18 . . . cord-010027-r0tl01kq 966 1 Titin Titin NNP cord-010027-r0tl01kq 966 2 , , , cord-010027-r0tl01kq 966 3 lamin lamin NN cord-010027-r0tl01kq 966 4 A A NNP cord-010027-r0tl01kq 966 5 / / SYM cord-010027-r0tl01kq 966 6 C c NN cord-010027-r0tl01kq 966 7 and and CC cord-010027-r0tl01kq 966 8 troponin troponin JJ cord-010027-r0tl01kq 966 9 mutations mutation NNS cord-010027-r0tl01kq 966 10 revealed reveal VBD cord-010027-r0tl01kq 966 11 little little JJ cord-010027-r0tl01kq 966 12 protein protein NN cord-010027-r0tl01kq 966 13 aggregation aggregation NN cord-010027-r0tl01kq 966 14 , , , cord-010027-r0tl01kq 966 15 whereas whereas IN cord-010027-r0tl01kq 966 16 desminopathies desminopathie NNS cord-010027-r0tl01kq 966 17 , , , cord-010027-r0tl01kq 966 18 phospholamban phospholamban NNP cord-010027-r0tl01kq 966 19 , , , cord-010027-r0tl01kq 966 20 desmosomal desmosomal NNP cord-010027-r0tl01kq 966 21 and and CC cord-010027-r0tl01kq 966 22 myosin myosin NNS cord-010027-r0tl01kq 966 23 mutations mutation NNS cord-010027-r0tl01kq 966 24 show show VBP cord-010027-r0tl01kq 966 25 abundant abundant JJ cord-010027-r0tl01kq 966 26 aggregates aggregate NNS cord-010027-r0tl01kq 966 27 . . . cord-010027-r0tl01kq 967 1 This this DT cord-010027-r0tl01kq 967 2 suggests suggest VBZ cord-010027-r0tl01kq 967 3 that that IN cord-010027-r0tl01kq 967 4 the the DT cord-010027-r0tl01kq 967 5 type type NN cord-010027-r0tl01kq 967 6 of of IN cord-010027-r0tl01kq 967 7 mutation mutation NN cord-010027-r0tl01kq 967 8 plays play VBZ cord-010027-r0tl01kq 967 9 an an DT cord-010027-r0tl01kq 967 10 important important JJ cord-010027-r0tl01kq 967 11 role role NN cord-010027-r0tl01kq 967 12 in in IN cord-010027-r0tl01kq 967 13 determining determine VBG cord-010027-r0tl01kq 967 14 distinct distinct JJ cord-010027-r0tl01kq 967 15 mechanisms mechanism NNS cord-010027-r0tl01kq 967 16 of of IN cord-010027-r0tl01kq 967 17 cardiomyocyte cardiomyocyte NNP cord-010027-r0tl01kq 967 18 cell cell NN cord-010027-r0tl01kq 967 19 death death NN cord-010027-r0tl01kq 967 20 . . . cord-010027-r0tl01kq 968 1 Major Major NNP cord-010027-r0tl01kq 968 2 Trauma Trauma NNP cord-010027-r0tl01kq 968 3 Centre Centre NNP cord-010027-r0tl01kq 968 4 Status Status NNP cord-010027-r0tl01kq 968 5 and and CC cord-010027-r0tl01kq 968 6 its -PRON- PRP$ cord-010027-r0tl01kq 968 7 Impact Impact NNP cord-010027-r0tl01kq 968 8 on on IN cord-010027-r0tl01kq 968 9 the the DT cord-010027-r0tl01kq 968 10 Department Department NNP cord-010027-r0tl01kq 968 11 of of IN cord-010027-r0tl01kq 968 12 Cellular Cellular NNP cord-010027-r0tl01kq 968 13 and and CC cord-010027-r0tl01kq 968 14 Anatomical Anatomical NNP cord-010027-r0tl01kq 968 15 Pathology Pathology NNP cord-010027-r0tl01kq 968 16 in in IN cord-010027-r0tl01kq 968 17 a a DT cord-010027-r0tl01kq 968 18 large large JJ cord-010027-r0tl01kq 968 19 Tertiary Tertiary NNP cord-010027-r0tl01kq 968 20 Referral Referral NNP cord-010027-r0tl01kq 968 21 Centre Centre NNP cord-010027-r0tl01kq 968 22 P P NNP cord-010027-r0tl01kq 968 23 RA RA NNP cord-010027-r0tl01kq 968 24 Hadden Hadden NNP cord-010027-r0tl01kq 968 25 Background Background NNP cord-010027-r0tl01kq 968 26 : : : cord-010027-r0tl01kq 968 27 Major Major NNP cord-010027-r0tl01kq 968 28 Trauma Trauma NNP cord-010027-r0tl01kq 968 29 has have VBZ cord-010027-r0tl01kq 968 30 been be VBN cord-010027-r0tl01kq 968 31 centralised centralise VBN cord-010027-r0tl01kq 968 32 into into IN cord-010027-r0tl01kq 968 33 Major Major NNP cord-010027-r0tl01kq 968 34 Trauma Trauma NNP cord-010027-r0tl01kq 968 35 Centres Centres NNPS cord-010027-r0tl01kq 968 36 which which WDT cord-010027-r0tl01kq 968 37 act act VBP cord-010027-r0tl01kq 968 38 as as IN cord-010027-r0tl01kq 968 39 the the DT cord-010027-r0tl01kq 968 40 focus focus NN cord-010027-r0tl01kq 968 41 of of IN cord-010027-r0tl01kq 968 42 Major Major NNP cord-010027-r0tl01kq 968 43 Trauma Trauma NNP cord-010027-r0tl01kq 968 44 Networks Networks NNPS cord-010027-r0tl01kq 968 45 . . . cord-010027-r0tl01kq 969 1 In in IN cord-010027-r0tl01kq 969 2 April April NNP cord-010027-r0tl01kq 969 3 2012 2012 CD cord-010027-r0tl01kq 969 4 , , , cord-010027-r0tl01kq 969 5 Derriford Derriford NNP cord-010027-r0tl01kq 969 6 Hospital Hospital NNP cord-010027-r0tl01kq 969 7 in in IN cord-010027-r0tl01kq 969 8 Plymouth Plymouth NNP cord-010027-r0tl01kq 969 9 , , , cord-010027-r0tl01kq 969 10 Devon Devon NNP cord-010027-r0tl01kq 969 11 became become VBD cord-010027-r0tl01kq 969 12 operational operational JJ cord-010027-r0tl01kq 969 13 as as IN cord-010027-r0tl01kq 969 14 the the DT cord-010027-r0tl01kq 969 15 regional regional JJ cord-010027-r0tl01kq 969 16 Major Major NNP cord-010027-r0tl01kq 969 17 Trauma Trauma NNP cord-010027-r0tl01kq 969 18 Centre Centre NNP cord-010027-r0tl01kq 969 19 for for IN cord-010027-r0tl01kq 969 20 the the DT cord-010027-r0tl01kq 969 21 South South NNP cord-010027-r0tl01kq 969 22 West West NNP cord-010027-r0tl01kq 969 23 Peninsula Peninsula NNP cord-010027-r0tl01kq 969 24 . . . cord-010027-r0tl01kq 970 1 As as IN cord-010027-r0tl01kq 970 2 a a DT cord-010027-r0tl01kq 970 3 result result NN cord-010027-r0tl01kq 970 4 , , , cord-010027-r0tl01kq 970 5 there there EX cord-010027-r0tl01kq 970 6 was be VBD cord-010027-r0tl01kq 970 7 potential potential JJ cord-010027-r0tl01kq 970 8 for for IN cord-010027-r0tl01kq 970 9 an an DT cord-010027-r0tl01kq 970 10 increased increase VBN cord-010027-r0tl01kq 970 11 number number NN cord-010027-r0tl01kq 970 12 of of IN cord-010027-r0tl01kq 970 13 trauma trauma NN cord-010027-r0tl01kq 970 14 - - HYPH cord-010027-r0tl01kq 970 15 related relate VBN cord-010027-r0tl01kq 970 16 deaths death NNS cord-010027-r0tl01kq 970 17 to to TO cord-010027-r0tl01kq 970 18 be be VB cord-010027-r0tl01kq 970 19 referred refer VBN cord-010027-r0tl01kq 970 20 to to IN cord-010027-r0tl01kq 970 21 the the DT cord-010027-r0tl01kq 970 22 local local JJ cord-010027-r0tl01kq 970 23 coroner coroner NN cord-010027-r0tl01kq 970 24 , , , cord-010027-r0tl01kq 970 25 as as RB cord-010027-r0tl01kq 970 26 well well RB cord-010027-r0tl01kq 970 27 as as IN cord-010027-r0tl01kq 970 28 surgical surgical JJ cord-010027-r0tl01kq 970 29 specimens specimen NNS cord-010027-r0tl01kq 970 30 , , , cord-010027-r0tl01kq 970 31 potentially potentially RB cord-010027-r0tl01kq 970 32 increasing increase VBG cord-010027-r0tl01kq 970 33 the the DT cord-010027-r0tl01kq 970 34 work work NN cord-010027-r0tl01kq 970 35 load load NN cord-010027-r0tl01kq 970 36 on on IN cord-010027-r0tl01kq 970 37 pathologists pathologist NNS cord-010027-r0tl01kq 970 38 . . . cord-010027-r0tl01kq 971 1 The the DT cord-010027-r0tl01kq 971 2 case case NN cord-010027-r0tl01kq 971 3 mix mix NN cord-010027-r0tl01kq 971 4 could could MD cord-010027-r0tl01kq 971 5 include include VB cord-010027-r0tl01kq 971 6 post post JJ cord-010027-r0tl01kq 971 7 - - JJ cord-010027-r0tl01kq 971 8 operative operative JJ cord-010027-r0tl01kq 971 9 cases case NNS cord-010027-r0tl01kq 971 10 , , , cord-010027-r0tl01kq 971 11 neurosurgical neurosurgical JJ cord-010027-r0tl01kq 971 12 cases case NNS cord-010027-r0tl01kq 971 13 , , , cord-010027-r0tl01kq 971 14 polytrauma polytrauma NN cord-010027-r0tl01kq 971 15 cases case NNS cord-010027-r0tl01kq 971 16 and and CC cord-010027-r0tl01kq 971 17 forensic forensic JJ cord-010027-r0tl01kq 971 18 cases case NNS cord-010027-r0tl01kq 971 19 . . . cord-010027-r0tl01kq 972 1 Methods method NNS cord-010027-r0tl01kq 972 2 : : : cord-010027-r0tl01kq 973 1 On on IN cord-010027-r0tl01kq 973 2 admission admission NN cord-010027-r0tl01kq 973 3 , , , cord-010027-r0tl01kq 973 4 all all DT cord-010027-r0tl01kq 973 5 eligible eligible JJ cord-010027-r0tl01kq 973 6 trauma trauma NN cord-010027-r0tl01kq 973 7 patients patient NNS cord-010027-r0tl01kq 973 8 are be VBP cord-010027-r0tl01kq 973 9 recorded record VBN cord-010027-r0tl01kq 973 10 onto onto IN cord-010027-r0tl01kq 973 11 the the DT cord-010027-r0tl01kq 973 12 Trauma Trauma NNP cord-010027-r0tl01kq 973 13 Audit Audit NNP cord-010027-r0tl01kq 973 14 & & CC cord-010027-r0tl01kq 973 15 Research Research NNP cord-010027-r0tl01kq 973 16 Network Network NNP cord-010027-r0tl01kq 973 17 ( ( -LRB- cord-010027-r0tl01kq 973 18 TARN TARN NNP cord-010027-r0tl01kq 973 19 ) ) -RRB- cord-010027-r0tl01kq 973 20 database database NN cord-010027-r0tl01kq 973 21 . . . cord-010027-r0tl01kq 974 1 The the DT cord-010027-r0tl01kq 974 2 TARN TARN NNP cord-010027-r0tl01kq 974 3 data datum NNS cord-010027-r0tl01kq 974 4 was be VBD cord-010027-r0tl01kq 974 5 retrospectively retrospectively RB cord-010027-r0tl01kq 974 6 analysed analyse VBN cord-010027-r0tl01kq 974 7 and and CC cord-010027-r0tl01kq 974 8 cross cross NN cord-010027-r0tl01kq 974 9 referenced reference VBN cord-010027-r0tl01kq 974 10 with with IN cord-010027-r0tl01kq 974 11 the the DT cord-010027-r0tl01kq 974 12 Department Department NNP cord-010027-r0tl01kq 974 13 of of IN cord-010027-r0tl01kq 974 14 Cellular Cellular NNP cord-010027-r0tl01kq 974 15 and and CC cord-010027-r0tl01kq 974 16 Anatomical Anatomical NNP cord-010027-r0tl01kq 974 17 Pathologies Pathologies NNPS cord-010027-r0tl01kq 974 18 database database NN cord-010027-r0tl01kq 974 19 to to TO cord-010027-r0tl01kq 974 20 determine determine VB cord-010027-r0tl01kq 974 21 how how WRB cord-010027-r0tl01kq 974 22 many many JJ cord-010027-r0tl01kq 974 23 patients patient NNS cord-010027-r0tl01kq 974 24 had have VBD cord-010027-r0tl01kq 974 25 died die VBN cord-010027-r0tl01kq 974 26 , , , cord-010027-r0tl01kq 974 27 how how WRB cord-010027-r0tl01kq 974 28 many many JJ cord-010027-r0tl01kq 974 29 had have VBD cord-010027-r0tl01kq 974 30 post post JJ cord-010027-r0tl01kq 974 31 - - JJ cord-010027-r0tl01kq 974 32 mortem mortem JJ cord-010027-r0tl01kq 974 33 examinations examination NNS cord-010027-r0tl01kq 974 34 were be VBD cord-010027-r0tl01kq 974 35 performed perform VBN cord-010027-r0tl01kq 974 36 and and CC cord-010027-r0tl01kq 974 37 how how WRB cord-010027-r0tl01kq 974 38 many many JJ cord-010027-r0tl01kq 974 39 surgical surgical JJ cord-010027-r0tl01kq 974 40 specimens specimen NNS cord-010027-r0tl01kq 974 41 were be VBD cord-010027-r0tl01kq 974 42 sent send VBN cord-010027-r0tl01kq 974 43 , , , cord-010027-r0tl01kq 974 44 on on IN cord-010027-r0tl01kq 974 45 patients patient NNS cord-010027-r0tl01kq 974 46 from from IN cord-010027-r0tl01kq 974 47 outside outside IN cord-010027-r0tl01kq 974 48 the the DT cord-010027-r0tl01kq 974 49 region region NN cord-010027-r0tl01kq 974 50 or or CC cord-010027-r0tl01kq 974 51 transferred transfer VBN cord-010027-r0tl01kq 974 52 from from IN cord-010027-r0tl01kq 974 53 smaller small JJR cord-010027-r0tl01kq 974 54 Major Major NNP cord-010027-r0tl01kq 974 55 Trauma Trauma NNP cord-010027-r0tl01kq 974 56 Units Units NNPS cord-010027-r0tl01kq 974 57 . . . cord-010027-r0tl01kq 975 1 Results result NNS cord-010027-r0tl01kq 975 2 : : : cord-010027-r0tl01kq 976 1 Over over IN cord-010027-r0tl01kq 976 2 the the DT cord-010027-r0tl01kq 976 3 first first JJ cord-010027-r0tl01kq 976 4 two two CD cord-010027-r0tl01kq 976 5 years year NNS cord-010027-r0tl01kq 976 6 , , , cord-010027-r0tl01kq 976 7 there there EX cord-010027-r0tl01kq 976 8 was be VBD cord-010027-r0tl01kq 976 9 a a DT cord-010027-r0tl01kq 976 10 small small JJ cord-010027-r0tl01kq 976 11 increase increase NN cord-010027-r0tl01kq 976 12 in in IN cord-010027-r0tl01kq 976 13 workload workload NN cord-010027-r0tl01kq 976 14 from from IN cord-010027-r0tl01kq 976 15 patients patient NNS cord-010027-r0tl01kq 976 16 who who WP cord-010027-r0tl01kq 976 17 , , , cord-010027-r0tl01kq 976 18 prior prior RB cord-010027-r0tl01kq 976 19 to to IN cord-010027-r0tl01kq 976 20 Trauma Trauma NNP cord-010027-r0tl01kq 976 21 Centre Centre NNP cord-010027-r0tl01kq 976 22 status status NN cord-010027-r0tl01kq 976 23 would would MD cord-010027-r0tl01kq 976 24 have have VB cord-010027-r0tl01kq 976 25 gone go VBN cord-010027-r0tl01kq 976 26 to to IN cord-010027-r0tl01kq 976 27 other other JJ cord-010027-r0tl01kq 976 28 centres centre NNS cord-010027-r0tl01kq 976 29 . . . cord-010027-r0tl01kq 977 1 Conclusions conclusion NNS cord-010027-r0tl01kq 977 2 : : : cord-010027-r0tl01kq 978 1 In in IN cord-010027-r0tl01kq 978 2 recieveing recievee VBG cord-010027-r0tl01kq 978 3 patients patient NNS cord-010027-r0tl01kq 978 4 from from IN cord-010027-r0tl01kq 978 5 elsewhere elsewhere RB cord-010027-r0tl01kq 978 6 in in IN cord-010027-r0tl01kq 978 7 the the DT cord-010027-r0tl01kq 978 8 region region NN cord-010027-r0tl01kq 978 9 , , , cord-010027-r0tl01kq 978 10 there there EX cord-010027-r0tl01kq 978 11 was be VBD cord-010027-r0tl01kq 978 12 an an DT cord-010027-r0tl01kq 978 13 increase increase NN cord-010027-r0tl01kq 978 14 in in IN cord-010027-r0tl01kq 978 15 workload workload NN cord-010027-r0tl01kq 978 16 for for IN cord-010027-r0tl01kq 978 17 both both DT cord-010027-r0tl01kq 978 18 autopsy autopsy JJ cord-010027-r0tl01kq 978 19 and and CC cord-010027-r0tl01kq 978 20 non non JJ cord-010027-r0tl01kq 978 21 - - JJ cord-010027-r0tl01kq 978 22 autopsy autopsy JJ cord-010027-r0tl01kq 978 23 work work NN cord-010027-r0tl01kq 978 24 . . . cord-010027-r0tl01kq 979 1 This this DT cord-010027-r0tl01kq 979 2 excluded exclude VBD cord-010027-r0tl01kq 979 3 some some DT cord-010027-r0tl01kq 979 4 neurosurgical neurosurgical JJ cord-010027-r0tl01kq 979 5 cases case NNS cord-010027-r0tl01kq 979 6 , , , cord-010027-r0tl01kq 979 7 which which WDT cord-010027-r0tl01kq 979 8 traditionally traditionally RB cord-010027-r0tl01kq 979 9 would would MD cord-010027-r0tl01kq 979 10 have have VB cord-010027-r0tl01kq 979 11 been be VBN cord-010027-r0tl01kq 979 12 referred refer VBN cord-010027-r0tl01kq 979 13 ( ( -LRB- cord-010027-r0tl01kq 979 14 as as IN cord-010027-r0tl01kq 979 15 Derriford Derriford NNP cord-010027-r0tl01kq 979 16 is be VBZ cord-010027-r0tl01kq 979 17 the the DT cord-010027-r0tl01kq 979 18 neurosurgical neurosurgical JJ cord-010027-r0tl01kq 979 19 centre centre NN cord-010027-r0tl01kq 979 20 ) ) -RRB- cord-010027-r0tl01kq 979 21 . . . cord-010027-r0tl01kq 980 1 There there EX cord-010027-r0tl01kq 980 2 are be VBP cord-010027-r0tl01kq 980 3 several several JJ cord-010027-r0tl01kq 980 4 areas area NNS cord-010027-r0tl01kq 980 5 for for IN cord-010027-r0tl01kq 980 6 implication implication NN cord-010027-r0tl01kq 980 7 including include VBG cord-010027-r0tl01kq 980 8 , , , cord-010027-r0tl01kq 980 9 APT apt JJ cord-010027-r0tl01kq 980 10 time time NN cord-010027-r0tl01kq 980 11 , , , cord-010027-r0tl01kq 980 12 mortuary mortuary NN cord-010027-r0tl01kq 980 13 space space NN cord-010027-r0tl01kq 980 14 and and CC cord-010027-r0tl01kq 980 15 non non JJ cord-010027-r0tl01kq 980 16 - - JJ cord-010027-r0tl01kq 980 17 autopsy autopsy JJ cord-010027-r0tl01kq 980 18 surgical surgical JJ cord-010027-r0tl01kq 980 19 work work NN cord-010027-r0tl01kq 980 20 . . . cord-010027-r0tl01kq 981 1 Although although IN cord-010027-r0tl01kq 981 2 the the DT cord-010027-r0tl01kq 981 3 workload workload NN cord-010027-r0tl01kq 981 4 increase increase NN cord-010027-r0tl01kq 981 5 is be VBZ cord-010027-r0tl01kq 981 6 small small JJ cord-010027-r0tl01kq 981 7 , , , cord-010027-r0tl01kq 981 8 at at IN cord-010027-r0tl01kq 981 9 a a DT cord-010027-r0tl01kq 981 10 time time NN cord-010027-r0tl01kq 981 11 when when WRB cord-010027-r0tl01kq 981 12 services service NNS cord-010027-r0tl01kq 981 13 are be VBP cord-010027-r0tl01kq 981 14 being be VBG cord-010027-r0tl01kq 981 15 stretched stretch VBN cord-010027-r0tl01kq 981 16 it -PRON- PRP cord-010027-r0tl01kq 981 17 is be VBZ cord-010027-r0tl01kq 981 18 important important JJ cord-010027-r0tl01kq 981 19 to to TO cord-010027-r0tl01kq 981 20 ensure ensure VB cord-010027-r0tl01kq 981 21 any any DT cord-010027-r0tl01kq 981 22 increase increase NN cord-010027-r0tl01kq 981 23 in in IN cord-010027-r0tl01kq 981 24 work work NN cord-010027-r0tl01kq 981 25 will will MD cord-010027-r0tl01kq 981 26 not not RB cord-010027-r0tl01kq 981 27 be be VB cord-010027-r0tl01kq 981 28 the the DT cord-010027-r0tl01kq 981 29 " " `` cord-010027-r0tl01kq 981 30 straw straw NN cord-010027-r0tl01kq 981 31 that that WDT cord-010027-r0tl01kq 981 32 broke break VBD cord-010027-r0tl01kq 981 33 the the DT cord-010027-r0tl01kq 981 34 camels camel NNS cord-010027-r0tl01kq 981 35 back back RB cord-010027-r0tl01kq 981 36 " " '' cord-010027-r0tl01kq 981 37 and and CC cord-010027-r0tl01kq 981 38 can can MD cord-010027-r0tl01kq 981 39 be be VB cord-010027-r0tl01kq 981 40 dealt deal VBN cord-010027-r0tl01kq 981 41 with with IN cord-010027-r0tl01kq 981 42 accordingly accordingly RB cord-010027-r0tl01kq 981 43 . . . cord-010027-r0tl01kq 982 1 Derriford Derriford NNP cord-010027-r0tl01kq 982 2 Hospital Hospital NNP cord-010027-r0tl01kq 982 3 , , , cord-010027-r0tl01kq 982 4 Plymouth Plymouth NNP cord-010027-r0tl01kq 982 5 , , , cord-010027-r0tl01kq 982 6 UK UK NNP cord-010027-r0tl01kq 983 1 To to TO cord-010027-r0tl01kq 983 2 attempt attempt VB cord-010027-r0tl01kq 983 3 to to TO cord-010027-r0tl01kq 983 4 streamline streamline VB cord-010027-r0tl01kq 983 5 general general JJ cord-010027-r0tl01kq 983 6 pathologist pathologist NN cord-010027-r0tl01kq 983 7 's 's POS cord-010027-r0tl01kq 983 8 approach approach NN cord-010027-r0tl01kq 983 9 to to IN cord-010027-r0tl01kq 983 10 the the DT cord-010027-r0tl01kq 983 11 investigation investigation NN cord-010027-r0tl01kq 983 12 of of IN cord-010027-r0tl01kq 983 13 potentially potentially RB cord-010027-r0tl01kq 983 14 asbestos asbestos NN cord-010027-r0tl01kq 983 15 - - HYPH cord-010027-r0tl01kq 983 16 related relate VBN cord-010027-r0tl01kq 983 17 deaths death NNS cord-010027-r0tl01kq 983 18 Methods method NNS cord-010027-r0tl01kq 983 19 Turnaround Turnaround NNP cord-010027-r0tl01kq 983 20 times time NNS cord-010027-r0tl01kq 983 21 , , , cord-010027-r0tl01kq 983 22 tissue tissue NN cord-010027-r0tl01kq 983 23 sampling sampling NN cord-010027-r0tl01kq 983 24 protocol protocol NN cord-010027-r0tl01kq 983 25 and and CC cord-010027-r0tl01kq 983 26 frequency frequency NN cord-010027-r0tl01kq 983 27 with with IN cord-010027-r0tl01kq 983 28 which which WDT cord-010027-r0tl01kq 983 29 samples sample NNS cord-010027-r0tl01kq 983 30 were be VBD cord-010027-r0tl01kq 983 31 sent send VBN cord-010027-r0tl01kq 983 32 for for IN cord-010027-r0tl01kq 983 33 formal formal JJ cord-010027-r0tl01kq 983 34 fibre fibre NN cord-010027-r0tl01kq 983 35 counts count NNS cord-010027-r0tl01kq 983 36 was be VBD cord-010027-r0tl01kq 983 37 investigated investigate VBN cord-010027-r0tl01kq 983 38 for for IN cord-010027-r0tl01kq 983 39 100 100 CD cord-010027-r0tl01kq 983 40 consecutive consecutive JJ cord-010027-r0tl01kq 983 41 coronial coronial JJ cord-010027-r0tl01kq 983 42 autopsies autopsy NNS cord-010027-r0tl01kq 983 43 at at IN cord-010027-r0tl01kq 983 44 the the DT cord-010027-r0tl01kq 983 45 author author NN cord-010027-r0tl01kq 983 46 's 's POS cord-010027-r0tl01kq 983 47 institution institution NN cord-010027-r0tl01kq 983 48 . . . cord-010027-r0tl01kq 984 1 Colleagues colleague NNS cord-010027-r0tl01kq 984 2 at at IN cord-010027-r0tl01kq 984 3 other other JJ cord-010027-r0tl01kq 984 4 institutions institution NNS cord-010027-r0tl01kq 984 5 were be VBD cord-010027-r0tl01kq 984 6 questioned question VBN cord-010027-r0tl01kq 984 7 about about IN cord-010027-r0tl01kq 984 8 their -PRON- PRP$ cord-010027-r0tl01kq 984 9 own own JJ cord-010027-r0tl01kq 984 10 practice practice NN cord-010027-r0tl01kq 984 11 when when WRB cord-010027-r0tl01kq 984 12 investigating investigate VBG cord-010027-r0tl01kq 984 13 cases case NNS cord-010027-r0tl01kq 984 14 of of IN cord-010027-r0tl01kq 984 15 potential potential JJ cord-010027-r0tl01kq 984 16 asbestosis asbestosis NN cord-010027-r0tl01kq 984 17 , , , cord-010027-r0tl01kq 984 18 lung lung NN cord-010027-r0tl01kq 984 19 cancer cancer NN cord-010027-r0tl01kq 984 20 or or CC cord-010027-r0tl01kq 984 21 mesothelioma mesothelioma NN cord-010027-r0tl01kq 984 22 . . . cord-010027-r0tl01kq 985 1 The the DT cord-010027-r0tl01kq 985 2 author author NN cord-010027-r0tl01kq 985 3 found find VBD cord-010027-r0tl01kq 985 4 no no DT cord-010027-r0tl01kq 985 5 consensus consensus NN cord-010027-r0tl01kq 985 6 in in IN cord-010027-r0tl01kq 985 7 opinion opinion NN cord-010027-r0tl01kq 985 8 on on IN cord-010027-r0tl01kq 985 9 methods method NNS cord-010027-r0tl01kq 985 10 of of IN cord-010027-r0tl01kq 985 11 sampling sampling NN cord-010027-r0tl01kq 985 12 of of IN cord-010027-r0tl01kq 985 13 the the DT cord-010027-r0tl01kq 985 14 lungs lung NNS cord-010027-r0tl01kq 985 15 in in IN cord-010027-r0tl01kq 985 16 potential potential JJ cord-010027-r0tl01kq 985 17 asbestosis asbestosis NN cord-010027-r0tl01kq 985 18 , , , cord-010027-r0tl01kq 985 19 lung lung NN cord-010027-r0tl01kq 985 20 cancer cancer NN cord-010027-r0tl01kq 985 21 or or CC cord-010027-r0tl01kq 985 22 mesothelioma mesothelioma NN cord-010027-r0tl01kq 985 23 . . . cord-010027-r0tl01kq 986 1 The the DT cord-010027-r0tl01kq 986 2 most most RBS cord-010027-r0tl01kq 986 3 common common JJ cord-010027-r0tl01kq 986 4 indication indication NN cord-010027-r0tl01kq 986 5 for for IN cord-010027-r0tl01kq 986 6 samples sample NNS cord-010027-r0tl01kq 986 7 to to TO cord-010027-r0tl01kq 986 8 be be VB cord-010027-r0tl01kq 986 9 sent send VBN cord-010027-r0tl01kq 986 10 for for IN cord-010027-r0tl01kq 986 11 asbestos asbestos NN cord-010027-r0tl01kq 986 12 fibre fibre NN cord-010027-r0tl01kq 986 13 counts count NNS cord-010027-r0tl01kq 986 14 was be VBD cord-010027-r0tl01kq 986 15 for for IN cord-010027-r0tl01kq 986 16 malignant malignant JJ cord-010027-r0tl01kq 986 17 mesothelioma mesothelioma NN cord-010027-r0tl01kq 986 18 . . . cord-010027-r0tl01kq 987 1 Sending send VBG cord-010027-r0tl01kq 987 2 tissue tissue NN cord-010027-r0tl01kq 987 3 for for IN cord-010027-r0tl01kq 987 4 fibre fibre NN cord-010027-r0tl01kq 987 5 counts count NNS cord-010027-r0tl01kq 987 6 led lead VBN cord-010027-r0tl01kq 987 7 to to IN cord-010027-r0tl01kq 987 8 considerable considerable JJ cord-010027-r0tl01kq 987 9 delays delay NNS cord-010027-r0tl01kq 987 10 in in IN cord-010027-r0tl01kq 987 11 the the DT cord-010027-r0tl01kq 987 12 authorisation authorisation NN cord-010027-r0tl01kq 987 13 of of IN cord-010027-r0tl01kq 987 14 postmortem postmortem NN cord-010027-r0tl01kq 987 15 reports report NNS cord-010027-r0tl01kq 987 16 and and CC cord-010027-r0tl01kq 987 17 to to IN cord-010027-r0tl01kq 987 18 significant significant JJ cord-010027-r0tl01kq 987 19 cost cost NN cord-010027-r0tl01kq 987 20 implications implication NNS cord-010027-r0tl01kq 987 21 . . . cord-010027-r0tl01kq 988 1 The the DT cord-010027-r0tl01kq 988 2 author author NN cord-010027-r0tl01kq 988 3 presents present VBZ cord-010027-r0tl01kq 988 4 a a DT cord-010027-r0tl01kq 988 5 pragmatic pragmatic JJ cord-010027-r0tl01kq 988 6 algorithmic algorithmic JJ cord-010027-r0tl01kq 988 7 guide guide NN cord-010027-r0tl01kq 988 8 to to IN cord-010027-r0tl01kq 988 9 approaching approach VBG cord-010027-r0tl01kq 988 10 potentially potentially RB cord-010027-r0tl01kq 988 11 asbestosis asbestosis NN cord-010027-r0tl01kq 988 12 - - HYPH cord-010027-r0tl01kq 988 13 related relate VBN cord-010027-r0tl01kq 988 14 deaths death NNS cord-010027-r0tl01kq 988 15 with with IN cord-010027-r0tl01kq 988 16 suggestions suggestion NNS cord-010027-r0tl01kq 988 17 for for IN cord-010027-r0tl01kq 988 18 sampling sample VBG cord-010027-r0tl01kq 988 19 the the DT cord-010027-r0tl01kq 988 20 lungs lung NNS cord-010027-r0tl01kq 988 21 and and CC cord-010027-r0tl01kq 988 22 tumour tumour NN cord-010027-r0tl01kq 988 23 in in IN cord-010027-r0tl01kq 988 24 all all DT cord-010027-r0tl01kq 988 25 cases case NNS cord-010027-r0tl01kq 988 26 . . . cord-010027-r0tl01kq 989 1 In in IN cord-010027-r0tl01kq 989 2 general general JJ cord-010027-r0tl01kq 989 3 terms term NNS cord-010027-r0tl01kq 989 4 , , , cord-010027-r0tl01kq 989 5 malignant malignant JJ cord-010027-r0tl01kq 989 6 mesothelioma mesothelioma NN cord-010027-r0tl01kq 989 7 previously previously RB cord-010027-r0tl01kq 989 8 confirmed confirm VBD cord-010027-r0tl01kq 989 9 premortem premortem NNP cord-010027-r0tl01kq 989 10 with with IN cord-010027-r0tl01kq 989 11 histology histology NN cord-010027-r0tl01kq 989 12 and and CC cord-010027-r0tl01kq 989 13 immunohistochemistry immunohistochemistry NN cord-010027-r0tl01kq 989 14 should should MD cord-010027-r0tl01kq 989 15 not not RB cord-010027-r0tl01kq 989 16 require require VB cord-010027-r0tl01kq 989 17 extensive extensive JJ cord-010027-r0tl01kq 989 18 postmortem postmortem JJ cord-010027-r0tl01kq 989 19 histological histological JJ cord-010027-r0tl01kq 989 20 sampling sampling NN cord-010027-r0tl01kq 989 21 . . . cord-010027-r0tl01kq 990 1 Lung lung NN cord-010027-r0tl01kq 990 2 cancer cancer NN cord-010027-r0tl01kq 990 3 and and CC cord-010027-r0tl01kq 990 4 asbestosis asbestosis NN cord-010027-r0tl01kq 990 5 require require VBP cord-010027-r0tl01kq 990 6 widespread widespread JJ cord-010027-r0tl01kq 990 7 sampling sampling NN cord-010027-r0tl01kq 990 8 of of IN cord-010027-r0tl01kq 990 9 lung lung NN cord-010027-r0tl01kq 990 10 tissue tissue NN cord-010027-r0tl01kq 990 11 to to TO cord-010027-r0tl01kq 990 12 determine determine VB cord-010027-r0tl01kq 990 13 amphibole amphibole NN cord-010027-r0tl01kq 990 14 count count NN cord-010027-r0tl01kq 990 15 according accord VBG cord-010027-r0tl01kq 990 16 to to IN cord-010027-r0tl01kq 990 17 Helsinki Helsinki NNP cord-010027-r0tl01kq 990 18 criteria criterion NNS cord-010027-r0tl01kq 990 19 in in IN cord-010027-r0tl01kq 990 20 the the DT cord-010027-r0tl01kq 990 21 former former JJ cord-010027-r0tl01kq 990 22 , , , cord-010027-r0tl01kq 990 23 and and CC cord-010027-r0tl01kq 990 24 in in IN cord-010027-r0tl01kq 990 25 the the DT cord-010027-r0tl01kq 990 26 latter latter JJ cord-010027-r0tl01kq 990 27 , , , cord-010027-r0tl01kq 990 28 assessment assessment NN cord-010027-r0tl01kq 990 29 of of IN cord-010027-r0tl01kq 990 30 the the DT cord-010027-r0tl01kq 990 31 distribution distribution NN cord-010027-r0tl01kq 990 32 and and CC cord-010027-r0tl01kq 990 33 degree degree NN cord-010027-r0tl01kq 990 34 of of IN cord-010027-r0tl01kq 990 35 fibrosis fibrosis NN cord-010027-r0tl01kq 990 36 in in IN cord-010027-r0tl01kq 990 37 addition addition NN cord-010027-r0tl01kq 990 38 to to IN cord-010027-r0tl01kq 990 39 fibre fibre NN cord-010027-r0tl01kq 990 40 count count NN cord-010027-r0tl01kq 990 41 . . . cord-010027-r0tl01kq 991 1 One one CD cord-010027-r0tl01kq 991 2 or or CC cord-010027-r0tl01kq 991 3 more more JJR cord-010027-r0tl01kq 991 4 of of IN cord-010027-r0tl01kq 991 5 these these DT cord-010027-r0tl01kq 991 6 tissue tissue NN cord-010027-r0tl01kq 991 7 blocks block NNS cord-010027-r0tl01kq 991 8 can can MD cord-010027-r0tl01kq 991 9 be be VB cord-010027-r0tl01kq 991 10 sent send VBN cord-010027-r0tl01kq 991 11 for for IN cord-010027-r0tl01kq 991 12 formal formal JJ cord-010027-r0tl01kq 991 13 counts count NNS cord-010027-r0tl01kq 991 14 in in IN cord-010027-r0tl01kq 991 15 equivocal equivocal JJ cord-010027-r0tl01kq 991 16 cases case NNS cord-010027-r0tl01kq 991 17 after after IN cord-010027-r0tl01kq 991 18 following follow VBG cord-010027-r0tl01kq 991 19 the the DT cord-010027-r0tl01kq 991 20 algorithmic algorithmic JJ cord-010027-r0tl01kq 991 21 approach approach NN cord-010027-r0tl01kq 991 22 . . . cord-010027-r0tl01kq 992 1 Conclusions conclusion NNS cord-010027-r0tl01kq 993 1 Although although IN cord-010027-r0tl01kq 993 2 predominantly predominantly RB cord-010027-r0tl01kq 993 3 intended intend VBN cord-010027-r0tl01kq 993 4 as as IN cord-010027-r0tl01kq 993 5 a a DT cord-010027-r0tl01kq 993 6 pragmatic pragmatic JJ cord-010027-r0tl01kq 993 7 approach approach NN cord-010027-r0tl01kq 993 8 to to TO cord-010027-r0tl01kq 993 9 assist assist VB cord-010027-r0tl01kq 993 10 the the DT cord-010027-r0tl01kq 993 11 busy busy JJ cord-010027-r0tl01kq 993 12 practicing practice VBG cord-010027-r0tl01kq 993 13 autopsy autopsy JJ cord-010027-r0tl01kq 993 14 pathologist pathologist NN cord-010027-r0tl01kq 993 15 , , , cord-010027-r0tl01kq 993 16 the the DT cord-010027-r0tl01kq 993 17 author author NN cord-010027-r0tl01kq 993 18 believes believe VBZ cord-010027-r0tl01kq 993 19 that that IN cord-010027-r0tl01kq 993 20 the the DT cord-010027-r0tl01kq 993 21 algorithm algorithm NN cord-010027-r0tl01kq 993 22 presented present VBN cord-010027-r0tl01kq 993 23 will will MD cord-010027-r0tl01kq 993 24 help help VB cord-010027-r0tl01kq 993 25 departments department NNS cord-010027-r0tl01kq 993 26 streamline streamline VB cord-010027-r0tl01kq 993 27 their -PRON- PRP$ cord-010027-r0tl01kq 993 28 approach approach NN cord-010027-r0tl01kq 993 29 to to IN cord-010027-r0tl01kq 993 30 these these DT cord-010027-r0tl01kq 993 31 cases case NNS cord-010027-r0tl01kq 993 32 and and CC cord-010027-r0tl01kq 993 33 help help VB cord-010027-r0tl01kq 993 34 the the DT cord-010027-r0tl01kq 993 35 relative relative NN cord-010027-r0tl01kq 993 36 of of IN cord-010027-r0tl01kq 993 37 the the DT cord-010027-r0tl01kq 993 38 deceased deceased JJ cord-010027-r0tl01kq 993 39 gain gain NN cord-010027-r0tl01kq 993 40 access access NN cord-010027-r0tl01kq 993 41 to to IN cord-010027-r0tl01kq 993 42 compensation compensation NN cord-010027-r0tl01kq 993 43 when when WRB cord-010027-r0tl01kq 993 44 appropriate appropriate JJ cord-010027-r0tl01kq 993 45 in in IN cord-010027-r0tl01kq 993 46 a a DT cord-010027-r0tl01kq 993 47 more more RBR cord-010027-r0tl01kq 993 48 timely timely JJ cord-010027-r0tl01kq 993 49 fashion fashion NN cord-010027-r0tl01kq 993 50 . . . cord-010027-r0tl01kq 994 1 Purpose purpose NN cord-010027-r0tl01kq 994 2 of of IN cord-010027-r0tl01kq 994 3 the the DT cord-010027-r0tl01kq 994 4 Study study NN cord-010027-r0tl01kq 994 5 : : : cord-010027-r0tl01kq 994 6 This this DT cord-010027-r0tl01kq 994 7 is be VBZ cord-010027-r0tl01kq 994 8 a a DT cord-010027-r0tl01kq 994 9 case case NN cord-010027-r0tl01kq 994 10 report report NN cord-010027-r0tl01kq 994 11 of of IN cord-010027-r0tl01kq 994 12 a a DT cord-010027-r0tl01kq 994 13 three three CD cord-010027-r0tl01kq 994 14 year year NN cord-010027-r0tl01kq 994 15 old old JJ cord-010027-r0tl01kq 994 16 girl girl NN cord-010027-r0tl01kq 994 17 who who WP cord-010027-r0tl01kq 994 18 died die VBD cord-010027-r0tl01kq 994 19 suddenly suddenly RB cord-010027-r0tl01kq 994 20 at at IN cord-010027-r0tl01kq 994 21 home home NN cord-010027-r0tl01kq 994 22 . . . cord-010027-r0tl01kq 995 1 An an DT cord-010027-r0tl01kq 995 2 autopsy autopsy NN cord-010027-r0tl01kq 995 3 was be VBD cord-010027-r0tl01kq 995 4 performed perform VBN cord-010027-r0tl01kq 995 5 in in IN cord-010027-r0tl01kq 995 6 order order NN cord-010027-r0tl01kq 995 7 to to TO cord-010027-r0tl01kq 995 8 determine determine VB cord-010027-r0tl01kq 995 9 the the DT cord-010027-r0tl01kq 995 10 cause cause NN cord-010027-r0tl01kq 995 11 of of IN cord-010027-r0tl01kq 995 12 death death NN cord-010027-r0tl01kq 995 13 . . . cord-010027-r0tl01kq 996 1 Method method NN cord-010027-r0tl01kq 996 2 : : : cord-010027-r0tl01kq 997 1 An an DT cord-010027-r0tl01kq 997 2 autopsy autopsy NN cord-010027-r0tl01kq 997 3 was be VBD cord-010027-r0tl01kq 997 4 conducted conduct VBN cord-010027-r0tl01kq 997 5 which which WDT cord-010027-r0tl01kq 997 6 showed show VBD cord-010027-r0tl01kq 997 7 no no DT cord-010027-r0tl01kq 997 8 gross gross JJ cord-010027-r0tl01kq 997 9 abnormalities abnormality NNS cord-010027-r0tl01kq 997 10 . . . cord-010027-r0tl01kq 998 1 Microscopy Microscopy NNS cord-010027-r0tl01kq 998 2 of of IN cord-010027-r0tl01kq 998 3 the the DT cord-010027-r0tl01kq 998 4 main main JJ cord-010027-r0tl01kq 998 5 organs organ NNS cord-010027-r0tl01kq 998 6 and and CC cord-010027-r0tl01kq 998 7 microbiological microbiological JJ cord-010027-r0tl01kq 998 8 samples sample NNS cord-010027-r0tl01kq 998 9 were be VBD cord-010027-r0tl01kq 998 10 taken take VBN cord-010027-r0tl01kq 998 11 for for IN cord-010027-r0tl01kq 998 12 further further JJ cord-010027-r0tl01kq 998 13 assessment assessment NN cord-010027-r0tl01kq 998 14 . . . cord-010027-r0tl01kq 999 1 Results result NNS cord-010027-r0tl01kq 999 2 : : : cord-010027-r0tl01kq 1000 1 Histological Histological NNP cord-010027-r0tl01kq 1000 2 assessment assessment NN cord-010027-r0tl01kq 1000 3 of of IN cord-010027-r0tl01kq 1000 4 the the DT cord-010027-r0tl01kq 1000 5 heart heart NN cord-010027-r0tl01kq 1000 6 showed show VBD cord-010027-r0tl01kq 1000 7 multiple multiple JJ cord-010027-r0tl01kq 1000 8 small small JJ cord-010027-r0tl01kq 1000 9 foci foci NN cord-010027-r0tl01kq 1000 10 of of IN cord-010027-r0tl01kq 1000 11 lymphocytes lymphocyte NNS cord-010027-r0tl01kq 1000 12 around around IN cord-010027-r0tl01kq 1000 13 vessels vessel NNS cord-010027-r0tl01kq 1000 14 and and CC cord-010027-r0tl01kq 1000 15 within within IN cord-010027-r0tl01kq 1000 16 the the DT cord-010027-r0tl01kq 1000 17 interstitum interstitum NN cord-010027-r0tl01kq 1000 18 of of IN cord-010027-r0tl01kq 1000 19 the the DT cord-010027-r0tl01kq 1000 20 epicardium epicardium NN cord-010027-r0tl01kq 1000 21 , , , cord-010027-r0tl01kq 1000 22 myocardium myocardium NN cord-010027-r0tl01kq 1000 23 and and CC cord-010027-r0tl01kq 1000 24 subendocardium subendocardium NN cord-010027-r0tl01kq 1000 25 . . . cord-010027-r0tl01kq 1001 1 These these DT cord-010027-r0tl01kq 1001 2 lymphoid lymphoid JJ cord-010027-r0tl01kq 1001 3 aggregates aggregate NNS cord-010027-r0tl01kq 1001 4 consisted consist VBD cord-010027-r0tl01kq 1001 5 of of IN cord-010027-r0tl01kq 1001 6 20 20 CD cord-010027-r0tl01kq 1001 7 - - SYM cord-010027-r0tl01kq 1001 8 30 30 CD cord-010027-r0tl01kq 1001 9 lymphocytes lymphocyte NNS cord-010027-r0tl01kq 1001 10 up up IN cord-010027-r0tl01kq 1001 11 to to IN cord-010027-r0tl01kq 1001 12 larger large JJR cord-010027-r0tl01kq 1001 13 numbers number NNS cord-010027-r0tl01kq 1001 14 of of IN cord-010027-r0tl01kq 1001 15 100 100 CD cord-010027-r0tl01kq 1001 16 lymphocytes lymphocyte NNS cord-010027-r0tl01kq 1001 17 collectively collectively RB cord-010027-r0tl01kq 1001 18 . . . cord-010027-r0tl01kq 1002 1 Several several JJ cord-010027-r0tl01kq 1002 2 foci focus NNS cord-010027-r0tl01kq 1002 3 were be VBD cord-010027-r0tl01kq 1002 4 present present JJ cord-010027-r0tl01kq 1002 5 within within IN cord-010027-r0tl01kq 1002 6 virtually virtually RB cord-010027-r0tl01kq 1002 7 all all DT cord-010027-r0tl01kq 1002 8 of of IN cord-010027-r0tl01kq 1002 9 the the DT cord-010027-r0tl01kq 1002 10 sections section NNS cord-010027-r0tl01kq 1002 11 taken take VBN cord-010027-r0tl01kq 1002 12 in in IN cord-010027-r0tl01kq 1002 13 both both CC cord-010027-r0tl01kq 1002 14 right right NN cord-010027-r0tl01kq 1002 15 and and CC cord-010027-r0tl01kq 1002 16 left left JJ cord-010027-r0tl01kq 1002 17 ventricles ventricle NNS cord-010027-r0tl01kq 1002 18 . . . cord-010027-r0tl01kq 1003 1 There there EX cord-010027-r0tl01kq 1003 2 was be VBD cord-010027-r0tl01kq 1003 3 no no DT cord-010027-r0tl01kq 1003 4 evidence evidence NN cord-010027-r0tl01kq 1003 5 of of IN cord-010027-r0tl01kq 1003 6 myocyte myocyte NNP cord-010027-r0tl01kq 1003 7 necrosis necrosis NN cord-010027-r0tl01kq 1003 8 . . . cord-010027-r0tl01kq 1004 1 Immunohistochemistry Immunohistochemistry NNP cord-010027-r0tl01kq 1004 2 confirmed confirm VBD cord-010027-r0tl01kq 1004 3 they -PRON- PRP cord-010027-r0tl01kq 1004 4 were be VBD cord-010027-r0tl01kq 1004 5 of of IN cord-010027-r0tl01kq 1004 6 T T NNP cord-010027-r0tl01kq 1004 7 lymphocyte lymphocyte NN cord-010027-r0tl01kq 1004 8 cell cell NN cord-010027-r0tl01kq 1004 9 origin origin NN cord-010027-r0tl01kq 1004 10 admixed admix VBN cord-010027-r0tl01kq 1004 11 with with IN cord-010027-r0tl01kq 1004 12 smaller small JJR cord-010027-r0tl01kq 1004 13 numbers number NNS cord-010027-r0tl01kq 1004 14 of of IN cord-010027-r0tl01kq 1004 15 macrophages macrophage NNS cord-010027-r0tl01kq 1004 16 . . . cord-010027-r0tl01kq 1005 1 Histology histology NN cord-010027-r0tl01kq 1005 2 from from IN cord-010027-r0tl01kq 1005 3 the the DT cord-010027-r0tl01kq 1005 4 respiratory respiratory JJ cord-010027-r0tl01kq 1005 5 system system NN cord-010027-r0tl01kq 1005 6 showed show VBD cord-010027-r0tl01kq 1005 7 a a DT cord-010027-r0tl01kq 1005 8 diffuse diffuse JJ cord-010027-r0tl01kq 1005 9 subepithelial subepithelial JJ cord-010027-r0tl01kq 1005 10 lymphocytic lymphocytic JJ cord-010027-r0tl01kq 1005 11 infiltrate infiltrate NN cord-010027-r0tl01kq 1005 12 in in IN cord-010027-r0tl01kq 1005 13 the the DT cord-010027-r0tl01kq 1005 14 larynx larynx NN cord-010027-r0tl01kq 1005 15 and and CC cord-010027-r0tl01kq 1005 16 trachea trachea NN cord-010027-r0tl01kq 1005 17 , , , cord-010027-r0tl01kq 1005 18 and and CC cord-010027-r0tl01kq 1005 19 the the DT cord-010027-r0tl01kq 1005 20 nasopharyngeal nasopharyngeal JJ cord-010027-r0tl01kq 1005 21 samples sample NNS cord-010027-r0tl01kq 1005 22 detected detect VBD cord-010027-r0tl01kq 1005 23 Coronavirus Coronavirus NNP cord-010027-r0tl01kq 1005 24 , , , cord-010027-r0tl01kq 1005 25 Adenovirus Adenovirus NNP cord-010027-r0tl01kq 1005 26 and and CC cord-010027-r0tl01kq 1005 27 two two CD cord-010027-r0tl01kq 1005 28 types type NNS cord-010027-r0tl01kq 1005 29 of of IN cord-010027-r0tl01kq 1005 30 Parainfluenza Parainfluenza NNP cord-010027-r0tl01kq 1005 31 virus virus NN cord-010027-r0tl01kq 1005 32 . . . cord-010027-r0tl01kq 1006 1 However however RB cord-010027-r0tl01kq 1006 2 , , , cord-010027-r0tl01kq 1006 3 viral viral JJ cord-010027-r0tl01kq 1006 4 polymerase polymerase NN cord-010027-r0tl01kq 1006 5 chain chain NN cord-010027-r0tl01kq 1006 6 reaction reaction NN cord-010027-r0tl01kq 1006 7 ( ( -LRB- cord-010027-r0tl01kq 1006 8 PCR PCR NNP cord-010027-r0tl01kq 1006 9 ) ) -RRB- cord-010027-r0tl01kq 1006 10 from from IN cord-010027-r0tl01kq 1006 11 the the DT cord-010027-r0tl01kq 1006 12 cardiac cardiac JJ cord-010027-r0tl01kq 1006 13 tissue tissue NN cord-010027-r0tl01kq 1006 14 was be VBD cord-010027-r0tl01kq 1006 15 negative negative JJ cord-010027-r0tl01kq 1006 16 . . . cord-010027-r0tl01kq 1007 1 Conclusion conclusion NN cord-010027-r0tl01kq 1007 2 : : : cord-010027-r0tl01kq 1008 1 An an DT cord-010027-r0tl01kq 1008 2 unequivocal unequivocal JJ cord-010027-r0tl01kq 1008 3 diagnosis diagnosis NN cord-010027-r0tl01kq 1008 4 of of IN cord-010027-r0tl01kq 1008 5 a a DT cord-010027-r0tl01kq 1008 6 myocarditis myocarditis NN cord-010027-r0tl01kq 1008 7 could could MD cord-010027-r0tl01kq 1008 8 not not RB cord-010027-r0tl01kq 1008 9 be be VB cord-010027-r0tl01kq 1008 10 made make VBN cord-010027-r0tl01kq 1008 11 in in IN cord-010027-r0tl01kq 1008 12 this this DT cord-010027-r0tl01kq 1008 13 case case NN cord-010027-r0tl01kq 1008 14 due due IN cord-010027-r0tl01kq 1008 15 to to IN cord-010027-r0tl01kq 1008 16 the the DT cord-010027-r0tl01kq 1008 17 lack lack NN cord-010027-r0tl01kq 1008 18 of of IN cord-010027-r0tl01kq 1008 19 myocyte myocyte NNP cord-010027-r0tl01kq 1008 20 necrosis necrosis NN cord-010027-r0tl01kq 1008 21 and and CC cord-010027-r0tl01kq 1008 22 the the DT cord-010027-r0tl01kq 1008 23 absence absence NN cord-010027-r0tl01kq 1008 24 of of IN cord-010027-r0tl01kq 1008 25 viral viral JJ cord-010027-r0tl01kq 1008 26 DNA dna NN cord-010027-r0tl01kq 1008 27 within within IN cord-010027-r0tl01kq 1008 28 the the DT cord-010027-r0tl01kq 1008 29 cardiac cardiac JJ cord-010027-r0tl01kq 1008 30 tissue tissue NN cord-010027-r0tl01kq 1008 31 . . . cord-010027-r0tl01kq 1009 1 Genetic genetic JJ cord-010027-r0tl01kq 1009 2 testing testing NN cord-010027-r0tl01kq 1009 3 was be VBD cord-010027-r0tl01kq 1009 4 strongly strongly RB cord-010027-r0tl01kq 1009 5 advised advise VBN cord-010027-r0tl01kq 1009 6 as as IN cord-010027-r0tl01kq 1009 7 splenic splenic JJ cord-010027-r0tl01kq 1009 8 material material NN cord-010027-r0tl01kq 1009 9 had have VBD cord-010027-r0tl01kq 1009 10 been be VBN cord-010027-r0tl01kq 1009 11 taken take VBN cord-010027-r0tl01kq 1009 12 at at IN cord-010027-r0tl01kq 1009 13 autopsy autopsy JJ cord-010027-r0tl01kq 1009 14 and and CC cord-010027-r0tl01kq 1009 15 following follow VBG cord-010027-r0tl01kq 1009 16 molecular molecular JJ cord-010027-r0tl01kq 1009 17 genetic genetic JJ cord-010027-r0tl01kq 1009 18 techniques technique NNS cord-010027-r0tl01kq 1009 19 a a DT cord-010027-r0tl01kq 1009 20 mutation mutation NN cord-010027-r0tl01kq 1009 21 was be VBD cord-010027-r0tl01kq 1009 22 detected detect VBN cord-010027-r0tl01kq 1009 23 in in IN cord-010027-r0tl01kq 1009 24 the the DT cord-010027-r0tl01kq 1009 25 sodium sodium NN cord-010027-r0tl01kq 1009 26 channel channel NN cord-010027-r0tl01kq 1009 27 indicating indicate VBG cord-010027-r0tl01kq 1009 28 an an DT cord-010027-r0tl01kq 1009 29 inherited inherit VBN cord-010027-r0tl01kq 1009 30 ion ion NN cord-010027-r0tl01kq 1009 31 channelopathy channelopathy NN cord-010027-r0tl01kq 1009 32 . . . cord-010027-r0tl01kq 1010 1 Further further JJ cord-010027-r0tl01kq 1010 2 genetic genetic JJ cord-010027-r0tl01kq 1010 3 counselling counselling NN cord-010027-r0tl01kq 1010 4 and and CC cord-010027-r0tl01kq 1010 5 testing testing NN cord-010027-r0tl01kq 1010 6 of of IN cord-010027-r0tl01kq 1010 7 the the DT cord-010027-r0tl01kq 1010 8 remaining remain VBG cord-010027-r0tl01kq 1010 9 siblings sibling NNS cord-010027-r0tl01kq 1010 10 and and CC cord-010027-r0tl01kq 1010 11 family family NN cord-010027-r0tl01kq 1010 12 members member NNS cord-010027-r0tl01kq 1010 13 is be VBZ cord-010027-r0tl01kq 1010 14 being be VBG cord-010027-r0tl01kq 1010 15 performed perform VBN cord-010027-r0tl01kq 1010 16 . . . cord-010027-r0tl01kq 1011 1 Varicose varicose JJ cord-010027-r0tl01kq 1011 2 veins vein NNS cord-010027-r0tl01kq 1011 3 affect affect VBP cord-010027-r0tl01kq 1011 4 a a DT cord-010027-r0tl01kq 1011 5 third third NN cord-010027-r0tl01kq 1011 6 of of IN cord-010027-r0tl01kq 1011 7 the the DT cord-010027-r0tl01kq 1011 8 UK UK NNP cord-010027-r0tl01kq 1011 9 population population NN cord-010027-r0tl01kq 1011 10 . . . cord-010027-r0tl01kq 1012 1 Isolated isolate VBN cord-010027-r0tl01kq 1012 2 case case NN cord-010027-r0tl01kq 1012 3 reports report NNS cord-010027-r0tl01kq 1012 4 and and CC cord-010027-r0tl01kq 1012 5 small small JJ cord-010027-r0tl01kq 1012 6 series series NN cord-010027-r0tl01kq 1012 7 of of IN cord-010027-r0tl01kq 1012 8 fatalities fatality NNS cord-010027-r0tl01kq 1012 9 resulting result VBG cord-010027-r0tl01kq 1012 10 from from IN cord-010027-r0tl01kq 1012 11 varicose varicose JJ cord-010027-r0tl01kq 1012 12 vein vein NN cord-010027-r0tl01kq 1012 13 haemorrhage haemorrhage NN cord-010027-r0tl01kq 1012 14 appear appear VBP cord-010027-r0tl01kq 1012 15 in in IN cord-010027-r0tl01kq 1012 16 the the DT cord-010027-r0tl01kq 1012 17 literature literature NN cord-010027-r0tl01kq 1012 18 infrequently infrequently RB cord-010027-r0tl01kq 1012 19 . . . cord-010027-r0tl01kq 1013 1 Some some DT cord-010027-r0tl01kq 1013 2 of of IN cord-010027-r0tl01kq 1013 3 the the DT cord-010027-r0tl01kq 1013 4 earliest early JJS cord-010027-r0tl01kq 1013 5 reports report NNS cord-010027-r0tl01kq 1013 6 of of IN cord-010027-r0tl01kq 1013 7 fatality fatality NN cord-010027-r0tl01kq 1013 8 we -PRON- PRP cord-010027-r0tl01kq 1013 9 have have VBP cord-010027-r0tl01kq 1013 10 found find VBN cord-010027-r0tl01kq 1013 11 appear appear VBP cord-010027-r0tl01kq 1013 12 in in IN cord-010027-r0tl01kq 1013 13 British British NNP cord-010027-r0tl01kq 1013 14 Medical Medical NNP cord-010027-r0tl01kq 1013 15 Journal Journal NNP cord-010027-r0tl01kq 1013 16 ( ( -LRB- cord-010027-r0tl01kq 1013 17 1958 1958 CD cord-010027-r0tl01kq 1013 18 ) ) -RRB- cord-010027-r0tl01kq 1013 19 and and CC cord-010027-r0tl01kq 1013 20 the the DT cord-010027-r0tl01kq 1013 21 Lancet Lancet NNP cord-010027-r0tl01kq 1013 22 ( ( -LRB- cord-010027-r0tl01kq 1013 23 1973 1973 CD cord-010027-r0tl01kq 1013 24 ) ) -RRB- cord-010027-r0tl01kq 1013 25 , , , cord-010027-r0tl01kq 1013 26 more more RBR cord-010027-r0tl01kq 1013 27 recently recently RB cord-010027-r0tl01kq 1013 28 they -PRON- PRP cord-010027-r0tl01kq 1013 29 have have VBP cord-010027-r0tl01kq 1013 30 appeared appear VBN cord-010027-r0tl01kq 1013 31 in in IN cord-010027-r0tl01kq 1013 32 journals journal NNS cord-010027-r0tl01kq 1013 33 of of IN cord-010027-r0tl01kq 1013 34 forensic forensic JJ cord-010027-r0tl01kq 1013 35 pathology pathology NN cord-010027-r0tl01kq 1013 36 . . . cord-010027-r0tl01kq 1014 1 Our -PRON- PRP$ cord-010027-r0tl01kq 1014 2 purpose purpose NN cord-010027-r0tl01kq 1014 3 is be VBZ cord-010027-r0tl01kq 1014 4 to to TO cord-010027-r0tl01kq 1014 5 establish establish VB cord-010027-r0tl01kq 1014 6 and and CC cord-010027-r0tl01kq 1014 7 bring bring VB cord-010027-r0tl01kq 1014 8 attention attention NN cord-010027-r0tl01kq 1014 9 to to IN cord-010027-r0tl01kq 1014 10 the the DT cord-010027-r0tl01kq 1014 11 rarity rarity NN cord-010027-r0tl01kq 1014 12 of of IN cord-010027-r0tl01kq 1014 13 fatality fatality NN cord-010027-r0tl01kq 1014 14 resulting result VBG cord-010027-r0tl01kq 1014 15 from from IN cord-010027-r0tl01kq 1014 16 varicose varicose JJ cord-010027-r0tl01kq 1014 17 vein vein NN cord-010027-r0tl01kq 1014 18 haemorrhage haemorrhage NN cord-010027-r0tl01kq 1014 19 and and CC cord-010027-r0tl01kq 1014 20 the the DT cord-010027-r0tl01kq 1014 21 importance importance NN cord-010027-r0tl01kq 1014 22 of of IN cord-010027-r0tl01kq 1014 23 the the DT cord-010027-r0tl01kq 1014 24 scene scene NN cord-010027-r0tl01kq 1014 25 of of IN cord-010027-r0tl01kq 1014 26 death death NN cord-010027-r0tl01kq 1014 27 and and CC cord-010027-r0tl01kq 1014 28 autopsy autopsy JJ cord-010027-r0tl01kq 1014 29 findings finding NNS cord-010027-r0tl01kq 1014 30 . . . cord-010027-r0tl01kq 1015 1 A a DT cord-010027-r0tl01kq 1015 2 literature literature NN cord-010027-r0tl01kq 1015 3 review review NN cord-010027-r0tl01kq 1015 4 was be VBD cord-010027-r0tl01kq 1015 5 undertaken undertake VBN cord-010027-r0tl01kq 1015 6 , , , cord-010027-r0tl01kq 1015 7 we -PRON- PRP cord-010027-r0tl01kq 1015 8 obtained obtain VBD cord-010027-r0tl01kq 1015 9 relevant relevant JJ cord-010027-r0tl01kq 1015 10 Office Office NNP cord-010027-r0tl01kq 1015 11 of of IN cord-010027-r0tl01kq 1015 12 National National NNP cord-010027-r0tl01kq 1015 13 Statistics Statistics NNPS cord-010027-r0tl01kq 1015 14 ( ( -LRB- cord-010027-r0tl01kq 1015 15 ONS ONS NNP cord-010027-r0tl01kq 1015 16 ) ) -RRB- cord-010027-r0tl01kq 1015 17 mortality mortality NN cord-010027-r0tl01kq 1015 18 data datum NNS cord-010027-r0tl01kq 1015 19 for for IN cord-010027-r0tl01kq 1015 20 the the DT cord-010027-r0tl01kq 1015 21 years year NNS cord-010027-r0tl01kq 1015 22 2011 2011 CD cord-010027-r0tl01kq 1015 23 - - SYM cord-010027-r0tl01kq 1015 24 2013 2013 CD cord-010027-r0tl01kq 1015 25 , , , cord-010027-r0tl01kq 1015 26 and and CC cord-010027-r0tl01kq 1015 27 reviewed review VBD cord-010027-r0tl01kq 1015 28 our -PRON- PRP$ cord-010027-r0tl01kq 1015 29 own own JJ cord-010027-r0tl01kq 1015 30 post post JJ cord-010027-r0tl01kq 1015 31 - - JJ cord-010027-r0tl01kq 1015 32 mortem mortem JJ cord-010027-r0tl01kq 1015 33 records record NNS cord-010027-r0tl01kq 1015 34 for for IN cord-010027-r0tl01kq 1015 35 demographic demographic JJ cord-010027-r0tl01kq 1015 36 , , , cord-010027-r0tl01kq 1015 37 clinical clinical JJ cord-010027-r0tl01kq 1015 38 and and CC cord-010027-r0tl01kq 1015 39 scene scene NN cord-010027-r0tl01kq 1015 40 of of IN cord-010027-r0tl01kq 1015 41 death death NN cord-010027-r0tl01kq 1015 42 information information NN cord-010027-r0tl01kq 1015 43 in in IN cord-010027-r0tl01kq 1015 44 cases case NNS cord-010027-r0tl01kq 1015 45 we -PRON- PRP cord-010027-r0tl01kq 1015 46 have have VBP cord-010027-r0tl01kq 1015 47 encountered encounter VBN cord-010027-r0tl01kq 1015 48 . . . cord-010027-r0tl01kq 1016 1 Our -PRON- PRP$ cord-010027-r0tl01kq 1016 2 findings finding NNS cord-010027-r0tl01kq 1016 3 confirm confirm VBP cord-010027-r0tl01kq 1016 4 that that IN cord-010027-r0tl01kq 1016 5 fatality fatality NN cord-010027-r0tl01kq 1016 6 resulting result VBG cord-010027-r0tl01kq 1016 7 from from IN cord-010027-r0tl01kq 1016 8 varicose varicose JJ cord-010027-r0tl01kq 1016 9 veins vein NNS cord-010027-r0tl01kq 1016 10 remains remain VBZ cord-010027-r0tl01kq 1016 11 a a DT cord-010027-r0tl01kq 1016 12 rare rare JJ cord-010027-r0tl01kq 1016 13 cause cause NN cord-010027-r0tl01kq 1016 14 of of IN cord-010027-r0tl01kq 1016 15 death death NN cord-010027-r0tl01kq 1016 16 . . . cord-010027-r0tl01kq 1017 1 Some some DT cord-010027-r0tl01kq 1017 2 of of IN cord-010027-r0tl01kq 1017 3 these these DT cord-010027-r0tl01kq 1017 4 deaths death NNS cord-010027-r0tl01kq 1017 5 are be VBP cord-010027-r0tl01kq 1017 6 preventable preventable JJ cord-010027-r0tl01kq 1017 7 and and CC cord-010027-r0tl01kq 1017 8 in in IN cord-010027-r0tl01kq 1017 9 2013 2013 CD cord-010027-r0tl01kq 1017 10 NICE nice JJ cord-010027-r0tl01kq 1017 11 ( ( -LRB- cord-010027-r0tl01kq 1017 12 National National NNP cord-010027-r0tl01kq 1017 13 Institute Institute NNP cord-010027-r0tl01kq 1017 14 of of IN cord-010027-r0tl01kq 1017 15 Health Health NNP cord-010027-r0tl01kq 1017 16 and and CC cord-010027-r0tl01kq 1017 17 Care Care NNP cord-010027-r0tl01kq 1017 18 Excellence Excellence NNP cord-010027-r0tl01kq 1017 19 , , , cord-010027-r0tl01kq 1017 20 UK UK NNP cord-010027-r0tl01kq 1017 21 ) ) -RRB- cord-010027-r0tl01kq 1017 22 issued issue VBD cord-010027-r0tl01kq 1017 23 guidelines guideline NNS cord-010027-r0tl01kq 1017 24 in in IN cord-010027-r0tl01kq 1017 25 which which WDT cord-010027-r0tl01kq 1017 26 haemorrhage haemorrhage NN cord-010027-r0tl01kq 1017 27 from from IN cord-010027-r0tl01kq 1017 28 varicose varicose JJ cord-010027-r0tl01kq 1017 29 veins vein NNS cord-010027-r0tl01kq 1017 30 constitute constitute VBP cord-010027-r0tl01kq 1017 31 a a DT cord-010027-r0tl01kq 1017 32 vascular vascular JJ cord-010027-r0tl01kq 1017 33 emergency emergency NN cord-010027-r0tl01kq 1017 34 . . . cord-010027-r0tl01kq 1018 1 Importantly importantly RB cord-010027-r0tl01kq 1018 2 emphasis emphasis NN cord-010027-r0tl01kq 1018 3 on on IN cord-010027-r0tl01kq 1018 4 first first JJ cord-010027-r0tl01kq 1018 5 aid aid NN cord-010027-r0tl01kq 1018 6 is be VBZ cord-010027-r0tl01kq 1018 7 required require VBN cord-010027-r0tl01kq 1018 8 , , , cord-010027-r0tl01kq 1018 9 simply simply RB cord-010027-r0tl01kq 1018 10 elevating elevate VBG cord-010027-r0tl01kq 1018 11 the the DT cord-010027-r0tl01kq 1018 12 limb limb NN cord-010027-r0tl01kq 1018 13 stops stop VBZ cord-010027-r0tl01kq 1018 14 bleeding bleed VBG cord-010027-r0tl01kq 1018 15 and and CC cord-010027-r0tl01kq 1018 16 is be VBZ cord-010027-r0tl01kq 1018 17 life life NN cord-010027-r0tl01kq 1018 18 saving saving NN cord-010027-r0tl01kq 1018 19 , , , cord-010027-r0tl01kq 1018 20 whereas whereas IN cord-010027-r0tl01kq 1018 21 direct direct JJ cord-010027-r0tl01kq 1018 22 pressure pressure NN cord-010027-r0tl01kq 1018 23 and and CC cord-010027-r0tl01kq 1018 24 tourniquets tourniquet NNS cord-010027-r0tl01kq 1018 25 do do VBP cord-010027-r0tl01kq 1018 26 not not RB cord-010027-r0tl01kq 1018 27 . . . cord-010027-r0tl01kq 1019 1 Pathologists pathologist NNS cord-010027-r0tl01kq 1019 2 should should MD cord-010027-r0tl01kq 1019 3 be be VB cord-010027-r0tl01kq 1019 4 aware aware JJ cord-010027-r0tl01kq 1019 5 of of IN cord-010027-r0tl01kq 1019 6 potential potential JJ cord-010027-r0tl01kq 1019 7 findings finding NNS cord-010027-r0tl01kq 1019 8 at at IN cord-010027-r0tl01kq 1019 9 autopsy autopsy NN cord-010027-r0tl01kq 1019 10 in in IN cord-010027-r0tl01kq 1019 11 these these DT cord-010027-r0tl01kq 1019 12 cases case NNS cord-010027-r0tl01kq 1019 13 . . . cord-010027-r0tl01kq 1020 1 In in IN cord-010027-r0tl01kq 1020 2 particular particular JJ cord-010027-r0tl01kq 1020 3 , , , cord-010027-r0tl01kq 1020 4 awareness awareness NN cord-010027-r0tl01kq 1020 5 that that IN cord-010027-r0tl01kq 1020 6 even even RB cord-010027-r0tl01kq 1020 7 obscure obscure JJ cord-010027-r0tl01kq 1020 8 minor minor JJ cord-010027-r0tl01kq 1020 9 injury injury NN cord-010027-r0tl01kq 1020 10 to to IN cord-010027-r0tl01kq 1020 11 a a DT cord-010027-r0tl01kq 1020 12 varicose varicose JJ cord-010027-r0tl01kq 1020 13 vein vein NN cord-010027-r0tl01kq 1020 14 could could MD cord-010027-r0tl01kq 1020 15 have have VB cord-010027-r0tl01kq 1020 16 resulted result VBN cord-010027-r0tl01kq 1020 17 in in IN cord-010027-r0tl01kq 1020 18 significant significant JJ cord-010027-r0tl01kq 1020 19 blood blood NN cord-010027-r0tl01kq 1020 20 loss loss NN cord-010027-r0tl01kq 1020 21 leading lead VBG cord-010027-r0tl01kq 1020 22 to to IN cord-010027-r0tl01kq 1020 23 death death NN cord-010027-r0tl01kq 1020 24 . . . cord-010027-r0tl01kq 1021 1 Blood blood NN cord-010027-r0tl01kq 1021 2 lost lose VBN cord-010027-r0tl01kq 1021 3 at at IN cord-010027-r0tl01kq 1021 4 the the DT cord-010027-r0tl01kq 1021 5 scene scene NN cord-010027-r0tl01kq 1021 6 will will MD cord-010027-r0tl01kq 1021 7 not not RB cord-010027-r0tl01kq 1021 8 be be VB cord-010027-r0tl01kq 1021 9 apparent apparent JJ cord-010027-r0tl01kq 1021 10 at at IN cord-010027-r0tl01kq 1021 11 autopsy autopsy JJ cord-010027-r0tl01kq 1021 12 , , , cord-010027-r0tl01kq 1021 13 and and CC cord-010027-r0tl01kq 1021 14 details detail NNS cord-010027-r0tl01kq 1021 15 of of IN cord-010027-r0tl01kq 1021 16 blood blood NN cord-010027-r0tl01kq 1021 17 loss loss NN cord-010027-r0tl01kq 1021 18 could could MD cord-010027-r0tl01kq 1021 19 be be VB cord-010027-r0tl01kq 1021 20 variably variably RB cord-010027-r0tl01kq 1021 21 recorded record VBN cord-010027-r0tl01kq 1021 22 on on IN cord-010027-r0tl01kq 1021 23 the the DT cord-010027-r0tl01kq 1021 24 scene scene NN cord-010027-r0tl01kq 1021 25 of of IN cord-010027-r0tl01kq 1021 26 death death NN cord-010027-r0tl01kq 1021 27 information information NN cord-010027-r0tl01kq 1021 28 provided provide VBN cord-010027-r0tl01kq 1021 29 , , , cord-010027-r0tl01kq 1021 30 therefore therefore RB cord-010027-r0tl01kq 1021 31 vigilance vigilance NN cord-010027-r0tl01kq 1021 32 is be VBZ cord-010027-r0tl01kq 1021 33 required require VBN cord-010027-r0tl01kq 1021 34 . . . cord-010027-r0tl01kq 1022 1 Histopathologists histopathologist NNS cord-010027-r0tl01kq 1022 2 practice practice VBP cord-010027-r0tl01kq 1022 3 in in IN cord-010027-r0tl01kq 1022 4 an an DT cord-010027-r0tl01kq 1022 5 era era NN cord-010027-r0tl01kq 1022 6 of of IN cord-010027-r0tl01kq 1022 7 ever ever RB cord-010027-r0tl01kq 1022 8 advancing advance VBG cord-010027-r0tl01kq 1022 9 medical medical JJ cord-010027-r0tl01kq 1022 10 treatments treatment NNS cord-010027-r0tl01kq 1022 11 for for IN cord-010027-r0tl01kq 1022 12 a a DT cord-010027-r0tl01kq 1022 13 wide wide JJ cord-010027-r0tl01kq 1022 14 variety variety NN cord-010027-r0tl01kq 1022 15 of of IN cord-010027-r0tl01kq 1022 16 oncological oncological JJ cord-010027-r0tl01kq 1022 17 , , , cord-010027-r0tl01kq 1022 18 neurological neurological JJ cord-010027-r0tl01kq 1022 19 , , , cord-010027-r0tl01kq 1022 20 haematological haematological JJ cord-010027-r0tl01kq 1022 21 and and CC cord-010027-r0tl01kq 1022 22 rheumatological rheumatological JJ cord-010027-r0tl01kq 1022 23 diseases disease NNS cord-010027-r0tl01kq 1022 24 . . . cord-010027-r0tl01kq 1023 1 Immune immune JJ cord-010027-r0tl01kq 1023 2 modulating modulate VBG cord-010027-r0tl01kq 1023 3 therapies therapy NNS cord-010027-r0tl01kq 1023 4 are be VBP cord-010027-r0tl01kq 1023 5 taking take VBG cord-010027-r0tl01kq 1023 6 a a DT cord-010027-r0tl01kq 1023 7 more more RBR cord-010027-r0tl01kq 1023 8 prominent prominent JJ cord-010027-r0tl01kq 1023 9 place place NN cord-010027-r0tl01kq 1023 10 in in IN cord-010027-r0tl01kq 1023 11 clinical clinical JJ cord-010027-r0tl01kq 1023 12 practice practice NN cord-010027-r0tl01kq 1023 13 . . . cord-010027-r0tl01kq 1024 1 However however RB cord-010027-r0tl01kq 1024 2 , , , cord-010027-r0tl01kq 1024 3 with with IN cord-010027-r0tl01kq 1024 4 such such JJ cord-010027-r0tl01kq 1024 5 great great JJ cord-010027-r0tl01kq 1024 6 advances advance NNS cord-010027-r0tl01kq 1024 7 in in IN cord-010027-r0tl01kq 1024 8 therapy therapy NN cord-010027-r0tl01kq 1024 9 comes come VBZ cord-010027-r0tl01kq 1024 10 great great JJ cord-010027-r0tl01kq 1024 11 risk risk NN cord-010027-r0tl01kq 1024 12 , , , cord-010027-r0tl01kq 1024 13 with with IN cord-010027-r0tl01kq 1024 14 the the DT cord-010027-r0tl01kq 1024 15 potential potential NN cord-010027-r0tl01kq 1024 16 of of IN cord-010027-r0tl01kq 1024 17 life life NN cord-010027-r0tl01kq 1024 18 threatening threaten VBG cord-010027-r0tl01kq 1024 19 opportunistic opportunistic JJ cord-010027-r0tl01kq 1024 20 infections infection NNS cord-010027-r0tl01kq 1024 21 in in IN cord-010027-r0tl01kq 1024 22 our -PRON- PRP$ cord-010027-r0tl01kq 1024 23 patients patient NNS cord-010027-r0tl01kq 1024 24 . . . cord-010027-r0tl01kq 1025 1 We -PRON- PRP cord-010027-r0tl01kq 1025 2 present present VBP cord-010027-r0tl01kq 1025 3 a a DT cord-010027-r0tl01kq 1025 4 series series NN cord-010027-r0tl01kq 1025 5 of of IN cord-010027-r0tl01kq 1025 6 9 9 CD cord-010027-r0tl01kq 1025 7 immunosuppressed immunosuppressed JJ cord-010027-r0tl01kq 1025 8 patients patient NNS cord-010027-r0tl01kq 1025 9 who who WP cord-010027-r0tl01kq 1025 10 acquired acquire VBD cord-010027-r0tl01kq 1025 11 such such JJ cord-010027-r0tl01kq 1025 12 infections infection NNS cord-010027-r0tl01kq 1025 13 and and CC cord-010027-r0tl01kq 1025 14 in in IN cord-010027-r0tl01kq 1025 15 whom whom WP cord-010027-r0tl01kq 1025 16 the the DT cord-010027-r0tl01kq 1025 17 diagnoses diagnosis NNS cord-010027-r0tl01kq 1025 18 were be VBD cord-010027-r0tl01kq 1025 19 made make VBN cord-010027-r0tl01kq 1025 20 by by IN cord-010027-r0tl01kq 1025 21 histopathological histopathological JJ cord-010027-r0tl01kq 1025 22 examination examination NN cord-010027-r0tl01kq 1025 23 . . . cord-010027-r0tl01kq 1026 1 The the DT cord-010027-r0tl01kq 1026 2 spectrum spectrum NN cord-010027-r0tl01kq 1026 3 of of IN cord-010027-r0tl01kq 1026 4 these these DT cord-010027-r0tl01kq 1026 5 pathogens pathogen NNS cord-010027-r0tl01kq 1026 6 ranges range VBZ cord-010027-r0tl01kq 1026 7 from from IN cord-010027-r0tl01kq 1026 8 viral viral JJ cord-010027-r0tl01kq 1026 9 ( ( -LRB- cord-010027-r0tl01kq 1026 10 CMV CMV NNP cord-010027-r0tl01kq 1026 11 , , , cord-010027-r0tl01kq 1026 12 EBV EBV NNP cord-010027-r0tl01kq 1026 13 , , , cord-010027-r0tl01kq 1026 14 Herpes Herpes NNP cord-010027-r0tl01kq 1026 15 ) ) -RRB- cord-010027-r0tl01kq 1026 16 , , , cord-010027-r0tl01kq 1026 17 parasitic parasitic JJ cord-010027-r0tl01kq 1026 18 ( ( -LRB- cord-010027-r0tl01kq 1026 19 strongyloides strongyloide NNS cord-010027-r0tl01kq 1026 20 ) ) -RRB- cord-010027-r0tl01kq 1026 21 to to TO cord-010027-r0tl01kq 1026 22 fungal fungal VB cord-010027-r0tl01kq 1026 23 ( ( -LRB- cord-010027-r0tl01kq 1026 24 P. P. NNP cord-010027-r0tl01kq 1026 25 jirovecii jirovecii NNP cord-010027-r0tl01kq 1026 26 , , , cord-010027-r0tl01kq 1026 27 cryptococcus cryptococcus NNP cord-010027-r0tl01kq 1026 28 ) ) -RRB- cord-010027-r0tl01kq 1026 29 , , , cord-010027-r0tl01kq 1026 30 and and CC cord-010027-r0tl01kq 1026 31 the the DT cord-010027-r0tl01kq 1026 32 range range NN cord-010027-r0tl01kq 1026 33 of of IN cord-010027-r0tl01kq 1026 34 infections infection NNS cord-010027-r0tl01kq 1026 35 is be VBZ cord-010027-r0tl01kq 1026 36 diverse diverse JJ cord-010027-r0tl01kq 1026 37 . . . cord-010027-r0tl01kq 1027 1 Our -PRON- PRP$ cord-010027-r0tl01kq 1027 2 series series NN cord-010027-r0tl01kq 1027 3 includes include VBZ cord-010027-r0tl01kq 1027 4 4 4 CD cord-010027-r0tl01kq 1027 5 males male NNS cord-010027-r0tl01kq 1027 6 and and CC cord-010027-r0tl01kq 1027 7 5 5 CD cord-010027-r0tl01kq 1027 8 females female NNS cord-010027-r0tl01kq 1027 9 , , , cord-010027-r0tl01kq 1027 10 with with IN cord-010027-r0tl01kq 1027 11 an an DT cord-010027-r0tl01kq 1027 12 age age NN cord-010027-r0tl01kq 1027 13 range range NN cord-010027-r0tl01kq 1027 14 of of IN cord-010027-r0tl01kq 1027 15 32 32 CD cord-010027-r0tl01kq 1027 16 -72 -72 NN cord-010027-r0tl01kq 1028 1 ( ( -LRB- cord-010027-r0tl01kq 1028 2 mean mean VB cord-010027-r0tl01kq 1028 3 age age NN cord-010027-r0tl01kq 1028 4 = = SYM cord-010027-r0tl01kq 1028 5 57 57 CD cord-010027-r0tl01kq 1028 6 years year NNS cord-010027-r0tl01kq 1028 7 ) ) -RRB- cord-010027-r0tl01kq 1028 8 . . . cord-010027-r0tl01kq 1029 1 Unsuspected unsuspected JJ cord-010027-r0tl01kq 1029 2 infectious infectious JJ cord-010027-r0tl01kq 1029 3 diagnoses diagnosis NNS cord-010027-r0tl01kq 1029 4 were be VBD cord-010027-r0tl01kq 1029 5 made make VBN cord-010027-r0tl01kq 1029 6 at at IN cord-010027-r0tl01kq 1029 7 post post FW cord-010027-r0tl01kq 1029 8 mortem mortem NN cord-010027-r0tl01kq 1029 9 in in IN cord-010027-r0tl01kq 1029 10 6 6 CD cord-010027-r0tl01kq 1029 11 of of IN cord-010027-r0tl01kq 1029 12 the the DT cord-010027-r0tl01kq 1029 13 9 9 CD cord-010027-r0tl01kq 1029 14 cases case NNS cord-010027-r0tl01kq 1029 15 . . . cord-010027-r0tl01kq 1030 1 Organs organ NNS cord-010027-r0tl01kq 1030 2 affected affect VBD cord-010027-r0tl01kq 1030 3 included include VBD cord-010027-r0tl01kq 1030 4 lung lung NN cord-010027-r0tl01kq 1030 5 ( ( -LRB- cord-010027-r0tl01kq 1030 6 n n NN cord-010027-r0tl01kq 1030 7 = = SYM cord-010027-r0tl01kq 1030 8 5 5 CD cord-010027-r0tl01kq 1030 9 ) ) -RRB- cord-010027-r0tl01kq 1030 10 , , , cord-010027-r0tl01kq 1030 11 brain brain NN cord-010027-r0tl01kq 1030 12 ( ( -LRB- cord-010027-r0tl01kq 1030 13 n n NN cord-010027-r0tl01kq 1030 14 = = SYM cord-010027-r0tl01kq 1030 15 1 1 CD cord-010027-r0tl01kq 1030 16 ) ) -RRB- cord-010027-r0tl01kq 1030 17 and and CC cord-010027-r0tl01kq 1030 18 haematological haematological JJ cord-010027-r0tl01kq 1030 19 system system NN cord-010027-r0tl01kq 1030 20 ( ( -LRB- cord-010027-r0tl01kq 1030 21 n n NN cord-010027-r0tl01kq 1030 22 = = SYM cord-010027-r0tl01kq 1030 23 1 1 CD cord-010027-r0tl01kq 1030 24 ) ) -RRB- cord-010027-r0tl01kq 1030 25 . . . cord-010027-r0tl01kq 1031 1 In in IN cord-010027-r0tl01kq 1031 2 one one CD cord-010027-r0tl01kq 1031 3 case case NN cord-010027-r0tl01kq 1031 4 both both DT cord-010027-r0tl01kq 1031 5 colon colon NN cord-010027-r0tl01kq 1031 6 and and CC cord-010027-r0tl01kq 1031 7 lung lung NN cord-010027-r0tl01kq 1031 8 were be VBD cord-010027-r0tl01kq 1031 9 affected affect VBN cord-010027-r0tl01kq 1031 10 ( ( -LRB- cord-010027-r0tl01kq 1031 11 n=1 n=1 NN cord-010027-r0tl01kq 1031 12 ) ) -RRB- cord-010027-r0tl01kq 1031 13 and and CC cord-010027-r0tl01kq 1031 14 in in IN cord-010027-r0tl01kq 1031 15 a a DT cord-010027-r0tl01kq 1031 16 further further JJ cord-010027-r0tl01kq 1031 17 case case NN cord-010027-r0tl01kq 1031 18 both both CC cord-010027-r0tl01kq 1031 19 liver liver NN cord-010027-r0tl01kq 1031 20 and and CC cord-010027-r0tl01kq 1031 21 lung lung NN cord-010027-r0tl01kq 1031 22 were be VBD cord-010027-r0tl01kq 1031 23 affected affect VBN cord-010027-r0tl01kq 1031 24 ( ( -LRB- cord-010027-r0tl01kq 1031 25 n=1 n=1 JJ cord-010027-r0tl01kq 1031 26 ) ) -RRB- cord-010027-r0tl01kq 1031 27 . . . cord-010027-r0tl01kq 1032 1 Immunohistochemistry Immunohistochemistry NNP cord-010027-r0tl01kq 1032 2 and/or and/or CC cord-010027-r0tl01kq 1032 3 histochemistry histochemistry NNP cord-010027-r0tl01kq 1032 4 was be VBD cord-010027-r0tl01kq 1032 5 invaluable invaluable JJ cord-010027-r0tl01kq 1032 6 in in IN cord-010027-r0tl01kq 1032 7 making make VBG cord-010027-r0tl01kq 1032 8 the the DT cord-010027-r0tl01kq 1032 9 diagnoses diagnosis NNS cord-010027-r0tl01kq 1032 10 and and CC cord-010027-r0tl01kq 1032 11 was be VBD cord-010027-r0tl01kq 1032 12 used use VBN cord-010027-r0tl01kq 1032 13 in in IN cord-010027-r0tl01kq 1032 14 all all DT cord-010027-r0tl01kq 1032 15 9 9 CD cord-010027-r0tl01kq 1032 16 cases case NNS cord-010027-r0tl01kq 1032 17 ( ( -LRB- cord-010027-r0tl01kq 1032 18 n=9 n=9 NN cord-010027-r0tl01kq 1032 19 ) ) -RRB- cord-010027-r0tl01kq 1032 20 . . . cord-010027-r0tl01kq 1033 1 Treatments treatment NNS cord-010027-r0tl01kq 1033 2 leading lead VBG cord-010027-r0tl01kq 1033 3 to to IN cord-010027-r0tl01kq 1033 4 immunosuppression immunosuppression NN cord-010027-r0tl01kq 1033 5 included include VBD cord-010027-r0tl01kq 1033 6 chemotherapeutic chemotherapeutic JJ cord-010027-r0tl01kq 1033 7 agents agent NNS cord-010027-r0tl01kq 1033 8 , , , cord-010027-r0tl01kq 1033 9 monoclonal monoclonal JJ cord-010027-r0tl01kq 1033 10 antibodies antibody NNS cord-010027-r0tl01kq 1033 11 , , , cord-010027-r0tl01kq 1033 12 steroids steroid NNS cord-010027-r0tl01kq 1033 13 and and CC cord-010027-r0tl01kq 1033 14 methotrexate methotrexate NNP cord-010027-r0tl01kq 1033 15 . . . cord-010027-r0tl01kq 1034 1 We -PRON- PRP cord-010027-r0tl01kq 1034 2 believe believe VBP cord-010027-r0tl01kq 1034 3 that that IN cord-010027-r0tl01kq 1034 4 with with IN cord-010027-r0tl01kq 1034 5 the the DT cord-010027-r0tl01kq 1034 6 ever ever RB cord-010027-r0tl01kq 1034 7 increasing increase VBG cord-010027-r0tl01kq 1034 8 use use NN cord-010027-r0tl01kq 1034 9 of of IN cord-010027-r0tl01kq 1034 10 immunosuppressive immunosuppressive JJ cord-010027-r0tl01kq 1034 11 therapies therapy NNS cord-010027-r0tl01kq 1034 12 ( ( -LRB- cord-010027-r0tl01kq 1034 13 both both DT cord-010027-r0tl01kq 1034 14 new new JJ cord-010027-r0tl01kq 1034 15 and and CC cord-010027-r0tl01kq 1034 16 old old JJ cord-010027-r0tl01kq 1034 17 ) ) -RRB- cord-010027-r0tl01kq 1034 18 for for IN cord-010027-r0tl01kq 1034 19 a a DT cord-010027-r0tl01kq 1034 20 wider wide JJR cord-010027-r0tl01kq 1034 21 number number NN cord-010027-r0tl01kq 1034 22 of of IN cord-010027-r0tl01kq 1034 23 disorders disorder NNS cord-010027-r0tl01kq 1034 24 , , , cord-010027-r0tl01kq 1034 25 vigilance vigilance NN cord-010027-r0tl01kq 1034 26 should should MD cord-010027-r0tl01kq 1034 27 be be VB cord-010027-r0tl01kq 1034 28 paid pay VBN cord-010027-r0tl01kq 1034 29 to to IN cord-010027-r0tl01kq 1034 30 their -PRON- PRP$ cord-010027-r0tl01kq 1034 31 potential potential NN cord-010027-r0tl01kq 1034 32 to to TO cord-010027-r0tl01kq 1034 33 cause cause VB cord-010027-r0tl01kq 1034 34 life life NN cord-010027-r0tl01kq 1034 35 threatening threaten VBG cord-010027-r0tl01kq 1034 36 side side NN cord-010027-r0tl01kq 1034 37 effects effect NNS cord-010027-r0tl01kq 1034 38 . . . cord-010027-r0tl01kq 1035 1 Histopathologists histopathologist NNS cord-010027-r0tl01kq 1035 2 play play VBP cord-010027-r0tl01kq 1035 3 a a DT cord-010027-r0tl01kq 1035 4 pivotal pivotal JJ cord-010027-r0tl01kq 1035 5 role role NN cord-010027-r0tl01kq 1035 6 in in IN cord-010027-r0tl01kq 1035 7 the the DT cord-010027-r0tl01kq 1035 8 recognition recognition NN cord-010027-r0tl01kq 1035 9 of of IN cord-010027-r0tl01kq 1035 10 this this DT cord-010027-r0tl01kq 1035 11 risk risk NN cord-010027-r0tl01kq 1035 12 and and CC cord-010027-r0tl01kq 1035 13 in in IN cord-010027-r0tl01kq 1035 14 the the DT cord-010027-r0tl01kq 1035 15 diagnosis diagnosis NN cord-010027-r0tl01kq 1035 16 of of IN cord-010027-r0tl01kq 1035 17 these these DT cord-010027-r0tl01kq 1035 18 diseases disease NNS cord-010027-r0tl01kq 1035 19 . . . cord-010027-r0tl01kq 1036 1 Audit Audit NNP cord-010027-r0tl01kq 1036 2 of of IN cord-010027-r0tl01kq 1036 3 Hospital Hospital NNP cord-010027-r0tl01kq 1036 4 - - HYPH cord-010027-r0tl01kq 1036 5 Based base VBN cord-010027-r0tl01kq 1036 6 Adult Adult NNP cord-010027-r0tl01kq 1036 7 Autopsy Autopsy NNP cord-010027-r0tl01kq 1036 8 Practice Practice NNP cord-010027-r0tl01kq 1036 9 in in IN cord-010027-r0tl01kq 1036 10 a a DT cord-010027-r0tl01kq 1036 11 University University NNP cord-010027-r0tl01kq 1036 12 Hospital Hospital NNP cord-010027-r0tl01kq 1036 13 from from IN cord-010027-r0tl01kq 1036 14 July July NNP cord-010027-r0tl01kq 1036 15 2013 2013 CD cord-010027-r0tl01kq 1036 16 - - SYM cord-010027-r0tl01kq 1036 17 2014 2014 CD cord-010027-r0tl01kq 1036 18 P p NN cord-010027-r0tl01kq 1036 19 D D NNP cord-010027-r0tl01kq 1036 20 Abu Abu NNP cord-010027-r0tl01kq 1036 21 - - HYPH cord-010027-r0tl01kq 1036 22 Sinn Sinn NNP cord-010027-r0tl01kq 1036 23 ; ; : cord-010027-r0tl01kq 1037 1 F F NNP cord-010027-r0tl01kq 1037 2 MacSweeney MacSweeney NNP cord-010027-r0tl01kq 1038 1 The the DT cord-010027-r0tl01kq 1038 2 contribution contribution NN cord-010027-r0tl01kq 1038 3 of of IN cord-010027-r0tl01kq 1038 4 hospital hospital NN cord-010027-r0tl01kq 1038 5 - - HYPH cord-010027-r0tl01kq 1038 6 based base VBN cord-010027-r0tl01kq 1038 7 autopsy autopsy JJ cord-010027-r0tl01kq 1038 8 practice practice NN cord-010027-r0tl01kq 1038 9 to to IN cord-010027-r0tl01kq 1038 10 improvements improvement NNS cord-010027-r0tl01kq 1038 11 in in IN cord-010027-r0tl01kq 1038 12 patient patient JJ cord-010027-r0tl01kq 1038 13 care care NN cord-010027-r0tl01kq 1038 14 is be VBZ cord-010027-r0tl01kq 1038 15 substantial substantial JJ cord-010027-r0tl01kq 1038 16 ; ; : cord-010027-r0tl01kq 1038 17 however however RB cord-010027-r0tl01kq 1038 18 , , , cord-010027-r0tl01kq 1038 19 there there EX cord-010027-r0tl01kq 1038 20 remains remain VBZ cord-010027-r0tl01kq 1038 21 a a DT cord-010027-r0tl01kq 1038 22 void void NN cord-010027-r0tl01kq 1038 23 in in IN cord-010027-r0tl01kq 1038 24 the the DT cord-010027-r0tl01kq 1038 25 processes process NNS cord-010027-r0tl01kq 1038 26 of of IN cord-010027-r0tl01kq 1038 27 audit audit NN cord-010027-r0tl01kq 1038 28 and and CC cord-010027-r0tl01kq 1038 29 raising raise VBG cord-010027-r0tl01kq 1038 30 quality quality NN cord-010027-r0tl01kq 1038 31 of of IN cord-010027-r0tl01kq 1038 32 standards standard NNS cord-010027-r0tl01kq 1038 33 in in IN cord-010027-r0tl01kq 1038 34 autopsy autopsy JJ cord-010027-r0tl01kq 1038 35 services service NNS cord-010027-r0tl01kq 1038 36 . . . cord-010027-r0tl01kq 1039 1 We -PRON- PRP cord-010027-r0tl01kq 1039 2 aim aim VBP cord-010027-r0tl01kq 1039 3 to to TO cord-010027-r0tl01kq 1039 4 assess assess VB cord-010027-r0tl01kq 1039 5 the the DT cord-010027-r0tl01kq 1039 6 current current JJ cord-010027-r0tl01kq 1039 7 autopsy autopsy JJ cord-010027-r0tl01kq 1039 8 practice practice NN cord-010027-r0tl01kq 1039 9 compared compare VBN cord-010027-r0tl01kq 1039 10 to to IN cord-010027-r0tl01kq 1039 11 RCPath RCPath NNP cord-010027-r0tl01kq 1039 12 guidelines guideline NNS cord-010027-r0tl01kq 1039 13 and and CC cord-010027-r0tl01kq 1039 14 identify identify VB cord-010027-r0tl01kq 1039 15 areas area NNS cord-010027-r0tl01kq 1039 16 for for IN cord-010027-r0tl01kq 1039 17 achieving achieve VBG cord-010027-r0tl01kq 1039 18 a a DT cord-010027-r0tl01kq 1039 19 high high JJ cord-010027-r0tl01kq 1039 20 quality quality NN cord-010027-r0tl01kq 1039 21 autopsy autopsy JJ cord-010027-r0tl01kq 1039 22 service service NN cord-010027-r0tl01kq 1039 23 . . . cord-010027-r0tl01kq 1040 1 All all DT cord-010027-r0tl01kq 1040 2 adult adult NN cord-010027-r0tl01kq 1040 3 autopsy autopsy JJ cord-010027-r0tl01kq 1040 4 cases case NNS cord-010027-r0tl01kq 1040 5 performed perform VBN cord-010027-r0tl01kq 1040 6 at at IN cord-010027-r0tl01kq 1040 7 a a DT cord-010027-r0tl01kq 1040 8 university university NN cord-010027-r0tl01kq 1040 9 hospital hospital NN cord-010027-r0tl01kq 1040 10 mortuary mortuary NN cord-010027-r0tl01kq 1040 11 between between IN cord-010027-r0tl01kq 1040 12 July July NNP cord-010027-r0tl01kq 1040 13 2013 2013 CD cord-010027-r0tl01kq 1040 14 and and CC cord-010027-r0tl01kq 1040 15 2014 2014 CD cord-010027-r0tl01kq 1040 16 were be VBD cord-010027-r0tl01kq 1040 17 reviewed review VBN cord-010027-r0tl01kq 1040 18 . . . cord-010027-r0tl01kq 1041 1 A a DT cord-010027-r0tl01kq 1041 2 total total NN cord-010027-r0tl01kq 1041 3 of of IN cord-010027-r0tl01kq 1041 4 522 522 CD cord-010027-r0tl01kq 1041 5 adult adult NN cord-010027-r0tl01kq 1041 6 autopsies autopsy NNS cord-010027-r0tl01kq 1041 7 were be VBD cord-010027-r0tl01kq 1041 8 performed perform VBN cord-010027-r0tl01kq 1041 9 by by IN cord-010027-r0tl01kq 1041 10 5 5 CD cord-010027-r0tl01kq 1041 11 Consultant Consultant NNP cord-010027-r0tl01kq 1041 12 Histopathologists Histopathologists NNP cord-010027-r0tl01kq 1041 13 . . . cord-010027-r0tl01kq 1042 1 Ninety ninety CD cord-010027-r0tl01kq 1042 2 nine nine CD cord-010027-r0tl01kq 1042 3 percent percent NN cord-010027-r0tl01kq 1042 4 were be VBD cord-010027-r0tl01kq 1042 5 Coroners coroner NNS cord-010027-r0tl01kq 1042 6 ' ' POS cord-010027-r0tl01kq 1042 7 cases case NNS cord-010027-r0tl01kq 1042 8 . . . cord-010027-r0tl01kq 1043 1 The the DT cord-010027-r0tl01kq 1043 2 median median JJ cord-010027-r0tl01kq 1043 3 turnaround turnaround NN cord-010027-r0tl01kq 1043 4 time time NN cord-010027-r0tl01kq 1043 5 was be VBD cord-010027-r0tl01kq 1043 6 38.5 38.5 CD cord-010027-r0tl01kq 1043 7 days day NNS cord-010027-r0tl01kq 1043 8 , , , cord-010027-r0tl01kq 1043 9 with with IN cord-010027-r0tl01kq 1043 10 a a DT cord-010027-r0tl01kq 1043 11 range range NN cord-010027-r0tl01kq 1043 12 of of IN cord-010027-r0tl01kq 1043 13 3 3 CD cord-010027-r0tl01kq 1043 14 - - SYM cord-010027-r0tl01kq 1043 15 123 123 CD cord-010027-r0tl01kq 1043 16 days day NNS cord-010027-r0tl01kq 1043 17 , , , cord-010027-r0tl01kq 1043 18 excluding exclude VBG cord-010027-r0tl01kq 1043 19 31 31 CD cord-010027-r0tl01kq 1043 20 outlier outlier JJ cord-010027-r0tl01kq 1043 21 cases case NNS cord-010027-r0tl01kq 1043 22 ( ( -LRB- cord-010027-r0tl01kq 1043 23 complex complex JJ cord-010027-r0tl01kq 1043 24 timeconsuming timeconsuming JJ cord-010027-r0tl01kq 1043 25 cases case NNS cord-010027-r0tl01kq 1043 26 ) ) -RRB- cord-010027-r0tl01kq 1043 27 . . . cord-010027-r0tl01kq 1044 1 There there EX cord-010027-r0tl01kq 1044 2 was be VBD cord-010027-r0tl01kq 1044 3 considerable considerable JJ cord-010027-r0tl01kq 1044 4 variation variation NN cord-010027-r0tl01kq 1044 5 in in IN cord-010027-r0tl01kq 1044 6 turnaround turnaround NN cord-010027-r0tl01kq 1044 7 times time NNS cord-010027-r0tl01kq 1044 8 in in IN cord-010027-r0tl01kq 1044 9 complex complex JJ cord-010027-r0tl01kq 1044 10 cases case NNS cord-010027-r0tl01kq 1044 11 and and CC cord-010027-r0tl01kq 1044 12 between between IN cord-010027-r0tl01kq 1044 13 the the DT cord-010027-r0tl01kq 1044 14 various various JJ cord-010027-r0tl01kq 1044 15 reporting reporting NN cord-010027-r0tl01kq 1044 16 pathologists pathologist NNS cord-010027-r0tl01kq 1044 17 . . . cord-010027-r0tl01kq 1045 1 Eighty eighty CD cord-010027-r0tl01kq 1045 2 five five CD cord-010027-r0tl01kq 1045 3 percent percent NN cord-010027-r0tl01kq 1045 4 of of IN cord-010027-r0tl01kq 1045 5 cases case NNS cord-010027-r0tl01kq 1045 6 were be VBD cord-010027-r0tl01kq 1045 7 compliant compliant JJ cord-010027-r0tl01kq 1045 8 with with IN cord-010027-r0tl01kq 1045 9 RCPath RCPath NNP cord-010027-r0tl01kq 1045 10 Minimum Minimum NNP cord-010027-r0tl01kq 1045 11 Dataset Dataset NNP cord-010027-r0tl01kq 1045 12 for for IN cord-010027-r0tl01kq 1045 13 Autopsy Autopsy NNP cord-010027-r0tl01kq 1045 14 Practice Practice NNP cord-010027-r0tl01kq 1045 15 . . . cord-010027-r0tl01kq 1046 1 The the DT cord-010027-r0tl01kq 1046 2 remainder remainder NN cord-010027-r0tl01kq 1046 3 were be VBD cord-010027-r0tl01kq 1046 4 lacking lack VBG cord-010027-r0tl01kq 1046 5 clinical clinical JJ cord-010027-r0tl01kq 1046 6 information information NN cord-010027-r0tl01kq 1046 7 only only RB cord-010027-r0tl01kq 1046 8 . . . cord-010027-r0tl01kq 1047 1 Histology histology NN cord-010027-r0tl01kq 1047 2 and and CC cord-010027-r0tl01kq 1047 3 toxicology toxicology NN cord-010027-r0tl01kq 1047 4 contributed contribute VBD cord-010027-r0tl01kq 1047 5 to to TO cord-010027-r0tl01kq 1047 6 cause cause VB cord-010027-r0tl01kq 1047 7 of of IN cord-010027-r0tl01kq 1047 8 death death NN cord-010027-r0tl01kq 1047 9 in in IN cord-010027-r0tl01kq 1047 10 34.4 34.4 CD cord-010027-r0tl01kq 1047 11 % % NN cord-010027-r0tl01kq 1047 12 and and CC cord-010027-r0tl01kq 1047 13 14.8 14.8 CD cord-010027-r0tl01kq 1047 14 % % NN cord-010027-r0tl01kq 1047 15 respectively respectively RB cord-010027-r0tl01kq 1047 16 . . . cord-010027-r0tl01kq 1048 1 No no DT cord-010027-r0tl01kq 1048 2 organs organ NNS cord-010027-r0tl01kq 1048 3 were be VBD cord-010027-r0tl01kq 1048 4 retained retain VBN cord-010027-r0tl01kq 1048 5 . . . cord-010027-r0tl01kq 1049 1 Further further JJ cord-010027-r0tl01kq 1049 2 review review NN cord-010027-r0tl01kq 1049 3 of of IN cord-010027-r0tl01kq 1049 4 the the DT cord-010027-r0tl01kq 1049 5 cases case NNS cord-010027-r0tl01kq 1049 6 not not RB cord-010027-r0tl01kq 1049 7 compliant compliant JJ cord-010027-r0tl01kq 1049 8 with with IN cord-010027-r0tl01kq 1049 9 RCPath RCPath NNP cord-010027-r0tl01kq 1049 10 guidelines guideline NNS cord-010027-r0tl01kq 1049 11 ( ( -LRB- cord-010027-r0tl01kq 1049 12 15 15 CD cord-010027-r0tl01kq 1049 13 % % NN cord-010027-r0tl01kq 1049 14 ) ) -RRB- cord-010027-r0tl01kq 1049 15 , , , cord-010027-r0tl01kq 1049 16 identified identify VBD cord-010027-r0tl01kq 1049 17 that that IN cord-010027-r0tl01kq 1049 18 the the DT cord-010027-r0tl01kq 1049 19 possible possible JJ cord-010027-r0tl01kq 1049 20 reasons reason NNS cord-010027-r0tl01kq 1049 21 were be VBD cord-010027-r0tl01kq 1049 22 the the DT cord-010027-r0tl01kq 1049 23 inaccuracy inaccuracy NN cord-010027-r0tl01kq 1049 24 , , , cord-010027-r0tl01kq 1049 25 and and CC cord-010027-r0tl01kq 1049 26 sometimes sometimes RB cord-010027-r0tl01kq 1049 27 irrelevance irrelevance NN cord-010027-r0tl01kq 1049 28 to to IN cord-010027-r0tl01kq 1049 29 the the DT cord-010027-r0tl01kq 1049 30 cause cause NN cord-010027-r0tl01kq 1049 31 of of IN cord-010027-r0tl01kq 1049 32 death death NN cord-010027-r0tl01kq 1049 33 , , , cord-010027-r0tl01kq 1049 34 of of IN cord-010027-r0tl01kq 1049 35 the the DT cord-010027-r0tl01kq 1049 36 information information NN cord-010027-r0tl01kq 1049 37 received receive VBN cord-010027-r0tl01kq 1049 38 by by IN cord-010027-r0tl01kq 1049 39 the the DT cord-010027-r0tl01kq 1049 40 pathologists pathologist NNS cord-010027-r0tl01kq 1049 41 . . . cord-010027-r0tl01kq 1050 1 In in IN cord-010027-r0tl01kq 1050 2 many many JJ cord-010027-r0tl01kq 1050 3 instances instance NNS cord-010027-r0tl01kq 1050 4 , , , cord-010027-r0tl01kq 1050 5 the the DT cord-010027-r0tl01kq 1050 6 clinical clinical JJ cord-010027-r0tl01kq 1050 7 information information NN cord-010027-r0tl01kq 1050 8 given give VBN cord-010027-r0tl01kq 1050 9 to to IN cord-010027-r0tl01kq 1050 10 the the DT cord-010027-r0tl01kq 1050 11 pathologist pathologist NN cord-010027-r0tl01kq 1050 12 may may MD cord-010027-r0tl01kq 1050 13 be be VB cord-010027-r0tl01kq 1050 14 controversial controversial JJ cord-010027-r0tl01kq 1050 15 , , , cord-010027-r0tl01kq 1050 16 and and CC cord-010027-r0tl01kq 1050 17 a a DT cord-010027-r0tl01kq 1050 18 certain certain JJ cord-010027-r0tl01kq 1050 19 degree degree NN cord-010027-r0tl01kq 1050 20 of of IN cord-010027-r0tl01kq 1050 21 caution caution NN cord-010027-r0tl01kq 1050 22 needs need VBZ cord-010027-r0tl01kq 1050 23 to to TO cord-010027-r0tl01kq 1050 24 be be VB cord-010027-r0tl01kq 1050 25 implemented implement VBN cord-010027-r0tl01kq 1050 26 to to TO cord-010027-r0tl01kq 1050 27 avoid avoid VB cord-010027-r0tl01kq 1050 28 including include VBG cord-010027-r0tl01kq 1050 29 misleading mislead VBG cord-010027-r0tl01kq 1050 30 information information NN cord-010027-r0tl01kq 1050 31 in in IN cord-010027-r0tl01kq 1050 32 the the DT cord-010027-r0tl01kq 1050 33 autopsy autopsy JJ cord-010027-r0tl01kq 1050 34 report report NN cord-010027-r0tl01kq 1050 35 . . . cord-010027-r0tl01kq 1051 1 The the DT cord-010027-r0tl01kq 1051 2 turnaround turnaround NN cord-010027-r0tl01kq 1051 3 times time NNS cord-010027-r0tl01kq 1051 4 could could MD cord-010027-r0tl01kq 1051 5 be be VB cord-010027-r0tl01kq 1051 6 improved improve VBN cord-010027-r0tl01kq 1051 7 if if IN cord-010027-r0tl01kq 1051 8 a a DT cord-010027-r0tl01kq 1051 9 preliminary preliminary JJ cord-010027-r0tl01kq 1051 10 report report NN cord-010027-r0tl01kq 1051 11 is be VBZ cord-010027-r0tl01kq 1051 12 issued issue VBN cord-010027-r0tl01kq 1051 13 within within IN cord-010027-r0tl01kq 1051 14 a a DT cord-010027-r0tl01kq 1051 15 set set VBN cord-010027-r0tl01kq 1051 16 time time NN cord-010027-r0tl01kq 1051 17 frame frame NN cord-010027-r0tl01kq 1051 18 , , , cord-010027-r0tl01kq 1051 19 to to TO cord-010027-r0tl01kq 1051 20 be be VB cord-010027-r0tl01kq 1051 21 followed follow VBN cord-010027-r0tl01kq 1051 22 by by IN cord-010027-r0tl01kq 1051 23 the the DT cord-010027-r0tl01kq 1051 24 complete complete JJ cord-010027-r0tl01kq 1051 25 report report NN cord-010027-r0tl01kq 1051 26 when when WRB cord-010027-r0tl01kq 1051 27 the the DT cord-010027-r0tl01kq 1051 28 histology histology NN cord-010027-r0tl01kq 1051 29 and and CC cord-010027-r0tl01kq 1051 30 toxicology toxicology NN cord-010027-r0tl01kq 1051 31 results result NNS cord-010027-r0tl01kq 1051 32 are be VBP cord-010027-r0tl01kq 1051 33 available available JJ cord-010027-r0tl01kq 1051 34 . . . cord-010027-r0tl01kq 1052 1 However however RB cord-010027-r0tl01kq 1052 2 , , , cord-010027-r0tl01kq 1052 3 this this DT cord-010027-r0tl01kq 1052 4 practice practice NN cord-010027-r0tl01kq 1052 5 is be VBZ cord-010027-r0tl01kq 1052 6 not not RB cord-010027-r0tl01kq 1052 7 acceptable acceptable JJ cord-010027-r0tl01kq 1052 8 to to IN cord-010027-r0tl01kq 1052 9 some some DT cord-010027-r0tl01kq 1052 10 coroners coroner NNS cord-010027-r0tl01kq 1052 11 who who WP cord-010027-r0tl01kq 1052 12 prefer prefer VBP cord-010027-r0tl01kq 1052 13 one one CD cord-010027-r0tl01kq 1052 14 complete complete JJ cord-010027-r0tl01kq 1052 15 final final JJ cord-010027-r0tl01kq 1052 16 report report NN cord-010027-r0tl01kq 1052 17 . . . cord-010027-r0tl01kq 1053 1 Variations variation NNS cord-010027-r0tl01kq 1053 2 in in IN cord-010027-r0tl01kq 1053 3 autopsy autopsy JJ cord-010027-r0tl01kq 1053 4 practice practice NN cord-010027-r0tl01kq 1053 5 are be VBP cord-010027-r0tl01kq 1053 6 to to TO cord-010027-r0tl01kq 1053 7 be be VB cord-010027-r0tl01kq 1053 8 expected expect VBN cord-010027-r0tl01kq 1053 9 as as IN cord-010027-r0tl01kq 1053 10 each each DT cord-010027-r0tl01kq 1053 11 autopsy autopsy JJ cord-010027-r0tl01kq 1053 12 involves involve VBZ cord-010027-r0tl01kq 1053 13 substantial substantial JJ cord-010027-r0tl01kq 1053 14 case case NN cord-010027-r0tl01kq 1053 15 - - HYPH cord-010027-r0tl01kq 1053 16 specific specific JJ cord-010027-r0tl01kq 1053 17 information information NN cord-010027-r0tl01kq 1053 18 to to IN cord-010027-r0tl01kq 1053 19 which which WDT cord-010027-r0tl01kq 1053 20 a a DT cord-010027-r0tl01kq 1053 21 case case NN cord-010027-r0tl01kq 1053 22 - - HYPH cord-010027-r0tl01kq 1053 23 specific specific JJ cord-010027-r0tl01kq 1053 24 answer answer NN cord-010027-r0tl01kq 1053 25 to to IN cord-010027-r0tl01kq 1053 26 the the DT cord-010027-r0tl01kq 1053 27 cause cause NN cord-010027-r0tl01kq 1053 28 of of IN cord-010027-r0tl01kq 1053 29 death death NN cord-010027-r0tl01kq 1053 30 is be VBZ cord-010027-r0tl01kq 1053 31 expected expect VBN cord-010027-r0tl01kq 1053 32 . . . cord-010027-r0tl01kq 1054 1 Prostate prostate NN cord-010027-r0tl01kq 1054 2 cancer cancer NN cord-010027-r0tl01kq 1054 3 is be VBZ cord-010027-r0tl01kq 1054 4 the the DT cord-010027-r0tl01kq 1054 5 second second JJ cord-010027-r0tl01kq 1054 6 most most RBS cord-010027-r0tl01kq 1054 7 common common JJ cord-010027-r0tl01kq 1054 8 form form NN cord-010027-r0tl01kq 1054 9 of of IN cord-010027-r0tl01kq 1054 10 cancer cancer NN cord-010027-r0tl01kq 1054 11 in in IN cord-010027-r0tl01kq 1054 12 males male NNS cord-010027-r0tl01kq 1054 13 , , , cord-010027-r0tl01kq 1054 14 and and CC cord-010027-r0tl01kq 1054 15 the the DT cord-010027-r0tl01kq 1054 16 incidence incidence NN cord-010027-r0tl01kq 1054 17 of of IN cord-010027-r0tl01kq 1054 18 this this DT cord-010027-r0tl01kq 1054 19 disease disease NN cord-010027-r0tl01kq 1054 20 is be VBZ cord-010027-r0tl01kq 1054 21 predicted predict VBN cord-010027-r0tl01kq 1054 22 to to TO cord-010027-r0tl01kq 1054 23 double double VB cord-010027-r0tl01kq 1054 24 globally globally RB cord-010027-r0tl01kq 1054 25 by by IN cord-010027-r0tl01kq 1054 26 2030 2030 CD cord-010027-r0tl01kq 1054 27 . . . cord-010027-r0tl01kq 1055 1 More More JJR cord-010027-r0tl01kq 1055 2 than than IN cord-010027-r0tl01kq 1055 3 1.1 1.1 CD cord-010027-r0tl01kq 1055 4 million million CD cord-010027-r0tl01kq 1055 5 new new JJ cord-010027-r0tl01kq 1055 6 cases case NNS cord-010027-r0tl01kq 1055 7 of of IN cord-010027-r0tl01kq 1055 8 prostate prostate NN cord-010027-r0tl01kq 1055 9 cancer cancer NN cord-010027-r0tl01kq 1055 10 are be VBP cord-010027-r0tl01kq 1055 11 diagnosed diagnose VBN cord-010027-r0tl01kq 1055 12 each each DT cord-010027-r0tl01kq 1055 13 year year NN cord-010027-r0tl01kq 1055 14 and and CC cord-010027-r0tl01kq 1056 1 two two CD cord-010027-r0tl01kq 1056 2 thirds third NNS cord-010027-r0tl01kq 1056 3 of of IN cord-010027-r0tl01kq 1056 4 these these DT cord-010027-r0tl01kq 1056 5 patients patient NNS cord-010027-r0tl01kq 1056 6 are be VBP cord-010027-r0tl01kq 1056 7 from from IN cord-010027-r0tl01kq 1056 8 the the DT cord-010027-r0tl01kq 1056 9 Western western JJ cord-010027-r0tl01kq 1056 10 world world NN cord-010027-r0tl01kq 1056 11 . . . cord-010027-r0tl01kq 1057 1 The the DT cord-010027-r0tl01kq 1057 2 current current JJ cord-010027-r0tl01kq 1057 3 PSA PSA NNP cord-010027-r0tl01kq 1057 4 - - HYPH cord-010027-r0tl01kq 1057 5 based base VBN cord-010027-r0tl01kq 1057 6 test test NN cord-010027-r0tl01kq 1057 7 for for IN cord-010027-r0tl01kq 1057 8 the the DT cord-010027-r0tl01kq 1057 9 diagnosis diagnosis NN cord-010027-r0tl01kq 1057 10 of of IN cord-010027-r0tl01kq 1057 11 prostate prostate NN cord-010027-r0tl01kq 1057 12 cancer cancer NN cord-010027-r0tl01kq 1057 13 lacks lack VBZ cord-010027-r0tl01kq 1057 14 specificity specificity NN cord-010027-r0tl01kq 1057 15 , , , cord-010027-r0tl01kq 1057 16 results result NNS cord-010027-r0tl01kq 1057 17 in in IN cord-010027-r0tl01kq 1057 18 missed miss VBN cord-010027-r0tl01kq 1057 19 - - HYPH cord-010027-r0tl01kq 1057 20 diagnoses diagnosis NNS cord-010027-r0tl01kq 1057 21 , , , cord-010027-r0tl01kq 1057 22 over over IN cord-010027-r0tl01kq 1057 23 - - HYPH cord-010027-r0tl01kq 1057 24 diagnosis diagnosis NN cord-010027-r0tl01kq 1057 25 and and CC cord-010027-r0tl01kq 1057 26 unnecessary unnecessary JJ cord-010027-r0tl01kq 1057 27 biopsies biopsy NNS cord-010027-r0tl01kq 1057 28 / / SYM cord-010027-r0tl01kq 1057 29 treatment treatment NN cord-010027-r0tl01kq 1057 30 . . . cord-010027-r0tl01kq 1058 1 There there EX cord-010027-r0tl01kq 1058 2 is be VBZ cord-010027-r0tl01kq 1058 3 an an DT cord-010027-r0tl01kq 1058 4 urgent urgent JJ cord-010027-r0tl01kq 1058 5 need need NN cord-010027-r0tl01kq 1058 6 for for IN cord-010027-r0tl01kq 1058 7 a a DT cord-010027-r0tl01kq 1058 8 method method NN cord-010027-r0tl01kq 1058 9 that that WDT cord-010027-r0tl01kq 1058 10 enables enable VBZ cord-010027-r0tl01kq 1058 11 early early JJ cord-010027-r0tl01kq 1058 12 accurate accurate JJ cord-010027-r0tl01kq 1058 13 detection detection NN cord-010027-r0tl01kq 1058 14 of of IN cord-010027-r0tl01kq 1058 15 prostate prostate NN cord-010027-r0tl01kq 1058 16 cancer cancer NN cord-010027-r0tl01kq 1058 17 . . . cord-010027-r0tl01kq 1059 1 Endosomes Endosomes NNP cord-010027-r0tl01kq 1059 2 and and CC cord-010027-r0tl01kq 1059 3 lysosomes lysosome NNS cord-010027-r0tl01kq 1059 4 are be VBP cord-010027-r0tl01kq 1059 5 cellular cellular JJ cord-010027-r0tl01kq 1059 6 compartments compartment NNS cord-010027-r0tl01kq 1059 7 that that WDT cord-010027-r0tl01kq 1059 8 degrade degrade VBP cord-010027-r0tl01kq 1059 9 and and CC cord-010027-r0tl01kq 1059 10 turnover turnover NN cord-010027-r0tl01kq 1059 11 macromolecules macromolecule NNS cord-010027-r0tl01kq 1059 12 in in IN cord-010027-r0tl01kq 1059 13 order order NN cord-010027-r0tl01kq 1059 14 to to TO cord-010027-r0tl01kq 1059 15 maintain maintain VB cord-010027-r0tl01kq 1059 16 cellular cellular JJ cord-010027-r0tl01kq 1059 17 homeostasis homeostasis NN cord-010027-r0tl01kq 1059 18 . . . cord-010027-r0tl01kq 1060 1 These these DT cord-010027-r0tl01kq 1060 2 organelles organelle NNS cord-010027-r0tl01kq 1060 3 are be VBP cord-010027-r0tl01kq 1060 4 directly directly RB cord-010027-r0tl01kq 1060 5 involved involve VBN cord-010027-r0tl01kq 1060 6 in in IN cord-010027-r0tl01kq 1060 7 the the DT cord-010027-r0tl01kq 1060 8 critical critical JJ cord-010027-r0tl01kq 1060 9 processes process NNS cord-010027-r0tl01kq 1060 10 of of IN cord-010027-r0tl01kq 1060 11 energy energy NN cord-010027-r0tl01kq 1060 12 metabolism metabolism NN cord-010027-r0tl01kq 1060 13 , , , cord-010027-r0tl01kq 1060 14 cell cell NN cord-010027-r0tl01kq 1060 15 division division NN cord-010027-r0tl01kq 1060 16 , , , cord-010027-r0tl01kq 1060 17 and and CC cord-010027-r0tl01kq 1060 18 intracellular intracellular JJ cord-010027-r0tl01kq 1060 19 signalling signalling NN cord-010027-r0tl01kq 1060 20 , , , cord-010027-r0tl01kq 1060 21 which which WDT cord-010027-r0tl01kq 1060 22 are be VBP cord-010027-r0tl01kq 1060 23 all all DT cord-010027-r0tl01kq 1060 24 hallmarks hallmark NNS cord-010027-r0tl01kq 1060 25 of of IN cord-010027-r0tl01kq 1060 26 cancer cancer NN cord-010027-r0tl01kq 1060 27 pathogenesis pathogenesis NN cord-010027-r0tl01kq 1060 28 . . . cord-010027-r0tl01kq 1061 1 Endosomes endosome NNS cord-010027-r0tl01kq 1061 2 have have VBP cord-010027-r0tl01kq 1061 3 a a DT cord-010027-r0tl01kq 1061 4 critical critical JJ cord-010027-r0tl01kq 1061 5 role role NN cord-010027-r0tl01kq 1061 6 in in IN cord-010027-r0tl01kq 1061 7 controlling control VBG cord-010027-r0tl01kq 1061 8 the the DT cord-010027-r0tl01kq 1061 9 secretion secretion NN cord-010027-r0tl01kq 1061 10 of of IN cord-010027-r0tl01kq 1061 11 proteins protein NNS cord-010027-r0tl01kq 1061 12 into into IN cord-010027-r0tl01kq 1061 13 extracellular extracellular JJ cord-010027-r0tl01kq 1061 14 fluids fluid NNS cord-010027-r0tl01kq 1061 15 , , , cord-010027-r0tl01kq 1061 16 making make VBG cord-010027-r0tl01kq 1061 17 them -PRON- PRP cord-010027-r0tl01kq 1061 18 an an DT cord-010027-r0tl01kq 1061 19 ideal ideal JJ cord-010027-r0tl01kq 1061 20 system system NN cord-010027-r0tl01kq 1061 21 to to TO cord-010027-r0tl01kq 1061 22 identify identify VB cord-010027-r0tl01kq 1061 23 new new JJ cord-010027-r0tl01kq 1061 24 biomarkers biomarker NNS cord-010027-r0tl01kq 1061 25 that that WDT cord-010027-r0tl01kq 1061 26 are be VBP cord-010027-r0tl01kq 1061 27 released release VBN cord-010027-r0tl01kq 1061 28 from from IN cord-010027-r0tl01kq 1061 29 cancer cancer NN cord-010027-r0tl01kq 1061 30 cells cell NNS cord-010027-r0tl01kq 1061 31 . . . cord-010027-r0tl01kq 1062 1 We -PRON- PRP cord-010027-r0tl01kq 1062 2 have have VBP cord-010027-r0tl01kq 1062 3 discovered discover VBN cord-010027-r0tl01kq 1062 4 that that IN cord-010027-r0tl01kq 1062 5 endosome endosome NN cord-010027-r0tl01kq 1062 6 biogenesis biogenesis NN cord-010027-r0tl01kq 1062 7 ( ( -LRB- cord-010027-r0tl01kq 1062 8 formation formation NN cord-010027-r0tl01kq 1062 9 and and CC cord-010027-r0tl01kq 1062 10 function function NN cord-010027-r0tl01kq 1062 11 of of IN cord-010027-r0tl01kq 1062 12 endosomes endosome NNS cord-010027-r0tl01kq 1062 13 ) ) -RRB- cord-010027-r0tl01kq 1062 14 is be VBZ cord-010027-r0tl01kq 1062 15 altered alter VBN cord-010027-r0tl01kq 1062 16 in in IN cord-010027-r0tl01kq 1062 17 prostate prostate NN cord-010027-r0tl01kq 1062 18 cancer cancer NN cord-010027-r0tl01kq 1062 19 . . . cord-010027-r0tl01kq 1063 1 There there EX cord-010027-r0tl01kq 1063 2 were be VBD cord-010027-r0tl01kq 1063 3 significant significant JJ cord-010027-r0tl01kq 1063 4 changes change NNS cord-010027-r0tl01kq 1063 5 in in IN cord-010027-r0tl01kq 1063 6 the the DT cord-010027-r0tl01kq 1063 7 gene gene NN cord-010027-r0tl01kq 1063 8 and and CC cord-010027-r0tl01kq 1063 9 protein protein NN cord-010027-r0tl01kq 1063 10 expression expression NN cord-010027-r0tl01kq 1063 11 for for IN cord-010027-r0tl01kq 1063 12 19 19 CD cord-010027-r0tl01kq 1063 13 endosomal endosomal NNP cord-010027-r0tl01kq 1063 14 proteins protein NNS cord-010027-r0tl01kq 1063 15 and and CC cord-010027-r0tl01kq 1063 16 differential differential JJ cord-010027-r0tl01kq 1063 17 distribution distribution NN cord-010027-r0tl01kq 1063 18 of of IN cord-010027-r0tl01kq 1063 19 endosome endosome NN cord-010027-r0tl01kq 1063 20 subsets subset NNS cord-010027-r0tl01kq 1063 21 in in IN cord-010027-r0tl01kq 1063 22 prostate prostate NN cord-010027-r0tl01kq 1063 23 cancer cancer NN cord-010027-r0tl01kq 1063 24 cell cell NN cord-010027-r0tl01kq 1063 25 lines line NNS cord-010027-r0tl01kq 1063 26 . . . cord-010027-r0tl01kq 1064 1 There there EX cord-010027-r0tl01kq 1064 2 were be VBD cord-010027-r0tl01kq 1064 3 also also RB cord-010027-r0tl01kq 1064 4 changes change NNS cord-010027-r0tl01kq 1064 5 to to IN cord-010027-r0tl01kq 1064 6 the the DT cord-010027-r0tl01kq 1064 7 endosomal endosomal NNP cord-010027-r0tl01kq 1064 8 traffic traffic NN cord-010027-r0tl01kq 1064 9 and and CC cord-010027-r0tl01kq 1064 10 signalling signalling NN cord-010027-r0tl01kq 1064 11 of of IN cord-010027-r0tl01kq 1064 12 the the DT cord-010027-r0tl01kq 1064 13 transferrin transferrin NN cord-010027-r0tl01kq 1064 14 receptor receptor NN cord-010027-r0tl01kq 1064 15 in in IN cord-010027-r0tl01kq 1064 16 prostate prostate NN cord-010027-r0tl01kq 1064 17 cancer cancer NN cord-010027-r0tl01kq 1064 18 cells cell NNS cord-010027-r0tl01kq 1064 19 . . . cord-010027-r0tl01kq 1065 1 These these DT cord-010027-r0tl01kq 1065 2 fundamental fundamental JJ cord-010027-r0tl01kq 1065 3 changes change NNS cord-010027-r0tl01kq 1065 4 in in IN cord-010027-r0tl01kq 1065 5 the the DT cord-010027-r0tl01kq 1065 6 cell cell NN cord-010027-r0tl01kq 1065 7 biology biology NN cord-010027-r0tl01kq 1065 8 of of IN cord-010027-r0tl01kq 1065 9 prostate prostate NN cord-010027-r0tl01kq 1065 10 cancer cancer NN cord-010027-r0tl01kq 1065 11 have have VBP cord-010027-r0tl01kq 1065 12 allowed allow VBN cord-010027-r0tl01kq 1065 13 us -PRON- PRP cord-010027-r0tl01kq 1065 14 to to TO cord-010027-r0tl01kq 1065 15 identify identify VB cord-010027-r0tl01kq 1065 16 a a DT cord-010027-r0tl01kq 1065 17 specific specific JJ cord-010027-r0tl01kq 1065 18 set set NN cord-010027-r0tl01kq 1065 19 of of IN cord-010027-r0tl01kq 1065 20 endosomal endosomal JJ cord-010027-r0tl01kq 1065 21 proteins protein NNS cord-010027-r0tl01kq 1065 22 that that WDT cord-010027-r0tl01kq 1065 23 have have VBP cord-010027-r0tl01kq 1065 24 diagnostic diagnostic JJ cord-010027-r0tl01kq 1065 25 potential potential NN cord-010027-r0tl01kq 1065 26 . . . cord-010027-r0tl01kq 1066 1 We -PRON- PRP cord-010027-r0tl01kq 1066 2 are be VBP cord-010027-r0tl01kq 1066 3 developing develop VBG cord-010027-r0tl01kq 1066 4 ELISA ELISA NNP cord-010027-r0tl01kq 1066 5 's 's POS cord-010027-r0tl01kq 1066 6 to to TO cord-010027-r0tl01kq 1066 7 quantify quantify VB cord-010027-r0tl01kq 1066 8 these these DT cord-010027-r0tl01kq 1066 9 endosomal endosomal JJ cord-010027-r0tl01kq 1066 10 proteins protein NNS cord-010027-r0tl01kq 1066 11 in in IN cord-010027-r0tl01kq 1066 12 patient patient NN cord-010027-r0tl01kq 1066 13 samples sample NNS cord-010027-r0tl01kq 1066 14 and and CC cord-010027-r0tl01kq 1066 15 antibodies antibody NNS cord-010027-r0tl01kq 1066 16 for for IN cord-010027-r0tl01kq 1066 17 immune immune JJ cord-010027-r0tl01kq 1066 18 histology histology NN cord-010027-r0tl01kq 1066 19 applications application NNS cord-010027-r0tl01kq 1066 20 . . . cord-010027-r0tl01kq 1067 1 The the DT cord-010027-r0tl01kq 1067 2 objective objective NN cord-010027-r0tl01kq 1067 3 for for IN cord-010027-r0tl01kq 1067 4 this this DT cord-010027-r0tl01kq 1067 5 project project NN cord-010027-r0tl01kq 1067 6 is be VBZ cord-010027-r0tl01kq 1067 7 to to TO cord-010027-r0tl01kq 1067 8 develop develop VB cord-010027-r0tl01kq 1067 9 an an DT cord-010027-r0tl01kq 1067 10 effective effective JJ cord-010027-r0tl01kq 1067 11 method method NN cord-010027-r0tl01kq 1067 12 for for IN cord-010027-r0tl01kq 1067 13 the the DT cord-010027-r0tl01kq 1067 14 early early JJ cord-010027-r0tl01kq 1067 15 and and CC cord-010027-r0tl01kq 1067 16 specific specific JJ cord-010027-r0tl01kq 1067 17 diagnosis diagnosis NN cord-010027-r0tl01kq 1067 18 of of IN cord-010027-r0tl01kq 1067 19 prostate prostate NN cord-010027-r0tl01kq 1067 20 cancer cancer NN cord-010027-r0tl01kq 1067 21 , , , cord-010027-r0tl01kq 1067 22 which which WDT cord-010027-r0tl01kq 1067 23 is be VBZ cord-010027-r0tl01kq 1067 24 important important JJ cord-010027-r0tl01kq 1067 25 as as IN cord-010027-r0tl01kq 1067 26 this this DT cord-010027-r0tl01kq 1067 27 will will MD cord-010027-r0tl01kq 1067 28 have have VB cord-010027-r0tl01kq 1067 29 a a DT cord-010027-r0tl01kq 1067 30 major major JJ cord-010027-r0tl01kq 1067 31 impact impact NN cord-010027-r0tl01kq 1067 32 on on IN cord-010027-r0tl01kq 1067 33 patient patient JJ cord-010027-r0tl01kq 1067 34 outcome outcome NN cord-010027-r0tl01kq 1067 35 and and CC cord-010027-r0tl01kq 1067 36 survival survival NN cord-010027-r0tl01kq 1067 37 . . . cord-010027-r0tl01kq 1068 1 The the DT cord-010027-r0tl01kq 1068 2 incidence incidence NN cord-010027-r0tl01kq 1068 3 of of IN cord-010027-r0tl01kq 1068 4 malignant malignant JJ cord-010027-r0tl01kq 1068 5 melanoma melanoma NN cord-010027-r0tl01kq 1068 6 has have VBZ cord-010027-r0tl01kq 1068 7 rapidly rapidly RB cord-010027-r0tl01kq 1068 8 increased increase VBN cord-010027-r0tl01kq 1068 9 in in IN cord-010027-r0tl01kq 1068 10 recent recent JJ cord-010027-r0tl01kq 1068 11 times time NNS cord-010027-r0tl01kq 1068 12 and and CC cord-010027-r0tl01kq 1068 13 melanoma melanoma NN cord-010027-r0tl01kq 1068 14 currently currently RB cord-010027-r0tl01kq 1068 15 represents represent VBZ cord-010027-r0tl01kq 1068 16 the the DT cord-010027-r0tl01kq 1068 17 second second JJ cord-010027-r0tl01kq 1068 18 most most RBS cord-010027-r0tl01kq 1068 19 common common JJ cord-010027-r0tl01kq 1068 20 cancer cancer NN cord-010027-r0tl01kq 1068 21 diagnosed diagnose VBN cord-010027-r0tl01kq 1068 22 in in IN cord-010027-r0tl01kq 1068 23 young young JJ cord-010027-r0tl01kq 1068 24 adults adult NNS cord-010027-r0tl01kq 1068 25 . . . cord-010027-r0tl01kq 1069 1 Diagnosis diagnosis NN cord-010027-r0tl01kq 1069 2 is be VBZ cord-010027-r0tl01kq 1069 3 based base VBN cord-010027-r0tl01kq 1069 4 predominantly predominantly RB cord-010027-r0tl01kq 1069 5 on on IN cord-010027-r0tl01kq 1069 6 histological histological JJ cord-010027-r0tl01kq 1069 7 assessment assessment NN cord-010027-r0tl01kq 1069 8 ; ; : cord-010027-r0tl01kq 1069 9 however however RB cord-010027-r0tl01kq 1069 10 , , , cord-010027-r0tl01kq 1069 11 due due IN cord-010027-r0tl01kq 1069 12 to to IN cord-010027-r0tl01kq 1069 13 the the DT cord-010027-r0tl01kq 1069 14 wide wide JJ cord-010027-r0tl01kq 1069 15 spectrum spectrum NN cord-010027-r0tl01kq 1069 16 of of IN cord-010027-r0tl01kq 1069 17 morphological morphological JJ cord-010027-r0tl01kq 1069 18 characteristics characteristic NNS cord-010027-r0tl01kq 1069 19 and and CC cord-010027-r0tl01kq 1069 20 lack lack NN cord-010027-r0tl01kq 1069 21 of of IN cord-010027-r0tl01kq 1069 22 firm firm JJ cord-010027-r0tl01kq 1069 23 diagnostic diagnostic JJ cord-010027-r0tl01kq 1069 24 criteria criterion NNS cord-010027-r0tl01kq 1069 25 , , , cord-010027-r0tl01kq 1069 26 accurate accurate JJ cord-010027-r0tl01kq 1069 27 diagnosis diagnosis NN cord-010027-r0tl01kq 1069 28 can can MD cord-010027-r0tl01kq 1069 29 be be VB cord-010027-r0tl01kq 1069 30 challenging challenging JJ cord-010027-r0tl01kq 1069 31 . . . cord-010027-r0tl01kq 1070 1 Some some DT cord-010027-r0tl01kq 1070 2 atypical atypical JJ cord-010027-r0tl01kq 1070 3 melanocytic melanocytic JJ cord-010027-r0tl01kq 1070 4 lesions lesion NNS cord-010027-r0tl01kq 1070 5 do do VBP cord-010027-r0tl01kq 1070 6 not not RB cord-010027-r0tl01kq 1070 7 display display VB cord-010027-r0tl01kq 1070 8 clear clear RB cord-010027-r0tl01kq 1070 9 - - HYPH cord-010027-r0tl01kq 1070 10 cut cut VBN cord-010027-r0tl01kq 1070 11 morphological morphological JJ cord-010027-r0tl01kq 1070 12 features feature NNS cord-010027-r0tl01kq 1070 13 to to TO cord-010027-r0tl01kq 1070 14 allow allow VB cord-010027-r0tl01kq 1070 15 distinction distinction NN cord-010027-r0tl01kq 1070 16 of of IN cord-010027-r0tl01kq 1070 17 benign benign JJ cord-010027-r0tl01kq 1070 18 from from IN cord-010027-r0tl01kq 1070 19 malignant malignant JJ cord-010027-r0tl01kq 1070 20 tumours tumour NNS cord-010027-r0tl01kq 1070 21 , , , cord-010027-r0tl01kq 1070 22 making make VBG cord-010027-r0tl01kq 1070 23 diagnosis diagnosis NN cord-010027-r0tl01kq 1070 24 and and CC cord-010027-r0tl01kq 1070 25 treatment treatment NN cord-010027-r0tl01kq 1070 26 difficult difficult JJ cord-010027-r0tl01kq 1070 27 . . . cord-010027-r0tl01kq 1071 1 Among among IN cord-010027-r0tl01kq 1071 2 these these DT cord-010027-r0tl01kq 1071 3 atypical atypical JJ cord-010027-r0tl01kq 1071 4 melanocytic melanocytic JJ cord-010027-r0tl01kq 1071 5 lesions lesion NNS cord-010027-r0tl01kq 1071 6 blue blue JJ cord-010027-r0tl01kq 1071 7 nevi nevus NNS cord-010027-r0tl01kq 1071 8 , , , cord-010027-r0tl01kq 1071 9 Spitz Spitz NNP cord-010027-r0tl01kq 1071 10 nevi nevus NNS cord-010027-r0tl01kq 1071 11 and and CC cord-010027-r0tl01kq 1071 12 dysplastic dysplastic JJ cord-010027-r0tl01kq 1071 13 lesions lesion NNS cord-010027-r0tl01kq 1071 14 are be VBP cord-010027-r0tl01kq 1071 15 common common JJ cord-010027-r0tl01kq 1071 16 . . . cord-010027-r0tl01kq 1072 1 From from IN cord-010027-r0tl01kq 1072 2 histological histological JJ cord-010027-r0tl01kq 1072 3 features feature NNS cord-010027-r0tl01kq 1072 4 alone alone RB cord-010027-r0tl01kq 1072 5 , , , cord-010027-r0tl01kq 1072 6 it -PRON- PRP cord-010027-r0tl01kq 1072 7 can can MD cord-010027-r0tl01kq 1072 8 be be VB cord-010027-r0tl01kq 1072 9 difficult difficult JJ cord-010027-r0tl01kq 1072 10 to to TO cord-010027-r0tl01kq 1072 11 exclude exclude VB cord-010027-r0tl01kq 1072 12 a a DT cord-010027-r0tl01kq 1072 13 diagnosis diagnosis NN cord-010027-r0tl01kq 1072 14 of of IN cord-010027-r0tl01kq 1072 15 melanoma melanoma NN cord-010027-r0tl01kq 1072 16 and and CC cord-010027-r0tl01kq 1072 17 therefore therefore RB cord-010027-r0tl01kq 1072 18 aggressive aggressive JJ cord-010027-r0tl01kq 1072 19 surgical surgical JJ cord-010027-r0tl01kq 1072 20 strategies strategy NNS cord-010027-r0tl01kq 1072 21 may may MD cord-010027-r0tl01kq 1072 22 be be VB cord-010027-r0tl01kq 1072 23 employed employ VBN cord-010027-r0tl01kq 1072 24 in in IN cord-010027-r0tl01kq 1072 25 cases case NNS cord-010027-r0tl01kq 1072 26 were be VBD cord-010027-r0tl01kq 1072 27 they -PRON- PRP cord-010027-r0tl01kq 1072 28 are be VBP cord-010027-r0tl01kq 1072 29 unnecessary unnecessary JJ cord-010027-r0tl01kq 1072 30 , , , cord-010027-r0tl01kq 1072 31 highlighting highlight VBG cord-010027-r0tl01kq 1072 32 the the DT cord-010027-r0tl01kq 1072 33 need need NN cord-010027-r0tl01kq 1072 34 for for IN cord-010027-r0tl01kq 1072 35 improved improve VBN cord-010027-r0tl01kq 1072 36 diagnostic diagnostic JJ cord-010027-r0tl01kq 1072 37 techniques technique NNS cord-010027-r0tl01kq 1072 38 . . . cord-010027-r0tl01kq 1073 1 Both both DT cord-010027-r0tl01kq 1073 2 mRNA mRNA NNP cord-010027-r0tl01kq 1073 3 and and CC cord-010027-r0tl01kq 1073 4 miRNA miRNA NNP cord-010027-r0tl01kq 1073 5 profiling profiling NN cord-010027-r0tl01kq 1073 6 have have VBP cord-010027-r0tl01kq 1073 7 been be VBN cord-010027-r0tl01kq 1073 8 shown show VBN cord-010027-r0tl01kq 1073 9 to to TO cord-010027-r0tl01kq 1073 10 be be VB cord-010027-r0tl01kq 1073 11 able able JJ cord-010027-r0tl01kq 1073 12 to to TO cord-010027-r0tl01kq 1073 13 distinguish distinguish VB cord-010027-r0tl01kq 1073 14 benign benign JJ cord-010027-r0tl01kq 1073 15 nevi nevus NNS cord-010027-r0tl01kq 1073 16 and and CC cord-010027-r0tl01kq 1073 17 primary primary JJ cord-010027-r0tl01kq 1073 18 melanoma melanoma NN cord-010027-r0tl01kq 1073 19 tumours tumour NNS cord-010027-r0tl01kq 1073 20 . . . cord-010027-r0tl01kq 1074 1 Studying study VBG cord-010027-r0tl01kq 1074 2 miRNA miRNA NNP cord-010027-r0tl01kq 1074 3 expression expression NN cord-010027-r0tl01kq 1074 4 levels level NNS cord-010027-r0tl01kq 1074 5 is be VBZ cord-010027-r0tl01kq 1074 6 an an DT cord-010027-r0tl01kq 1074 7 attractive attractive JJ cord-010027-r0tl01kq 1074 8 strategy strategy NN cord-010027-r0tl01kq 1074 9 as as IN cord-010027-r0tl01kq 1074 10 miRNAs miRNAs NNP cord-010027-r0tl01kq 1074 11 are be VBP cord-010027-r0tl01kq 1074 12 highly highly RB cord-010027-r0tl01kq 1074 13 resistant resistant JJ cord-010027-r0tl01kq 1074 14 to to IN cord-010027-r0tl01kq 1074 15 degradation degradation NN cord-010027-r0tl01kq 1074 16 and and CC cord-010027-r0tl01kq 1074 17 can can MD cord-010027-r0tl01kq 1074 18 be be VB cord-010027-r0tl01kq 1074 19 easily easily RB cord-010027-r0tl01kq 1074 20 analysed analyse VBN cord-010027-r0tl01kq 1074 21 in in IN cord-010027-r0tl01kq 1074 22 FFPE FFPE NNP cord-010027-r0tl01kq 1074 23 samples sample NNS cord-010027-r0tl01kq 1074 24 . . . cord-010027-r0tl01kq 1075 1 We -PRON- PRP cord-010027-r0tl01kq 1075 2 have have VBP cord-010027-r0tl01kq 1075 3 studied study VBN cord-010027-r0tl01kq 1075 4 miRNA miRNA NNP cord-010027-r0tl01kq 1075 5 expression expression NN cord-010027-r0tl01kq 1075 6 levels level NNS cord-010027-r0tl01kq 1075 7 in in IN cord-010027-r0tl01kq 1075 8 a a DT cord-010027-r0tl01kq 1075 9 cohort cohort NN cord-010027-r0tl01kq 1075 10 of of IN cord-010027-r0tl01kq 1075 11 benign benign JJ cord-010027-r0tl01kq 1075 12 , , , cord-010027-r0tl01kq 1075 13 blue blue JJ cord-010027-r0tl01kq 1075 14 , , , cord-010027-r0tl01kq 1075 15 Spitz Spitz NNP cord-010027-r0tl01kq 1075 16 and and CC cord-010027-r0tl01kq 1075 17 dysplastic dysplastic JJ cord-010027-r0tl01kq 1075 18 nevi nevus NNS cord-010027-r0tl01kq 1075 19 versus versus IN cord-010027-r0tl01kq 1075 20 primary primary JJ cord-010027-r0tl01kq 1075 21 melanoma melanoma NN cord-010027-r0tl01kq 1075 22 tumours tumour NNS cord-010027-r0tl01kq 1075 23 and and CC cord-010027-r0tl01kq 1075 24 their -PRON- PRP$ cord-010027-r0tl01kq 1075 25 derived derive VBN cord-010027-r0tl01kq 1075 26 metastases metastasis NNS cord-010027-r0tl01kq 1075 27 . . . cord-010027-r0tl01kq 1076 1 Expression expression NN cord-010027-r0tl01kq 1076 2 levels level NNS cord-010027-r0tl01kq 1076 3 of of IN cord-010027-r0tl01kq 1076 4 key key JJ cord-010027-r0tl01kq 1076 5 melanoma melanoma NN cord-010027-r0tl01kq 1076 6 miRNAs miRNAs NNP cord-010027-r0tl01kq 1076 7 , , , cord-010027-r0tl01kq 1076 8 including include VBG cord-010027-r0tl01kq 1076 9 miRNA miRNA NNP cord-010027-r0tl01kq 1076 10 21 21 CD cord-010027-r0tl01kq 1076 11 , , , cord-010027-r0tl01kq 1076 12 miRNA miRNA NNP cord-010027-r0tl01kq 1076 13 211 211 CD cord-010027-r0tl01kq 1076 14 , , , cord-010027-r0tl01kq 1076 15 miRNA miRNA NNP cord-010027-r0tl01kq 1076 16 205 205 CD cord-010027-r0tl01kq 1077 1 and and CC cord-010027-r0tl01kq 1077 2 miRNA miRNA NNP cord-010027-r0tl01kq 1077 3 200c 200c NNP cord-010027-r0tl01kq 1077 4 can can MD cord-010027-r0tl01kq 1077 5 be be VB cord-010027-r0tl01kq 1077 6 used use VBN cord-010027-r0tl01kq 1077 7 to to TO cord-010027-r0tl01kq 1077 8 distinguish distinguish VB cord-010027-r0tl01kq 1077 9 between between IN cord-010027-r0tl01kq 1077 10 nevi nevus NNS cord-010027-r0tl01kq 1077 11 and and CC cord-010027-r0tl01kq 1077 12 malignant malignant JJ cord-010027-r0tl01kq 1077 13 melanomas melanoma NNS cord-010027-r0tl01kq 1077 14 . . . cord-010027-r0tl01kq 1078 1 We -PRON- PRP cord-010027-r0tl01kq 1078 2 propose propose VBP cord-010027-r0tl01kq 1078 3 an an DT cord-010027-r0tl01kq 1078 4 easy easy NN cord-010027-r0tl01kq 1078 5 to to TO cord-010027-r0tl01kq 1078 6 implement implement VB cord-010027-r0tl01kq 1078 7 , , , cord-010027-r0tl01kq 1078 8 simple simple JJ cord-010027-r0tl01kq 1078 9 and and CC cord-010027-r0tl01kq 1078 10 robust robust JJ cord-010027-r0tl01kq 1078 11 molecular molecular JJ cord-010027-r0tl01kq 1078 12 method method NN cord-010027-r0tl01kq 1078 13 based base VBN cord-010027-r0tl01kq 1078 14 on on IN cord-010027-r0tl01kq 1078 15 miRNA miRNA NNP cord-010027-r0tl01kq 1078 16 expression expression NN cord-010027-r0tl01kq 1078 17 ratio ratio NN cord-010027-r0tl01kq 1078 18 that that WDT cord-010027-r0tl01kq 1078 19 , , , cord-010027-r0tl01kq 1078 20 in in IN cord-010027-r0tl01kq 1078 21 combination combination NN cord-010027-r0tl01kq 1078 22 with with IN cord-010027-r0tl01kq 1078 23 histological histological JJ cord-010027-r0tl01kq 1078 24 assessment assessment NN cord-010027-r0tl01kq 1078 25 , , , cord-010027-r0tl01kq 1078 26 allows allow VBZ cord-010027-r0tl01kq 1078 27 diagnosis diagnosis NN cord-010027-r0tl01kq 1078 28 of of IN cord-010027-r0tl01kq 1078 29 difficult difficult JJ cord-010027-r0tl01kq 1078 30 to to TO cord-010027-r0tl01kq 1078 31 classify classify VB cord-010027-r0tl01kq 1078 32 atypical atypical JJ cord-010027-r0tl01kq 1078 33 melanocytic melanocytic JJ cord-010027-r0tl01kq 1078 34 lesions lesion NNS cord-010027-r0tl01kq 1078 35 . . . cord-010027-r0tl01kq 1079 1 Background background NN cord-010027-r0tl01kq 1079 2 : : : cord-010027-r0tl01kq 1080 1 Diagnosis diagnosis NN cord-010027-r0tl01kq 1080 2 of of IN cord-010027-r0tl01kq 1080 3 Lynch Lynch NNP cord-010027-r0tl01kq 1080 4 syndrome syndrome NN cord-010027-r0tl01kq 1080 5 ( ( -LRB- cord-010027-r0tl01kq 1080 6 LS LS NNP cord-010027-r0tl01kq 1080 7 ) ) -RRB- cord-010027-r0tl01kq 1080 8 traditionally traditionally RB cord-010027-r0tl01kq 1080 9 relies rely VBZ cord-010027-r0tl01kq 1080 10 on on IN cord-010027-r0tl01kq 1080 11 clinical clinical JJ cord-010027-r0tl01kq 1080 12 criteria criterion NNS cord-010027-r0tl01kq 1080 13 to to TO cord-010027-r0tl01kq 1080 14 guide guide VB cord-010027-r0tl01kq 1080 15 diagnostic diagnostic JJ cord-010027-r0tl01kq 1080 16 genetic genetic JJ cord-010027-r0tl01kq 1080 17 testing testing NN cord-010027-r0tl01kq 1080 18 . . . cord-010027-r0tl01kq 1081 1 MMR MMR NNP cord-010027-r0tl01kq 1081 2 status status NN cord-010027-r0tl01kq 1081 3 of of IN cord-010027-r0tl01kq 1081 4 the the DT cord-010027-r0tl01kq 1081 5 patient patient NN cord-010027-r0tl01kq 1081 6 's 's POS cord-010027-r0tl01kq 1081 7 tumour tumour NN cord-010027-r0tl01kq 1081 8 can can MD cord-010027-r0tl01kq 1081 9 help help VB cord-010027-r0tl01kq 1081 10 detect detect VB cord-010027-r0tl01kq 1081 11 Lynch Lynch NNP cord-010027-r0tl01kq 1081 12 syndrome syndrome NN cord-010027-r0tl01kq 1081 13 families family NNS cord-010027-r0tl01kq 1081 14 as as RB cord-010027-r0tl01kq 1081 15 well well RB cord-010027-r0tl01kq 1081 16 as as IN cord-010027-r0tl01kq 1081 17 having have VBG cord-010027-r0tl01kq 1081 18 other other JJ cord-010027-r0tl01kq 1081 19 recognised recognise VBN cord-010027-r0tl01kq 1081 20 applications application NNS cord-010027-r0tl01kq 1081 21 for for IN cord-010027-r0tl01kq 1081 22 the the DT cord-010027-r0tl01kq 1081 23 patient patient NN cord-010027-r0tl01kq 1081 24 's 's POS cord-010027-r0tl01kq 1081 25 management management NN cord-010027-r0tl01kq 1081 26 including include VBG cord-010027-r0tl01kq 1081 27 prognostic prognostic JJ cord-010027-r0tl01kq 1081 28 and and CC cord-010027-r0tl01kq 1081 29 predictive predictive JJ cord-010027-r0tl01kq 1081 30 significance significance NN cord-010027-r0tl01kq 1081 31 . . . cord-010027-r0tl01kq 1082 1 As as IN cord-010027-r0tl01kq 1082 2 such such JJ cord-010027-r0tl01kq 1082 3 , , , cord-010027-r0tl01kq 1082 4 the the DT cord-010027-r0tl01kq 1082 5 ' ' `` cord-010027-r0tl01kq 1082 6 Dataset Dataset NNP cord-010027-r0tl01kq 1082 7 for for IN cord-010027-r0tl01kq 1082 8 colorectal colorectal JJ cord-010027-r0tl01kq 1082 9 cancer cancer NN cord-010027-r0tl01kq 1082 10 histopathology histopathology NN cord-010027-r0tl01kq 1082 11 report report NN cord-010027-r0tl01kq 1082 12 ' ' POS cord-010027-r0tl01kq 1082 13 recommendations recommendation NNS cord-010027-r0tl01kq 1082 14 from from IN cord-010027-r0tl01kq 1082 15 the the DT cord-010027-r0tl01kq 1082 16 Royal Royal NNP cord-010027-r0tl01kq 1082 17 college college NN cord-010027-r0tl01kq 1082 18 of of IN cord-010027-r0tl01kq 1082 19 pathologists pathologist NNS cord-010027-r0tl01kq 1082 20 were be VBD cord-010027-r0tl01kq 1082 21 updated update VBN cord-010027-r0tl01kq 1082 22 in in IN cord-010027-r0tl01kq 1082 23 July July NNP cord-010027-r0tl01kq 1082 24 2014 2014 CD cord-010027-r0tl01kq 1082 25 to to TO cord-010027-r0tl01kq 1082 26 include include VB cord-010027-r0tl01kq 1082 27 screening screening NN cord-010027-r0tl01kq 1082 28 of of IN cord-010027-r0tl01kq 1082 29 colorectal colorectal JJ cord-010027-r0tl01kq 1082 30 cancer cancer NN cord-010027-r0tl01kq 1082 31 patients patient NNS cord-010027-r0tl01kq 1082 32 under under IN cord-010027-r0tl01kq 1082 33 the the DT cord-010027-r0tl01kq 1082 34 age age NN cord-010027-r0tl01kq 1082 35 of of IN cord-010027-r0tl01kq 1082 36 50 50 CD cord-010027-r0tl01kq 1082 37 and and CC cord-010027-r0tl01kq 1082 38 molecular molecular JJ cord-010027-r0tl01kq 1082 39 testing testing NN cord-010027-r0tl01kq 1082 40 for for IN cord-010027-r0tl01kq 1082 41 abnormalities abnormality NNS cord-010027-r0tl01kq 1082 42 in in IN cord-010027-r0tl01kq 1082 43 the the DT cord-010027-r0tl01kq 1082 44 mismatch mismatch NN cord-010027-r0tl01kq 1082 45 repair repair NN cord-010027-r0tl01kq 1082 46 genes gene NNS cord-010027-r0tl01kq 1082 47 . . . cord-010027-r0tl01kq 1083 1 In in IN cord-010027-r0tl01kq 1083 2 South South NNP cord-010027-r0tl01kq 1083 3 - - HYPH cord-010027-r0tl01kq 1083 4 East East NNP cord-010027-r0tl01kq 1083 5 of of IN cord-010027-r0tl01kq 1083 6 Scotland Scotland NNP cord-010027-r0tl01kq 1083 7 we -PRON- PRP cord-010027-r0tl01kq 1083 8 introduced introduce VBD cord-010027-r0tl01kq 1083 9 molecular molecular JJ cord-010027-r0tl01kq 1083 10 testing testing NN cord-010027-r0tl01kq 1083 11 to to TO cord-010027-r0tl01kq 1083 12 identify identify VB cord-010027-r0tl01kq 1083 13 individuals individual NNS cord-010027-r0tl01kq 1083 14 at at IN cord-010027-r0tl01kq 1083 15 risk risk NN cord-010027-r0tl01kq 1083 16 of of IN cord-010027-r0tl01kq 1083 17 LS LS NNP cord-010027-r0tl01kq 1083 18 . . . cord-010027-r0tl01kq 1084 1 To to TO cord-010027-r0tl01kq 1084 2 widen widen VB cord-010027-r0tl01kq 1084 3 our -PRON- PRP$ cord-010027-r0tl01kq 1084 4 screening screening NN cord-010027-r0tl01kq 1084 5 in in IN cord-010027-r0tl01kq 1084 6 line line NN cord-010027-r0tl01kq 1084 7 with with IN cord-010027-r0tl01kq 1084 8 revised revise VBN cord-010027-r0tl01kq 1084 9 guidelines guideline NNS cord-010027-r0tl01kq 1084 10 set set VBN cord-010027-r0tl01kq 1084 11 by by IN cord-010027-r0tl01kq 1084 12 European european JJ cord-010027-r0tl01kq 1084 13 experts expert NNS cord-010027-r0tl01kq 1084 14 , , , cord-010027-r0tl01kq 1084 15 we -PRON- PRP cord-010027-r0tl01kq 1084 16 expanded expand VBD cord-010027-r0tl01kq 1084 17 our -PRON- PRP$ cord-010027-r0tl01kq 1084 18 cohort cohort NN cord-010027-r0tl01kq 1084 19 criteria criterion NNS cord-010027-r0tl01kq 1084 20 to to TO cord-010027-r0tl01kq 1084 21 include include VB cord-010027-r0tl01kq 1084 22 those those DT cord-010027-r0tl01kq 1084 23 between between IN cord-010027-r0tl01kq 1084 24 the the DT cord-010027-r0tl01kq 1084 25 age age NN cord-010027-r0tl01kq 1084 26 of of IN cord-010027-r0tl01kq 1084 27 50 50 CD cord-010027-r0tl01kq 1084 28 and and CC cord-010027-r0tl01kq 1084 29 60 60 CD cord-010027-r0tl01kq 1084 30 . . . cord-010027-r0tl01kq 1085 1 Methods method NNS cord-010027-r0tl01kq 1085 2 : : : cord-010027-r0tl01kq 1086 1 Molecular molecular JJ cord-010027-r0tl01kq 1086 2 analysis analysis NN cord-010027-r0tl01kq 1086 3 was be VBD cord-010027-r0tl01kq 1086 4 carried carry VBN cord-010027-r0tl01kq 1086 5 out out RP cord-010027-r0tl01kq 1086 6 on on IN cord-010027-r0tl01kq 1086 7 553 553 CD cord-010027-r0tl01kq 1086 8 individuals individual NNS cord-010027-r0tl01kq 1086 9 : : : cord-010027-r0tl01kq 1086 10 446 446 CD cord-010027-r0tl01kq 1086 11 via via IN cord-010027-r0tl01kq 1086 12 ' ' `` cord-010027-r0tl01kq 1086 13 reflex reflex NN cord-010027-r0tl01kq 1086 14 testing testing NN cord-010027-r0tl01kq 1086 15 ' ' '' cord-010027-r0tl01kq 1086 16 ( ( -LRB- cord-010027-r0tl01kq 1086 17 newly newly RB cord-010027-r0tl01kq 1086 18 diagnosed diagnose VBN cord-010027-r0tl01kq 1086 19 colorectal colorectal JJ cord-010027-r0tl01kq 1086 20 carcinoma carcinoma NN cord-010027-r0tl01kq 1087 1 ≤60 ≤60 RB cord-010027-r0tl01kq 1088 1 yrs yr NNS cord-010027-r0tl01kq 1088 2 , , , cord-010027-r0tl01kq 1088 3 or or CC cord-010027-r0tl01kq 1088 4 clinical/ clinical/ CD cord-010027-r0tl01kq 1088 5 pathological pathological JJ cord-010027-r0tl01kq 1088 6 features feature NNS cord-010027-r0tl01kq 1088 7 associated associate VBN cord-010027-r0tl01kq 1088 8 with with IN cord-010027-r0tl01kq 1088 9 MMR MMR NNP cord-010027-r0tl01kq 1088 10 defects defect NNS cord-010027-r0tl01kq 1088 11 , , , cord-010027-r0tl01kq 1088 12 such such JJ cord-010027-r0tl01kq 1088 13 as as IN cord-010027-r0tl01kq 1088 14 pre pre JJ cord-010027-r0tl01kq 1088 15 - - JJ cord-010027-r0tl01kq 1088 16 menopausal menopausal JJ cord-010027-r0tl01kq 1088 17 endometrial endometrial JJ cord-010027-r0tl01kq 1088 18 carcinoma carcinoma NN cord-010027-r0tl01kq 1088 19 , , , cord-010027-r0tl01kq 1088 20 multiple multiple JJ cord-010027-r0tl01kq 1088 21 tumours tumour NNS cord-010027-r0tl01kq 1088 22 and and CC cord-010027-r0tl01kq 1088 23 medullary medullary JJ cord-010027-r0tl01kq 1088 24 - - HYPH cord-010027-r0tl01kq 1088 25 type type NN cord-010027-r0tl01kq 1088 26 carcinomas carcinoma NNS cord-010027-r0tl01kq 1088 27 ) ) -RRB- cord-010027-r0tl01kq 1088 28 and and CC cord-010027-r0tl01kq 1089 1 107 107 CD cord-010027-r0tl01kq 1089 2 via via IN cord-010027-r0tl01kq 1089 3 ' ' '' cord-010027-r0tl01kq 1089 4 request request NN cord-010027-r0tl01kq 1089 5 testing testing NN cord-010027-r0tl01kq 1089 6 ' ' '' cord-010027-r0tl01kq 1089 7 ( ( -LRB- cord-010027-r0tl01kq 1089 8 clinical clinical JJ cord-010027-r0tl01kq 1089 9 criteria criterion NNS cord-010027-r0tl01kq 1089 10 and and CC cord-010027-r0tl01kq 1089 11 referral referral JJ cord-010027-r0tl01kq 1089 12 dependent dependent NN cord-010027-r0tl01kq 1089 13 ) ) -RRB- cord-010027-r0tl01kq 1089 14 . . . cord-010027-r0tl01kq 1089 15 ' ' '' cord-010027-r0tl01kq 1090 1 Molecular molecular JJ cord-010027-r0tl01kq 1090 2 - - HYPH cord-010027-r0tl01kq 1090 3 positive positive JJ cord-010027-r0tl01kq 1090 4 ' ' '' cord-010027-r0tl01kq 1090 5 profiles profile NNS cord-010027-r0tl01kq 1090 6 for for IN cord-010027-r0tl01kq 1090 7 LS LS NNP cord-010027-r0tl01kq 1090 8 were be VBD cord-010027-r0tl01kq 1090 9 identified identify VBN cord-010027-r0tl01kq 1090 10 for for IN cord-010027-r0tl01kq 1090 11 genetic genetic JJ cord-010027-r0tl01kq 1090 12 pre pre JJ cord-010027-r0tl01kq 1090 13 - - JJ cord-010027-r0tl01kq 1090 14 testing testing JJ cord-010027-r0tl01kq 1090 15 counselling counselling NN cord-010027-r0tl01kq 1090 16 / / SYM cord-010027-r0tl01kq 1090 17 diagnostic diagnostic JJ cord-010027-r0tl01kq 1090 18 testing testing NN cord-010027-r0tl01kq 1090 19 . . . cord-010027-r0tl01kq 1091 1 Results result NNS cord-010027-r0tl01kq 1091 2 : : : cord-010027-r0tl01kq 1092 1 41 41 CD cord-010027-r0tl01kq 1092 2 patients patient NNS cord-010027-r0tl01kq 1092 3 with with IN cord-010027-r0tl01kq 1092 4 potential potential JJ cord-010027-r0tl01kq 1092 5 LS ls NN cord-010027-r0tl01kq 1092 6 were be VBD cord-010027-r0tl01kq 1092 7 identified identify VBN cord-010027-r0tl01kq 1092 8 , , , cord-010027-r0tl01kq 1092 9 24 24 CD cord-010027-r0tl01kq 1092 10 ( ( -LRB- cord-010027-r0tl01kq 1092 11 58.5 58.5 CD cord-010027-r0tl01kq 1092 12 % % NN cord-010027-r0tl01kq 1092 13 ) ) -RRB- cord-010027-r0tl01kq 1092 14 underwent undergo VBD cord-010027-r0tl01kq 1092 15 genetic genetic JJ cord-010027-r0tl01kq 1092 16 counselling counselling NN cord-010027-r0tl01kq 1092 17 / / SYM cord-010027-r0tl01kq 1092 18 testing testing NN cord-010027-r0tl01kq 1092 19 and and CC cord-010027-r0tl01kq 1092 20 13 13 CD cord-010027-r0tl01kq 1092 21 cases case NNS cord-010027-r0tl01kq 1092 22 were be VBD cord-010027-r0tl01kq 1092 23 confirmed confirm VBN cord-010027-r0tl01kq 1092 24 LS LS NNP cord-010027-r0tl01kq 1092 25 with with IN cord-010027-r0tl01kq 1092 26 germline germline JJ cord-010027-r0tl01kq 1092 27 pathogenic pathogenic JJ cord-010027-r0tl01kq 1092 28 mutations mutation NNS cord-010027-r0tl01kq 1092 29 in in IN cord-010027-r0tl01kq 1092 30 the the DT cord-010027-r0tl01kq 1092 31 MMR MMR NNP cord-010027-r0tl01kq 1092 32 genes gene NNS cord-010027-r0tl01kq 1092 33 . . . cord-010027-r0tl01kq 1093 1 Eight eight CD cord-010027-r0tl01kq 1093 2 of of IN cord-010027-r0tl01kq 1093 3 these these DT cord-010027-r0tl01kq 1093 4 were be VBD cord-010027-r0tl01kq 1093 5 identified identify VBN cord-010027-r0tl01kq 1093 6 using use VBG cord-010027-r0tl01kq 1093 7 reflex reflex NN cord-010027-r0tl01kq 1093 8 testing testing NN cord-010027-r0tl01kq 1093 9 . . . cord-010027-r0tl01kq 1094 1 Conclusion conclusion NN cord-010027-r0tl01kq 1094 2 : : : cord-010027-r0tl01kq 1095 1 This this DT cord-010027-r0tl01kq 1095 2 is be VBZ cord-010027-r0tl01kq 1095 3 the the DT cord-010027-r0tl01kq 1095 4 first first JJ cord-010027-r0tl01kq 1095 5 UK UK NNP cord-010027-r0tl01kq 1095 6 study study NN cord-010027-r0tl01kq 1095 7 to to TO cord-010027-r0tl01kq 1095 8 show show VB cord-010027-r0tl01kq 1095 9 that that IN cord-010027-r0tl01kq 1095 10 screening screening NN cord-010027-r0tl01kq 1095 11 for for IN cord-010027-r0tl01kq 1095 12 LS ls NN cord-010027-r0tl01kq 1095 13 in in IN cord-010027-r0tl01kq 1095 14 patients patient NNS cord-010027-r0tl01kq 1095 15 with with IN cord-010027-r0tl01kq 1095 16 colorectal colorectal JJ cord-010027-r0tl01kq 1095 17 cancer cancer NN cord-010027-r0tl01kq 1095 18 under under IN cord-010027-r0tl01kq 1095 19 the the DT cord-010027-r0tl01kq 1095 20 age age NN cord-010027-r0tl01kq 1095 21 of of IN cord-010027-r0tl01kq 1095 22 60 60 CD cord-010027-r0tl01kq 1095 23 is be VBZ cord-010027-r0tl01kq 1095 24 effective effective JJ cord-010027-r0tl01kq 1095 25 at at IN cord-010027-r0tl01kq 1095 26 identifying identify VBG cord-010027-r0tl01kq 1095 27 families family NNS cord-010027-r0tl01kq 1095 28 with with IN cord-010027-r0tl01kq 1095 29 LS LS NNP cord-010027-r0tl01kq 1095 30 . . . cord-010027-r0tl01kq 1096 1 The the DT cord-010027-r0tl01kq 1096 2 testing testing NN cord-010027-r0tl01kq 1096 3 protocol protocol NN cord-010027-r0tl01kq 1096 4 is be VBZ cord-010027-r0tl01kq 1096 5 in in IN cord-010027-r0tl01kq 1096 6 line line NN cord-010027-r0tl01kq 1096 7 with with IN cord-010027-r0tl01kq 1096 8 the the DT cord-010027-r0tl01kq 1096 9 recent recent JJ cord-010027-r0tl01kq 1096 10 recommendations recommendation NNS cord-010027-r0tl01kq 1096 11 . . . cord-010027-r0tl01kq 1097 1 The the DT cord-010027-r0tl01kq 1097 2 human human JJ cord-010027-r0tl01kq 1097 3 microbiome microbiome NN cord-010027-r0tl01kq 1097 4 is be VBZ cord-010027-r0tl01kq 1097 5 rich rich JJ cord-010027-r0tl01kq 1097 6 and and CC cord-010027-r0tl01kq 1097 7 diverse diverse JJ cord-010027-r0tl01kq 1097 8 , , , cord-010027-r0tl01kq 1097 9 especially especially RB cord-010027-r0tl01kq 1097 10 in in IN cord-010027-r0tl01kq 1097 11 the the DT cord-010027-r0tl01kq 1097 12 oral oral JJ cord-010027-r0tl01kq 1097 13 cavity cavity NN cord-010027-r0tl01kq 1097 14 and and CC cord-010027-r0tl01kq 1097 15 gastro gastro JJ cord-010027-r0tl01kq 1097 16 - - JJ cord-010027-r0tl01kq 1097 17 intestinal intestinal JJ cord-010027-r0tl01kq 1097 18 tract tract NN cord-010027-r0tl01kq 1097 19 , , , cord-010027-r0tl01kq 1097 20 where where WRB cord-010027-r0tl01kq 1097 21 it -PRON- PRP cord-010027-r0tl01kq 1097 22 has have VBZ cord-010027-r0tl01kq 1097 23 been be VBN cord-010027-r0tl01kq 1097 24 shown show VBN cord-010027-r0tl01kq 1097 25 to to TO cord-010027-r0tl01kq 1097 26 be be VB cord-010027-r0tl01kq 1097 27 more more RBR cord-010027-r0tl01kq 1097 28 stable stable JJ cord-010027-r0tl01kq 1097 29 in in IN cord-010027-r0tl01kq 1097 30 adults adult NNS cord-010027-r0tl01kq 1097 31 , , , cord-010027-r0tl01kq 1097 32 although although IN cord-010027-r0tl01kq 1097 33 various various JJ cord-010027-r0tl01kq 1097 34 factors factor NNS cord-010027-r0tl01kq 1097 35 such such JJ cord-010027-r0tl01kq 1097 36 as as IN cord-010027-r0tl01kq 1097 37 diet diet NN cord-010027-r0tl01kq 1097 38 and and CC cord-010027-r0tl01kq 1097 39 antibiotics antibiotic NNS cord-010027-r0tl01kq 1097 40 mays mays NNP cord-010027-r0tl01kq 1097 41 influence influence VBP cord-010027-r0tl01kq 1097 42 its -PRON- PRP$ cord-010027-r0tl01kq 1097 43 composition composition NN cord-010027-r0tl01kq 1097 44 . . . cord-010027-r0tl01kq 1098 1 This this DT cord-010027-r0tl01kq 1098 2 pilot pilot NN cord-010027-r0tl01kq 1098 3 study study NN cord-010027-r0tl01kq 1098 4 aimed aim VBN cord-010027-r0tl01kq 1098 5 to to TO cord-010027-r0tl01kq 1098 6 examine examine VB cord-010027-r0tl01kq 1098 7 and and CC cord-010027-r0tl01kq 1098 8 compare compare VB cord-010027-r0tl01kq 1098 9 the the DT cord-010027-r0tl01kq 1098 10 oral oral JJ cord-010027-r0tl01kq 1098 11 and and CC cord-010027-r0tl01kq 1098 12 gut gut VB cord-010027-r0tl01kq 1098 13 microbial microbial JJ cord-010027-r0tl01kq 1098 14 composition composition NN cord-010027-r0tl01kq 1098 15 in in IN cord-010027-r0tl01kq 1098 16 four four CD cord-010027-r0tl01kq 1098 17 individuals individual NNS cord-010027-r0tl01kq 1098 18 using use VBG cord-010027-r0tl01kq 1098 19 a a DT cord-010027-r0tl01kq 1098 20 culture culture NN cord-010027-r0tl01kq 1098 21 - - HYPH cord-010027-r0tl01kq 1098 22 independent independent JJ cord-010027-r0tl01kq 1098 23 approach approach NN cord-010027-r0tl01kq 1098 24 . . . cord-010027-r0tl01kq 1099 1 Methods method NNS cord-010027-r0tl01kq 1099 2 : : : cord-010027-r0tl01kq 1100 1 Saliva saliva NN cord-010027-r0tl01kq 1100 2 and and CC cord-010027-r0tl01kq 1100 3 faecal faecal JJ cord-010027-r0tl01kq 1100 4 samples sample NNS cord-010027-r0tl01kq 1100 5 were be VBD cord-010027-r0tl01kq 1100 6 collected collect VBN cord-010027-r0tl01kq 1100 7 from from IN cord-010027-r0tl01kq 1100 8 volunteers volunteer NNS cord-010027-r0tl01kq 1100 9 within within IN cord-010027-r0tl01kq 1100 10 the the DT cord-010027-r0tl01kq 1100 11 same same JJ cord-010027-r0tl01kq 1100 12 day day NN cord-010027-r0tl01kq 1100 13 on on IN cord-010027-r0tl01kq 1100 14 two two CD cord-010027-r0tl01kq 1100 15 separate separate JJ cord-010027-r0tl01kq 1100 16 occasions occasion NNS cord-010027-r0tl01kq 1100 17 . . . cord-010027-r0tl01kq 1101 1 The the DT cord-010027-r0tl01kq 1101 2 V4 V4 NNP cord-010027-r0tl01kq 1101 3 region region NN cord-010027-r0tl01kq 1101 4 of of IN cord-010027-r0tl01kq 1101 5 the the DT cord-010027-r0tl01kq 1101 6 16S 16S NNP cord-010027-r0tl01kq 1101 7 rRNA rRNA NNP cord-010027-r0tl01kq 1101 8 gene gene NN cord-010027-r0tl01kq 1101 9 was be VBD cord-010027-r0tl01kq 1101 10 amplified amplify VBN cord-010027-r0tl01kq 1101 11 in in IN cord-010027-r0tl01kq 1101 12 all all DT cord-010027-r0tl01kq 1101 13 samples sample NNS cord-010027-r0tl01kq 1101 14 and and CC cord-010027-r0tl01kq 1101 15 PCR PCR NNP cord-010027-r0tl01kq 1101 16 products product NNS cord-010027-r0tl01kq 1101 17 sequenced sequence VBN cord-010027-r0tl01kq 1101 18 on on IN cord-010027-r0tl01kq 1101 19 an an DT cord-010027-r0tl01kq 1101 20 Illumina Illumina NNP cord-010027-r0tl01kq 1101 21 MiSeq MiSeq NNP cord-010027-r0tl01kq 1101 22 . . . cord-010027-r0tl01kq 1102 1 Unique unique JJ cord-010027-r0tl01kq 1102 2 barcodes barcode NNS cord-010027-r0tl01kq 1102 3 were be VBD cord-010027-r0tl01kq 1102 4 used use VBN cord-010027-r0tl01kq 1102 5 to to TO cord-010027-r0tl01kq 1102 6 sequence sequence VB cord-010027-r0tl01kq 1102 7 24 24 CD cord-010027-r0tl01kq 1102 8 multiplexed multiplexed JJ cord-010027-r0tl01kq 1102 9 libraries library NNS cord-010027-r0tl01kq 1102 10 together together RB cord-010027-r0tl01kq 1102 11 . . . cord-010027-r0tl01kq 1103 1 The the DT cord-010027-r0tl01kq 1103 2 data datum NNS cord-010027-r0tl01kq 1103 3 were be VBD cord-010027-r0tl01kq 1103 4 analysed analyse VBN cord-010027-r0tl01kq 1103 5 using use VBG cord-010027-r0tl01kq 1103 6 the the DT cord-010027-r0tl01kq 1103 7 Quantitative Quantitative NNP cord-010027-r0tl01kq 1103 8 Insights Insights NNPS cord-010027-r0tl01kq 1103 9 into into IN cord-010027-r0tl01kq 1103 10 Microbial Microbial NNP cord-010027-r0tl01kq 1103 11 Ecology Ecology NNP cord-010027-r0tl01kq 1103 12 ( ( -LRB- cord-010027-r0tl01kq 1103 13 QIIME QIIME NNP cord-010027-r0tl01kq 1103 14 ) ) -RRB- cord-010027-r0tl01kq 1103 15 software software NN cord-010027-r0tl01kq 1103 16 . . . cord-010027-r0tl01kq 1104 1 A a DT cord-010027-r0tl01kq 1104 2 second second JJ cord-010027-r0tl01kq 1104 3 series series NN cord-010027-r0tl01kq 1104 4 of of IN cord-010027-r0tl01kq 1104 5 42 42 CD cord-010027-r0tl01kq 1104 6 samples sample NNS cord-010027-r0tl01kq 1104 7 of of IN cord-010027-r0tl01kq 1104 8 faeces faece NNS cord-010027-r0tl01kq 1104 9 from from IN cord-010027-r0tl01kq 1104 10 3 3 CD cord-010027-r0tl01kq 1104 11 individuals individual NNS cord-010027-r0tl01kq 1104 12 were be VBD cord-010027-r0tl01kq 1104 13 run run VBN cord-010027-r0tl01kq 1104 14 to to TO cord-010027-r0tl01kq 1104 15 investigate investigate VB cord-010027-r0tl01kq 1104 16 consistency consistency NN cord-010027-r0tl01kq 1104 17 over over IN cord-010027-r0tl01kq 1104 18 time time NN cord-010027-r0tl01kq 1104 19 . . . cord-010027-r0tl01kq 1105 1 Operational operational JJ cord-010027-r0tl01kq 1105 2 taxonomic taxonomic JJ cord-010027-r0tl01kq 1105 3 units unit NNS cord-010027-r0tl01kq 1105 4 ( ( -LRB- cord-010027-r0tl01kq 1105 5 OTUs otu NNS cord-010027-r0tl01kq 1105 6 ) ) -RRB- cord-010027-r0tl01kq 1105 7 were be VBD cord-010027-r0tl01kq 1105 8 assessed assess VBN cord-010027-r0tl01kq 1105 9 and and CC cord-010027-r0tl01kq 1105 10 showed show VBD cord-010027-r0tl01kq 1105 11 5 5 CD cord-010027-r0tl01kq 1105 12 major major JJ cord-010027-r0tl01kq 1105 13 phyla phylum NNS cord-010027-r0tl01kq 1105 14 represented represent VBN cord-010027-r0tl01kq 1105 15 in in IN cord-010027-r0tl01kq 1105 16 the the DT cord-010027-r0tl01kq 1105 17 saliva saliva NN cord-010027-r0tl01kq 1105 18 samples sample NNS cord-010027-r0tl01kq 1105 19 : : : cord-010027-r0tl01kq 1106 1 Firmicutes Firmicutes NNPS cord-010027-r0tl01kq 1106 2 , , , cord-010027-r0tl01kq 1106 3 Proteobacteria Proteobacteria NNP cord-010027-r0tl01kq 1106 4 , , , cord-010027-r0tl01kq 1106 5 Bacteroidetes Bacteroidetes NNPS cord-010027-r0tl01kq 1106 6 , , , cord-010027-r0tl01kq 1106 7 Fusobacteria Fusobacteria NNP cord-010027-r0tl01kq 1106 8 and and CC cord-010027-r0tl01kq 1106 9 Actinobacteria Actinobacteria NNP cord-010027-r0tl01kq 1106 10 . . . cord-010027-r0tl01kq 1107 1 Similar similar JJ cord-010027-r0tl01kq 1107 2 phyla phylum NNS cord-010027-r0tl01kq 1107 3 except except IN cord-010027-r0tl01kq 1107 4 forFusobacteria forfusobacteria NN cord-010027-r0tl01kq 1107 5 , , , cord-010027-r0tl01kq 1107 6 were be VBD cord-010027-r0tl01kq 1107 7 found find VBN cord-010027-r0tl01kq 1107 8 in in IN cord-010027-r0tl01kq 1107 9 the the DT cord-010027-r0tl01kq 1107 10 stool stool NN cord-010027-r0tl01kq 1107 11 samples sample NNS cord-010027-r0tl01kq 1107 12 . . . cord-010027-r0tl01kq 1108 1 The the DT cord-010027-r0tl01kq 1108 2 weighted weighted JJ cord-010027-r0tl01kq 1108 3 Unifrac Unifrac NNP cord-010027-r0tl01kq 1108 4 PCoA PCoA NNP cord-010027-r0tl01kq 1108 5 analysis analysis NN cord-010027-r0tl01kq 1108 6 displayed display VBD cord-010027-r0tl01kq 1108 7 a a DT cord-010027-r0tl01kq 1108 8 clear clear JJ cord-010027-r0tl01kq 1108 9 separation separation NN cord-010027-r0tl01kq 1108 10 of of IN cord-010027-r0tl01kq 1108 11 the the DT cord-010027-r0tl01kq 1108 12 2 2 CD cord-010027-r0tl01kq 1108 13 sample sample NN cord-010027-r0tl01kq 1108 14 groups group NNS cord-010027-r0tl01kq 1108 15 , , , cord-010027-r0tl01kq 1108 16 and and CC cord-010027-r0tl01kq 1108 17 also also RB cord-010027-r0tl01kq 1108 18 showed show VBD cord-010027-r0tl01kq 1108 19 a a DT cord-010027-r0tl01kq 1108 20 more more JJR cord-010027-r0tl01kq 1108 21 disperse disperse NN cord-010027-r0tl01kq 1108 22 bacterial bacterial JJ cord-010027-r0tl01kq 1108 23 profile profile NN cord-010027-r0tl01kq 1108 24 for for IN cord-010027-r0tl01kq 1108 25 the the DT cord-010027-r0tl01kq 1108 26 saliva saliva NN cord-010027-r0tl01kq 1108 27 samples sample NNS cord-010027-r0tl01kq 1108 28 , , , cord-010027-r0tl01kq 1108 29 based base VBN cord-010027-r0tl01kq 1108 30 on on IN cord-010027-r0tl01kq 1108 31 population population NN cord-010027-r0tl01kq 1108 32 sizes size NNS cord-010027-r0tl01kq 1108 33 , , , cord-010027-r0tl01kq 1108 34 whereas whereas IN cord-010027-r0tl01kq 1108 35 rarefaction rarefaction NN cord-010027-r0tl01kq 1108 36 curves curve NNS cord-010027-r0tl01kq 1108 37 and and CC cord-010027-r0tl01kq 1108 38 unweighted unweighted JJ cord-010027-r0tl01kq 1108 39 analysis analysis NN cord-010027-r0tl01kq 1108 40 indicated indicate VBD cord-010027-r0tl01kq 1108 41 higher high JJR cord-010027-r0tl01kq 1108 42 bacterial bacterial JJ cord-010027-r0tl01kq 1108 43 diversity diversity NN cord-010027-r0tl01kq 1108 44 in in IN cord-010027-r0tl01kq 1108 45 the the DT cord-010027-r0tl01kq 1108 46 stool stool NN cord-010027-r0tl01kq 1108 47 samples sample NNS cord-010027-r0tl01kq 1108 48 . . . cord-010027-r0tl01kq 1109 1 Each each DT cord-010027-r0tl01kq 1109 2 individual individual NN cord-010027-r0tl01kq 1109 3 could could MD cord-010027-r0tl01kq 1109 4 be be VB cord-010027-r0tl01kq 1109 5 distinguished distinguish VBN cord-010027-r0tl01kq 1109 6 either either CC cord-010027-r0tl01kq 1109 7 by by IN cord-010027-r0tl01kq 1109 8 oral oral JJ cord-010027-r0tl01kq 1109 9 or or CC cord-010027-r0tl01kq 1109 10 faecal faecal JJ cord-010027-r0tl01kq 1109 11 microbiome microbiome NN cord-010027-r0tl01kq 1109 12 . . . cord-010027-r0tl01kq 1110 1 One one CD cord-010027-r0tl01kq 1110 2 volunteer volunteer NN cord-010027-r0tl01kq 1110 3 who who WP cord-010027-r0tl01kq 1110 4 had have VBD cord-010027-r0tl01kq 1110 5 had have VBN cord-010027-r0tl01kq 1110 6 previous previous JJ cord-010027-r0tl01kq 1110 7 radiotherapy radiotherapy NN cord-010027-r0tl01kq 1110 8 to to IN cord-010027-r0tl01kq 1110 9 the the DT cord-010027-r0tl01kq 1110 10 mouth mouth NN cord-010027-r0tl01kq 1110 11 displayed display VBD cord-010027-r0tl01kq 1110 12 a a DT cord-010027-r0tl01kq 1110 13 particularly particularly RB cord-010027-r0tl01kq 1110 14 distinct distinct JJ cord-010027-r0tl01kq 1110 15 oral oral JJ cord-010027-r0tl01kq 1110 16 microbiota microbiota NN cord-010027-r0tl01kq 1110 17 . . . cord-010027-r0tl01kq 1111 1 The the DT cord-010027-r0tl01kq 1111 2 microbial microbial JJ cord-010027-r0tl01kq 1111 3 community community NN cord-010027-r0tl01kq 1111 4 profiles profile NNS cord-010027-r0tl01kq 1111 5 of of IN cord-010027-r0tl01kq 1111 6 saliva saliva NN cord-010027-r0tl01kq 1111 7 and and CC cord-010027-r0tl01kq 1111 8 faecal faecal JJ cord-010027-r0tl01kq 1111 9 samples sample NNS cord-010027-r0tl01kq 1111 10 of of IN cord-010027-r0tl01kq 1111 11 four four CD cord-010027-r0tl01kq 1111 12 individuals individual NNS cord-010027-r0tl01kq 1111 13 were be VBD cord-010027-r0tl01kq 1111 14 found find VBN cord-010027-r0tl01kq 1111 15 to to TO cord-010027-r0tl01kq 1111 16 be be VB cord-010027-r0tl01kq 1111 17 distinct distinct JJ cord-010027-r0tl01kq 1111 18 from from IN cord-010027-r0tl01kq 1111 19 each each DT cord-010027-r0tl01kq 1111 20 other other JJ cord-010027-r0tl01kq 1111 21 , , , cord-010027-r0tl01kq 1111 22 despite despite IN cord-010027-r0tl01kq 1111 23 sharing share VBG cord-010027-r0tl01kq 1111 24 similar similar JJ cord-010027-r0tl01kq 1111 25 phyla phylum NNS cord-010027-r0tl01kq 1111 26 . . . cord-010027-r0tl01kq 1112 1 Analysis analysis NN cord-010027-r0tl01kq 1112 2 of of IN cord-010027-r0tl01kq 1112 3 multiple multiple JJ cord-010027-r0tl01kq 1112 4 samples sample NNS cord-010027-r0tl01kq 1112 5 from from IN cord-010027-r0tl01kq 1112 6 each each DT cord-010027-r0tl01kq 1112 7 volunteer volunteer NN cord-010027-r0tl01kq 1112 8 clearly clearly RB cord-010027-r0tl01kq 1112 9 separated separate VBD cord-010027-r0tl01kq 1112 10 each each DT cord-010027-r0tl01kq 1112 11 sample sample NN cord-010027-r0tl01kq 1112 12 by by IN cord-010027-r0tl01kq 1112 13 volunteer volunteer NN cord-010027-r0tl01kq 1112 14 and and CC cord-010027-r0tl01kq 1112 15 by by IN cord-010027-r0tl01kq 1112 16 sample sample NN cord-010027-r0tl01kq 1112 17 type type NN cord-010027-r0tl01kq 1112 18 . . . cord-010027-r0tl01kq 1113 1 Are be VBP cord-010027-r0tl01kq 1113 2 Current current JJ cord-010027-r0tl01kq 1113 3 Automated Automated NNP cord-010027-r0tl01kq 1113 4 Approaches approach NNS cord-010027-r0tl01kq 1113 5 for for IN cord-010027-r0tl01kq 1113 6 Determining determine VBG cord-010027-r0tl01kq 1113 7 the the DT cord-010027-r0tl01kq 1113 8 Phylogeny Phylogeny NNP cord-010027-r0tl01kq 1113 9 of of IN cord-010027-r0tl01kq 1113 10 Multiple Multiple NNP cord-010027-r0tl01kq 1113 11 Deposits deposit NNS cord-010027-r0tl01kq 1113 12 Capable capable JJ cord-010027-r0tl01kq 1113 13 of of IN cord-010027-r0tl01kq 1113 14 Interpreting interpret VBG cord-010027-r0tl01kq 1113 15 the the DT cord-010027-r0tl01kq 1113 16 Complexity Complexity NNP cord-010027-r0tl01kq 1113 17 of of IN cord-010027-r0tl01kq 1113 18 Cancer Cancer NNP cord-010027-r0tl01kq 1113 19 Evolution evolution NN cord-010027-r0tl01kq 1113 20 ? ? . cord-010027-r0tl01kq 1114 1 P P NNP cord-010027-r0tl01kq 1114 2 TG TG NNP cord-010027-r0tl01kq 1114 3 Palmer Palmer NNP cord-010027-r0tl01kq 1114 4 ; ; : cord-010027-r0tl01kq 1114 5 HM HM NNP cord-010027-r0tl01kq 1114 6 Wood Wood NNP cord-010027-r0tl01kq 1114 7 ; ; : cord-010027-r0tl01kq 1114 8 M M NNP cord-010027-r0tl01kq 1114 9 Taylor Taylor NNP cord-010027-r0tl01kq 1114 10 ; ; : cord-010027-r0tl01kq 1114 11 W W NNP cord-010027-r0tl01kq 1114 12 Fateen Fateen NNP cord-010027-r0tl01kq 1114 13 ; ; : cord-010027-r0tl01kq 1114 14 IM IM NNP cord-010027-r0tl01kq 1114 15 Carr Carr NNP cord-010027-r0tl01kq 1114 16 ; ; : cord-010027-r0tl01kq 1114 17 P P NNP cord-010027-r0tl01kq 1114 18 Quirke Quirke NNP cord-010027-r0tl01kq 1114 19 Tumour tumour NN cord-010027-r0tl01kq 1114 20 heterogeneity heterogeneity NN cord-010027-r0tl01kq 1114 21 is be VBZ cord-010027-r0tl01kq 1114 22 central central JJ cord-010027-r0tl01kq 1114 23 to to IN cord-010027-r0tl01kq 1114 24 chemotherapy chemotherapy NN cord-010027-r0tl01kq 1114 25 resistance resistance NN cord-010027-r0tl01kq 1114 26 and and CC cord-010027-r0tl01kq 1114 27 disease disease NN cord-010027-r0tl01kq 1114 28 progression progression NN cord-010027-r0tl01kq 1114 29 in in IN cord-010027-r0tl01kq 1114 30 advanced advanced JJ cord-010027-r0tl01kq 1114 31 malignancy malignancy NN cord-010027-r0tl01kq 1114 32 . . . cord-010027-r0tl01kq 1115 1 This this DT cord-010027-r0tl01kq 1115 2 heterogeneity heterogeneity NN cord-010027-r0tl01kq 1115 3 arises arise VBZ cord-010027-r0tl01kq 1115 4 due due IN cord-010027-r0tl01kq 1115 5 to to IN cord-010027-r0tl01kq 1115 6 the the DT cord-010027-r0tl01kq 1115 7 evolution evolution NN cord-010027-r0tl01kq 1115 8 of of IN cord-010027-r0tl01kq 1115 9 clones clone NNS cord-010027-r0tl01kq 1115 10 within within IN cord-010027-r0tl01kq 1115 11 the the DT cord-010027-r0tl01kq 1115 12 tumour tumour NN cord-010027-r0tl01kq 1115 13 cell cell NN cord-010027-r0tl01kq 1115 14 population population NN cord-010027-r0tl01kq 1115 15 ; ; : cord-010027-r0tl01kq 1115 16 the the DT cord-010027-r0tl01kq 1115 17 advent advent NN cord-010027-r0tl01kq 1115 18 of of IN cord-010027-r0tl01kq 1115 19 high high JJ cord-010027-r0tl01kq 1115 20 throughput throughput NN cord-010027-r0tl01kq 1115 21 sequencing sequencing NN cord-010027-r0tl01kq 1115 22 has have VBZ cord-010027-r0tl01kq 1115 23 allowed allow VBN cord-010027-r0tl01kq 1115 24 the the DT cord-010027-r0tl01kq 1115 25 detection detection NN cord-010027-r0tl01kq 1115 26 of of IN cord-010027-r0tl01kq 1115 27 different different JJ cord-010027-r0tl01kq 1115 28 tumour tumour NN cord-010027-r0tl01kq 1115 29 cell cell NN cord-010027-r0tl01kq 1115 30 clones clone NNS cord-010027-r0tl01kq 1115 31 within within IN cord-010027-r0tl01kq 1115 32 and and CC cord-010027-r0tl01kq 1115 33 between between IN cord-010027-r0tl01kq 1115 34 primary primary JJ cord-010027-r0tl01kq 1115 35 tumours tumour NNS cord-010027-r0tl01kq 1115 36 and and CC cord-010027-r0tl01kq 1115 37 their -PRON- PRP$ cord-010027-r0tl01kq 1115 38 metastases metastasis NNS cord-010027-r0tl01kq 1115 39 , , , cord-010027-r0tl01kq 1115 40 potentially potentially RB cord-010027-r0tl01kq 1115 41 allowing allow VBG cord-010027-r0tl01kq 1115 42 mapping mapping NN cord-010027-r0tl01kq 1115 43 of of IN cord-010027-r0tl01kq 1115 44 tumour tumour NN cord-010027-r0tl01kq 1115 45 evolution evolution NN cord-010027-r0tl01kq 1115 46 . . . cord-010027-r0tl01kq 1116 1 Several several JJ cord-010027-r0tl01kq 1116 2 , , , cord-010027-r0tl01kq 1116 3 automated automate VBN cord-010027-r0tl01kq 1116 4 bioinformatic bioinformatic JJ cord-010027-r0tl01kq 1116 5 approaches approach NNS cord-010027-r0tl01kq 1116 6 have have VBP cord-010027-r0tl01kq 1116 7 been be VBN cord-010027-r0tl01kq 1116 8 devised devise VBN cord-010027-r0tl01kq 1116 9 for for IN cord-010027-r0tl01kq 1116 10 determining determine VBG cord-010027-r0tl01kq 1116 11 tumour tumour NN cord-010027-r0tl01kq 1116 12 phylogeny phylogeny NN cord-010027-r0tl01kq 1116 13 from from IN cord-010027-r0tl01kq 1116 14 changes change NNS cord-010027-r0tl01kq 1116 15 in in IN cord-010027-r0tl01kq 1116 16 genomic genomic JJ cord-010027-r0tl01kq 1116 17 copy copy NN cord-010027-r0tl01kq 1116 18 number number NN cord-010027-r0tl01kq 1116 19 ( ( -LRB- cord-010027-r0tl01kq 1116 20 CN CN NNP cord-010027-r0tl01kq 1116 21 ) ) -RRB- cord-010027-r0tl01kq 1116 22 ; ; : cord-010027-r0tl01kq 1116 23 either either CC cord-010027-r0tl01kq 1116 24 by by IN cord-010027-r0tl01kq 1116 25 the the DT cord-010027-r0tl01kq 1116 26 overall overall JJ cord-010027-r0tl01kq 1116 27 similarity similarity NN cord-010027-r0tl01kq 1116 28 of of IN cord-010027-r0tl01kq 1116 29 genomic genomic JJ cord-010027-r0tl01kq 1116 30 changes change NNS cord-010027-r0tl01kq 1116 31 between between IN cord-010027-r0tl01kq 1116 32 tumour tumour NN cord-010027-r0tl01kq 1116 33 deposits deposit NNS cord-010027-r0tl01kq 1116 34 or or CC cord-010027-r0tl01kq 1116 35 by by IN cord-010027-r0tl01kq 1116 36 examining examine VBG cord-010027-r0tl01kq 1116 37 the the DT cord-010027-r0tl01kq 1116 38 occurrence occurrence NN cord-010027-r0tl01kq 1116 39 of of IN cord-010027-r0tl01kq 1116 40 shared share VBN cord-010027-r0tl01kq 1116 41 breakpoints breakpoint NNS cord-010027-r0tl01kq 1116 42 . . . cord-010027-r0tl01kq 1117 1 We -PRON- PRP cord-010027-r0tl01kq 1117 2 have have VBP cord-010027-r0tl01kq 1117 3 compared compare VBN cord-010027-r0tl01kq 1117 4 these these DT cord-010027-r0tl01kq 1117 5 automated automate VBN cord-010027-r0tl01kq 1117 6 approaches approach NNS cord-010027-r0tl01kq 1117 7 with with IN cord-010027-r0tl01kq 1117 8 a a DT cord-010027-r0tl01kq 1117 9 manual manual JJ cord-010027-r0tl01kq 1117 10 determination determination NN cord-010027-r0tl01kq 1117 11 of of IN cord-010027-r0tl01kq 1117 12 phylogeny phylogeny NN cord-010027-r0tl01kq 1117 13 based base VBN cord-010027-r0tl01kq 1117 14 upon upon IN cord-010027-r0tl01kq 1117 15 shared share VBN cord-010027-r0tl01kq 1117 16 breakpoints breakpoint NNS cord-010027-r0tl01kq 1117 17 identified identify VBN cord-010027-r0tl01kq 1117 18 from from IN cord-010027-r0tl01kq 1117 19 four four CD cord-010027-r0tl01kq 1117 20 cases case NNS cord-010027-r0tl01kq 1117 21 of of IN cord-010027-r0tl01kq 1117 22 metastatic metastatic JJ cord-010027-r0tl01kq 1117 23 colorectal colorectal JJ cord-010027-r0tl01kq 1117 24 cancer cancer NN cord-010027-r0tl01kq 1117 25 consisting consist VBG cord-010027-r0tl01kq 1117 26 of of IN cord-010027-r0tl01kq 1117 27 between between IN cord-010027-r0tl01kq 1117 28 6 6 CD cord-010027-r0tl01kq 1117 29 and and CC cord-010027-r0tl01kq 1117 30 53 53 CD cord-010027-r0tl01kq 1117 31 deposits deposit NNS cord-010027-r0tl01kq 1117 32 . . . cord-010027-r0tl01kq 1118 1 We -PRON- PRP cord-010027-r0tl01kq 1118 2 illustrate illustrate VBP cord-010027-r0tl01kq 1118 3 several several JJ cord-010027-r0tl01kq 1118 4 recurrent recurrent JJ cord-010027-r0tl01kq 1118 5 issues issue NNS cord-010027-r0tl01kq 1118 6 identified identify VBN cord-010027-r0tl01kq 1118 7 with with IN cord-010027-r0tl01kq 1118 8 the the DT cord-010027-r0tl01kq 1118 9 use use NN cord-010027-r0tl01kq 1118 10 of of IN cord-010027-r0tl01kq 1118 11 automated automate VBN cord-010027-r0tl01kq 1118 12 systems system NNS cord-010027-r0tl01kq 1118 13 for for IN cord-010027-r0tl01kq 1118 14 the the DT cord-010027-r0tl01kq 1118 15 determination determination NN cord-010027-r0tl01kq 1118 16 of of IN cord-010027-r0tl01kq 1118 17 tumour tumour NN cord-010027-r0tl01kq 1118 18 phylogeny phylogeny NN cord-010027-r0tl01kq 1118 19 associated associate VBN cord-010027-r0tl01kq 1118 20 with with IN cord-010027-r0tl01kq 1118 21 an an DT cord-010027-r0tl01kq 1118 22 inability inability NN cord-010027-r0tl01kq 1118 23 to to TO cord-010027-r0tl01kq 1118 24 correctly correctly RB cord-010027-r0tl01kq 1118 25 identify identify VB cord-010027-r0tl01kq 1118 26 and and CC cord-010027-r0tl01kq 1118 27 interpret interpret VB cord-010027-r0tl01kq 1118 28 changes change NNS cord-010027-r0tl01kq 1118 29 in in IN cord-010027-r0tl01kq 1118 30 ploidy ploidy NN cord-010027-r0tl01kq 1118 31 , , , cord-010027-r0tl01kq 1118 32 an an DT cord-010027-r0tl01kq 1118 33 inability inability NN cord-010027-r0tl01kq 1118 34 to to TO cord-010027-r0tl01kq 1118 35 identify identify VB cord-010027-r0tl01kq 1118 36 heterogeneity heterogeneity NN cord-010027-r0tl01kq 1118 37 within within IN cord-010027-r0tl01kq 1118 38 tumour tumour NN cord-010027-r0tl01kq 1118 39 deposits deposit NNS cord-010027-r0tl01kq 1118 40 , , , cord-010027-r0tl01kq 1118 41 the the DT cord-010027-r0tl01kq 1118 42 masking masking NN cord-010027-r0tl01kq 1118 43 of of IN cord-010027-r0tl01kq 1118 44 smaller small JJR cord-010027-r0tl01kq 1118 45 events event NNS cord-010027-r0tl01kq 1118 46 by by IN cord-010027-r0tl01kq 1118 47 larger large JJR cord-010027-r0tl01kq 1118 48 ones one NNS cord-010027-r0tl01kq 1118 49 , , , cord-010027-r0tl01kq 1118 50 overinterpretation overinterpretation NN cord-010027-r0tl01kq 1118 51 of of IN cord-010027-r0tl01kq 1118 52 convergent convergent NN cord-010027-r0tl01kq 1118 53 , , , cord-010027-r0tl01kq 1118 54 but but CC cord-010027-r0tl01kq 1118 55 unrelated unrelated JJ cord-010027-r0tl01kq 1118 56 events event NNS cord-010027-r0tl01kq 1118 57 , , , cord-010027-r0tl01kq 1118 58 over over IN cord-010027-r0tl01kq 1118 59 calling call VBG cord-010027-r0tl01kq 1118 60 sequencing sequencing NN cord-010027-r0tl01kq 1118 61 artefacts artefact NNS cord-010027-r0tl01kq 1118 62 as as IN cord-010027-r0tl01kq 1118 63 changes change NNS cord-010027-r0tl01kq 1118 64 in in IN cord-010027-r0tl01kq 1118 65 CN CN NNP cord-010027-r0tl01kq 1118 66 , , , cord-010027-r0tl01kq 1118 67 and and CC cord-010027-r0tl01kq 1118 68 non non JJ cord-010027-r0tl01kq 1118 69 - - JJ cord-010027-r0tl01kq 1118 70 calling calling JJ cord-010027-r0tl01kq 1118 71 of of IN cord-010027-r0tl01kq 1118 72 genuine genuine JJ cord-010027-r0tl01kq 1118 73 CN cn NN cord-010027-r0tl01kq 1118 74 changes change NNS cord-010027-r0tl01kq 1118 75 due due JJ cord-010027-r0tl01kq 1118 76 to to IN cord-010027-r0tl01kq 1118 77 low low JJ cord-010027-r0tl01kq 1118 78 tumour tumour NN cord-010027-r0tl01kq 1118 79 cell cell NN cord-010027-r0tl01kq 1118 80 content content NN cord-010027-r0tl01kq 1118 81 or or CC cord-010027-r0tl01kq 1118 82 low low JJ cord-010027-r0tl01kq 1118 83 sequencing sequencing NN cord-010027-r0tl01kq 1118 84 depth depth NN cord-010027-r0tl01kq 1118 85 . . . cord-010027-r0tl01kq 1119 1 We -PRON- PRP cord-010027-r0tl01kq 1119 2 conclude conclude VBP cord-010027-r0tl01kq 1119 3 that that IN cord-010027-r0tl01kq 1119 4 manual manual JJ cord-010027-r0tl01kq 1119 5 interpretation interpretation NN cord-010027-r0tl01kq 1119 6 of of IN cord-010027-r0tl01kq 1119 7 bioinformatics bioinformatics NN cord-010027-r0tl01kq 1119 8 data data NN cord-010027-r0tl01kq 1119 9 is be VBZ cord-010027-r0tl01kq 1119 10 still still RB cord-010027-r0tl01kq 1119 11 required require VBN cord-010027-r0tl01kq 1119 12 to to TO cord-010027-r0tl01kq 1119 13 determine determine VB cord-010027-r0tl01kq 1119 14 the the DT cord-010027-r0tl01kq 1119 15 phylogeny phylogeny NN cord-010027-r0tl01kq 1119 16 of of IN cord-010027-r0tl01kq 1119 17 metastatic metastatic JJ cord-010027-r0tl01kq 1119 18 cancer cancer NN cord-010027-r0tl01kq 1119 19 within within IN cord-010027-r0tl01kq 1119 20 an an DT cord-010027-r0tl01kq 1119 21 individual individual NN cord-010027-r0tl01kq 1119 22 . . . cord-010027-r0tl01kq 1120 1 Results result NNS cord-010027-r0tl01kq 1120 2 : : : cord-010027-r0tl01kq 1121 1 Levels level NNS cord-010027-r0tl01kq 1121 2 of of IN cord-010027-r0tl01kq 1121 3 agreement agreement NN cord-010027-r0tl01kq 1121 4 between between IN cord-010027-r0tl01kq 1121 5 each each DT cord-010027-r0tl01kq 1121 6 sample sample NN cord-010027-r0tl01kq 1121 7 size size NN cord-010027-r0tl01kq 1121 8 and and CC cord-010027-r0tl01kq 1121 9 the the DT cord-010027-r0tl01kq 1121 10 ' ' `` cord-010027-r0tl01kq 1121 11 gold gold NN cord-010027-r0tl01kq 1121 12 standard standard NN cord-010027-r0tl01kq 1121 13 ' ' '' cord-010027-r0tl01kq 1121 14 were be VBD cord-010027-r0tl01kq 1121 15 evaluated evaluate VBN cord-010027-r0tl01kq 1121 16 using use VBG cord-010027-r0tl01kq 1121 17 Bland Bland NNP cord-010027-r0tl01kq 1121 18 - - HYPH cord-010027-r0tl01kq 1121 19 Altman Altman NNP cord-010027-r0tl01kq 1121 20 plots plot NNS cord-010027-r0tl01kq 1121 21 . . . cord-010027-r0tl01kq 1122 1 7 7 CD cord-010027-r0tl01kq 1122 2 separate separate JJ cord-010027-r0tl01kq 1122 3 pairwise pairwise JJ cord-010027-r0tl01kq 1122 4 comparisons comparison NNS cord-010027-r0tl01kq 1122 5 were be VBD cord-010027-r0tl01kq 1122 6 performed perform VBN cord-010027-r0tl01kq 1122 7 . . . cord-010027-r0tl01kq 1123 1 Some some DT cord-010027-r0tl01kq 1123 2 small small JJ cord-010027-r0tl01kq 1123 3 sample sample NN cord-010027-r0tl01kq 1123 4 sizes size NNS cord-010027-r0tl01kq 1123 5 were be VBD cord-010027-r0tl01kq 1123 6 shown show VBN cord-010027-r0tl01kq 1123 7 to to TO cord-010027-r0tl01kq 1123 8 have have VB cord-010027-r0tl01kq 1123 9 small small JJ cord-010027-r0tl01kq 1123 10 mean mean VB cord-010027-r0tl01kq 1123 11 difference difference NN cord-010027-r0tl01kq 1123 12 and and CC cord-010027-r0tl01kq 1123 13 narrow narrow JJ cord-010027-r0tl01kq 1123 14 limit limit NN cord-010027-r0tl01kq 1123 15 of of IN cord-010027-r0tl01kq 1123 16 agreement agreement NN cord-010027-r0tl01kq 1123 17 . . . cord-010027-r0tl01kq 1124 1 The the DT cord-010027-r0tl01kq 1124 2 Ki-67 Ki-67 NNPS cord-010027-r0tl01kq 1124 3 PIs pi NNS cord-010027-r0tl01kq 1124 4 were be VBD cord-010027-r0tl01kq 1124 5 then then RB cord-010027-r0tl01kq 1124 6 translated translate VBN cord-010027-r0tl01kq 1124 7 into into IN cord-010027-r0tl01kq 1124 8 grades grade NNS cord-010027-r0tl01kq 1124 9 and and CC cord-010027-r0tl01kq 1124 10 similar similar JJ cord-010027-r0tl01kq 1124 11 comparisons comparison NNS cord-010027-r0tl01kq 1124 12 were be VBD cord-010027-r0tl01kq 1124 13 performed perform VBN cord-010027-r0tl01kq 1124 14 by by IN cord-010027-r0tl01kq 1124 15 calculating calculate VBG cord-010027-r0tl01kq 1124 16 the the DT cord-010027-r0tl01kq 1124 17 kappa kappa NN cord-010027-r0tl01kq 1124 18 score score NN cord-010027-r0tl01kq 1124 19 for for IN cord-010027-r0tl01kq 1124 20 categorical categorical JJ cord-010027-r0tl01kq 1124 21 variables variable NNS cord-010027-r0tl01kq 1124 22 . . . cord-010027-r0tl01kq 1125 1 Additionally additionally RB cord-010027-r0tl01kq 1125 2 , , , cord-010027-r0tl01kq 1125 3 the the DT cord-010027-r0tl01kq 1125 4 interobserver interobserver NN cord-010027-r0tl01kq 1125 5 variation variation NN cord-010027-r0tl01kq 1125 6 between between IN cord-010027-r0tl01kq 1125 7 the the DT cord-010027-r0tl01kq 1125 8 two two CD cord-010027-r0tl01kq 1125 9 independent independent JJ cord-010027-r0tl01kq 1125 10 researchers researcher NNS cord-010027-r0tl01kq 1125 11 were be VBD cord-010027-r0tl01kq 1125 12 calculated calculate VBN cord-010027-r0tl01kq 1125 13 . . . cord-010027-r0tl01kq 1126 1 Conclusion conclusion NN cord-010027-r0tl01kq 1126 2 : : : cord-010027-r0tl01kq 1127 1 Smaller small JJR cord-010027-r0tl01kq 1127 2 sample sample NN cord-010027-r0tl01kq 1127 3 sizes size NNS cord-010027-r0tl01kq 1127 4 ( ( -LRB- cord-010027-r0tl01kq 1127 5 below below IN cord-010027-r0tl01kq 1127 6 1000 1000 CD cord-010027-r0tl01kq 1127 7 ) ) -RRB- cord-010027-r0tl01kq 1127 8 tend tend VBP cord-010027-r0tl01kq 1127 9 to to TO cord-010027-r0tl01kq 1127 10 overestimate overestimate VB cord-010027-r0tl01kq 1127 11 the the DT cord-010027-r0tl01kq 1127 12 Ki-67 Ki-67 NNP cord-010027-r0tl01kq 1127 13 PIs pi NNS cord-010027-r0tl01kq 1127 14 , , , cord-010027-r0tl01kq 1127 15 possibly possibly RB cord-010027-r0tl01kq 1127 16 due due IN cord-010027-r0tl01kq 1127 17 to to IN cord-010027-r0tl01kq 1127 18 the the DT cord-010027-r0tl01kq 1127 19 effect effect NN cord-010027-r0tl01kq 1127 20 of of IN cord-010027-r0tl01kq 1127 21 concentric concentric JJ cord-010027-r0tl01kq 1127 22 counting counting NN cord-010027-r0tl01kq 1127 23 starting start VBG cord-010027-r0tl01kq 1127 24 from from IN cord-010027-r0tl01kq 1127 25 the the DT cord-010027-r0tl01kq 1127 26 center center NN cord-010027-r0tl01kq 1127 27 of of IN cord-010027-r0tl01kq 1127 28 the the DT cord-010027-r0tl01kq 1127 29 hotspot hotspot NN cord-010027-r0tl01kq 1127 30 . . . cord-010027-r0tl01kq 1128 1 However however RB cord-010027-r0tl01kq 1128 2 , , , cord-010027-r0tl01kq 1128 3 the the DT cord-010027-r0tl01kq 1128 4 Ki-67 Ki-67 NNP cord-010027-r0tl01kq 1128 5 PIs pi NNS cord-010027-r0tl01kq 1128 6 do do VBP cord-010027-r0tl01kq 1128 7 start start VB cord-010027-r0tl01kq 1128 8 to to TO cord-010027-r0tl01kq 1128 9 stabilise stabilise VB cord-010027-r0tl01kq 1128 10 closer close RBR cord-010027-r0tl01kq 1128 11 to to IN cord-010027-r0tl01kq 1128 12 2000 2000 CD cord-010027-r0tl01kq 1128 13 ( ( -LRB- cord-010027-r0tl01kq 1128 14 e.g. e.g. RB cord-010027-r0tl01kq 1128 15 1500 1500 CD cord-010027-r0tl01kq 1128 16 ) ) -RRB- cord-010027-r0tl01kq 1128 17 . . . cord-010027-r0tl01kq 1129 1 The the DT cord-010027-r0tl01kq 1129 2 interpretation interpretation NN cord-010027-r0tl01kq 1129 3 of of IN cord-010027-r0tl01kq 1129 4 whether whether IN cord-010027-r0tl01kq 1129 5 a a DT cord-010027-r0tl01kq 1129 6 lower low JJR cord-010027-r0tl01kq 1129 7 sample sample NN cord-010027-r0tl01kq 1129 8 size size NN cord-010027-r0tl01kq 1129 9 can can MD cord-010027-r0tl01kq 1129 10 replace replace VB cord-010027-r0tl01kq 1129 11 the the DT cord-010027-r0tl01kq 1129 12 current current JJ cord-010027-r0tl01kq 1129 13 standard standard NN cord-010027-r0tl01kq 1129 14 would would MD cord-010027-r0tl01kq 1129 15 be be VB cord-010027-r0tl01kq 1129 16 a a DT cord-010027-r0tl01kq 1129 17 subjective subjective JJ cord-010027-r0tl01kq 1129 18 decision decision NN cord-010027-r0tl01kq 1129 19 , , , cord-010027-r0tl01kq 1129 20 but but CC cord-010027-r0tl01kq 1129 21 the the DT cord-010027-r0tl01kq 1129 22 kappa kappa NN cord-010027-r0tl01kq 1129 23 score score NN cord-010027-r0tl01kq 1129 24 gives give VBZ cord-010027-r0tl01kq 1129 25 a a DT cord-010027-r0tl01kq 1129 26 rough rough JJ cord-010027-r0tl01kq 1129 27 idea idea NN cord-010027-r0tl01kq 1129 28 of of IN cord-010027-r0tl01kq 1129 29 how how WRB cord-010027-r0tl01kq 1129 30 much much JJ cord-010027-r0tl01kq 1129 31 it -PRON- PRP cord-010027-r0tl01kq 1129 32 affects affect VBZ cord-010027-r0tl01kq 1129 33 the the DT cord-010027-r0tl01kq 1129 34 clinical clinical JJ cord-010027-r0tl01kq 1129 35 grading grading NN cord-010027-r0tl01kq 1129 36 . . . cord-010027-r0tl01kq 1130 1 Updated update VBN cord-010027-r0tl01kq 1130 2 data datum NNS cord-010027-r0tl01kq 1130 3 will will MD cord-010027-r0tl01kq 1130 4 be be VB cord-010027-r0tl01kq 1130 5 presented present VBN cord-010027-r0tl01kq 1130 6 . . . cord-010027-r0tl01kq 1131 1 Purpose purpose NN cord-010027-r0tl01kq 1131 2 of of IN cord-010027-r0tl01kq 1131 3 the the DT cord-010027-r0tl01kq 1131 4 Study study NN cord-010027-r0tl01kq 1131 5 : : : cord-010027-r0tl01kq 1131 6 Targeting target VBG cord-010027-r0tl01kq 1131 7 the the DT cord-010027-r0tl01kq 1131 8 stem stem NN cord-010027-r0tl01kq 1131 9 cell cell NN cord-010027-r0tl01kq 1131 10 properties property NNS cord-010027-r0tl01kq 1131 11 of of IN cord-010027-r0tl01kq 1131 12 tumor tumor NN cord-010027-r0tl01kq 1131 13 - - HYPH cord-010027-r0tl01kq 1131 14 initiating initiate VBG cord-010027-r0tl01kq 1131 15 cells cell NNS cord-010027-r0tl01kq 1131 16 is be VBZ cord-010027-r0tl01kq 1131 17 an an DT cord-010027-r0tl01kq 1131 18 avenue avenue NN cord-010027-r0tl01kq 1131 19 through through IN cord-010027-r0tl01kq 1131 20 which which WDT cord-010027-r0tl01kq 1131 21 cancer cancer NN cord-010027-r0tl01kq 1131 22 treatment treatment NN cord-010027-r0tl01kq 1131 23 may may MD cord-010027-r0tl01kq 1131 24 be be VB cord-010027-r0tl01kq 1131 25 improved improve VBN cord-010027-r0tl01kq 1131 26 . . . cord-010027-r0tl01kq 1132 1 Before before IN cord-010027-r0tl01kq 1132 2 this this DT cord-010027-r0tl01kq 1132 3 can can MD cord-010027-r0tl01kq 1132 4 be be VB cord-010027-r0tl01kq 1132 5 achieved achieve VBN cord-010027-r0tl01kq 1132 6 , , , cord-010027-r0tl01kq 1132 7 so so RB cord-010027-r0tl01kq 1132 8 - - HYPH cord-010027-r0tl01kq 1132 9 called call VBN cord-010027-r0tl01kq 1132 10 cancer cancer NN cord-010027-r0tl01kq 1132 11 stem stem NN cord-010027-r0tl01kq 1132 12 cell cell NN cord-010027-r0tl01kq 1132 13 ( ( -LRB- cord-010027-r0tl01kq 1132 14 CSC CSC NNP cord-010027-r0tl01kq 1132 15 ) ) -RRB- cord-010027-r0tl01kq 1132 16 models model NNS cord-010027-r0tl01kq 1132 17 must must MD cord-010027-r0tl01kq 1132 18 be be VB cord-010027-r0tl01kq 1132 19 developed develop VBN cord-010027-r0tl01kq 1132 20 and and CC cord-010027-r0tl01kq 1132 21 characterized characterize VBN cord-010027-r0tl01kq 1132 22 in in IN cord-010027-r0tl01kq 1132 23 specific specific JJ cord-010027-r0tl01kq 1132 24 malignancies malignancy NNS cord-010027-r0tl01kq 1132 25 . . . cord-010027-r0tl01kq 1133 1 Methods method NNS cord-010027-r0tl01kq 1133 2 : : : cord-010027-r0tl01kq 1133 3 In in IN cord-010027-r0tl01kq 1133 4 this this DT cord-010027-r0tl01kq 1133 5 study study NN cord-010027-r0tl01kq 1133 6 , , , cord-010027-r0tl01kq 1133 7 holoclone holoclone NNP cord-010027-r0tl01kq 1133 8 formation formation NN cord-010027-r0tl01kq 1133 9 assays assay NNS cord-010027-r0tl01kq 1133 10 were be VBD cord-010027-r0tl01kq 1133 11 used use VBN cord-010027-r0tl01kq 1133 12 to to TO cord-010027-r0tl01kq 1133 13 characterize characterize VB cord-010027-r0tl01kq 1133 14 stem stem NN cord-010027-r0tl01kq 1133 15 - - HYPH cord-010027-r0tl01kq 1133 16 like like JJ cord-010027-r0tl01kq 1133 17 molecular molecular JJ cord-010027-r0tl01kq 1133 18 signatures signature NNS cord-010027-r0tl01kq 1133 19 for for IN cord-010027-r0tl01kq 1133 20 prostate prostate NN cord-010027-r0tl01kq 1133 21 cancer cancer NN cord-010027-r0tl01kq 1133 22 ( ( -LRB- cord-010027-r0tl01kq 1133 23 PCa pca NN cord-010027-r0tl01kq 1133 24 ) ) -RRB- cord-010027-r0tl01kq 1133 25 cells cell NNS cord-010027-r0tl01kq 1133 26 . . . cord-010027-r0tl01kq 1134 1 Summary summary NN cord-010027-r0tl01kq 1134 2 of of IN cord-010027-r0tl01kq 1134 3 Results result NNS cord-010027-r0tl01kq 1134 4 : : : cord-010027-r0tl01kq 1135 1 LNCaP LNCaP NNP cord-010027-r0tl01kq 1135 2 and and CC cord-010027-r0tl01kq 1135 3 PC3 PC3 NNP cord-010027-r0tl01kq 1135 4 parent parent NN cord-010027-r0tl01kq 1135 5 cells cell NNS cord-010027-r0tl01kq 1135 6 were be VBD cord-010027-r0tl01kq 1135 7 capable capable JJ cord-010027-r0tl01kq 1135 8 of of IN cord-010027-r0tl01kq 1135 9 responding respond VBG cord-010027-r0tl01kq 1135 10 to to TO cord-010027-r0tl01kq 1135 11 stem stem VB cord-010027-r0tl01kq 1135 12 cell cell NN cord-010027-r0tl01kq 1135 13 differentiation differentiation NN cord-010027-r0tl01kq 1135 14 morphogen morphogen IN cord-010027-r0tl01kq 1135 15 retinoic retinoic JJ cord-010027-r0tl01kq 1135 16 acid acid NN cord-010027-r0tl01kq 1135 17 ( ( -LRB- cord-010027-r0tl01kq 1135 18 RA RA NNP cord-010027-r0tl01kq 1135 19 ) ) -RRB- cord-010027-r0tl01kq 1135 20 , , , cord-010027-r0tl01kq 1135 21 suggesting suggest VBG cord-010027-r0tl01kq 1135 22 the the DT cord-010027-r0tl01kq 1135 23 presence presence NN cord-010027-r0tl01kq 1135 24 of of IN cord-010027-r0tl01kq 1135 25 inherent inherent JJ cord-010027-r0tl01kq 1135 26 stemlike stemlike NN cord-010027-r0tl01kq 1135 27 properties property NNS cord-010027-r0tl01kq 1135 28 . . . cord-010027-r0tl01kq 1136 1 LNCaP lncap NN cord-010027-r0tl01kq 1136 2 cells cell NNS cord-010027-r0tl01kq 1136 3 , , , cord-010027-r0tl01kq 1136 4 which which WDT cord-010027-r0tl01kq 1136 5 represent represent VBP cord-010027-r0tl01kq 1136 6 early early RB cord-010027-r0tl01kq 1136 7 , , , cord-010027-r0tl01kq 1136 8 androgen androgen NN cord-010027-r0tl01kq 1136 9 - - HYPH cord-010027-r0tl01kq 1136 10 responsive responsive JJ cord-010027-r0tl01kq 1136 11 disease disease NN cord-010027-r0tl01kq 1136 12 , , , cord-010027-r0tl01kq 1136 13 formed form VBD cord-010027-r0tl01kq 1136 14 holoclones holoclone NNS cord-010027-r0tl01kq 1136 15 after after IN cord-010027-r0tl01kq 1136 16 twenty twenty CD cord-010027-r0tl01kq 1136 17 six six CD cord-010027-r0tl01kq 1136 18 days day NNS cord-010027-r0tl01kq 1136 19 . . . cord-010027-r0tl01kq 1137 1 PC3 PC3 NNP cord-010027-r0tl01kq 1137 2 cells cell NNS cord-010027-r0tl01kq 1137 3 , , , cord-010027-r0tl01kq 1137 4 which which WDT cord-010027-r0tl01kq 1137 5 represent represent VBP cord-010027-r0tl01kq 1137 6 advanced advanced JJ cord-010027-r0tl01kq 1137 7 , , , cord-010027-r0tl01kq 1137 8 metastatic metastatic JJ cord-010027-r0tl01kq 1137 9 , , , cord-010027-r0tl01kq 1137 10 castrationresistant castrationresistant JJ cord-010027-r0tl01kq 1137 11 disease disease NN cord-010027-r0tl01kq 1137 12 , , , cord-010027-r0tl01kq 1137 13 formed form VBD cord-010027-r0tl01kq 1137 14 holoclones holoclone NNS cord-010027-r0tl01kq 1137 15 after after IN cord-010027-r0tl01kq 1137 16 only only RB cord-010027-r0tl01kq 1137 17 six six CD cord-010027-r0tl01kq 1137 18 days day NNS cord-010027-r0tl01kq 1137 19 . . . cord-010027-r0tl01kq 1138 1 Holoclones holoclone NNS cord-010027-r0tl01kq 1138 2 displayed display VBD cord-010027-r0tl01kq 1138 3 decreased decrease VBN cord-010027-r0tl01kq 1138 4 expression expression NN cord-010027-r0tl01kq 1138 5 of of IN cord-010027-r0tl01kq 1138 6 RA RA NNP cord-010027-r0tl01kq 1138 7 - - HYPH cord-010027-r0tl01kq 1138 8 genes gene NNS cord-010027-r0tl01kq 1138 9 , , , cord-010027-r0tl01kq 1138 10 suggesting suggest VBG cord-010027-r0tl01kq 1138 11 a a DT cord-010027-r0tl01kq 1138 12 more more RBR cord-010027-r0tl01kq 1138 13 immature immature JJ cord-010027-r0tl01kq 1138 14 , , , cord-010027-r0tl01kq 1138 15 less less RBR cord-010027-r0tl01kq 1138 16 differentiated differentiated JJ cord-010027-r0tl01kq 1138 17 phenotype phenotype NN cord-010027-r0tl01kq 1138 18 . . . cord-010027-r0tl01kq 1139 1 Gene Gene NNP cord-010027-r0tl01kq 1139 2 and and CC cord-010027-r0tl01kq 1139 3 mircoRNA mircoRNA NNP cord-010027-r0tl01kq 1139 4 arrays array NNS cord-010027-r0tl01kq 1139 5 demonstrated demonstrate VBD cord-010027-r0tl01kq 1139 6 that that IN cord-010027-r0tl01kq 1139 7 holoclones holoclone NNS cord-010027-r0tl01kq 1139 8 downregulated downregulate VBD cord-010027-r0tl01kq 1139 9 a a DT cord-010027-r0tl01kq 1139 10 number number NN cord-010027-r0tl01kq 1139 11 of of IN cord-010027-r0tl01kq 1139 12 stem stem NN cord-010027-r0tl01kq 1139 13 cell cell NN cord-010027-r0tl01kq 1139 14 differentiation differentiation NN cord-010027-r0tl01kq 1139 15 regulators regulator NNS cord-010027-r0tl01kq 1139 16 while while IN cord-010027-r0tl01kq 1139 17 displaying display VBG cord-010027-r0tl01kq 1139 18 enhanced enhanced JJ cord-010027-r0tl01kq 1139 19 regulation regulation NN cord-010027-r0tl01kq 1139 20 of of IN cord-010027-r0tl01kq 1139 21 G2 G2 NNP cord-010027-r0tl01kq 1139 22 to to IN cord-010027-r0tl01kq 1139 23 M M NNP cord-010027-r0tl01kq 1139 24 transition transition NN cord-010027-r0tl01kq 1139 25 and and CC cord-010027-r0tl01kq 1139 26 the the DT cord-010027-r0tl01kq 1139 27 mitotic mitotic JJ cord-010027-r0tl01kq 1139 28 spindle spindle NN cord-010027-r0tl01kq 1139 29 checkpoint checkpoint NN cord-010027-r0tl01kq 1139 30 components component NNS cord-010027-r0tl01kq 1139 31 of of IN cord-010027-r0tl01kq 1139 32 the the DT cord-010027-r0tl01kq 1139 33 cell cell NN cord-010027-r0tl01kq 1139 34 cycle cycle NN cord-010027-r0tl01kq 1139 35 . . . cord-010027-r0tl01kq 1140 1 PC3 PC3 NNP cord-010027-r0tl01kq 1140 2 holoclones holoclones NNP cord-010027-r0tl01kq 1140 3 displayed display VBD cord-010027-r0tl01kq 1140 4 pronounced pronounce VBN cord-010027-r0tl01kq 1140 5 downregulation downregulation NN cord-010027-r0tl01kq 1140 6 of of IN cord-010027-r0tl01kq 1140 7 known know VBN cord-010027-r0tl01kq 1140 8 regulators regulator NNS cord-010027-r0tl01kq 1140 9 of of IN cord-010027-r0tl01kq 1140 10 osteoblast osteoblast JJ cord-010027-r0tl01kq 1140 11 differentiation differentiation NN cord-010027-r0tl01kq 1140 12 from from IN cord-010027-r0tl01kq 1140 13 mesenchymal mesenchymal JJ cord-010027-r0tl01kq 1140 14 stem stem NN cord-010027-r0tl01kq 1140 15 cells cell NNS cord-010027-r0tl01kq 1140 16 and and CC cord-010027-r0tl01kq 1140 17 Epithelial Epithelial NNP cord-010027-r0tl01kq 1140 18 Mesenchymal Mesenchymal NNP cord-010027-r0tl01kq 1140 19 Transition Transition NNP cord-010027-r0tl01kq 1140 20 . . . cord-010027-r0tl01kq 1141 1 Conclusion conclusion NN cord-010027-r0tl01kq 1141 2 : : : cord-010027-r0tl01kq 1142 1 Our -PRON- PRP$ cord-010027-r0tl01kq 1142 2 results result NNS cord-010027-r0tl01kq 1142 3 suggest suggest VBP cord-010027-r0tl01kq 1142 4 that that IN cord-010027-r0tl01kq 1142 5 some some DT cord-010027-r0tl01kq 1142 6 PCa pca NN cord-010027-r0tl01kq 1142 7 cells cell NNS cord-010027-r0tl01kq 1142 8 retain retain VBP cord-010027-r0tl01kq 1142 9 the the DT cord-010027-r0tl01kq 1142 10 ability ability NN cord-010027-r0tl01kq 1142 11 to to TO cord-010027-r0tl01kq 1142 12 transition transition VB cord-010027-r0tl01kq 1142 13 to to IN cord-010027-r0tl01kq 1142 14 a a DT cord-010027-r0tl01kq 1142 15 more more RBR cord-010027-r0tl01kq 1142 16 immature immature JJ cord-010027-r0tl01kq 1142 17 state state NN cord-010027-r0tl01kq 1142 18 in in IN cord-010027-r0tl01kq 1142 19 which which WDT cord-010027-r0tl01kq 1142 20 differentiation differentiation NN cord-010027-r0tl01kq 1142 21 and and CC cord-010027-r0tl01kq 1142 22 metastatic metastatic JJ cord-010027-r0tl01kq 1142 23 mechanisms mechanism NNS cord-010027-r0tl01kq 1142 24 are be VBP cord-010027-r0tl01kq 1142 25 changed change VBN cord-010027-r0tl01kq 1142 26 . . . cord-010027-r0tl01kq 1143 1 The the DT cord-010027-r0tl01kq 1143 2 highlighting highlighting NN cord-010027-r0tl01kq 1143 3 of of IN cord-010027-r0tl01kq 1143 4 osteoblast osteoblast JJ cord-010027-r0tl01kq 1143 5 differentiation differentiation NN cord-010027-r0tl01kq 1143 6 regulators regulator NNS cord-010027-r0tl01kq 1143 7 in in IN cord-010027-r0tl01kq 1143 8 this this DT cord-010027-r0tl01kq 1143 9 mechanism mechanism NN cord-010027-r0tl01kq 1143 10 is be VBZ cord-010027-r0tl01kq 1143 11 particularly particularly RB cord-010027-r0tl01kq 1143 12 notable notable JJ cord-010027-r0tl01kq 1143 13 , , , cord-010027-r0tl01kq 1143 14 considering consider VBG cord-010027-r0tl01kq 1143 15 the the DT cord-010027-r0tl01kq 1143 16 propensity propensity NN cord-010027-r0tl01kq 1143 17 of of IN cord-010027-r0tl01kq 1143 18 PCa pca NN cord-010027-r0tl01kq 1143 19 to to TO cord-010027-r0tl01kq 1143 20 metastasize metastasize VB cord-010027-r0tl01kq 1143 21 to to IN cord-010027-r0tl01kq 1143 22 bone bone NN cord-010027-r0tl01kq 1143 23 . . . cord-010027-r0tl01kq 1144 1 We -PRON- PRP cord-010027-r0tl01kq 1144 2 examined examine VBD cord-010027-r0tl01kq 1144 3 by by IN cord-010027-r0tl01kq 1144 4 flow flow NN cord-010027-r0tl01kq 1144 5 cytometetry cytometetry NNP cord-010027-r0tl01kq 1144 6 the the DT cord-010027-r0tl01kq 1144 7 interaction interaction NN cord-010027-r0tl01kq 1144 8 in in IN cord-010027-r0tl01kq 1144 9 vitro vitro FW cord-010027-r0tl01kq 1144 10 between between IN cord-010027-r0tl01kq 1144 11 platelets platelet NNS cord-010027-r0tl01kq 1144 12 and and CC cord-010027-r0tl01kq 1144 13 15 15 CD cord-010027-r0tl01kq 1144 14 human human JJ cord-010027-r0tl01kq 1144 15 cancer cancer NN cord-010027-r0tl01kq 1144 16 cell cell NN cord-010027-r0tl01kq 1144 17 lines line NNS cord-010027-r0tl01kq 1144 18 of of IN cord-010027-r0tl01kq 1144 19 different different JJ cord-010027-r0tl01kq 1144 20 origin origin NN cord-010027-r0tl01kq 1144 21 and and CC cord-010027-r0tl01kq 1144 22 metastatic metastatic JJ cord-010027-r0tl01kq 1144 23 potential potential NN cord-010027-r0tl01kq 1144 24 . . . cord-010027-r0tl01kq 1145 1 The the DT cord-010027-r0tl01kq 1145 2 EMT EMT NNP cord-010027-r0tl01kq 1145 3 profile profile NN cord-010027-r0tl01kq 1145 4 of of IN cord-010027-r0tl01kq 1145 5 cells cell NNS cord-010027-r0tl01kq 1145 6 24hr 24hr JJ cord-010027-r0tl01kq 1145 7 post post NN cord-010027-r0tl01kq 1145 8 platelet platelet NN cord-010027-r0tl01kq 1145 9 exposure exposure NN cord-010027-r0tl01kq 1145 10 was be VBD cord-010027-r0tl01kq 1145 11 assessed assess VBN cord-010027-r0tl01kq 1145 12 by by IN cord-010027-r0tl01kq 1145 13 morphology morphology NN cord-010027-r0tl01kq 1145 14 and and CC cord-010027-r0tl01kq 1145 15 gene gene NN cord-010027-r0tl01kq 1145 16 expression expression NN cord-010027-r0tl01kq 1145 17 analysis analysis NN cord-010027-r0tl01kq 1145 18 ( ( -LRB- cord-010027-r0tl01kq 1145 19 RT RT NNP cord-010027-r0tl01kq 1145 20 - - HYPH cord-010027-r0tl01kq 1145 21 PCR PCR NNP cord-010027-r0tl01kq 1145 22 ) ) -RRB- cord-010027-r0tl01kq 1145 23 . . . cord-010027-r0tl01kq 1146 1 Here here RB cord-010027-r0tl01kq 1146 2 we -PRON- PRP cord-010027-r0tl01kq 1146 3 showed show VBD cord-010027-r0tl01kq 1146 4 that that IN cord-010027-r0tl01kq 1146 5 platelet platelet NN cord-010027-r0tl01kq 1146 6 cloaking cloaking NN cord-010027-r0tl01kq 1146 7 of of IN cord-010027-r0tl01kq 1146 8 cancer cancer NN cord-010027-r0tl01kq 1146 9 cells cell NNS cord-010027-r0tl01kq 1146 10 is be VBZ cord-010027-r0tl01kq 1146 11 universal universal JJ cord-010027-r0tl01kq 1146 12 , , , cord-010027-r0tl01kq 1146 13 occurring occur VBG cord-010027-r0tl01kq 1146 14 across across IN cord-010027-r0tl01kq 1146 15 all all DT cord-010027-r0tl01kq 1146 16 7 7 CD cord-010027-r0tl01kq 1146 17 tumour tumour NN cord-010027-r0tl01kq 1146 18 types type NNS cord-010027-r0tl01kq 1146 19 examined examine VBD cord-010027-r0tl01kq 1146 20 . . . cord-010027-r0tl01kq 1147 1 However however RB cord-010027-r0tl01kq 1147 2 , , , cord-010027-r0tl01kq 1147 3 it -PRON- PRP cord-010027-r0tl01kq 1147 4 is be VBZ cord-010027-r0tl01kq 1147 5 heterogeneous heterogeneous JJ cord-010027-r0tl01kq 1147 6 with with IN cord-010027-r0tl01kq 1147 7 adhesion adhesion NN cord-010027-r0tl01kq 1147 8 rates rate NNS cord-010027-r0tl01kq 1147 9 varying vary VBG cord-010027-r0tl01kq 1147 10 both both CC cord-010027-r0tl01kq 1147 11 across across IN cord-010027-r0tl01kq 1147 12 and and CC cord-010027-r0tl01kq 1147 13 within within IN cord-010027-r0tl01kq 1147 14 tumour tumour NN cord-010027-r0tl01kq 1147 15 types type NNS cord-010027-r0tl01kq 1147 16 , , , cord-010027-r0tl01kq 1147 17 from from IN cord-010027-r0tl01kq 1147 18 35 35 CD cord-010027-r0tl01kq 1147 19 % % NN cord-010027-r0tl01kq 1147 20 ( ( -LRB- cord-010027-r0tl01kq 1147 21 PC3-metastatic pc3-metastatic JJ cord-010027-r0tl01kq 1147 22 prostate prostate NN cord-010027-r0tl01kq 1147 23 cancer cancer NN cord-010027-r0tl01kq 1147 24 ) ) -RRB- cord-010027-r0tl01kq 1147 25 to to IN cord-010027-r0tl01kq 1147 26 83 83 CD cord-010027-r0tl01kq 1147 27 % % NN cord-010027-r0tl01kq 1147 28 ( ( -LRB- cord-010027-r0tl01kq 1147 29 SKMES1-metastatic SKMES1-metastatic NNP cord-010027-r0tl01kq 1147 30 lung lung NN cord-010027-r0tl01kq 1147 31 cancer cancer NN cord-010027-r0tl01kq 1147 32 ) ) -RRB- cord-010027-r0tl01kq 1147 33 . . . cord-010027-r0tl01kq 1148 1 Changes change NNS cord-010027-r0tl01kq 1148 2 indicative indicative JJ cord-010027-r0tl01kq 1148 3 of of IN cord-010027-r0tl01kq 1148 4 EMT EMT NNP cord-010027-r0tl01kq 1148 5 were be VBD cord-010027-r0tl01kq 1148 6 seen see VBN cord-010027-r0tl01kq 1148 7 in in IN cord-010027-r0tl01kq 1148 8 all all DT cord-010027-r0tl01kq 1148 9 cell cell NN cord-010027-r0tl01kq 1148 10 lines line NNS cord-010027-r0tl01kq 1148 11 . . . cord-010027-r0tl01kq 1149 1 However however RB cord-010027-r0tl01kq 1149 2 , , , cord-010027-r0tl01kq 1149 3 again again RB cord-010027-r0tl01kq 1149 4 they -PRON- PRP cord-010027-r0tl01kq 1149 5 were be VBD cord-010027-r0tl01kq 1149 6 heterogeneous heterogeneous JJ cord-010027-r0tl01kq 1149 7 in in IN cord-010027-r0tl01kq 1149 8 nature nature NN cord-010027-r0tl01kq 1149 9 ; ; : cord-010027-r0tl01kq 1149 10 with with IN cord-010027-r0tl01kq 1149 11 morphology morphology NN cord-010027-r0tl01kq 1149 12 changes change NNS cord-010027-r0tl01kq 1149 13 akin akin JJ cord-010027-r0tl01kq 1149 14 to to IN cord-010027-r0tl01kq 1149 15 EMT EMT NNP cord-010027-r0tl01kq 1149 16 observed observe VBD cord-010027-r0tl01kq 1149 17 at at IN cord-010027-r0tl01kq 1149 18 varying vary VBG cord-010027-r0tl01kq 1149 19 degrees degree NNS cord-010027-r0tl01kq 1149 20 across across IN cord-010027-r0tl01kq 1149 21 the the DT cord-010027-r0tl01kq 1149 22 cancer cancer NN cord-010027-r0tl01kq 1149 23 types type NNS cord-010027-r0tl01kq 1149 24 . . . cord-010027-r0tl01kq 1150 1 Also also RB cord-010027-r0tl01kq 1150 2 , , , cord-010027-r0tl01kq 1150 3 there there EX cord-010027-r0tl01kq 1150 4 was be VBD cord-010027-r0tl01kq 1150 5 no no DT cord-010027-r0tl01kq 1150 6 consistent consistent JJ cord-010027-r0tl01kq 1150 7 pattern pattern NN cord-010027-r0tl01kq 1150 8 to to IN cord-010027-r0tl01kq 1150 9 the the DT cord-010027-r0tl01kq 1150 10 EMT EMT NNP cord-010027-r0tl01kq 1150 11 - - HYPH cord-010027-r0tl01kq 1150 12 like like JJ cord-010027-r0tl01kq 1150 13 gene gene NN cord-010027-r0tl01kq 1150 14 expression expression NN cord-010027-r0tl01kq 1150 15 changes change NNS cord-010027-r0tl01kq 1150 16 seen see VBN cord-010027-r0tl01kq 1150 17 , , , cord-010027-r0tl01kq 1150 18 with with IN cord-010027-r0tl01kq 1150 19 one one CD cord-010027-r0tl01kq 1150 20 exception exception NN cord-010027-r0tl01kq 1150 21 a a DT cord-010027-r0tl01kq 1150 22 significant significant JJ cord-010027-r0tl01kq 1150 23 increase increase NN cord-010027-r0tl01kq 1150 24 in in IN cord-010027-r0tl01kq 1150 25 the the DT cord-010027-r0tl01kq 1150 26 expression expression NN cord-010027-r0tl01kq 1150 27 of of IN cord-010027-r0tl01kq 1150 28 plasminogen plasminogen NN cord-010027-r0tl01kq 1150 29 activator activator NN cord-010027-r0tl01kq 1150 30 inhibitor inhibitor NN cord-010027-r0tl01kq 1150 31 1 1 CD cord-010027-r0tl01kq 1151 1 ( ( -LRB- cord-010027-r0tl01kq 1151 2 PAI-1)was PAI-1)was NNP cord-010027-r0tl01kq 1151 3 observed observe VBN cord-010027-r0tl01kq 1151 4 in in IN cord-010027-r0tl01kq 1151 5 93 93 CD cord-010027-r0tl01kq 1151 6 % % NN cord-010027-r0tl01kq 1151 7 of of IN cord-010027-r0tl01kq 1151 8 the the DT cord-010027-r0tl01kq 1151 9 cell cell NN cord-010027-r0tl01kq 1151 10 lines line NNS cord-010027-r0tl01kq 1151 11 examined examine VBN cord-010027-r0tl01kq 1151 12 . . . cord-010027-r0tl01kq 1152 1 In in IN cord-010027-r0tl01kq 1152 2 this this DT cord-010027-r0tl01kq 1152 3 study study NN cord-010027-r0tl01kq 1152 4 we -PRON- PRP cord-010027-r0tl01kq 1152 5 describe describe VBP cord-010027-r0tl01kq 1152 6 the the DT cord-010027-r0tl01kq 1152 7 universal universal JJ cord-010027-r0tl01kq 1152 8 nature nature NN cord-010027-r0tl01kq 1152 9 of of IN cord-010027-r0tl01kq 1152 10 platelet platelet NN cord-010027-r0tl01kq 1152 11 cloaking cloaking NN cord-010027-r0tl01kq 1152 12 and and CC cord-010027-r0tl01kq 1152 13 that that IN cord-010027-r0tl01kq 1152 14 even even RB cord-010027-r0tl01kq 1152 15 though though IN cord-010027-r0tl01kq 1152 16 the the DT cord-010027-r0tl01kq 1152 17 interaction interaction NN cord-010027-r0tl01kq 1152 18 is be VBZ cord-010027-r0tl01kq 1152 19 not not RB cord-010027-r0tl01kq 1152 20 inducing induce VBG cord-010027-r0tl01kq 1152 21 precisely precisely RB cord-010027-r0tl01kq 1152 22 the the DT cord-010027-r0tl01kq 1152 23 same same JJ cord-010027-r0tl01kq 1152 24 molecular molecular JJ cord-010027-r0tl01kq 1152 25 changes change NNS cord-010027-r0tl01kq 1152 26 in in IN cord-010027-r0tl01kq 1152 27 all all PDT cord-010027-r0tl01kq 1152 28 the the DT cord-010027-r0tl01kq 1152 29 cancer cancer NN cord-010027-r0tl01kq 1152 30 cells cell NNS cord-010027-r0tl01kq 1152 31 ; ; : cord-010027-r0tl01kq 1152 32 overall overall RB cord-010027-r0tl01kq 1152 33 it -PRON- PRP cord-010027-r0tl01kq 1152 34 is be VBZ cord-010027-r0tl01kq 1152 35 driving drive VBG cord-010027-r0tl01kq 1152 36 these these DT cord-010027-r0tl01kq 1152 37 cells cell NNS cord-010027-r0tl01kq 1152 38 into into IN cord-010027-r0tl01kq 1152 39 a a DT cord-010027-r0tl01kq 1152 40 mesenchymal mesenchymal JJ cord-010027-r0tl01kq 1152 41 phenotype phenotype NN cord-010027-r0tl01kq 1152 42 . . . cord-010027-r0tl01kq 1153 1 Giant giant JJ cord-010027-r0tl01kq 1153 2 cell cell NN cord-010027-r0tl01kq 1153 3 tumours tumour NNS cord-010027-r0tl01kq 1153 4 of of IN cord-010027-r0tl01kq 1153 5 bone bone NN cord-010027-r0tl01kq 1153 6 ( ( -LRB- cord-010027-r0tl01kq 1153 7 GCT GCT NNP cord-010027-r0tl01kq 1153 8 ) ) -RRB- cord-010027-r0tl01kq 1153 9 are be VBP cord-010027-r0tl01kq 1153 10 primary primary JJ cord-010027-r0tl01kq 1153 11 locally locally RB cord-010027-r0tl01kq 1153 12 aggressive aggressive JJ cord-010027-r0tl01kq 1153 13 bone bone NN cord-010027-r0tl01kq 1153 14 tumours tumour NNS cord-010027-r0tl01kq 1153 15 with with IN cord-010027-r0tl01kq 1153 16 a a DT cord-010027-r0tl01kq 1153 17 recurrence recurrence NN cord-010027-r0tl01kq 1153 18 rate rate NN cord-010027-r0tl01kq 1153 19 of of IN cord-010027-r0tl01kq 1153 20 up up IN cord-010027-r0tl01kq 1153 21 to to TO cord-010027-r0tl01kq 1153 22 ~30 ~30 CD cord-010027-r0tl01kq 1153 23 % % NN cord-010027-r0tl01kq 1153 24 . . . cord-010027-r0tl01kq 1154 1 The the DT cord-010027-r0tl01kq 1154 2 tumour tumour NN cord-010027-r0tl01kq 1154 3 is be VBZ cord-010027-r0tl01kq 1154 4 characterised characterise VBN cord-010027-r0tl01kq 1154 5 by by IN cord-010027-r0tl01kq 1154 6 numerous numerous JJ cord-010027-r0tl01kq 1154 7 osteoclasts osteoclast NNS cord-010027-r0tl01kq 1154 8 and and CC cord-010027-r0tl01kq 1154 9 neoplastic neoplastic JJ cord-010027-r0tl01kq 1154 10 stromal stromal JJ cord-010027-r0tl01kq 1154 11 cells cell NNS cord-010027-r0tl01kq 1154 12 . . . cord-010027-r0tl01kq 1155 1 Making make VBG cord-010027-r0tl01kq 1155 2 a a DT cord-010027-r0tl01kq 1155 3 diagnosis diagnosis NN cord-010027-r0tl01kq 1155 4 can can MD cord-010027-r0tl01kq 1155 5 be be VB cord-010027-r0tl01kq 1155 6 challenging challenging JJ cord-010027-r0tl01kq 1155 7 because because IN cord-010027-r0tl01kq 1155 8 the the DT cord-010027-r0tl01kq 1155 9 differential differential JJ cord-010027-r0tl01kq 1155 10 diagnosis diagnosis NN cord-010027-r0tl01kq 1155 11 incudes incude VBZ cord-010027-r0tl01kq 1155 12 an an DT cord-010027-r0tl01kq 1155 13 array array NN cord-010027-r0tl01kq 1155 14 of of IN cord-010027-r0tl01kq 1155 15 benign benign JJ cord-010027-r0tl01kq 1155 16 osteoclast osteoclast JJ cord-010027-r0tl01kq 1155 17 - - HYPH cord-010027-r0tl01kq 1155 18 rich rich JJ cord-010027-r0tl01kq 1155 19 tumours tumour NNS cord-010027-r0tl01kq 1155 20 but but CC cord-010027-r0tl01kq 1155 21 also also RB cord-010027-r0tl01kq 1155 22 osteoclast osteoclast NN cord-010027-r0tl01kq 1155 23 - - HYPH cord-010027-r0tl01kq 1155 24 rich rich JJ cord-010027-r0tl01kq 1155 25 osteosarcoma osteosarcoma NN cord-010027-r0tl01kq 1155 26 . . . cord-010027-r0tl01kq 1156 1 Recently recently RB cord-010027-r0tl01kq 1156 2 the the DT cord-010027-r0tl01kq 1156 3 occurrence occurrence NN cord-010027-r0tl01kq 1156 4 of of IN cord-010027-r0tl01kq 1156 5 H3F3A H3F3A NNP cord-010027-r0tl01kq 1156 6 p. p. NN cord-010027-r0tl01kq 1157 1 Gly34Try Gly34Try NNP cord-010027-r0tl01kq 1157 2 ( ( -LRB- cord-010027-r0tl01kq 1157 3 G34W G34W NNP cord-010027-r0tl01kq 1157 4 ) ) -RRB- cord-010027-r0tl01kq 1158 1 and and CC cord-010027-r0tl01kq 1158 2 G34L g34l NN cord-010027-r0tl01kq 1158 3 mutations mutation NNS cord-010027-r0tl01kq 1158 4 was be VBD cord-010027-r0tl01kq 1158 5 reported report VBN cord-010027-r0tl01kq 1158 6 in in IN cord-010027-r0tl01kq 1158 7 96 96 CD cord-010027-r0tl01kq 1158 8 % % NN cord-010027-r0tl01kq 1158 9 of of IN cord-010027-r0tl01kq 1158 10 GCT GCT NNP cord-010027-r0tl01kq 1158 11 , , , cord-010027-r0tl01kq 1158 12 the the DT cord-010027-r0tl01kq 1158 13 latter latter JJ cord-010027-r0tl01kq 1158 14 occurring occur VBG cord-010027-r0tl01kq 1158 15 rarely rarely RB cord-010027-r0tl01kq 1158 16 . . . cord-010027-r0tl01kq 1159 1 These these DT cord-010027-r0tl01kq 1159 2 mutations mutation NNS cord-010027-r0tl01kq 1159 3 occur occur VBP cord-010027-r0tl01kq 1159 4 in in IN cord-010027-r0tl01kq 1159 5 less less JJR cord-010027-r0tl01kq 1159 6 than than IN cord-010027-r0tl01kq 1159 7 2 2 CD cord-010027-r0tl01kq 1159 8 % % NN cord-010027-r0tl01kq 1159 9 of of IN cord-010027-r0tl01kq 1159 10 > > $ cord-010027-r0tl01kq 1159 11 400 400 CD cord-010027-r0tl01kq 1159 12 other other JJ cord-010027-r0tl01kq 1159 13 benign benign JJ cord-010027-r0tl01kq 1159 14 and and CC cord-010027-r0tl01kq 1159 15 malignant malignant JJ cord-010027-r0tl01kq 1159 16 bone bone NN cord-010027-r0tl01kq 1159 17 tumours tumour NNS cord-010027-r0tl01kq 1159 18 . . . cord-010027-r0tl01kq 1160 1 It -PRON- PRP cord-010027-r0tl01kq 1160 2 has have VBZ cord-010027-r0tl01kq 1160 3 been be VBN cord-010027-r0tl01kq 1160 4 emphasised emphasise VBN cord-010027-r0tl01kq 1160 5 that that IN cord-010027-r0tl01kq 1160 6 a a DT cord-010027-r0tl01kq 1160 7 diagnosis diagnosis NN cord-010027-r0tl01kq 1160 8 of of IN cord-010027-r0tl01kq 1160 9 GCT GCT NNP cord-010027-r0tl01kq 1160 10 should should MD cord-010027-r0tl01kq 1160 11 be be VB cord-010027-r0tl01kq 1160 12 made make VBN cord-010027-r0tl01kq 1160 13 with with IN cord-010027-r0tl01kq 1160 14 caution caution NN cord-010027-r0tl01kq 1160 15 in in IN cord-010027-r0tl01kq 1160 16 the the DT cord-010027-r0tl01kq 1160 17 absence absence NN cord-010027-r0tl01kq 1160 18 of of IN cord-010027-r0tl01kq 1160 19 detection detection NN cord-010027-r0tl01kq 1160 20 of of IN cord-010027-r0tl01kq 1160 21 G34W G34W NNP cord-010027-r0tl01kq 1160 22 substitution substitution NN cord-010027-r0tl01kq 1160 23 . . . cord-010027-r0tl01kq 1161 1 Given give VBN cord-010027-r0tl01kq 1161 2 the the DT cord-010027-r0tl01kq 1161 3 diagnostic diagnostic JJ cord-010027-r0tl01kq 1161 4 importance importance NN cord-010027-r0tl01kq 1161 5 of of IN cord-010027-r0tl01kq 1161 6 G34W G34W NNP cord-010027-r0tl01kq 1161 7 mutation mutation NN cord-010027-r0tl01kq 1161 8 in in IN cord-010027-r0tl01kq 1161 9 GCT GCT NNP cord-010027-r0tl01kq 1161 10 , , , cord-010027-r0tl01kq 1161 11 we -PRON- PRP cord-010027-r0tl01kq 1161 12 have have VBP cord-010027-r0tl01kq 1161 13 developed develop VBN cord-010027-r0tl01kq 1161 14 a a DT cord-010027-r0tl01kq 1161 15 simple simple JJ cord-010027-r0tl01kq 1161 16 , , , cord-010027-r0tl01kq 1161 17 quick quick JJ cord-010027-r0tl01kq 1161 18 and and CC cord-010027-r0tl01kq 1161 19 cost cost VB cord-010027-r0tl01kq 1161 20 - - HYPH cord-010027-r0tl01kq 1161 21 efficient efficient JJ cord-010027-r0tl01kq 1161 22 diagnostic diagnostic JJ cord-010027-r0tl01kq 1161 23 test test NN cord-010027-r0tl01kq 1161 24 to to TO cord-010027-r0tl01kq 1161 25 detect detect VB cord-010027-r0tl01kq 1161 26 this this DT cord-010027-r0tl01kq 1161 27 recurrent recurrent JJ cord-010027-r0tl01kq 1161 28 alteration alteration NN cord-010027-r0tl01kq 1161 29 in in IN cord-010027-r0tl01kq 1161 30 FFPE FFPE NNP cord-010027-r0tl01kq 1161 31 DNA DNA NNP cord-010027-r0tl01kq 1161 32 using use VBG cord-010027-r0tl01kq 1161 33 droplet droplet NN cord-010027-r0tl01kq 1161 34 digital digital JJ cord-010027-r0tl01kq 1161 35 PCR PCR NNP cord-010027-r0tl01kq 1161 36 ( ( -LRB- cord-010027-r0tl01kq 1161 37 ddPCR ddPCR NNP cord-010027-r0tl01kq 1161 38 ) ) -RRB- cord-010027-r0tl01kq 1161 39 . . . cord-010027-r0tl01kq 1162 1 The the DT cord-010027-r0tl01kq 1162 2 ddPCR ddPCR NNP cord-010027-r0tl01kq 1162 3 data datum NNS cord-010027-r0tl01kq 1162 4 from from IN cord-010027-r0tl01kq 1162 5 DNA DNA NNP cord-010027-r0tl01kq 1162 6 of of IN cord-010027-r0tl01kq 1162 7 > > XX cord-010027-r0tl01kq 1162 8 100 100 CD cord-010027-r0tl01kq 1162 9 GCT GCT NNP cord-010027-r0tl01kq 1162 10 have have VBP cord-010027-r0tl01kq 1162 11 been be VBN cord-010027-r0tl01kq 1162 12 compared compare VBN cord-010027-r0tl01kq 1162 13 with with IN cord-010027-r0tl01kq 1162 14 previous previous JJ cord-010027-r0tl01kq 1162 15 ' ' `` cord-010027-r0tl01kq 1162 16 genotype genotype NN cord-010027-r0tl01kq 1162 17 ' ' '' cord-010027-r0tl01kq 1162 18 data datum NNS cord-010027-r0tl01kq 1162 19 generated generate VBN cord-010027-r0tl01kq 1162 20 using use VBG cord-010027-r0tl01kq 1162 21 Sanger Sanger NNP cord-010027-r0tl01kq 1162 22 sequencing sequencing NN cord-010027-r0tl01kq 1162 23 , , , cord-010027-r0tl01kq 1162 24 and and CC cord-010027-r0tl01kq 1162 25 a a DT cord-010027-r0tl01kq 1162 26 number number NN cord-010027-r0tl01kq 1162 27 of of IN cord-010027-r0tl01kq 1162 28 next next JJ cord-010027-r0tl01kq 1162 29 generation generation NN cord-010027-r0tl01kq 1162 30 sequencing sequencing NN cord-010027-r0tl01kq 1162 31 approaches approach NNS cord-010027-r0tl01kq 1162 32 ( ( -LRB- cord-010027-r0tl01kq 1162 33 whole whole JJ cord-010027-r0tl01kq 1162 34 exome exome NN cord-010027-r0tl01kq 1162 35 , , , cord-010027-r0tl01kq 1162 36 whole whole JJ cord-010027-r0tl01kq 1162 37 genome genome NN cord-010027-r0tl01kq 1162 38 and and CC cord-010027-r0tl01kq 1162 39 targeted target VBN cord-010027-r0tl01kq 1162 40 panels panel NNS cord-010027-r0tl01kq 1162 41 ) ) -RRB- cord-010027-r0tl01kq 1162 42 . . . cord-010027-r0tl01kq 1163 1 The the DT cord-010027-r0tl01kq 1163 2 G34W G34W NNS cord-010027-r0tl01kq 1163 3 and and CC cord-010027-r0tl01kq 1163 4 G34L G34L NNS cord-010027-r0tl01kq 1163 5 can can MD cord-010027-r0tl01kq 1163 6 both both DT cord-010027-r0tl01kq 1163 7 be be VB cord-010027-r0tl01kq 1163 8 detected detect VBN cord-010027-r0tl01kq 1163 9 in in IN cord-010027-r0tl01kq 1163 10 a a DT cord-010027-r0tl01kq 1163 11 single single JJ cord-010027-r0tl01kq 1163 12 assay assay NN cord-010027-r0tl01kq 1163 13 . . . cord-010027-r0tl01kq 1164 1 We -PRON- PRP cord-010027-r0tl01kq 1164 2 have have VBP cord-010027-r0tl01kq 1164 3 demonstrated demonstrate VBN cord-010027-r0tl01kq 1164 4 the the DT cord-010027-r0tl01kq 1164 5 sensitivity sensitivity NN cord-010027-r0tl01kq 1164 6 , , , cord-010027-r0tl01kq 1164 7 specificity specificity NN cord-010027-r0tl01kq 1164 8 , , , cord-010027-r0tl01kq 1164 9 repeatability repeatability NN cord-010027-r0tl01kq 1164 10 and and CC cord-010027-r0tl01kq 1164 11 robustness robustness NN cord-010027-r0tl01kq 1164 12 of of IN cord-010027-r0tl01kq 1164 13 the the DT cord-010027-r0tl01kq 1164 14 test test NN cord-010027-r0tl01kq 1164 15 to to TO cord-010027-r0tl01kq 1164 16 be be VB cord-010027-r0tl01kq 1164 17 very very RB cord-010027-r0tl01kq 1164 18 high high JJ cord-010027-r0tl01kq 1164 19 with with IN cord-010027-r0tl01kq 1164 20 a a DT cord-010027-r0tl01kq 1164 21 turnaround turnaround NN cord-010027-r0tl01kq 1164 22 time time NN cord-010027-r0tl01kq 1164 23 of of IN cord-010027-r0tl01kq 1164 24 no no DT cord-010027-r0tl01kq 1164 25 more more JJR cord-010027-r0tl01kq 1164 26 than than IN cord-010027-r0tl01kq 1164 27 5 5 CD cord-010027-r0tl01kq 1164 28 working working NN cord-010027-r0tl01kq 1164 29 days day NNS cord-010027-r0tl01kq 1164 30 . . . cord-010027-r0tl01kq 1165 1 As as IN cord-010027-r0tl01kq 1165 2 ~30 ~30 CD cord-010027-r0tl01kq 1165 3 % % NN cord-010027-r0tl01kq 1165 4 of of IN cord-010027-r0tl01kq 1165 5 GCT GCT NNP cord-010027-r0tl01kq 1165 6 recur recur VBP cord-010027-r0tl01kq 1165 7 locally locally RB cord-010027-r0tl01kq 1165 8 following follow VBG cord-010027-r0tl01kq 1165 9 curettage curettage NN cord-010027-r0tl01kq 1165 10 a a DT cord-010027-r0tl01kq 1165 11 blood blood NN cord-010027-r0tl01kq 1165 12 test test NN cord-010027-r0tl01kq 1165 13 would would MD cord-010027-r0tl01kq 1165 14 be be VB cord-010027-r0tl01kq 1165 15 valuable valuable JJ cord-010027-r0tl01kq 1165 16 to to TO cord-010027-r0tl01kq 1165 17 monitor monitor VB cord-010027-r0tl01kq 1165 18 patients patient NNS cord-010027-r0tl01kq 1165 19 . . . cord-010027-r0tl01kq 1166 1 To to IN cord-010027-r0tl01kq 1166 2 this this DT cord-010027-r0tl01kq 1166 3 end end NN cord-010027-r0tl01kq 1166 4 the the DT cord-010027-r0tl01kq 1166 5 ddPCR ddPCR NNP cord-010027-r0tl01kq 1166 6 test test NN cord-010027-r0tl01kq 1166 7 also also RB cord-010027-r0tl01kq 1166 8 shows show VBZ cord-010027-r0tl01kq 1166 9 that that IN cord-010027-r0tl01kq 1166 10 the the DT cord-010027-r0tl01kq 1166 11 mutation mutation NN cord-010027-r0tl01kq 1166 12 can can MD cord-010027-r0tl01kq 1166 13 be be VB cord-010027-r0tl01kq 1166 14 detected detect VBN cord-010027-r0tl01kq 1166 15 in in IN cord-010027-r0tl01kq 1166 16 plasma plasma NN cord-010027-r0tl01kq 1166 17 . . . cord-010027-r0tl01kq 1167 1 Typically typically RB cord-010027-r0tl01kq 1167 2 resistant resistant JJ cord-010027-r0tl01kq 1167 3 to to IN cord-010027-r0tl01kq 1167 4 chemotherapy chemotherapy NN cord-010027-r0tl01kq 1167 5 and and CC cord-010027-r0tl01kq 1167 6 radiotherapy radiotherapy NN cord-010027-r0tl01kq 1167 7 , , , cord-010027-r0tl01kq 1167 8 high high JJ cord-010027-r0tl01kq 1167 9 grade grade NN cord-010027-r0tl01kq 1167 10 disease disease NN cord-010027-r0tl01kq 1167 11 has have VBZ cord-010027-r0tl01kq 1167 12 been be VBN cord-010027-r0tl01kq 1167 13 treated treat VBN cord-010027-r0tl01kq 1167 14 by by IN cord-010027-r0tl01kq 1167 15 surgery surgery NN cord-010027-r0tl01kq 1167 16 for for IN cord-010027-r0tl01kq 1167 17 more more JJR cord-010027-r0tl01kq 1167 18 than than IN cord-010027-r0tl01kq 1167 19 50 50 CD cord-010027-r0tl01kq 1167 20 years year NNS cord-010027-r0tl01kq 1167 21 . . . cord-010027-r0tl01kq 1168 1 It -PRON- PRP cord-010027-r0tl01kq 1168 2 has have VBZ cord-010027-r0tl01kq 1168 3 recently recently RB cord-010027-r0tl01kq 1168 4 been be VBN cord-010027-r0tl01kq 1168 5 shown show VBN cord-010027-r0tl01kq 1168 6 that that IN cord-010027-r0tl01kq 1168 7 IDH1 IDH1 NNP cord-010027-r0tl01kq 1168 8 and and CC cord-010027-r0tl01kq 1168 9 IDH2 IDH2 NNP cord-010027-r0tl01kq 1168 10 mutations mutation NNS cord-010027-r0tl01kq 1168 11 are be VBP cord-010027-r0tl01kq 1168 12 present present JJ cord-010027-r0tl01kq 1168 13 ab ab FW cord-010027-r0tl01kq 1168 14 initio initio FW cord-010027-r0tl01kq 1168 15 in in IN cord-010027-r0tl01kq 1168 16 ~60 ~60 CD cord-010027-r0tl01kq 1168 17 % % NN cord-010027-r0tl01kq 1168 18 of of IN cord-010027-r0tl01kq 1168 19 chondrosarcoma chondrosarcoma NN cord-010027-r0tl01kq 1168 20 cases case NNS cord-010027-r0tl01kq 1168 21 and and CC cord-010027-r0tl01kq 1168 22 that that IN cord-010027-r0tl01kq 1168 23 these these DT cord-010027-r0tl01kq 1168 24 are be VBP cord-010027-r0tl01kq 1168 25 retained retain VBN cord-010027-r0tl01kq 1168 26 throughout throughout IN cord-010027-r0tl01kq 1168 27 disease disease NN cord-010027-r0tl01kq 1168 28 progression progression NN cord-010027-r0tl01kq 1168 29 . . . cord-010027-r0tl01kq 1169 1 This this DT cord-010027-r0tl01kq 1169 2 has have VBZ cord-010027-r0tl01kq 1169 3 opened open VBN cord-010027-r0tl01kq 1169 4 up up RP cord-010027-r0tl01kq 1169 5 a a DT cord-010027-r0tl01kq 1169 6 number number NN cord-010027-r0tl01kq 1169 7 of of IN cord-010027-r0tl01kq 1169 8 new new JJ cord-010027-r0tl01kq 1169 9 potential potential JJ cord-010027-r0tl01kq 1169 10 diagnostic diagnostic JJ cord-010027-r0tl01kq 1169 11 , , , cord-010027-r0tl01kq 1169 12 biomarker biomarker NN cord-010027-r0tl01kq 1169 13 and and CC cord-010027-r0tl01kq 1169 14 therapeutic therapeutic JJ cord-010027-r0tl01kq 1169 15 options option NNS cord-010027-r0tl01kq 1169 16 . . . cord-010027-r0tl01kq 1170 1 Digital Digital NNP cord-010027-r0tl01kq 1170 2 PCR PCR NNP cord-010027-r0tl01kq 1170 3 is be VBZ cord-010027-r0tl01kq 1170 4 currently currently RB cord-010027-r0tl01kq 1170 5 the the DT cord-010027-r0tl01kq 1170 6 most most RBS cord-010027-r0tl01kq 1170 7 sensitive sensitive JJ cord-010027-r0tl01kq 1170 8 and and CC cord-010027-r0tl01kq 1170 9 accurate accurate JJ cord-010027-r0tl01kq 1170 10 method method NN cord-010027-r0tl01kq 1170 11 for for IN cord-010027-r0tl01kq 1170 12 detecting detect VBG cord-010027-r0tl01kq 1170 13 and and CC cord-010027-r0tl01kq 1170 14 quantifying quantify VBG cord-010027-r0tl01kq 1170 15 mutant mutant JJ cord-010027-r0tl01kq 1170 16 DNA dna NN cord-010027-r0tl01kq 1170 17 molecules molecule NNS cord-010027-r0tl01kq 1170 18 . . . cord-010027-r0tl01kq 1171 1 The the DT cord-010027-r0tl01kq 1171 2 BioRad BioRad NNP cord-010027-r0tl01kq 1171 3 QX200 QX200 NNP cord-010027-r0tl01kq 1171 4 digital digital JJ cord-010027-r0tl01kq 1171 5 PCR PCR NNP cord-010027-r0tl01kq 1171 6 platform platform NN cord-010027-r0tl01kq 1171 7 is be VBZ cord-010027-r0tl01kq 1171 8 also also RB cord-010027-r0tl01kq 1171 9 both both DT cord-010027-r0tl01kq 1171 10 cost cost VBP cord-010027-r0tl01kq 1171 11 effective effective JJ cord-010027-r0tl01kq 1171 12 and and CC cord-010027-r0tl01kq 1171 13 scalable scalable JJ cord-010027-r0tl01kq 1171 14 . . . cord-010027-r0tl01kq 1172 1 Using use VBG cord-010027-r0tl01kq 1172 2 the the DT cord-010027-r0tl01kq 1172 3 QX200 QX200 NNP cord-010027-r0tl01kq 1172 4 platform platform NN cord-010027-r0tl01kq 1172 5 , , , cord-010027-r0tl01kq 1172 6 we -PRON- PRP cord-010027-r0tl01kq 1172 7 have have VBP cord-010027-r0tl01kq 1172 8 developed develop VBN cord-010027-r0tl01kq 1172 9 assays assay NNS cord-010027-r0tl01kq 1172 10 for for IN cord-010027-r0tl01kq 1172 11 the the DT cord-010027-r0tl01kq 1172 12 5 5 CD cord-010027-r0tl01kq 1172 13 common common JJ cord-010027-r0tl01kq 1172 14 IDH1 IDH1 NNP cord-010027-r0tl01kq 1172 15 mutations mutation NNS cord-010027-r0tl01kq 1172 16 and and CC cord-010027-r0tl01kq 1172 17 the the DT cord-010027-r0tl01kq 1172 18 1 1 CD cord-010027-r0tl01kq 1172 19 common common JJ cord-010027-r0tl01kq 1172 20 IDH2 IDH2 NNP cord-010027-r0tl01kq 1172 21 mutation mutation NN cord-010027-r0tl01kq 1172 22 . . . cord-010027-r0tl01kq 1173 1 We -PRON- PRP cord-010027-r0tl01kq 1173 2 have have VBP cord-010027-r0tl01kq 1173 3 developed develop VBN cord-010027-r0tl01kq 1173 4 the the DT cord-010027-r0tl01kq 1173 5 IDH1 IDH1 NNP cord-010027-r0tl01kq 1173 6 assays assay NNS cord-010027-r0tl01kq 1173 7 both both DT cord-010027-r0tl01kq 1173 8 in in IN cord-010027-r0tl01kq 1173 9 singleplex singleplex NN cord-010027-r0tl01kq 1173 10 and and CC cord-010027-r0tl01kq 1173 11 multiplex multiplex NN cord-010027-r0tl01kq 1173 12 . . . cord-010027-r0tl01kq 1174 1 We -PRON- PRP cord-010027-r0tl01kq 1174 2 have have VBP cord-010027-r0tl01kq 1174 3 optimised optimise VBN cord-010027-r0tl01kq 1174 4 and and CC cord-010027-r0tl01kq 1174 5 validated validate VBN cord-010027-r0tl01kq 1174 6 all all DT cord-010027-r0tl01kq 1174 7 assays assay NNS cord-010027-r0tl01kq 1174 8 in in IN cord-010027-r0tl01kq 1174 9 tissue tissue NN cord-010027-r0tl01kq 1174 10 samples sample NNS cord-010027-r0tl01kq 1174 11 demonstrating demonstrate VBG cord-010027-r0tl01kq 1174 12 both both DT cord-010027-r0tl01kq 1174 13 high high JJ cord-010027-r0tl01kq 1174 14 sensitivity sensitivity NN cord-010027-r0tl01kq 1174 15 and and CC cord-010027-r0tl01kq 1174 16 specificity specificity NN cord-010027-r0tl01kq 1174 17 when when WRB cord-010027-r0tl01kq 1174 18 compared compare VBN cord-010027-r0tl01kq 1174 19 to to IN cord-010027-r0tl01kq 1174 20 previously previously RB cord-010027-r0tl01kq 1174 21 genotypes genotype NNS cord-010027-r0tl01kq 1174 22 samples sample NNS cord-010027-r0tl01kq 1174 23 . . . cord-010027-r0tl01kq 1175 1 We -PRON- PRP cord-010027-r0tl01kq 1175 2 have have VBP cord-010027-r0tl01kq 1175 3 demonstrated demonstrate VBN cord-010027-r0tl01kq 1175 4 that that IN cord-010027-r0tl01kq 1175 5 the the DT cord-010027-r0tl01kq 1175 6 assays assay NNS cord-010027-r0tl01kq 1175 7 are be VBP cord-010027-r0tl01kq 1175 8 quantitative quantitative JJ cord-010027-r0tl01kq 1175 9 over over IN cord-010027-r0tl01kq 1175 10 4 4 CD cord-010027-r0tl01kq 1175 11 orders order NNS cord-010027-r0tl01kq 1175 12 of of IN cord-010027-r0tl01kq 1175 13 magnitude magnitude NN cord-010027-r0tl01kq 1175 14 and and CC cord-010027-r0tl01kq 1175 15 in in IN cord-010027-r0tl01kq 1175 16 high high JJ cord-010027-r0tl01kq 1175 17 quality quality NN cord-010027-r0tl01kq 1175 18 DNA dna NN cord-010027-r0tl01kq 1175 19 we -PRON- PRP cord-010027-r0tl01kq 1175 20 can can MD cord-010027-r0tl01kq 1175 21 detect detect VB cord-010027-r0tl01kq 1175 22 IDH IDH NNP cord-010027-r0tl01kq 1175 23 mutations mutation NNS cord-010027-r0tl01kq 1175 24 at at IN cord-010027-r0tl01kq 1175 25 below below IN cord-010027-r0tl01kq 1175 26 1 1 CD cord-010027-r0tl01kq 1175 27 mutant mutant JJ cord-010027-r0tl01kq 1175 28 molecule molecule NN cord-010027-r0tl01kq 1175 29 in in IN cord-010027-r0tl01kq 1175 30 10,000 10,000 CD cord-010027-r0tl01kq 1175 31 wild wild JJ cord-010027-r0tl01kq 1175 32 type type NN cord-010027-r0tl01kq 1175 33 molecules molecule NNS cord-010027-r0tl01kq 1175 34 . . . cord-010027-r0tl01kq 1176 1 In in IN cord-010027-r0tl01kq 1176 2 a a DT cord-010027-r0tl01kq 1176 3 pilot pilot NN cord-010027-r0tl01kq 1176 4 study study NN cord-010027-r0tl01kq 1176 5 , , , cord-010027-r0tl01kq 1176 6 we -PRON- PRP cord-010027-r0tl01kq 1176 7 have have VBP cord-010027-r0tl01kq 1176 8 used use VBN cord-010027-r0tl01kq 1176 9 digital digital JJ cord-010027-r0tl01kq 1176 10 PCR PCR NNP cord-010027-r0tl01kq 1176 11 to to TO cord-010027-r0tl01kq 1176 12 analyse analyse VB cord-010027-r0tl01kq 1176 13 circulating circulate VBG cord-010027-r0tl01kq 1176 14 tumour tumour NN cord-010027-r0tl01kq 1176 15 DNA dna NN cord-010027-r0tl01kq 1176 16 levels level NNS cord-010027-r0tl01kq 1176 17 in in IN cord-010027-r0tl01kq 1176 18 plasma plasma NN cord-010027-r0tl01kq 1176 19 taken take VBN cord-010027-r0tl01kq 1176 20 pre pre NN cord-010027-r0tl01kq 1176 21 - - NN cord-010027-r0tl01kq 1176 22 surgery surgery NN cord-010027-r0tl01kq 1176 23 from from IN cord-010027-r0tl01kq 1176 24 14 14 CD cord-010027-r0tl01kq 1176 25 patients patient NNS cord-010027-r0tl01kq 1176 26 whose whose WP$ cord-010027-r0tl01kq 1176 27 chondrosarcoma chondrosarcoma NNP cord-010027-r0tl01kq 1176 28 harbour harbour VB cord-010027-r0tl01kq 1176 29 an an DT cord-010027-r0tl01kq 1176 30 IDH1 IDH1 NNP cord-010027-r0tl01kq 1176 31 mutation mutation NN cord-010027-r0tl01kq 1176 32 . . . cord-010027-r0tl01kq 1177 1 It -PRON- PRP cord-010027-r0tl01kq 1177 2 was be VBD cord-010027-r0tl01kq 1177 3 possible possible JJ cord-010027-r0tl01kq 1177 4 to to TO cord-010027-r0tl01kq 1177 5 detect detect VB cord-010027-r0tl01kq 1177 6 IDH1 IDH1 NNP cord-010027-r0tl01kq 1177 7 mutant mutant JJ cord-010027-r0tl01kq 1177 8 molecules molecule NNS cord-010027-r0tl01kq 1177 9 in in IN cord-010027-r0tl01kq 1177 10 plasma plasma NN cord-010027-r0tl01kq 1177 11 of of IN cord-010027-r0tl01kq 1177 12 all all DT cord-010027-r0tl01kq 1177 13 Grade Grade NNP cord-010027-r0tl01kq 1177 14 III iii CD cord-010027-r0tl01kq 1177 15 samples sample NNS cord-010027-r0tl01kq 1177 16 , , , cord-010027-r0tl01kq 1177 17 50 50 CD cord-010027-r0tl01kq 1177 18 % % NN cord-010027-r0tl01kq 1177 19 of of IN cord-010027-r0tl01kq 1177 20 Grade Grade NNP cord-010027-r0tl01kq 1177 21 II II NNP cord-010027-r0tl01kq 1177 22 and and CC cord-010027-r0tl01kq 1177 23 none none NN cord-010027-r0tl01kq 1177 24 of of IN cord-010027-r0tl01kq 1177 25 the the DT cord-010027-r0tl01kq 1177 26 Grade Grade NNP cord-010027-r0tl01kq 1177 27 I -PRON- PRP cord-010027-r0tl01kq 1177 28 samples sample NNS cord-010027-r0tl01kq 1177 29 . . . cord-010027-r0tl01kq 1178 1 In in IN cord-010027-r0tl01kq 1178 2 4 4 CD cord-010027-r0tl01kq 1178 3 of of IN cord-010027-r0tl01kq 1178 4 these these DT cord-010027-r0tl01kq 1178 5 cases case NNS cord-010027-r0tl01kq 1178 6 where where WRB cord-010027-r0tl01kq 1178 7 the the DT cord-010027-r0tl01kq 1178 8 ctDNA ctdna NN cord-010027-r0tl01kq 1178 9 was be VBD cord-010027-r0tl01kq 1178 10 also also RB cord-010027-r0tl01kq 1178 11 measured measure VBN cord-010027-r0tl01kq 1178 12 post post RB cord-010027-r0tl01kq 1178 13 - - JJ cord-010027-r0tl01kq 1178 14 operatively operatively RB cord-010027-r0tl01kq 1178 15 , , , cord-010027-r0tl01kq 1178 16 the the DT cord-010027-r0tl01kq 1178 17 levels level NNS cord-010027-r0tl01kq 1178 18 of of IN cord-010027-r0tl01kq 1178 19 ctDNA ctdna NN cord-010027-r0tl01kq 1178 20 dropped drop VBD cord-010027-r0tl01kq 1178 21 dramatically dramatically RB cord-010027-r0tl01kq 1178 22 . . . cord-010027-r0tl01kq 1179 1 Tumour tumour NN cord-010027-r0tl01kq 1179 2 Necrosis necrosis NN cord-010027-r0tl01kq 1179 3 Factor Factor NNP cord-010027-r0tl01kq 1179 4 Receptor Receptor NNP cord-010027-r0tl01kq 1179 5 , , , cord-010027-r0tl01kq 1179 6 CD40 CD40 NNP cord-010027-r0tl01kq 1179 7 , , , cord-010027-r0tl01kq 1179 8 Gene Gene NNP cord-010027-r0tl01kq 1179 9 Functions Functions NNPS cord-010027-r0tl01kq 1179 10 as as IN cord-010027-r0tl01kq 1179 11 an an DT cord-010027-r0tl01kq 1179 12 Oncogene oncogene NN cord-010027-r0tl01kq 1179 13 and and CC cord-010027-r0tl01kq 1179 14 Promotes promote VBZ cord-010027-r0tl01kq 1179 15 Cell cell NN cord-010027-r0tl01kq 1179 16 Proliferation proliferation NN cord-010027-r0tl01kq 1179 17 in in IN cord-010027-r0tl01kq 1179 18 Colorectal Colorectal NNP cord-010027-r0tl01kq 1179 19 Cancer Cancer NNP cord-010027-r0tl01kq 1179 20 Cell Cell NNP cord-010027-r0tl01kq 1179 21 Lines line NNS cord-010027-r0tl01kq 1179 22 P p NN cord-010027-r0tl01kq 1179 23 HAA HAA NNP cord-010027-r0tl01kq 1179 24 Almasmoum Almasmoum NNP cord-010027-r0tl01kq 1179 25 ; ; : cord-010027-r0tl01kq 1179 26 H H NNP cord-010027-r0tl01kq 1179 27 Thorpe Thorpe NNP cord-010027-r0tl01kq 1179 28 ; ; : cord-010027-r0tl01kq 1180 1 M M NNP cord-010027-r0tl01kq 1180 2 Ilyas Ilyas NNP cord-010027-r0tl01kq 1180 3 Introduction Introduction NNP cord-010027-r0tl01kq 1180 4 : : : cord-010027-r0tl01kq 1181 1 CD40 CD40 NNP cord-010027-r0tl01kq 1181 2 is be VBZ cord-010027-r0tl01kq 1181 3 a a DT cord-010027-r0tl01kq 1181 4 tumour tumour NN cord-010027-r0tl01kq 1181 5 necrosis necrosis NN cord-010027-r0tl01kq 1181 6 factor factor NN cord-010027-r0tl01kq 1181 7 ( ( -LRB- cord-010027-r0tl01kq 1181 8 TNF TNF NNP cord-010027-r0tl01kq 1181 9 ) ) -RRB- cord-010027-r0tl01kq 1181 10 receptor receptor NN cord-010027-r0tl01kq 1181 11 which which WDT cord-010027-r0tl01kq 1181 12 regulates regulate VBZ cord-010027-r0tl01kq 1181 13 a a DT cord-010027-r0tl01kq 1181 14 range range NN cord-010027-r0tl01kq 1181 15 of of IN cord-010027-r0tl01kq 1181 16 cellular cellular JJ cord-010027-r0tl01kq 1181 17 responses response NNS cord-010027-r0tl01kq 1181 18 . . . cord-010027-r0tl01kq 1182 1 CD40 CD40 NNP cord-010027-r0tl01kq 1182 2 is be VBZ cord-010027-r0tl01kq 1182 3 activated activate VBN cord-010027-r0tl01kq 1182 4 by by IN cord-010027-r0tl01kq 1182 5 its -PRON- PRP$ cord-010027-r0tl01kq 1182 6 ligand ligand NN cord-010027-r0tl01kq 1182 7 CD40L cd40l NN cord-010027-r0tl01kq 1182 8 and and CC cord-010027-r0tl01kq 1182 9 may may MD cord-010027-r0tl01kq 1182 10 promote promote VB cord-010027-r0tl01kq 1182 11 tumourigenesis tumourigenesis NN cord-010027-r0tl01kq 1182 12 in in IN cord-010027-r0tl01kq 1182 13 haematological haematological JJ cord-010027-r0tl01kq 1182 14 cancers cancer NNS cord-010027-r0tl01kq 1182 15 . . . cord-010027-r0tl01kq 1183 1 However however RB cord-010027-r0tl01kq 1183 2 , , , cord-010027-r0tl01kq 1183 3 CD40 CD40 NNP cord-010027-r0tl01kq 1183 4 functions function NNS cord-010027-r0tl01kq 1183 5 as as IN cord-010027-r0tl01kq 1183 6 a a DT cord-010027-r0tl01kq 1183 7 tumour tumour NN cord-010027-r0tl01kq 1183 8 suppressor suppressor NN cord-010027-r0tl01kq 1183 9 in in IN cord-010027-r0tl01kq 1183 10 solid solid JJ cord-010027-r0tl01kq 1183 11 cancers cancer NNS cord-010027-r0tl01kq 1183 12 . . . cord-010027-r0tl01kq 1184 1 CD40 CD40 NNP cord-010027-r0tl01kq 1184 2 maps map NNS cord-010027-r0tl01kq 1184 3 to to TO cord-010027-r0tl01kq 1184 4 chromosome chromosome VB cord-010027-r0tl01kq 1184 5 20q13 20q13 CD cord-010027-r0tl01kq 1184 6 , , , cord-010027-r0tl01kq 1184 7 a a DT cord-010027-r0tl01kq 1184 8 region region NN cord-010027-r0tl01kq 1184 9 which which WDT cord-010027-r0tl01kq 1184 10 is be VBZ cord-010027-r0tl01kq 1184 11 amplified amplify VBN cord-010027-r0tl01kq 1184 12 in in IN cord-010027-r0tl01kq 1184 13 40 40 CD cord-010027-r0tl01kq 1184 14 - - SYM cord-010027-r0tl01kq 1184 15 50 50 CD cord-010027-r0tl01kq 1184 16 % % NN cord-010027-r0tl01kq 1184 17 of of IN cord-010027-r0tl01kq 1184 18 colorectal colorectal JJ cord-010027-r0tl01kq 1184 19 cancer cancer NN cord-010027-r0tl01kq 1184 20 ( ( -LRB- cord-010027-r0tl01kq 1184 21 CRC CRC NNP cord-010027-r0tl01kq 1184 22 ) ) -RRB- cord-010027-r0tl01kq 1184 23 . . . cord-010027-r0tl01kq 1185 1 The the DT cord-010027-r0tl01kq 1185 2 functional functional JJ cord-010027-r0tl01kq 1185 3 activities activity NNS cord-010027-r0tl01kq 1185 4 of of IN cord-010027-r0tl01kq 1185 5 CD40 CD40 NNP cord-010027-r0tl01kq 1185 6 were be VBD cord-010027-r0tl01kq 1185 7 tested test VBN cord-010027-r0tl01kq 1185 8 in in IN cord-010027-r0tl01kq 1185 9 CRC CRC NNP cord-010027-r0tl01kq 1185 10 cell cell NN cord-010027-r0tl01kq 1185 11 lines line NNS cord-010027-r0tl01kq 1185 12 for for IN cord-010027-r0tl01kq 1185 13 cell cell NN cord-010027-r0tl01kq 1185 14 proliferation proliferation NN cord-010027-r0tl01kq 1185 15 and and CC cord-010027-r0tl01kq 1185 16 motility motility NN cord-010027-r0tl01kq 1185 17 . . . cord-010027-r0tl01kq 1186 1 Methods method NNS cord-010027-r0tl01kq 1186 2 : : : cord-010027-r0tl01kq 1187 1 Expression expression NN cord-010027-r0tl01kq 1187 2 of of IN cord-010027-r0tl01kq 1187 3 CD40 CD40 NNP cord-010027-r0tl01kq 1187 4 was be VBD cord-010027-r0tl01kq 1187 5 screened screen VBN cord-010027-r0tl01kq 1187 6 in in IN cord-010027-r0tl01kq 1187 7 CRC CRC NNP cord-010027-r0tl01kq 1187 8 cell cell NN cord-010027-r0tl01kq 1187 9 lines line NNS cord-010027-r0tl01kq 1187 10 by by IN cord-010027-r0tl01kq 1187 11 western western JJ cord-010027-r0tl01kq 1187 12 blot blot NN cord-010027-r0tl01kq 1187 13 . . . cord-010027-r0tl01kq 1188 1 To to TO cord-010027-r0tl01kq 1188 2 define define VB cord-010027-r0tl01kq 1188 3 the the DT cord-010027-r0tl01kq 1188 4 role role NN cord-010027-r0tl01kq 1188 5 of of IN cord-010027-r0tl01kq 1188 6 CD40 CD40 NNP cord-010027-r0tl01kq 1188 7 in in IN cord-010027-r0tl01kq 1188 8 human human JJ cord-010027-r0tl01kq 1188 9 CRC crc NN cord-010027-r0tl01kq 1188 10 , , , cord-010027-r0tl01kq 1188 11 we -PRON- PRP cord-010027-r0tl01kq 1188 12 knocked knock VBD cord-010027-r0tl01kq 1188 13 down down RP cord-010027-r0tl01kq 1188 14 CD40 CD40 NNP cord-010027-r0tl01kq 1188 15 using use VBG cord-010027-r0tl01kq 1188 16 small small JJ cord-010027-r0tl01kq 1188 17 interfering interfere VBG cord-010027-r0tl01kq 1188 18 RNA RNA NNP cord-010027-r0tl01kq 1188 19 ( ( -LRB- cord-010027-r0tl01kq 1188 20 siRNA siRNA NNP cord-010027-r0tl01kq 1188 21 ) ) -RRB- cord-010027-r0tl01kq 1188 22 and and CC cord-010027-r0tl01kq 1188 23 the the DT cord-010027-r0tl01kq 1188 24 knockdown knockdown NN cord-010027-r0tl01kq 1188 25 was be VBD cord-010027-r0tl01kq 1188 26 confirmed confirm VBN cord-010027-r0tl01kq 1188 27 by by IN cord-010027-r0tl01kq 1188 28 qPCR qPCR NNP cord-010027-r0tl01kq 1188 29 and and CC cord-010027-r0tl01kq 1188 30 western western JJ cord-010027-r0tl01kq 1188 31 blot blot NN cord-010027-r0tl01kq 1188 32 . . . cord-010027-r0tl01kq 1189 1 The the DT cord-010027-r0tl01kq 1189 2 PrestoBlue PrestoBlue NNP cord-010027-r0tl01kq 1189 3 assay assay NN cord-010027-r0tl01kq 1189 4 was be VBD cord-010027-r0tl01kq 1189 5 used use VBN cord-010027-r0tl01kq 1189 6 to to TO cord-010027-r0tl01kq 1189 7 study study VB cord-010027-r0tl01kq 1189 8 proliferation proliferation NN cord-010027-r0tl01kq 1189 9 in in IN cord-010027-r0tl01kq 1189 10 colorectal colorectal JJ cord-010027-r0tl01kq 1189 11 cell cell NN cord-010027-r0tl01kq 1189 12 lines line NNS cord-010027-r0tl01kq 1189 13 , , , cord-010027-r0tl01kq 1189 14 and and CC cord-010027-r0tl01kq 1189 15 flow flow VB cord-010027-r0tl01kq 1189 16 cytometry cytometry NN cord-010027-r0tl01kq 1189 17 to to TO cord-010027-r0tl01kq 1189 18 study study VB cord-010027-r0tl01kq 1189 19 the the DT cord-010027-r0tl01kq 1189 20 cell cell NN cord-010027-r0tl01kq 1189 21 cycle cycle NN cord-010027-r0tl01kq 1189 22 . . . cord-010027-r0tl01kq 1190 1 Transwell Transwell NNP cord-010027-r0tl01kq 1190 2 migration migration NN cord-010027-r0tl01kq 1190 3 and and CC cord-010027-r0tl01kq 1190 4 wound wound VB cord-010027-r0tl01kq 1190 5 healing healing NN cord-010027-r0tl01kq 1190 6 assays assay NNS cord-010027-r0tl01kq 1190 7 were be VBD cord-010027-r0tl01kq 1190 8 performed perform VBN cord-010027-r0tl01kq 1190 9 to to TO cord-010027-r0tl01kq 1190 10 investigate investigate VB cord-010027-r0tl01kq 1190 11 the the DT cord-010027-r0tl01kq 1190 12 effect effect NN cord-010027-r0tl01kq 1190 13 of of IN cord-010027-r0tl01kq 1190 14 CD40 CD40 NNP cord-010027-r0tl01kq 1190 15 on on IN cord-010027-r0tl01kq 1190 16 cell cell NN cord-010027-r0tl01kq 1190 17 motility motility NN cord-010027-r0tl01kq 1190 18 in in IN cord-010027-r0tl01kq 1190 19 CRC CRC NNP cord-010027-r0tl01kq 1190 20 . . . cord-010027-r0tl01kq 1191 1 Result result NN cord-010027-r0tl01kq 1191 2 : : : cord-010027-r0tl01kq 1192 1 CD40 CD40 NNP cord-010027-r0tl01kq 1192 2 was be VBD cord-010027-r0tl01kq 1192 3 expressed express VBN cord-010027-r0tl01kq 1192 4 in in IN cord-010027-r0tl01kq 1192 5 CRC CRC NNP cord-010027-r0tl01kq 1192 6 cell cell NN cord-010027-r0tl01kq 1192 7 lines line NNS cord-010027-r0tl01kq 1193 1 HCT116 HCT116 NNP cord-010027-r0tl01kq 1193 2 , , , cord-010027-r0tl01kq 1193 3 RKO RKO NNP cord-010027-r0tl01kq 1193 4 , , , cord-010027-r0tl01kq 1193 5 DLD1 DLD1 NNP cord-010027-r0tl01kq 1193 6 and and CC cord-010027-r0tl01kq 1193 7 HT29 HT29 NNP cord-010027-r0tl01kq 1193 8 , , , cord-010027-r0tl01kq 1193 9 and and CC cord-010027-r0tl01kq 1193 10 not not RB cord-010027-r0tl01kq 1193 11 expressed express VBN cord-010027-r0tl01kq 1193 12 in in IN cord-010027-r0tl01kq 1193 13 SW480 SW480 NNP cord-010027-r0tl01kq 1193 14 and and CC cord-010027-r0tl01kq 1193 15 SW620 SW620 NNP cord-010027-r0tl01kq 1193 16 cell cell NN cord-010027-r0tl01kq 1193 17 lines line NNS cord-010027-r0tl01kq 1193 18 . . . cord-010027-r0tl01kq 1194 1 Knockdown knockdown NN cord-010027-r0tl01kq 1194 2 of of IN cord-010027-r0tl01kq 1194 3 CD40 CD40 NNP cord-010027-r0tl01kq 1194 4 reduced reduce VBD cord-010027-r0tl01kq 1194 5 cellular cellular JJ cord-010027-r0tl01kq 1194 6 proliferation proliferation NN cord-010027-r0tl01kq 1194 7 in in IN cord-010027-r0tl01kq 1194 8 HCT116 HCT116 NNP cord-010027-r0tl01kq 1194 9 ( ( -LRB- cord-010027-r0tl01kq 1194 10 p=0.0158 p=0.0158 NNS cord-010027-r0tl01kq 1194 11 ) ) -RRB- cord-010027-r0tl01kq 1194 12 and and CC cord-010027-r0tl01kq 1194 13 DLD1 DLD1 NNP cord-010027-r0tl01kq 1194 14 ( ( -LRB- cord-010027-r0tl01kq 1194 15 p=0.0020 p=0.0020 NN cord-010027-r0tl01kq 1194 16 ) ) -RRB- cord-010027-r0tl01kq 1194 17 cell cell NN cord-010027-r0tl01kq 1194 18 lines line NNS cord-010027-r0tl01kq 1194 19 . . . cord-010027-r0tl01kq 1195 1 Knockdown knockdown NN cord-010027-r0tl01kq 1195 2 of of IN cord-010027-r0tl01kq 1195 3 CD40 CD40 NNP cord-010027-r0tl01kq 1195 4 showed show VBD cord-010027-r0tl01kq 1195 5 a a DT cord-010027-r0tl01kq 1195 6 higher high JJR cord-010027-r0tl01kq 1195 7 number number NN cord-010027-r0tl01kq 1195 8 of of IN cord-010027-r0tl01kq 1195 9 cells cell NNS cord-010027-r0tl01kq 1195 10 in in IN cord-010027-r0tl01kq 1195 11 the the DT cord-010027-r0tl01kq 1195 12 sub sub JJ cord-010027-r0tl01kq 1195 13 G0 g0 NN cord-010027-r0tl01kq 1195 14 phase phase NN cord-010027-r0tl01kq 1195 15 ( ( -LRB- cord-010027-r0tl01kq 1195 16 dead dead JJ cord-010027-r0tl01kq 1195 17 cells cell NNS cord-010027-r0tl01kq 1195 18 ) ) -RRB- cord-010027-r0tl01kq 1195 19 in in IN cord-010027-r0tl01kq 1195 20 the the DT cord-010027-r0tl01kq 1195 21 cell cell NN cord-010027-r0tl01kq 1195 22 cycle cycle NN cord-010027-r0tl01kq 1195 23 analysis analysis NN cord-010027-r0tl01kq 1195 24 compared compare VBN cord-010027-r0tl01kq 1195 25 to to IN cord-010027-r0tl01kq 1195 26 the the DT cord-010027-r0tl01kq 1195 27 control control NN cord-010027-r0tl01kq 1195 28 . . . cord-010027-r0tl01kq 1196 1 However however RB cord-010027-r0tl01kq 1196 2 , , , cord-010027-r0tl01kq 1196 3 knockdown knockdown NN cord-010027-r0tl01kq 1196 4 of of IN cord-010027-r0tl01kq 1196 5 CD40 CD40 NNP cord-010027-r0tl01kq 1196 6 in in IN cord-010027-r0tl01kq 1196 7 HCT116 HCT116 NNP cord-010027-r0tl01kq 1196 8 did do VBD cord-010027-r0tl01kq 1196 9 not not RB cord-010027-r0tl01kq 1196 10 have have VB cord-010027-r0tl01kq 1196 11 an an DT cord-010027-r0tl01kq 1196 12 effect effect NN cord-010027-r0tl01kq 1196 13 on on IN cord-010027-r0tl01kq 1196 14 cell cell NN cord-010027-r0tl01kq 1196 15 motility motility NN cord-010027-r0tl01kq 1196 16 in in IN cord-010027-r0tl01kq 1196 17 both both CC cord-010027-r0tl01kq 1196 18 the the DT cord-010027-r0tl01kq 1196 19 transwell transwell NNP cord-010027-r0tl01kq 1196 20 migration migration NN cord-010027-r0tl01kq 1196 21 ( ( -LRB- cord-010027-r0tl01kq 1196 22 HCT116= hct116= CD cord-010027-r0tl01kq 1196 23 p=0.253 p=0.253 NNS cord-010027-r0tl01kq 1196 24 ) ) -RRB- cord-010027-r0tl01kq 1196 25 and and CC cord-010027-r0tl01kq 1196 26 wound wound VB cord-010027-r0tl01kq 1196 27 healing healing NN cord-010027-r0tl01kq 1196 28 assays assay NNS cord-010027-r0tl01kq 1196 29 . . . cord-010027-r0tl01kq 1197 1 Discussion discussion NN cord-010027-r0tl01kq 1197 2 : : : cord-010027-r0tl01kq 1198 1 CD40 CD40 NNP cord-010027-r0tl01kq 1198 2 exhibited exhibit VBD cord-010027-r0tl01kq 1198 3 oncogenic oncogenic JJ cord-010027-r0tl01kq 1198 4 activity activity NN cord-010027-r0tl01kq 1198 5 in in IN cord-010027-r0tl01kq 1198 6 CRC CRC NNP cord-010027-r0tl01kq 1198 7 cell cell NN cord-010027-r0tl01kq 1198 8 lines line NNS cord-010027-r0tl01kq 1198 9 . . . cord-010027-r0tl01kq 1199 1 CD40 CD40 NNP cord-010027-r0tl01kq 1199 2 enhanced enhanced JJ cord-010027-r0tl01kq 1199 3 cell cell NN cord-010027-r0tl01kq 1199 4 proliferation proliferation NN cord-010027-r0tl01kq 1199 5 but but CC cord-010027-r0tl01kq 1199 6 not not RB cord-010027-r0tl01kq 1199 7 cell cell NN cord-010027-r0tl01kq 1199 8 motility motility NN cord-010027-r0tl01kq 1199 9 in in IN cord-010027-r0tl01kq 1199 10 CRC CRC NNP cord-010027-r0tl01kq 1199 11 cell cell NN cord-010027-r0tl01kq 1199 12 lines line NNS cord-010027-r0tl01kq 1199 13 . . . cord-010027-r0tl01kq 1200 1 The the DT cord-010027-r0tl01kq 1200 2 expression expression NN cord-010027-r0tl01kq 1200 3 of of IN cord-010027-r0tl01kq 1200 4 CD45 CD45 NNP cord-010027-r0tl01kq 1200 5 ( ( -LRB- cord-010027-r0tl01kq 1200 6 Common Common NNP cord-010027-r0tl01kq 1200 7 Leucocyte Leucocyte NNP cord-010027-r0tl01kq 1200 8 Antigen Antigen NNP cord-010027-r0tl01kq 1200 9 ) ) -RRB- cord-010027-r0tl01kq 1200 10 and and CC cord-010027-r0tl01kq 1200 11 cytokeratin cytokeratin NNP cord-010027-r0tl01kq 1200 12 is be VBZ cord-010027-r0tl01kq 1200 13 thought think VBN cord-010027-r0tl01kq 1200 14 to to TO cord-010027-r0tl01kq 1200 15 be be VB cord-010027-r0tl01kq 1200 16 mutually mutually RB cord-010027-r0tl01kq 1200 17 exclusive exclusive JJ cord-010027-r0tl01kq 1200 18 with with IN cord-010027-r0tl01kq 1200 19 CD45 CD45 NNP cord-010027-r0tl01kq 1200 20 expression expression NN cord-010027-r0tl01kq 1200 21 largely largely RB cord-010027-r0tl01kq 1200 22 restricted restrict VBN cord-010027-r0tl01kq 1200 23 to to IN cord-010027-r0tl01kq 1200 24 haematological haematological JJ cord-010027-r0tl01kq 1200 25 malignancies malignancy NNS cord-010027-r0tl01kq 1200 26 and and CC cord-010027-r0tl01kq 1200 27 cytokeratin cytokeratin NNP cord-010027-r0tl01kq 1200 28 expression expression NN cord-010027-r0tl01kq 1200 29 largely largely RB cord-010027-r0tl01kq 1200 30 restricted restrict VBN cord-010027-r0tl01kq 1200 31 to to IN cord-010027-r0tl01kq 1200 32 carcinomas carcinoma NNS cord-010027-r0tl01kq 1200 33 . . . cord-010027-r0tl01kq 1201 1 We -PRON- PRP cord-010027-r0tl01kq 1201 2 report report VBP cord-010027-r0tl01kq 1201 3 two two CD cord-010027-r0tl01kq 1201 4 clinically clinically RB cord-010027-r0tl01kq 1201 5 relevant relevant JJ cord-010027-r0tl01kq 1201 6 cases case NNS cord-010027-r0tl01kq 1201 7 . . . cord-010027-r0tl01kq 1202 1 The the DT cord-010027-r0tl01kq 1202 2 first first JJ cord-010027-r0tl01kq 1202 3 case case NN cord-010027-r0tl01kq 1202 4 is be VBZ cord-010027-r0tl01kq 1202 5 a a DT cord-010027-r0tl01kq 1202 6 urinary urinary JJ cord-010027-r0tl01kq 1202 7 bladder bladder NN cord-010027-r0tl01kq 1202 8 biopsy biopsy NN cord-010027-r0tl01kq 1202 9 showing show VBG cord-010027-r0tl01kq 1202 10 a a DT cord-010027-r0tl01kq 1202 11 high high JJ cord-010027-r0tl01kq 1202 12 grade grade NN cord-010027-r0tl01kq 1202 13 malignant malignant JJ cord-010027-r0tl01kq 1202 14 tumour tumour NN cord-010027-r0tl01kq 1202 15 with with IN cord-010027-r0tl01kq 1202 16 cells cell NNS cord-010027-r0tl01kq 1202 17 that that WDT cord-010027-r0tl01kq 1202 18 had have VBD cord-010027-r0tl01kq 1202 19 scanty scanty JJ cord-010027-r0tl01kq 1202 20 cytoplasm cytoplasm NN cord-010027-r0tl01kq 1202 21 , , , cord-010027-r0tl01kq 1202 22 hyperchromatic hyperchromatic JJ cord-010027-r0tl01kq 1202 23 stippled stippled JJ cord-010027-r0tl01kq 1202 24 nuclei nucleus NNS cord-010027-r0tl01kq 1202 25 and and CC cord-010027-r0tl01kq 1202 26 high high JJ cord-010027-r0tl01kq 1202 27 mitotic mitotic JJ cord-010027-r0tl01kq 1202 28 activity activity NN cord-010027-r0tl01kq 1202 29 . . . cord-010027-r0tl01kq 1203 1 Nuclear nuclear JJ cord-010027-r0tl01kq 1203 2 molding molding NN cord-010027-r0tl01kq 1203 3 was be VBD cord-010027-r0tl01kq 1203 4 present present JJ cord-010027-r0tl01kq 1203 5 . . . cord-010027-r0tl01kq 1204 1 The the DT cord-010027-r0tl01kq 1204 2 tumour tumour NN cord-010027-r0tl01kq 1204 3 cells cell NNS cord-010027-r0tl01kq 1204 4 showed show VBD cord-010027-r0tl01kq 1204 5 focal focal JJ cord-010027-r0tl01kq 1204 6 strong strong JJ cord-010027-r0tl01kq 1204 7 positivity positivity NN cord-010027-r0tl01kq 1204 8 for for IN cord-010027-r0tl01kq 1204 9 CK7 CK7 NNP cord-010027-r0tl01kq 1204 10 and and CC cord-010027-r0tl01kq 1204 11 diffuse diffuse VB cord-010027-r0tl01kq 1204 12 positivity positivity NN cord-010027-r0tl01kq 1204 13 for for IN cord-010027-r0tl01kq 1204 14 CD56 CD56 NNP cord-010027-r0tl01kq 1204 15 and and CC cord-010027-r0tl01kq 1204 16 synaptophysin synaptophysin NNS cord-010027-r0tl01kq 1204 17 . . . cord-010027-r0tl01kq 1205 1 Focal focal JJ cord-010027-r0tl01kq 1205 2 positivity positivity NN cord-010027-r0tl01kq 1205 3 for for IN cord-010027-r0tl01kq 1205 4 CD45 CD45 NNP cord-010027-r0tl01kq 1205 5 was be VBD cord-010027-r0tl01kq 1205 6 present present JJ cord-010027-r0tl01kq 1205 7 and and CC cord-010027-r0tl01kq 1205 8 confirmed confirm VBN cord-010027-r0tl01kq 1205 9 on on IN cord-010027-r0tl01kq 1205 10 repeat repeat NN cord-010027-r0tl01kq 1205 11 staining staining NN cord-010027-r0tl01kq 1205 12 . . . cord-010027-r0tl01kq 1206 1 The the DT cord-010027-r0tl01kq 1206 2 morphology morphology NN cord-010027-r0tl01kq 1206 3 and and CC cord-010027-r0tl01kq 1206 4 immunoprofile immunoprofile NN cord-010027-r0tl01kq 1206 5 was be VBD cord-010027-r0tl01kq 1206 6 consistent consistent JJ cord-010027-r0tl01kq 1206 7 with with IN cord-010027-r0tl01kq 1206 8 a a DT cord-010027-r0tl01kq 1206 9 small small JJ cord-010027-r0tl01kq 1206 10 cell cell NN cord-010027-r0tl01kq 1206 11 carcinoma carcinoma NN cord-010027-r0tl01kq 1206 12 showing show VBG cord-010027-r0tl01kq 1206 13 aberrant aberrant JJ cord-010027-r0tl01kq 1206 14 CD45 CD45 NNP cord-010027-r0tl01kq 1206 15 expression expression NN cord-010027-r0tl01kq 1206 16 . . . cord-010027-r0tl01kq 1207 1 The the DT cord-010027-r0tl01kq 1207 2 second second JJ cord-010027-r0tl01kq 1207 3 case case NN cord-010027-r0tl01kq 1207 4 is be VBZ cord-010027-r0tl01kq 1207 5 a a DT cord-010027-r0tl01kq 1207 6 maxillary maxillary JJ cord-010027-r0tl01kq 1207 7 tumour tumour NN cord-010027-r0tl01kq 1207 8 biopsy biopsy NN cord-010027-r0tl01kq 1207 9 composed compose VBN cord-010027-r0tl01kq 1207 10 of of IN cord-010027-r0tl01kq 1207 11 medium medium JJ cord-010027-r0tl01kq 1207 12 / / SYM cord-010027-r0tl01kq 1207 13 large large JJ cord-010027-r0tl01kq 1207 14 atypical atypical JJ cord-010027-r0tl01kq 1207 15 lymphoid lymphoid JJ cord-010027-r0tl01kq 1207 16 cells cell NNS cord-010027-r0tl01kq 1207 17 with with IN cord-010027-r0tl01kq 1207 18 hyperchromatic hyperchromatic JJ cord-010027-r0tl01kq 1207 19 nuclei nucleus NNS cord-010027-r0tl01kq 1207 20 , , , cord-010027-r0tl01kq 1207 21 small small JJ cord-010027-r0tl01kq 1207 22 nucleoli nucleolus NNS cord-010027-r0tl01kq 1207 23 and and CC cord-010027-r0tl01kq 1207 24 scanty scanty JJ cord-010027-r0tl01kq 1207 25 cytoplasm cytoplasm NN cord-010027-r0tl01kq 1207 26 . . . cord-010027-r0tl01kq 1208 1 Mitoses mitose NNS cord-010027-r0tl01kq 1208 2 and and CC cord-010027-r0tl01kq 1208 3 apoptotic apoptotic JJ cord-010027-r0tl01kq 1208 4 cells cell NNS cord-010027-r0tl01kq 1208 5 were be VBD cord-010027-r0tl01kq 1208 6 noted note VBN cord-010027-r0tl01kq 1208 7 . . . cord-010027-r0tl01kq 1209 1 Immunohistochemistry Immunohistochemistry NNP cord-010027-r0tl01kq 1209 2 showed show VBD cord-010027-r0tl01kq 1209 3 the the DT cord-010027-r0tl01kq 1209 4 atypical atypical JJ cord-010027-r0tl01kq 1209 5 cells cell NNS cord-010027-r0tl01kq 1209 6 to to TO cord-010027-r0tl01kq 1209 7 express express VB cord-010027-r0tl01kq 1209 8 CD20 CD20 NNP cord-010027-r0tl01kq 1209 9 , , , cord-010027-r0tl01kq 1209 10 CD79a CD79a NNP cord-010027-r0tl01kq 1209 11 , , , cord-010027-r0tl01kq 1209 12 Bcl6 Bcl6 NNP cord-010027-r0tl01kq 1209 13 and and CC cord-010027-r0tl01kq 1209 14 MUM1 MUM1 NNP cord-010027-r0tl01kq 1209 15 but but CC cord-010027-r0tl01kq 1209 16 not not RB cord-010027-r0tl01kq 1209 17 CD45 CD45 NNP cord-010027-r0tl01kq 1209 18 , , , cord-010027-r0tl01kq 1209 19 CD5 CD5 NNP cord-010027-r0tl01kq 1209 20 , , , cord-010027-r0tl01kq 1209 21 CD10 CD10 NNP cord-010027-r0tl01kq 1209 22 , , , cord-010027-r0tl01kq 1209 23 cyclin cyclin NN cord-010027-r0tl01kq 1209 24 D1 d1 NN cord-010027-r0tl01kq 1209 25 , , , cord-010027-r0tl01kq 1209 26 CD30 CD30 NNP cord-010027-r0tl01kq 1209 27 , , , cord-010027-r0tl01kq 1209 28 TdT tdt NN cord-010027-r0tl01kq 1209 29 , , , cord-010027-r0tl01kq 1209 30 ALK1 ALK1 NNP cord-010027-r0tl01kq 1209 31 , , , cord-010027-r0tl01kq 1209 32 CD2 CD2 NNP cord-010027-r0tl01kq 1209 33 , , , cord-010027-r0tl01kq 1209 34 CD3 CD3 NNP cord-010027-r0tl01kq 1209 35 , , , cord-010027-r0tl01kq 1209 36 neuroendocrine neuroendocrine JJ cord-010027-r0tl01kq 1209 37 or or CC cord-010027-r0tl01kq 1209 38 melanocytic melanocytic JJ cord-010027-r0tl01kq 1209 39 markers marker NNS cord-010027-r0tl01kq 1209 40 . . . cord-010027-r0tl01kq 1210 1 A a DT cord-010027-r0tl01kq 1210 2 high high JJ cord-010027-r0tl01kq 1210 3 Ki67 Ki67 NNP cord-010027-r0tl01kq 1210 4 proliferation proliferation NN cord-010027-r0tl01kq 1210 5 fraction fraction NN cord-010027-r0tl01kq 1210 6 was be VBD cord-010027-r0tl01kq 1210 7 present present JJ cord-010027-r0tl01kq 1210 8 . . . cord-010027-r0tl01kq 1211 1 The the DT cord-010027-r0tl01kq 1211 2 appearances appearance NNS cord-010027-r0tl01kq 1211 3 were be VBD cord-010027-r0tl01kq 1211 4 consistent consistent JJ cord-010027-r0tl01kq 1211 5 with with IN cord-010027-r0tl01kq 1211 6 a a DT cord-010027-r0tl01kq 1211 7 diffuse diffuse JJ cord-010027-r0tl01kq 1211 8 large large JJ cord-010027-r0tl01kq 1211 9 B b NN cord-010027-r0tl01kq 1211 10 - - HYPH cord-010027-r0tl01kq 1211 11 cell cell NN cord-010027-r0tl01kq 1211 12 lymphoma lymphoma NN cord-010027-r0tl01kq 1211 13 . . . cord-010027-r0tl01kq 1212 1 The the DT cord-010027-r0tl01kq 1212 2 above above JJ cord-010027-r0tl01kq 1212 3 cases case NNS cord-010027-r0tl01kq 1212 4 highlight highlight VBP cord-010027-r0tl01kq 1212 5 the the DT cord-010027-r0tl01kq 1212 6 possibility possibility NN cord-010027-r0tl01kq 1212 7 of of IN cord-010027-r0tl01kq 1212 8 aberrant aberrant JJ cord-010027-r0tl01kq 1212 9 expression expression NN cord-010027-r0tl01kq 1212 10 as as RB cord-010027-r0tl01kq 1212 11 well well RB cord-010027-r0tl01kq 1212 12 as as IN cord-010027-r0tl01kq 1212 13 loss loss NN cord-010027-r0tl01kq 1212 14 of of IN cord-010027-r0tl01kq 1212 15 expression expression NN cord-010027-r0tl01kq 1212 16 of of IN cord-010027-r0tl01kq 1212 17 immunohistochemical immunohistochemical JJ cord-010027-r0tl01kq 1212 18 markers marker NNS cord-010027-r0tl01kq 1212 19 by by IN cord-010027-r0tl01kq 1212 20 neoplastic neoplastic JJ cord-010027-r0tl01kq 1212 21 cells cell NNS cord-010027-r0tl01kq 1212 22 in in IN cord-010027-r0tl01kq 1212 23 undifferentiated undifferentiated JJ cord-010027-r0tl01kq 1212 24 malignancies malignancy NNS cord-010027-r0tl01kq 1212 25 . . . cord-010027-r0tl01kq 1213 1 Attention attention NN cord-010027-r0tl01kq 1213 2 to to IN cord-010027-r0tl01kq 1213 3 tumour tumour NN cord-010027-r0tl01kq 1213 4 morphology morphology NN cord-010027-r0tl01kq 1213 5 may may MD cord-010027-r0tl01kq 1213 6 provide provide VB cord-010027-r0tl01kq 1213 7 diagnostic diagnostic JJ cord-010027-r0tl01kq 1213 8 clues clue NNS cord-010027-r0tl01kq 1213 9 . . . cord-010027-r0tl01kq 1214 1 Interpretation interpretation NN cord-010027-r0tl01kq 1214 2 of of IN cord-010027-r0tl01kq 1214 3 immunohistochemistry immunohistochemistry NN cord-010027-r0tl01kq 1214 4 in in IN cord-010027-r0tl01kq 1214 5 the the DT cord-010027-r0tl01kq 1214 6 context context NN cord-010027-r0tl01kq 1214 7 of of IN cord-010027-r0tl01kq 1214 8 tumour tumour NN cord-010027-r0tl01kq 1214 9 morphology morphology NN cord-010027-r0tl01kq 1214 10 as as RB cord-010027-r0tl01kq 1214 11 well well RB cord-010027-r0tl01kq 1214 12 as as IN cord-010027-r0tl01kq 1214 13 awareness awareness NN cord-010027-r0tl01kq 1214 14 of of IN cord-010027-r0tl01kq 1214 15 aberrant aberrant JJ cord-010027-r0tl01kq 1214 16 expression expression NN cord-010027-r0tl01kq 1214 17 / / SYM cord-010027-r0tl01kq 1214 18 loss loss NN cord-010027-r0tl01kq 1214 19 of of IN cord-010027-r0tl01kq 1214 20 expression expression NN cord-010027-r0tl01kq 1214 21 can can MD cord-010027-r0tl01kq 1214 22 help help VB cord-010027-r0tl01kq 1214 23 avoid avoid VB cord-010027-r0tl01kq 1214 24 diagnostic diagnostic JJ cord-010027-r0tl01kq 1214 25 error error NN cord-010027-r0tl01kq 1214 26 . . . cord-010027-r0tl01kq 1215 1 Accurate accurate JJ cord-010027-r0tl01kq 1215 2 , , , cord-010027-r0tl01kq 1215 3 timely timely JJ cord-010027-r0tl01kq 1215 4 diagnosis diagnosis NN cord-010027-r0tl01kq 1215 5 is be VBZ cord-010027-r0tl01kq 1215 6 the the DT cord-010027-r0tl01kq 1215 7 ultimate ultimate JJ cord-010027-r0tl01kq 1215 8 aim aim NN cord-010027-r0tl01kq 1215 9 in in IN cord-010027-r0tl01kq 1215 10 surgical surgical JJ cord-010027-r0tl01kq 1215 11 pathology pathology NN cord-010027-r0tl01kq 1215 12 . . . cord-010027-r0tl01kq 1216 1 Numerous numerous JJ cord-010027-r0tl01kq 1216 2 histological histological JJ cord-010027-r0tl01kq 1216 3 pitfalls pitfall NNS cord-010027-r0tl01kq 1216 4 and and CC cord-010027-r0tl01kq 1216 5 lesional lesional JJ cord-010027-r0tl01kq 1216 6 mimics mimic NNS cord-010027-r0tl01kq 1216 7 exist exist VBP cord-010027-r0tl01kq 1216 8 , , , cord-010027-r0tl01kq 1216 9 with with IN cord-010027-r0tl01kq 1216 10 the the DT cord-010027-r0tl01kq 1216 11 need need NN cord-010027-r0tl01kq 1216 12 to to TO cord-010027-r0tl01kq 1216 13 maintain maintain VB cord-010027-r0tl01kq 1216 14 an an DT cord-010027-r0tl01kq 1216 15 awareness awareness NN cord-010027-r0tl01kq 1216 16 of of IN cord-010027-r0tl01kq 1216 17 such such JJ cord-010027-r0tl01kq 1216 18 entities entity NNS cord-010027-r0tl01kq 1216 19 vital vital JJ cord-010027-r0tl01kq 1216 20 if if IN cord-010027-r0tl01kq 1216 21 potentially potentially RB cord-010027-r0tl01kq 1216 22 serious serious JJ cord-010027-r0tl01kq 1216 23 misdiagnoses misdiagnose NNS cord-010027-r0tl01kq 1216 24 are be VBP cord-010027-r0tl01kq 1216 25 to to TO cord-010027-r0tl01kq 1216 26 be be VB cord-010027-r0tl01kq 1216 27 avoided avoid VBN cord-010027-r0tl01kq 1216 28 . . . cord-010027-r0tl01kq 1217 1 This this DT cord-010027-r0tl01kq 1217 2 case case NN cord-010027-r0tl01kq 1217 3 report report NN cord-010027-r0tl01kq 1217 4 describes describe VBZ cord-010027-r0tl01kq 1217 5 two two CD cord-010027-r0tl01kq 1217 6 distinct distinct JJ cord-010027-r0tl01kq 1217 7 lesions lesion NNS cord-010027-r0tl01kq 1217 8 within within IN cord-010027-r0tl01kq 1217 9 the the DT cord-010027-r0tl01kq 1217 10 same same JJ cord-010027-r0tl01kq 1217 11 lymph lymph NN cord-010027-r0tl01kq 1217 12 node node NN cord-010027-r0tl01kq 1217 13 , , , cord-010027-r0tl01kq 1217 14 both both DT cord-010027-r0tl01kq 1217 15 of of IN cord-010027-r0tl01kq 1217 16 which which WDT cord-010027-r0tl01kq 1217 17 are be VBP cord-010027-r0tl01kq 1217 18 potential potential JJ cord-010027-r0tl01kq 1217 19 mimics mimic NNS cord-010027-r0tl01kq 1217 20 of of IN cord-010027-r0tl01kq 1217 21 each each DT cord-010027-r0tl01kq 1217 22 other other JJ cord-010027-r0tl01kq 1217 23 . . . cord-010027-r0tl01kq 1218 1 A a DT cord-010027-r0tl01kq 1218 2 43 43 CD cord-010027-r0tl01kq 1218 3 year year NN cord-010027-r0tl01kq 1218 4 old old JJ cord-010027-r0tl01kq 1218 5 female female NN cord-010027-r0tl01kq 1218 6 presented present VBN cord-010027-r0tl01kq 1218 7 with with IN cord-010027-r0tl01kq 1218 8 a a DT cord-010027-r0tl01kq 1218 9 three three CD cord-010027-r0tl01kq 1218 10 week week NN cord-010027-r0tl01kq 1218 11 history history NN cord-010027-r0tl01kq 1218 12 of of IN cord-010027-r0tl01kq 1218 13 a a DT cord-010027-r0tl01kq 1218 14 left left JJ cord-010027-r0tl01kq 1218 15 breast breast NN cord-010027-r0tl01kq 1218 16 lump lump NN cord-010027-r0tl01kq 1218 17 . . . cord-010027-r0tl01kq 1219 1 She -PRON- PRP cord-010027-r0tl01kq 1219 2 had have VBD cord-010027-r0tl01kq 1219 3 no no DT cord-010027-r0tl01kq 1219 4 known know VBN cord-010027-r0tl01kq 1219 5 previous previous JJ cord-010027-r0tl01kq 1219 6 breast breast NN cord-010027-r0tl01kq 1219 7 disease disease NN cord-010027-r0tl01kq 1219 8 or or CC cord-010027-r0tl01kq 1219 9 any any DT cord-010027-r0tl01kq 1219 10 associated associated JJ cord-010027-r0tl01kq 1219 11 risk risk NN cord-010027-r0tl01kq 1219 12 factors factor NNS cord-010027-r0tl01kq 1219 13 . . . cord-010027-r0tl01kq 1220 1 A a DT cord-010027-r0tl01kq 1220 2 needle needle NN cord-010027-r0tl01kq 1220 3 core core NN cord-010027-r0tl01kq 1220 4 biopsy biopsy NN cord-010027-r0tl01kq 1220 5 of of IN cord-010027-r0tl01kq 1220 6 this this DT cord-010027-r0tl01kq 1220 7 clinically clinically RB cord-010027-r0tl01kq 1220 8 and and CC cord-010027-r0tl01kq 1220 9 radiologically radiologically RB cord-010027-r0tl01kq 1220 10 suspicious suspicious JJ cord-010027-r0tl01kq 1220 11 mass mass NN cord-010027-r0tl01kq 1220 12 yielded yield VBD cord-010027-r0tl01kq 1220 13 a a DT cord-010027-r0tl01kq 1220 14 diagnosis diagnosis NN cord-010027-r0tl01kq 1220 15 of of IN cord-010027-r0tl01kq 1220 16 grade grade NN cord-010027-r0tl01kq 1220 17 2 2 CD cord-010027-r0tl01kq 1220 18 invasive invasive JJ cord-010027-r0tl01kq 1220 19 lobular lobular JJ cord-010027-r0tl01kq 1220 20 carcinoma carcinoma NN cord-010027-r0tl01kq 1220 21 . . . cord-010027-r0tl01kq 1221 1 Left leave VBN cord-010027-r0tl01kq 1221 2 axillary axillary JJ cord-010027-r0tl01kq 1221 3 sentinel sentinel NN cord-010027-r0tl01kq 1221 4 node node NN cord-010027-r0tl01kq 1221 5 biopsy biopsy NNP cord-010027-r0tl01kq 1221 6 was be VBD cord-010027-r0tl01kq 1221 7 thus thus RB cord-010027-r0tl01kq 1221 8 undertaken undertake VBN cord-010027-r0tl01kq 1221 9 . . . cord-010027-r0tl01kq 1222 1 Two two CD cord-010027-r0tl01kq 1222 2 hot hot JJ cord-010027-r0tl01kq 1222 3 and and CC cord-010027-r0tl01kq 1222 4 blue blue JJ cord-010027-r0tl01kq 1222 5 sentinel sentinel JJ cord-010027-r0tl01kq 1222 6 lymph lymph NN cord-010027-r0tl01kq 1222 7 nodes node NNS cord-010027-r0tl01kq 1222 8 were be VBD cord-010027-r0tl01kq 1222 9 excised excise VBN cord-010027-r0tl01kq 1222 10 . . . cord-010027-r0tl01kq 1223 1 One one CD cord-010027-r0tl01kq 1223 2 was be VBD cord-010027-r0tl01kq 1223 3 free free JJ cord-010027-r0tl01kq 1223 4 of of IN cord-010027-r0tl01kq 1223 5 neoplasia neoplasia NN cord-010027-r0tl01kq 1223 6 , , , cord-010027-r0tl01kq 1223 7 the the DT cord-010027-r0tl01kq 1223 8 second second NN cord-010027-r0tl01kq 1223 9 contained contain VBD cord-010027-r0tl01kq 1223 10 benign benign JJ cord-010027-r0tl01kq 1223 11 naevus naevus NN cord-010027-r0tl01kq 1223 12 cell cell NN cord-010027-r0tl01kq 1223 13 inclusions inclusion NNS cord-010027-r0tl01kq 1223 14 within within IN cord-010027-r0tl01kq 1223 15 the the DT cord-010027-r0tl01kq 1223 16 capsule capsule NN cord-010027-r0tl01kq 1223 17 together together RB cord-010027-r0tl01kq 1223 18 with with IN cord-010027-r0tl01kq 1223 19 a a DT cord-010027-r0tl01kq 1223 20 micrometastasis micrometastasis NN cord-010027-r0tl01kq 1223 21 . . . cord-010027-r0tl01kq 1224 1 Immunocytochemistry Immunocytochemistry NNP cord-010027-r0tl01kq 1224 2 confirmed confirm VBD cord-010027-r0tl01kq 1224 3 the the DT cord-010027-r0tl01kq 1224 4 presence presence NN cord-010027-r0tl01kq 1224 5 of of IN cord-010027-r0tl01kq 1224 6 two two CD cord-010027-r0tl01kq 1224 7 distinct distinct JJ cord-010027-r0tl01kq 1224 8 cell cell NN cord-010027-r0tl01kq 1224 9 populations population NNS cord-010027-r0tl01kq 1224 10 ; ; : cord-010027-r0tl01kq 1224 11 the the DT cord-010027-r0tl01kq 1224 12 benign benign JJ cord-010027-r0tl01kq 1224 13 naevus naevus NN cord-010027-r0tl01kq 1224 14 inclusion inclusion NN cord-010027-r0tl01kq 1224 15 cells cell NNS cord-010027-r0tl01kq 1224 16 stained stain VBN cord-010027-r0tl01kq 1224 17 positively positively RB cord-010027-r0tl01kq 1224 18 for for IN cord-010027-r0tl01kq 1224 19 S100 S100 NNP cord-010027-r0tl01kq 1225 1 but but CC cord-010027-r0tl01kq 1225 2 not not RB cord-010027-r0tl01kq 1225 3 for for IN cord-010027-r0tl01kq 1226 1 AE1/3 AE1/3 NNP cord-010027-r0tl01kq 1226 2 , , , cord-010027-r0tl01kq 1226 3 the the DT cord-010027-r0tl01kq 1226 4 reverse reverse JJ cord-010027-r0tl01kq 1226 5 pattern pattern NN cord-010027-r0tl01kq 1226 6 was be VBD cord-010027-r0tl01kq 1226 7 observed observe VBN cord-010027-r0tl01kq 1226 8 in in IN cord-010027-r0tl01kq 1226 9 the the DT cord-010027-r0tl01kq 1226 10 invasive invasive JJ cord-010027-r0tl01kq 1226 11 lobular lobular JJ cord-010027-r0tl01kq 1226 12 carcinoma carcinoma NN cord-010027-r0tl01kq 1226 13 cells cell NNS cord-010027-r0tl01kq 1226 14 . . . cord-010027-r0tl01kq 1227 1 Heterotrophic heterotrophic JJ cord-010027-r0tl01kq 1227 2 benign benign JJ cord-010027-r0tl01kq 1227 3 inclusions inclusion NNS cord-010027-r0tl01kq 1227 4 within within IN cord-010027-r0tl01kq 1227 5 lymph lymph NN cord-010027-r0tl01kq 1227 6 nodes node NNS cord-010027-r0tl01kq 1227 7 are be VBP cord-010027-r0tl01kq 1227 8 an an DT cord-010027-r0tl01kq 1227 9 infrequent infrequent JJ cord-010027-r0tl01kq 1227 10 yet yet RB cord-010027-r0tl01kq 1227 11 well well RB cord-010027-r0tl01kq 1227 12 recognised recognise VBN cord-010027-r0tl01kq 1227 13 entity entity NN cord-010027-r0tl01kq 1227 14 . . . cord-010027-r0tl01kq 1228 1 Ridolfi Ridolfi NNP cord-010027-r0tl01kq 1228 2 et et NNP cord-010027-r0tl01kq 1228 3 al al NNP cord-010027-r0tl01kq 1228 4 reviewed review VBD cord-010027-r0tl01kq 1228 5 the the DT cord-010027-r0tl01kq 1228 6 lymph lymph NN cord-010027-r0tl01kq 1228 7 nodes node NNS cord-010027-r0tl01kq 1228 8 from from IN cord-010027-r0tl01kq 1228 9 909 909 CD cord-010027-r0tl01kq 1228 10 axillary axillary JJ cord-010027-r0tl01kq 1228 11 surgery surgery NN cord-010027-r0tl01kq 1228 12 patients patient NNS cord-010027-r0tl01kq 1228 13 and and CC cord-010027-r0tl01kq 1228 14 found find VBD cord-010027-r0tl01kq 1228 15 0.017 0.017 CD cord-010027-r0tl01kq 1228 16 % % NN cord-010027-r0tl01kq 1228 17 of of IN cord-010027-r0tl01kq 1228 18 lymph lymph NN cord-010027-r0tl01kq 1228 19 nodes node NNS cord-010027-r0tl01kq 1228 20 contained contain VBD cord-010027-r0tl01kq 1228 21 benign benign JJ cord-010027-r0tl01kq 1228 22 naevus naevus NN cord-010027-r0tl01kq 1228 23 cell cell NN cord-010027-r0tl01kq 1228 24 inclusions inclusion NNS cord-010027-r0tl01kq 1228 25 . . . cord-010027-r0tl01kq 1229 1 Small small JJ cord-010027-r0tl01kq 1229 2 benign benign JJ cord-010027-r0tl01kq 1229 3 naevus naevus NN cord-010027-r0tl01kq 1229 4 cells cell NNS cord-010027-r0tl01kq 1229 5 within within IN cord-010027-r0tl01kq 1229 6 the the DT cord-010027-r0tl01kq 1229 7 capsule capsule NN cord-010027-r0tl01kq 1229 8 of of IN cord-010027-r0tl01kq 1229 9 a a DT cord-010027-r0tl01kq 1229 10 lymph lymph NN cord-010027-r0tl01kq 1229 11 node node NN cord-010027-r0tl01kq 1229 12 can can MD cord-010027-r0tl01kq 1229 13 resemble resemble VB cord-010027-r0tl01kq 1229 14 the the DT cord-010027-r0tl01kq 1229 15 ' ' `` cord-010027-r0tl01kq 1229 16 Indian indian JJ cord-010027-r0tl01kq 1229 17 file file NN cord-010027-r0tl01kq 1229 18 ' ' '' cord-010027-r0tl01kq 1229 19 pattern pattern NN cord-010027-r0tl01kq 1229 20 of of IN cord-010027-r0tl01kq 1229 21 classic classic JJ cord-010027-r0tl01kq 1229 22 invasive invasive JJ cord-010027-r0tl01kq 1229 23 lobular lobular JJ cord-010027-r0tl01kq 1229 24 carcinoma carcinoma NN cord-010027-r0tl01kq 1229 25 . . . cord-010027-r0tl01kq 1230 1 This this DT cord-010027-r0tl01kq 1230 2 case case NN cord-010027-r0tl01kq 1230 3 is be VBZ cord-010027-r0tl01kq 1230 4 unusual unusual JJ cord-010027-r0tl01kq 1230 5 in in IN cord-010027-r0tl01kq 1230 6 that that IN cord-010027-r0tl01kq 1230 7 both both DT cord-010027-r0tl01kq 1230 8 metastatic metastatic JJ cord-010027-r0tl01kq 1230 9 carcinoma carcinoma NN cord-010027-r0tl01kq 1230 10 and and CC cord-010027-r0tl01kq 1230 11 benign benign JJ cord-010027-r0tl01kq 1230 12 naevus naevus NN cord-010027-r0tl01kq 1230 13 inclusion inclusion NN cord-010027-r0tl01kq 1230 14 cells cell NNS cord-010027-r0tl01kq 1230 15 were be VBD cord-010027-r0tl01kq 1230 16 present present JJ cord-010027-r0tl01kq 1230 17 within within IN cord-010027-r0tl01kq 1230 18 the the DT cord-010027-r0tl01kq 1230 19 same same JJ cord-010027-r0tl01kq 1230 20 lymph lymph NN cord-010027-r0tl01kq 1230 21 node node NN cord-010027-r0tl01kq 1230 22 , , , cord-010027-r0tl01kq 1230 23 enabling enable VBG cord-010027-r0tl01kq 1230 24 a a DT cord-010027-r0tl01kq 1230 25 clear clear JJ cord-010027-r0tl01kq 1230 26 comparison comparison NN cord-010027-r0tl01kq 1230 27 of of IN cord-010027-r0tl01kq 1230 28 the the DT cord-010027-r0tl01kq 1230 29 cytomorphology cytomorphology NN cord-010027-r0tl01kq 1230 30 and and CC cord-010027-r0tl01kq 1230 31 immunoprofile immunoprofile NN cord-010027-r0tl01kq 1230 32 of of IN cord-010027-r0tl01kq 1230 33 these these DT cord-010027-r0tl01kq 1230 34 two two CD cord-010027-r0tl01kq 1230 35 distinct distinct JJ cord-010027-r0tl01kq 1230 36 lesions lesion NNS cord-010027-r0tl01kq 1230 37 . . . cord-010027-r0tl01kq 1231 1 An an DT cord-010027-r0tl01kq 1231 2 awareness awareness NN cord-010027-r0tl01kq 1231 3 of of IN cord-010027-r0tl01kq 1231 4 benign benign JJ cord-010027-r0tl01kq 1231 5 inclusions inclusion NNS cord-010027-r0tl01kq 1231 6 within within IN cord-010027-r0tl01kq 1231 7 lymph lymph NN cord-010027-r0tl01kq 1231 8 nodes node NNS cord-010027-r0tl01kq 1231 9 helps help VBZ cord-010027-r0tl01kq 1231 10 to to TO cord-010027-r0tl01kq 1231 11 avoid avoid VB cord-010027-r0tl01kq 1231 12 the the DT cord-010027-r0tl01kq 1231 13 potential potential NN cord-010027-r0tl01kq 1231 14 for for IN cord-010027-r0tl01kq 1231 15 misdiagnosis misdiagnosis NN cord-010027-r0tl01kq 1231 16 . . . cord-010027-r0tl01kq 1232 1 The the DT cord-010027-r0tl01kq 1232 2 judicious judicious JJ cord-010027-r0tl01kq 1232 3 use use NN cord-010027-r0tl01kq 1232 4 of of IN cord-010027-r0tl01kq 1232 5 immunocytochemistry immunocytochemistry NN cord-010027-r0tl01kq 1232 6 can can MD cord-010027-r0tl01kq 1232 7 be be VB cord-010027-r0tl01kq 1232 8 useful useful JJ cord-010027-r0tl01kq 1232 9 in in IN cord-010027-r0tl01kq 1232 10 distinguishing distinguish VBG cord-010027-r0tl01kq 1232 11 benign benign JJ cord-010027-r0tl01kq 1232 12 inclusions inclusion NNS cord-010027-r0tl01kq 1232 13 from from IN cord-010027-r0tl01kq 1232 14 carcinoma carcinoma NN cord-010027-r0tl01kq 1232 15 . . . cord-010027-r0tl01kq 1233 1 Recently recently RB cord-010027-r0tl01kq 1233 2 there there EX cord-010027-r0tl01kq 1233 3 has have VBZ cord-010027-r0tl01kq 1233 4 been be VBN cord-010027-r0tl01kq 1233 5 increasing increase VBG cord-010027-r0tl01kq 1233 6 recognition recognition NN cord-010027-r0tl01kq 1233 7 of of IN cord-010027-r0tl01kq 1233 8 distinct distinct JJ cord-010027-r0tl01kq 1233 9 breast breast NN cord-010027-r0tl01kq 1233 10 cancer cancer NN cord-010027-r0tl01kq 1233 11 phenotypes phenotype NNS cord-010027-r0tl01kq 1233 12 . . . cord-010027-r0tl01kq 1234 1 Of of IN cord-010027-r0tl01kq 1234 2 these these DT cord-010027-r0tl01kq 1234 3 , , , cord-010027-r0tl01kq 1234 4 Basal Basal NNP cord-010027-r0tl01kq 1234 5 phenotype phenotype NN cord-010027-r0tl01kq 1234 6 breast breast NN cord-010027-r0tl01kq 1234 7 cancer cancer NN cord-010027-r0tl01kq 1234 8 ( ( -LRB- cord-010027-r0tl01kq 1234 9 BBC BBC NNP cord-010027-r0tl01kq 1234 10 ) ) -RRB- cord-010027-r0tl01kq 1234 11 has have VBZ cord-010027-r0tl01kq 1234 12 attracted attract VBN cord-010027-r0tl01kq 1234 13 particular particular JJ cord-010027-r0tl01kq 1234 14 interest interest NN cord-010027-r0tl01kq 1234 15 since since IN cord-010027-r0tl01kq 1234 16 the the DT cord-010027-r0tl01kq 1234 17 majority majority NN cord-010027-r0tl01kq 1234 18 are be VBP cord-010027-r0tl01kq 1234 19 triple triple JJ cord-010027-r0tl01kq 1234 20 negative negative JJ cord-010027-r0tl01kq 1234 21 ( ( -LRB- cord-010027-r0tl01kq 1234 22 TN TN NNP cord-010027-r0tl01kq 1234 23 ) ) -RRB- cord-010027-r0tl01kq 1234 24 ; ; : cord-010027-r0tl01kq 1234 25 have have VBP cord-010027-r0tl01kq 1234 26 an an DT cord-010027-r0tl01kq 1234 27 aggressive aggressive JJ cord-010027-r0tl01kq 1234 28 natural natural JJ cord-010027-r0tl01kq 1234 29 history history NN cord-010027-r0tl01kq 1234 30 and and CC cord-010027-r0tl01kq 1234 31 can can MD cord-010027-r0tl01kq 1234 32 be be VB cord-010027-r0tl01kq 1234 33 associated associate VBN cord-010027-r0tl01kq 1234 34 with with IN cord-010027-r0tl01kq 1234 35 BRCA1 BRCA1 NNP cord-010027-r0tl01kq 1234 36 germline germline NNP cord-010027-r0tl01kq 1234 37 mutation mutation NN cord-010027-r0tl01kq 1234 38 . . . cord-010027-r0tl01kq 1235 1 This this DT cord-010027-r0tl01kq 1235 2 area area NN cord-010027-r0tl01kq 1235 3 is be VBZ cord-010027-r0tl01kq 1235 4 mired mire VBN cord-010027-r0tl01kq 1235 5 in in IN cord-010027-r0tl01kq 1235 6 difficulty difficulty NN cord-010027-r0tl01kq 1235 7 , , , cord-010027-r0tl01kq 1235 8 as as IN cord-010027-r0tl01kq 1235 9 a a DT cord-010027-r0tl01kq 1235 10 precise precise JJ cord-010027-r0tl01kq 1235 11 unifying unifying JJ cord-010027-r0tl01kq 1235 12 definition definition NN cord-010027-r0tl01kq 1235 13 of of IN cord-010027-r0tl01kq 1235 14 BBC BBC NNP cord-010027-r0tl01kq 1235 15 remains remain VBZ cord-010027-r0tl01kq 1235 16 elusive elusive JJ cord-010027-r0tl01kq 1235 17 . . . cord-010027-r0tl01kq 1236 1 Several several JJ cord-010027-r0tl01kq 1236 2 morphological morphological JJ cord-010027-r0tl01kq 1236 3 features feature NNS cord-010027-r0tl01kq 1236 4 more more RBR cord-010027-r0tl01kq 1236 5 prevalent prevalent JJ cord-010027-r0tl01kq 1236 6 in in IN cord-010027-r0tl01kq 1236 7 BBC BBC NNP cord-010027-r0tl01kq 1236 8 have have VBP cord-010027-r0tl01kq 1236 9 been be VBN cord-010027-r0tl01kq 1236 10 identified identify VBN cord-010027-r0tl01kq 1236 11 . . . cord-010027-r0tl01kq 1237 1 In in IN cord-010027-r0tl01kq 1237 2 our -PRON- PRP$ cord-010027-r0tl01kq 1237 3 practise practise NN cord-010027-r0tl01kq 1237 4 we -PRON- PRP cord-010027-r0tl01kq 1237 5 noticed notice VBD cord-010027-r0tl01kq 1237 6 variable variable JJ cord-010027-r0tl01kq 1237 7 use use NN cord-010027-r0tl01kq 1237 8 of of IN cord-010027-r0tl01kq 1237 9 ' ' `` cord-010027-r0tl01kq 1237 10 basal basal NN cord-010027-r0tl01kq 1237 11 ' ' '' cord-010027-r0tl01kq 1237 12 in in IN cord-010027-r0tl01kq 1237 13 reports report NNS cord-010027-r0tl01kq 1237 14 . . . cord-010027-r0tl01kq 1238 1 Given give VBN cord-010027-r0tl01kq 1238 2 this this DT cord-010027-r0tl01kq 1238 3 , , , cord-010027-r0tl01kq 1238 4 whilst whilst IN cord-010027-r0tl01kq 1238 5 no no DT cord-010027-r0tl01kq 1238 6 specific specific JJ cord-010027-r0tl01kq 1238 7 therapies therapy NNS cord-010027-r0tl01kq 1238 8 to to IN cord-010027-r0tl01kq 1238 9 BBC BBC NNP cord-010027-r0tl01kq 1238 10 currently currently RB cord-010027-r0tl01kq 1238 11 exist exist VBP cord-010027-r0tl01kq 1238 12 , , , cord-010027-r0tl01kq 1238 13 we -PRON- PRP cord-010027-r0tl01kq 1238 14 felt feel VBD cord-010027-r0tl01kq 1238 15 it -PRON- PRP cord-010027-r0tl01kq 1238 16 necessary necessary JJ cord-010027-r0tl01kq 1238 17 to to TO cord-010027-r0tl01kq 1238 18 understand understand VB cord-010027-r0tl01kq 1238 19 how how WRB cord-010027-r0tl01kq 1238 20 accurate accurate JJ cord-010027-r0tl01kq 1238 21 our -PRON- PRP$ cord-010027-r0tl01kq 1238 22 designations designation NNS cord-010027-r0tl01kq 1238 23 have have VBP cord-010027-r0tl01kq 1238 24 been be VBN cord-010027-r0tl01kq 1238 25 and and CC cord-010027-r0tl01kq 1238 26 whether whether IN cord-010027-r0tl01kq 1238 27 this this DT cord-010027-r0tl01kq 1238 28 is be VBZ cord-010027-r0tl01kq 1238 29 a a DT cord-010027-r0tl01kq 1238 30 worthwhile worthwhile JJ cord-010027-r0tl01kq 1238 31 practise practise NN cord-010027-r0tl01kq 1238 32 . . . cord-010027-r0tl01kq 1239 1 Method method NN cord-010027-r0tl01kq 1239 2 : : : cord-010027-r0tl01kq 1240 1 The the DT cord-010027-r0tl01kq 1240 2 diagnostic diagnostic JJ cord-010027-r0tl01kq 1240 3 database database NN cord-010027-r0tl01kq 1240 4 was be VBD cord-010027-r0tl01kq 1240 5 searched search VBN cord-010027-r0tl01kq 1240 6 for for IN cord-010027-r0tl01kq 1240 7 all all DT cord-010027-r0tl01kq 1240 8 malignant malignant JJ cord-010027-r0tl01kq 1240 9 TN TN NNP cord-010027-r0tl01kq 1240 10 breast breast NN cord-010027-r0tl01kq 1240 11 resections resection NNS cord-010027-r0tl01kq 1240 12 or or CC cord-010027-r0tl01kq 1240 13 reports report NNS cord-010027-r0tl01kq 1240 14 containing contain VBG cord-010027-r0tl01kq 1240 15 the the DT cord-010027-r0tl01kq 1240 16 word word NN cord-010027-r0tl01kq 1240 17 ' ' `` cord-010027-r0tl01kq 1240 18 basal basal NN cord-010027-r0tl01kq 1240 19 ' ' '' cord-010027-r0tl01kq 1240 20 within within IN cord-010027-r0tl01kq 1240 21 12-months 12-month NNS cord-010027-r0tl01kq 1240 22 . . . cord-010027-r0tl01kq 1241 1 TN TN NNP cord-010027-r0tl01kq 1241 2 was be VBD cord-010027-r0tl01kq 1241 3 defined define VBN cord-010027-r0tl01kq 1241 4 as as IN cord-010027-r0tl01kq 1241 5 Allred Allred NNP cord-010027-r0tl01kq 1241 6 score score NN cord-010027-r0tl01kq 1241 7 ER ER NNP cord-010027-r0tl01kq 1241 8 0 0 CD cord-010027-r0tl01kq 1241 9 - - HYPH cord-010027-r0tl01kq 1241 10 2/8 2/8 CD cord-010027-r0tl01kq 1241 11 , , , cord-010027-r0tl01kq 1241 12 PR PR NNP cord-010027-r0tl01kq 1241 13 0 0 CD cord-010027-r0tl01kq 1241 14 - - HYPH cord-010027-r0tl01kq 1241 15 2/8 2/8 CD cord-010027-r0tl01kq 1241 16 and and CC cord-010027-r0tl01kq 1241 17 HER2 HER2 NNP cord-010027-r0tl01kq 1241 18 0 0 CD cord-010027-r0tl01kq 1241 19 , , , cord-010027-r0tl01kq 1241 20 1 1 CD cord-010027-r0tl01kq 1241 21 + + SYM cord-010027-r0tl01kq 1241 22 or or CC cord-010027-r0tl01kq 1241 23 2 2 CD cord-010027-r0tl01kq 1241 24 + + CC cord-010027-r0tl01kq 1241 25 negative negative JJ cord-010027-r0tl01kq 1241 26 on on IN cord-010027-r0tl01kq 1241 27 FISH fish NN cord-010027-r0tl01kq 1241 28 . . . cord-010027-r0tl01kq 1242 1 For for IN cord-010027-r0tl01kq 1242 2 completeness completeness NN cord-010027-r0tl01kq 1242 3 , , , cord-010027-r0tl01kq 1242 4 we -PRON- PRP cord-010027-r0tl01kq 1242 5 considered consider VBD cord-010027-r0tl01kq 1242 6 including include VBG cord-010027-r0tl01kq 1242 7 all all DT cord-010027-r0tl01kq 1242 8 breast breast NN cord-010027-r0tl01kq 1242 9 cancers cancer NNS cord-010027-r0tl01kq 1242 10 , , , cord-010027-r0tl01kq 1242 11 but but CC cord-010027-r0tl01kq 1242 12 pragmatically pragmatically RB cord-010027-r0tl01kq 1242 13 this this DT cord-010027-r0tl01kq 1242 14 was be VBD cord-010027-r0tl01kq 1242 15 not not RB cord-010027-r0tl01kq 1242 16 possible possible JJ cord-010027-r0tl01kq 1242 17 . . . cord-010027-r0tl01kq 1243 1 We -PRON- PRP cord-010027-r0tl01kq 1243 2 carried carry VBD cord-010027-r0tl01kq 1243 3 out out RP cord-010027-r0tl01kq 1243 4 CK5 ck5 NN cord-010027-r0tl01kq 1243 5 and and CC cord-010027-r0tl01kq 1243 6 CK14 CK14 NNP cord-010027-r0tl01kq 1243 7 staining stain VBG cord-010027-r0tl01kq 1243 8 on on IN cord-010027-r0tl01kq 1243 9 all all DT cord-010027-r0tl01kq 1243 10 cases case NNS cord-010027-r0tl01kq 1243 11 where where WRB cord-010027-r0tl01kq 1243 12 not not RB cord-010027-r0tl01kq 1243 13 performed perform VBN cord-010027-r0tl01kq 1243 14 . . . cord-010027-r0tl01kq 1244 1 Results result NNS cord-010027-r0tl01kq 1244 2 : : : cord-010027-r0tl01kq 1245 1 Of of IN cord-010027-r0tl01kq 1245 2 the the DT cord-010027-r0tl01kq 1245 3 618 618 CD cord-010027-r0tl01kq 1245 4 invasive invasive JJ cord-010027-r0tl01kq 1245 5 breast breast NN cord-010027-r0tl01kq 1245 6 cancers cancer NNS cord-010027-r0tl01kq 1245 7 , , , cord-010027-r0tl01kq 1245 8 69 69 CD cord-010027-r0tl01kq 1245 9 cases case NNS cord-010027-r0tl01kq 1245 10 ( ( -LRB- cord-010027-r0tl01kq 1245 11 11 11 CD cord-010027-r0tl01kq 1245 12 % % NN cord-010027-r0tl01kq 1245 13 ) ) -RRB- cord-010027-r0tl01kq 1245 14 were be VBD cord-010027-r0tl01kq 1245 15 identified identify VBN cord-010027-r0tl01kq 1245 16 , , , cord-010027-r0tl01kq 1245 17 of of IN cord-010027-r0tl01kq 1245 18 which which WDT cord-010027-r0tl01kq 1245 19 88 88 CD cord-010027-r0tl01kq 1245 20 % % NN cord-010027-r0tl01kq 1245 21 were be VBD cord-010027-r0tl01kq 1245 22 TN TN NNP cord-010027-r0tl01kq 1245 23 and and CC cord-010027-r0tl01kq 1245 24 28 28 CD cord-010027-r0tl01kq 1245 25 % % NN cord-010027-r0tl01kq 1245 26 were be VBD cord-010027-r0tl01kq 1245 27 designated designate VBN cord-010027-r0tl01kq 1245 28 BBC BBC NNP cord-010027-r0tl01kq 1245 29 in in IN cord-010027-r0tl01kq 1245 30 the the DT cord-010027-r0tl01kq 1245 31 report report NN cord-010027-r0tl01kq 1245 32 . . . cord-010027-r0tl01kq 1246 1 16 16 CD cord-010027-r0tl01kq 1246 2 % % NN cord-010027-r0tl01kq 1246 3 were be VBD cord-010027-r0tl01kq 1246 4 both both DT cord-010027-r0tl01kq 1246 5 TN TN NNP cord-010027-r0tl01kq 1246 6 and and CC cord-010027-r0tl01kq 1246 7 BBC BBC NNP cord-010027-r0tl01kq 1246 8 . . . cord-010027-r0tl01kq 1247 1 Where where WRB cord-010027-r0tl01kq 1247 2 a a DT cord-010027-r0tl01kq 1247 3 diagnosis diagnosis NN cord-010027-r0tl01kq 1247 4 of of IN cord-010027-r0tl01kq 1247 5 BBC BBC NNP cord-010027-r0tl01kq 1247 6 was be VBD cord-010027-r0tl01kq 1247 7 made make VBN cord-010027-r0tl01kq 1247 8 , , , cord-010027-r0tl01kq 1247 9 37 37 CD cord-010027-r0tl01kq 1247 10 % % NN cord-010027-r0tl01kq 1247 11 of of IN cord-010027-r0tl01kq 1247 12 cases case NNS cord-010027-r0tl01kq 1247 13 had have VBD cord-010027-r0tl01kq 1247 14 additional additional JJ cord-010027-r0tl01kq 1247 15 markers marker NNS cord-010027-r0tl01kq 1247 16 requested request VBN cord-010027-r0tl01kq 1247 17 . . . cord-010027-r0tl01kq 1248 1 Preliminary preliminary JJ cord-010027-r0tl01kq 1248 2 results result NNS cord-010027-r0tl01kq 1248 3 showed show VBD cord-010027-r0tl01kq 1248 4 94 94 CD cord-010027-r0tl01kq 1248 5 % % NN cord-010027-r0tl01kq 1248 6 were be VBD cord-010027-r0tl01kq 1248 7 CK5 ck5 NN cord-010027-r0tl01kq 1248 8 + + CC cord-010027-r0tl01kq 1248 9 and and CC cord-010027-r0tl01kq 1248 10 CK14 CK14 NNP cord-010027-r0tl01kq 1248 11 + + CC cord-010027-r0tl01kq 1248 12 . . . cord-010027-r0tl01kq 1249 1 This this DT cord-010027-r0tl01kq 1249 2 is be VBZ cord-010027-r0tl01kq 1249 3 higher high JJR cord-010027-r0tl01kq 1249 4 than than IN cord-010027-r0tl01kq 1249 5 other other JJ cord-010027-r0tl01kq 1249 6 studies study NNS cord-010027-r0tl01kq 1249 7 , , , cord-010027-r0tl01kq 1249 8 implying imply VBG cord-010027-r0tl01kq 1249 9 specificity specificity NN cord-010027-r0tl01kq 1249 10 but but CC cord-010027-r0tl01kq 1249 11 not not RB cord-010027-r0tl01kq 1249 12 sensitivity sensitivity NN cord-010027-r0tl01kq 1249 13 in in IN cord-010027-r0tl01kq 1249 14 suspecting suspect VBG cord-010027-r0tl01kq 1249 15 BBC BBC NNP cord-010027-r0tl01kq 1249 16 amongst amongst IN cord-010027-r0tl01kq 1249 17 reporting report VBG cord-010027-r0tl01kq 1249 18 pathologists pathologist NNS cord-010027-r0tl01kq 1249 19 . . . cord-010027-r0tl01kq 1250 1 Discussion discussion NN cord-010027-r0tl01kq 1250 2 : : : cord-010027-r0tl01kq 1251 1 A a DT cord-010027-r0tl01kq 1251 2 limitation limitation NN cord-010027-r0tl01kq 1251 3 of of IN cord-010027-r0tl01kq 1251 4 this this DT cord-010027-r0tl01kq 1251 5 review review NN cord-010027-r0tl01kq 1251 6 is be VBZ cord-010027-r0tl01kq 1251 7 that that IN cord-010027-r0tl01kq 1251 8 it -PRON- PRP cord-010027-r0tl01kq 1251 9 can can MD cord-010027-r0tl01kq 1251 10 not not RB cord-010027-r0tl01kq 1251 11 identify identify VB cord-010027-r0tl01kq 1251 12 the the DT cord-010027-r0tl01kq 1251 13 rare rare JJ cord-010027-r0tl01kq 1251 14 non non NNP cord-010027-r0tl01kq 1251 15 - - NNP cord-010027-r0tl01kq 1251 16 TN TN NNP cord-010027-r0tl01kq 1251 17 BBC BBC NNP cord-010027-r0tl01kq 1251 18 not not RB cord-010027-r0tl01kq 1251 19 diagnosed diagnose VBN cord-010027-r0tl01kq 1251 20 as as IN cord-010027-r0tl01kq 1251 21 such such JJ cord-010027-r0tl01kq 1251 22 . . . cord-010027-r0tl01kq 1252 1 It -PRON- PRP cord-010027-r0tl01kq 1252 2 also also RB cord-010027-r0tl01kq 1252 3 represents represent VBZ cord-010027-r0tl01kq 1252 4 current current JJ cord-010027-r0tl01kq 1252 5 practise practise NN cord-010027-r0tl01kq 1252 6 in in IN cord-010027-r0tl01kq 1252 7 a a DT cord-010027-r0tl01kq 1252 8 single single JJ cord-010027-r0tl01kq 1252 9 institute institute NN cord-010027-r0tl01kq 1252 10 and and CC cord-010027-r0tl01kq 1252 11 may may MD cord-010027-r0tl01kq 1252 12 not not RB cord-010027-r0tl01kq 1252 13 reflect reflect VB cord-010027-r0tl01kq 1252 14 national national JJ cord-010027-r0tl01kq 1252 15 practise practise NN cord-010027-r0tl01kq 1252 16 . . . cord-010027-r0tl01kq 1253 1 We -PRON- PRP cord-010027-r0tl01kq 1253 2 identified identify VBD cord-010027-r0tl01kq 1253 3 patchy patchy JJ cord-010027-r0tl01kq 1253 4 use use NN cord-010027-r0tl01kq 1253 5 of of IN cord-010027-r0tl01kq 1253 6 the the DT cord-010027-r0tl01kq 1253 7 designation designation NN cord-010027-r0tl01kq 1253 8 BBC BBC NNP cord-010027-r0tl01kq 1253 9 , , , cord-010027-r0tl01kq 1253 10 with with IN cord-010027-r0tl01kq 1253 11 overall overall JJ cord-010027-r0tl01kq 1253 12 under under IN cord-010027-r0tl01kq 1253 13 - - HYPH cord-010027-r0tl01kq 1253 14 reporting reporting NN cord-010027-r0tl01kq 1253 15 of of IN cord-010027-r0tl01kq 1253 16 this this DT cord-010027-r0tl01kq 1253 17 subtype subtype NN cord-010027-r0tl01kq 1253 18 . . . cord-010027-r0tl01kq 1254 1 We -PRON- PRP cord-010027-r0tl01kq 1254 2 recommend recommend VBP cord-010027-r0tl01kq 1254 3 that that IN cord-010027-r0tl01kq 1254 4 if if IN cord-010027-r0tl01kq 1254 5 it -PRON- PRP cord-010027-r0tl01kq 1254 6 becomes become VBZ cord-010027-r0tl01kq 1254 7 necessary necessary JJ cord-010027-r0tl01kq 1254 8 to to TO cord-010027-r0tl01kq 1254 9 distinguish distinguish VB cord-010027-r0tl01kq 1254 10 BBC BBC NNP cord-010027-r0tl01kq 1254 11 lesions lesion NNS cord-010027-r0tl01kq 1254 12 , , , cord-010027-r0tl01kq 1254 13 additional additional JJ cord-010027-r0tl01kq 1254 14 markers marker NNS cord-010027-r0tl01kq 1254 15 studies study NNS cord-010027-r0tl01kq 1254 16 , , , cord-010027-r0tl01kq 1254 17 such such JJ cord-010027-r0tl01kq 1254 18 as as IN cord-010027-r0tl01kq 1254 19 CK5 ck5 NN cord-010027-r0tl01kq 1254 20 and and CC cord-010027-r0tl01kq 1254 21 14 14 CD cord-010027-r0tl01kq 1254 22 be be VB cord-010027-r0tl01kq 1254 23 consistently consistently RB cord-010027-r0tl01kq 1254 24 performed perform VBN cord-010027-r0tl01kq 1254 25 . . . cord-010027-r0tl01kq 1255 1 Purpose purpose NN cord-010027-r0tl01kq 1255 2 : : : cord-010027-r0tl01kq 1256 1 Neoadjuvant neoadjuvant JJ cord-010027-r0tl01kq 1256 2 chemotherapy chemotherapy NN cord-010027-r0tl01kq 1256 3 ( ( -LRB- cord-010027-r0tl01kq 1256 4 NACT NACT NNP cord-010027-r0tl01kq 1256 5 ) ) -RRB- cord-010027-r0tl01kq 1256 6 is be VBZ cord-010027-r0tl01kq 1256 7 increasingly increasingly RB cord-010027-r0tl01kq 1256 8 used use VBN cord-010027-r0tl01kq 1256 9 for for IN cord-010027-r0tl01kq 1256 10 the the DT cord-010027-r0tl01kq 1256 11 management management NN cord-010027-r0tl01kq 1256 12 of of IN cord-010027-r0tl01kq 1256 13 large large JJ cord-010027-r0tl01kq 1256 14 but but CC cord-010027-r0tl01kq 1256 15 operable operable JJ cord-010027-r0tl01kq 1256 16 , , , cord-010027-r0tl01kq 1256 17 inflammatory inflammatory JJ cord-010027-r0tl01kq 1256 18 , , , cord-010027-r0tl01kq 1256 19 and and CC cord-010027-r0tl01kq 1256 20 locally locally RB cord-010027-r0tl01kq 1256 21 advanced advanced JJ cord-010027-r0tl01kq 1256 22 breast breast NN cord-010027-r0tl01kq 1256 23 cancer cancer NN cord-010027-r0tl01kq 1256 24 ( ( -LRB- cord-010027-r0tl01kq 1256 25 LABC LABC NNP cord-010027-r0tl01kq 1256 26 ) ) -RRB- cord-010027-r0tl01kq 1256 27 . . . cord-010027-r0tl01kq 1257 1 Little little JJ cord-010027-r0tl01kq 1257 2 is be VBZ cord-010027-r0tl01kq 1257 3 known know VBN cord-010027-r0tl01kq 1257 4 about about IN cord-010027-r0tl01kq 1257 5 predictors predictor NNS cord-010027-r0tl01kq 1257 6 of of IN cord-010027-r0tl01kq 1257 7 response response NN cord-010027-r0tl01kq 1257 8 / / SYM cord-010027-r0tl01kq 1257 9 survival survival NN cord-010027-r0tl01kq 1257 10 following follow VBG cord-010027-r0tl01kq 1257 11 NACT NACT NNP cord-010027-r0tl01kq 1257 12 . . . cord-010027-r0tl01kq 1258 1 The the DT cord-010027-r0tl01kq 1258 2 topoisomerase topoisomerase NN cord-010027-r0tl01kq 1258 3 IIα iiα NN cord-010027-r0tl01kq 1258 4 ( ( -LRB- cord-010027-r0tl01kq 1258 5 TOP2A TOP2A NNP cord-010027-r0tl01kq 1258 6 ) ) -RRB- cord-010027-r0tl01kq 1258 7 gene gene NN cord-010027-r0tl01kq 1258 8 , , , cord-010027-r0tl01kq 1258 9 a a DT cord-010027-r0tl01kq 1258 10 key key JJ cord-010027-r0tl01kq 1258 11 regulator regulator NN cord-010027-r0tl01kq 1258 12 of of IN cord-010027-r0tl01kq 1258 13 DNA dna NN cord-010027-r0tl01kq 1258 14 repair repair NN cord-010027-r0tl01kq 1258 15 and and CC cord-010027-r0tl01kq 1258 16 modelling modelling NN cord-010027-r0tl01kq 1258 17 , , , cord-010027-r0tl01kq 1258 18 is be VBZ cord-010027-r0tl01kq 1258 19 thought think VBN cord-010027-r0tl01kq 1258 20 to to TO cord-010027-r0tl01kq 1258 21 be be VB cord-010027-r0tl01kq 1258 22 target target NN cord-010027-r0tl01kq 1258 23 for for IN cord-010027-r0tl01kq 1258 24 anthracyclin anthracyclin JJ cord-010027-r0tl01kq 1258 25 and and CC cord-010027-r0tl01kq 1258 26 other other JJ cord-010027-r0tl01kq 1258 27 chemotherapeutic chemotherapeutic JJ cord-010027-r0tl01kq 1258 28 agents agent NNS cord-010027-r0tl01kq 1258 29 . . . cord-010027-r0tl01kq 1259 1 The the DT cord-010027-r0tl01kq 1259 2 aim aim NN cord-010027-r0tl01kq 1259 3 of of IN cord-010027-r0tl01kq 1259 4 this this DT cord-010027-r0tl01kq 1259 5 study study NN cord-010027-r0tl01kq 1259 6 is be VBZ cord-010027-r0tl01kq 1259 7 to to TO cord-010027-r0tl01kq 1259 8 assess assess VB cord-010027-r0tl01kq 1259 9 the the DT cord-010027-r0tl01kq 1259 10 role role NN cord-010027-r0tl01kq 1259 11 of of IN cord-010027-r0tl01kq 1259 12 TOP2A top2a CD cord-010027-r0tl01kq 1259 13 as as IN cord-010027-r0tl01kq 1259 14 marker marker NN cord-010027-r0tl01kq 1259 15 for for IN cord-010027-r0tl01kq 1259 16 response response NN cord-010027-r0tl01kq 1259 17 / / SYM cord-010027-r0tl01kq 1259 18 resistance resistance NN cord-010027-r0tl01kq 1259 19 to to IN cord-010027-r0tl01kq 1259 20 NACT NACT NNP cord-010027-r0tl01kq 1259 21 and and CC cord-010027-r0tl01kq 1259 22 patient patient JJ cord-010027-r0tl01kq 1259 23 outcome outcome NN cord-010027-r0tl01kq 1259 24 . . . cord-010027-r0tl01kq 1260 1 Methods method NNS cord-010027-r0tl01kq 1260 2 : : : cord-010027-r0tl01kq 1260 3 Patients patient NNS cord-010027-r0tl01kq 1260 4 who who WP cord-010027-r0tl01kq 1260 5 underwent undergo VBD cord-010027-r0tl01kq 1260 6 NACT NACT NNP cord-010027-r0tl01kq 1260 7 , , , cord-010027-r0tl01kq 1260 8 predominantly predominantly RB cord-010027-r0tl01kq 1260 9 anthracyclin anthracyclin NNP cord-010027-r0tl01kq 1260 10 , , , cord-010027-r0tl01kq 1260 11 for for IN cord-010027-r0tl01kq 1260 12 primary primary JJ cord-010027-r0tl01kq 1260 13 and and CC cord-010027-r0tl01kq 1260 14 operable operable JJ cord-010027-r0tl01kq 1260 15 invasive invasive JJ cord-010027-r0tl01kq 1260 16 carcinoma carcinoma NN cord-010027-r0tl01kq 1260 17 or or CC cord-010027-r0tl01kq 1260 18 LABC LABC NNP cord-010027-r0tl01kq 1260 19 in in IN cord-010027-r0tl01kq 1260 20 the the DT cord-010027-r0tl01kq 1260 21 period period NN cord-010027-r0tl01kq 1260 22 between between IN cord-010027-r0tl01kq 1260 23 2005 2005 CD cord-010027-r0tl01kq 1260 24 to to IN cord-010027-r0tl01kq 1260 25 20013 20013 CD cord-010027-r0tl01kq 1260 26 at at IN cord-010027-r0tl01kq 1260 27 a a DT cord-010027-r0tl01kq 1260 28 single single JJ cord-010027-r0tl01kq 1260 29 large large JJ cord-010027-r0tl01kq 1260 30 tertiary tertiary JJ cord-010027-r0tl01kq 1260 31 referral referral JJ cord-010027-r0tl01kq 1260 32 breast breast NN cord-010027-r0tl01kq 1260 33 unit unit NN cord-010027-r0tl01kq 1260 34 were be VBD cord-010027-r0tl01kq 1260 35 identified identify VBN cord-010027-r0tl01kq 1260 36 . . . cord-010027-r0tl01kq 1261 1 Comprehensive comprehensive JJ cord-010027-r0tl01kq 1261 2 data datum NNS cord-010027-r0tl01kq 1261 3 on on IN cord-010027-r0tl01kq 1261 4 chemotherapy chemotherapy NN cord-010027-r0tl01kq 1261 5 regimen regimen NN cord-010027-r0tl01kq 1261 6 , , , cord-010027-r0tl01kq 1261 7 surgical surgical JJ cord-010027-r0tl01kq 1261 8 treatment treatment NN cord-010027-r0tl01kq 1261 9 , , , cord-010027-r0tl01kq 1261 10 pathological pathological JJ cord-010027-r0tl01kq 1261 11 response response NN cord-010027-r0tl01kq 1261 12 and and CC cord-010027-r0tl01kq 1261 13 survival survival NN cord-010027-r0tl01kq 1261 14 were be VBD cord-010027-r0tl01kq 1261 15 collected collect VBN cord-010027-r0tl01kq 1261 16 . . . cord-010027-r0tl01kq 1262 1 Pre pre JJ cord-010027-r0tl01kq 1262 2 - - JJ cord-010027-r0tl01kq 1262 3 treatment treatment JJ cord-010027-r0tl01kq 1262 4 tumour tumour NN cord-010027-r0tl01kq 1262 5 samples sample NNS cord-010027-r0tl01kq 1262 6 were be VBD cord-010027-r0tl01kq 1262 7 stained stain VBN cord-010027-r0tl01kq 1262 8 for for IN cord-010027-r0tl01kq 1262 9 standard standard JJ cord-010027-r0tl01kq 1262 10 predictive predictive JJ cord-010027-r0tl01kq 1262 11 and and CC cord-010027-r0tl01kq 1262 12 prognostic prognostic JJ cord-010027-r0tl01kq 1262 13 markers marker NNS cord-010027-r0tl01kq 1262 14 and and CC cord-010027-r0tl01kq 1262 15 TOP2A. top2a. NN cord-010027-r0tl01kq 1262 16 Results result NNS cord-010027-r0tl01kq 1262 17 were be VBD cord-010027-r0tl01kq 1262 18 correlated correlate VBN cord-010027-r0tl01kq 1262 19 with with IN cord-010027-r0tl01kq 1262 20 pathological pathological JJ cord-010027-r0tl01kq 1262 21 response response NN cord-010027-r0tl01kq 1262 22 ( ( -LRB- cord-010027-r0tl01kq 1262 23 PR pr NN cord-010027-r0tl01kq 1262 24 ) ) -RRB- cord-010027-r0tl01kq 1262 25 and and CC cord-010027-r0tl01kq 1262 26 patient patient JJ cord-010027-r0tl01kq 1262 27 survival survival NN cord-010027-r0tl01kq 1262 28 . . . cord-010027-r0tl01kq 1263 1 Results result NNS cord-010027-r0tl01kq 1263 2 : : : cord-010027-r0tl01kq 1264 1 252 252 CD cord-010027-r0tl01kq 1264 2 patients patient NNS cord-010027-r0tl01kq 1264 3 fulfilled fulfil VBD cord-010027-r0tl01kq 1264 4 inclusion inclusion NN cord-010027-r0tl01kq 1264 5 criteria criterion NNS cord-010027-r0tl01kq 1264 6 . . . cord-010027-r0tl01kq 1265 1 Mean mean JJ cord-010027-r0tl01kq 1265 2 age age NN cord-010027-r0tl01kq 1265 3 was be VBD cord-010027-r0tl01kq 1265 4 48.94ys 48.94ys CD cord-010027-r0tl01kq 1265 5 . . . cord-010027-r0tl01kq 1266 1 Complete complete JJ cord-010027-r0tl01kq 1266 2 PR PR NNP cord-010027-r0tl01kq 1266 3 was be VBD cord-010027-r0tl01kq 1266 4 achieved achieve VBN cord-010027-r0tl01kq 1266 5 in in IN cord-010027-r0tl01kq 1266 6 15.4 15.4 CD cord-010027-r0tl01kq 1266 7 % % NN cord-010027-r0tl01kq 1266 8 . . . cord-010027-r0tl01kq 1267 1 The the DT cord-010027-r0tl01kq 1267 2 mean mean JJ cord-010027-r0tl01kq 1267 3 expression expression NN cord-010027-r0tl01kq 1267 4 level level NN cord-010027-r0tl01kq 1267 5 of of IN cord-010027-r0tl01kq 1267 6 TOP2A top2a CD cord-010027-r0tl01kq 1267 7 in in IN cord-010027-r0tl01kq 1267 8 pre pre JJ cord-010027-r0tl01kq 1267 9 - - JJ cord-010027-r0tl01kq 1267 10 treatment treatment JJ cord-010027-r0tl01kq 1267 11 core core NN cord-010027-r0tl01kq 1267 12 biopsies biopsy NNS cord-010027-r0tl01kq 1267 13 was be VBD cord-010027-r0tl01kq 1267 14 75.4 75.4 CD cord-010027-r0tl01kq 1267 15 % % NN cord-010027-r0tl01kq 1267 16 , , , cord-010027-r0tl01kq 1267 17 range range VBP cord-010027-r0tl01kq 1267 18 0 0 CD cord-010027-r0tl01kq 1267 19 - - SYM cord-010027-r0tl01kq 1267 20 95 95 CD cord-010027-r0tl01kq 1267 21 % % NN cord-010027-r0tl01kq 1267 22 . . . cord-010027-r0tl01kq 1268 1 There there EX cord-010027-r0tl01kq 1268 2 was be VBD cord-010027-r0tl01kq 1268 3 significantly significantly RB cord-010027-r0tl01kq 1268 4 higher high JJR cord-010027-r0tl01kq 1268 5 expression expression NN cord-010027-r0tl01kq 1268 6 in in IN cord-010027-r0tl01kq 1268 7 high high JJ cord-010027-r0tl01kq 1268 8 grade grade NN cord-010027-r0tl01kq 1268 9 tumours tumour NNS cord-010027-r0tl01kq 1268 10 ( ( -LRB- cord-010027-r0tl01kq 1268 11 p=0.04 p=0.04 NN cord-010027-r0tl01kq 1268 12 ) ) -RRB- cord-010027-r0tl01kq 1268 13 and and CC cord-010027-r0tl01kq 1268 14 positive positive JJ cord-010027-r0tl01kq 1268 15 correlation correlation NN cord-010027-r0tl01kq 1268 16 with with IN cord-010027-r0tl01kq 1268 17 ki67 ki67 NNP cord-010027-r0tl01kq 1268 18 expression expression NN cord-010027-r0tl01kq 1268 19 ( ( -LRB- cord-010027-r0tl01kq 1268 20 r=0.405 r=0.405 ADD cord-010027-r0tl01kq 1268 21 , , , cord-010027-r0tl01kq 1268 22 p<0.001 p<0.001 CD cord-010027-r0tl01kq 1268 23 ) ) -RRB- cord-010027-r0tl01kq 1268 24 . . . cord-010027-r0tl01kq 1269 1 There there EX cord-010027-r0tl01kq 1269 2 was be VBD cord-010027-r0tl01kq 1269 3 no no DT cord-010027-r0tl01kq 1269 4 correlation correlation NN cord-010027-r0tl01kq 1269 5 with with IN cord-010027-r0tl01kq 1269 6 nodal nodal JJ cord-010027-r0tl01kq 1269 7 status status NN cord-010027-r0tl01kq 1269 8 , , , cord-010027-r0tl01kq 1269 9 PR PR NNP cord-010027-r0tl01kq 1269 10 or or CC cord-010027-r0tl01kq 1269 11 HER2 her2 JJ cord-010027-r0tl01kq 1269 12 expression expression NN cord-010027-r0tl01kq 1269 13 . . . cord-010027-r0tl01kq 1270 1 Cases case NNS cord-010027-r0tl01kq 1270 2 with with IN cord-010027-r0tl01kq 1270 3 high high JJ cord-010027-r0tl01kq 1270 4 expression expression NN cord-010027-r0tl01kq 1270 5 ( ( -LRB- cord-010027-r0tl01kq 1270 6 > > NFP cord-010027-r0tl01kq 1270 7 50 50 CD cord-010027-r0tl01kq 1270 8 % % NN cord-010027-r0tl01kq 1270 9 ) ) -RRB- cord-010027-r0tl01kq 1270 10 , , , cord-010027-r0tl01kq 1270 11 had have VBD cord-010027-r0tl01kq 1270 12 significantly significantly RB cord-010027-r0tl01kq 1270 13 worse bad JJR cord-010027-r0tl01kq 1270 14 overall overall JJ cord-010027-r0tl01kq 1270 15 survival survival NN cord-010027-r0tl01kq 1270 16 ( ( -LRB- cord-010027-r0tl01kq 1270 17 mean mean VB cord-010027-r0tl01kq 1270 18 38 38 CD cord-010027-r0tl01kq 1270 19 vs vs IN cord-010027-r0tl01kq 1270 20 52 52 CD cord-010027-r0tl01kq 1270 21 months month NNS cord-010027-r0tl01kq 1270 22 , , , cord-010027-r0tl01kq 1270 23 p=0.01 p=0.01 NNP cord-010027-r0tl01kq 1270 24 ) ) -RRB- cord-010027-r0tl01kq 1270 25 . . . cord-010027-r0tl01kq 1271 1 This this DT cord-010027-r0tl01kq 1271 2 was be VBD cord-010027-r0tl01kq 1271 3 also also RB cord-010027-r0tl01kq 1271 4 identified identify VBN cord-010027-r0tl01kq 1271 5 in in IN cord-010027-r0tl01kq 1271 6 the the DT cord-010027-r0tl01kq 1271 7 endocrine endocrine JJ cord-010027-r0tl01kq 1271 8 non non AFX cord-010027-r0tl01kq 1271 9 responsive responsive JJ cord-010027-r0tl01kq 1271 10 group group NN cord-010027-r0tl01kq 1271 11 ( ( -LRB- cord-010027-r0tl01kq 1271 12 ER ER NNP cord-010027-r0tl01kq 1271 13 Allred Allred NNP cord-010027-r0tl01kq 1271 14 score≤4 score≤4 NNP cord-010027-r0tl01kq 1271 15 ) ) -RRB- cord-010027-r0tl01kq 1271 16 , , , cord-010027-r0tl01kq 1271 17 mean mean VBP cord-010027-r0tl01kq 1271 18 74 74 CD cord-010027-r0tl01kq 1271 19 vs vs IN cord-010027-r0tl01kq 1271 20 33 33 CD cord-010027-r0tl01kq 1271 21 months month NNS cord-010027-r0tl01kq 1271 22 , , , cord-010027-r0tl01kq 1271 23 p=0.04 p=0.04 NNP cord-010027-r0tl01kq 1271 24 . . . cord-010027-r0tl01kq 1272 1 On on IN cord-010027-r0tl01kq 1272 2 multivariate multivariate JJ cord-010027-r0tl01kq 1272 3 analysis analysis NN cord-010027-r0tl01kq 1272 4 , , , cord-010027-r0tl01kq 1272 5 TOP2A TOP2A NNP cord-010027-r0tl01kq 1272 6 was be VBD cord-010027-r0tl01kq 1272 7 not not RB cord-010027-r0tl01kq 1272 8 an an DT cord-010027-r0tl01kq 1272 9 independent independent JJ cord-010027-r0tl01kq 1272 10 factor factor NN cord-010027-r0tl01kq 1272 11 for for IN cord-010027-r0tl01kq 1272 12 overall overall JJ cord-010027-r0tl01kq 1272 13 survival survival NN cord-010027-r0tl01kq 1272 14 . . . cord-010027-r0tl01kq 1273 1 Conclusions conclusion NNS cord-010027-r0tl01kq 1273 2 : : : cord-010027-r0tl01kq 1274 1 TOP2A top2a CD cord-010027-r0tl01kq 1275 1 protein protein NN cord-010027-r0tl01kq 1275 2 is be VBZ cord-010027-r0tl01kq 1275 3 expressed express VBN cord-010027-r0tl01kq 1275 4 in in IN cord-010027-r0tl01kq 1275 5 high high JJ cord-010027-r0tl01kq 1275 6 grade grade NN cord-010027-r0tl01kq 1275 7 breast breast NN cord-010027-r0tl01kq 1275 8 carcinoma carcinoma NN cord-010027-r0tl01kq 1275 9 with with IN cord-010027-r0tl01kq 1275 10 high high JJ cord-010027-r0tl01kq 1275 11 Ki67 Ki67 NNP cord-010027-r0tl01kq 1275 12 proliferation proliferation NN cord-010027-r0tl01kq 1275 13 index index NN cord-010027-r0tl01kq 1275 14 . . . cord-010027-r0tl01kq 1276 1 Its -PRON- PRP$ cord-010027-r0tl01kq 1276 2 expression expression NN cord-010027-r0tl01kq 1276 3 in in IN cord-010027-r0tl01kq 1276 4 pre pre JJ cord-010027-r0tl01kq 1276 5 - - JJ cord-010027-r0tl01kq 1276 6 treatment treatment JJ cord-010027-r0tl01kq 1276 7 biopsies biopsy NNS cord-010027-r0tl01kq 1276 8 predicted predict VBD cord-010027-r0tl01kq 1276 9 patient patient JJ cord-010027-r0tl01kq 1276 10 outcome outcome NN cord-010027-r0tl01kq 1276 11 in in IN cord-010027-r0tl01kq 1276 12 the the DT cord-010027-r0tl01kq 1276 13 neoadjuvant neoadjuvant JJ cord-010027-r0tl01kq 1276 14 setting setting NN cord-010027-r0tl01kq 1276 15 . . . cord-010027-r0tl01kq 1277 1 This this DT cord-010027-r0tl01kq 1277 2 strong strong JJ cord-010027-r0tl01kq 1277 3 adverse adverse JJ cord-010027-r0tl01kq 1277 4 effect effect NN cord-010027-r0tl01kq 1277 5 on on IN cord-010027-r0tl01kq 1277 6 survival survival NN cord-010027-r0tl01kq 1277 7 warrents warrent NNS cord-010027-r0tl01kq 1277 8 further further JJ cord-010027-r0tl01kq 1277 9 prospective prospective JJ cord-010027-r0tl01kq 1277 10 investigation investigation NN cord-010027-r0tl01kq 1277 11 as as IN cord-010027-r0tl01kq 1277 12 a a DT cord-010027-r0tl01kq 1277 13 marker marker NN cord-010027-r0tl01kq 1277 14 of of IN cord-010027-r0tl01kq 1277 15 outcome outcome NN cord-010027-r0tl01kq 1277 16 in in IN cord-010027-r0tl01kq 1277 17 NACT NACT NNP cord-010027-r0tl01kq 1277 18 patients patient NNS cord-010027-r0tl01kq 1277 19 . . . cord-010027-r0tl01kq 1278 1 The the DT cord-010027-r0tl01kq 1278 2 risk risk NN cord-010027-r0tl01kq 1278 3 of of IN cord-010027-r0tl01kq 1278 4 circumferential circumferential JJ cord-010027-r0tl01kq 1278 5 resection resection NN cord-010027-r0tl01kq 1278 6 margin margin NN cord-010027-r0tl01kq 1278 7 ( ( -LRB- cord-010027-r0tl01kq 1278 8 CRM CRM NNP cord-010027-r0tl01kq 1278 9 ) ) -RRB- cord-010027-r0tl01kq 1278 10 involvement involvement NN cord-010027-r0tl01kq 1278 11 is be VBZ cord-010027-r0tl01kq 1278 12 confined confine VBN cord-010027-r0tl01kq 1278 13 to to IN cord-010027-r0tl01kq 1278 14 tumours tumour NNS cord-010027-r0tl01kq 1278 15 of of IN cord-010027-r0tl01kq 1278 16 the the DT cord-010027-r0tl01kq 1278 17 rectum rectum NN cord-010027-r0tl01kq 1278 18 with with IN cord-010027-r0tl01kq 1278 19 the the DT cord-010027-r0tl01kq 1278 20 risk risk NN cord-010027-r0tl01kq 1278 21 of of IN cord-010027-r0tl01kq 1278 22 peritoneal peritoneal JJ cord-010027-r0tl01kq 1278 23 involvement involvement NN cord-010027-r0tl01kq 1278 24 increasing increase VBG cord-010027-r0tl01kq 1278 25 the the DT cord-010027-r0tl01kq 1278 26 further further JJ cord-010027-r0tl01kq 1278 27 a a DT cord-010027-r0tl01kq 1278 28 tumour tumour NN cord-010027-r0tl01kq 1278 29 is be VBZ cord-010027-r0tl01kq 1278 30 located locate VBN cord-010027-r0tl01kq 1278 31 above above IN cord-010027-r0tl01kq 1278 32 the the DT cord-010027-r0tl01kq 1278 33 peritoneal peritoneal JJ cord-010027-r0tl01kq 1278 34 reflection reflection NN cord-010027-r0tl01kq 1278 35 . . . cord-010027-r0tl01kq 1279 1 There there EX cord-010027-r0tl01kq 1279 2 is be VBZ cord-010027-r0tl01kq 1279 3 no no DT cord-010027-r0tl01kq 1279 4 internationally internationally RB cord-010027-r0tl01kq 1279 5 accepted accept VBN cord-010027-r0tl01kq 1279 6 definition definition NN cord-010027-r0tl01kq 1279 7 of of IN cord-010027-r0tl01kq 1279 8 the the DT cord-010027-r0tl01kq 1279 9 upper upper JJ cord-010027-r0tl01kq 1279 10 limit limit NN cord-010027-r0tl01kq 1279 11 of of IN cord-010027-r0tl01kq 1279 12 the the DT cord-010027-r0tl01kq 1279 13 rectum rectum NN cord-010027-r0tl01kq 1279 14 , , , cord-010027-r0tl01kq 1279 15 and and CC cord-010027-r0tl01kq 1279 16 the the DT cord-010027-r0tl01kq 1279 17 term term NN cord-010027-r0tl01kq 1279 18 ' ' `` cord-010027-r0tl01kq 1279 19 rectosigmoid rectosigmoid JJ cord-010027-r0tl01kq 1279 20 ' ' '' cord-010027-r0tl01kq 1279 21 is be VBZ cord-010027-r0tl01kq 1279 22 frequently frequently RB cord-010027-r0tl01kq 1279 23 applied apply VBN cord-010027-r0tl01kq 1279 24 to to IN cord-010027-r0tl01kq 1279 25 tumours tumour NNS cord-010027-r0tl01kq 1279 26 in in IN cord-010027-r0tl01kq 1279 27 this this DT cord-010027-r0tl01kq 1279 28 area area NN cord-010027-r0tl01kq 1279 29 leading lead VBG cord-010027-r0tl01kq 1279 30 to to IN cord-010027-r0tl01kq 1279 31 confusion confusion NN cord-010027-r0tl01kq 1279 32 around around IN cord-010027-r0tl01kq 1279 33 the the DT cord-010027-r0tl01kq 1279 34 risks risk NNS cord-010027-r0tl01kq 1279 35 and and CC cord-010027-r0tl01kq 1279 36 whether whether IN cord-010027-r0tl01kq 1279 37 radiotherapy radiotherapy NN cord-010027-r0tl01kq 1279 38 can can MD cord-010027-r0tl01kq 1279 39 be be VB cord-010027-r0tl01kq 1279 40 given give VBN cord-010027-r0tl01kq 1279 41 . . . cord-010027-r0tl01kq 1280 1 The the DT cord-010027-r0tl01kq 1280 2 photographs photograph NNS cord-010027-r0tl01kq 1280 3 from from IN cord-010027-r0tl01kq 1280 4 331 331 CD cord-010027-r0tl01kq 1280 5 abdominoperineal abdominoperineal NN cord-010027-r0tl01kq 1280 6 excision excision NN cord-010027-r0tl01kq 1280 7 specimens specimen NNS cord-010027-r0tl01kq 1280 8 were be VBD cord-010027-r0tl01kq 1280 9 available available JJ cord-010027-r0tl01kq 1280 10 for for IN cord-010027-r0tl01kq 1280 11 quantitation quantitation NN cord-010027-r0tl01kq 1280 12 using use VBG cord-010027-r0tl01kq 1280 13 Aperio Aperio NNP cord-010027-r0tl01kq 1280 14 ImageScope ImageScope NNP cord-010027-r0tl01kq 1280 15 . . . cord-010027-r0tl01kq 1281 1 Both both CC cord-010027-r0tl01kq 1281 2 fresh fresh JJ cord-010027-r0tl01kq 1281 3 and and CC cord-010027-r0tl01kq 1281 4 fixed fixed JJ cord-010027-r0tl01kq 1281 5 specimen specimen JJ cord-010027-r0tl01kq 1281 6 images image NNS cord-010027-r0tl01kq 1281 7 were be VBD cord-010027-r0tl01kq 1281 8 included include VBN cord-010027-r0tl01kq 1281 9 where where WRB cord-010027-r0tl01kq 1281 10 available available JJ cord-010027-r0tl01kq 1281 11 . . . cord-010027-r0tl01kq 1282 1 The the DT cord-010027-r0tl01kq 1282 2 position position NN cord-010027-r0tl01kq 1282 3 of of IN cord-010027-r0tl01kq 1282 4 the the DT cord-010027-r0tl01kq 1282 5 anal anal JJ cord-010027-r0tl01kq 1282 6 verge verge NN cord-010027-r0tl01kq 1282 7 , , , cord-010027-r0tl01kq 1282 8 top top NN cord-010027-r0tl01kq 1282 9 of of IN cord-010027-r0tl01kq 1282 10 the the DT cord-010027-r0tl01kq 1282 11 sphincters sphincter NNS cord-010027-r0tl01kq 1282 12 , , , cord-010027-r0tl01kq 1282 13 anterior anterior JJ cord-010027-r0tl01kq 1282 14 peritoneal peritoneal JJ cord-010027-r0tl01kq 1282 15 reflection reflection NN cord-010027-r0tl01kq 1282 16 , , , cord-010027-r0tl01kq 1282 17 mesorectal mesorectal JJ cord-010027-r0tl01kq 1282 18 apex apex NNP cord-010027-r0tl01kq 1282 19 ( ( -LRB- cord-010027-r0tl01kq 1282 20 defining define VBG cord-010027-r0tl01kq 1282 21 the the DT cord-010027-r0tl01kq 1282 22 limit limit NN cord-010027-r0tl01kq 1282 23 of of IN cord-010027-r0tl01kq 1282 24 the the DT cord-010027-r0tl01kq 1282 25 mesorectum mesorectum NN cord-010027-r0tl01kq 1282 26 ) ) -RRB- cord-010027-r0tl01kq 1282 27 and and CC cord-010027-r0tl01kq 1282 28 high high JJ cord-010027-r0tl01kq 1282 29 vascular vascular JJ cord-010027-r0tl01kq 1282 30 tie tie NN cord-010027-r0tl01kq 1282 31 were be VBD cord-010027-r0tl01kq 1282 32 identified identify VBN cord-010027-r0tl01kq 1282 33 and and CC cord-010027-r0tl01kq 1282 34 the the DT cord-010027-r0tl01kq 1282 35 distances distance NNS cord-010027-r0tl01kq 1282 36 between between IN cord-010027-r0tl01kq 1282 37 each each DT cord-010027-r0tl01kq 1282 38 point point NN cord-010027-r0tl01kq 1282 39 measured measure VBN cord-010027-r0tl01kq 1282 40 . . . cord-010027-r0tl01kq 1283 1 The the DT cord-010027-r0tl01kq 1283 2 work work NN cord-010027-r0tl01kq 1283 3 was be VBD cord-010027-r0tl01kq 1283 4 supported support VBN cord-010027-r0tl01kq 1283 5 by by IN cord-010027-r0tl01kq 1283 6 a a DT cord-010027-r0tl01kq 1283 7 PathSoc PathSoc NNP cord-010027-r0tl01kq 1283 8 bursary bursary NN cord-010027-r0tl01kq 1283 9 . . . cord-010027-r0tl01kq 1284 1 There there EX cord-010027-r0tl01kq 1284 2 was be VBD cord-010027-r0tl01kq 1284 3 wide wide JJ cord-010027-r0tl01kq 1284 4 variation variation NN cord-010027-r0tl01kq 1284 5 in in IN cord-010027-r0tl01kq 1284 6 the the DT cord-010027-r0tl01kq 1284 7 length length NN cord-010027-r0tl01kq 1284 8 of of IN cord-010027-r0tl01kq 1284 9 the the DT cord-010027-r0tl01kq 1284 10 mesorectum mesorectum NN cord-010027-r0tl01kq 1284 11 in in IN cord-010027-r0tl01kq 1284 12 both both CC cord-010027-r0tl01kq 1284 13 fresh fresh JJ cord-010027-r0tl01kq 1284 14 ( ( -LRB- cord-010027-r0tl01kq 1284 15 median median NN cord-010027-r0tl01kq 1284 16 172 172 CD cord-010027-r0tl01kq 1284 17 mm mm NN cord-010027-r0tl01kq 1284 18 , , , cord-010027-r0tl01kq 1284 19 IQR IQR NNP cord-010027-r0tl01kq 1284 20 146 146 CD cord-010027-r0tl01kq 1284 21 to to IN cord-010027-r0tl01kq 1284 22 199 199 CD cord-010027-r0tl01kq 1284 23 mm mm NNS cord-010027-r0tl01kq 1284 24 ) ) -RRB- cord-010027-r0tl01kq 1284 25 and and CC cord-010027-r0tl01kq 1284 26 fixed fix VBN cord-010027-r0tl01kq 1284 27 ( ( -LRB- cord-010027-r0tl01kq 1284 28 166 166 CD cord-010027-r0tl01kq 1284 29 mm mm NNS cord-010027-r0tl01kq 1284 30 , , , cord-010027-r0tl01kq 1284 31 140 140 CD cord-010027-r0tl01kq 1284 32 to to TO cord-010027-r0tl01kq 1284 33 196 196 CD cord-010027-r0tl01kq 1284 34 mm mm NNS cord-010027-r0tl01kq 1284 35 ) ) -RRB- cord-010027-r0tl01kq 1284 36 specimens specimen NNS cord-010027-r0tl01kq 1284 37 . . . cord-010027-r0tl01kq 1285 1 The the DT cord-010027-r0tl01kq 1285 2 length length NN cord-010027-r0tl01kq 1285 3 of of IN cord-010027-r0tl01kq 1285 4 the the DT cord-010027-r0tl01kq 1285 5 anal anal JJ cord-010027-r0tl01kq 1285 6 canal canal NNP cord-010027-r0tl01kq 1285 7 also also RB cord-010027-r0tl01kq 1285 8 showed show VBD cord-010027-r0tl01kq 1285 9 variation variation NN cord-010027-r0tl01kq 1285 10 ( ( -LRB- cord-010027-r0tl01kq 1285 11 fresh fresh JJ cord-010027-r0tl01kq 1285 12 66 66 CD cord-010027-r0tl01kq 1285 13 mm mm NN cord-010027-r0tl01kq 1285 14 , , , cord-010027-r0tl01kq 1285 15 49 49 CD cord-010027-r0tl01kq 1285 16 to to TO cord-010027-r0tl01kq 1285 17 78 78 CD cord-010027-r0tl01kq 1285 18 mm mm NNS cord-010027-r0tl01kq 1285 19 ; ; , cord-010027-r0tl01kq 1285 20 fixed fix VBN cord-010027-r0tl01kq 1285 21 66 66 CD cord-010027-r0tl01kq 1285 22 mm mm NNS cord-010027-r0tl01kq 1285 23 , , , cord-010027-r0tl01kq 1285 24 53 53 CD cord-010027-r0tl01kq 1285 25 to to TO cord-010027-r0tl01kq 1285 26 75 75 CD cord-010027-r0tl01kq 1285 27 mm mm NNS cord-010027-r0tl01kq 1285 28 ) ) -RRB- cord-010027-r0tl01kq 1285 29 . . . cord-010027-r0tl01kq 1286 1 The the DT cord-010027-r0tl01kq 1286 2 height height NN cord-010027-r0tl01kq 1286 3 of of IN cord-010027-r0tl01kq 1286 4 the the DT cord-010027-r0tl01kq 1286 5 anterior anterior NNP cord-010027-r0tl01kq 1286 6 peritoneal peritoneal JJ cord-010027-r0tl01kq 1286 7 reflection reflection NN cord-010027-r0tl01kq 1286 8 was be VBD cord-010027-r0tl01kq 1286 9 lower low JJR cord-010027-r0tl01kq 1286 10 in in IN cord-010027-r0tl01kq 1286 11 females female NNS cord-010027-r0tl01kq 1286 12 compared compare VBN cord-010027-r0tl01kq 1286 13 to to IN cord-010027-r0tl01kq 1286 14 males male NNS cord-010027-r0tl01kq 1286 15 ( ( -LRB- cord-010027-r0tl01kq 1286 16 fresh fresh JJ cord-010027-r0tl01kq 1286 17 125 125 CD cord-010027-r0tl01kq 1286 18 vs. vs. NN cord-010027-r0tl01kq 1286 19 132 132 CD cord-010027-r0tl01kq 1286 20 mm mm NNS cord-010027-r0tl01kq 1286 21 , , , cord-010027-r0tl01kq 1286 22 p=0.288 p=0.288 NNP cord-010027-r0tl01kq 1287 1 ; ; : cord-010027-r0tl01kq 1287 2 fixed fix VBN cord-010027-r0tl01kq 1287 3 111 111 CD cord-010027-r0tl01kq 1287 4 vs. vs. NN cord-010027-r0tl01kq 1287 5 126 126 CD cord-010027-r0tl01kq 1287 6 mm mm NNS cord-010027-r0tl01kq 1287 7 , , , cord-010027-r0tl01kq 1287 8 p=0.034 p=0.034 NNP cord-010027-r0tl01kq 1287 9 ) ) -RRB- cord-010027-r0tl01kq 1287 10 . . . cord-010027-r0tl01kq 1288 1 There there EX cord-010027-r0tl01kq 1288 2 is be VBZ cord-010027-r0tl01kq 1288 3 marked mark VBN cord-010027-r0tl01kq 1288 4 variability variability NN cord-010027-r0tl01kq 1288 5 in in IN cord-010027-r0tl01kq 1288 6 the the DT cord-010027-r0tl01kq 1288 7 anatomy anatomy NN cord-010027-r0tl01kq 1288 8 of of IN cord-010027-r0tl01kq 1288 9 the the DT cord-010027-r0tl01kq 1288 10 rectum rectum NN cord-010027-r0tl01kq 1288 11 between between IN cord-010027-r0tl01kq 1288 12 individuals individual NNS cord-010027-r0tl01kq 1288 13 and and CC cord-010027-r0tl01kq 1288 14 genders gender NNS cord-010027-r0tl01kq 1288 15 . . . cord-010027-r0tl01kq 1289 1 This this DT cord-010027-r0tl01kq 1289 2 potentially potentially RB cord-010027-r0tl01kq 1289 3 affects affect VBZ cord-010027-r0tl01kq 1289 4 the the DT cord-010027-r0tl01kq 1289 5 risk risk NN cord-010027-r0tl01kq 1289 6 of of IN cord-010027-r0tl01kq 1289 7 either either DT cord-010027-r0tl01kq 1289 8 CRM CRM NNP cord-010027-r0tl01kq 1289 9 or or CC cord-010027-r0tl01kq 1289 10 peritoneal peritoneal JJ cord-010027-r0tl01kq 1289 11 involvement involvement NN cord-010027-r0tl01kq 1289 12 and and CC cord-010027-r0tl01kq 1289 13 whether whether IN cord-010027-r0tl01kq 1289 14 radiotherapy radiotherapy NN cord-010027-r0tl01kq 1289 15 could could MD cord-010027-r0tl01kq 1289 16 be be VB cord-010027-r0tl01kq 1289 17 offered offer VBN cord-010027-r0tl01kq 1289 18 . . . cord-010027-r0tl01kq 1290 1 A a DT cord-010027-r0tl01kq 1290 2 fixed fix VBN cord-010027-r0tl01kq 1290 3 definition definition NN cord-010027-r0tl01kq 1290 4 of of IN cord-010027-r0tl01kq 1290 5 the the DT cord-010027-r0tl01kq 1290 6 upper upper JJ cord-010027-r0tl01kq 1290 7 limit limit NN cord-010027-r0tl01kq 1290 8 of of IN cord-010027-r0tl01kq 1290 9 the the DT cord-010027-r0tl01kq 1290 10 rectum rectum NN cord-010027-r0tl01kq 1290 11 for for IN cord-010027-r0tl01kq 1290 12 all all DT cord-010027-r0tl01kq 1290 13 patients patient NNS cord-010027-r0tl01kq 1290 14 is be VBZ cord-010027-r0tl01kq 1290 15 not not RB cord-010027-r0tl01kq 1290 16 helpful helpful JJ cord-010027-r0tl01kq 1290 17 . . . cord-010027-r0tl01kq 1291 1 This this DT cord-010027-r0tl01kq 1291 2 should should MD cord-010027-r0tl01kq 1291 3 be be VB cord-010027-r0tl01kq 1291 4 determined determine VBN cord-010027-r0tl01kq 1291 5 for for IN cord-010027-r0tl01kq 1291 6 individual individual JJ cord-010027-r0tl01kq 1291 7 patients patient NNS cord-010027-r0tl01kq 1291 8 on on IN cord-010027-r0tl01kq 1291 9 the the DT cord-010027-r0tl01kq 1291 10 basis basis NN cord-010027-r0tl01kq 1291 11 of of IN cord-010027-r0tl01kq 1291 12 the the DT cord-010027-r0tl01kq 1291 13 MRI MRI NNP cord-010027-r0tl01kq 1291 14 findings finding NNS cord-010027-r0tl01kq 1291 15 . . . cord-010027-r0tl01kq 1292 1 The the DT cord-010027-r0tl01kq 1292 2 term term NN cord-010027-r0tl01kq 1292 3 ' ' `` cord-010027-r0tl01kq 1292 4 rectosigmoid rectosigmoid JJ cord-010027-r0tl01kq 1292 5 ' ' '' cord-010027-r0tl01kq 1292 6 should should MD cord-010027-r0tl01kq 1292 7 be be VB cord-010027-r0tl01kq 1292 8 abolished abolish VBN cord-010027-r0tl01kq 1292 9 and and CC cord-010027-r0tl01kq 1292 10 more more RBR cord-010027-r0tl01kq 1292 11 accurate accurate JJ cord-010027-r0tl01kq 1292 12 definitions definition NNS cord-010027-r0tl01kq 1292 13 based base VBN cord-010027-r0tl01kq 1292 14 on on IN cord-010027-r0tl01kq 1292 15 the the DT cord-010027-r0tl01kq 1292 16 position position NN cord-010027-r0tl01kq 1292 17 of of IN cord-010027-r0tl01kq 1292 18 the the DT cord-010027-r0tl01kq 1292 19 mesorectal mesorectal JJ cord-010027-r0tl01kq 1292 20 apex apex NN cord-010027-r0tl01kq 1292 21 and and CC cord-010027-r0tl01kq 1292 22 commencement commencement NN cord-010027-r0tl01kq 1292 23 of of IN cord-010027-r0tl01kq 1292 24 the the DT cord-010027-r0tl01kq 1292 25 sigmoid sigmoid JJ cord-010027-r0tl01kq 1292 26 mesentery mesentery NN cord-010027-r0tl01kq 1292 27 should should MD cord-010027-r0tl01kq 1292 28 be be VB cord-010027-r0tl01kq 1292 29 used use VBN cord-010027-r0tl01kq 1292 30 to to TO cord-010027-r0tl01kq 1292 31 define define VB cord-010027-r0tl01kq 1292 32 the the DT cord-010027-r0tl01kq 1292 33 boundaries boundary NNS cord-010027-r0tl01kq 1292 34 of of IN cord-010027-r0tl01kq 1292 35 the the DT cord-010027-r0tl01kq 1292 36 rectum rectum NN cord-010027-r0tl01kq 1292 37 and and CC cord-010027-r0tl01kq 1292 38 sigmoid sigmoid JJ cord-010027-r0tl01kq 1292 39 colon colon NN cord-010027-r0tl01kq 1292 40 and and CC cord-010027-r0tl01kq 1292 41 determine determine VB cord-010027-r0tl01kq 1292 42 subsequent subsequent JJ cord-010027-r0tl01kq 1292 43 risks risk NNS cord-010027-r0tl01kq 1292 44 to to IN cord-010027-r0tl01kq 1292 45 the the DT cord-010027-r0tl01kq 1292 46 patient patient NN cord-010027-r0tl01kq 1292 47 . . . cord-010027-r0tl01kq 1293 1 Pre pre JJ cord-010027-r0tl01kq 1293 2 - - JJ cord-010027-r0tl01kq 1293 3 operative operative JJ cord-010027-r0tl01kq 1293 4 chemoradiotherapy chemoradiotherapy NN cord-010027-r0tl01kq 1293 5 ( ( -LRB- cord-010027-r0tl01kq 1293 6 CRT CRT NNP cord-010027-r0tl01kq 1293 7 ) ) -RRB- cord-010027-r0tl01kq 1293 8 with with IN cord-010027-r0tl01kq 1293 9 anti anti JJ cord-010027-r0tl01kq 1293 10 - - JJ cord-010027-r0tl01kq 1293 11 EGFR egfr JJ cord-010027-r0tl01kq 1293 12 antibodies antibody NNS cord-010027-r0tl01kq 1293 13 may may MD cord-010027-r0tl01kq 1293 14 change change VB cord-010027-r0tl01kq 1293 15 the the DT cord-010027-r0tl01kq 1293 16 status status NN cord-010027-r0tl01kq 1293 17 of of IN cord-010027-r0tl01kq 1293 18 EGFR EGFR NNP cord-010027-r0tl01kq 1293 19 pathway pathway NN cord-010027-r0tl01kq 1293 20 mutations mutation NNS cord-010027-r0tl01kq 1293 21 . . . cord-010027-r0tl01kq 1294 1 We -PRON- PRP cord-010027-r0tl01kq 1294 2 assessed assess VBD cord-010027-r0tl01kq 1294 3 the the DT cord-010027-r0tl01kq 1294 4 mutational mutational JJ cord-010027-r0tl01kq 1294 5 status status NN cord-010027-r0tl01kq 1294 6 of of IN cord-010027-r0tl01kq 1294 7 a a DT cord-010027-r0tl01kq 1294 8 number number NN cord-010027-r0tl01kq 1294 9 of of IN cord-010027-r0tl01kq 1294 10 EGFR EGFR NNP cord-010027-r0tl01kq 1294 11 pathway pathway NN cord-010027-r0tl01kq 1294 12 genes gene NNS cord-010027-r0tl01kq 1294 13 before before IN cord-010027-r0tl01kq 1294 14 and and CC cord-010027-r0tl01kq 1294 15 after after IN cord-010027-r0tl01kq 1294 16 CRT CRT NNP cord-010027-r0tl01kq 1294 17 in in IN cord-010027-r0tl01kq 1294 18 the the DT cord-010027-r0tl01kq 1294 19 NWCOG NWCOG NNP cord-010027-r0tl01kq 1294 20 EXCITE EXCITE NNP cord-010027-r0tl01kq 1294 21 trial trial NN cord-010027-r0tl01kq 1294 22 . . . cord-010027-r0tl01kq 1295 1 Patients patient NNS cord-010027-r0tl01kq 1295 2 with with IN cord-010027-r0tl01kq 1295 3 MRI MRI NNP cord-010027-r0tl01kq 1295 4 - - HYPH cord-010027-r0tl01kq 1295 5 threatened threaten VBN cord-010027-r0tl01kq 1295 6 surgical surgical JJ cord-010027-r0tl01kq 1295 7 margins margin NNS cord-010027-r0tl01kq 1295 8 were be VBD cord-010027-r0tl01kq 1295 9 given give VBN cord-010027-r0tl01kq 1295 10 pelvic pelvic JJ cord-010027-r0tl01kq 1295 11 radiotherapy radiotherapy NN cord-010027-r0tl01kq 1295 12 ( ( -LRB- cord-010027-r0tl01kq 1295 13 45Gy 45gy CD cord-010027-r0tl01kq 1295 14 ) ) -RRB- cord-010027-r0tl01kq 1295 15 with with IN cord-010027-r0tl01kq 1295 16 capecitabine capecitabine NNP cord-010027-r0tl01kq 1295 17 , , , cord-010027-r0tl01kq 1295 18 irinotecan irinotecan NNP cord-010027-r0tl01kq 1295 19 and and CC cord-010027-r0tl01kq 1295 20 cetuximab cetuximab NNP cord-010027-r0tl01kq 1295 21 followed follow VBN cord-010027-r0tl01kq 1295 22 by by IN cord-010027-r0tl01kq 1295 23 surgery surgery NN cord-010027-r0tl01kq 1295 24 after after IN cord-010027-r0tl01kq 1295 25 8 8 CD cord-010027-r0tl01kq 1295 26 weeks week NNS cord-010027-r0tl01kq 1295 27 . . . cord-010027-r0tl01kq 1296 1 DNA DNA NNP cord-010027-r0tl01kq 1296 2 was be VBD cord-010027-r0tl01kq 1296 3 retrospectively retrospectively RB cord-010027-r0tl01kq 1296 4 extracted extract VBN cord-010027-r0tl01kq 1296 5 from from IN cord-010027-r0tl01kq 1296 6 the the DT cord-010027-r0tl01kq 1296 7 pre pre JJ cord-010027-r0tl01kq 1296 8 - - JJ cord-010027-r0tl01kq 1296 9 treatment treatment JJ cord-010027-r0tl01kq 1296 10 biopsy biopsy NN cord-010027-r0tl01kq 1296 11 and and CC cord-010027-r0tl01kq 1296 12 resection resection NN cord-010027-r0tl01kq 1296 13 specimen specimen NN cord-010027-r0tl01kq 1296 14 by by IN cord-010027-r0tl01kq 1296 15 macrodissecting macrodissecte VBG cord-010027-r0tl01kq 1296 16 areas area NNS cord-010027-r0tl01kq 1296 17 of of IN cord-010027-r0tl01kq 1296 18 greatest great JJS cord-010027-r0tl01kq 1296 19 residual residual JJ cord-010027-r0tl01kq 1296 20 tumour tumour NN cord-010027-r0tl01kq 1296 21 . . . cord-010027-r0tl01kq 1297 1 The the DT cord-010027-r0tl01kq 1297 2 mutational mutational JJ cord-010027-r0tl01kq 1297 3 status status NN cord-010027-r0tl01kq 1297 4 of of IN cord-010027-r0tl01kq 1297 5 KRAS KRAS NNP cord-010027-r0tl01kq 1297 6 ( ( -LRB- cord-010027-r0tl01kq 1297 7 codons codon NNS cord-010027-r0tl01kq 1297 8 12/13/61/146 12/13/61/146 CD cord-010027-r0tl01kq 1297 9 ) ) -RRB- cord-010027-r0tl01kq 1297 10 , , , cord-010027-r0tl01kq 1297 11 NRAS NRAS NNP cord-010027-r0tl01kq 1297 12 ( ( -LRB- cord-010027-r0tl01kq 1297 13 12/13/61 12/13/61 CD cord-010027-r0tl01kq 1297 14 ) ) -RRB- cord-010027-r0tl01kq 1297 15 , , , cord-010027-r0tl01kq 1297 16 PIK3CA pik3ca NN cord-010027-r0tl01kq 1297 17 ( ( -LRB- cord-010027-r0tl01kq 1297 18 542/545/546/1047 542/545/546/1047 CD cord-010027-r0tl01kq 1297 19 ) ) -RRB- cord-010027-r0tl01kq 1297 20 and and CC cord-010027-r0tl01kq 1297 21 BRAF BRAF NNP cord-010027-r0tl01kq 1297 22 ( ( -LRB- cord-010027-r0tl01kq 1297 23 V600E v600e NN cord-010027-r0tl01kq 1297 24 hotspot hotspot NN cord-010027-r0tl01kq 1297 25 ) ) -RRB- cord-010027-r0tl01kq 1297 26 were be VBD cord-010027-r0tl01kq 1297 27 determined determine VBN cord-010027-r0tl01kq 1297 28 by by IN cord-010027-r0tl01kq 1297 29 pyrosequencing pyrosequence VBG cord-010027-r0tl01kq 1297 30 . . . cord-010027-r0tl01kq 1298 1 The the DT cord-010027-r0tl01kq 1298 2 work work NN cord-010027-r0tl01kq 1298 3 is be VBZ cord-010027-r0tl01kq 1298 4 presented present VBN cord-010027-r0tl01kq 1298 5 on on IN cord-010027-r0tl01kq 1298 6 behalf behalf NN cord-010027-r0tl01kq 1298 7 of of IN cord-010027-r0tl01kq 1298 8 the the DT cord-010027-r0tl01kq 1298 9 NWCOG NWCOG NNP cord-010027-r0tl01kq 1298 10 EXCITE excite VBP cord-010027-r0tl01kq 1298 11 trial trial NN cord-010027-r0tl01kq 1298 12 investigators investigator NNS cord-010027-r0tl01kq 1298 13 and and CC cord-010027-r0tl01kq 1298 14 was be VBD cord-010027-r0tl01kq 1298 15 part part NN cord-010027-r0tl01kq 1298 16 - - HYPH cord-010027-r0tl01kq 1298 17 funded fund VBN cord-010027-r0tl01kq 1298 18 by by IN cord-010027-r0tl01kq 1298 19 a a DT cord-010027-r0tl01kq 1298 20 PathSoc PathSoc NNP cord-010027-r0tl01kq 1298 21 fellowship fellowship NN cord-010027-r0tl01kq 1298 22 . . . cord-010027-r0tl01kq 1299 1 80 80 CD cord-010027-r0tl01kq 1299 2 patients patient NNS cord-010027-r0tl01kq 1299 3 commenced commence VBD cord-010027-r0tl01kq 1299 4 treatment treatment NN cord-010027-r0tl01kq 1299 5 and and CC cord-010027-r0tl01kq 1299 6 76 76 CD cord-010027-r0tl01kq 1299 7 underwent undergo VBD cord-010027-r0tl01kq 1299 8 surgery surgery NN cord-010027-r0tl01kq 1299 9 with with IN cord-010027-r0tl01kq 1299 10 pathological pathological JJ cord-010027-r0tl01kq 1299 11 complete complete JJ cord-010027-r0tl01kq 1299 12 response response NN cord-010027-r0tl01kq 1299 13 in in IN cord-010027-r0tl01kq 1299 14 14 14 CD cord-010027-r0tl01kq 1299 15 ( ( -LRB- cord-010027-r0tl01kq 1299 16 18 18 CD cord-010027-r0tl01kq 1299 17 % % NN cord-010027-r0tl01kq 1299 18 ) ) -RRB- cord-010027-r0tl01kq 1299 19 and and CC cord-010027-r0tl01kq 1299 20 near near RB cord-010027-r0tl01kq 1299 21 - - HYPH cord-010027-r0tl01kq 1299 22 complete complete JJ cord-010027-r0tl01kq 1299 23 in in IN cord-010027-r0tl01kq 1299 24 6 6 CD cord-010027-r0tl01kq 1299 25 ( ( -LRB- cord-010027-r0tl01kq 1299 26 8 8 CD cord-010027-r0tl01kq 1299 27 % % NN cord-010027-r0tl01kq 1299 28 ) ) -RRB- cord-010027-r0tl01kq 1299 29 . . . cord-010027-r0tl01kq 1300 1 Pre pre JJ cord-010027-r0tl01kq 1300 2 - - JJ cord-010027-r0tl01kq 1300 3 treatment treatment JJ cord-010027-r0tl01kq 1300 4 testing testing NN cord-010027-r0tl01kq 1300 5 ( ( -LRB- cord-010027-r0tl01kq 1300 6 n=78 n=78 NN cord-010027-r0tl01kq 1300 7 ) ) -RRB- cord-010027-r0tl01kq 1300 8 detected detect VBN cord-010027-r0tl01kq 1300 9 mutations mutation NNS cord-010027-r0tl01kq 1300 10 in in IN cord-010027-r0tl01kq 1300 11 KRAS KRAS NNP cord-010027-r0tl01kq 1300 12 ( ( -LRB- cord-010027-r0tl01kq 1300 13 n=34 n=34 NNP cord-010027-r0tl01kq 1300 14 ) ) -RRB- cord-010027-r0tl01kq 1300 15 , , , cord-010027-r0tl01kq 1300 16 BRAF BRAF NNP cord-010027-r0tl01kq 1300 17 ( ( -LRB- cord-010027-r0tl01kq 1300 18 n=3 n=3 NN cord-010027-r0tl01kq 1300 19 ) ) -RRB- cord-010027-r0tl01kq 1300 20 , , , cord-010027-r0tl01kq 1300 21 NRAS NRAS NNP cord-010027-r0tl01kq 1300 22 ( ( -LRB- cord-010027-r0tl01kq 1300 23 n=3 n=3 NN cord-010027-r0tl01kq 1300 24 ) ) -RRB- cord-010027-r0tl01kq 1300 25 and and CC cord-010027-r0tl01kq 1300 26 PIK3CA PIK3CA NNP cord-010027-r0tl01kq 1300 27 ( ( -LRB- cord-010027-r0tl01kq 1300 28 n=10 n=10 NNP cord-010027-r0tl01kq 1300 29 ) ) -RRB- cord-010027-r0tl01kq 1300 30 . . . cord-010027-r0tl01kq 1301 1 Any any DT cord-010027-r0tl01kq 1301 2 EGFR EGFR NNP cord-010027-r0tl01kq 1301 3 pathway pathway NN cord-010027-r0tl01kq 1301 4 mutation mutation NN cord-010027-r0tl01kq 1301 5 was be VBD cord-010027-r0tl01kq 1301 6 detected detect VBN cord-010027-r0tl01kq 1301 7 in in IN cord-010027-r0tl01kq 1301 8 58 58 CD cord-010027-r0tl01kq 1301 9 % % NN cord-010027-r0tl01kq 1301 10 . . . cord-010027-r0tl01kq 1302 1 Following follow VBG cord-010027-r0tl01kq 1302 2 CRT CRT NNP cord-010027-r0tl01kq 1302 3 , , , cord-010027-r0tl01kq 1302 4 cases case NNS cord-010027-r0tl01kq 1302 5 with with IN cord-010027-r0tl01kq 1302 6 residual residual JJ cord-010027-r0tl01kq 1302 7 tumour tumour NN cord-010027-r0tl01kq 1302 8 able able JJ cord-010027-r0tl01kq 1302 9 to to TO cord-010027-r0tl01kq 1302 10 be be VB cord-010027-r0tl01kq 1302 11 tested test VBN cord-010027-r0tl01kq 1302 12 ( ( -LRB- cord-010027-r0tl01kq 1302 13 n=54 n=54 JJ cord-010027-r0tl01kq 1302 14 ) ) -RRB- cord-010027-r0tl01kq 1302 15 showed show VBD cord-010027-r0tl01kq 1302 16 mutations mutation NNS cord-010027-r0tl01kq 1302 17 in in IN cord-010027-r0tl01kq 1302 18 32 32 CD cord-010027-r0tl01kq 1302 19 patients patient NNS cord-010027-r0tl01kq 1302 20 ( ( -LRB- cord-010027-r0tl01kq 1302 21 59 59 CD cord-010027-r0tl01kq 1302 22 % % NN cord-010027-r0tl01kq 1302 23 ) ) -RRB- cord-010027-r0tl01kq 1302 24 . . . cord-010027-r0tl01kq 1303 1 There there EX cord-010027-r0tl01kq 1303 2 was be VBD cord-010027-r0tl01kq 1303 3 a a DT cord-010027-r0tl01kq 1303 4 discrepancy discrepancy NN cord-010027-r0tl01kq 1303 5 compared compare VBN cord-010027-r0tl01kq 1303 6 to to IN cord-010027-r0tl01kq 1303 7 pre pre JJ cord-010027-r0tl01kq 1303 8 - - JJ cord-010027-r0tl01kq 1303 9 treatment treatment JJ cord-010027-r0tl01kq 1303 10 biopsy biopsy NN cord-010027-r0tl01kq 1303 11 in in IN cord-010027-r0tl01kq 1303 12 18 18 CD cord-010027-r0tl01kq 1303 13 cases case NNS cord-010027-r0tl01kq 1303 14 ( ( -LRB- cord-010027-r0tl01kq 1303 15 33 33 CD cord-010027-r0tl01kq 1303 16 % % NN cord-010027-r0tl01kq 1303 17 ) ) -RRB- cord-010027-r0tl01kq 1303 18 : : : cord-010027-r0tl01kq 1303 19 from from IN cord-010027-r0tl01kq 1303 20 wild wild JJ cord-010027-r0tl01kq 1303 21 - - HYPH cord-010027-r0tl01kq 1303 22 type type NN cord-010027-r0tl01kq 1303 23 ( ( -LRB- cord-010027-r0tl01kq 1303 24 wt wt NN cord-010027-r0tl01kq 1303 25 ) ) -RRB- cord-010027-r0tl01kq 1303 26 to to IN cord-010027-r0tl01kq 1303 27 mutant mutant JJ cord-010027-r0tl01kq 1303 28 ( ( -LRB- cord-010027-r0tl01kq 1303 29 mut mut NNP cord-010027-r0tl01kq 1303 30 ) ) -RRB- cord-010027-r0tl01kq 1303 31 in in IN cord-010027-r0tl01kq 1303 32 9 9 CD cord-010027-r0tl01kq 1303 33 , , , cord-010027-r0tl01kq 1303 34 from from IN cord-010027-r0tl01kq 1303 35 mut mut NNP cord-010027-r0tl01kq 1303 36 to to IN cord-010027-r0tl01kq 1303 37 different different JJ cord-010027-r0tl01kq 1303 38 mut mut NN cord-010027-r0tl01kq 1303 39 in in IN cord-010027-r0tl01kq 1303 40 1 1 CD cord-010027-r0tl01kq 1303 41 and and CC cord-010027-r0tl01kq 1303 42 from from IN cord-010027-r0tl01kq 1303 43 mut mut NNP cord-010027-r0tl01kq 1303 44 to to TO cord-010027-r0tl01kq 1303 45 wt wt VB cord-010027-r0tl01kq 1303 46 in in IN cord-010027-r0tl01kq 1303 47 7 7 CD cord-010027-r0tl01kq 1303 48 . . . cord-010027-r0tl01kq 1304 1 One one CD cord-010027-r0tl01kq 1304 2 patient patient NN cord-010027-r0tl01kq 1304 3 changed change VBD cord-010027-r0tl01kq 1304 4 in in IN cord-010027-r0tl01kq 1304 5 3 3 CD cord-010027-r0tl01kq 1304 6 codons codon NNS cord-010027-r0tl01kq 1304 7 ( ( -LRB- cord-010027-r0tl01kq 1304 8 mut mut NNP cord-010027-r0tl01kq 1304 9 to to TO cord-010027-r0tl01kq 1304 10 wt wt VB cord-010027-r0tl01kq 1304 11 in in IN cord-010027-r0tl01kq 1304 12 KRAS KRAS NNP cord-010027-r0tl01kq 1304 13 146 146 CD cord-010027-r0tl01kq 1305 1 /PIK3CA /PIK3CA NNP cord-010027-r0tl01kq 1305 2 545 545 CD cord-010027-r0tl01kq 1305 3 and and CC cord-010027-r0tl01kq 1305 4 wt wt NN cord-010027-r0tl01kq 1305 5 to to TO cord-010027-r0tl01kq 1305 6 mut mut VB cord-010027-r0tl01kq 1305 7 in in IN cord-010027-r0tl01kq 1305 8 KRAS KRAS NNP cord-010027-r0tl01kq 1305 9 12 12 CD cord-010027-r0tl01kq 1305 10 ) ) -RRB- cord-010027-r0tl01kq 1305 11 . . . cord-010027-r0tl01kq 1306 1 In in IN cord-010027-r0tl01kq 1306 2 12 12 CD cord-010027-r0tl01kq 1306 3 patients patient NNS cord-010027-r0tl01kq 1306 4 ( ( -LRB- cord-010027-r0tl01kq 1306 5 22 22 CD cord-010027-r0tl01kq 1306 6 % % NN cord-010027-r0tl01kq 1306 7 ) ) -RRB- cord-010027-r0tl01kq 1306 8 this this DT cord-010027-r0tl01kq 1306 9 changed change VBD cord-010027-r0tl01kq 1306 10 their -PRON- PRP$ cord-010027-r0tl01kq 1306 11 overall overall JJ cord-010027-r0tl01kq 1306 12 EGFR EGFR NNP cord-010027-r0tl01kq 1306 13 pathway pathway NN cord-010027-r0tl01kq 1306 14 status status NN cord-010027-r0tl01kq 1306 15 ( ( -LRB- cord-010027-r0tl01kq 1306 16 6x 6x CD cord-010027-r0tl01kq 1306 17 wt wt NN cord-010027-r0tl01kq 1306 18 to to IN cord-010027-r0tl01kq 1306 19 mut mut NNP cord-010027-r0tl01kq 1306 20 and and CC cord-010027-r0tl01kq 1306 21 6x 6x CD cord-010027-r0tl01kq 1306 22 mut mut NNP cord-010027-r0tl01kq 1306 23 to to TO cord-010027-r0tl01kq 1306 24 wt wt VB cord-010027-r0tl01kq 1306 25 ) ) -RRB- cord-010027-r0tl01kq 1306 26 . . . cord-010027-r0tl01kq 1307 1 Intratumour Intratumour NNP cord-010027-r0tl01kq 1307 2 heterogeneity heterogeneity NN cord-010027-r0tl01kq 1307 3 may may MD cord-010027-r0tl01kq 1307 4 explain explain VB cord-010027-r0tl01kq 1307 5 some some DT cord-010027-r0tl01kq 1307 6 of of IN cord-010027-r0tl01kq 1307 7 the the DT cord-010027-r0tl01kq 1307 8 differences difference NNS cord-010027-r0tl01kq 1307 9 in in IN cord-010027-r0tl01kq 1307 10 EGFR EGFR NNP cord-010027-r0tl01kq 1307 11 pathway pathway NN cord-010027-r0tl01kq 1307 12 mutations mutation NNS cord-010027-r0tl01kq 1307 13 reported report VBN cord-010027-r0tl01kq 1307 14 between between IN cord-010027-r0tl01kq 1307 15 biopsies biopsy NNS cord-010027-r0tl01kq 1307 16 and and CC cord-010027-r0tl01kq 1307 17 resections resection NNS cord-010027-r0tl01kq 1307 18 presenting present VBG cord-010027-r0tl01kq 1307 19 a a DT cord-010027-r0tl01kq 1307 20 challenge challenge NN cord-010027-r0tl01kq 1307 21 to to IN cord-010027-r0tl01kq 1307 22 personalised personalised JJ cord-010027-r0tl01kq 1307 23 medicine medicine NN cord-010027-r0tl01kq 1307 24 . . . cord-010027-r0tl01kq 1308 1 However however RB cord-010027-r0tl01kq 1308 2 , , , cord-010027-r0tl01kq 1308 3 cetuximab cetuximab NNP cord-010027-r0tl01kq 1308 4 may may MD cord-010027-r0tl01kq 1308 5 also also RB cord-010027-r0tl01kq 1308 6 drive drive VB cord-010027-r0tl01kq 1308 7 the the DT cord-010027-r0tl01kq 1308 8 growth growth NN cord-010027-r0tl01kq 1308 9 of of IN cord-010027-r0tl01kq 1308 10 undetectable undetectable JJ cord-010027-r0tl01kq 1308 11 mutant mutant JJ cord-010027-r0tl01kq 1308 12 clones clone NNS cord-010027-r0tl01kq 1308 13 to to IN cord-010027-r0tl01kq 1308 14 detectable detectable JJ cord-010027-r0tl01kq 1308 15 levels level NNS cord-010027-r0tl01kq 1308 16 on on IN cord-010027-r0tl01kq 1308 17 pyrosequencing pyrosequencing NN cord-010027-r0tl01kq 1308 18 . . . cord-010027-r0tl01kq 1309 1 Further further JJ cord-010027-r0tl01kq 1309 2 assessment assessment NN cord-010027-r0tl01kq 1309 3 using use VBG cord-010027-r0tl01kq 1309 4 more more RBR cord-010027-r0tl01kq 1309 5 sensitive sensitive JJ cord-010027-r0tl01kq 1309 6 sequencing sequencing NN cord-010027-r0tl01kq 1309 7 technologies technology NNS cord-010027-r0tl01kq 1309 8 is be VBZ cord-010027-r0tl01kq 1309 9 currently currently RB cord-010027-r0tl01kq 1309 10 being be VBG cord-010027-r0tl01kq 1309 11 employed employ VBN cord-010027-r0tl01kq 1309 12 to to TO cord-010027-r0tl01kq 1309 13 investigate investigate VB cord-010027-r0tl01kq 1309 14 these these DT cord-010027-r0tl01kq 1309 15 differences difference NNS cord-010027-r0tl01kq 1309 16 . . . cord-010027-r0tl01kq 1310 1 There there EX cord-010027-r0tl01kq 1310 2 is be VBZ cord-010027-r0tl01kq 1310 3 a a DT cord-010027-r0tl01kq 1310 4 vast vast JJ cord-010027-r0tl01kq 1310 5 amount amount NN cord-010027-r0tl01kq 1310 6 of of IN cord-010027-r0tl01kq 1310 7 historical historical JJ cord-010027-r0tl01kq 1310 8 FFPE FFPE NNP cord-010027-r0tl01kq 1310 9 material material NN cord-010027-r0tl01kq 1310 10 held hold VBN cord-010027-r0tl01kq 1310 11 in in IN cord-010027-r0tl01kq 1310 12 archives archive NNS cord-010027-r0tl01kq 1310 13 , , , cord-010027-r0tl01kq 1310 14 but but CC cord-010027-r0tl01kq 1310 15 due due IN cord-010027-r0tl01kq 1310 16 to to IN cord-010027-r0tl01kq 1310 17 variations variation NNS cord-010027-r0tl01kq 1310 18 in in IN cord-010027-r0tl01kq 1310 19 fixation fixation NN cord-010027-r0tl01kq 1310 20 and and CC cord-010027-r0tl01kq 1310 21 processing process VBG cord-010027-r0tl01kq 1310 22 this this DT cord-010027-r0tl01kq 1310 23 presents present VBZ cord-010027-r0tl01kq 1310 24 several several JJ cord-010027-r0tl01kq 1310 25 challenges challenge NNS cord-010027-r0tl01kq 1310 26 when when WRB cord-010027-r0tl01kq 1310 27 applying apply VBG cord-010027-r0tl01kq 1310 28 newer new JJR cord-010027-r0tl01kq 1310 29 genomic genomic JJ cord-010027-r0tl01kq 1310 30 technologies technology NNS cord-010027-r0tl01kq 1310 31 to to IN cord-010027-r0tl01kq 1310 32 it -PRON- PRP cord-010027-r0tl01kq 1310 33 . . . cord-010027-r0tl01kq 1311 1 In in IN cord-010027-r0tl01kq 1311 2 this this DT cord-010027-r0tl01kq 1311 3 study study NN cord-010027-r0tl01kq 1311 4 we -PRON- PRP cord-010027-r0tl01kq 1311 5 compared compare VBD cord-010027-r0tl01kq 1311 6 the the DT cord-010027-r0tl01kq 1311 7 genomic genomic JJ cord-010027-r0tl01kq 1311 8 information information NN cord-010027-r0tl01kq 1311 9 obtained obtain VBN cord-010027-r0tl01kq 1311 10 with with IN cord-010027-r0tl01kq 1311 11 the the DT cord-010027-r0tl01kq 1311 12 OncoScan OncoScan NNP cord-010027-r0tl01kq 1311 13 ® ® NNP cord-010027-r0tl01kq 1311 14 FFPE FFPE NNP cord-010027-r0tl01kq 1311 15 Assay Assay NNP cord-010027-r0tl01kq 1311 16 Kit kit NN cord-010027-r0tl01kq 1311 17 ( ( -LRB- cord-010027-r0tl01kq 1311 18 OncoScan OncoScan NNP cord-010027-r0tl01kq 1311 19 ) ) -RRB- cord-010027-r0tl01kq 1311 20 and and CC cord-010027-r0tl01kq 1311 21 next next JJ cord-010027-r0tl01kq 1311 22 generation generation NN cord-010027-r0tl01kq 1311 23 sequencing sequencing NN cord-010027-r0tl01kq 1311 24 ( ( -LRB- cord-010027-r0tl01kq 1311 25 NGS NGS NNP cord-010027-r0tl01kq 1311 26 ) ) -RRB- cord-010027-r0tl01kq 1311 27 . . . cord-010027-r0tl01kq 1312 1 Samples sample NNS cord-010027-r0tl01kq 1312 2 from from IN cord-010027-r0tl01kq 1312 3 378 378 CD cord-010027-r0tl01kq 1312 4 patients patient NNS cord-010027-r0tl01kq 1312 5 were be VBD cord-010027-r0tl01kq 1312 6 obtained obtain VBN cord-010027-r0tl01kq 1312 7 from from IN cord-010027-r0tl01kq 1312 8 10 10 CD cord-010027-r0tl01kq 1312 9 centres centre NNS cord-010027-r0tl01kq 1312 10 taking take VBG cord-010027-r0tl01kq 1312 11 part part NN cord-010027-r0tl01kq 1312 12 in in IN cord-010027-r0tl01kq 1312 13 the the DT cord-010027-r0tl01kq 1312 14 MRC MRC NNP cord-010027-r0tl01kq 1312 15 CR07 CR07 NNP cord-010027-r0tl01kq 1312 16 trial trial NN cord-010027-r0tl01kq 1312 17 of of IN cord-010027-r0tl01kq 1312 18 short short JJ cord-010027-r0tl01kq 1312 19 course course NN cord-010027-r0tl01kq 1312 20 radiotherapy radiotherapy NN cord-010027-r0tl01kq 1312 21 versus versus IN cord-010027-r0tl01kq 1312 22 selective selective JJ cord-010027-r0tl01kq 1312 23 long long JJ cord-010027-r0tl01kq 1312 24 course course NN cord-010027-r0tl01kq 1312 25 chemoradiotherapy chemoradiotherapy NN cord-010027-r0tl01kq 1312 26 in in IN cord-010027-r0tl01kq 1312 27 rectal rectal JJ cord-010027-r0tl01kq 1312 28 cancer cancer NN cord-010027-r0tl01kq 1312 29 . . . cord-010027-r0tl01kq 1313 1 DNA DNA NNP cord-010027-r0tl01kq 1313 2 was be VBD cord-010027-r0tl01kq 1313 3 prepared prepare VBN cord-010027-r0tl01kq 1313 4 using use VBG cord-010027-r0tl01kq 1313 5 Agilent Agilent NNP cord-010027-r0tl01kq 1313 6 SureSelect SureSelect NNP cord-010027-r0tl01kq 1313 7 kits kit NNS cord-010027-r0tl01kq 1313 8 and and CC cord-010027-r0tl01kq 1313 9 sequenced sequence VBN cord-010027-r0tl01kq 1313 10 using use VBG cord-010027-r0tl01kq 1313 11 Illumina Illumina NNP cord-010027-r0tl01kq 1313 12 platforms platform NNS cord-010027-r0tl01kq 1313 13 in in IN cord-010027-r0tl01kq 1313 14 parallel parallel NN cord-010027-r0tl01kq 1313 15 to to IN cord-010027-r0tl01kq 1313 16 analysis analysis NN cord-010027-r0tl01kq 1313 17 using use VBG cord-010027-r0tl01kq 1313 18 the the DT cord-010027-r0tl01kq 1313 19 OncoScan OncoScan NNP cord-010027-r0tl01kq 1313 20 assay assay NN cord-010027-r0tl01kq 1313 21 . . . cord-010027-r0tl01kq 1314 1 For for IN cord-010027-r0tl01kq 1314 2 both both DT cord-010027-r0tl01kq 1314 3 methods method NNS cord-010027-r0tl01kq 1314 4 , , , cord-010027-r0tl01kq 1314 5 quality quality NN cord-010027-r0tl01kq 1314 6 control control NN cord-010027-r0tl01kq 1314 7 ( ( -LRB- cord-010027-r0tl01kq 1314 8 QC QC NNP cord-010027-r0tl01kq 1314 9 ) ) -RRB- cord-010027-r0tl01kq 1314 10 data datum NNS cord-010027-r0tl01kq 1314 11 was be VBD cord-010027-r0tl01kq 1314 12 generated generate VBN cord-010027-r0tl01kq 1314 13 and and CC cord-010027-r0tl01kq 1314 14 the the DT cord-010027-r0tl01kq 1314 15 sample sample NN cord-010027-r0tl01kq 1314 16 classified classify VBN cord-010027-r0tl01kq 1314 17 as as IN cord-010027-r0tl01kq 1314 18 a a DT cord-010027-r0tl01kq 1314 19 ' ' `` cord-010027-r0tl01kq 1314 20 pass pass NN cord-010027-r0tl01kq 1314 21 ' ' '' cord-010027-r0tl01kq 1314 22 if if IN cord-010027-r0tl01kq 1314 23 it -PRON- PRP cord-010027-r0tl01kq 1314 24 fell fall VBD cord-010027-r0tl01kq 1314 25 within within IN cord-010027-r0tl01kq 1314 26 the the DT cord-010027-r0tl01kq 1314 27 pre pre NN cord-010027-r0tl01kq 1314 28 - - JJ cord-010027-r0tl01kq 1314 29 defined define VBN cord-010027-r0tl01kq 1314 30 QC QC NNP cord-010027-r0tl01kq 1314 31 boundaries boundary NNS cord-010027-r0tl01kq 1314 32 . . . cord-010027-r0tl01kq 1315 1 For for IN cord-010027-r0tl01kq 1315 2 the the DT cord-010027-r0tl01kq 1315 3 OncoScan OncoScan NNP cord-010027-r0tl01kq 1315 4 assay assay NN cord-010027-r0tl01kq 1315 5 , , , cord-010027-r0tl01kq 1315 6 copy copy NN cord-010027-r0tl01kq 1315 7 number number NN cord-010027-r0tl01kq 1315 8 ( ( -LRB- cord-010027-r0tl01kq 1315 9 CN CN NNP cord-010027-r0tl01kq 1315 10 ) ) -RRB- cord-010027-r0tl01kq 1315 11 and and CC cord-010027-r0tl01kq 1315 12 somatic somatic JJ cord-010027-r0tl01kq 1315 13 mutation mutation NN cord-010027-r0tl01kq 1315 14 ( ( -LRB- cord-010027-r0tl01kq 1315 15 SM SM NNP cord-010027-r0tl01kq 1315 16 ) ) -RRB- cord-010027-r0tl01kq 1315 17 data datum NNS cord-010027-r0tl01kq 1315 18 was be VBD cord-010027-r0tl01kq 1315 19 further further RB cord-010027-r0tl01kq 1315 20 investigated investigate VBN cord-010027-r0tl01kq 1315 21 . . . cord-010027-r0tl01kq 1316 1 This this DT cord-010027-r0tl01kq 1316 2 study study NN cord-010027-r0tl01kq 1316 3 was be VBD cord-010027-r0tl01kq 1316 4 part part NN cord-010027-r0tl01kq 1316 5 funded fund VBN cord-010027-r0tl01kq 1316 6 by by IN cord-010027-r0tl01kq 1316 7 a a DT cord-010027-r0tl01kq 1316 8 PathSoc PathSoc NNP cord-010027-r0tl01kq 1316 9 Fellowship Fellowship NNP cord-010027-r0tl01kq 1316 10 . . . cord-010027-r0tl01kq 1317 1 In in IN cord-010027-r0tl01kq 1317 2 total total JJ cord-010027-r0tl01kq 1317 3 , , , cord-010027-r0tl01kq 1317 4 272 272 CD cord-010027-r0tl01kq 1317 5 cases case NNS cord-010027-r0tl01kq 1317 6 ( ( -LRB- cord-010027-r0tl01kq 1317 7 72 72 CD cord-010027-r0tl01kq 1317 8 % % NN cord-010027-r0tl01kq 1317 9 ) ) -RRB- cord-010027-r0tl01kq 1317 10 passed pass VBD cord-010027-r0tl01kq 1317 11 the the DT cord-010027-r0tl01kq 1317 12 NGS NGS NNP cord-010027-r0tl01kq 1317 13 QC QC NNP cord-010027-r0tl01kq 1317 14 and and CC cord-010027-r0tl01kq 1317 15 232 232 CD cord-010027-r0tl01kq 1317 16 ( ( -LRB- cord-010027-r0tl01kq 1317 17 61 61 CD cord-010027-r0tl01kq 1317 18 % % NN cord-010027-r0tl01kq 1317 19 ) ) -RRB- cord-010027-r0tl01kq 1317 20 passed pass VBD cord-010027-r0tl01kq 1317 21 the the DT cord-010027-r0tl01kq 1317 22 OncoScan OncoScan NNP cord-010027-r0tl01kq 1317 23 QC QC NNP cord-010027-r0tl01kq 1317 24 . . . cord-010027-r0tl01kq 1318 1 A a DT cord-010027-r0tl01kq 1318 2 total total NN cord-010027-r0tl01kq 1318 3 of of IN cord-010027-r0tl01kq 1318 4 186 186 CD cord-010027-r0tl01kq 1318 5 ( ( -LRB- cord-010027-r0tl01kq 1318 6 49 49 CD cord-010027-r0tl01kq 1318 7 % % NN cord-010027-r0tl01kq 1318 8 ) ) -RRB- cord-010027-r0tl01kq 1318 9 passed pass VBD cord-010027-r0tl01kq 1318 10 QC QC NNP cord-010027-r0tl01kq 1318 11 on on IN cord-010027-r0tl01kq 1318 12 both both DT cord-010027-r0tl01kq 1318 13 platforms platform NNS cord-010027-r0tl01kq 1318 14 with with IN cord-010027-r0tl01kq 1318 15 marked marked JJ cord-010027-r0tl01kq 1318 16 variability variability NN cord-010027-r0tl01kq 1318 17 in in IN cord-010027-r0tl01kq 1318 18 sample sample NN cord-010027-r0tl01kq 1318 19 pass pass NN cord-010027-r0tl01kq 1318 20 rates rate NNS cord-010027-r0tl01kq 1318 21 between between IN cord-010027-r0tl01kq 1318 22 the the DT cord-010027-r0tl01kq 1318 23 10 10 CD cord-010027-r0tl01kq 1318 24 centres centre NNS cord-010027-r0tl01kq 1318 25 for for IN cord-010027-r0tl01kq 1318 26 the the DT cord-010027-r0tl01kq 1318 27 NGS NGS NNP cord-010027-r0tl01kq 1318 28 ( ( -LRB- cord-010027-r0tl01kq 1318 29 range range NN cord-010027-r0tl01kq 1318 30 0 0 CD cord-010027-r0tl01kq 1318 31 % % NN cord-010027-r0tl01kq 1318 32 to to TO cord-010027-r0tl01kq 1318 33 100 100 CD cord-010027-r0tl01kq 1318 34 % % NN cord-010027-r0tl01kq 1318 35 ) ) -RRB- cord-010027-r0tl01kq 1318 36 and and CC cord-010027-r0tl01kq 1318 37 OncoScan OncoScan NNP cord-010027-r0tl01kq 1318 38 ( ( -LRB- cord-010027-r0tl01kq 1318 39 ranges range VBZ cord-010027-r0tl01kq 1318 40 33 33 CD cord-010027-r0tl01kq 1318 41 % % NN cord-010027-r0tl01kq 1318 42 to to IN cord-010027-r0tl01kq 1318 43 84 84 CD cord-010027-r0tl01kq 1318 44 % % NN cord-010027-r0tl01kq 1318 45 ) ) -RRB- cord-010027-r0tl01kq 1318 46 . . . cord-010027-r0tl01kq 1319 1 When when WRB cord-010027-r0tl01kq 1319 2 assessed assess VBN cord-010027-r0tl01kq 1319 3 manually manually RB cord-010027-r0tl01kq 1319 4 , , , cord-010027-r0tl01kq 1319 5 the the DT cord-010027-r0tl01kq 1319 6 OncoScan OncoScan NNP cord-010027-r0tl01kq 1319 7 SM SM NNP cord-010027-r0tl01kq 1319 8 data datum NNS cord-010027-r0tl01kq 1319 9 was be VBD cord-010027-r0tl01kq 1319 10 considered consider VBN cord-010027-r0tl01kq 1319 11 acceptable acceptable JJ cord-010027-r0tl01kq 1319 12 for for IN cord-010027-r0tl01kq 1319 13 273 273 CD cord-010027-r0tl01kq 1319 14 cases case NNS cord-010027-r0tl01kq 1319 15 ( ( -LRB- cord-010027-r0tl01kq 1319 16 72 72 CD cord-010027-r0tl01kq 1319 17 % % NN cord-010027-r0tl01kq 1319 18 ) ) -RRB- cord-010027-r0tl01kq 1319 19 , , , cord-010027-r0tl01kq 1319 20 which which WDT cord-010027-r0tl01kq 1319 21 included include VBD cord-010027-r0tl01kq 1319 22 40 40 CD cord-010027-r0tl01kq 1319 23 initially initially RB cord-010027-r0tl01kq 1319 24 classified classify VBN cord-010027-r0tl01kq 1319 25 as as IN cord-010027-r0tl01kq 1319 26 ' ' `` cord-010027-r0tl01kq 1319 27 failed fail VBD cord-010027-r0tl01kq 1319 28 ' ' '' cord-010027-r0tl01kq 1319 29 by by IN cord-010027-r0tl01kq 1319 30 the the DT cord-010027-r0tl01kq 1319 31 QC QC NNP cord-010027-r0tl01kq 1319 32 data datum NNS cord-010027-r0tl01kq 1319 33 . . . cord-010027-r0tl01kq 1320 1 Similarly similarly RB cord-010027-r0tl01kq 1320 2 , , , cord-010027-r0tl01kq 1320 3 the the DT cord-010027-r0tl01kq 1320 4 OncoScan OncoScan NNP cord-010027-r0tl01kq 1320 5 CNV CNV NNP cord-010027-r0tl01kq 1320 6 data datum NNS cord-010027-r0tl01kq 1320 7 was be VBD cord-010027-r0tl01kq 1320 8 interpretable interpretable JJ cord-010027-r0tl01kq 1320 9 for for IN cord-010027-r0tl01kq 1320 10 the the DT cord-010027-r0tl01kq 1320 11 majority majority NN cord-010027-r0tl01kq 1320 12 of of IN cord-010027-r0tl01kq 1320 13 cases case NNS cord-010027-r0tl01kq 1320 14 . . . cord-010027-r0tl01kq 1321 1 This this DT cord-010027-r0tl01kq 1321 2 study study NN cord-010027-r0tl01kq 1321 3 has have VBZ cord-010027-r0tl01kq 1321 4 shown show VBN cord-010027-r0tl01kq 1321 5 that that IN cord-010027-r0tl01kq 1321 6 whilst whilst IN cord-010027-r0tl01kq 1321 7 historical historical JJ cord-010027-r0tl01kq 1321 8 DNA dna NN cord-010027-r0tl01kq 1321 9 held hold VBN cord-010027-r0tl01kq 1321 10 in in IN cord-010027-r0tl01kq 1321 11 the the DT cord-010027-r0tl01kq 1321 12 FFPE FFPE NNP cord-010027-r0tl01kq 1321 13 blocks block NNS cord-010027-r0tl01kq 1321 14 of of IN cord-010027-r0tl01kq 1321 15 archival archival JJ cord-010027-r0tl01kq 1321 16 clinical clinical JJ cord-010027-r0tl01kq 1321 17 trials trial NNS cord-010027-r0tl01kq 1321 18 like like IN cord-010027-r0tl01kq 1321 19 MRC MRC NNP cord-010027-r0tl01kq 1321 20 CR07 CR07 NNP cord-010027-r0tl01kq 1321 21 can can MD cord-010027-r0tl01kq 1321 22 present present VB cord-010027-r0tl01kq 1321 23 challenges challenge NNS cord-010027-r0tl01kq 1321 24 when when WRB cord-010027-r0tl01kq 1321 25 using use VBG cord-010027-r0tl01kq 1321 26 new new JJ cord-010027-r0tl01kq 1321 27 genomic genomic JJ cord-010027-r0tl01kq 1321 28 technologies technology NNS cord-010027-r0tl01kq 1321 29 , , , cord-010027-r0tl01kq 1321 30 a a DT cord-010027-r0tl01kq 1321 31 large large JJ cord-010027-r0tl01kq 1321 32 proportion proportion NN cord-010027-r0tl01kq 1321 33 of of IN cord-010027-r0tl01kq 1321 34 samples sample NNS cord-010027-r0tl01kq 1321 35 can can MD cord-010027-r0tl01kq 1321 36 still still RB cord-010027-r0tl01kq 1321 37 yield yield VB cord-010027-r0tl01kq 1321 38 valuable valuable JJ cord-010027-r0tl01kq 1321 39 genomic genomic JJ cord-010027-r0tl01kq 1321 40 data datum NNS cord-010027-r0tl01kq 1321 41 . . . cord-010027-r0tl01kq 1322 1 Marked marked JJ cord-010027-r0tl01kq 1322 2 variation variation NN cord-010027-r0tl01kq 1322 3 exists exist VBZ cord-010027-r0tl01kq 1322 4 in in IN cord-010027-r0tl01kq 1322 5 the the DT cord-010027-r0tl01kq 1322 6 quality quality NN cord-010027-r0tl01kq 1322 7 of of IN cord-010027-r0tl01kq 1322 8 genomic genomic JJ cord-010027-r0tl01kq 1322 9 material material NN cord-010027-r0tl01kq 1322 10 between between IN cord-010027-r0tl01kq 1322 11 centres centre NNS cord-010027-r0tl01kq 1322 12 confirming confirm VBG cord-010027-r0tl01kq 1322 13 that that IN cord-010027-r0tl01kq 1322 14 differences difference NNS cord-010027-r0tl01kq 1322 15 in in IN cord-010027-r0tl01kq 1322 16 specimen specimen JJ cord-010027-r0tl01kq 1322 17 handling handling NN cord-010027-r0tl01kq 1322 18 affect affect NN cord-010027-r0tl01kq 1322 19 DNA dna NN cord-010027-r0tl01kq 1322 20 quality quality NN cord-010027-r0tl01kq 1322 21 . . . cord-010027-r0tl01kq 1323 1 Prospective prospective JJ cord-010027-r0tl01kq 1323 2 trials trial NNS cord-010027-r0tl01kq 1323 3 must must MD cord-010027-r0tl01kq 1323 4 address address VB cord-010027-r0tl01kq 1323 5 this this DT cord-010027-r0tl01kq 1323 6 by by IN cord-010027-r0tl01kq 1323 7 standardising standardise VBG cord-010027-r0tl01kq 1323 8 fixation fixation NN cord-010027-r0tl01kq 1323 9 and and CC cord-010027-r0tl01kq 1323 10 processing processing NN cord-010027-r0tl01kq 1323 11 protocols protocol NNS cord-010027-r0tl01kq 1323 12 . . . cord-010027-r0tl01kq 1324 1 The the DT cord-010027-r0tl01kq 1324 2 plane plane NN cord-010027-r0tl01kq 1324 3 of of IN cord-010027-r0tl01kq 1324 4 colon colon NN cord-010027-r0tl01kq 1324 5 cancer cancer NN cord-010027-r0tl01kq 1324 6 resection resection NN cord-010027-r0tl01kq 1324 7 has have VBZ cord-010027-r0tl01kq 1324 8 recently recently RB cord-010027-r0tl01kq 1324 9 been be VBN cord-010027-r0tl01kq 1324 10 shown show VBN cord-010027-r0tl01kq 1324 11 to to TO cord-010027-r0tl01kq 1324 12 predict predict VB cord-010027-r0tl01kq 1324 13 survival survival NN cord-010027-r0tl01kq 1324 14 . . . cord-010027-r0tl01kq 1325 1 Complete complete JJ cord-010027-r0tl01kq 1325 2 mesocolic mesocolic NN cord-010027-r0tl01kq 1325 3 excision excision NN cord-010027-r0tl01kq 1325 4 ( ( -LRB- cord-010027-r0tl01kq 1325 5 CME CME NNP cord-010027-r0tl01kq 1325 6 ) ) -RRB- cord-010027-r0tl01kq 1325 7 with with IN cord-010027-r0tl01kq 1325 8 central central JJ cord-010027-r0tl01kq 1325 9 vascular vascular JJ cord-010027-r0tl01kq 1325 10 ligation ligation NN cord-010027-r0tl01kq 1325 11 ( ( -LRB- cord-010027-r0tl01kq 1325 12 CVL CVL NNP cord-010027-r0tl01kq 1325 13 ) ) -RRB- cord-010027-r0tl01kq 1325 14 produces produce VBZ cord-010027-r0tl01kq 1325 15 an an DT cord-010027-r0tl01kq 1325 16 oncologically oncologically RB cord-010027-r0tl01kq 1325 17 superior superior JJ cord-010027-r0tl01kq 1325 18 specimen specimen NN cord-010027-r0tl01kq 1325 19 and and CC cord-010027-r0tl01kq 1325 20 appears appear VBZ cord-010027-r0tl01kq 1325 21 to to TO cord-010027-r0tl01kq 1325 22 be be VB cord-010027-r0tl01kq 1325 23 related relate VBN cord-010027-r0tl01kq 1325 24 to to IN cord-010027-r0tl01kq 1325 25 optimal optimal JJ cord-010027-r0tl01kq 1325 26 outcomes outcome NNS cord-010027-r0tl01kq 1325 27 . . . cord-010027-r0tl01kq 1326 1 We -PRON- PRP cord-010027-r0tl01kq 1326 2 aimed aim VBD cord-010027-r0tl01kq 1326 3 to to TO cord-010027-r0tl01kq 1326 4 assess assess VB cord-010027-r0tl01kq 1326 5 whether whether IN cord-010027-r0tl01kq 1326 6 a a DT cord-010027-r0tl01kq 1326 7 regional regional JJ cord-010027-r0tl01kq 1326 8 educational educational JJ cord-010027-r0tl01kq 1326 9 programme programme NN cord-010027-r0tl01kq 1326 10 in in IN cord-010027-r0tl01kq 1326 11 CME CME NNP cord-010027-r0tl01kq 1326 12 with with IN cord-010027-r0tl01kq 1326 13 CVL CVL NNP cord-010027-r0tl01kq 1326 14 led lead VBD cord-010027-r0tl01kq 1326 15 to to IN cord-010027-r0tl01kq 1326 16 an an DT cord-010027-r0tl01kq 1326 17 improvement improvement NN cord-010027-r0tl01kq 1326 18 in in IN cord-010027-r0tl01kq 1326 19 the the DT cord-010027-r0tl01kq 1326 20 quality quality NN cord-010027-r0tl01kq 1326 21 of of IN cord-010027-r0tl01kq 1326 22 colon colon NN cord-010027-r0tl01kq 1326 23 cancer cancer NN cord-010027-r0tl01kq 1326 24 specimens specimen NNS cord-010027-r0tl01kq 1326 25 . . . cord-010027-r0tl01kq 1327 1 Following follow VBG cord-010027-r0tl01kq 1327 2 a a DT cord-010027-r0tl01kq 1327 3 regional regional JJ cord-010027-r0tl01kq 1327 4 educational educational JJ cord-010027-r0tl01kq 1327 5 programme programme NN cord-010027-r0tl01kq 1327 6 in in IN cord-010027-r0tl01kq 1327 7 CME CME NNP cord-010027-r0tl01kq 1327 8 with with IN cord-010027-r0tl01kq 1327 9 CVL CVL NNP cord-010027-r0tl01kq 1327 10 in in IN cord-010027-r0tl01kq 1327 11 the the DT cord-010027-r0tl01kq 1327 12 Capital Capital NNP cord-010027-r0tl01kq 1327 13 and and CC cord-010027-r0tl01kq 1327 14 Zealand Zealand NNP cord-010027-r0tl01kq 1327 15 areas area NNS cord-010027-r0tl01kq 1327 16 of of IN cord-010027-r0tl01kq 1327 17 Denmark Denmark NNP cord-010027-r0tl01kq 1327 18 , , , cord-010027-r0tl01kq 1327 19 686 686 CD cord-010027-r0tl01kq 1327 20 cases case NNS cord-010027-r0tl01kq 1327 21 of of IN cord-010027-r0tl01kq 1327 22 primary primary JJ cord-010027-r0tl01kq 1327 23 colon colon NN cord-010027-r0tl01kq 1327 24 cancer cancer NN cord-010027-r0tl01kq 1327 25 resected resect VBD cord-010027-r0tl01kq 1327 26 across across IN cord-010027-r0tl01kq 1327 27 six six CD cord-010027-r0tl01kq 1327 28 hospitals hospital NNS cord-010027-r0tl01kq 1327 29 were be VBD cord-010027-r0tl01kq 1327 30 assessed assess VBN cord-010027-r0tl01kq 1327 31 by by IN cord-010027-r0tl01kq 1327 32 grading grade VBG cord-010027-r0tl01kq 1327 33 the the DT cord-010027-r0tl01kq 1327 34 plane plane NN cord-010027-r0tl01kq 1327 35 of of IN cord-010027-r0tl01kq 1327 36 surgery surgery NN cord-010027-r0tl01kq 1327 37 and and CC cord-010027-r0tl01kq 1327 38 undertaking undertaking NN cord-010027-r0tl01kq 1327 39 tissue tissue NN cord-010027-r0tl01kq 1327 40 morphometry morphometry NN cord-010027-r0tl01kq 1327 41 . . . cord-010027-r0tl01kq 1328 1 These these DT cord-010027-r0tl01kq 1328 2 were be VBD cord-010027-r0tl01kq 1328 3 compared compare VBN cord-010027-r0tl01kq 1328 4 to to IN cord-010027-r0tl01kq 1328 5 263 263 CD cord-010027-r0tl01kq 1328 6 specimens specimen NNS cord-010027-r0tl01kq 1328 7 resected resect VBN cord-010027-r0tl01kq 1328 8 prior prior RB cord-010027-r0tl01kq 1328 9 to to IN cord-010027-r0tl01kq 1328 10 the the DT cord-010027-r0tl01kq 1328 11 educational educational JJ cord-010027-r0tl01kq 1328 12 programme programme NN cord-010027-r0tl01kq 1328 13 . . . cord-010027-r0tl01kq 1329 1 This this DT cord-010027-r0tl01kq 1329 2 work work NN cord-010027-r0tl01kq 1329 3 was be VBD cord-010027-r0tl01kq 1329 4 partly partly RB cord-010027-r0tl01kq 1329 5 supported support VBN cord-010027-r0tl01kq 1329 6 by by IN cord-010027-r0tl01kq 1329 7 a a DT cord-010027-r0tl01kq 1329 8 PathSoc PathSoc NNP cord-010027-r0tl01kq 1329 9 undergraduate undergraduate NN cord-010027-r0tl01kq 1329 10 bursary bursary NN cord-010027-r0tl01kq 1329 11 . . . cord-010027-r0tl01kq 1330 1 Across across IN cord-010027-r0tl01kq 1330 2 the the DT cord-010027-r0tl01kq 1330 3 region region NN cord-010027-r0tl01kq 1330 4 , , , cord-010027-r0tl01kq 1330 5 the the DT cord-010027-r0tl01kq 1330 6 mesocolic mesocolic NN cord-010027-r0tl01kq 1330 7 plane plane NN cord-010027-r0tl01kq 1330 8 resection resection NN cord-010027-r0tl01kq 1330 9 rate rate NN cord-010027-r0tl01kq 1330 10 improved improve VBN cord-010027-r0tl01kq 1330 11 from from IN cord-010027-r0tl01kq 1330 12 58 58 CD cord-010027-r0tl01kq 1330 13 % % NN cord-010027-r0tl01kq 1330 14 to to IN cord-010027-r0tl01kq 1330 15 77 77 CD cord-010027-r0tl01kq 1330 16 % % NN cord-010027-r0tl01kq 1330 17 ( ( -LRB- cord-010027-r0tl01kq 1330 18 p<0.0001 p<0.0001 NNP cord-010027-r0tl01kq 1330 19 ) ) -RRB- cord-010027-r0tl01kq 1330 20 . . . cord-010027-r0tl01kq 1331 1 Hillerød Hillerød NNP cord-010027-r0tl01kq 1331 2 hospital hospital NN cord-010027-r0tl01kq 1331 3 had have VBD cord-010027-r0tl01kq 1331 4 implemented implement VBN cord-010027-r0tl01kq 1331 5 CME CME NNP cord-010027-r0tl01kq 1331 6 with with IN cord-010027-r0tl01kq 1331 7 CVL CVL NNP cord-010027-r0tl01kq 1331 8 as as IN cord-010027-r0tl01kq 1331 9 standard standard NN cord-010027-r0tl01kq 1331 10 prior prior RB cord-010027-r0tl01kq 1331 11 to to IN cord-010027-r0tl01kq 1331 12 the the DT cord-010027-r0tl01kq 1331 13 educational educational JJ cord-010027-r0tl01kq 1331 14 programme programme NN cord-010027-r0tl01kq 1331 15 and and CC cord-010027-r0tl01kq 1331 16 continued continue VBD cord-010027-r0tl01kq 1331 17 to to TO cord-010027-r0tl01kq 1331 18 produce produce VB cord-010027-r0tl01kq 1331 19 optimal optimal JJ cord-010027-r0tl01kq 1331 20 specimens specimen NNS cord-010027-r0tl01kq 1331 21 . . . cord-010027-r0tl01kq 1332 1 Three three CD cord-010027-r0tl01kq 1332 2 of of IN cord-010027-r0tl01kq 1332 3 the the DT cord-010027-r0tl01kq 1332 4 other other JJ cord-010027-r0tl01kq 1332 5 hospitals hospital NNS cord-010027-r0tl01kq 1332 6 showed show VBD cord-010027-r0tl01kq 1332 7 a a DT cord-010027-r0tl01kq 1332 8 significant significant JJ cord-010027-r0tl01kq 1332 9 improvement improvement NN cord-010027-r0tl01kq 1332 10 in in IN cord-010027-r0tl01kq 1332 11 the the DT cord-010027-r0tl01kq 1332 12 plane plane NN cord-010027-r0tl01kq 1332 13 of of IN cord-010027-r0tl01kq 1332 14 surgical surgical JJ cord-010027-r0tl01kq 1332 15 resection resection NN cord-010027-r0tl01kq 1332 16 . . . cord-010027-r0tl01kq 1333 1 Hillerød Hillerød NNP cord-010027-r0tl01kq 1333 2 specimens specimen NNS cord-010027-r0tl01kq 1333 3 continued continue VBD cord-010027-r0tl01kq 1333 4 to to TO cord-010027-r0tl01kq 1333 5 be be VB cord-010027-r0tl01kq 1333 6 more more RBR cord-010027-r0tl01kq 1333 7 radical radical JJ cord-010027-r0tl01kq 1333 8 with with IN cord-010027-r0tl01kq 1333 9 a a DT cord-010027-r0tl01kq 1333 10 greater great JJR cord-010027-r0tl01kq 1333 11 distance distance NN cord-010027-r0tl01kq 1333 12 between between IN cord-010027-r0tl01kq 1333 13 the the DT cord-010027-r0tl01kq 1333 14 tumour tumour NN cord-010027-r0tl01kq 1333 15 and and CC cord-010027-r0tl01kq 1333 16 the the DT cord-010027-r0tl01kq 1333 17 high high JJ cord-010027-r0tl01kq 1333 18 tie tie NN cord-010027-r0tl01kq 1333 19 , , , cord-010027-r0tl01kq 1333 20 area area NN cord-010027-r0tl01kq 1333 21 of of IN cord-010027-r0tl01kq 1333 22 mesentery mesentery NN cord-010027-r0tl01kq 1333 23 and and CC cord-010027-r0tl01kq 1333 24 lymph lymph NN cord-010027-r0tl01kq 1333 25 node node NN cord-010027-r0tl01kq 1333 26 yield yield NN cord-010027-r0tl01kq 1333 27 compared compare VBN cord-010027-r0tl01kq 1333 28 to to IN cord-010027-r0tl01kq 1333 29 the the DT cord-010027-r0tl01kq 1333 30 other other JJ cord-010027-r0tl01kq 1333 31 five five CD cord-010027-r0tl01kq 1333 32 hospitals hospital NNS cord-010027-r0tl01kq 1333 33 . . . cord-010027-r0tl01kq 1334 1 A a DT cord-010027-r0tl01kq 1334 2 multidisciplinary multidisciplinary JJ cord-010027-r0tl01kq 1334 3 regional regional JJ cord-010027-r0tl01kq 1334 4 educational educational JJ cord-010027-r0tl01kq 1334 5 programme programme NN cord-010027-r0tl01kq 1334 6 in in IN cord-010027-r0tl01kq 1334 7 CME CME NNP cord-010027-r0tl01kq 1334 8 with with IN cord-010027-r0tl01kq 1334 9 CVL CVL NNP cord-010027-r0tl01kq 1334 10 has have VBZ cord-010027-r0tl01kq 1334 11 improved improve VBN cord-010027-r0tl01kq 1334 12 the the DT cord-010027-r0tl01kq 1334 13 oncological oncological JJ cord-010027-r0tl01kq 1334 14 quality quality NN cord-010027-r0tl01kq 1334 15 of of IN cord-010027-r0tl01kq 1334 16 colon colon NN cord-010027-r0tl01kq 1334 17 cancer cancer NN cord-010027-r0tl01kq 1334 18 specimens specimen NNS cord-010027-r0tl01kq 1334 19 as as IN cord-010027-r0tl01kq 1334 20 assessed assess VBN cord-010027-r0tl01kq 1334 21 by by IN cord-010027-r0tl01kq 1334 22 mesocolic mesocolic NNP cord-010027-r0tl01kq 1334 23 planes plane NNS cord-010027-r0tl01kq 1334 24 , , , cord-010027-r0tl01kq 1334 25 however however RB cord-010027-r0tl01kq 1334 26 , , , cord-010027-r0tl01kq 1334 27 there there EX cord-010027-r0tl01kq 1334 28 has have VBZ cord-010027-r0tl01kq 1334 29 been be VBN cord-010027-r0tl01kq 1334 30 no no DT cord-010027-r0tl01kq 1334 31 significant significant JJ cord-010027-r0tl01kq 1334 32 effect effect NN cord-010027-r0tl01kq 1334 33 on on IN cord-010027-r0tl01kq 1334 34 the the DT cord-010027-r0tl01kq 1334 35 amount amount NN cord-010027-r0tl01kq 1334 36 of of IN cord-010027-r0tl01kq 1334 37 tissue tissue NN cord-010027-r0tl01kq 1334 38 resected resect VBN cord-010027-r0tl01kq 1334 39 . . . cord-010027-r0tl01kq 1335 1 Surgeons surgeon NNS cord-010027-r0tl01kq 1335 2 at at IN cord-010027-r0tl01kq 1335 3 Hillerød Hillerød NNP cord-010027-r0tl01kq 1335 4 continue continue VBP cord-010027-r0tl01kq 1335 5 to to TO cord-010027-r0tl01kq 1335 6 produce produce VB cord-010027-r0tl01kq 1335 7 more more JJR cord-010027-r0tl01kq 1335 8 radical radical JJ cord-010027-r0tl01kq 1335 9 specimens specimen NNS cord-010027-r0tl01kq 1335 10 suggesting suggest VBG cord-010027-r0tl01kq 1335 11 that that IN cord-010027-r0tl01kq 1335 12 such such JJ cord-010027-r0tl01kq 1335 13 educational educational JJ cord-010027-r0tl01kq 1335 14 programmes programme NNS cord-010027-r0tl01kq 1335 15 are be VBP cord-010027-r0tl01kq 1335 16 not not RB cord-010027-r0tl01kq 1335 17 alone alone JJ cord-010027-r0tl01kq 1335 18 sufficient sufficient JJ cord-010027-r0tl01kq 1335 19 to to TO cord-010027-r0tl01kq 1335 20 increase increase VB cord-010027-r0tl01kq 1335 21 the the DT cord-010027-r0tl01kq 1335 22 amount amount NN cord-010027-r0tl01kq 1335 23 of of IN cord-010027-r0tl01kq 1335 24 tissue tissue NN cord-010027-r0tl01kq 1335 25 resected resect VBN cord-010027-r0tl01kq 1335 26 around around IN cord-010027-r0tl01kq 1335 27 the the DT cord-010027-r0tl01kq 1335 28 tumour tumour NN cord-010027-r0tl01kq 1335 29 . . . cord-010027-r0tl01kq 1336 1 Hillerød Hillerød NNP cord-010027-r0tl01kq 1336 2 have have VBP cord-010027-r0tl01kq 1336 3 recently recently RB cord-010027-r0tl01kq 1336 4 published publish VBN cord-010027-r0tl01kq 1336 5 their -PRON- PRP$ cord-010027-r0tl01kq 1336 6 long long JJ cord-010027-r0tl01kq 1336 7 term term NN cord-010027-r0tl01kq 1336 8 outcomes outcome NNS cord-010027-r0tl01kq 1336 9 with with IN cord-010027-r0tl01kq 1336 10 survivals survival NNS cord-010027-r0tl01kq 1336 11 being be VBG cord-010027-r0tl01kq 1336 12 10 10 CD cord-010027-r0tl01kq 1336 13 % % NN cord-010027-r0tl01kq 1336 14 higher high JJR cord-010027-r0tl01kq 1336 15 when when WRB cord-010027-r0tl01kq 1336 16 compared compare VBN cord-010027-r0tl01kq 1336 17 to to IN cord-010027-r0tl01kq 1336 18 other other JJ cord-010027-r0tl01kq 1336 19 hospitals hospital NNS cord-010027-r0tl01kq 1336 20 across across IN cord-010027-r0tl01kq 1336 21 the the DT cord-010027-r0tl01kq 1336 22 region region NN cord-010027-r0tl01kq 1336 23 . . . cord-010027-r0tl01kq 1337 1 Further further JJ cord-010027-r0tl01kq 1337 2 engagement engagement NN cord-010027-r0tl01kq 1337 3 is be VBZ cord-010027-r0tl01kq 1337 4 now now RB cord-010027-r0tl01kq 1337 5 necessary necessary JJ cord-010027-r0tl01kq 1337 6 to to TO cord-010027-r0tl01kq 1337 7 ensure ensure VB cord-010027-r0tl01kq 1337 8 that that IN cord-010027-r0tl01kq 1337 9 optimal optimal JJ cord-010027-r0tl01kq 1337 10 outcomes outcome NNS cord-010027-r0tl01kq 1337 11 are be VBP cord-010027-r0tl01kq 1337 12 achieved achieve VBN cord-010027-r0tl01kq 1337 13 across across IN cord-010027-r0tl01kq 1337 14 the the DT cord-010027-r0tl01kq 1337 15 region region NN cord-010027-r0tl01kq 1337 16 . . . cord-010027-r0tl01kq 1338 1 Investigating investigate VBG cord-010027-r0tl01kq 1338 2 the the DT cord-010027-r0tl01kq 1338 3 Faecal Faecal NNP cord-010027-r0tl01kq 1338 4 Microbiome Microbiome NNP cord-010027-r0tl01kq 1338 5 in in IN cord-010027-r0tl01kq 1338 6 Formalin Formalin NNP cord-010027-r0tl01kq 1338 7 Fixed fix VBN cord-010027-r0tl01kq 1338 8 Paraffin paraffin NN cord-010027-r0tl01kq 1338 9 Embedded embed VBN cord-010027-r0tl01kq 1338 10 ( ( -LRB- cord-010027-r0tl01kq 1338 11 FFPE FFPE NNP cord-010027-r0tl01kq 1338 12 ) ) -RRB- cord-010027-r0tl01kq 1338 13 Material material NN cord-010027-r0tl01kq 1338 14 P p NN cord-010027-r0tl01kq 1338 15 ITR ITR NNP cord-010027-r0tl01kq 1338 16 Jobling Jobling NNP cord-010027-r0tl01kq 1338 17 1 1 CD cord-010027-r0tl01kq 1338 18 ; ; : cord-010027-r0tl01kq 1338 19 M M NNP cord-010027-r0tl01kq 1338 20 Taylor Taylor NNP cord-010027-r0tl01kq 1338 21 2 2 CD cord-010027-r0tl01kq 1338 22 ; ; : cord-010027-r0tl01kq 1338 23 C C NNP cord-010027-r0tl01kq 1338 24 Young Young NNP cord-010027-r0tl01kq 1338 25 2 2 CD cord-010027-r0tl01kq 1338 26 ; ; : cord-010027-r0tl01kq 1338 27 HM HM NNP cord-010027-r0tl01kq 1338 28 Wood Wood NNP cord-010027-r0tl01kq 1338 29 2 2 CD cord-010027-r0tl01kq 1338 30 ; ; : cord-010027-r0tl01kq 1338 31 P p NN cord-010027-r0tl01kq 1338 32 Quirke Quirke NNP cord-010027-r0tl01kq 1338 33 2 2 CD cord-010027-r0tl01kq 1338 34 1 1 CD cord-010027-r0tl01kq 1338 35 University University NNP cord-010027-r0tl01kq 1338 36 of of IN cord-010027-r0tl01kq 1338 37 Leeds Leeds NNP cord-010027-r0tl01kq 1338 38 , , , cord-010027-r0tl01kq 1338 39 Leeds Leeds NNP cord-010027-r0tl01kq 1338 40 , , , cord-010027-r0tl01kq 1338 41 UK UK NNP cord-010027-r0tl01kq 1338 42 ; ; : cord-010027-r0tl01kq 1338 43 2 2 CD cord-010027-r0tl01kq 1338 44 Leeds Leeds NNP cord-010027-r0tl01kq 1338 45 Institute Institute NNP cord-010027-r0tl01kq 1338 46 of of IN cord-010027-r0tl01kq 1338 47 Cancer Cancer NNP cord-010027-r0tl01kq 1338 48 and and CC cord-010027-r0tl01kq 1338 49 Pathology Pathology NNP cord-010027-r0tl01kq 1338 50 , , , cord-010027-r0tl01kq 1338 51 Leeds Leeds NNP cord-010027-r0tl01kq 1338 52 , , , cord-010027-r0tl01kq 1338 53 UK UK NNP cord-010027-r0tl01kq 1338 54 Purpose Purpose NNP cord-010027-r0tl01kq 1338 55 : : : cord-010027-r0tl01kq 1338 56 Research research NN cord-010027-r0tl01kq 1338 57 into into IN cord-010027-r0tl01kq 1338 58 the the DT cord-010027-r0tl01kq 1338 59 faecal faecal JJ cord-010027-r0tl01kq 1338 60 microbiome microbiome NN cord-010027-r0tl01kq 1338 61 has have VBZ cord-010027-r0tl01kq 1338 62 shown show VBN cord-010027-r0tl01kq 1338 63 a a DT cord-010027-r0tl01kq 1338 64 diverse diverse JJ cord-010027-r0tl01kq 1338 65 population population NN cord-010027-r0tl01kq 1338 66 with with IN cord-010027-r0tl01kq 1338 67 a a DT cord-010027-r0tl01kq 1338 68 high high JJ cord-010027-r0tl01kq 1338 69 level level NN cord-010027-r0tl01kq 1338 70 of of IN cord-010027-r0tl01kq 1338 71 variability variability NN cord-010027-r0tl01kq 1338 72 between between IN cord-010027-r0tl01kq 1338 73 individuals individual NNS cord-010027-r0tl01kq 1338 74 . . . cord-010027-r0tl01kq 1339 1 Altered altered JJ cord-010027-r0tl01kq 1339 2 faecal faecal JJ cord-010027-r0tl01kq 1339 3 microbiomes microbiome NNS cord-010027-r0tl01kq 1339 4 are be VBP cord-010027-r0tl01kq 1339 5 present present JJ cord-010027-r0tl01kq 1339 6 in in IN cord-010027-r0tl01kq 1339 7 a a DT cord-010027-r0tl01kq 1339 8 range range NN cord-010027-r0tl01kq 1339 9 of of IN cord-010027-r0tl01kq 1339 10 diseases disease NNS cord-010027-r0tl01kq 1339 11 but but CC cord-010027-r0tl01kq 1339 12 work work NN cord-010027-r0tl01kq 1339 13 remains remain VBZ cord-010027-r0tl01kq 1339 14 to to TO cord-010027-r0tl01kq 1339 15 understand understand VB cord-010027-r0tl01kq 1339 16 their -PRON- PRP$ cord-010027-r0tl01kq 1339 17 role role NN cord-010027-r0tl01kq 1339 18 in in IN cord-010027-r0tl01kq 1339 19 gastrointestinal gastrointestinal JJ cord-010027-r0tl01kq 1339 20 disease disease NN cord-010027-r0tl01kq 1339 21 . . . cord-010027-r0tl01kq 1340 1 Current current JJ cord-010027-r0tl01kq 1340 2 research research NN cord-010027-r0tl01kq 1340 3 into into IN cord-010027-r0tl01kq 1340 4 the the DT cord-010027-r0tl01kq 1340 5 microbiome microbiome NN cord-010027-r0tl01kq 1340 6 makes make VBZ cord-010027-r0tl01kq 1340 7 use use NN cord-010027-r0tl01kq 1340 8 of of IN cord-010027-r0tl01kq 1340 9 fresh fresh JJ cord-010027-r0tl01kq 1340 10 or or CC cord-010027-r0tl01kq 1340 11 frozen frozen JJ cord-010027-r0tl01kq 1340 12 faecal faecal JJ cord-010027-r0tl01kq 1340 13 samples sample NNS cord-010027-r0tl01kq 1340 14 . . . cord-010027-r0tl01kq 1341 1 This this DT cord-010027-r0tl01kq 1341 2 restricts restrict VBZ cord-010027-r0tl01kq 1341 3 researchers researcher NNS cord-010027-r0tl01kq 1341 4 to to IN cord-010027-r0tl01kq 1341 5 predominantly predominantly RB cord-010027-r0tl01kq 1341 6 prospective prospective JJ cord-010027-r0tl01kq 1341 7 study study NN cord-010027-r0tl01kq 1341 8 designs design NNS cord-010027-r0tl01kq 1341 9 . . . cord-010027-r0tl01kq 1342 1 One one CD cord-010027-r0tl01kq 1342 2 potential potential JJ cord-010027-r0tl01kq 1342 3 method method NN cord-010027-r0tl01kq 1342 4 for for IN cord-010027-r0tl01kq 1342 5 rapidly rapidly RB cord-010027-r0tl01kq 1342 6 increasing increase VBG cord-010027-r0tl01kq 1342 7 and and CC cord-010027-r0tl01kq 1342 8 diversifying diversify VBG cord-010027-r0tl01kq 1342 9 research research NN cord-010027-r0tl01kq 1342 10 is be VBZ cord-010027-r0tl01kq 1342 11 the the DT cord-010027-r0tl01kq 1342 12 retrospective retrospective JJ cord-010027-r0tl01kq 1342 13 study study NN cord-010027-r0tl01kq 1342 14 of of IN cord-010027-r0tl01kq 1342 15 FFPE FFPE NNP cord-010027-r0tl01kq 1342 16 material material NN cord-010027-r0tl01kq 1342 17 . . . cord-010027-r0tl01kq 1343 1 We -PRON- PRP cord-010027-r0tl01kq 1343 2 aimed aim VBD cord-010027-r0tl01kq 1343 3 to to TO cord-010027-r0tl01kq 1343 4 investigate investigate VB cord-010027-r0tl01kq 1343 5 the the DT cord-010027-r0tl01kq 1343 6 feasibility feasibility NN cord-010027-r0tl01kq 1343 7 of of IN cord-010027-r0tl01kq 1343 8 typing type VBG cord-010027-r0tl01kq 1343 9 the the DT cord-010027-r0tl01kq 1343 10 microbiome microbiome NN cord-010027-r0tl01kq 1343 11 in in IN cord-010027-r0tl01kq 1343 12 FFPE FFPE NNP cord-010027-r0tl01kq 1343 13 faecal faecal JJ cord-010027-r0tl01kq 1343 14 samples sample NNS cord-010027-r0tl01kq 1343 15 using use VBG cord-010027-r0tl01kq 1343 16 next next JJ cord-010027-r0tl01kq 1343 17 generation generation NN cord-010027-r0tl01kq 1343 18 sequencing sequencing NN cord-010027-r0tl01kq 1343 19 ( ( -LRB- cord-010027-r0tl01kq 1343 20 NGS NGS NNP cord-010027-r0tl01kq 1343 21 ) ) -RRB- cord-010027-r0tl01kq 1343 22 technology technology NN cord-010027-r0tl01kq 1343 23 . . . cord-010027-r0tl01kq 1344 1 Methods method NNS cord-010027-r0tl01kq 1344 2 : : : cord-010027-r0tl01kq 1345 1 Material material NN cord-010027-r0tl01kq 1345 2 from from IN cord-010027-r0tl01kq 1345 3 six six CD cord-010027-r0tl01kq 1345 4 faecal faecal JJ cord-010027-r0tl01kq 1345 5 samples sample NNS cord-010027-r0tl01kq 1345 6 was be VBD cord-010027-r0tl01kq 1345 7 divided divide VBN cord-010027-r0tl01kq 1345 8 and and CC cord-010027-r0tl01kq 1345 9 stored store VBN cord-010027-r0tl01kq 1345 10 as as IN cord-010027-r0tl01kq 1345 11 frozen frozen JJ cord-010027-r0tl01kq 1345 12 or or CC cord-010027-r0tl01kq 1345 13 fixed fix VBN cord-010027-r0tl01kq 1345 14 and and CC cord-010027-r0tl01kq 1345 15 paraffin paraffin NN cord-010027-r0tl01kq 1345 16 embedded embed VBN cord-010027-r0tl01kq 1345 17 creating create VBG cord-010027-r0tl01kq 1345 18 two two CD cord-010027-r0tl01kq 1345 19 matched match VBN cord-010027-r0tl01kq 1345 20 sub sub NN cord-010027-r0tl01kq 1345 21 - - NNS cord-010027-r0tl01kq 1345 22 groups group NNS cord-010027-r0tl01kq 1345 23 . . . cord-010027-r0tl01kq 1346 1 To to TO cord-010027-r0tl01kq 1346 2 assess assess VB cord-010027-r0tl01kq 1346 3 assay assay NN cord-010027-r0tl01kq 1346 4 sensitivity sensitivity NN cord-010027-r0tl01kq 1346 5 one one CD cord-010027-r0tl01kq 1346 6 sample sample NN cord-010027-r0tl01kq 1346 7 was be VBD cord-010027-r0tl01kq 1346 8 diluted dilute VBN cord-010027-r0tl01kq 1346 9 to to IN cord-010027-r0tl01kq 1346 10 eight eight CD cord-010027-r0tl01kq 1346 11 different different JJ cord-010027-r0tl01kq 1346 12 concentrations concentration NNS cord-010027-r0tl01kq 1346 13 before before IN cord-010027-r0tl01kq 1346 14 fixing fix VBG cord-010027-r0tl01kq 1346 15 and and CC cord-010027-r0tl01kq 1346 16 embedding embedding NN cord-010027-r0tl01kq 1346 17 . . . cord-010027-r0tl01kq 1347 1 The the DT cord-010027-r0tl01kq 1347 2 V4 V4 NNP cord-010027-r0tl01kq 1347 3 and and CC cord-010027-r0tl01kq 1347 4 V6 v6 NN cord-010027-r0tl01kq 1347 5 regions region NNS cord-010027-r0tl01kq 1347 6 of of IN cord-010027-r0tl01kq 1347 7 the the DT cord-010027-r0tl01kq 1347 8 16s 16s NNPS cord-010027-r0tl01kq 1347 9 rRNA rrna NN cord-010027-r0tl01kq 1347 10 gene gene NN cord-010027-r0tl01kq 1347 11 were be VBD cord-010027-r0tl01kq 1347 12 amplified amplify VBN cord-010027-r0tl01kq 1347 13 . . . cord-010027-r0tl01kq 1348 1 Primer primer NN cord-010027-r0tl01kq 1348 2 pairs pair NNS cord-010027-r0tl01kq 1348 3 created create VBD cord-010027-r0tl01kq 1348 4 approximately approximately RB cord-010027-r0tl01kq 1348 5 240bp 240bp NNP cord-010027-r0tl01kq 1348 6 and and CC cord-010027-r0tl01kq 1348 7 98bp 98bp JJ cord-010027-r0tl01kq 1348 8 targets target NNS cord-010027-r0tl01kq 1348 9 in in IN cord-010027-r0tl01kq 1348 10 E.coli e.coli NN cord-010027-r0tl01kq 1348 11 respectively respectively RB cord-010027-r0tl01kq 1348 12 . . . cord-010027-r0tl01kq 1349 1 PCR PCR NNP cord-010027-r0tl01kq 1349 2 products product NNS cord-010027-r0tl01kq 1349 3 were be VBD cord-010027-r0tl01kq 1349 4 multiplexed multiplexe VBN cord-010027-r0tl01kq 1349 5 and and CC cord-010027-r0tl01kq 1349 6 sequenced sequence VBN cord-010027-r0tl01kq 1349 7 on on IN cord-010027-r0tl01kq 1349 8 an an DT cord-010027-r0tl01kq 1349 9 Illumina Illumina NNP cord-010027-r0tl01kq 1349 10 MiSeq MiSeq NNP cord-010027-r0tl01kq 1349 11 . . . cord-010027-r0tl01kq 1350 1 QIIME QIIME NNP cord-010027-r0tl01kq 1350 2 software software NN cord-010027-r0tl01kq 1350 3 was be VBD cord-010027-r0tl01kq 1350 4 used use VBN cord-010027-r0tl01kq 1350 5 for for IN cord-010027-r0tl01kq 1350 6 analysis analysis NN cord-010027-r0tl01kq 1350 7 . . . cord-010027-r0tl01kq 1351 1 Results result NNS cord-010027-r0tl01kq 1351 2 : : : cord-010027-r0tl01kq 1351 3 Analysis analysis NN cord-010027-r0tl01kq 1351 4 of of IN cord-010027-r0tl01kq 1351 5 alpha alpha NN cord-010027-r0tl01kq 1352 1 ( ( -LRB- cord-010027-r0tl01kq 1352 2 within within IN cord-010027-r0tl01kq 1352 3 sample sample NN cord-010027-r0tl01kq 1352 4 ) ) -RRB- cord-010027-r0tl01kq 1352 5 diversity diversity NN cord-010027-r0tl01kq 1352 6 showed show VBD cord-010027-r0tl01kq 1352 7 a a DT cord-010027-r0tl01kq 1352 8 significant significant JJ cord-010027-r0tl01kq 1352 9 difference difference NN cord-010027-r0tl01kq 1352 10 between between IN cord-010027-r0tl01kq 1352 11 sub sub NN cord-010027-r0tl01kq 1352 12 - - NNS cord-010027-r0tl01kq 1352 13 groups group NNS cord-010027-r0tl01kq 1352 14 when when WRB cord-010027-r0tl01kq 1352 15 targeting target VBG cord-010027-r0tl01kq 1352 16 V4 v4 NN cord-010027-r0tl01kq 1352 17 ( ( -LRB- cord-010027-r0tl01kq 1352 18 p=0.05 p=0.05 NNP cord-010027-r0tl01kq 1352 19 ) ) -RRB- cord-010027-r0tl01kq 1352 20 but but CC cord-010027-r0tl01kq 1352 21 not not RB cord-010027-r0tl01kq 1352 22 V6 V6 NNP cord-010027-r0tl01kq 1352 23 . . . cord-010027-r0tl01kq 1353 1 Analysis analysis NN cord-010027-r0tl01kq 1353 2 of of IN cord-010027-r0tl01kq 1353 3 beta beta NN cord-010027-r0tl01kq 1353 4 ( ( -LRB- cord-010027-r0tl01kq 1353 5 between between IN cord-010027-r0tl01kq 1353 6 sample sample NN cord-010027-r0tl01kq 1353 7 ) ) -RRB- cord-010027-r0tl01kq 1353 8 diversity diversity NN cord-010027-r0tl01kq 1353 9 showed show VBD cord-010027-r0tl01kq 1353 10 a a DT cord-010027-r0tl01kq 1353 11 significant significant JJ cord-010027-r0tl01kq 1353 12 difference difference NN cord-010027-r0tl01kq 1353 13 between between IN cord-010027-r0tl01kq 1353 14 sub sub NN cord-010027-r0tl01kq 1353 15 - - NNS cord-010027-r0tl01kq 1353 16 groups group NNS cord-010027-r0tl01kq 1353 17 when when WRB cord-010027-r0tl01kq 1353 18 targeting target VBG cord-010027-r0tl01kq 1353 19 V4 v4 NN cord-010027-r0tl01kq 1353 20 ( ( -LRB- cord-010027-r0tl01kq 1353 21 p=0.01 p=0.01 NNP cord-010027-r0tl01kq 1353 22 ) ) -RRB- cord-010027-r0tl01kq 1353 23 while while IN cord-010027-r0tl01kq 1353 24 the the DT cord-010027-r0tl01kq 1353 25 V6 V6 NNP cord-010027-r0tl01kq 1353 26 region region NN cord-010027-r0tl01kq 1353 27 showed show VBD cord-010027-r0tl01kq 1353 28 a a DT cord-010027-r0tl01kq 1353 29 reduced reduce VBN cord-010027-r0tl01kq 1353 30 , , , cord-010027-r0tl01kq 1353 31 but but CC cord-010027-r0tl01kq 1353 32 still still RB cord-010027-r0tl01kq 1353 33 significant significant JJ cord-010027-r0tl01kq 1353 34 ( ( -LRB- cord-010027-r0tl01kq 1353 35 p=0.02 p=0.02 NN cord-010027-r0tl01kq 1353 36 ) ) -RRB- cord-010027-r0tl01kq 1353 37 difference difference NN cord-010027-r0tl01kq 1353 38 . . . cord-010027-r0tl01kq 1354 1 The the DT cord-010027-r0tl01kq 1354 2 sensitivity sensitivity NN cord-010027-r0tl01kq 1354 3 assay assay NN cord-010027-r0tl01kq 1354 4 showed show VBD cord-010027-r0tl01kq 1354 5 comparable comparable JJ cord-010027-r0tl01kq 1354 6 results result NNS cord-010027-r0tl01kq 1354 7 down down RB cord-010027-r0tl01kq 1354 8 to to IN cord-010027-r0tl01kq 1354 9 0.5 0.5 CD cord-010027-r0tl01kq 1354 10 % % NN cord-010027-r0tl01kq 1354 11 concentration concentration NN cord-010027-r0tl01kq 1354 12 levels level NNS cord-010027-r0tl01kq 1354 13 . . . cord-010027-r0tl01kq 1355 1 Conclusion conclusion NN cord-010027-r0tl01kq 1355 2 : : : cord-010027-r0tl01kq 1356 1 To to IN cord-010027-r0tl01kq 1356 2 our -PRON- PRP$ cord-010027-r0tl01kq 1356 3 knowledge knowledge NN cord-010027-r0tl01kq 1356 4 this this DT cord-010027-r0tl01kq 1356 5 is be VBZ cord-010027-r0tl01kq 1356 6 the the DT cord-010027-r0tl01kq 1356 7 first first JJ cord-010027-r0tl01kq 1356 8 feasibility feasibility NN cord-010027-r0tl01kq 1356 9 study study NN cord-010027-r0tl01kq 1356 10 generating generate VBG cord-010027-r0tl01kq 1356 11 NGS NGS NNP cord-010027-r0tl01kq 1356 12 data datum NNS cord-010027-r0tl01kq 1356 13 on on IN cord-010027-r0tl01kq 1356 14 the the DT cord-010027-r0tl01kq 1356 15 microbiome microbiome NN cord-010027-r0tl01kq 1356 16 from from IN cord-010027-r0tl01kq 1356 17 FFPE FFPE NNP cord-010027-r0tl01kq 1356 18 faecal faecal JJ cord-010027-r0tl01kq 1356 19 material material NN cord-010027-r0tl01kq 1356 20 . . . cord-010027-r0tl01kq 1357 1 Variation variation NN cord-010027-r0tl01kq 1357 2 between between IN cord-010027-r0tl01kq 1357 3 matched match VBN cord-010027-r0tl01kq 1357 4 frozen frozen JJ cord-010027-r0tl01kq 1357 5 and and CC cord-010027-r0tl01kq 1357 6 FFPE FFPE NNP cord-010027-r0tl01kq 1357 7 faecal faecal JJ cord-010027-r0tl01kq 1357 8 material material NN cord-010027-r0tl01kq 1357 9 was be VBD cord-010027-r0tl01kq 1357 10 less less JJR cord-010027-r0tl01kq 1357 11 when when WRB cord-010027-r0tl01kq 1357 12 targeting target VBG cord-010027-r0tl01kq 1357 13 V6 v6 NN cord-010027-r0tl01kq 1357 14 compared compare VBN cord-010027-r0tl01kq 1357 15 to to IN cord-010027-r0tl01kq 1357 16 V4 V4 NNP cord-010027-r0tl01kq 1357 17 . . . cord-010027-r0tl01kq 1358 1 We -PRON- PRP cord-010027-r0tl01kq 1358 2 hypothesise hypothesise VBP cord-010027-r0tl01kq 1358 3 this this DT cord-010027-r0tl01kq 1358 4 may may MD cord-010027-r0tl01kq 1358 5 be be VB cord-010027-r0tl01kq 1358 6 due due JJ cord-010027-r0tl01kq 1358 7 to to IN cord-010027-r0tl01kq 1358 8 the the DT cord-010027-r0tl01kq 1358 9 shorter short JJR cord-010027-r0tl01kq 1358 10 amplicon amplicon NN cord-010027-r0tl01kq 1358 11 undergoing undergo VBG cord-010027-r0tl01kq 1358 12 less less JJR cord-010027-r0tl01kq 1358 13 DNA dna NN cord-010027-r0tl01kq 1358 14 fragmentation fragmentation NN cord-010027-r0tl01kq 1358 15 in in IN cord-010027-r0tl01kq 1358 16 FFPE FFPE NNP cord-010027-r0tl01kq 1358 17 material material NN cord-010027-r0tl01kq 1358 18 . . . cord-010027-r0tl01kq 1359 1 There there EX cord-010027-r0tl01kq 1359 2 are be VBP cord-010027-r0tl01kq 1359 3 several several JJ cord-010027-r0tl01kq 1359 4 platforms platform NNS cord-010027-r0tl01kq 1359 5 available available JJ cord-010027-r0tl01kq 1359 6 for for IN cord-010027-r0tl01kq 1359 7 DNA dna NN cord-010027-r0tl01kq 1359 8 mutation mutation NN cord-010027-r0tl01kq 1359 9 detection detection NN cord-010027-r0tl01kq 1359 10 in in IN cord-010027-r0tl01kq 1359 11 formalin formalin NN cord-010027-r0tl01kq 1359 12 - - HYPH cord-010027-r0tl01kq 1359 13 fixed fix VBN cord-010027-r0tl01kq 1359 14 paraffin paraffin NN cord-010027-r0tl01kq 1359 15 - - HYPH cord-010027-r0tl01kq 1359 16 embedded embed VBN cord-010027-r0tl01kq 1359 17 ( ( -LRB- cord-010027-r0tl01kq 1359 18 FFPE FFPE NNP cord-010027-r0tl01kq 1359 19 ) ) -RRB- cord-010027-r0tl01kq 1359 20 material material NN cord-010027-r0tl01kq 1359 21 , , , cord-010027-r0tl01kq 1359 22 all all DT cord-010027-r0tl01kq 1359 23 with with IN cord-010027-r0tl01kq 1359 24 their -PRON- PRP$ cord-010027-r0tl01kq 1359 25 relative relative JJ cord-010027-r0tl01kq 1359 26 strengths strength NNS cord-010027-r0tl01kq 1359 27 and and CC cord-010027-r0tl01kq 1359 28 weaknesses weakness NNS cord-010027-r0tl01kq 1359 29 . . . cord-010027-r0tl01kq 1360 1 We -PRON- PRP cord-010027-r0tl01kq 1360 2 investigated investigate VBD cord-010027-r0tl01kq 1360 3 the the DT cord-010027-r0tl01kq 1360 4 OncoScan OncoScan NNP cord-010027-r0tl01kq 1360 5 ® ® POS cord-010027-r0tl01kq 1360 6 FFPE FFPE NNP cord-010027-r0tl01kq 1360 7 Assay Assay NNP cord-010027-r0tl01kq 1360 8 Kit kit NN cord-010027-r0tl01kq 1360 9 ( ( -LRB- cord-010027-r0tl01kq 1360 10 OncoScan OncoScan NNP cord-010027-r0tl01kq 1360 11 ) ) -RRB- cord-010027-r0tl01kq 1360 12 in in IN cord-010027-r0tl01kq 1360 13 comparison comparison NN cord-010027-r0tl01kq 1360 14 to to IN cord-010027-r0tl01kq 1360 15 pyrosequencing pyrosequence VBG cord-010027-r0tl01kq 1360 16 in in IN cord-010027-r0tl01kq 1360 17 patients patient NNS cord-010027-r0tl01kq 1360 18 with with IN cord-010027-r0tl01kq 1360 19 operable operable JJ cord-010027-r0tl01kq 1360 20 colon colon NN cord-010027-r0tl01kq 1360 21 cancer cancer NN cord-010027-r0tl01kq 1360 22 recruited recruit VBN cord-010027-r0tl01kq 1360 23 to to IN cord-010027-r0tl01kq 1360 24 the the DT cord-010027-r0tl01kq 1360 25 phase phase NN cord-010027-r0tl01kq 1360 26 II ii CD cord-010027-r0tl01kq 1360 27 component component NN cord-010027-r0tl01kq 1360 28 of of IN cord-010027-r0tl01kq 1360 29 the the DT cord-010027-r0tl01kq 1360 30 NCRI NCRI NNP cord-010027-r0tl01kq 1360 31 FOxTROT FOxTROT NNP cord-010027-r0tl01kq 1360 32 trial trial NN cord-010027-r0tl01kq 1360 33 of of IN cord-010027-r0tl01kq 1360 34 pre pre JJ cord-010027-r0tl01kq 1360 35 - - JJ cord-010027-r0tl01kq 1360 36 operative operative JJ cord-010027-r0tl01kq 1360 37 vs. vs. FW cord-010027-r0tl01kq 1360 38 post post JJ cord-010027-r0tl01kq 1360 39 - - JJ cord-010027-r0tl01kq 1360 40 operative operative JJ cord-010027-r0tl01kq 1360 41 chemotherapy chemotherapy NN cord-010027-r0tl01kq 1360 42 . . . cord-010027-r0tl01kq 1361 1 FFPE FFPE NNP cord-010027-r0tl01kq 1361 2 samples sample NNS cord-010027-r0tl01kq 1361 3 of of IN cord-010027-r0tl01kq 1361 4 tumour tumour NN cord-010027-r0tl01kq 1361 5 from from IN cord-010027-r0tl01kq 1361 6 the the DT cord-010027-r0tl01kq 1361 7 resection resection NN cord-010027-r0tl01kq 1361 8 specimens specimen NNS cord-010027-r0tl01kq 1361 9 of of IN cord-010027-r0tl01kq 1361 10 132 132 CD cord-010027-r0tl01kq 1361 11 cases case NNS cord-010027-r0tl01kq 1361 12 were be VBD cord-010027-r0tl01kq 1361 13 tested test VBN cord-010027-r0tl01kq 1361 14 for for IN cord-010027-r0tl01kq 1361 15 KRAS kra NNS cord-010027-r0tl01kq 1361 16 12/13/61 12/13/61 CD cord-010027-r0tl01kq 1361 17 and and CC cord-010027-r0tl01kq 1362 1 BRAF BRAF NNP cord-010027-r0tl01kq 1362 2 V600E V600E NNP cord-010027-r0tl01kq 1362 3 mutations mutation NNS cord-010027-r0tl01kq 1362 4 using use VBG cord-010027-r0tl01kq 1362 5 pyrosequencing pyrosequence VBG cord-010027-r0tl01kq 1362 6 . . . cord-010027-r0tl01kq 1363 1 The the DT cord-010027-r0tl01kq 1363 2 OncoScan OncoScan NNP cord-010027-r0tl01kq 1363 3 assay assay NN cord-010027-r0tl01kq 1363 4 allows allow VBZ cord-010027-r0tl01kq 1363 5 for for IN cord-010027-r0tl01kq 1363 6 the the DT cord-010027-r0tl01kq 1363 7 interrogation interrogation NN cord-010027-r0tl01kq 1363 8 of of IN cord-010027-r0tl01kq 1363 9 74 74 CD cord-010027-r0tl01kq 1363 10 mutations mutation NNS cord-010027-r0tl01kq 1363 11 across across IN cord-010027-r0tl01kq 1363 12 nine nine CD cord-010027-r0tl01kq 1363 13 genes gene NNS cord-010027-r0tl01kq 1363 14 . . . cord-010027-r0tl01kq 1364 1 Pre pre JJ cord-010027-r0tl01kq 1364 2 - - JJ cord-010027-r0tl01kq 1364 3 extracted extract VBN cord-010027-r0tl01kq 1364 4 DNA DNA NNP cord-010027-r0tl01kq 1364 5 was be VBD cord-010027-r0tl01kq 1364 6 analysed analyse VBN cord-010027-r0tl01kq 1364 7 on on IN cord-010027-r0tl01kq 1364 8 the the DT cord-010027-r0tl01kq 1364 9 OncoScan OncoScan NNP cord-010027-r0tl01kq 1364 10 assay assay NN cord-010027-r0tl01kq 1364 11 and and CC cord-010027-r0tl01kq 1364 12 quality quality NN cord-010027-r0tl01kq 1364 13 control control NN cord-010027-r0tl01kq 1364 14 ( ( -LRB- cord-010027-r0tl01kq 1364 15 QC QC NNP cord-010027-r0tl01kq 1364 16 ) ) -RRB- cord-010027-r0tl01kq 1364 17 scores score NNS cord-010027-r0tl01kq 1364 18 generated generate VBN cord-010027-r0tl01kq 1364 19 , , , cord-010027-r0tl01kq 1364 20 indicating indicate VBG cord-010027-r0tl01kq 1364 21 confidence confidence NN cord-010027-r0tl01kq 1364 22 in in IN cord-010027-r0tl01kq 1364 23 mutation mutation NN cord-010027-r0tl01kq 1364 24 calling call VBG cord-010027-r0tl01kq 1364 25 results result NNS cord-010027-r0tl01kq 1364 26 . . . cord-010027-r0tl01kq 1365 1 The the DT cord-010027-r0tl01kq 1365 2 mutational mutational JJ cord-010027-r0tl01kq 1365 3 status status NN cord-010027-r0tl01kq 1365 4 of of IN cord-010027-r0tl01kq 1365 5 all all DT cord-010027-r0tl01kq 1365 6 samples sample NNS cord-010027-r0tl01kq 1365 7 was be VBD cord-010027-r0tl01kq 1365 8 automatically automatically RB cord-010027-r0tl01kq 1365 9 assessed assess VBN cord-010027-r0tl01kq 1365 10 in in IN cord-010027-r0tl01kq 1365 11 the the DT cord-010027-r0tl01kq 1365 12 Affymetrix Affymetrix NNP cord-010027-r0tl01kq 1365 13 SM SM NNP cord-010027-r0tl01kq 1365 14 Viewer Viewer NNP cord-010027-r0tl01kq 1365 15 , , , cord-010027-r0tl01kq 1365 16 and and CC cord-010027-r0tl01kq 1365 17 then then RB cord-010027-r0tl01kq 1365 18 manually manually RB cord-010027-r0tl01kq 1365 19 confirmed confirm VBD cord-010027-r0tl01kq 1365 20 . . . cord-010027-r0tl01kq 1366 1 This this DT cord-010027-r0tl01kq 1366 2 work work NN cord-010027-r0tl01kq 1366 3 is be VBZ cord-010027-r0tl01kq 1366 4 presented present VBN cord-010027-r0tl01kq 1366 5 on on IN cord-010027-r0tl01kq 1366 6 behalf behalf NN cord-010027-r0tl01kq 1366 7 of of IN cord-010027-r0tl01kq 1366 8 the the DT cord-010027-r0tl01kq 1366 9 FOxTROT FOxTROT NNP cord-010027-r0tl01kq 1366 10 Collaborative Collaborative NNP cord-010027-r0tl01kq 1366 11 and and CC cord-010027-r0tl01kq 1366 12 was be VBD cord-010027-r0tl01kq 1366 13 part part NN cord-010027-r0tl01kq 1366 14 funded fund VBN cord-010027-r0tl01kq 1366 15 by by IN cord-010027-r0tl01kq 1366 16 a a DT cord-010027-r0tl01kq 1366 17 PathSoc PathSoc NNP cord-010027-r0tl01kq 1366 18 fellowship fellowship NN cord-010027-r0tl01kq 1366 19 . . . cord-010027-r0tl01kq 1367 1 Out out IN cord-010027-r0tl01kq 1367 2 of of IN cord-010027-r0tl01kq 1367 3 132 132 CD cord-010027-r0tl01kq 1367 4 samples sample NNS cord-010027-r0tl01kq 1367 5 , , , cord-010027-r0tl01kq 1367 6 22 22 CD cord-010027-r0tl01kq 1367 7 failed fail VBD cord-010027-r0tl01kq 1367 8 OncoScan OncoScan NNP cord-010027-r0tl01kq 1367 9 QC QC NNP cord-010027-r0tl01kq 1367 10 thresholds threshold NNS cord-010027-r0tl01kq 1367 11 , , , cord-010027-r0tl01kq 1367 12 however however RB cord-010027-r0tl01kq 1367 13 , , , cord-010027-r0tl01kq 1367 14 only only RB cord-010027-r0tl01kq 1367 15 10 10 CD cord-010027-r0tl01kq 1367 16 of of IN cord-010027-r0tl01kq 1367 17 these these DT cord-010027-r0tl01kq 1367 18 were be VBD cord-010027-r0tl01kq 1367 19 deemed deem VBN cord-010027-r0tl01kq 1367 20 inconclusive inconclusive JJ cord-010027-r0tl01kq 1367 21 by by IN cord-010027-r0tl01kq 1367 22 manual manual JJ cord-010027-r0tl01kq 1367 23 interrogation interrogation NN cord-010027-r0tl01kq 1367 24 . . . cord-010027-r0tl01kq 1368 1 130 130 CD cord-010027-r0tl01kq 1368 2 samples sample NNS cord-010027-r0tl01kq 1368 3 were be VBD cord-010027-r0tl01kq 1368 4 interpretable interpretable JJ cord-010027-r0tl01kq 1368 5 by by IN cord-010027-r0tl01kq 1368 6 pyrosequencing pyrosequence VBG cord-010027-r0tl01kq 1368 7 . . . cord-010027-r0tl01kq 1369 1 Of of IN cord-010027-r0tl01kq 1369 2 the the DT cord-010027-r0tl01kq 1369 3 120 120 CD cord-010027-r0tl01kq 1369 4 samples sample NNS cord-010027-r0tl01kq 1369 5 that that WDT cord-010027-r0tl01kq 1369 6 produced produce VBD cord-010027-r0tl01kq 1369 7 conclusive conclusive JJ cord-010027-r0tl01kq 1369 8 results result NNS cord-010027-r0tl01kq 1369 9 on on IN cord-010027-r0tl01kq 1369 10 both both DT cord-010027-r0tl01kq 1369 11 platforms platform NNS cord-010027-r0tl01kq 1369 12 , , , cord-010027-r0tl01kq 1369 13 the the DT cord-010027-r0tl01kq 1369 14 concordance concordance NN cord-010027-r0tl01kq 1369 15 rate rate NN cord-010027-r0tl01kq 1369 16 was be VBD cord-010027-r0tl01kq 1369 17 very very RB cord-010027-r0tl01kq 1369 18 high high JJ cord-010027-r0tl01kq 1369 19 at at IN cord-010027-r0tl01kq 1369 20 95.8 95.8 CD cord-010027-r0tl01kq 1369 21 % % NN cord-010027-r0tl01kq 1369 22 when when WRB cord-010027-r0tl01kq 1369 23 calling call VBG cord-010027-r0tl01kq 1369 24 a a DT cord-010027-r0tl01kq 1369 25 mutated mutate VBN cord-010027-r0tl01kq 1369 26 versus versus IN cord-010027-r0tl01kq 1369 27 non non JJ cord-010027-r0tl01kq 1369 28 - - JJ cord-010027-r0tl01kq 1369 29 mutated mutated JJ cord-010027-r0tl01kq 1369 30 KRAS KRAS NNP cord-010027-r0tl01kq 1369 31 / / SYM cord-010027-r0tl01kq 1369 32 BRAF BRAF NNP cord-010027-r0tl01kq 1369 33 status status NN cord-010027-r0tl01kq 1369 34 . . . cord-010027-r0tl01kq 1370 1 Mutations mutation NNS cord-010027-r0tl01kq 1370 2 were be VBD cord-010027-r0tl01kq 1370 3 ' ' `` cord-010027-r0tl01kq 1370 4 missed miss VBN cord-010027-r0tl01kq 1370 5 ' ' '' cord-010027-r0tl01kq 1370 6 by by IN cord-010027-r0tl01kq 1370 7 pyrosequencing pyrosequence VBG cord-010027-r0tl01kq 1370 8 in in IN cord-010027-r0tl01kq 1370 9 only only RB cord-010027-r0tl01kq 1370 10 1 1 CD cord-010027-r0tl01kq 1370 11 case case NN cord-010027-r0tl01kq 1370 12 ( ( -LRB- cord-010027-r0tl01kq 1370 13 0.8 0.8 CD cord-010027-r0tl01kq 1370 14 % % NN cord-010027-r0tl01kq 1370 15 ) ) -RRB- cord-010027-r0tl01kq 1370 16 and and CC cord-010027-r0tl01kq 1370 17 by by IN cord-010027-r0tl01kq 1370 18 OncoScan OncoScan NNP cord-010027-r0tl01kq 1370 19 in in IN cord-010027-r0tl01kq 1370 20 4 4 CD cord-010027-r0tl01kq 1370 21 cases case NNS cord-010027-r0tl01kq 1370 22 ( ( -LRB- cord-010027-r0tl01kq 1370 23 3.4 3.4 CD cord-010027-r0tl01kq 1370 24 % % NN cord-010027-r0tl01kq 1370 25 ) ) -RRB- cord-010027-r0tl01kq 1370 26 . . . cord-010027-r0tl01kq 1371 1 In in IN cord-010027-r0tl01kq 1371 2 addition addition NN cord-010027-r0tl01kq 1371 3 , , , cord-010027-r0tl01kq 1371 4 the the DT cord-010027-r0tl01kq 1371 5 OncoScan OncoScan NNP cord-010027-r0tl01kq 1371 6 assay assay NN cord-010027-r0tl01kq 1371 7 provides provide VBZ cord-010027-r0tl01kq 1371 8 mutational mutational JJ cord-010027-r0tl01kq 1371 9 data datum NNS cord-010027-r0tl01kq 1371 10 in in IN cord-010027-r0tl01kq 1371 11 additional additional JJ cord-010027-r0tl01kq 1371 12 genes gene NNS cord-010027-r0tl01kq 1371 13 along along IN cord-010027-r0tl01kq 1371 14 with with IN cord-010027-r0tl01kq 1371 15 copy copy NN cord-010027-r0tl01kq 1371 16 number number NN cord-010027-r0tl01kq 1371 17 ( ( -LRB- cord-010027-r0tl01kq 1371 18 CN CN NNP cord-010027-r0tl01kq 1371 19 ) ) -RRB- cord-010027-r0tl01kq 1371 20 and and CC cord-010027-r0tl01kq 1371 21 loss loss NN cord-010027-r0tl01kq 1371 22 of of IN cord-010027-r0tl01kq 1371 23 heterozygosity heterozygosity NN cord-010027-r0tl01kq 1371 24 ( ( -LRB- cord-010027-r0tl01kq 1371 25 LOH LOH NNP cord-010027-r0tl01kq 1371 26 ) ) -RRB- cord-010027-r0tl01kq 1371 27 information information NN cord-010027-r0tl01kq 1371 28 . . . cord-010027-r0tl01kq 1372 1 In in IN cord-010027-r0tl01kq 1372 2 patients patient NNS cord-010027-r0tl01kq 1372 3 with with IN cord-010027-r0tl01kq 1372 4 colon colon NN cord-010027-r0tl01kq 1372 5 cancer cancer NN cord-010027-r0tl01kq 1372 6 recruited recruit VBN cord-010027-r0tl01kq 1372 7 to to IN cord-010027-r0tl01kq 1372 8 the the DT cord-010027-r0tl01kq 1372 9 NCRI NCRI NNP cord-010027-r0tl01kq 1372 10 FOxTROT FOxTROT NNP cord-010027-r0tl01kq 1372 11 trial trial NN cord-010027-r0tl01kq 1372 12 , , , cord-010027-r0tl01kq 1372 13 the the DT cord-010027-r0tl01kq 1372 14 OncoScan OncoScan NNP cord-010027-r0tl01kq 1372 15 FFPE FFPE NNP cord-010027-r0tl01kq 1372 16 assay assay NN cord-010027-r0tl01kq 1372 17 shows show VBZ cord-010027-r0tl01kq 1372 18 good good JJ cord-010027-r0tl01kq 1372 19 correlation correlation NN cord-010027-r0tl01kq 1372 20 with with IN cord-010027-r0tl01kq 1372 21 pyrosequencing pyrosequencing NN cord-010027-r0tl01kq 1372 22 when when WRB cord-010027-r0tl01kq 1372 23 determining determine VBG cord-010027-r0tl01kq 1372 24 the the DT cord-010027-r0tl01kq 1372 25 mutational mutational JJ cord-010027-r0tl01kq 1372 26 status status NN cord-010027-r0tl01kq 1372 27 of of IN cord-010027-r0tl01kq 1372 28 KRAS KRAS NNP cord-010027-r0tl01kq 1372 29 / / SYM cord-010027-r0tl01kq 1372 30 BRAF BRAF NNP cord-010027-r0tl01kq 1372 31 . . . cord-010027-r0tl01kq 1373 1 Although although IN cord-010027-r0tl01kq 1373 2 pyrosequencing pyrosequencing NN cord-010027-r0tl01kq 1373 3 has have VBZ cord-010027-r0tl01kq 1373 4 a a DT cord-010027-r0tl01kq 1373 5 slightly slightly RB cord-010027-r0tl01kq 1373 6 lower low JJR cord-010027-r0tl01kq 1373 7 failure failure NN cord-010027-r0tl01kq 1373 8 rate rate NN cord-010027-r0tl01kq 1373 9 , , , cord-010027-r0tl01kq 1373 10 the the DT cord-010027-r0tl01kq 1373 11 OncoScan OncoScan NNP cord-010027-r0tl01kq 1373 12 has have VBZ cord-010027-r0tl01kq 1373 13 the the DT cord-010027-r0tl01kq 1373 14 added add VBN cord-010027-r0tl01kq 1373 15 advantage advantage NN cord-010027-r0tl01kq 1373 16 of of IN cord-010027-r0tl01kq 1373 17 targeting target VBG cord-010027-r0tl01kq 1373 18 more more JJR cord-010027-r0tl01kq 1373 19 mutations mutation NNS cord-010027-r0tl01kq 1373 20 , , , cord-010027-r0tl01kq 1373 21 producing produce VBG cord-010027-r0tl01kq 1373 22 genome genome NN cord-010027-r0tl01kq 1373 23 wide wide JJ cord-010027-r0tl01kq 1373 24 CN cn NN cord-010027-r0tl01kq 1373 25 , , , cord-010027-r0tl01kq 1373 26 and and CC cord-010027-r0tl01kq 1373 27 LOH LOH NNP cord-010027-r0tl01kq 1373 28 information information NN cord-010027-r0tl01kq 1373 29 in in IN cord-010027-r0tl01kq 1373 30 one one CD cord-010027-r0tl01kq 1373 31 assay assay NN cord-010027-r0tl01kq 1373 32 . . . cord-010027-r0tl01kq 1374 1 Excellent excellent JJ cord-010027-r0tl01kq 1374 2 anatomical anatomical JJ cord-010027-r0tl01kq 1374 3 knowledge knowledge NN cord-010027-r0tl01kq 1374 4 of of IN cord-010027-r0tl01kq 1374 5 the the DT cord-010027-r0tl01kq 1374 6 rectum rectum NN cord-010027-r0tl01kq 1374 7 and and CC cord-010027-r0tl01kq 1374 8 surrounding surround VBG cord-010027-r0tl01kq 1374 9 structures structure NNS cord-010027-r0tl01kq 1374 10 is be VBZ cord-010027-r0tl01kq 1374 11 essential essential JJ cord-010027-r0tl01kq 1374 12 for for IN cord-010027-r0tl01kq 1374 13 total total JJ cord-010027-r0tl01kq 1374 14 mesorectal mesorectal JJ cord-010027-r0tl01kq 1374 15 excision excision NN cord-010027-r0tl01kq 1374 16 ( ( -LRB- cord-010027-r0tl01kq 1374 17 TME TME NNP cord-010027-r0tl01kq 1374 18 ) ) -RRB- cord-010027-r0tl01kq 1374 19 . . . cord-010027-r0tl01kq 1375 1 Denonvilliers Denonvilliers NNP cord-010027-r0tl01kq 1375 2 ' ' POS cord-010027-r0tl01kq 1375 3 fascia fascia NN cord-010027-r0tl01kq 1375 4 ( ( -LRB- cord-010027-r0tl01kq 1375 5 DVF DVF NNP cord-010027-r0tl01kq 1375 6 ) ) -RRB- cord-010027-r0tl01kq 1375 7 has have VBZ cord-010027-r0tl01kq 1375 8 been be VBN cord-010027-r0tl01kq 1375 9 frequently frequently RB cord-010027-r0tl01kq 1375 10 studied study VBN cord-010027-r0tl01kq 1375 11 , , , cord-010027-r0tl01kq 1375 12 though though IN cord-010027-r0tl01kq 1375 13 the the DT cord-010027-r0tl01kq 1375 14 optimal optimal JJ cord-010027-r0tl01kq 1375 15 anterior anterior JJ cord-010027-r0tl01kq 1375 16 plane plane NN cord-010027-r0tl01kq 1375 17 in in IN cord-010027-r0tl01kq 1375 18 TME TME NNP cord-010027-r0tl01kq 1375 19 is be VBZ cord-010027-r0tl01kq 1375 20 still still RB cord-010027-r0tl01kq 1375 21 disputed dispute VBN cord-010027-r0tl01kq 1375 22 . . . cord-010027-r0tl01kq 1376 1 The the DT cord-010027-r0tl01kq 1376 2 relationship relationship NN cord-010027-r0tl01kq 1376 3 of of IN cord-010027-r0tl01kq 1376 4 the the DT cord-010027-r0tl01kq 1376 5 lateral lateral JJ cord-010027-r0tl01kq 1376 6 edge edge NN cord-010027-r0tl01kq 1376 7 of of IN cord-010027-r0tl01kq 1376 8 DVF DVF NNP cord-010027-r0tl01kq 1376 9 to to IN cord-010027-r0tl01kq 1376 10 the the DT cord-010027-r0tl01kq 1376 11 autonomic autonomic JJ cord-010027-r0tl01kq 1376 12 nerves nerve NNS cord-010027-r0tl01kq 1376 13 is be VBZ cord-010027-r0tl01kq 1376 14 also also RB cord-010027-r0tl01kq 1376 15 unclear unclear JJ cord-010027-r0tl01kq 1376 16 . . . cord-010027-r0tl01kq 1377 1 We -PRON- PRP cord-010027-r0tl01kq 1377 2 studied study VBD cord-010027-r0tl01kq 1377 3 whole whole JJ cord-010027-r0tl01kq 1377 4 - - HYPH cord-010027-r0tl01kq 1377 5 mount mount NN cord-010027-r0tl01kq 1377 6 microscopic microscopic JJ cord-010027-r0tl01kq 1377 7 sections section NNS cord-010027-r0tl01kq 1377 8 of of IN cord-010027-r0tl01kq 1377 9 en en JJ cord-010027-r0tl01kq 1377 10 - - HYPH cord-010027-r0tl01kq 1377 11 bloc bloc NNP cord-010027-r0tl01kq 1377 12 cadaveric cadaveric JJ cord-010027-r0tl01kq 1377 13 pelvic pelvic JJ cord-010027-r0tl01kq 1377 14 exenteration exenteration NN cord-010027-r0tl01kq 1377 15 specimens specimen NNS cord-010027-r0tl01kq 1377 16 and and CC cord-010027-r0tl01kq 1377 17 describe describe VB cord-010027-r0tl01kq 1377 18 implications implication NNS cord-010027-r0tl01kq 1377 19 for for IN cord-010027-r0tl01kq 1377 20 TME TME NNP cord-010027-r0tl01kq 1377 21 . . . cord-010027-r0tl01kq 1378 1 Four four CD cord-010027-r0tl01kq 1378 2 human human JJ cord-010027-r0tl01kq 1378 3 adult adult NN cord-010027-r0tl01kq 1378 4 cadaveric cadaveric JJ cord-010027-r0tl01kq 1378 5 specimens specimen NNS cord-010027-r0tl01kq 1378 6 ( ( -LRB- cord-010027-r0tl01kq 1378 7 two two CD cord-010027-r0tl01kq 1378 8 males male NNS cord-010027-r0tl01kq 1378 9 , , , cord-010027-r0tl01kq 1378 10 two two CD cord-010027-r0tl01kq 1378 11 females female NNS cord-010027-r0tl01kq 1378 12 ) ) -RRB- cord-010027-r0tl01kq 1378 13 were be VBD cord-010027-r0tl01kq 1378 14 obtained obtain VBN cord-010027-r0tl01kq 1378 15 from from IN cord-010027-r0tl01kq 1378 16 the the DT cord-010027-r0tl01kq 1378 17 Leeds Leeds NNP cord-010027-r0tl01kq 1378 18 GIFT GIFT NNP cord-010027-r0tl01kq 1378 19 Research Research NNP cord-010027-r0tl01kq 1378 20 Tissue Tissue NNP cord-010027-r0tl01kq 1378 21 Programme Programme NNP cord-010027-r0tl01kq 1378 22 . . . cord-010027-r0tl01kq 1379 1 Paraffin paraffin NN cord-010027-r0tl01kq 1379 2 - - HYPH cord-010027-r0tl01kq 1379 3 embedded embed VBN cord-010027-r0tl01kq 1379 4 mega mega NNS cord-010027-r0tl01kq 1379 5 - - NNS cord-010027-r0tl01kq 1379 6 blocks block NNS cord-010027-r0tl01kq 1379 7 were be VBD cord-010027-r0tl01kq 1379 8 produced produce VBN cord-010027-r0tl01kq 1379 9 and and CC cord-010027-r0tl01kq 1379 10 serially serially RB cord-010027-r0tl01kq 1379 11 sectioned section VBN cord-010027-r0tl01kq 1379 12 at at IN cord-010027-r0tl01kq 1379 13 50 50 CD cord-010027-r0tl01kq 1379 14 and and CC cord-010027-r0tl01kq 1379 15 250 250 CD cord-010027-r0tl01kq 1379 16 µm µm CD cord-010027-r0tl01kq 1379 17 intervals interval NNS cord-010027-r0tl01kq 1379 18 . . . cord-010027-r0tl01kq 1380 1 Sections section NNS cord-010027-r0tl01kq 1380 2 were be VBD cord-010027-r0tl01kq 1380 3 stained stain VBN cord-010027-r0tl01kq 1380 4 with with IN cord-010027-r0tl01kq 1380 5 haematoxylin haematoxylin NNP cord-010027-r0tl01kq 1380 6 & & CC cord-010027-r0tl01kq 1380 7 eosin eosin NNP cord-010027-r0tl01kq 1380 8 , , , cord-010027-r0tl01kq 1380 9 Masson Masson NNP cord-010027-r0tl01kq 1380 10 's 's POS cord-010027-r0tl01kq 1380 11 trichrome trichrome JJ cord-010027-r0tl01kq 1380 12 and and CC cord-010027-r0tl01kq 1380 13 Millers Millers NNP cord-010027-r0tl01kq 1380 14 ' ' POS cord-010027-r0tl01kq 1380 15 elastin elastin NN cord-010027-r0tl01kq 1380 16 . . . cord-010027-r0tl01kq 1381 1 Additionally additionally RB cord-010027-r0tl01kq 1381 2 , , , cord-010027-r0tl01kq 1381 3 a a DT cord-010027-r0tl01kq 1381 4 developmental developmental JJ cord-010027-r0tl01kq 1381 5 series series NN cord-010027-r0tl01kq 1381 6 of of IN cord-010027-r0tl01kq 1381 7 eleven eleven CD cord-010027-r0tl01kq 1381 8 human human JJ cord-010027-r0tl01kq 1381 9 fetal fetal JJ cord-010027-r0tl01kq 1381 10 pelvic pelvic JJ cord-010027-r0tl01kq 1381 11 specimens specimen NNS cord-010027-r0tl01kq 1381 12 ( ( -LRB- cord-010027-r0tl01kq 1381 13 embryonic embryonic JJ cord-010027-r0tl01kq 1381 14 age age NN cord-010027-r0tl01kq 1381 15 of of IN cord-010027-r0tl01kq 1381 16 9 9 CD cord-010027-r0tl01kq 1381 17 - - SYM cord-010027-r0tl01kq 1381 18 20 20 CD cord-010027-r0tl01kq 1381 19 weeks week NNS cord-010027-r0tl01kq 1381 20 ) ) -RRB- cord-010027-r0tl01kq 1381 21 were be VBD cord-010027-r0tl01kq 1381 22 studied study VBN cord-010027-r0tl01kq 1381 23 . . . cord-010027-r0tl01kq 1382 1 DVF DVF NNP cord-010027-r0tl01kq 1382 2 consisted consist VBD cord-010027-r0tl01kq 1382 3 of of IN cord-010027-r0tl01kq 1382 4 multiple multiple JJ cord-010027-r0tl01kq 1382 5 fascial fascial JJ cord-010027-r0tl01kq 1382 6 condensations condensation NNS cord-010027-r0tl01kq 1382 7 of of IN cord-010027-r0tl01kq 1382 8 collagen collagen NN cord-010027-r0tl01kq 1382 9 and and CC cord-010027-r0tl01kq 1382 10 smooth smooth JJ cord-010027-r0tl01kq 1382 11 muscle muscle NN cord-010027-r0tl01kq 1382 12 fibres fibre NNS cord-010027-r0tl01kq 1382 13 and and CC cord-010027-r0tl01kq 1382 14 was be VBD cord-010027-r0tl01kq 1382 15 indistinguishable indistinguishable JJ cord-010027-r0tl01kq 1382 16 from from IN cord-010027-r0tl01kq 1382 17 the the DT cord-010027-r0tl01kq 1382 18 anterior anterior JJ cord-010027-r0tl01kq 1382 19 mesorectal mesorectal JJ cord-010027-r0tl01kq 1382 20 fascia fascia NN cord-010027-r0tl01kq 1382 21 and and CC cord-010027-r0tl01kq 1382 22 the the DT cord-010027-r0tl01kq 1382 23 capsule capsule NN cord-010027-r0tl01kq 1382 24 of of IN cord-010027-r0tl01kq 1382 25 the the DT cord-010027-r0tl01kq 1382 26 prostate prostate NN cord-010027-r0tl01kq 1382 27 or or CC cord-010027-r0tl01kq 1382 28 posterior posterior JJ cord-010027-r0tl01kq 1382 29 vaginal vaginal JJ cord-010027-r0tl01kq 1382 30 wall wall NN cord-010027-r0tl01kq 1382 31 . . . cord-010027-r0tl01kq 1383 1 The the DT cord-010027-r0tl01kq 1383 2 lateral lateral JJ cord-010027-r0tl01kq 1383 3 edges edge NNS cord-010027-r0tl01kq 1383 4 of of IN cord-010027-r0tl01kq 1383 5 DVF DVF NNP cord-010027-r0tl01kq 1383 6 appeared appear VBD cord-010027-r0tl01kq 1383 7 fan fan NN cord-010027-r0tl01kq 1383 8 - - HYPH cord-010027-r0tl01kq 1383 9 shaped shape VBN cord-010027-r0tl01kq 1383 10 , , , cord-010027-r0tl01kq 1383 11 and and CC cord-010027-r0tl01kq 1383 12 the the DT cord-010027-r0tl01kq 1383 13 most most RBS cord-010027-r0tl01kq 1383 14 posterior posterior JJ cord-010027-r0tl01kq 1383 15 part part NN cord-010027-r0tl01kq 1383 16 was be VBD cord-010027-r0tl01kq 1383 17 continuous continuous JJ cord-010027-r0tl01kq 1383 18 with with IN cord-010027-r0tl01kq 1383 19 the the DT cord-010027-r0tl01kq 1383 20 mesorectal mesorectal JJ cord-010027-r0tl01kq 1383 21 fascia fascia NN cord-010027-r0tl01kq 1383 22 . . . cord-010027-r0tl01kq 1384 1 Peri peri JJ cord-010027-r0tl01kq 1384 2 - - HYPH cord-010027-r0tl01kq 1384 3 rectal rectal JJ cord-010027-r0tl01kq 1384 4 fasciae fascia NNS cord-010027-r0tl01kq 1384 5 were be VBD cord-010027-r0tl01kq 1384 6 not not RB cord-010027-r0tl01kq 1384 7 identified identify VBN cord-010027-r0tl01kq 1384 8 in in IN cord-010027-r0tl01kq 1384 9 fetal fetal JJ cord-010027-r0tl01kq 1384 10 specimens specimen NNS cord-010027-r0tl01kq 1384 11 . . . cord-010027-r0tl01kq 1385 1 DVF DVF NNP cord-010027-r0tl01kq 1385 2 is be VBZ cord-010027-r0tl01kq 1385 3 adherent adherent JJ cord-010027-r0tl01kq 1385 4 to to IN cord-010027-r0tl01kq 1385 5 and and CC cord-010027-r0tl01kq 1385 6 continuous continuous JJ cord-010027-r0tl01kq 1385 7 with with IN cord-010027-r0tl01kq 1385 8 the the DT cord-010027-r0tl01kq 1385 9 mesorectal mesorectal JJ cord-010027-r0tl01kq 1385 10 fascia fascia NN cord-010027-r0tl01kq 1385 11 . . . cord-010027-r0tl01kq 1386 1 Optimal optimal JJ cord-010027-r0tl01kq 1386 2 surgical surgical JJ cord-010027-r0tl01kq 1386 3 dissection dissection NN cord-010027-r0tl01kq 1386 4 during during IN cord-010027-r0tl01kq 1386 5 TME TME NNP cord-010027-r0tl01kq 1386 6 should should MD cord-010027-r0tl01kq 1386 7 be be VB cord-010027-r0tl01kq 1386 8 carried carry VBN cord-010027-r0tl01kq 1386 9 out out RP cord-010027-r0tl01kq 1386 10 anterior anterior NN cord-010027-r0tl01kq 1386 11 to to IN cord-010027-r0tl01kq 1386 12 DVF DVF NNP cord-010027-r0tl01kq 1386 13 to to TO cord-010027-r0tl01kq 1386 14 ensure ensure VB cord-010027-r0tl01kq 1386 15 radical radical JJ cord-010027-r0tl01kq 1386 16 removal removal NN cord-010027-r0tl01kq 1386 17 , , , cord-010027-r0tl01kq 1386 18 particularly particularly RB cord-010027-r0tl01kq 1386 19 for for IN cord-010027-r0tl01kq 1386 20 anterior anterior JJ cord-010027-r0tl01kq 1386 21 tumours tumour NNS cord-010027-r0tl01kq 1386 22 . . . cord-010027-r0tl01kq 1387 1 Autonomic autonomic JJ cord-010027-r0tl01kq 1387 2 nerves nerve NNS cord-010027-r0tl01kq 1387 3 are be VBP cord-010027-r0tl01kq 1387 4 at at IN cord-010027-r0tl01kq 1387 5 risk risk NN cord-010027-r0tl01kq 1387 6 , , , cord-010027-r0tl01kq 1387 7 but but CC cord-010027-r0tl01kq 1387 8 can can MD cord-010027-r0tl01kq 1387 9 be be VB cord-010027-r0tl01kq 1387 10 preserved preserve VBN cord-010027-r0tl01kq 1387 11 by by IN cord-010027-r0tl01kq 1387 12 following follow VBG cord-010027-r0tl01kq 1387 13 the the DT cord-010027-r0tl01kq 1387 14 mesorectal mesorectal JJ cord-010027-r0tl01kq 1387 15 fascia fascia NN cord-010027-r0tl01kq 1387 16 along along IN cord-010027-r0tl01kq 1387 17 the the DT cord-010027-r0tl01kq 1387 18 anterolateral anterolateral JJ cord-010027-r0tl01kq 1387 19 mesorectum mesorectum NN cord-010027-r0tl01kq 1387 20 . . . cord-010027-r0tl01kq 1388 1 The the DT cord-010027-r0tl01kq 1388 2 lack lack NN cord-010027-r0tl01kq 1388 3 of of IN cord-010027-r0tl01kq 1388 4 evident evident JJ cord-010027-r0tl01kq 1388 5 fasciae fascia NNS cord-010027-r0tl01kq 1388 6 in in IN cord-010027-r0tl01kq 1388 7 fetal fetal JJ cord-010027-r0tl01kq 1388 8 specimens specimen NNS cord-010027-r0tl01kq 1388 9 suggests suggest VBZ cord-010027-r0tl01kq 1388 10 that that IN cord-010027-r0tl01kq 1388 11 these these DT cord-010027-r0tl01kq 1388 12 might may MD cord-010027-r0tl01kq 1388 13 be be VB cord-010027-r0tl01kq 1388 14 formed form VBN cord-010027-r0tl01kq 1388 15 in in IN cord-010027-r0tl01kq 1388 16 later later JJ cord-010027-r0tl01kq 1388 17 developmental developmental JJ cord-010027-r0tl01kq 1388 18 stages stage NNS cord-010027-r0tl01kq 1388 19 . . . cord-010027-r0tl01kq 1389 1 The the DT cord-010027-r0tl01kq 1389 2 perineal perineal JJ cord-010027-r0tl01kq 1389 3 body body NN cord-010027-r0tl01kq 1389 4 ( ( -LRB- cord-010027-r0tl01kq 1389 5 PB PB NNP cord-010027-r0tl01kq 1389 6 ) ) -RRB- cord-010027-r0tl01kq 1389 7 is be VBZ cord-010027-r0tl01kq 1389 8 poorly poorly RB cord-010027-r0tl01kq 1389 9 understood understand VBN cord-010027-r0tl01kq 1389 10 . . . cord-010027-r0tl01kq 1390 1 In in IN cord-010027-r0tl01kq 1390 2 abdominoperineal abdominoperineal NN cord-010027-r0tl01kq 1390 3 excision excision NN cord-010027-r0tl01kq 1390 4 ( ( -LRB- cord-010027-r0tl01kq 1390 5 APE APE NNP cord-010027-r0tl01kq 1390 6 ) ) -RRB- cord-010027-r0tl01kq 1390 7 , , , cord-010027-r0tl01kq 1390 8 there there EX cord-010027-r0tl01kq 1390 9 is be VBZ cord-010027-r0tl01kq 1390 10 no no DT cord-010027-r0tl01kq 1390 11 natural natural JJ cord-010027-r0tl01kq 1390 12 dissection dissection NN cord-010027-r0tl01kq 1390 13 plane plane NN cord-010027-r0tl01kq 1390 14 through through IN cord-010027-r0tl01kq 1390 15 the the DT cord-010027-r0tl01kq 1390 16 PB PB NNP cord-010027-r0tl01kq 1390 17 . . . cord-010027-r0tl01kq 1391 1 Knowledge knowledge NN cord-010027-r0tl01kq 1391 2 of of IN cord-010027-r0tl01kq 1391 3 the the DT cord-010027-r0tl01kq 1391 4 PB PB NNP cord-010027-r0tl01kq 1391 5 is be VBZ cord-010027-r0tl01kq 1391 6 essential essential JJ cord-010027-r0tl01kq 1391 7 to to TO cord-010027-r0tl01kq 1391 8 avoid avoid VB cord-010027-r0tl01kq 1391 9 straying stray VBG cord-010027-r0tl01kq 1391 10 in in RP cord-010027-r0tl01kq 1391 11 to to IN cord-010027-r0tl01kq 1391 12 incorrect incorrect JJ cord-010027-r0tl01kq 1391 13 planes plane NNS cord-010027-r0tl01kq 1391 14 leading lead VBG cord-010027-r0tl01kq 1391 15 to to IN cord-010027-r0tl01kq 1391 16 tumour tumour NN cord-010027-r0tl01kq 1391 17 perforation perforation NN cord-010027-r0tl01kq 1391 18 and and CC cord-010027-r0tl01kq 1391 19 unnecessary unnecessary JJ cord-010027-r0tl01kq 1391 20 urogenital urogenital JJ cord-010027-r0tl01kq 1391 21 and and CC cord-010027-r0tl01kq 1391 22 anorectal anorectal JJ cord-010027-r0tl01kq 1391 23 injuries injury NNS cord-010027-r0tl01kq 1391 24 . . . cord-010027-r0tl01kq 1392 1 This this DT cord-010027-r0tl01kq 1392 2 study study NN cord-010027-r0tl01kq 1392 3 describes describe VBZ cord-010027-r0tl01kq 1392 4 the the DT cord-010027-r0tl01kq 1392 5 anatomy anatomy NN cord-010027-r0tl01kq 1392 6 of of IN cord-010027-r0tl01kq 1392 7 the the DT cord-010027-r0tl01kq 1392 8 PB PB NNP cord-010027-r0tl01kq 1392 9 and and CC cord-010027-r0tl01kq 1392 10 the the DT cord-010027-r0tl01kq 1392 11 implications implication NNS cord-010027-r0tl01kq 1392 12 for for IN cord-010027-r0tl01kq 1392 13 APE APE NNP cord-010027-r0tl01kq 1392 14 . . . cord-010027-r0tl01kq 1393 1 Six six CD cord-010027-r0tl01kq 1393 2 human human JJ cord-010027-r0tl01kq 1393 3 adult adult NN cord-010027-r0tl01kq 1393 4 cadaveric cadaveric JJ cord-010027-r0tl01kq 1393 5 specimens specimen NNS cord-010027-r0tl01kq 1393 6 ( ( -LRB- cord-010027-r0tl01kq 1393 7 three three CD cord-010027-r0tl01kq 1393 8 males male NNS cord-010027-r0tl01kq 1393 9 , , , cord-010027-r0tl01kq 1393 10 three three CD cord-010027-r0tl01kq 1393 11 females female NNS cord-010027-r0tl01kq 1393 12 ) ) -RRB- cord-010027-r0tl01kq 1393 13 were be VBD cord-010027-r0tl01kq 1393 14 obtained obtain VBN cord-010027-r0tl01kq 1393 15 from from IN cord-010027-r0tl01kq 1393 16 the the DT cord-010027-r0tl01kq 1393 17 Leeds Leeds NNP cord-010027-r0tl01kq 1393 18 GIFT GIFT NNP cord-010027-r0tl01kq 1393 19 Research Research NNP cord-010027-r0tl01kq 1393 20 Tissue Tissue NNP cord-010027-r0tl01kq 1393 21 Programme Programme NNP cord-010027-r0tl01kq 1393 22 . . . cord-010027-r0tl01kq 1394 1 Paraffin paraffin NN cord-010027-r0tl01kq 1394 2 - - HYPH cord-010027-r0tl01kq 1394 3 embedded embed VBN cord-010027-r0tl01kq 1394 4 mega mega NNS cord-010027-r0tl01kq 1394 5 - - NNS cord-010027-r0tl01kq 1394 6 blocks block NNS cord-010027-r0tl01kq 1394 7 containing contain VBG cord-010027-r0tl01kq 1394 8 the the DT cord-010027-r0tl01kq 1394 9 PB PB NNP cord-010027-r0tl01kq 1394 10 were be VBD cord-010027-r0tl01kq 1394 11 produced produce VBN cord-010027-r0tl01kq 1394 12 and and CC cord-010027-r0tl01kq 1394 13 serially serially RB cord-010027-r0tl01kq 1394 14 sectioned section VBN cord-010027-r0tl01kq 1394 15 at at IN cord-010027-r0tl01kq 1394 16 50 50 CD cord-010027-r0tl01kq 1394 17 and and CC cord-010027-r0tl01kq 1394 18 250 250 CD cord-010027-r0tl01kq 1394 19 µm µm CD cord-010027-r0tl01kq 1394 20 intervals interval NNS cord-010027-r0tl01kq 1394 21 . . . cord-010027-r0tl01kq 1395 1 Sections section NNS cord-010027-r0tl01kq 1395 2 were be VBD cord-010027-r0tl01kq 1395 3 stained stain VBN cord-010027-r0tl01kq 1395 4 to to TO cord-010027-r0tl01kq 1395 5 reveal reveal VB cord-010027-r0tl01kq 1395 6 collagen collagen NN cord-010027-r0tl01kq 1395 7 and and CC cord-010027-r0tl01kq 1395 8 elastin elastin NN cord-010027-r0tl01kq 1395 9 , , , cord-010027-r0tl01kq 1395 10 and and CC cord-010027-r0tl01kq 1395 11 with with IN cord-010027-r0tl01kq 1395 12 an an DT cord-010027-r0tl01kq 1395 13 antibody antibody NN cord-010027-r0tl01kq 1395 14 against against IN cord-010027-r0tl01kq 1395 15 α α NN cord-010027-r0tl01kq 1395 16 - - HYPH cord-010027-r0tl01kq 1395 17 smooth smooth JJ cord-010027-r0tl01kq 1395 18 muscle muscle NN cord-010027-r0tl01kq 1395 19 actin actin NN cord-010027-r0tl01kq 1395 20 . . . cord-010027-r0tl01kq 1396 1 The the DT cord-010027-r0tl01kq 1396 2 PB PB NNP cord-010027-r0tl01kq 1396 3 is be VBZ cord-010027-r0tl01kq 1396 4 formed form VBN cord-010027-r0tl01kq 1396 5 of of IN cord-010027-r0tl01kq 1396 6 a a DT cord-010027-r0tl01kq 1396 7 fibromuscular fibromuscular JJ cord-010027-r0tl01kq 1396 8 mass mass NN cord-010027-r0tl01kq 1396 9 , , , cord-010027-r0tl01kq 1396 10 which which WDT cord-010027-r0tl01kq 1396 11 was be VBD cord-010027-r0tl01kq 1396 12 thicker thick JJR cord-010027-r0tl01kq 1396 13 and and CC cord-010027-r0tl01kq 1396 14 wider wide JJR cord-010027-r0tl01kq 1396 15 in in IN cord-010027-r0tl01kq 1396 16 female female JJ cord-010027-r0tl01kq 1396 17 specimens specimen NNS cord-010027-r0tl01kq 1396 18 compared compare VBN cord-010027-r0tl01kq 1396 19 to to IN cord-010027-r0tl01kq 1396 20 males male NNS cord-010027-r0tl01kq 1396 21 , , , cord-010027-r0tl01kq 1396 22 extending extend VBG cord-010027-r0tl01kq 1396 23 from from IN cord-010027-r0tl01kq 1396 24 the the DT cord-010027-r0tl01kq 1396 25 external external JJ cord-010027-r0tl01kq 1396 26 anal anal JJ cord-010027-r0tl01kq 1396 27 sphincter sphincter NN cord-010027-r0tl01kq 1396 28 to to IN cord-010027-r0tl01kq 1396 29 the the DT cord-010027-r0tl01kq 1396 30 rectogenital rectogenital NN cord-010027-r0tl01kq 1396 31 septum septum NN cord-010027-r0tl01kq 1396 32 . . . cord-010027-r0tl01kq 1397 1 Muscles muscle NNS cord-010027-r0tl01kq 1397 2 from from IN cord-010027-r0tl01kq 1397 3 the the DT cord-010027-r0tl01kq 1397 4 urogenital urogenital JJ cord-010027-r0tl01kq 1397 5 diaphragm diaphragm NN cord-010027-r0tl01kq 1397 6 and and CC cord-010027-r0tl01kq 1397 7 anterior anterior JJ cord-010027-r0tl01kq 1397 8 rectal rectal JJ cord-010027-r0tl01kq 1397 9 wall wall NN cord-010027-r0tl01kq 1397 10 anchored anchor VBN cord-010027-r0tl01kq 1397 11 into into IN cord-010027-r0tl01kq 1397 12 the the DT cord-010027-r0tl01kq 1397 13 PB PB NNP cord-010027-r0tl01kq 1397 14 . . . cord-010027-r0tl01kq 1398 1 The the DT cord-010027-r0tl01kq 1398 2 longitudinal longitudinal JJ cord-010027-r0tl01kq 1398 3 muscle muscle NN cord-010027-r0tl01kq 1398 4 ( ( -LRB- cord-010027-r0tl01kq 1398 5 LM LM NNP cord-010027-r0tl01kq 1398 6 ) ) -RRB- cord-010027-r0tl01kq 1398 7 of of IN cord-010027-r0tl01kq 1398 8 the the DT cord-010027-r0tl01kq 1398 9 rectal rectal JJ cord-010027-r0tl01kq 1398 10 muscularis muscularis NNP cord-010027-r0tl01kq 1398 11 propria propria NN cord-010027-r0tl01kq 1398 12 extended extend VBN cord-010027-r0tl01kq 1398 13 in in IN cord-010027-r0tl01kq 1398 14 anterolateral anterolateral JJ cord-010027-r0tl01kq 1398 15 directions direction NNS cord-010027-r0tl01kq 1398 16 and and CC cord-010027-r0tl01kq 1398 17 intertwined intertwine VBN cord-010027-r0tl01kq 1398 18 with with IN cord-010027-r0tl01kq 1398 19 the the DT cord-010027-r0tl01kq 1398 20 somatic somatic JJ cord-010027-r0tl01kq 1398 21 pelvic pelvic JJ cord-010027-r0tl01kq 1398 22 floor floor NN cord-010027-r0tl01kq 1398 23 muscles muscle NNS cord-010027-r0tl01kq 1398 24 to to TO cord-010027-r0tl01kq 1398 25 create create VB cord-010027-r0tl01kq 1398 26 strong strong JJ cord-010027-r0tl01kq 1398 27 fixation fixation NN cord-010027-r0tl01kq 1398 28 of of IN cord-010027-r0tl01kq 1398 29 the the DT cord-010027-r0tl01kq 1398 30 anorectum anorectum NNP cord-010027-r0tl01kq 1398 31 . . . cord-010027-r0tl01kq 1399 1 The the DT cord-010027-r0tl01kq 1399 2 LM LM NNP cord-010027-r0tl01kq 1399 3 plays play VBZ cord-010027-r0tl01kq 1399 4 a a DT cord-010027-r0tl01kq 1399 5 dominant dominant JJ cord-010027-r0tl01kq 1399 6 role role NN cord-010027-r0tl01kq 1399 7 in in IN cord-010027-r0tl01kq 1399 8 the the DT cord-010027-r0tl01kq 1399 9 formation formation NN cord-010027-r0tl01kq 1399 10 of of IN cord-010027-r0tl01kq 1399 11 the the DT cord-010027-r0tl01kq 1399 12 PB PB NNP cord-010027-r0tl01kq 1399 13 . . . cord-010027-r0tl01kq 1400 1 Surgeons surgeon NNS cord-010027-r0tl01kq 1400 2 should should MD cord-010027-r0tl01kq 1400 3 be be VB cord-010027-r0tl01kq 1400 4 aware aware JJ cord-010027-r0tl01kq 1400 5 of of IN cord-010027-r0tl01kq 1400 6 the the DT cord-010027-r0tl01kq 1400 7 complex complex JJ cord-010027-r0tl01kq 1400 8 course course NN cord-010027-r0tl01kq 1400 9 of of IN cord-010027-r0tl01kq 1400 10 the the DT cord-010027-r0tl01kq 1400 11 LM LM NNP cord-010027-r0tl01kq 1400 12 through through IN cord-010027-r0tl01kq 1400 13 the the DT cord-010027-r0tl01kq 1400 14 PB PB NNP cord-010027-r0tl01kq 1400 15 to to TO cord-010027-r0tl01kq 1400 16 prevent prevent VB cord-010027-r0tl01kq 1400 17 injuries injury NNS cord-010027-r0tl01kq 1400 18 to to IN cord-010027-r0tl01kq 1400 19 the the DT cord-010027-r0tl01kq 1400 20 urogenital urogenital JJ cord-010027-r0tl01kq 1400 21 organs organ NNS cord-010027-r0tl01kq 1400 22 and and CC cord-010027-r0tl01kq 1400 23 perforation perforation NN cord-010027-r0tl01kq 1400 24 of of IN cord-010027-r0tl01kq 1400 25 the the DT cord-010027-r0tl01kq 1400 26 anterior anterior JJ cord-010027-r0tl01kq 1400 27 rectal rectal JJ cord-010027-r0tl01kq 1400 28 wall wall NN cord-010027-r0tl01kq 1400 29 . . . cord-010027-r0tl01kq 1401 1 The the DT cord-010027-r0tl01kq 1401 2 perineal perineal JJ cord-010027-r0tl01kq 1401 3 phase phase NN cord-010027-r0tl01kq 1401 4 of of IN cord-010027-r0tl01kq 1401 5 an an DT cord-010027-r0tl01kq 1401 6 APE ape NN cord-010027-r0tl01kq 1401 7 starts start VBZ cord-010027-r0tl01kq 1401 8 with with IN cord-010027-r0tl01kq 1401 9 excellent excellent JJ cord-010027-r0tl01kq 1401 10 exposure exposure NN cord-010027-r0tl01kq 1401 11 followed follow VBN cord-010027-r0tl01kq 1401 12 by by IN cord-010027-r0tl01kq 1401 13 proper proper JJ cord-010027-r0tl01kq 1401 14 tension tension NN cord-010027-r0tl01kq 1401 15 on on IN cord-010027-r0tl01kq 1401 16 the the DT cord-010027-r0tl01kq 1401 17 PB PB NNP cord-010027-r0tl01kq 1401 18 to to TO cord-010027-r0tl01kq 1401 19 allow allow VB cord-010027-r0tl01kq 1401 20 safe safe JJ cord-010027-r0tl01kq 1401 21 dissection dissection NN cord-010027-r0tl01kq 1401 22 through through IN cord-010027-r0tl01kq 1401 23 the the DT cord-010027-r0tl01kq 1401 24 densely densely RB cord-010027-r0tl01kq 1401 25 - - HYPH cord-010027-r0tl01kq 1401 26 packed pack VBN cord-010027-r0tl01kq 1401 27 fibromuscular fibromuscular JJ cord-010027-r0tl01kq 1401 28 mass mass NN cord-010027-r0tl01kq 1401 29 . . . cord-010027-r0tl01kq 1402 1 Introduction introduction NN cord-010027-r0tl01kq 1402 2 : : : cord-010027-r0tl01kq 1402 3 Ki67 Ki67 NNP cord-010027-r0tl01kq 1402 4 is be VBZ cord-010027-r0tl01kq 1402 5 a a DT cord-010027-r0tl01kq 1402 6 proliferation proliferation NN cord-010027-r0tl01kq 1402 7 marker marker NN cord-010027-r0tl01kq 1402 8 that that WDT cord-010027-r0tl01kq 1402 9 is be VBZ cord-010027-r0tl01kq 1402 10 exclusively exclusively RB cord-010027-r0tl01kq 1402 11 present present JJ cord-010027-r0tl01kq 1402 12 in in IN cord-010027-r0tl01kq 1402 13 dividing divide VBG cord-010027-r0tl01kq 1402 14 cells cell NNS cord-010027-r0tl01kq 1402 15 and and CC cord-010027-r0tl01kq 1402 16 absent absent JJ cord-010027-r0tl01kq 1402 17 in in IN cord-010027-r0tl01kq 1402 18 resting rest VBG cord-010027-r0tl01kq 1402 19 cells cell NNS cord-010027-r0tl01kq 1402 20 . . . cord-010027-r0tl01kq 1403 1 Its -PRON- PRP$ cord-010027-r0tl01kq 1403 2 expression expression NN cord-010027-r0tl01kq 1403 3 has have VBZ cord-010027-r0tl01kq 1403 4 already already RB cord-010027-r0tl01kq 1403 5 been be VBN cord-010027-r0tl01kq 1403 6 studied study VBN cord-010027-r0tl01kq 1403 7 in in IN cord-010027-r0tl01kq 1403 8 different different JJ cord-010027-r0tl01kq 1403 9 cancers cancer NNS cord-010027-r0tl01kq 1403 10 and and CC cord-010027-r0tl01kq 1403 11 used use VBD cord-010027-r0tl01kq 1403 12 to to TO cord-010027-r0tl01kq 1403 13 understand understand VB cord-010027-r0tl01kq 1403 14 the the DT cord-010027-r0tl01kq 1403 15 cellular cellular JJ cord-010027-r0tl01kq 1403 16 organisation organisation NN cord-010027-r0tl01kq 1403 17 of of IN cord-010027-r0tl01kq 1403 18 Barrett Barrett NNP cord-010027-r0tl01kq 1403 19 's 's POS cord-010027-r0tl01kq 1403 20 epithelium epithelium NN cord-010027-r0tl01kq 1403 21 ( ( -LRB- cord-010027-r0tl01kq 1403 22 Lavery Lavery NNP cord-010027-r0tl01kq 1403 23 2014 2014 CD cord-010027-r0tl01kq 1403 24 ) ) -RRB- cord-010027-r0tl01kq 1403 25 . . . cord-010027-r0tl01kq 1404 1 However however RB cord-010027-r0tl01kq 1404 2 , , , cord-010027-r0tl01kq 1404 3 very very RB cord-010027-r0tl01kq 1404 4 little little JJ cord-010027-r0tl01kq 1404 5 is be VBZ cord-010027-r0tl01kq 1404 6 known know VBN cord-010027-r0tl01kq 1404 7 about about IN cord-010027-r0tl01kq 1404 8 the the DT cord-010027-r0tl01kq 1404 9 cellular cellular JJ cord-010027-r0tl01kq 1404 10 organisation organisation NN cord-010027-r0tl01kq 1404 11 based base VBN cord-010027-r0tl01kq 1404 12 on on IN cord-010027-r0tl01kq 1404 13 Ki67 Ki67 NNP cord-010027-r0tl01kq 1404 14 expression expression NN cord-010027-r0tl01kq 1404 15 patterns pattern NNS cord-010027-r0tl01kq 1404 16 in in IN cord-010027-r0tl01kq 1404 17 upper upper JJ cord-010027-r0tl01kq 1404 18 GI gi NN cord-010027-r0tl01kq 1404 19 sequence sequence NN cord-010027-r0tl01kq 1404 20 . . . cord-010027-r0tl01kq 1405 1 This this DT cord-010027-r0tl01kq 1405 2 study study NN cord-010027-r0tl01kq 1405 3 aims aim VBZ cord-010027-r0tl01kq 1405 4 to to TO cord-010027-r0tl01kq 1405 5 examine examine VB cord-010027-r0tl01kq 1405 6 the the DT cord-010027-r0tl01kq 1405 7 cellular cellular JJ cord-010027-r0tl01kq 1405 8 organisation organisation NN cord-010027-r0tl01kq 1405 9 as as IN cord-010027-r0tl01kq 1405 10 defined define VBN cord-010027-r0tl01kq 1405 11 by by IN cord-010027-r0tl01kq 1405 12 Ki67 Ki67 NNP cord-010027-r0tl01kq 1405 13 expression expression NN cord-010027-r0tl01kq 1405 14 patterns pattern NNS cord-010027-r0tl01kq 1405 15 in in IN cord-010027-r0tl01kq 1405 16 upper upper JJ cord-010027-r0tl01kq 1405 17 GI gi NN cord-010027-r0tl01kq 1405 18 cancer cancer NN cord-010027-r0tl01kq 1405 19 sequence sequence NN cord-010027-r0tl01kq 1405 20 . . . cord-010027-r0tl01kq 1406 1 Methods method NNS cord-010027-r0tl01kq 1406 2 : : : cord-010027-r0tl01kq 1406 3 Ki67 ki67 ADD cord-010027-r0tl01kq 1407 1 expression expression NN cord-010027-r0tl01kq 1407 2 within within IN cord-010027-r0tl01kq 1407 3 Barrett Barrett NNP cord-010027-r0tl01kq 1407 4 's 's POS cord-010027-r0tl01kq 1407 5 crypts crypt NNS cord-010027-r0tl01kq 1407 6 was be VBD cord-010027-r0tl01kq 1407 7 assessed assess VBN cord-010027-r0tl01kq 1407 8 in in IN cord-010027-r0tl01kq 1407 9 40 40 CD cord-010027-r0tl01kq 1407 10 cases case NNS cord-010027-r0tl01kq 1407 11 ( ( -LRB- cord-010027-r0tl01kq 1407 12 NBDE NBDE NNP cord-010027-r0tl01kq 1407 13 11 11 CD cord-010027-r0tl01kq 1407 14 , , , cord-010027-r0tl01kq 1407 15 LGD LGD NNP cord-010027-r0tl01kq 1407 16 15 15 CD cord-010027-r0tl01kq 1407 17 , , , cord-010027-r0tl01kq 1407 18 HGD HGD NNP cord-010027-r0tl01kq 1407 19 14 14 CD cord-010027-r0tl01kq 1407 20 ) ) -RRB- cord-010027-r0tl01kq 1407 21 . . . cord-010027-r0tl01kq 1408 1 The the DT cord-010027-r0tl01kq 1408 2 Barrett Barrett NNP cord-010027-r0tl01kq 1408 3 's 's POS cord-010027-r0tl01kq 1408 4 crypts crypt NNS cord-010027-r0tl01kq 1408 5 were be VBD cord-010027-r0tl01kq 1408 6 divided divide VBN cord-010027-r0tl01kq 1408 7 into into IN cord-010027-r0tl01kq 1408 8 three three CD cord-010027-r0tl01kq 1408 9 equal equal JJ cord-010027-r0tl01kq 1408 10 regions region NNS cord-010027-r0tl01kq 1408 11 : : : cord-010027-r0tl01kq 1408 12 crypt crypt NN cord-010027-r0tl01kq 1408 13 base base NN cord-010027-r0tl01kq 1408 14 ( ( -LRB- cord-010027-r0tl01kq 1408 15 bottom bottom NN cord-010027-r0tl01kq 1408 16 third third RB cord-010027-r0tl01kq 1408 17 ) ) -RRB- cord-010027-r0tl01kq 1408 18 , , , cord-010027-r0tl01kq 1408 19 middle middle JJ cord-010027-r0tl01kq 1408 20 region region NN cord-010027-r0tl01kq 1408 21 and and CC cord-010027-r0tl01kq 1408 22 the the DT cord-010027-r0tl01kq 1408 23 surface surface NN cord-010027-r0tl01kq 1408 24 ( ( -LRB- cord-010027-r0tl01kq 1408 25 upper upper JJ cord-010027-r0tl01kq 1408 26 third third NN cord-010027-r0tl01kq 1408 27 ) ) -RRB- cord-010027-r0tl01kq 1408 28 , , , cord-010027-r0tl01kq 1408 29 respectively respectively RB cord-010027-r0tl01kq 1408 30 . . . cord-010027-r0tl01kq 1409 1 Ki67 Ki67 NNP cord-010027-r0tl01kq 1409 2 was be VBD cord-010027-r0tl01kq 1409 3 scored score VBN cord-010027-r0tl01kq 1409 4 using use VBG cord-010027-r0tl01kq 1409 5 the the DT cord-010027-r0tl01kq 1409 6 Allred Allred NNP cord-010027-r0tl01kq 1409 7 system system NN cord-010027-r0tl01kq 1409 8 and and CC cord-010027-r0tl01kq 1409 9 analysed analyse VBD cord-010027-r0tl01kq 1409 10 using use VBG cord-010027-r0tl01kq 1409 11 one one CD cord-010027-r0tl01kq 1409 12 - - HYPH cord-010027-r0tl01kq 1409 13 way way NN cord-010027-r0tl01kq 1409 14 ANOVA anova NN cord-010027-r0tl01kq 1409 15 with with IN cord-010027-r0tl01kq 1409 16 Bonferroni Bonferroni NNP cord-010027-r0tl01kq 1409 17 post post VB cord-010027-r0tl01kq 1409 18 - - JJ cord-010027-r0tl01kq 1409 19 hoc hoc JJ cord-010027-r0tl01kq 1409 20 analysis analysis NN cord-010027-r0tl01kq 1409 21 . . . cord-010027-r0tl01kq 1410 1 Results result NNS cord-010027-r0tl01kq 1410 2 : : : cord-010027-r0tl01kq 1411 1 One one CD cord-010027-r0tl01kq 1411 2 - - HYPH cord-010027-r0tl01kq 1411 3 way way NN cord-010027-r0tl01kq 1411 4 ANOVA ANOVA NNP cord-010027-r0tl01kq 1411 5 showed show VBD cord-010027-r0tl01kq 1411 6 significant significant JJ cord-010027-r0tl01kq 1411 7 difference difference NN cord-010027-r0tl01kq 1411 8 across across IN cord-010027-r0tl01kq 1411 9 the the DT cord-010027-r0tl01kq 1411 10 three three CD cord-010027-r0tl01kq 1411 11 groups group NNS cord-010027-r0tl01kq 1411 12 ( ( -LRB- cord-010027-r0tl01kq 1411 13 p p NN cord-010027-r0tl01kq 1411 14 < < XX cord-010027-r0tl01kq 1411 15 0.0001 0.0001 CD cord-010027-r0tl01kq 1411 16 ) ) -RRB- cord-010027-r0tl01kq 1411 17 . . . cord-010027-r0tl01kq 1412 1 Bonferroni bonferroni RB cord-010027-r0tl01kq 1412 2 post post VB cord-010027-r0tl01kq 1412 3 - - JJ cord-010027-r0tl01kq 1412 4 hoc hoc JJ cord-010027-r0tl01kq 1412 5 analysis analysis NN cord-010027-r0tl01kq 1412 6 showed show VBD cord-010027-r0tl01kq 1412 7 significant significant JJ cord-010027-r0tl01kq 1412 8 difference difference NN cord-010027-r0tl01kq 1412 9 in in IN cord-010027-r0tl01kq 1412 10 the the DT cord-010027-r0tl01kq 1412 11 surface surface NN cord-010027-r0tl01kq 1412 12 architecture architecture NN cord-010027-r0tl01kq 1412 13 between between IN cord-010027-r0tl01kq 1412 14 NBDE NBDE NNP cord-010027-r0tl01kq 1412 15 and and CC cord-010027-r0tl01kq 1412 16 HGD hgd NN cord-010027-r0tl01kq 1412 17 ( ( -LRB- cord-010027-r0tl01kq 1412 18 p p NN cord-010027-r0tl01kq 1412 19 < < XX cord-010027-r0tl01kq 1412 20 0.0001 0.0001 CD cord-010027-r0tl01kq 1412 21 ) ) -RRB- cord-010027-r0tl01kq 1412 22 and and CC cord-010027-r0tl01kq 1412 23 LGD LGD NNP cord-010027-r0tl01kq 1412 24 and and CC cord-010027-r0tl01kq 1412 25 HGD HGD NNP cord-010027-r0tl01kq 1412 26 ( ( -LRB- cord-010027-r0tl01kq 1412 27 p p NN cord-010027-r0tl01kq 1412 28 < < XX cord-010027-r0tl01kq 1412 29 0.0001 0.0001 CD cord-010027-r0tl01kq 1412 30 ) ) -RRB- cord-010027-r0tl01kq 1412 31 . . . cord-010027-r0tl01kq 1413 1 For for IN cord-010027-r0tl01kq 1413 2 the the DT cord-010027-r0tl01kq 1413 3 middle middle JJ cord-010027-r0tl01kq 1413 4 region region NN cord-010027-r0tl01kq 1413 5 , , , cord-010027-r0tl01kq 1413 6 although although IN cord-010027-r0tl01kq 1413 7 there there EX cord-010027-r0tl01kq 1413 8 was be VBD cord-010027-r0tl01kq 1413 9 no no DT cord-010027-r0tl01kq 1413 10 statistical statistical JJ cord-010027-r0tl01kq 1413 11 significance significance NN cord-010027-r0tl01kq 1413 12 between between IN cord-010027-r0tl01kq 1413 13 the the DT cord-010027-r0tl01kq 1413 14 groups group NNS cord-010027-r0tl01kq 1413 15 , , , cord-010027-r0tl01kq 1413 16 NBDE NBDE NNP cord-010027-r0tl01kq 1413 17 and and CC cord-010027-r0tl01kq 1413 18 LGD LGD NNP cord-010027-r0tl01kq 1413 19 and and CC cord-010027-r0tl01kq 1413 20 LGD LGD NNP cord-010027-r0tl01kq 1413 21 and and CC cord-010027-r0tl01kq 1413 22 HGD HGD NNP cord-010027-r0tl01kq 1413 23 showed show VBD cord-010027-r0tl01kq 1413 24 statistical statistical JJ cord-010027-r0tl01kq 1413 25 trends trend NNS cord-010027-r0tl01kq 1414 1 ( ( -LRB- cord-010027-r0tl01kq 1414 2 p p NN cord-010027-r0tl01kq 1414 3 = = SYM cord-010027-r0tl01kq 1414 4 0.079 0.079 CD cord-010027-r0tl01kq 1414 5 and and CC cord-010027-r0tl01kq 1414 6 p p NN cord-010027-r0tl01kq 1414 7 = = SYM cord-010027-r0tl01kq 1414 8 0.089 0.089 CD cord-010027-r0tl01kq 1414 9 respectively respectively RB cord-010027-r0tl01kq 1414 10 ) ) -RRB- cord-010027-r0tl01kq 1414 11 . . . cord-010027-r0tl01kq 1415 1 For for IN cord-010027-r0tl01kq 1415 2 the the DT cord-010027-r0tl01kq 1415 3 basal basal NN cord-010027-r0tl01kq 1415 4 compartment compartment NN cord-010027-r0tl01kq 1415 5 there there EX cord-010027-r0tl01kq 1415 6 was be VBD cord-010027-r0tl01kq 1415 7 significant significant JJ cord-010027-r0tl01kq 1415 8 difference difference NN cord-010027-r0tl01kq 1415 9 between between IN cord-010027-r0tl01kq 1415 10 NBDE NBDE NNP cord-010027-r0tl01kq 1415 11 and and CC cord-010027-r0tl01kq 1415 12 LGD LGD NNP cord-010027-r0tl01kq 1415 13 ( ( -LRB- cord-010027-r0tl01kq 1415 14 p p NN cord-010027-r0tl01kq 1415 15 = = SYM cord-010027-r0tl01kq 1415 16 0.035 0.035 CD cord-010027-r0tl01kq 1415 17 ) ) -RRB- cord-010027-r0tl01kq 1415 18 . . . cord-010027-r0tl01kq 1416 1 This this DT cord-010027-r0tl01kq 1416 2 study study NN cord-010027-r0tl01kq 1416 3 showed show VBD cord-010027-r0tl01kq 1416 4 for for IN cord-010027-r0tl01kq 1416 5 the the DT cord-010027-r0tl01kq 1416 6 first first JJ cord-010027-r0tl01kq 1416 7 time time NN cord-010027-r0tl01kq 1416 8 a a DT cord-010027-r0tl01kq 1416 9 significant significant JJ cord-010027-r0tl01kq 1416 10 difference difference NN cord-010027-r0tl01kq 1416 11 in in IN cord-010027-r0tl01kq 1416 12 the the DT cord-010027-r0tl01kq 1416 13 Ki67 Ki67 NNP cord-010027-r0tl01kq 1416 14 expression expression NN cord-010027-r0tl01kq 1416 15 between between IN cord-010027-r0tl01kq 1416 16 NBDE NBDE NNP cord-010027-r0tl01kq 1416 17 , , , cord-010027-r0tl01kq 1416 18 LGD LGD NNP cord-010027-r0tl01kq 1416 19 and and CC cord-010027-r0tl01kq 1416 20 HGD HGD NNP cord-010027-r0tl01kq 1416 21 in in IN cord-010027-r0tl01kq 1416 22 the the DT cord-010027-r0tl01kq 1416 23 basal basal NN cord-010027-r0tl01kq 1416 24 and and CC cord-010027-r0tl01kq 1416 25 surface surface NN cord-010027-r0tl01kq 1416 26 regions region NNS cord-010027-r0tl01kq 1416 27 . . . cord-010027-r0tl01kq 1417 1 Middle middle JJ cord-010027-r0tl01kq 1417 2 compartments compartment NNS cord-010027-r0tl01kq 1417 3 showed show VBD cord-010027-r0tl01kq 1417 4 trends trend NNS cord-010027-r0tl01kq 1417 5 but but CC cord-010027-r0tl01kq 1417 6 additional additional JJ cord-010027-r0tl01kq 1417 7 NDBE NDBE NNP cord-010027-r0tl01kq 1417 8 , , , cord-010027-r0tl01kq 1417 9 LGD LGD NNP cord-010027-r0tl01kq 1417 10 and and CC cord-010027-r0tl01kq 1417 11 HGD HGD NNP cord-010027-r0tl01kq 1417 12 groups group NNS cord-010027-r0tl01kq 1417 13 need need VBP cord-010027-r0tl01kq 1417 14 to to TO cord-010027-r0tl01kq 1417 15 be be VB cord-010027-r0tl01kq 1417 16 analysed analyse VBN cord-010027-r0tl01kq 1417 17 to to TO cord-010027-r0tl01kq 1417 18 increase increase VB cord-010027-r0tl01kq 1417 19 the the DT cord-010027-r0tl01kq 1417 20 statistical statistical JJ cord-010027-r0tl01kq 1417 21 power power NN cord-010027-r0tl01kq 1417 22 . . . cord-010027-r0tl01kq 1418 1 The the DT cord-010027-r0tl01kq 1418 2 results result NNS cord-010027-r0tl01kq 1418 3 warrant warrant VBP cord-010027-r0tl01kq 1418 4 further further JJ cord-010027-r0tl01kq 1418 5 molecular molecular JJ cord-010027-r0tl01kq 1418 6 analysis analysis NN cord-010027-r0tl01kq 1418 7 between between IN cord-010027-r0tl01kq 1418 8 the the DT cord-010027-r0tl01kq 1418 9 various various JJ cord-010027-r0tl01kq 1418 10 groups group NNS cord-010027-r0tl01kq 1418 11 and and CC cord-010027-r0tl01kq 1418 12 show show VB cord-010027-r0tl01kq 1418 13 a a DT cord-010027-r0tl01kq 1418 14 clear clear JJ cord-010027-r0tl01kq 1418 15 role role NN cord-010027-r0tl01kq 1418 16 for for IN cord-010027-r0tl01kq 1418 17 proliferation proliferation NN cord-010027-r0tl01kq 1418 18 in in IN cord-010027-r0tl01kq 1418 19 the the DT cord-010027-r0tl01kq 1418 20 maintenance maintenance NN cord-010027-r0tl01kq 1418 21 of of IN cord-010027-r0tl01kq 1418 22 the the DT cord-010027-r0tl01kq 1418 23 cellular cellular JJ cord-010027-r0tl01kq 1418 24 architecture architecture NN cord-010027-r0tl01kq 1418 25 and and CC cord-010027-r0tl01kq 1418 26 organisation organisation NN cord-010027-r0tl01kq 1418 27 across across IN cord-010027-r0tl01kq 1418 28 the the DT cord-010027-r0tl01kq 1418 29 upper upper JJ cord-010027-r0tl01kq 1418 30 GI GI NNP cord-010027-r0tl01kq 1418 31 groups group NNS cord-010027-r0tl01kq 1418 32 which which WDT cord-010027-r0tl01kq 1418 33 might may MD cord-010027-r0tl01kq 1418 34 help help VB cord-010027-r0tl01kq 1418 35 in in IN cord-010027-r0tl01kq 1418 36 the the DT cord-010027-r0tl01kq 1418 37 understanding understanding NN cord-010027-r0tl01kq 1418 38 of of IN cord-010027-r0tl01kq 1418 39 the the DT cord-010027-r0tl01kq 1418 40 origin origin NN cord-010027-r0tl01kq 1418 41 and and CC cord-010027-r0tl01kq 1418 42 development development NN cord-010027-r0tl01kq 1418 43 of of IN cord-010027-r0tl01kq 1418 44 OAC OAC NNP cord-010027-r0tl01kq 1418 45 . . . cord-010027-r0tl01kq 1419 1 • • NNP cord-010027-r0tl01kq 1420 1 Frequency frequency NN cord-010027-r0tl01kq 1420 2 of of IN cord-010027-r0tl01kq 1420 3 serosal serosal NN cord-010027-r0tl01kq 1420 4 involvement involvement NN cord-010027-r0tl01kq 1420 5 in in IN cord-010027-r0tl01kq 1420 6 rectal rectal JJ cord-010027-r0tl01kq 1420 7 cancers cancer NNS cord-010027-r0tl01kq 1420 8 ( ( -LRB- cord-010027-r0tl01kq 1420 9 suggested suggest VBN cord-010027-r0tl01kq 1420 10 contributing contributing NN cord-010027-r0tl01kq 1420 11 factors factor NNS cord-010027-r0tl01kq 1420 12 for for IN cord-010027-r0tl01kq 1420 13 this this DT cord-010027-r0tl01kq 1420 14 include include VBP cord-010027-r0tl01kq 1420 15 effect effect NN cord-010027-r0tl01kq 1420 16 of of IN cord-010027-r0tl01kq 1420 17 pre pre JJ cord-010027-r0tl01kq 1420 18 - - JJ cord-010027-r0tl01kq 1420 19 operative operative JJ cord-010027-r0tl01kq 1420 20 therapy therapy NN cord-010027-r0tl01kq 1420 21 , , , cord-010027-r0tl01kq 1420 22 tumour tumour NN cord-010027-r0tl01kq 1420 23 regression regression NN cord-010027-r0tl01kq 1420 24 and and CC cord-010027-r0tl01kq 1420 25 recent recent JJ cord-010027-r0tl01kq 1420 26 changes change NNS cord-010027-r0tl01kq 1420 27 in in IN cord-010027-r0tl01kq 1420 28 surgical surgical JJ cord-010027-r0tl01kq 1420 29 practice practice NN cord-010027-r0tl01kq 1420 30 ) ) -RRB- cord-010027-r0tl01kq 1420 31 . . . cord-010027-r0tl01kq 1421 1 • • NNP cord-010027-r0tl01kq 1422 1 Turnaround turnaround NN cord-010027-r0tl01kq 1422 2 times time NNS cord-010027-r0tl01kq 1422 3 : : : cord-010027-r0tl01kq 1422 4 suggested suggest VBN cord-010027-r0tl01kq 1422 5 contributing contributing NN cord-010027-r0tl01kq 1422 6 factors factor NNS cord-010027-r0tl01kq 1422 7 include include VBP cord-010027-r0tl01kq 1422 8 increased increase VBN cord-010027-r0tl01kq 1422 9 departmental departmental JJ cord-010027-r0tl01kq 1422 10 workload workload NN cord-010027-r0tl01kq 1422 11 , , , cord-010027-r0tl01kq 1422 12 retirements retirement NNS cord-010027-r0tl01kq 1422 13 and and CC cord-010027-r0tl01kq 1422 14 reduced reduce VBN cord-010027-r0tl01kq 1422 15 reporting reporting NN cord-010027-r0tl01kq 1422 16 capacity capacity NN cord-010027-r0tl01kq 1422 17 . . . cord-010027-r0tl01kq 1423 1 The the DT cord-010027-r0tl01kq 1423 2 following following JJ cord-010027-r0tl01kq 1423 3 action action NN cord-010027-r0tl01kq 1423 4 plan plan NN cord-010027-r0tl01kq 1423 5 was be VBD cord-010027-r0tl01kq 1423 6 implemented implement VBN cord-010027-r0tl01kq 1423 7 to to TO cord-010027-r0tl01kq 1423 8 improve improve VB cord-010027-r0tl01kq 1423 9 compliance compliance NN cord-010027-r0tl01kq 1423 10 with with IN cord-010027-r0tl01kq 1423 11 standards standard NNS cord-010027-r0tl01kq 1423 12 : : : cord-010027-r0tl01kq 1424 1 • • NNP cord-010027-r0tl01kq 1425 1 Ensure ensure VB cord-010027-r0tl01kq 1425 2 all all DT cord-010027-r0tl01kq 1425 3 pathologists pathologist NNS cord-010027-r0tl01kq 1425 4 are be VBP cord-010027-r0tl01kq 1425 5 aware aware JJ cord-010027-r0tl01kq 1425 6 of of IN cord-010027-r0tl01kq 1425 7 results result NNS cord-010027-r0tl01kq 1425 8 via via IN cord-010027-r0tl01kq 1425 9 presentation presentation NN cord-010027-r0tl01kq 1425 10 / / SYM cord-010027-r0tl01kq 1425 11 dissemination dissemination NN cord-010027-r0tl01kq 1425 12 of of IN cord-010027-r0tl01kq 1425 13 audit audit NN cord-010027-r0tl01kq 1425 14 report report NN cord-010027-r0tl01kq 1426 1 • • NNP cord-010027-r0tl01kq 1426 2 Identify identify VB cord-010027-r0tl01kq 1426 3 issues issue NNS cord-010027-r0tl01kq 1426 4 affecting affect VBG cord-010027-r0tl01kq 1426 5 turn turn NN cord-010027-r0tl01kq 1426 6 - - HYPH cord-010027-r0tl01kq 1426 7 around around RP cord-010027-r0tl01kq 1426 8 times time NNS cord-010027-r0tl01kq 1426 9 and and CC cord-010027-r0tl01kq 1426 10 improvement improvement NN cord-010027-r0tl01kq 1426 11 strategies strategy NNS cord-010027-r0tl01kq 1427 1 • • NNP cord-010027-r0tl01kq 1428 1 Support support NN cord-010027-r0tl01kq 1428 2 recruitment recruitment NN cord-010027-r0tl01kq 1428 3 to to TO cord-010027-r0tl01kq 1428 4 increase increase VB cord-010027-r0tl01kq 1428 5 reporting reporting NN cord-010027-r0tl01kq 1428 6 capacity capacity NN cord-010027-r0tl01kq 1428 7 . . . cord-010027-r0tl01kq 1429 1 • • NNP cord-010027-r0tl01kq 1430 1 Maintain maintain VB cord-010027-r0tl01kq 1430 2 awareness awareness NN cord-010027-r0tl01kq 1430 3 of of IN cord-010027-r0tl01kq 1430 4 the the DT cord-010027-r0tl01kq 1430 5 need need NN cord-010027-r0tl01kq 1430 6 to to TO cord-010027-r0tl01kq 1430 7 recognise recognise VB cord-010027-r0tl01kq 1430 8 serosal serosal NN cord-010027-r0tl01kq 1430 9 involvement involvement NN cord-010027-r0tl01kq 1430 10 in in IN cord-010027-r0tl01kq 1430 11 rectal rectal JJ cord-010027-r0tl01kq 1430 12 excisions excision NNS cord-010027-r0tl01kq 1430 13 . . . cord-010027-r0tl01kq 1431 1 • • NNP cord-010027-r0tl01kq 1432 1 Re Re NNS cord-010027-r0tl01kq 1432 2 - - NN cord-010027-r0tl01kq 1432 3 audit audit NN cord-010027-r0tl01kq 1432 4 in in IN cord-010027-r0tl01kq 1432 5 1 1 CD cord-010027-r0tl01kq 1432 6 year year NN cord-010027-r0tl01kq 1432 7 . . . cord-010027-r0tl01kq 1433 1 The the DT cord-010027-r0tl01kq 1433 2 design design NN cord-010027-r0tl01kq 1433 3 and and CC cord-010027-r0tl01kq 1433 4 maintenance maintenance NN cord-010027-r0tl01kq 1433 5 of of IN cord-010027-r0tl01kq 1433 6 a a DT cord-010027-r0tl01kq 1433 7 pilot pilot NN cord-010027-r0tl01kq 1433 8 online online NN cord-010027-r0tl01kq 1433 9 digital digital JJ cord-010027-r0tl01kq 1433 10 archive archive NN cord-010027-r0tl01kq 1433 11 of of IN cord-010027-r0tl01kq 1433 12 archetype archetype NN cord-010027-r0tl01kq 1433 13 colorectal colorectal JJ cord-010027-r0tl01kq 1433 14 polyps polyp NNS cord-010027-r0tl01kq 1433 15 and and CC cord-010027-r0tl01kq 1433 16 gastrointestinal gastrointestinal JJ cord-010027-r0tl01kq 1433 17 ( ( -LRB- cord-010027-r0tl01kq 1433 18 GI gi NN cord-010027-r0tl01kq 1433 19 ) ) -RRB- cord-010027-r0tl01kq 1433 20 teaching teaching NN cord-010027-r0tl01kq 1433 21 cases case NNS cord-010027-r0tl01kq 1433 22 for for IN cord-010027-r0tl01kq 1433 23 the the DT cord-010027-r0tl01kq 1433 24 National National NNP cord-010027-r0tl01kq 1433 25 Bowl Bowl NNP cord-010027-r0tl01kq 1433 26 Screening Screening NNP cord-010027-r0tl01kq 1433 27 programme programme NN cord-010027-r0tl01kq 1433 28 ( ( -LRB- cord-010027-r0tl01kq 1433 29 BowelScreen BowelScreen NNP cord-010027-r0tl01kq 1433 30 ) ) -RRB- cord-010027-r0tl01kq 1433 31 in in IN cord-010027-r0tl01kq 1433 32 the the DT cord-010027-r0tl01kq 1433 33 Republic Republic NNP cord-010027-r0tl01kq 1433 34 of of IN cord-010027-r0tl01kq 1433 35 Ireland Ireland NNP cord-010027-r0tl01kq 1433 36 . . . cord-010027-r0tl01kq 1434 1 Methods method NNS cord-010027-r0tl01kq 1434 2 : : : cord-010027-r0tl01kq 1435 1 Suitable suitable JJ cord-010027-r0tl01kq 1435 2 internal internal JJ cord-010027-r0tl01kq 1435 3 and and CC cord-010027-r0tl01kq 1435 4 referral referral JJ cord-010027-r0tl01kq 1435 5 cases case NNS cord-010027-r0tl01kq 1435 6 were be VBD cord-010027-r0tl01kq 1435 7 identified identify VBN cord-010027-r0tl01kq 1435 8 by by IN cord-010027-r0tl01kq 1435 9 BowelScreen BowelScreen NNP cord-010027-r0tl01kq 1435 10 consultants consultant NNS cord-010027-r0tl01kq 1435 11 at at IN cord-010027-r0tl01kq 1435 12 Saint Saint NNP cord-010027-r0tl01kq 1435 13 Vincent Vincent NNP cord-010027-r0tl01kq 1435 14 's 's POS cord-010027-r0tl01kq 1435 15 University University NNP cord-010027-r0tl01kq 1435 16 Hospital Hospital NNP cord-010027-r0tl01kq 1435 17 . . . cord-010027-r0tl01kq 1436 1 These these DT cord-010027-r0tl01kq 1436 2 cases case NNS cord-010027-r0tl01kq 1436 3 were be VBD cord-010027-r0tl01kq 1436 4 subject subject JJ cord-010027-r0tl01kq 1436 5 to to IN cord-010027-r0tl01kq 1436 6 both both CC cord-010027-r0tl01kq 1436 7 internal internal JJ cord-010027-r0tl01kq 1436 8 and and CC cord-010027-r0tl01kq 1436 9 external external JJ cord-010027-r0tl01kq 1436 10 review review NN cord-010027-r0tl01kq 1436 11 , , , cord-010027-r0tl01kq 1436 12 by by IN cord-010027-r0tl01kq 1436 13 the the DT cord-010027-r0tl01kq 1436 14 Mater Mater NNP cord-010027-r0tl01kq 1436 15 Misericordiae Misericordiae NNP cord-010027-r0tl01kq 1436 16 University University NNP cord-010027-r0tl01kq 1436 17 Hospital Hospital NNP cord-010027-r0tl01kq 1436 18 , , , cord-010027-r0tl01kq 1436 19 and and CC cord-010027-r0tl01kq 1436 20 represented represent VBD cord-010027-r0tl01kq 1436 21 typical typical JJ cord-010027-r0tl01kq 1436 22 examples example NNS cord-010027-r0tl01kq 1436 23 of of IN cord-010027-r0tl01kq 1436 24 lesions lesion NNS cord-010027-r0tl01kq 1436 25 seen see VBN cord-010027-r0tl01kq 1436 26 in in IN cord-010027-r0tl01kq 1436 27 a a DT cord-010027-r0tl01kq 1436 28 National National NNP cord-010027-r0tl01kq 1436 29 Bowel Bowel NNP cord-010027-r0tl01kq 1436 30 Cancer Cancer NNP cord-010027-r0tl01kq 1436 31 screening screening NN cord-010027-r0tl01kq 1436 32 programmes programme NNS cord-010027-r0tl01kq 1436 33 ( ( -LRB- cord-010027-r0tl01kq 1436 34 e.g e.g IN cord-010027-r0tl01kq 1436 35 adenomas adenoma NNS cord-010027-r0tl01kq 1436 36 , , , cord-010027-r0tl01kq 1436 37 SSLs ssl NNS cord-010027-r0tl01kq 1436 38 , , , cord-010027-r0tl01kq 1436 39 adenomas adenoma NNS cord-010027-r0tl01kq 1436 40 with with IN cord-010027-r0tl01kq 1436 41 misplacement misplacement NN cord-010027-r0tl01kq 1436 42 , , , cord-010027-r0tl01kq 1436 43 TSAs tsa NNS cord-010027-r0tl01kq 1436 44 ) ) -RRB- cord-010027-r0tl01kq 1436 45 . . . cord-010027-r0tl01kq 1437 1 Representative representative JJ cord-010027-r0tl01kq 1437 2 slides slide NNS cord-010027-r0tl01kq 1437 3 , , , cord-010027-r0tl01kq 1437 4 including include VBG cord-010027-r0tl01kq 1437 5 immunohistochemistry immunohistochemistry NN cord-010027-r0tl01kq 1437 6 , , , cord-010027-r0tl01kq 1437 7 were be VBD cord-010027-r0tl01kq 1437 8 anonymised anonymise VBN cord-010027-r0tl01kq 1437 9 and and CC cord-010027-r0tl01kq 1437 10 digitised digitise VBN cord-010027-r0tl01kq 1437 11 using use VBG cord-010027-r0tl01kq 1437 12 the the DT cord-010027-r0tl01kq 1437 13 Hamamatsu Hamamatsu NNP cord-010027-r0tl01kq 1437 14 NanoZoomer NanoZoomer NNP cord-010027-r0tl01kq 1437 15 Digital Digital NNP cord-010027-r0tl01kq 1437 16 Pathology Pathology NNP cord-010027-r0tl01kq 1437 17 ( ( -LRB- cord-010027-r0tl01kq 1437 18 NDP NDP NNP cord-010027-r0tl01kq 1437 19 ) ) -RRB- cord-010027-r0tl01kq 1437 20 whole whole JJ cord-010027-r0tl01kq 1437 21 slide slide NN cord-010027-r0tl01kq 1437 22 scanner scanner NN cord-010027-r0tl01kq 1437 23 platform platform NN cord-010027-r0tl01kq 1437 24 and and CC cord-010027-r0tl01kq 1437 25 associated associated JJ cord-010027-r0tl01kq 1437 26 software software NN cord-010027-r0tl01kq 1437 27 packages package NNS cord-010027-r0tl01kq 1437 28 ( ( -LRB- cord-010027-r0tl01kq 1437 29 NDP NDP NNP cord-010027-r0tl01kq 1437 30 scan scan NN cord-010027-r0tl01kq 1437 31 and and CC cord-010027-r0tl01kq 1437 32 view view VBP cord-010027-r0tl01kq 1437 33 ) ) -RRB- cord-010027-r0tl01kq 1437 34 . . . cord-010027-r0tl01kq 1438 1 Whole whole JJ cord-010027-r0tl01kq 1438 2 slide slide NN cord-010027-r0tl01kq 1438 3 images image NNS cord-010027-r0tl01kq 1438 4 ( ( -LRB- cord-010027-r0tl01kq 1438 5 WSI WSI NNP cord-010027-r0tl01kq 1438 6 ) ) -RRB- cord-010027-r0tl01kq 1438 7 were be VBD cord-010027-r0tl01kq 1438 8 uploaded upload VBN cord-010027-r0tl01kq 1438 9 to to TO cord-010027-r0tl01kq 1438 10 secure secure VB cord-010027-r0tl01kq 1438 11 cloud cloud NN cord-010027-r0tl01kq 1438 12 storage storage NN cord-010027-r0tl01kq 1438 13 using use VBG cord-010027-r0tl01kq 1438 14 a a DT cord-010027-r0tl01kq 1438 15 generic generic JJ cord-010027-r0tl01kq 1438 16 file file NN cord-010027-r0tl01kq 1438 17 transfer transfer NN cord-010027-r0tl01kq 1438 18 protocol protocol NN cord-010027-r0tl01kq 1438 19 program program NN cord-010027-r0tl01kq 1438 20 . . . cord-010027-r0tl01kq 1439 1 WSI WSI NNP cord-010027-r0tl01kq 1439 2 were be VBD cord-010027-r0tl01kq 1439 3 collated collate VBN cord-010027-r0tl01kq 1439 4 into into IN cord-010027-r0tl01kq 1439 5 18 18 CD cord-010027-r0tl01kq 1439 6 cases case NNS cord-010027-r0tl01kq 1439 7 and and CC cord-010027-r0tl01kq 1439 8 accessible accessible JJ cord-010027-r0tl01kq 1439 9 via via IN cord-010027-r0tl01kq 1439 10 the the DT cord-010027-r0tl01kq 1439 11 PathXL PathXL NNP cord-010027-r0tl01kq 1439 12 gateway gateway NN cord-010027-r0tl01kq 1439 13 ( ( -LRB- cord-010027-r0tl01kq 1439 14 pathXL.co.uk pathXL.co.uk NNP cord-010027-r0tl01kq 1439 15 ) ) -RRB- cord-010027-r0tl01kq 1439 16 by by IN cord-010027-r0tl01kq 1439 17 approved approve VBN cord-010027-r0tl01kq 1439 18 users user NNS cord-010027-r0tl01kq 1439 19 via via IN cord-010027-r0tl01kq 1439 20 an an DT cord-010027-r0tl01kq 1439 21 online online JJ cord-010027-r0tl01kq 1439 22 case case NN cord-010027-r0tl01kq 1439 23 referral referral NN cord-010027-r0tl01kq 1439 24 and and CC cord-010027-r0tl01kq 1439 25 reporting reporting NN cord-010027-r0tl01kq 1439 26 system system NN cord-010027-r0tl01kq 1439 27 . . . cord-010027-r0tl01kq 1440 1 Users user NNS cord-010027-r0tl01kq 1440 2 were be VBD cord-010027-r0tl01kq 1440 3 notified notify VBN cord-010027-r0tl01kq 1440 4 of of IN cord-010027-r0tl01kq 1440 5 pending pende VBG cord-010027-r0tl01kq 1440 6 cases case NNS cord-010027-r0tl01kq 1440 7 via via IN cord-010027-r0tl01kq 1440 8 email email NN cord-010027-r0tl01kq 1440 9 and and CC cord-010027-r0tl01kq 1440 10 the the DT cord-010027-r0tl01kq 1440 11 viewing viewing NN cord-010027-r0tl01kq 1440 12 of of IN cord-010027-r0tl01kq 1440 13 WSI WSI NNP cord-010027-r0tl01kq 1440 14 occurred occur VBD cord-010027-r0tl01kq 1440 15 within within IN cord-010027-r0tl01kq 1440 16 the the DT cord-010027-r0tl01kq 1440 17 user user NN cord-010027-r0tl01kq 1440 18 's 's POS cord-010027-r0tl01kq 1440 19 web web NN cord-010027-r0tl01kq 1440 20 browser browser NN cord-010027-r0tl01kq 1440 21 utilising utilise VBG cord-010027-r0tl01kq 1440 22 an an DT cord-010027-r0tl01kq 1440 23 online online JJ cord-010027-r0tl01kq 1440 24 version version NN cord-010027-r0tl01kq 1440 25 of of IN cord-010027-r0tl01kq 1440 26 NDP NDP NNP cord-010027-r0tl01kq 1440 27 view view NN cord-010027-r0tl01kq 1440 28 program program NN cord-010027-r0tl01kq 1440 29 and and CC cord-010027-r0tl01kq 1440 30 did do VBD cord-010027-r0tl01kq 1440 31 not not RB cord-010027-r0tl01kq 1440 32 require require VB cord-010027-r0tl01kq 1440 33 local local JJ cord-010027-r0tl01kq 1440 34 use use NN cord-010027-r0tl01kq 1440 35 of of IN cord-010027-r0tl01kq 1440 36 propriety propriety NN cord-010027-r0tl01kq 1440 37 software software NN cord-010027-r0tl01kq 1440 38 . . . cord-010027-r0tl01kq 1441 1 Each each DT cord-010027-r0tl01kq 1441 2 case case NN cord-010027-r0tl01kq 1441 3 was be VBD cord-010027-r0tl01kq 1441 4 referred refer VBN cord-010027-r0tl01kq 1441 5 across across IN cord-010027-r0tl01kq 1441 6 the the DT cord-010027-r0tl01kq 1441 7 two two CD cord-010027-r0tl01kq 1441 8 participating participate VBG cord-010027-r0tl01kq 1441 9 sites site NNS cord-010027-r0tl01kq 1441 10 and and CC cord-010027-r0tl01kq 1441 11 scored score VBD cord-010027-r0tl01kq 1441 12 in in IN cord-010027-r0tl01kq 1441 13 four four CD cord-010027-r0tl01kq 1441 14 areas area NNS cord-010027-r0tl01kq 1441 15 ; ; : cord-010027-r0tl01kq 1441 16 diagnosis diagnosis NN cord-010027-r0tl01kq 1441 17 concordance concordance NN cord-010027-r0tl01kq 1441 18 , , , cord-010027-r0tl01kq 1441 19 quality quality NN cord-010027-r0tl01kq 1441 20 of of IN cord-010027-r0tl01kq 1441 21 WSI WSI NNP cord-010027-r0tl01kq 1441 22 , , , cord-010027-r0tl01kq 1441 23 web web NN cord-010027-r0tl01kq 1441 24 interface interface NN cord-010027-r0tl01kq 1441 25 and and CC cord-010027-r0tl01kq 1441 26 the the DT cord-010027-r0tl01kq 1441 27 online online JJ cord-010027-r0tl01kq 1441 28 referral referral NN cord-010027-r0tl01kq 1441 29 and and CC cord-010027-r0tl01kq 1441 30 reporting reporting NN cord-010027-r0tl01kq 1441 31 system system NN cord-010027-r0tl01kq 1441 32 . . . cord-010027-r0tl01kq 1442 1 Conclusion conclusion NN cord-010027-r0tl01kq 1442 2 : : : cord-010027-r0tl01kq 1442 3 With with IN cord-010027-r0tl01kq 1442 4 the the DT cord-010027-r0tl01kq 1442 5 maturation maturation NN cord-010027-r0tl01kq 1442 6 of of IN cord-010027-r0tl01kq 1442 7 technology technology NN cord-010027-r0tl01kq 1442 8 involved involve VBN cord-010027-r0tl01kq 1442 9 in in IN cord-010027-r0tl01kq 1442 10 digital digital JJ cord-010027-r0tl01kq 1442 11 microscopy microscopy NNP cord-010027-r0tl01kq 1442 12 a a DT cord-010027-r0tl01kq 1442 13 digital digital JJ cord-010027-r0tl01kq 1442 14 archive archive NN cord-010027-r0tl01kq 1442 15 program program NN cord-010027-r0tl01kq 1442 16 is be VBZ cord-010027-r0tl01kq 1442 17 now now RB cord-010027-r0tl01kq 1442 18 a a DT cord-010027-r0tl01kq 1442 19 feasible feasible JJ cord-010027-r0tl01kq 1442 20 approach approach NN cord-010027-r0tl01kq 1442 21 to to IN cord-010027-r0tl01kq 1442 22 the the DT cord-010027-r0tl01kq 1442 23 standardisation standardisation NN cord-010027-r0tl01kq 1442 24 of of IN cord-010027-r0tl01kq 1442 25 diagnosis diagnosis NN cord-010027-r0tl01kq 1442 26 and and CC cord-010027-r0tl01kq 1442 27 a a DT cord-010027-r0tl01kq 1442 28 useful useful JJ cord-010027-r0tl01kq 1442 29 adjunct adjunct NN cord-010027-r0tl01kq 1442 30 to to IN cord-010027-r0tl01kq 1442 31 traditional traditional JJ cord-010027-r0tl01kq 1442 32 optical optical JJ cord-010027-r0tl01kq 1442 33 microscopy microscopy NN cord-010027-r0tl01kq 1442 34 in in IN cord-010027-r0tl01kq 1442 35 education education NN cord-010027-r0tl01kq 1442 36 within within IN cord-010027-r0tl01kq 1442 37 the the DT cord-010027-r0tl01kq 1442 38 National National NNP cord-010027-r0tl01kq 1442 39 Bowel Bowel NNP cord-010027-r0tl01kq 1442 40 Screening Screening NNP cord-010027-r0tl01kq 1442 41 programme programme NN cord-010027-r0tl01kq 1442 42 . . . cord-010027-r0tl01kq 1443 1 Conclusions conclusion NNS cord-010027-r0tl01kq 1443 2 : : : cord-010027-r0tl01kq 1444 1 A a DT cord-010027-r0tl01kq 1444 2 committed committed JJ cord-010027-r0tl01kq 1444 3 and and CC cord-010027-r0tl01kq 1444 4 conscientious conscientious JJ cord-010027-r0tl01kq 1444 5 BMS BMS NNP cord-010027-r0tl01kq 1444 6 can can MD cord-010027-r0tl01kq 1444 7 learn learn VB cord-010027-r0tl01kq 1444 8 how how WRB cord-010027-r0tl01kq 1444 9 to to TO cord-010027-r0tl01kq 1444 10 report report VB cord-010027-r0tl01kq 1444 11 histopathology histopathology NN cord-010027-r0tl01kq 1444 12 cases case NNS cord-010027-r0tl01kq 1444 13 . . . cord-010027-r0tl01kq 1445 1 However however RB cord-010027-r0tl01kq 1445 2 , , , cord-010027-r0tl01kq 1445 3 if if IN cord-010027-r0tl01kq 1445 4 this this DT cord-010027-r0tl01kq 1445 5 is be VBZ cord-010027-r0tl01kq 1445 6 to to TO cord-010027-r0tl01kq 1445 7 be be VB cord-010027-r0tl01kq 1445 8 achieved achieve VBN cord-010027-r0tl01kq 1445 9 , , , cord-010027-r0tl01kq 1445 10 the the DT cord-010027-r0tl01kq 1445 11 department department NN cord-010027-r0tl01kq 1445 12 in in IN cord-010027-r0tl01kq 1445 13 which which WDT cord-010027-r0tl01kq 1445 14 he -PRON- PRP cord-010027-r0tl01kq 1445 15 or or CC cord-010027-r0tl01kq 1445 16 she -PRON- PRP cord-010027-r0tl01kq 1445 17 works work VBZ cord-010027-r0tl01kq 1445 18 must must MD cord-010027-r0tl01kq 1445 19 also also RB cord-010027-r0tl01kq 1445 20 be be VB cord-010027-r0tl01kq 1445 21 committed commit VBN cord-010027-r0tl01kq 1445 22 and and CC cord-010027-r0tl01kq 1445 23 supportive supportive JJ cord-010027-r0tl01kq 1445 24 . . . cord-010027-r0tl01kq 1446 1 Carcinoid Carcinoid NNP cord-010027-r0tl01kq 1446 2 Tumour tumour NN cord-010027-r0tl01kq 1446 3 of of IN cord-010027-r0tl01kq 1446 4 the the DT cord-010027-r0tl01kq 1446 5 Appendix Appendix NNP cord-010027-r0tl01kq 1446 6 : : : cord-010027-r0tl01kq 1447 1 A a DT cord-010027-r0tl01kq 1447 2 Case Case NNP cord-010027-r0tl01kq 1447 3 Report report NN cord-010027-r0tl01kq 1447 4 P P NNP cord-010027-r0tl01kq 1447 5 AAE AAE NNP cord-010027-r0tl01kq 1447 6 Shalaby Shalaby NNPS cord-010027-r0tl01kq 1447 7 ; ; : cord-010027-r0tl01kq 1447 8 P P NNP cord-010027-r0tl01kq 1447 9 AAE AAE NNP cord-010027-r0tl01kq 1447 10 Shalaby Shalaby NNP cord-010027-r0tl01kq 1447 11 A a DT cord-010027-r0tl01kq 1447 12 case case NN cord-010027-r0tl01kq 1447 13 of of IN cord-010027-r0tl01kq 1447 14 a a DT cord-010027-r0tl01kq 1447 15 24 24 CD cord-010027-r0tl01kq 1447 16 years year NNS cord-010027-r0tl01kq 1447 17 male male NN cord-010027-r0tl01kq 1447 18 operated operate VBD cord-010027-r0tl01kq 1447 19 on on IN cord-010027-r0tl01kq 1447 20 for for IN cord-010027-r0tl01kq 1447 21 acute acute JJ cord-010027-r0tl01kq 1447 22 appendicitis appendicitis NN cord-010027-r0tl01kq 1447 23 and and CC cord-010027-r0tl01kq 1447 24 an an DT cord-010027-r0tl01kq 1447 25 incidental incidental JJ cord-010027-r0tl01kq 1447 26 finding finding NN cord-010027-r0tl01kq 1447 27 of of IN cord-010027-r0tl01kq 1447 28 a a DT cord-010027-r0tl01kq 1447 29 carcinoid carcinoid NN cord-010027-r0tl01kq 1447 30 tumour tumour NN cord-010027-r0tl01kq 1447 31 at at IN cord-010027-r0tl01kq 1447 32 the the DT cord-010027-r0tl01kq 1447 33 tip tip NN cord-010027-r0tl01kq 1447 34 is be VBZ cord-010027-r0tl01kq 1447 35 reported report VBN cord-010027-r0tl01kq 1447 36 . . . cord-010027-r0tl01kq 1448 1 The the DT cord-010027-r0tl01kq 1448 2 tumour tumour NN cord-010027-r0tl01kq 1448 3 was be VBD cord-010027-r0tl01kq 1448 4 less less JJR cord-010027-r0tl01kq 1448 5 than than IN cord-010027-r0tl01kq 1448 6 2 2 CD cord-010027-r0tl01kq 1448 7 cm cm NNS cord-010027-r0tl01kq 1448 8 in in IN cord-010027-r0tl01kq 1448 9 greatest great JJS cord-010027-r0tl01kq 1448 10 dimension dimension NN cord-010027-r0tl01kq 1449 1 but but CC cord-010027-r0tl01kq 1449 2 it -PRON- PRP cord-010027-r0tl01kq 1449 3 infiltrates infiltrate VBZ cord-010027-r0tl01kq 1449 4 through through IN cord-010027-r0tl01kq 1449 5 the the DT cord-010027-r0tl01kq 1449 6 wall wall NN cord-010027-r0tl01kq 1449 7 of of IN cord-010027-r0tl01kq 1449 8 the the DT cord-010027-r0tl01kq 1449 9 appendix appendix NN cord-010027-r0tl01kq 1449 10 into into IN cord-010027-r0tl01kq 1449 11 the the DT cord-010027-r0tl01kq 1449 12 surrounding surround VBG cord-010027-r0tl01kq 1449 13 fat fat NN cord-010027-r0tl01kq 1449 14 . . . cord-010027-r0tl01kq 1450 1 It -PRON- PRP cord-010027-r0tl01kq 1450 2 stains stain VBZ cord-010027-r0tl01kq 1450 3 positive positive JJ cord-010027-r0tl01kq 1450 4 for for IN cord-010027-r0tl01kq 1450 5 the the DT cord-010027-r0tl01kq 1450 6 neuroendocrine neuroendocrine JJ cord-010027-r0tl01kq 1450 7 markers marker NNS cord-010027-r0tl01kq 1450 8 . . . cord-010027-r0tl01kq 1451 1 Carcinoid carcinoid NN cord-010027-r0tl01kq 1451 2 tumour tumour NN cord-010027-r0tl01kq 1451 3 of of IN cord-010027-r0tl01kq 1451 4 the the DT cord-010027-r0tl01kq 1451 5 appendix appendix NN cord-010027-r0tl01kq 1451 6 is be VBZ cord-010027-r0tl01kq 1451 7 unusual unusual JJ cord-010027-r0tl01kq 1451 8 , , , cord-010027-r0tl01kq 1451 9 but but CC cord-010027-r0tl01kq 1451 10 it -PRON- PRP cord-010027-r0tl01kq 1451 11 has have VBZ cord-010027-r0tl01kq 1451 12 to to TO cord-010027-r0tl01kq 1451 13 be be VB cord-010027-r0tl01kq 1451 14 looked look VBN cord-010027-r0tl01kq 1451 15 for for IN cord-010027-r0tl01kq 1451 16 during during IN cord-010027-r0tl01kq 1451 17 examination examination NN cord-010027-r0tl01kq 1451 18 of of IN cord-010027-r0tl01kq 1451 19 appendectomy appendectomy NN cord-010027-r0tl01kq 1451 20 specimens specimen NNS cord-010027-r0tl01kq 1451 21 done do VBN cord-010027-r0tl01kq 1451 22 for for IN cord-010027-r0tl01kq 1451 23 appendicitis appendicitis NN cord-010027-r0tl01kq 1451 24 ( ( -LRB- cord-010027-r0tl01kq 1451 25 0.5 0.5 CD cord-010027-r0tl01kq 1451 26 % % NN cord-010027-r0tl01kq 1451 27 ) ) -RRB- cord-010027-r0tl01kq 1451 28 . . . cord-010027-r0tl01kq 1452 1 Women woman NNS cord-010027-r0tl01kq 1452 2 are be VBP cord-010027-r0tl01kq 1452 3 more more RBR cord-010027-r0tl01kq 1452 4 frequently frequently RB cord-010027-r0tl01kq 1452 5 affected affect VBN cord-010027-r0tl01kq 1452 6 than than IN cord-010027-r0tl01kq 1452 7 men man NNS cord-010027-r0tl01kq 1452 8 ( ( -LRB- cord-010027-r0tl01kq 1452 9 3:1 3:1 CD cord-010027-r0tl01kq 1452 10 ) ) -RRB- cord-010027-r0tl01kq 1452 11 and and CC cord-010027-r0tl01kq 1452 12 the the DT cord-010027-r0tl01kq 1452 13 tumour tumour NN cord-010027-r0tl01kq 1452 14 is be VBZ cord-010027-r0tl01kq 1452 15 usually usually RB cord-010027-r0tl01kq 1452 16 small small JJ cord-010027-r0tl01kq 1452 17 less less JJR cord-010027-r0tl01kq 1452 18 than than IN cord-010027-r0tl01kq 1452 19 1 1 CD cord-010027-r0tl01kq 1452 20 cm cm NNS cord-010027-r0tl01kq 1452 21 in in IN cord-010027-r0tl01kq 1452 22 diameter diameter NN cord-010027-r0tl01kq 1452 23 and and CC cord-010027-r0tl01kq 1452 24 frequently frequently RB cord-010027-r0tl01kq 1452 25 located locate VBN cord-010027-r0tl01kq 1452 26 at at IN cord-010027-r0tl01kq 1452 27 the the DT cord-010027-r0tl01kq 1452 28 tip tip NN cord-010027-r0tl01kq 1452 29 . . . cord-010027-r0tl01kq 1453 1 It -PRON- PRP cord-010027-r0tl01kq 1453 2 is be VBZ cord-010027-r0tl01kq 1453 3 usually usually RB cord-010027-r0tl01kq 1453 4 diagnosed diagnose VBN cord-010027-r0tl01kq 1453 5 incidentally incidentally RB cord-010027-r0tl01kq 1453 6 after after IN cord-010027-r0tl01kq 1453 7 an an DT cord-010027-r0tl01kq 1453 8 operation operation NN cord-010027-r0tl01kq 1453 9 for for IN cord-010027-r0tl01kq 1453 10 acute acute JJ cord-010027-r0tl01kq 1453 11 appendicitis appendicitis NN cord-010027-r0tl01kq 1453 12 and and CC cord-010027-r0tl01kq 1453 13 sometimes sometimes RB cord-010027-r0tl01kq 1453 14 during during IN cord-010027-r0tl01kq 1453 15 other other JJ cord-010027-r0tl01kq 1453 16 procedures procedure NNS cord-010027-r0tl01kq 1453 17 ( ( -LRB- cord-010027-r0tl01kq 1453 18 colectomy colectomy JJ cord-010027-r0tl01kq 1453 19 , , , cord-010027-r0tl01kq 1453 20 cholecystectomy cholecystectomy NN cord-010027-r0tl01kq 1453 21 and and CC cord-010027-r0tl01kq 1453 22 others other NNS cord-010027-r0tl01kq 1453 23 ) ) -RRB- cord-010027-r0tl01kq 1453 24 . . . cord-010027-r0tl01kq 1454 1 The the DT cord-010027-r0tl01kq 1454 2 tumour tumour NN cord-010027-r0tl01kq 1454 3 rarely rarely RB cord-010027-r0tl01kq 1454 4 metastasis metastasis NN cord-010027-r0tl01kq 1454 5 to to IN cord-010027-r0tl01kq 1454 6 the the DT cord-010027-r0tl01kq 1454 7 liver liver NN cord-010027-r0tl01kq 1454 8 and and CC cord-010027-r0tl01kq 1454 9 this this DT cord-010027-r0tl01kq 1454 10 is be VBZ cord-010027-r0tl01kq 1454 11 usually usually RB cord-010027-r0tl01kq 1454 12 related relate VBN cord-010027-r0tl01kq 1454 13 to to IN cord-010027-r0tl01kq 1454 14 the the DT cord-010027-r0tl01kq 1454 15 tumour tumour NN cord-010027-r0tl01kq 1454 16 diameter diameter NN cord-010027-r0tl01kq 1454 17 ) ) -RRB- cord-010027-r0tl01kq 1454 18 and and CC cord-010027-r0tl01kq 1454 19 can can MD cord-010027-r0tl01kq 1454 20 cause cause VB cord-010027-r0tl01kq 1454 21 a a DT cord-010027-r0tl01kq 1454 22 " " `` cord-010027-r0tl01kq 1454 23 carcinoid carcinoid NN cord-010027-r0tl01kq 1454 24 syndrome syndrome NN cord-010027-r0tl01kq 1454 25 " " '' cord-010027-r0tl01kq 1454 26 : : : cord-010027-r0tl01kq 1454 27 flush flush VB cord-010027-r0tl01kq 1454 28 , , , cord-010027-r0tl01kq 1454 29 diarrhea diarrhea NN cord-010027-r0tl01kq 1454 30 bronchoconstriction bronchoconstriction NN cord-010027-r0tl01kq 1454 31 , , , cord-010027-r0tl01kq 1454 32 cardiac cardiac JJ cord-010027-r0tl01kq 1454 33 valve valve NN cord-010027-r0tl01kq 1454 34 disease disease NN cord-010027-r0tl01kq 1454 35 . . . cord-010027-r0tl01kq 1455 1 Diagnosis diagnosis NN cord-010027-r0tl01kq 1455 2 is be VBZ cord-010027-r0tl01kq 1455 3 made make VBN cord-010027-r0tl01kq 1455 4 by by IN cord-010027-r0tl01kq 1455 5 the the DT cord-010027-r0tl01kq 1455 6 pathologist pathologist NN cord-010027-r0tl01kq 1455 7 and and CC cord-010027-r0tl01kq 1455 8 staging staging NN cord-010027-r0tl01kq 1455 9 by by IN cord-010027-r0tl01kq 1455 10 conventional conventional JJ cord-010027-r0tl01kq 1455 11 radiologic radiologic JJ cord-010027-r0tl01kq 1455 12 procedures procedure NNS cord-010027-r0tl01kq 1455 13 ( ( -LRB- cord-010027-r0tl01kq 1455 14 TAC TAC NNP cord-010027-r0tl01kq 1455 15 , , , cord-010027-r0tl01kq 1455 16 US US NNP cord-010027-r0tl01kq 1455 17 ) ) -RRB- cord-010027-r0tl01kq 1455 18 , , , cord-010027-r0tl01kq 1455 19 dosage dosage NN cord-010027-r0tl01kq 1455 20 of of IN cord-010027-r0tl01kq 1455 21 neuroendocrine neuroendocrine JJ cord-010027-r0tl01kq 1455 22 mediators mediator NNS cord-010027-r0tl01kq 1455 23 such such JJ cord-010027-r0tl01kq 1455 24 as as IN cord-010027-r0tl01kq 1455 25 24 24 CD cord-010027-r0tl01kq 1455 26 hours hour NNS cord-010027-r0tl01kq 1455 27 urinary urinary JJ cord-010027-r0tl01kq 1455 28 5-HIAA 5-hiaa CD cord-010027-r0tl01kq 1455 29 . . . cord-010027-r0tl01kq 1456 1 Simple simple JJ cord-010027-r0tl01kq 1456 2 appendectomy appendectomy NN cord-010027-r0tl01kq 1456 3 is be VBZ cord-010027-r0tl01kq 1456 4 adequate adequate JJ cord-010027-r0tl01kq 1456 5 treatment treatment NN cord-010027-r0tl01kq 1456 6 for for IN cord-010027-r0tl01kq 1456 7 appendicular appendicular NNP cord-010027-r0tl01kq 1456 8 carcinoids carcinoids NNP cord-010027-r0tl01kq 1456 9 less less JJR cord-010027-r0tl01kq 1456 10 than than IN cord-010027-r0tl01kq 1456 11 1 1 CD cord-010027-r0tl01kq 1456 12 cm cm NNS cord-010027-r0tl01kq 1456 13 in in IN cord-010027-r0tl01kq 1456 14 diameter diameter NN cord-010027-r0tl01kq 1456 15 . . . cord-010027-r0tl01kq 1457 1 Adequate adequate JJ cord-010027-r0tl01kq 1457 2 treatment treatment NN cord-010027-r0tl01kq 1457 3 for for IN cord-010027-r0tl01kq 1457 4 tumours tumour NNS cord-010027-r0tl01kq 1458 1 greater great JJR cord-010027-r0tl01kq 1458 2 than than IN cord-010027-r0tl01kq 1458 3 2 2 CD cord-010027-r0tl01kq 1458 4 cm cm NN cord-010027-r0tl01kq 1458 5 is be VBZ cord-010027-r0tl01kq 1458 6 right right JJ cord-010027-r0tl01kq 1458 7 hemicolectomy hemicolectomy NN cord-010027-r0tl01kq 1458 8 . . . cord-010027-r0tl01kq 1459 1 The the DT cord-010027-r0tl01kq 1459 2 mangement mangement NN cord-010027-r0tl01kq 1459 3 of of IN cord-010027-r0tl01kq 1459 4 tumours tumour NNS cord-010027-r0tl01kq 1459 5 1 1 CD cord-010027-r0tl01kq 1459 6 to to IN cord-010027-r0tl01kq 1459 7 2 2 CD cord-010027-r0tl01kq 1459 8 cm cm NN cord-010027-r0tl01kq 1459 9 range range NN cord-010027-r0tl01kq 1459 10 is be VBZ cord-010027-r0tl01kq 1459 11 controverisal controverisal VBN cord-010027-r0tl01kq 1459 12 , , , cord-010027-r0tl01kq 1459 13 but but CC cord-010027-r0tl01kq 1459 14 generally generally RB cord-010027-r0tl01kq 1459 15 , , , cord-010027-r0tl01kq 1459 16 appendectomy appendectomy NN cord-010027-r0tl01kq 1459 17 alone alone RB cord-010027-r0tl01kq 1459 18 is be VBZ cord-010027-r0tl01kq 1459 19 sufficient sufficient JJ cord-010027-r0tl01kq 1459 20 except except IN cord-010027-r0tl01kq 1459 21 when when WRB cord-010027-r0tl01kq 1459 22 meso meso NN cord-010027-r0tl01kq 1459 23 - - HYPH cord-010027-r0tl01kq 1459 24 appendix appendix NNP cord-010027-r0tl01kq 1459 25 is be VBZ cord-010027-r0tl01kq 1459 26 invaded invade VBN cord-010027-r0tl01kq 1459 27 . . . cord-010027-r0tl01kq 1460 1 Carcinoid carcinoid NN cord-010027-r0tl01kq 1460 2 tumour tumour NN cord-010027-r0tl01kq 1460 3 of of IN cord-010027-r0tl01kq 1460 4 the the DT cord-010027-r0tl01kq 1460 5 appendix appendix NN cord-010027-r0tl01kq 1460 6 has have VBZ cord-010027-r0tl01kq 1460 7 a a DT cord-010027-r0tl01kq 1460 8 good good JJ cord-010027-r0tl01kq 1460 9 prognosis prognosis NN cord-010027-r0tl01kq 1460 10 with with IN cord-010027-r0tl01kq 1460 11 a a DT cord-010027-r0tl01kq 1460 12 5-year 5-year CD cord-010027-r0tl01kq 1460 13 - - HYPH cord-010027-r0tl01kq 1460 14 survival survival NN cord-010027-r0tl01kq 1460 15 rate rate NN cord-010027-r0tl01kq 1460 16 , , , cord-010027-r0tl01kq 1460 17 of of IN cord-010027-r0tl01kq 1460 18 85 85 CD cord-010027-r0tl01kq 1460 19 - - SYM cord-010027-r0tl01kq 1460 20 100 100 CD cord-010027-r0tl01kq 1460 21 % % NN cord-010027-r0tl01kq 1460 22 . . . cord-010027-r0tl01kq 1461 1 The the DT cord-010027-r0tl01kq 1461 2 Prevalence prevalence NN cord-010027-r0tl01kq 1461 3 of of IN cord-010027-r0tl01kq 1461 4 Epithelial epithelial JJ cord-010027-r0tl01kq 1461 5 Changes change NNS cord-010027-r0tl01kq 1461 6 in in IN cord-010027-r0tl01kq 1461 7 Helicobacter Helicobacter NNP cord-010027-r0tl01kq 1461 8 Pylori Pylori NNP cord-010027-r0tl01kq 1461 9 - - HYPH cord-010027-r0tl01kq 1461 10 Associated Associated NNP cord-010027-r0tl01kq 1461 11 Gastritis Gastritis NNP cord-010027-r0tl01kq 1461 12 in in IN cord-010027-r0tl01kq 1461 13 Oman Oman NNP cord-010027-r0tl01kq 1461 14 : : : cord-010027-r0tl01kq 1462 1 A a DT cord-010027-r0tl01kq 1462 2 Retrospective Retrospective NNP cord-010027-r0tl01kq 1462 3 Study Study NNP cord-010027-r0tl01kq 1462 4 P P NNP cord-010027-r0tl01kq 1462 5 AAE AAE NNP cord-010027-r0tl01kq 1462 6 Shalaby Shalaby NNPS cord-010027-r0tl01kq 1462 7 ; ; : cord-010027-r0tl01kq 1462 8 A a DT cord-010027-r0tl01kq 1462 9 Al Al NNP cord-010027-r0tl01kq 1462 10 Saadi Saadi NNP cord-010027-r0tl01kq 1463 1 There there EX cord-010027-r0tl01kq 1463 2 is be VBZ cord-010027-r0tl01kq 1463 3 Strong strong JJ cord-010027-r0tl01kq 1463 4 association association NN cord-010027-r0tl01kq 1463 5 between between IN cord-010027-r0tl01kq 1463 6 H. H. NNP cord-010027-r0tl01kq 1463 7 pylori pylori VB cord-010027-r0tl01kq 1463 8 gastric gastric JJ cord-010027-r0tl01kq 1463 9 infection infection NN cord-010027-r0tl01kq 1463 10 and and CC cord-010027-r0tl01kq 1463 11 epithelial epithelial JJ cord-010027-r0tl01kq 1463 12 changes change NNS cord-010027-r0tl01kq 1463 13 and and CC cord-010027-r0tl01kq 1463 14 progression progression NN cord-010027-r0tl01kq 1463 15 to to IN cord-010027-r0tl01kq 1463 16 cancer cancer NN cord-010027-r0tl01kq 1463 17 . . . cord-010027-r0tl01kq 1464 1 It -PRON- PRP cord-010027-r0tl01kq 1464 2 has have VBZ cord-010027-r0tl01kq 1464 3 been be VBN cord-010027-r0tl01kq 1464 4 shown show VBN cord-010027-r0tl01kq 1464 5 that that IN cord-010027-r0tl01kq 1464 6 H h NN cord-010027-r0tl01kq 1464 7 pylori pylori NN cord-010027-r0tl01kq 1464 8 infection infection NN cord-010027-r0tl01kq 1464 9 is be VBZ cord-010027-r0tl01kq 1464 10 strongly strongly RB cord-010027-r0tl01kq 1464 11 associated associate VBN cord-010027-r0tl01kq 1464 12 with with IN cord-010027-r0tl01kq 1464 13 high high JJ cord-010027-r0tl01kq 1464 14 proliferative proliferative JJ cord-010027-r0tl01kq 1464 15 activity activity NN cord-010027-r0tl01kq 1464 16 and and CC cord-010027-r0tl01kq 1464 17 it -PRON- PRP cord-010027-r0tl01kq 1464 18 could could MD cord-010027-r0tl01kq 1464 19 be be VB cord-010027-r0tl01kq 1464 20 a a DT cord-010027-r0tl01kq 1464 21 risk risk NN cord-010027-r0tl01kq 1464 22 of of IN cord-010027-r0tl01kq 1464 23 initial initial JJ cord-010027-r0tl01kq 1464 24 step step NN cord-010027-r0tl01kq 1464 25 of of IN cord-010027-r0tl01kq 1464 26 gastric gastric JJ cord-010027-r0tl01kq 1464 27 carcinogenesis carcinogenesis NN cord-010027-r0tl01kq 1464 28 . . . cord-010027-r0tl01kq 1465 1 The the DT cord-010027-r0tl01kq 1465 2 aim aim NN cord-010027-r0tl01kq 1465 3 of of IN cord-010027-r0tl01kq 1465 4 this this DT cord-010027-r0tl01kq 1465 5 study study NN cord-010027-r0tl01kq 1465 6 was be VBD cord-010027-r0tl01kq 1465 7 to to TO cord-010027-r0tl01kq 1465 8 examine examine VB cord-010027-r0tl01kq 1465 9 the the DT cord-010027-r0tl01kq 1465 10 association association NN cord-010027-r0tl01kq 1465 11 between between IN cord-010027-r0tl01kq 1465 12 epithelial epithelial JJ cord-010027-r0tl01kq 1465 13 changes change NNS cord-010027-r0tl01kq 1465 14 in in IN cord-010027-r0tl01kq 1465 15 the the DT cord-010027-r0tl01kq 1465 16 gastric gastric JJ cord-010027-r0tl01kq 1465 17 mucosa mucosa JJ cord-010027-r0tl01kq 1465 18 and and CC cord-010027-r0tl01kq 1465 19 gastric gastric JJ cord-010027-r0tl01kq 1465 20 H h NN cord-010027-r0tl01kq 1465 21 pylori pylori NN cord-010027-r0tl01kq 1465 22 infection infection NN cord-010027-r0tl01kq 1465 23 in in IN cord-010027-r0tl01kq 1465 24 Oman Oman NNP cord-010027-r0tl01kq 1465 25 by by IN cord-010027-r0tl01kq 1465 26 retrospective retrospective JJ cord-010027-r0tl01kq 1465 27 examination examination NN cord-010027-r0tl01kq 1465 28 of of IN cord-010027-r0tl01kq 1465 29 the the DT cord-010027-r0tl01kq 1465 30 gastric gastric JJ cord-010027-r0tl01kq 1465 31 biopsies biopsy NNS cord-010027-r0tl01kq 1465 32 for for IN cord-010027-r0tl01kq 1465 33 patients patient NNS cord-010027-r0tl01kq 1465 34 presented present VBN cord-010027-r0tl01kq 1465 35 to to IN cord-010027-r0tl01kq 1465 36 Sultan Sultan NNP cord-010027-r0tl01kq 1465 37 Qaboos Qaboos NNP cord-010027-r0tl01kq 1465 38 University University NNP cord-010027-r0tl01kq 1465 39 hospital hospital NN cord-010027-r0tl01kq 1465 40 ( ( -LRB- cord-010027-r0tl01kq 1465 41 SQUH SQUH NNP cord-010027-r0tl01kq 1465 42 ) ) -RRB- cord-010027-r0tl01kq 1465 43 in in IN cord-010027-r0tl01kq 1465 44 2013 2013 CD cord-010027-r0tl01kq 1465 45 . . . cord-010027-r0tl01kq 1466 1 A a DT cord-010027-r0tl01kq 1466 2 total total NN cord-010027-r0tl01kq 1466 3 of of IN cord-010027-r0tl01kq 1466 4 697 697 CD cord-010027-r0tl01kq 1466 5 biopsies biopsy NNS cord-010027-r0tl01kq 1466 6 were be VBD cord-010027-r0tl01kq 1466 7 studied study VBN cord-010027-r0tl01kq 1466 8 with with IN cord-010027-r0tl01kq 1466 9 a a DT cord-010027-r0tl01kq 1466 10 prevalence prevalence NN cord-010027-r0tl01kq 1466 11 of of IN cord-010027-r0tl01kq 1466 12 H h NN cord-010027-r0tl01kq 1466 13 pylori pylori NN cord-010027-r0tl01kq 1466 14 infection infection NN cord-010027-r0tl01kq 1466 15 in in IN cord-010027-r0tl01kq 1466 16 34 34 CD cord-010027-r0tl01kq 1466 17 % % NN cord-010027-r0tl01kq 1466 18 with with IN cord-010027-r0tl01kq 1466 19 about about RB cord-010027-r0tl01kq 1466 20 13 13 CD cord-010027-r0tl01kq 1466 21 % % NN cord-010027-r0tl01kq 1466 22 showing show VBG cord-010027-r0tl01kq 1466 23 epithelial epithelial JJ cord-010027-r0tl01kq 1466 24 changes change NNS cord-010027-r0tl01kq 1466 25 , , , cord-010027-r0tl01kq 1466 26 mainly mainly RB cord-010027-r0tl01kq 1466 27 intestinal intestinal JJ cord-010027-r0tl01kq 1466 28 metaplasia metaplasia NN cord-010027-r0tl01kq 1466 29 in in IN cord-010027-r0tl01kq 1466 30 10 10 CD cord-010027-r0tl01kq 1466 31 % % NN cord-010027-r0tl01kq 1466 32 out out IN cord-010027-r0tl01kq 1466 33 of of IN cord-010027-r0tl01kq 1466 34 the the DT cord-010027-r0tl01kq 1466 35 H h NN cord-010027-r0tl01kq 1466 36 pylori pylori NN cord-010027-r0tl01kq 1466 37 positive positive JJ cord-010027-r0tl01kq 1466 38 cases case NNS cord-010027-r0tl01kq 1466 39 , , , cord-010027-r0tl01kq 1466 40 a a DT cord-010027-r0tl01kq 1466 41 few few JJ cord-010027-r0tl01kq 1466 42 cases case NNS cord-010027-r0tl01kq 1466 43 with with IN cord-010027-r0tl01kq 1466 44 low low JJ cord-010027-r0tl01kq 1466 45 grade grade NN cord-010027-r0tl01kq 1466 46 dysplasia dysplasia NN cord-010027-r0tl01kq 1466 47 and and CC cord-010027-r0tl01kq 1466 48 reactive reactive JJ cord-010027-r0tl01kq 1466 49 atypia atypia NN cord-010027-r0tl01kq 1466 50 . . . cord-010027-r0tl01kq 1467 1 In in IN cord-010027-r0tl01kq 1467 2 cocnlusion cocnlusion NN cord-010027-r0tl01kq 1467 3 intestinal intestinal JJ cord-010027-r0tl01kq 1467 4 metaplasia metaplasia NN cord-010027-r0tl01kq 1467 5 was be VBD cord-010027-r0tl01kq 1467 6 the the DT cord-010027-r0tl01kq 1467 7 main main JJ cord-010027-r0tl01kq 1467 8 epithelial epithelial JJ cord-010027-r0tl01kq 1467 9 change change NN cord-010027-r0tl01kq 1467 10 that that WDT cord-010027-r0tl01kq 1467 11 was be VBD cord-010027-r0tl01kq 1467 12 related relate VBN cord-010027-r0tl01kq 1467 13 to to IN cord-010027-r0tl01kq 1467 14 H h NN cord-010027-r0tl01kq 1467 15 pylori pylori NN cord-010027-r0tl01kq 1467 16 infection infection NN cord-010027-r0tl01kq 1467 17 . . . cord-010027-r0tl01kq 1468 1 Further further JJ cord-010027-r0tl01kq 1468 2 studues studue NNS cord-010027-r0tl01kq 1468 3 are be VBP cord-010027-r0tl01kq 1468 4 required require VBN cord-010027-r0tl01kq 1468 5 to to TO cord-010027-r0tl01kq 1468 6 investigate investigate VB cord-010027-r0tl01kq 1468 7 the the DT cord-010027-r0tl01kq 1468 8 relation relation NN cord-010027-r0tl01kq 1468 9 between between IN cord-010027-r0tl01kq 1468 10 H h NN cord-010027-r0tl01kq 1468 11 pylori pylori NN cord-010027-r0tl01kq 1468 12 infection infection NN cord-010027-r0tl01kq 1468 13 and and CC cord-010027-r0tl01kq 1468 14 the the DT cord-010027-r0tl01kq 1468 15 progression progression NN cord-010027-r0tl01kq 1468 16 to to IN cord-010027-r0tl01kq 1468 17 gastric gastric JJ cord-010027-r0tl01kq 1468 18 carcinoma carcinoma NN cord-010027-r0tl01kq 1468 19 . . . cord-010027-r0tl01kq 1469 1 Purpose purpose NN cord-010027-r0tl01kq 1469 2 of of IN cord-010027-r0tl01kq 1469 3 the the DT cord-010027-r0tl01kq 1469 4 study study NN cord-010027-r0tl01kq 1469 5 : : : cord-010027-r0tl01kq 1469 6 Low low JJ cord-010027-r0tl01kq 1469 7 rectal rectal JJ cord-010027-r0tl01kq 1469 8 carcinoma carcinoma NN cord-010027-r0tl01kq 1469 9 may may MD cord-010027-r0tl01kq 1469 10 require require VB cord-010027-r0tl01kq 1469 11 abdomino abdomino NN cord-010027-r0tl01kq 1469 12 - - HYPH cord-010027-r0tl01kq 1469 13 perineal perineal NN cord-010027-r0tl01kq 1469 14 excision excision NN cord-010027-r0tl01kq 1469 15 of of IN cord-010027-r0tl01kq 1469 16 the the DT cord-010027-r0tl01kq 1469 17 rectum rectum NN cord-010027-r0tl01kq 1469 18 ( ( -LRB- cord-010027-r0tl01kq 1469 19 APER APER NNP cord-010027-r0tl01kq 1469 20 ) ) -RRB- cord-010027-r0tl01kq 1469 21 , , , cord-010027-r0tl01kq 1469 22 which which WDT cord-010027-r0tl01kq 1469 23 has have VBZ cord-010027-r0tl01kq 1469 24 been be VBN cord-010027-r0tl01kq 1469 25 associated associate VBN cord-010027-r0tl01kq 1469 26 with with IN cord-010027-r0tl01kq 1469 27 higher high JJR cord-010027-r0tl01kq 1469 28 rates rate NNS cord-010027-r0tl01kq 1469 29 of of IN cord-010027-r0tl01kq 1469 30 tumour tumour NN cord-010027-r0tl01kq 1469 31 perforation perforation NN cord-010027-r0tl01kq 1469 32 and and CC cord-010027-r0tl01kq 1469 33 circumferential circumferential JJ cord-010027-r0tl01kq 1469 34 margin margin NN cord-010027-r0tl01kq 1469 35 ( ( -LRB- cord-010027-r0tl01kq 1469 36 CRM CRM NNP cord-010027-r0tl01kq 1469 37 ) ) -RRB- cord-010027-r0tl01kq 1469 38 involvement involvement NN cord-010027-r0tl01kq 1469 39 than than IN cord-010027-r0tl01kq 1469 40 anterior anterior JJ cord-010027-r0tl01kq 1469 41 resection resection NN cord-010027-r0tl01kq 1469 42 . . . cord-010027-r0tl01kq 1470 1 This this DT cord-010027-r0tl01kq 1470 2 increases increase VBZ cord-010027-r0tl01kq 1470 3 the the DT cord-010027-r0tl01kq 1470 4 risk risk NN cord-010027-r0tl01kq 1470 5 of of IN cord-010027-r0tl01kq 1470 6 local local JJ cord-010027-r0tl01kq 1470 7 recurrence recurrence NN cord-010027-r0tl01kq 1470 8 and and CC cord-010027-r0tl01kq 1470 9 may may MD cord-010027-r0tl01kq 1470 10 necessitate necessitate VB cord-010027-r0tl01kq 1470 11 adjuvant adjuvant JJ cord-010027-r0tl01kq 1470 12 treatment treatment NN cord-010027-r0tl01kq 1470 13 . . . cord-010027-r0tl01kq 1471 1 The the DT cord-010027-r0tl01kq 1471 2 Extralevator Extralevator NNP cord-010027-r0tl01kq 1471 3 Abdominoperineal Abdominoperineal NNP cord-010027-r0tl01kq 1471 4 Excision excision NN cord-010027-r0tl01kq 1471 5 of of IN cord-010027-r0tl01kq 1471 6 Rectum Rectum NNP cord-010027-r0tl01kq 1471 7 ( ( -LRB- cord-010027-r0tl01kq 1471 8 eLAPE elape NN cord-010027-r0tl01kq 1471 9 ) ) -RRB- cord-010027-r0tl01kq 1472 1 in in IN cord-010027-r0tl01kq 1472 2 the the DT cord-010027-r0tl01kq 1472 3 prone prone JJ cord-010027-r0tl01kq 1472 4 position position NN cord-010027-r0tl01kq 1472 5 has have VBZ cord-010027-r0tl01kq 1472 6 been be VBN cord-010027-r0tl01kq 1472 7 found find VBN cord-010027-r0tl01kq 1472 8 to to TO cord-010027-r0tl01kq 1472 9 improve improve VB cord-010027-r0tl01kq 1472 10 these these DT cord-010027-r0tl01kq 1472 11 outcomes outcome NNS cord-010027-r0tl01kq 1472 12 and and CC cord-010027-r0tl01kq 1472 13 has have VBZ cord-010027-r0tl01kq 1472 14 been be VBN cord-010027-r0tl01kq 1472 15 encouraged encourage VBN cord-010027-r0tl01kq 1472 16 by by IN cord-010027-r0tl01kq 1472 17 the the DT cord-010027-r0tl01kq 1472 18 Low Low NNP cord-010027-r0tl01kq 1472 19 Rectal Rectal NNP cord-010027-r0tl01kq 1472 20 Cancer Cancer NNP cord-010027-r0tl01kq 1472 21 National National NNP cord-010027-r0tl01kq 1472 22 Development Development NNP cord-010027-r0tl01kq 1472 23 Programme Programme NNP cord-010027-r0tl01kq 1472 24 ( ( -LRB- cord-010027-r0tl01kq 1472 25 LOREC LOREC NNP cord-010027-r0tl01kq 1472 26 ) ) -RRB- cord-010027-r0tl01kq 1472 27 . . . cord-010027-r0tl01kq 1473 1 We -PRON- PRP cord-010027-r0tl01kq 1473 2 aimed aim VBD cord-010027-r0tl01kq 1473 3 to to TO cord-010027-r0tl01kq 1473 4 assess assess VB cord-010027-r0tl01kq 1473 5 the the DT cord-010027-r0tl01kq 1473 6 effect effect NN cord-010027-r0tl01kq 1473 7 of of IN cord-010027-r0tl01kq 1473 8 increasing increase VBG cord-010027-r0tl01kq 1473 9 the the DT cord-010027-r0tl01kq 1473 10 practice practice NN cord-010027-r0tl01kq 1473 11 of of IN cord-010027-r0tl01kq 1473 12 eLAPE elape NN cord-010027-r0tl01kq 1473 13 on on IN cord-010027-r0tl01kq 1473 14 the the DT cord-010027-r0tl01kq 1473 15 histological histological JJ cord-010027-r0tl01kq 1473 16 and and CC cord-010027-r0tl01kq 1473 17 oncological oncological JJ cord-010027-r0tl01kq 1473 18 outcomes outcome NNS cord-010027-r0tl01kq 1473 19 in in IN cord-010027-r0tl01kq 1473 20 these these DT cord-010027-r0tl01kq 1473 21 cases case NNS cord-010027-r0tl01kq 1473 22 in in IN cord-010027-r0tl01kq 1473 23 the the DT cord-010027-r0tl01kq 1473 24 Mid Mid NNP cord-010027-r0tl01kq 1473 25 - - NNP cord-010027-r0tl01kq 1473 26 Yorkshire Yorkshire NNP cord-010027-r0tl01kq 1473 27 NHS NHS NNP cord-010027-r0tl01kq 1473 28 trust trust NN cord-010027-r0tl01kq 1473 29 , , , cord-010027-r0tl01kq 1473 30 a a DT cord-010027-r0tl01kq 1473 31 large large JJ cord-010027-r0tl01kq 1473 32 District District NNP cord-010027-r0tl01kq 1473 33 General General NNP cord-010027-r0tl01kq 1473 34 Hospital Hospital NNP cord-010027-r0tl01kq 1473 35 . . . cord-010027-r0tl01kq 1474 1 In in IN cord-010027-r0tl01kq 1474 2 2011 2011 CD cord-010027-r0tl01kq 1474 3 the the DT cord-010027-r0tl01kq 1474 4 number number NN cord-010027-r0tl01kq 1474 5 of of IN cord-010027-r0tl01kq 1474 6 surgeons surgeon NNS cord-010027-r0tl01kq 1474 7 routinely routinely RB cord-010027-r0tl01kq 1474 8 performing perform VBG cord-010027-r0tl01kq 1474 9 APER APER NNP cord-010027-r0tl01kq 1474 10 was be VBD cord-010027-r0tl01kq 1474 11 reduced reduce VBN cord-010027-r0tl01kq 1474 12 and and CC cord-010027-r0tl01kq 1474 13 all all PDT cord-010027-r0tl01kq 1474 14 those those DT cord-010027-r0tl01kq 1474 15 performing perform VBG cord-010027-r0tl01kq 1474 16 the the DT cord-010027-r0tl01kq 1474 17 procedure procedure NN cord-010027-r0tl01kq 1474 18 had have VBD cord-010027-r0tl01kq 1474 19 been be VBN cord-010027-r0tl01kq 1474 20 trained train VBN cord-010027-r0tl01kq 1474 21 in in IN cord-010027-r0tl01kq 1474 22 the the DT cord-010027-r0tl01kq 1474 23 cylindrical cylindrical JJ cord-010027-r0tl01kq 1474 24 resection resection NN cord-010027-r0tl01kq 1474 25 technique technique NN cord-010027-r0tl01kq 1474 26 . . . cord-010027-r0tl01kq 1475 1 Joint joint JJ cord-010027-r0tl01kq 1475 2 operating operating NN cord-010027-r0tl01kq 1475 3 and and CC cord-010027-r0tl01kq 1475 4 laparoscopic laparoscopic JJ cord-010027-r0tl01kq 1475 5 procedures procedure NNS cord-010027-r0tl01kq 1475 6 were be VBD cord-010027-r0tl01kq 1475 7 encouraged encourage VBN cord-010027-r0tl01kq 1475 8 . . . cord-010027-r0tl01kq 1476 1 A a DT cord-010027-r0tl01kq 1476 2 retrospective retrospective JJ cord-010027-r0tl01kq 1476 3 review review NN cord-010027-r0tl01kq 1476 4 of of IN cord-010027-r0tl01kq 1476 5 case case NN cord-010027-r0tl01kq 1476 6 notes note NNS cord-010027-r0tl01kq 1476 7 and and CC cord-010027-r0tl01kq 1476 8 histological histological JJ cord-010027-r0tl01kq 1476 9 reports report NNS cord-010027-r0tl01kq 1476 10 between between IN cord-010027-r0tl01kq 1476 11 2009 2009 CD cord-010027-r0tl01kq 1476 12 and and CC cord-010027-r0tl01kq 1476 13 2012 2012 CD cord-010027-r0tl01kq 1476 14 was be VBD cord-010027-r0tl01kq 1476 15 performed perform VBN cord-010027-r0tl01kq 1476 16 ( ( -LRB- cord-010027-r0tl01kq 1476 17 before before IN cord-010027-r0tl01kq 1476 18 and and CC cord-010027-r0tl01kq 1476 19 after after IN cord-010027-r0tl01kq 1476 20 sub sub NN cord-010027-r0tl01kq 1476 21 - - NN cord-010027-r0tl01kq 1476 22 specialisation specialisation NN cord-010027-r0tl01kq 1476 23 ) ) -RRB- cord-010027-r0tl01kq 1476 24 . . . cord-010027-r0tl01kq 1477 1 Patient patient JJ cord-010027-r0tl01kq 1477 2 demographics demographic NNS cord-010027-r0tl01kq 1477 3 , , , cord-010027-r0tl01kq 1477 4 histological histological JJ cord-010027-r0tl01kq 1477 5 findings finding NNS cord-010027-r0tl01kq 1477 6 and and CC cord-010027-r0tl01kq 1477 7 complications complication NNS cord-010027-r0tl01kq 1477 8 including include VBG cord-010027-r0tl01kq 1477 9 local local JJ cord-010027-r0tl01kq 1477 10 recurrence recurrence NN cord-010027-r0tl01kq 1477 11 were be VBD cord-010027-r0tl01kq 1477 12 recorded record VBN cord-010027-r0tl01kq 1477 13 . . . cord-010027-r0tl01kq 1478 1 Summary summary NN cord-010027-r0tl01kq 1478 2 of of IN cord-010027-r0tl01kq 1478 3 Results result NNS cord-010027-r0tl01kq 1478 4 : : : cord-010027-r0tl01kq 1479 1 Between between IN cord-010027-r0tl01kq 1479 2 2009 2009 CD cord-010027-r0tl01kq 1479 3 and and CC cord-010027-r0tl01kq 1479 4 2011 2011 CD cord-010027-r0tl01kq 1479 5 , , , cord-010027-r0tl01kq 1479 6 39 39 CD cord-010027-r0tl01kq 1479 7 APERs aper NNS cord-010027-r0tl01kq 1479 8 were be VBD cord-010027-r0tl01kq 1479 9 performed perform VBN cord-010027-r0tl01kq 1479 10 , , , cord-010027-r0tl01kq 1479 11 with with IN cord-010027-r0tl01kq 1479 12 tumour tumour NN cord-010027-r0tl01kq 1479 13 perforation perforation NN cord-010027-r0tl01kq 1479 14 in in IN cord-010027-r0tl01kq 1479 15 5 5 CD cord-010027-r0tl01kq 1479 16 ( ( -LRB- cord-010027-r0tl01kq 1479 17 13 13 CD cord-010027-r0tl01kq 1479 18 % % NN cord-010027-r0tl01kq 1479 19 ) ) -RRB- cord-010027-r0tl01kq 1479 20 and and CC cord-010027-r0tl01kq 1479 21 CRM CRM NNP cord-010027-r0tl01kq 1479 22 involvement involvement NN cord-010027-r0tl01kq 1479 23 in in IN cord-010027-r0tl01kq 1479 24 8 8 CD cord-010027-r0tl01kq 1479 25 ( ( -LRB- cord-010027-r0tl01kq 1479 26 21 21 CD cord-010027-r0tl01kq 1479 27 % % NN cord-010027-r0tl01kq 1479 28 ) ) -RRB- cord-010027-r0tl01kq 1479 29 of of IN cord-010027-r0tl01kq 1479 30 cases case NNS cord-010027-r0tl01kq 1479 31 . . . cord-010027-r0tl01kq 1480 1 After after IN cord-010027-r0tl01kq 1480 2 sub sub NN cord-010027-r0tl01kq 1480 3 - - NN cord-010027-r0tl01kq 1480 4 specialisation specialisation NN cord-010027-r0tl01kq 1480 5 , , , cord-010027-r0tl01kq 1480 6 28 28 CD cord-010027-r0tl01kq 1480 7 were be VBD cord-010027-r0tl01kq 1480 8 performed perform VBN cord-010027-r0tl01kq 1480 9 . . . cord-010027-r0tl01kq 1481 1 None none NN cord-010027-r0tl01kq 1481 2 were be VBD cord-010027-r0tl01kq 1481 3 perforated perforate VBN cord-010027-r0tl01kq 1481 4 and and CC cord-010027-r0tl01kq 1481 5 2 2 CD cord-010027-r0tl01kq 1481 6 cases case NNS cord-010027-r0tl01kq 1481 7 ( ( -LRB- cord-010027-r0tl01kq 1481 8 7 7 CD cord-010027-r0tl01kq 1481 9 % % NN cord-010027-r0tl01kq 1481 10 ) ) -RRB- cord-010027-r0tl01kq 1481 11 showed show VBD cord-010027-r0tl01kq 1481 12 margin margin NN cord-010027-r0tl01kq 1481 13 involvement involvement NN cord-010027-r0tl01kq 1481 14 . . . cord-010027-r0tl01kq 1482 1 Local local JJ cord-010027-r0tl01kq 1482 2 recurrence recurrence NN cord-010027-r0tl01kq 1482 3 occurred occur VBD cord-010027-r0tl01kq 1482 4 in in IN cord-010027-r0tl01kq 1482 5 two two CD cord-010027-r0tl01kq 1482 6 cases case NNS cord-010027-r0tl01kq 1482 7 before before IN cord-010027-r0tl01kq 1482 8 specialisation specialisation NN cord-010027-r0tl01kq 1482 9 and and CC cord-010027-r0tl01kq 1482 10 none none NN cord-010027-r0tl01kq 1482 11 after after IN cord-010027-r0tl01kq 1482 12 2011 2011 CD cord-010027-r0tl01kq 1482 13 at at IN cord-010027-r0tl01kq 1482 14 the the DT cord-010027-r0tl01kq 1482 15 time time NN cord-010027-r0tl01kq 1482 16 of of IN cord-010027-r0tl01kq 1482 17 follow follow NN cord-010027-r0tl01kq 1482 18 - - HYPH cord-010027-r0tl01kq 1482 19 up up NN cord-010027-r0tl01kq 1482 20 . . . cord-010027-r0tl01kq 1483 1 Joint joint JJ cord-010027-r0tl01kq 1483 2 operating operating NN cord-010027-r0tl01kq 1483 3 and and CC cord-010027-r0tl01kq 1483 4 subspecialisation subspecialisation NN cord-010027-r0tl01kq 1483 5 increased increase VBD cord-010027-r0tl01kq 1483 6 the the DT cord-010027-r0tl01kq 1483 7 number number NN cord-010027-r0tl01kq 1483 8 of of IN cord-010027-r0tl01kq 1483 9 cases case NNS cord-010027-r0tl01kq 1483 10 performed perform VBN cord-010027-r0tl01kq 1483 11 by by IN cord-010027-r0tl01kq 1483 12 each each DT cord-010027-r0tl01kq 1483 13 surgeon surgeon NN cord-010027-r0tl01kq 1483 14 , , , cord-010027-r0tl01kq 1483 15 and and CC cord-010027-r0tl01kq 1483 16 the the DT cord-010027-r0tl01kq 1483 17 number number NN cord-010027-r0tl01kq 1483 18 performed perform VBN cord-010027-r0tl01kq 1483 19 laparoscopically laparoscopically RB cord-010027-r0tl01kq 1483 20 . . . cord-010027-r0tl01kq 1484 1 Conclusions conclusion NNS cord-010027-r0tl01kq 1484 2 : : : cord-010027-r0tl01kq 1484 3 eLAPE elape NN cord-010027-r0tl01kq 1485 1 in in IN cord-010027-r0tl01kq 1485 2 conjunction conjunction NN cord-010027-r0tl01kq 1485 3 with with IN cord-010027-r0tl01kq 1485 4 departmental departmental JJ cord-010027-r0tl01kq 1485 5 restructuring restructuring NN cord-010027-r0tl01kq 1485 6 significantly significantly RB cord-010027-r0tl01kq 1485 7 improves improve VBZ cord-010027-r0tl01kq 1485 8 immediate immediate JJ cord-010027-r0tl01kq 1485 9 oncological oncological JJ cord-010027-r0tl01kq 1485 10 outcomes outcome NNS cord-010027-r0tl01kq 1485 11 in in IN cord-010027-r0tl01kq 1485 12 a a DT cord-010027-r0tl01kq 1485 13 DGH DGH NNP cord-010027-r0tl01kq 1485 14 setting setting NN cord-010027-r0tl01kq 1485 15 , , , cord-010027-r0tl01kq 1485 16 with with IN cord-010027-r0tl01kq 1485 17 no no DT cord-010027-r0tl01kq 1485 18 effect effect NN cord-010027-r0tl01kq 1485 19 on on IN cord-010027-r0tl01kq 1485 20 30 30 CD cord-010027-r0tl01kq 1485 21 day day NN cord-010027-r0tl01kq 1485 22 mortality mortality NN cord-010027-r0tl01kq 1485 23 . . . cord-010027-r0tl01kq 1486 1 The the DT cord-010027-r0tl01kq 1486 2 technique technique NN cord-010027-r0tl01kq 1486 3 may may MD cord-010027-r0tl01kq 1486 4 reduce reduce VB cord-010027-r0tl01kq 1486 5 local local JJ cord-010027-r0tl01kq 1486 6 recurrence recurrence NN cord-010027-r0tl01kq 1486 7 , , , cord-010027-r0tl01kq 1486 8 although although IN cord-010027-r0tl01kq 1486 9 longer long JJR cord-010027-r0tl01kq 1486 10 follow follow NN cord-010027-r0tl01kq 1486 11 - - HYPH cord-010027-r0tl01kq 1486 12 up up NN cord-010027-r0tl01kq 1486 13 would would MD cord-010027-r0tl01kq 1486 14 be be VB cord-010027-r0tl01kq 1486 15 required require VBN cord-010027-r0tl01kq 1486 16 . . . cord-010027-r0tl01kq 1487 1 Background background NN cord-010027-r0tl01kq 1487 2 : : : cord-010027-r0tl01kq 1488 1 Systems system NNS cord-010027-r0tl01kq 1488 2 biology biology NN cord-010027-r0tl01kq 1488 3 uses use VBZ cord-010027-r0tl01kq 1488 4 computational computational NN cord-010027-r0tl01kq 1488 5 and and CC cord-010027-r0tl01kq 1488 6 simulation simulation NN cord-010027-r0tl01kq 1488 7 approaches approach NNS cord-010027-r0tl01kq 1488 8 to to TO cord-010027-r0tl01kq 1488 9 interrogate interrogate VB cord-010027-r0tl01kq 1488 10 gene gene NN cord-010027-r0tl01kq 1488 11 expression expression NN cord-010027-r0tl01kq 1488 12 datasets dataset NNS cord-010027-r0tl01kq 1488 13 and and CC cord-010027-r0tl01kq 1488 14 explore explore VB cord-010027-r0tl01kq 1488 15 biological biological JJ cord-010027-r0tl01kq 1488 16 pathways pathway NNS cord-010027-r0tl01kq 1488 17 . . . cord-010027-r0tl01kq 1489 1 By by IN cord-010027-r0tl01kq 1489 2 employing employ VBG cord-010027-r0tl01kq 1489 3 systems system NNS cord-010027-r0tl01kq 1489 4 biology biology NN cord-010027-r0tl01kq 1489 5 and and CC cord-010027-r0tl01kq 1489 6 data datum NNS cord-010027-r0tl01kq 1489 7 mining mining NN cord-010027-r0tl01kq 1489 8 tools tool NNS cord-010027-r0tl01kq 1489 9 we -PRON- PRP cord-010027-r0tl01kq 1489 10 can can MD cord-010027-r0tl01kq 1489 11 identify identify VB cord-010027-r0tl01kq 1489 12 new new JJ cord-010027-r0tl01kq 1489 13 biomarkers biomarker NNS cord-010027-r0tl01kq 1489 14 . . . cord-010027-r0tl01kq 1490 1 Our -PRON- PRP$ cord-010027-r0tl01kq 1490 2 objective objective NN cord-010027-r0tl01kq 1490 3 was be VBD cord-010027-r0tl01kq 1490 4 to to TO cord-010027-r0tl01kq 1490 5 ascertain ascertain VB cord-010027-r0tl01kq 1490 6 the the DT cord-010027-r0tl01kq 1490 7 utility utility NN cord-010027-r0tl01kq 1490 8 of of IN cord-010027-r0tl01kq 1490 9 a a DT cord-010027-r0tl01kq 1490 10 novel novel JJ cord-010027-r0tl01kq 1490 11 panel panel NN cord-010027-r0tl01kq 1490 12 of of IN cord-010027-r0tl01kq 1490 13 systems system NNS cord-010027-r0tl01kq 1490 14 biology biology NN cord-010027-r0tl01kq 1490 15 derived derive VBN cord-010027-r0tl01kq 1490 16 biomarkers biomarker NNS cord-010027-r0tl01kq 1490 17 in in IN cord-010027-r0tl01kq 1490 18 cervical cervical JJ cord-010027-r0tl01kq 1490 19 pre pre JJ cord-010027-r0tl01kq 1490 20 - - NN cord-010027-r0tl01kq 1490 21 cancer cancer NN cord-010027-r0tl01kq 1490 22 for for IN cord-010027-r0tl01kq 1490 23 more more RBR cord-010027-r0tl01kq 1490 24 accurate accurate JJ cord-010027-r0tl01kq 1490 25 grading grading NN cord-010027-r0tl01kq 1490 26 and and CC cord-010027-r0tl01kq 1490 27 stratification stratification NN cord-010027-r0tl01kq 1490 28 of of IN cord-010027-r0tl01kq 1490 29 CIN CIN NNP cord-010027-r0tl01kq 1490 30 disease disease NN cord-010027-r0tl01kq 1490 31 . . . cord-010027-r0tl01kq 1491 1 Methods method NNS cord-010027-r0tl01kq 1491 2 : : : cord-010027-r0tl01kq 1491 3 This this DT cord-010027-r0tl01kq 1491 4 project project NN cord-010027-r0tl01kq 1491 5 is be VBZ cord-010027-r0tl01kq 1491 6 conducted conduct VBN cord-010027-r0tl01kq 1491 7 within within IN cord-010027-r0tl01kq 1491 8 the the DT cord-010027-r0tl01kq 1491 9 framework framework NN cord-010027-r0tl01kq 1491 10 of of IN cord-010027-r0tl01kq 1491 11 an an DT cord-010027-r0tl01kq 1491 12 FP7 FP7 NNP cord-010027-r0tl01kq 1491 13 funded funded JJ cord-010027-r0tl01kq 1491 14 programme programme NN cord-010027-r0tl01kq 1491 15 " " `` cord-010027-r0tl01kq 1491 16 SYSTEMCERV SYSTEMCERV NNP cord-010027-r0tl01kq 1491 17 " " '' cord-010027-r0tl01kq 1491 18 . . . cord-010027-r0tl01kq 1492 1 Gene gene NN cord-010027-r0tl01kq 1492 2 pathways pathway NNS cord-010027-r0tl01kq 1492 3 were be VBD cord-010027-r0tl01kq 1492 4 analysed analyse VBN cord-010027-r0tl01kq 1492 5 using use VBG cord-010027-r0tl01kq 1492 6 MATLAB MATLAB NNP cord-010027-r0tl01kq 1492 7 and and CC cord-010027-r0tl01kq 1492 8 SIRENE SIRENE NNP cord-010027-r0tl01kq 1492 9 . . . cord-010027-r0tl01kq 1493 1 Along along IN cord-010027-r0tl01kq 1493 2 with with IN cord-010027-r0tl01kq 1493 3 accessing access VBG cord-010027-r0tl01kq 1493 4 KEGGS KEGGS NNP cord-010027-r0tl01kq 1493 5 online online JJ cord-010027-r0tl01kq 1493 6 database database NN cord-010027-r0tl01kq 1493 7 for for IN cord-010027-r0tl01kq 1493 8 gene gene NN cord-010027-r0tl01kq 1493 9 prediction prediction NN cord-010027-r0tl01kq 1493 10 and and CC cord-010027-r0tl01kq 1493 11 DAVID DAVID NNP cord-010027-r0tl01kq 1493 12 for for IN cord-010027-r0tl01kq 1493 13 gene gene NN cord-010027-r0tl01kq 1493 14 functional functional JJ cord-010027-r0tl01kq 1493 15 classification classification NN cord-010027-r0tl01kq 1493 16 , , , cord-010027-r0tl01kq 1493 17 we -PRON- PRP cord-010027-r0tl01kq 1493 18 identified identify VBD cord-010027-r0tl01kq 1493 19 a a DT cord-010027-r0tl01kq 1493 20 novel novel JJ cord-010027-r0tl01kq 1493 21 panel panel NN cord-010027-r0tl01kq 1493 22 of of IN cord-010027-r0tl01kq 1493 23 biomarkers biomarker NNS cord-010027-r0tl01kq 1493 24 . . . cord-010027-r0tl01kq 1494 1 Gephi Gephi NNP cord-010027-r0tl01kq 1494 2 software software NN cord-010027-r0tl01kq 1494 3 was be VBD cord-010027-r0tl01kq 1494 4 used use VBN cord-010027-r0tl01kq 1494 5 to to TO cord-010027-r0tl01kq 1494 6 visualise visualise VB cord-010027-r0tl01kq 1494 7 communities community NNS cord-010027-r0tl01kq 1494 8 of of IN cord-010027-r0tl01kq 1494 9 genes gene NNS cord-010027-r0tl01kq 1494 10 related relate VBN cord-010027-r0tl01kq 1494 11 to to IN cord-010027-r0tl01kq 1494 12 cervical cervical JJ cord-010027-r0tl01kq 1494 13 pre pre JJ cord-010027-r0tl01kq 1494 14 - - NN cord-010027-r0tl01kq 1494 15 cancer cancer NN cord-010027-r0tl01kq 1494 16 and and CC cord-010027-r0tl01kq 1494 17 cancer cancer NN cord-010027-r0tl01kq 1494 18 progression progression NN cord-010027-r0tl01kq 1494 19 . . . cord-010027-r0tl01kq 1495 1 Clinical clinical JJ cord-010027-r0tl01kq 1495 2 validation validation NN cord-010027-r0tl01kq 1495 3 was be VBD cord-010027-r0tl01kq 1495 4 performed perform VBN cord-010027-r0tl01kq 1495 5 by by IN cord-010027-r0tl01kq 1495 6 immunohistochemistry immunohistochemistry NN cord-010027-r0tl01kq 1495 7 on on IN cord-010027-r0tl01kq 1495 8 a a DT cord-010027-r0tl01kq 1495 9 range range NN cord-010027-r0tl01kq 1495 10 of of IN cord-010027-r0tl01kq 1495 11 cervical cervical JJ cord-010027-r0tl01kq 1495 12 LLETZ LLETZ NNP cord-010027-r0tl01kq 1495 13 specimens specimen NNS cord-010027-r0tl01kq 1495 14 ( ( -LRB- cord-010027-r0tl01kq 1495 15 Normal normal JJ cord-010027-r0tl01kq 1495 16 , , , cord-010027-r0tl01kq 1495 17 CIN1 CIN1 NNPS cord-010027-r0tl01kq 1495 18 , , , cord-010027-r0tl01kq 1495 19 CIN2 CIN2 NNP cord-010027-r0tl01kq 1495 20 and and CC cord-010027-r0tl01kq 1495 21 CIN3 CIN3 NNP cord-010027-r0tl01kq 1495 22 ) ) -RRB- cord-010027-r0tl01kq 1495 23 . . . cord-010027-r0tl01kq 1496 1 All all DT cord-010027-r0tl01kq 1496 2 patients patient NNS cord-010027-r0tl01kq 1496 3 gave give VBD cord-010027-r0tl01kq 1496 4 written write VBN cord-010027-r0tl01kq 1496 5 informed informed JJ cord-010027-r0tl01kq 1496 6 consent consent NN cord-010027-r0tl01kq 1496 7 . . . cord-010027-r0tl01kq 1497 1 In in IN cord-010027-r0tl01kq 1497 2 parallel parallel NN cord-010027-r0tl01kq 1497 3 , , , cord-010027-r0tl01kq 1497 4 p16 p16 NN cord-010027-r0tl01kq 1497 5 IHC IHC NNP cord-010027-r0tl01kq 1497 6 was be VBD cord-010027-r0tl01kq 1497 7 performed perform VBN cord-010027-r0tl01kq 1497 8 on on IN cord-010027-r0tl01kq 1497 9 all all DT cord-010027-r0tl01kq 1497 10 specimens specimen NNS cord-010027-r0tl01kq 1497 11 as as IN cord-010027-r0tl01kq 1497 12 a a DT cord-010027-r0tl01kq 1497 13 benchmark benchmark JJ cord-010027-r0tl01kq 1497 14 stain stain NN cord-010027-r0tl01kq 1497 15 . . . cord-010027-r0tl01kq 1498 1 The the DT cord-010027-r0tl01kq 1498 2 mortality mortality NN cord-010027-r0tl01kq 1498 3 associated associate VBN cord-010027-r0tl01kq 1498 4 with with IN cord-010027-r0tl01kq 1498 5 cervical cervical JJ cord-010027-r0tl01kq 1498 6 cancer cancer NN cord-010027-r0tl01kq 1498 7 can can MD cord-010027-r0tl01kq 1498 8 be be VB cord-010027-r0tl01kq 1498 9 reduced reduce VBN cord-010027-r0tl01kq 1498 10 if if IN cord-010027-r0tl01kq 1498 11 the the DT cord-010027-r0tl01kq 1498 12 disease disease NN cord-010027-r0tl01kq 1498 13 is be VBZ cord-010027-r0tl01kq 1498 14 detected detect VBN cord-010027-r0tl01kq 1498 15 at at IN cord-010027-r0tl01kq 1498 16 the the DT cord-010027-r0tl01kq 1498 17 early early JJ cord-010027-r0tl01kq 1498 18 stages stage NNS cord-010027-r0tl01kq 1498 19 of of IN cord-010027-r0tl01kq 1498 20 development development NN cord-010027-r0tl01kq 1498 21 or or CC cord-010027-r0tl01kq 1498 22 at at IN cord-010027-r0tl01kq 1498 23 the the DT cord-010027-r0tl01kq 1498 24 pre pre JJ cord-010027-r0tl01kq 1498 25 - - JJ cord-010027-r0tl01kq 1498 26 malignant malignant JJ cord-010027-r0tl01kq 1498 27 stage stage NN cord-010027-r0tl01kq 1498 28 . . . cord-010027-r0tl01kq 1499 1 The the DT cord-010027-r0tl01kq 1499 2 Pap Pap NNP cord-010027-r0tl01kq 1499 3 smear smear NN cord-010027-r0tl01kq 1499 4 is be VBZ cord-010027-r0tl01kq 1499 5 the the DT cord-010027-r0tl01kq 1499 6 current current JJ cord-010027-r0tl01kq 1499 7 screening screening NN cord-010027-r0tl01kq 1499 8 method method NN cord-010027-r0tl01kq 1499 9 , , , cord-010027-r0tl01kq 1499 10 but but CC cord-010027-r0tl01kq 1499 11 is be VBZ cord-010027-r0tl01kq 1499 12 highly highly RB cord-010027-r0tl01kq 1499 13 subjective subjective JJ cord-010027-r0tl01kq 1499 14 and and CC cord-010027-r0tl01kq 1499 15 can can MD cord-010027-r0tl01kq 1499 16 often often RB cord-010027-r0tl01kq 1499 17 exhibit exhibit VB cord-010027-r0tl01kq 1499 18 low low JJ cord-010027-r0tl01kq 1499 19 specificity specificity NN cord-010027-r0tl01kq 1499 20 and and CC cord-010027-r0tl01kq 1499 21 sensitivity sensitivity NN cord-010027-r0tl01kq 1499 22 . . . cord-010027-r0tl01kq 1500 1 For for IN cord-010027-r0tl01kq 1500 2 this this DT cord-010027-r0tl01kq 1500 3 reason reason NN cord-010027-r0tl01kq 1500 4 , , , cord-010027-r0tl01kq 1500 5 either either CC cord-010027-r0tl01kq 1500 6 a a DT cord-010027-r0tl01kq 1500 7 replacement replacement NN cord-010027-r0tl01kq 1500 8 or or CC cord-010027-r0tl01kq 1500 9 supportive supportive JJ cord-010027-r0tl01kq 1500 10 technique technique NN cord-010027-r0tl01kq 1500 11 is be VBZ cord-010027-r0tl01kq 1500 12 necessary necessary JJ cord-010027-r0tl01kq 1500 13 to to TO cord-010027-r0tl01kq 1500 14 improve improve VB cord-010027-r0tl01kq 1500 15 the the DT cord-010027-r0tl01kq 1500 16 quality quality NN cord-010027-r0tl01kq 1500 17 of of IN cord-010027-r0tl01kq 1500 18 cervical cervical JJ cord-010027-r0tl01kq 1500 19 cancer cancer NN cord-010027-r0tl01kq 1500 20 screening screening NN cord-010027-r0tl01kq 1500 21 . . . cord-010027-r0tl01kq 1501 1 Raman Raman NNP cord-010027-r0tl01kq 1501 2 spectroscopy spectroscopy NN cord-010027-r0tl01kq 1501 3 is be VBZ cord-010027-r0tl01kq 1501 4 a a DT cord-010027-r0tl01kq 1501 5 powerful powerful JJ cord-010027-r0tl01kq 1501 6 tool tool NN cord-010027-r0tl01kq 1501 7 that that WDT cord-010027-r0tl01kq 1501 8 can can MD cord-010027-r0tl01kq 1501 9 generate generate VB cord-010027-r0tl01kq 1501 10 a a DT cord-010027-r0tl01kq 1501 11 biochemical biochemical JJ cord-010027-r0tl01kq 1501 12 fingerprint fingerprint NN cord-010027-r0tl01kq 1501 13 of of IN cord-010027-r0tl01kq 1501 14 a a DT cord-010027-r0tl01kq 1501 15 sample sample NN cord-010027-r0tl01kq 1501 16 in in IN cord-010027-r0tl01kq 1501 17 a a DT cord-010027-r0tl01kq 1501 18 rapid rapid JJ cord-010027-r0tl01kq 1501 19 and and CC cord-010027-r0tl01kq 1501 20 non non JJ cord-010027-r0tl01kq 1501 21 - - JJ cord-010027-r0tl01kq 1501 22 destructive destructive JJ cord-010027-r0tl01kq 1501 23 manner manner NN cord-010027-r0tl01kq 1501 24 . . . cord-010027-r0tl01kq 1502 1 In in IN cord-010027-r0tl01kq 1502 2 this this DT cord-010027-r0tl01kq 1502 3 study study NN cord-010027-r0tl01kq 1502 4 , , , cord-010027-r0tl01kq 1502 5 Raman Raman NNP cord-010027-r0tl01kq 1502 6 spectroscopy spectroscopy NN cord-010027-r0tl01kq 1502 7 has have VBZ cord-010027-r0tl01kq 1502 8 been be VBN cord-010027-r0tl01kq 1502 9 applied apply VBN cord-010027-r0tl01kq 1502 10 to to IN cord-010027-r0tl01kq 1502 11 the the DT cord-010027-r0tl01kq 1502 12 investigation investigation NN cord-010027-r0tl01kq 1502 13 of of IN cord-010027-r0tl01kq 1502 14 cervical cervical JJ cord-010027-r0tl01kq 1502 15 cells cell NNS cord-010027-r0tl01kq 1502 16 from from IN cord-010027-r0tl01kq 1502 17 PreservCyt PreservCyt NNP cord-010027-r0tl01kq 1502 18 specimens specimen NNS cord-010027-r0tl01kq 1502 19 . . . cord-010027-r0tl01kq 1503 1 Raman Raman NNP cord-010027-r0tl01kq 1503 2 measurements measurement NNS cord-010027-r0tl01kq 1503 3 were be VBD cord-010027-r0tl01kq 1503 4 taken take VBN cord-010027-r0tl01kq 1503 5 from from IN cord-010027-r0tl01kq 1503 6 the the DT cord-010027-r0tl01kq 1503 7 nuclei nucleus NNS cord-010027-r0tl01kq 1503 8 of of IN cord-010027-r0tl01kq 1503 9 cervical cervical JJ cord-010027-r0tl01kq 1503 10 cells cell NNS cord-010027-r0tl01kq 1503 11 from from IN cord-010027-r0tl01kq 1503 12 normal normal JJ cord-010027-r0tl01kq 1503 13 , , , cord-010027-r0tl01kq 1503 14 CIN1 CIN1 NNPS cord-010027-r0tl01kq 1503 15 , , , cord-010027-r0tl01kq 1503 16 and and CC cord-010027-r0tl01kq 1503 17 CIN3 CIN3 NNP cord-010027-r0tl01kq 1503 18 samples sample NNS cord-010027-r0tl01kq 1503 19 . . . cord-010027-r0tl01kq 1504 1 These these DT cord-010027-r0tl01kq 1504 2 spectra spectrum NNS cord-010027-r0tl01kq 1504 3 were be VBD cord-010027-r0tl01kq 1504 4 processed process VBN cord-010027-r0tl01kq 1504 5 , , , cord-010027-r0tl01kq 1504 6 analysed analyse VBN cord-010027-r0tl01kq 1504 7 and and CC cord-010027-r0tl01kq 1504 8 used use VBN cord-010027-r0tl01kq 1504 9 to to TO cord-010027-r0tl01kq 1504 10 define define VB cord-010027-r0tl01kq 1504 11 a a DT cord-010027-r0tl01kq 1504 12 spectral spectral JJ cord-010027-r0tl01kq 1504 13 signature signature NN cord-010027-r0tl01kq 1504 14 for for IN cord-010027-r0tl01kq 1504 15 each each DT cord-010027-r0tl01kq 1504 16 grade grade NN cord-010027-r0tl01kq 1504 17 of of IN cord-010027-r0tl01kq 1504 18 cervical cervical JJ cord-010027-r0tl01kq 1504 19 disease disease NN cord-010027-r0tl01kq 1504 20 . . . cord-010027-r0tl01kq 1505 1 Principal Principal NNP cord-010027-r0tl01kq 1505 2 Component Component NNP cord-010027-r0tl01kq 1505 3 Analysis Analysis NNP cord-010027-r0tl01kq 1505 4 ( ( -LRB- cord-010027-r0tl01kq 1505 5 PCA PCA NNP cord-010027-r0tl01kq 1505 6 ) ) -RRB- cord-010027-r0tl01kq 1505 7 was be VBD cord-010027-r0tl01kq 1505 8 used use VBN cord-010027-r0tl01kq 1505 9 to to TO cord-010027-r0tl01kq 1505 10 discriminate discriminate VB cord-010027-r0tl01kq 1505 11 between between IN cord-010027-r0tl01kq 1505 12 the the DT cord-010027-r0tl01kq 1505 13 two two CD cord-010027-r0tl01kq 1505 14 data datum NNS cord-010027-r0tl01kq 1505 15 sets set NNS cord-010027-r0tl01kq 1505 16 . . . cord-010027-r0tl01kq 1506 1 Distinct distinct JJ cord-010027-r0tl01kq 1506 2 Raman Raman NNP cord-010027-r0tl01kq 1506 3 spectral spectral JJ cord-010027-r0tl01kq 1506 4 differences difference NNS cord-010027-r0tl01kq 1506 5 were be VBD cord-010027-r0tl01kq 1506 6 detected detect VBN cord-010027-r0tl01kq 1506 7 between between IN cord-010027-r0tl01kq 1506 8 normal normal JJ cord-010027-r0tl01kq 1506 9 , , , cord-010027-r0tl01kq 1506 10 CIN1 CIN1 NNPS cord-010027-r0tl01kq 1506 11 and and CC cord-010027-r0tl01kq 1506 12 CIN3 CIN3 NNP cord-010027-r0tl01kq 1506 13 cells cell NNS cord-010027-r0tl01kq 1506 14 . . . cord-010027-r0tl01kq 1507 1 Notably notably RB cord-010027-r0tl01kq 1507 2 , , , cord-010027-r0tl01kq 1507 3 it -PRON- PRP cord-010027-r0tl01kq 1507 4 was be VBD cord-010027-r0tl01kq 1507 5 possible possible JJ cord-010027-r0tl01kq 1507 6 to to TO cord-010027-r0tl01kq 1507 7 observe observe VB cord-010027-r0tl01kq 1507 8 spectral spectral JJ cord-010027-r0tl01kq 1507 9 peak peak NN cord-010027-r0tl01kq 1507 10 shifts shift NNS cord-010027-r0tl01kq 1507 11 representing represent VBG cord-010027-r0tl01kq 1507 12 fluctuations fluctuation NNS cord-010027-r0tl01kq 1507 13 in in IN cord-010027-r0tl01kq 1507 14 Guanine Guanine NNP cord-010027-r0tl01kq 1507 15 ( ( -LRB- cord-010027-r0tl01kq 1507 16 DNA DNA NNP cord-010027-r0tl01kq 1507 17 / / SYM cord-010027-r0tl01kq 1507 18 RNA RNA NNP cord-010027-r0tl01kq 1507 19 ) ) -RRB- cord-010027-r0tl01kq 1507 20 , , , cord-010027-r0tl01kq 1507 21 CH CH NNP cord-010027-r0tl01kq 1507 22 deformation deformation NN cord-010027-r0tl01kq 1507 23 in in IN cord-010027-r0tl01kq 1507 24 proteins protein NNS cord-010027-r0tl01kq 1507 25 and and CC cord-010027-r0tl01kq 1507 26 carbohydrates carbohydrate NNS cord-010027-r0tl01kq 1507 27 , , , cord-010027-r0tl01kq 1507 28 Carbon carbon NN cord-010027-r0tl01kq 1507 29 - - HYPH cord-010027-r0tl01kq 1507 30 carbon carbon NN cord-010027-r0tl01kq 1507 31 double double JJ cord-010027-r0tl01kq 1507 32 bonds bond NNS cord-010027-r0tl01kq 1507 33 in in IN cord-010027-r0tl01kq 1507 34 Phenylalanine Phenylalanine NNP cord-010027-r0tl01kq 1507 35 , , , cord-010027-r0tl01kq 1507 36 Tyrosine Tyrosine NNP cord-010027-r0tl01kq 1507 37 and and CC cord-010027-r0tl01kq 1507 38 Tryptophan tryptophan NN cord-010027-r0tl01kq 1507 39 , , , cord-010027-r0tl01kq 1507 40 and and CC cord-010027-r0tl01kq 1507 41 Amide Amide NNP cord-010027-r0tl01kq 1507 42 I. I. NNP cord-010027-r0tl01kq 1508 1 The the DT cord-010027-r0tl01kq 1508 2 PCA PCA NNP cord-010027-r0tl01kq 1508 3 showed show VBD cord-010027-r0tl01kq 1508 4 an an DT cord-010027-r0tl01kq 1508 5 excellent excellent JJ cord-010027-r0tl01kq 1508 6 discrimination discrimination NN cord-010027-r0tl01kq 1508 7 between between IN cord-010027-r0tl01kq 1508 8 the the DT cord-010027-r0tl01kq 1508 9 data data NN cord-010027-r0tl01kq 1508 10 sets set NNS cord-010027-r0tl01kq 1508 11 . . . cord-010027-r0tl01kq 1509 1 This this DT cord-010027-r0tl01kq 1509 2 study study NN cord-010027-r0tl01kq 1509 3 has have VBZ cord-010027-r0tl01kq 1509 4 shown show VBN cord-010027-r0tl01kq 1509 5 that that IN cord-010027-r0tl01kq 1509 6 Raman Raman NNP cord-010027-r0tl01kq 1509 7 spectroscopy spectroscopy NN cord-010027-r0tl01kq 1509 8 can can MD cord-010027-r0tl01kq 1509 9 detect detect VB cord-010027-r0tl01kq 1509 10 subtle subtle JJ cord-010027-r0tl01kq 1509 11 changes change NNS cord-010027-r0tl01kq 1509 12 between between IN cord-010027-r0tl01kq 1509 13 cervical cervical JJ cord-010027-r0tl01kq 1509 14 cells cell NNS cord-010027-r0tl01kq 1509 15 , , , cord-010027-r0tl01kq 1509 16 and and CC cord-010027-r0tl01kq 1509 17 may may MD cord-010027-r0tl01kq 1509 18 be be VB cord-010027-r0tl01kq 1509 19 a a DT cord-010027-r0tl01kq 1509 20 powerful powerful JJ cord-010027-r0tl01kq 1509 21 tool tool NN cord-010027-r0tl01kq 1509 22 for for IN cord-010027-r0tl01kq 1509 23 improved improved JJ cord-010027-r0tl01kq 1509 24 diagnosis diagnosis NN cord-010027-r0tl01kq 1509 25 of of IN cord-010027-r0tl01kq 1509 26 cervical cervical JJ cord-010027-r0tl01kq 1509 27 dysplasia dysplasia NN cord-010027-r0tl01kq 1509 28 . . . cord-010027-r0tl01kq 1510 1 Background background NN cord-010027-r0tl01kq 1510 2 : : : cord-010027-r0tl01kq 1511 1 MyD88 MyD88 NNS cord-010027-r0tl01kq 1511 2 and and CC cord-010027-r0tl01kq 1511 3 MAD2 MAD2 NNPS cord-010027-r0tl01kq 1511 4 are be VBP cord-010027-r0tl01kq 1511 5 two two CD cord-010027-r0tl01kq 1511 6 potential potential JJ cord-010027-r0tl01kq 1511 7 prognostic prognostic JJ cord-010027-r0tl01kq 1511 8 biomarkers biomarker NNS cord-010027-r0tl01kq 1511 9 that that WDT cord-010027-r0tl01kq 1511 10 have have VBP cord-010027-r0tl01kq 1511 11 been be VBN cord-010027-r0tl01kq 1511 12 investigated investigate VBN cord-010027-r0tl01kq 1511 13 in in IN cord-010027-r0tl01kq 1511 14 ovarian ovarian JJ cord-010027-r0tl01kq 1511 15 cancer cancer NN cord-010027-r0tl01kq 1511 16 . . . cord-010027-r0tl01kq 1512 1 High high JJ cord-010027-r0tl01kq 1512 2 MyD88 MyD88 NNS cord-010027-r0tl01kq 1512 3 and and CC cord-010027-r0tl01kq 1512 4 Low low JJ cord-010027-r0tl01kq 1512 5 MAD2 MAD2 NNP cord-010027-r0tl01kq 1512 6 IHC IHC NNP cord-010027-r0tl01kq 1512 7 staining staining NN cord-010027-r0tl01kq 1512 8 is be VBZ cord-010027-r0tl01kq 1512 9 associated associate VBN cord-010027-r0tl01kq 1512 10 with with IN cord-010027-r0tl01kq 1512 11 reduced reduce VBN cord-010027-r0tl01kq 1512 12 PFS PFS NNP cord-010027-r0tl01kq 1512 13 , , , cord-010027-r0tl01kq 1512 14 both both DT cord-010027-r0tl01kq 1512 15 markers marker NNS cord-010027-r0tl01kq 1512 16 are be VBP cord-010027-r0tl01kq 1512 17 also also RB cord-010027-r0tl01kq 1512 18 linked link VBN cord-010027-r0tl01kq 1512 19 to to IN cord-010027-r0tl01kq 1512 20 paclitaxel paclitaxel NNP cord-010027-r0tl01kq 1512 21 chemoresistance chemoresistance NNP cord-010027-r0tl01kq 1512 22 . . . cord-010027-r0tl01kq 1513 1 The the DT cord-010027-r0tl01kq 1513 2 main main JJ cord-010027-r0tl01kq 1513 3 objective objective NN cord-010027-r0tl01kq 1513 4 of of IN cord-010027-r0tl01kq 1513 5 this this DT cord-010027-r0tl01kq 1513 6 study study NN cord-010027-r0tl01kq 1513 7 was be VBD cord-010027-r0tl01kq 1513 8 to to TO cord-010027-r0tl01kq 1513 9 assess assess VB cord-010027-r0tl01kq 1513 10 the the DT cord-010027-r0tl01kq 1513 11 in in FW cord-010027-r0tl01kq 1513 12 vitro vitro FW cord-010027-r0tl01kq 1513 13 relationship relationship NN cord-010027-r0tl01kq 1513 14 between between IN cord-010027-r0tl01kq 1513 15 MAD2 MAD2 NNP cord-010027-r0tl01kq 1513 16 and and CC cord-010027-r0tl01kq 1513 17 MyD88 MyD88 NNP cord-010027-r0tl01kq 1513 18 , , , cord-010027-r0tl01kq 1513 19 through through IN cord-010027-r0tl01kq 1513 20 alteration alteration NN cord-010027-r0tl01kq 1513 21 of of IN cord-010027-r0tl01kq 1513 22 MAD2 MAD2 NNP cord-010027-r0tl01kq 1513 23 , , , cord-010027-r0tl01kq 1513 24 MyD88 MyD88 NNPS cord-010027-r0tl01kq 1513 25 or or CC cord-010027-r0tl01kq 1513 26 its -PRON- PRP$ cord-010027-r0tl01kq 1513 27 receptor receptor NN cord-010027-r0tl01kq 1513 28 TLR4 TLR4 NNP cord-010027-r0tl01kq 1513 29 in in IN cord-010027-r0tl01kq 1513 30 two two CD cord-010027-r0tl01kq 1513 31 ovarian ovarian JJ cord-010027-r0tl01kq 1513 32 cancer cancer NN cord-010027-r0tl01kq 1513 33 cell cell NN cord-010027-r0tl01kq 1513 34 lines line NNS cord-010027-r0tl01kq 1513 35 using use VBG cord-010027-r0tl01kq 1513 36 siRNA siRNA NNP cord-010027-r0tl01kq 1513 37 targeting target VBG cord-010027-r0tl01kq 1513 38 MAD2 MAD2 NNP cord-010027-r0tl01kq 1513 39 , , , cord-010027-r0tl01kq 1513 40 TLR4 TLR4 NNP cord-010027-r0tl01kq 1513 41 or or CC cord-010027-r0tl01kq 1513 42 MyD88 MyD88 NNPS cord-010027-r0tl01kq 1513 43 and and CC cord-010027-r0tl01kq 1513 44 a a DT cord-010027-r0tl01kq 1513 45 MyD88 myd88 JJ cord-010027-r0tl01kq 1513 46 overexpression overexpression NN cord-010027-r0tl01kq 1513 47 plasmid plasmid NN cord-010027-r0tl01kq 1513 48 vector vector NN cord-010027-r0tl01kq 1513 49 . . . cord-010027-r0tl01kq 1514 1 Following follow VBG cord-010027-r0tl01kq 1514 2 overexpression overexpression NN cord-010027-r0tl01kq 1514 3 / / SYM cord-010027-r0tl01kq 1514 4 siRNA siRNA NNP cord-010027-r0tl01kq 1514 5 knockdown knockdown NN cord-010027-r0tl01kq 1514 6 procedures procedure NNS cord-010027-r0tl01kq 1514 7 , , , cord-010027-r0tl01kq 1514 8 MyD88 MyD88 NNPS cord-010027-r0tl01kq 1514 9 , , , cord-010027-r0tl01kq 1514 10 TLR4 TLR4 NNP cord-010027-r0tl01kq 1514 11 and and CC cord-010027-r0tl01kq 1514 12 MAD2 MAD2 NNP cord-010027-r0tl01kq 1514 13 expression expression NN cord-010027-r0tl01kq 1514 14 was be VBD cord-010027-r0tl01kq 1514 15 assessed assess VBN cord-010027-r0tl01kq 1514 16 through through IN cord-010027-r0tl01kq 1514 17 qPCR qpcr JJ cord-010027-r0tl01kq 1514 18 and and CC cord-010027-r0tl01kq 1514 19 Western Western NNP cord-010027-r0tl01kq 1514 20 Blot Blot NNP cord-010027-r0tl01kq 1514 21 analysis analysis NN cord-010027-r0tl01kq 1514 22 . . . cord-010027-r0tl01kq 1515 1 Mir-433 Mir-433 NNP cord-010027-r0tl01kq 1515 2 , , , cord-010027-r0tl01kq 1515 3 Mir-21 Mir-21 NNP cord-010027-r0tl01kq 1515 4 and and CC cord-010027-r0tl01kq 1515 5 Mir-146a Mir-146a NNP cord-010027-r0tl01kq 1515 6 gene gene NN cord-010027-r0tl01kq 1515 7 expression expression NN cord-010027-r0tl01kq 1515 8 was be VBD cord-010027-r0tl01kq 1515 9 also also RB cord-010027-r0tl01kq 1515 10 assessed assess VBN cord-010027-r0tl01kq 1515 11 by by IN cord-010027-r0tl01kq 1515 12 qPCR qPCR NNP cord-010027-r0tl01kq 1515 13 . . . cord-010027-r0tl01kq 1516 1 Furthermore furthermore RB cord-010027-r0tl01kq 1516 2 the the DT cord-010027-r0tl01kq 1516 3 effect effect NN cord-010027-r0tl01kq 1516 4 of of IN cord-010027-r0tl01kq 1516 5 TLR4/ TLR4/ NNP cord-010027-r0tl01kq 1516 6 MyD88 MyD88 NNP cord-010027-r0tl01kq 1516 7 knockdown knockdown NN cord-010027-r0tl01kq 1516 8 on on IN cord-010027-r0tl01kq 1516 9 chemoresponse chemoresponse NN cord-010027-r0tl01kq 1516 10 was be VBD cord-010027-r0tl01kq 1516 11 assessed assess VBN cord-010027-r0tl01kq 1516 12 in in IN cord-010027-r0tl01kq 1516 13 SKOV-3 SKOV-3 NNP cord-010027-r0tl01kq 1516 14 cells cell NNS cord-010027-r0tl01kq 1516 15 using use VBG cord-010027-r0tl01kq 1516 16 the the DT cord-010027-r0tl01kq 1516 17 CCK-8 CCK-8 NNP cord-010027-r0tl01kq 1516 18 assay assay NN cord-010027-r0tl01kq 1516 19 . . . cord-010027-r0tl01kq 1517 1 Results result NNS cord-010027-r0tl01kq 1517 2 / / SYM cord-010027-r0tl01kq 1517 3 Discussion discussion NN cord-010027-r0tl01kq 1517 4 : : : cord-010027-r0tl01kq 1518 1 It -PRON- PRP cord-010027-r0tl01kq 1518 2 was be VBD cord-010027-r0tl01kq 1518 3 found find VBN cord-010027-r0tl01kq 1518 4 that that IN cord-010027-r0tl01kq 1518 5 knockdown knockdown NN cord-010027-r0tl01kq 1518 6 or or CC cord-010027-r0tl01kq 1518 7 overexpression overexpression NN cord-010027-r0tl01kq 1518 8 of of IN cord-010027-r0tl01kq 1518 9 MyD88 MyD88 NNS cord-010027-r0tl01kq 1518 10 in in IN cord-010027-r0tl01kq 1518 11 SKOV-3 SKOV-3 NNP cord-010027-r0tl01kq 1518 12 or or CC cord-010027-r0tl01kq 1518 13 A2780 a2780 NN cord-010027-r0tl01kq 1518 14 cells cell NNS cord-010027-r0tl01kq 1518 15 respectively respectively RB cord-010027-r0tl01kq 1518 16 or or CC cord-010027-r0tl01kq 1518 17 knockdown knockdown NN cord-010027-r0tl01kq 1518 18 of of IN cord-010027-r0tl01kq 1518 19 TLR4 TLR4 NNP cord-010027-r0tl01kq 1518 20 in in IN cord-010027-r0tl01kq 1518 21 SKOV-3 SKOV-3 NNP cord-010027-r0tl01kq 1518 22 cells cell NNS cord-010027-r0tl01kq 1518 23 had have VBD cord-010027-r0tl01kq 1518 24 no no DT cord-010027-r0tl01kq 1518 25 effect effect NN cord-010027-r0tl01kq 1518 26 on on IN cord-010027-r0tl01kq 1518 27 MAD2 MAD2 NNP cord-010027-r0tl01kq 1518 28 expression expression NN cord-010027-r0tl01kq 1518 29 or or CC cord-010027-r0tl01kq 1518 30 the the DT cord-010027-r0tl01kq 1518 31 expression expression NN cord-010027-r0tl01kq 1518 32 of of IN cord-010027-r0tl01kq 1518 33 Mir-21 Mir-21 NNP cord-010027-r0tl01kq 1518 34 , , , cord-010027-r0tl01kq 1518 35 Mir-433 Mir-433 NNP cord-010027-r0tl01kq 1518 36 and and CC cord-010027-r0tl01kq 1518 37 Mir-146a Mir-146a NNP cord-010027-r0tl01kq 1518 38 . . . cord-010027-r0tl01kq 1519 1 Interestingly interestingly RB cord-010027-r0tl01kq 1519 2 however however RB cord-010027-r0tl01kq 1519 3 knockdown knockdown NN cord-010027-r0tl01kq 1519 4 of of IN cord-010027-r0tl01kq 1519 5 MAD2 MAD2 NNPS cord-010027-r0tl01kq 1519 6 in in IN cord-010027-r0tl01kq 1519 7 both both DT cord-010027-r0tl01kq 1519 8 cell cell NN cord-010027-r0tl01kq 1519 9 lines line NNS cord-010027-r0tl01kq 1519 10 induced induce VBD cord-010027-r0tl01kq 1519 11 a a DT cord-010027-r0tl01kq 1519 12 3 3 CD cord-010027-r0tl01kq 1519 13 fold fold JJ cord-010027-r0tl01kq 1519 14 increase increase NN cord-010027-r0tl01kq 1519 15 in in IN cord-010027-r0tl01kq 1519 16 TLR4 TLR4 NNP cord-010027-r0tl01kq 1519 17 expression expression NN cord-010027-r0tl01kq 1519 18 , , , cord-010027-r0tl01kq 1519 19 furthermore furthermore RB cord-010027-r0tl01kq 1519 20 knockdown knockdown NN cord-010027-r0tl01kq 1519 21 of of IN cord-010027-r0tl01kq 1519 22 TLR4 TLR4 NNP cord-010027-r0tl01kq 1519 23 in in IN cord-010027-r0tl01kq 1519 24 SKOV-3 SKOV-3 NNP cord-010027-r0tl01kq 1519 25 cells cell NNS cord-010027-r0tl01kq 1519 26 was be VBD cord-010027-r0tl01kq 1519 27 shown show VBN cord-010027-r0tl01kq 1519 28 to to TO cord-010027-r0tl01kq 1519 29 restore restore VB cord-010027-r0tl01kq 1519 30 chemosensitivity chemosensitivity NN cord-010027-r0tl01kq 1519 31 to to IN cord-010027-r0tl01kq 1519 32 paclitaxel paclitaxel VB cord-010027-r0tl01kq 1519 33 . . . cord-010027-r0tl01kq 1520 1 The the DT cord-010027-r0tl01kq 1520 2 results result NNS cord-010027-r0tl01kq 1520 3 demonstrate demonstrate VBP cord-010027-r0tl01kq 1520 4 a a DT cord-010027-r0tl01kq 1520 5 potential potential NN cord-010027-r0tl01kq 1520 6 in in IN cord-010027-r0tl01kq 1520 7 vitro vitro FW cord-010027-r0tl01kq 1520 8 link link NN cord-010027-r0tl01kq 1520 9 between between IN cord-010027-r0tl01kq 1520 10 TLR4 TLR4 NNP cord-010027-r0tl01kq 1520 11 and and CC cord-010027-r0tl01kq 1520 12 MAD2 MAD2 NNPS cord-010027-r0tl01kq 1520 13 and and CC cord-010027-r0tl01kq 1520 14 support support VB cord-010027-r0tl01kq 1520 15 a a DT cord-010027-r0tl01kq 1520 16 role role NN cord-010027-r0tl01kq 1520 17 for for IN cord-010027-r0tl01kq 1520 18 TLR4 TLR4 NNP cord-010027-r0tl01kq 1520 19 in in IN cord-010027-r0tl01kq 1520 20 paclitaxel paclitaxel NNP cord-010027-r0tl01kq 1520 21 chemoresistance chemoresistance NNP cord-010027-r0tl01kq 1520 22 . . . cord-010027-r0tl01kq 1521 1 Background background NN cord-010027-r0tl01kq 1521 2 : : : cord-010027-r0tl01kq 1522 1 The the DT cord-010027-r0tl01kq 1522 2 prognosis prognosis NN cord-010027-r0tl01kq 1522 3 of of IN cord-010027-r0tl01kq 1522 4 epithelial epithelial JJ cord-010027-r0tl01kq 1522 5 ovarian ovarian JJ cord-010027-r0tl01kq 1522 6 cancer cancer NN cord-010027-r0tl01kq 1522 7 is be VBZ cord-010027-r0tl01kq 1522 8 poor poor JJ cord-010027-r0tl01kq 1522 9 in in IN cord-010027-r0tl01kq 1522 10 part part NN cord-010027-r0tl01kq 1522 11 due due IN cord-010027-r0tl01kq 1522 12 to to IN cord-010027-r0tl01kq 1522 13 the the DT cord-010027-r0tl01kq 1522 14 high high JJ cord-010027-r0tl01kq 1522 15 frequency frequency NN cord-010027-r0tl01kq 1522 16 of of IN cord-010027-r0tl01kq 1522 17 chemoresistance chemoresistance NN cord-010027-r0tl01kq 1522 18 . . . cord-010027-r0tl01kq 1523 1 Recent recent JJ cord-010027-r0tl01kq 1523 2 evidence evidence NN cord-010027-r0tl01kq 1523 3 points point VBZ cord-010027-r0tl01kq 1523 4 to to IN cord-010027-r0tl01kq 1523 5 the the DT cord-010027-r0tl01kq 1523 6 Toll Toll NNP cord-010027-r0tl01kq 1523 7 - - HYPH cord-010027-r0tl01kq 1523 8 like like JJ cord-010027-r0tl01kq 1523 9 receptor-4 receptor-4 NNP cord-010027-r0tl01kq 1523 10 ( ( -LRB- cord-010027-r0tl01kq 1523 11 TLR4 TLR4 NNP cord-010027-r0tl01kq 1523 12 ) ) -RRB- cord-010027-r0tl01kq 1523 13 , , , cord-010027-r0tl01kq 1523 14 and and CC cord-010027-r0tl01kq 1523 15 particularly particularly RB cord-010027-r0tl01kq 1523 16 its -PRON- PRP$ cord-010027-r0tl01kq 1523 17 adaptor adaptor NN cord-010027-r0tl01kq 1523 18 protein protein NN cord-010027-r0tl01kq 1523 19 MyD88 MyD88 NNS cord-010027-r0tl01kq 1523 20 , , , cord-010027-r0tl01kq 1523 21 as as IN cord-010027-r0tl01kq 1523 22 one one CD cord-010027-r0tl01kq 1523 23 potential potential JJ cord-010027-r0tl01kq 1523 24 mediator mediator NN cord-010027-r0tl01kq 1523 25 of of IN cord-010027-r0tl01kq 1523 26 this this DT cord-010027-r0tl01kq 1523 27 resistance resistance NN cord-010027-r0tl01kq 1523 28 . . . cord-010027-r0tl01kq 1524 1 Downregulation Downregulation NNP cord-010027-r0tl01kq 1524 2 of of IN cord-010027-r0tl01kq 1524 3 MAD2 MAD2 NNP cord-010027-r0tl01kq 1524 4 , , , cord-010027-r0tl01kq 1524 5 a a DT cord-010027-r0tl01kq 1524 6 key key JJ cord-010027-r0tl01kq 1524 7 component component NN cord-010027-r0tl01kq 1524 8 of of IN cord-010027-r0tl01kq 1524 9 the the DT cord-010027-r0tl01kq 1524 10 spindle spindle NN cord-010027-r0tl01kq 1524 11 assembly assembly NN cord-010027-r0tl01kq 1524 12 checkpoint checkpoint NN cord-010027-r0tl01kq 1524 13 complex complex NN cord-010027-r0tl01kq 1524 14 , , , cord-010027-r0tl01kq 1524 15 has have VBZ cord-010027-r0tl01kq 1524 16 also also RB cord-010027-r0tl01kq 1524 17 been be VBN cord-010027-r0tl01kq 1524 18 linked link VBN cord-010027-r0tl01kq 1524 19 with with IN cord-010027-r0tl01kq 1524 20 paclitaxel paclitaxel JJ cord-010027-r0tl01kq 1524 21 resistance resistance NN cord-010027-r0tl01kq 1524 22 . . . cord-010027-r0tl01kq 1525 1 Both both DT cord-010027-r0tl01kq 1525 2 markers marker NNS cord-010027-r0tl01kq 1525 3 have have VBP cord-010027-r0tl01kq 1525 4 individually individually RB cord-010027-r0tl01kq 1525 5 been be VBN cord-010027-r0tl01kq 1525 6 shown show VBN cord-010027-r0tl01kq 1525 7 to to TO cord-010027-r0tl01kq 1525 8 be be VB cord-010027-r0tl01kq 1525 9 associated associate VBN cord-010027-r0tl01kq 1525 10 with with IN cord-010027-r0tl01kq 1525 11 poor poor JJ cord-010027-r0tl01kq 1525 12 outcome outcome NN cord-010027-r0tl01kq 1525 13 in in IN cord-010027-r0tl01kq 1525 14 ovarian ovarian JJ cord-010027-r0tl01kq 1525 15 cancer cancer NN cord-010027-r0tl01kq 1525 16 . . . cord-010027-r0tl01kq 1526 1 High high JJ cord-010027-r0tl01kq 1526 2 MyD88 MyD88 NNS cord-010027-r0tl01kq 1526 3 and and CC cord-010027-r0tl01kq 1526 4 low low JJ cord-010027-r0tl01kq 1526 5 MAD2 MAD2 NNP cord-010027-r0tl01kq 1526 6 immunohistochemical immunohistochemical JJ cord-010027-r0tl01kq 1526 7 staining staining NN cord-010027-r0tl01kq 1526 8 is be VBZ cord-010027-r0tl01kq 1526 9 associated associate VBN cord-010027-r0tl01kq 1526 10 with with IN cord-010027-r0tl01kq 1526 11 reduced reduce VBN cord-010027-r0tl01kq 1526 12 progression progression NN cord-010027-r0tl01kq 1526 13 free free JJ cord-010027-r0tl01kq 1526 14 survival survival NN cord-010027-r0tl01kq 1526 15 . . . cord-010027-r0tl01kq 1527 1 The the DT cord-010027-r0tl01kq 1527 2 main main JJ cord-010027-r0tl01kq 1527 3 objective objective NN cord-010027-r0tl01kq 1527 4 of of IN cord-010027-r0tl01kq 1527 5 this this DT cord-010027-r0tl01kq 1527 6 study study NN cord-010027-r0tl01kq 1527 7 was be VBD cord-010027-r0tl01kq 1527 8 to to TO cord-010027-r0tl01kq 1527 9 assess assess VB cord-010027-r0tl01kq 1527 10 the the DT cord-010027-r0tl01kq 1527 11 combined combined JJ cord-010027-r0tl01kq 1527 12 utility utility NN cord-010027-r0tl01kq 1527 13 of of IN cord-010027-r0tl01kq 1527 14 MAD2 MAD2 NNPS cord-010027-r0tl01kq 1527 15 and and CC cord-010027-r0tl01kq 1527 16 MyD88 MyD88 NNPS cord-010027-r0tl01kq 1527 17 in in IN cord-010027-r0tl01kq 1527 18 predicting predict VBG cord-010027-r0tl01kq 1527 19 patient patient JJ cord-010027-r0tl01kq 1527 20 prognosis prognosis NN cord-010027-r0tl01kq 1527 21 . . . cord-010027-r0tl01kq 1528 1 Methods method NNS cord-010027-r0tl01kq 1528 2 : : : cord-010027-r0tl01kq 1528 3 Two two CD cord-010027-r0tl01kq 1528 4 tissue tissue NN cord-010027-r0tl01kq 1528 5 microarrays microarray NNS cord-010027-r0tl01kq 1528 6 composed compose VBN cord-010027-r0tl01kq 1528 7 of of IN cord-010027-r0tl01kq 1528 8 cores core NNS cord-010027-r0tl01kq 1528 9 from from IN cord-010027-r0tl01kq 1528 10 51 51 CD cord-010027-r0tl01kq 1528 11 high high JJ cord-010027-r0tl01kq 1528 12 grade grade NN cord-010027-r0tl01kq 1528 13 serous serous JJ cord-010027-r0tl01kq 1528 14 epithelial epithelial JJ cord-010027-r0tl01kq 1528 15 ovarian ovarian JJ cord-010027-r0tl01kq 1528 16 cancers cancer NNS cord-010027-r0tl01kq 1528 17 patients patient NNS cord-010027-r0tl01kq 1528 18 were be VBD cord-010027-r0tl01kq 1528 19 constructed construct VBN cord-010027-r0tl01kq 1528 20 and and CC cord-010027-r0tl01kq 1528 21 stained stain VBN cord-010027-r0tl01kq 1528 22 for for IN cord-010027-r0tl01kq 1528 23 MAD2 MAD2 NNPS cord-010027-r0tl01kq 1528 24 and and CC cord-010027-r0tl01kq 1528 25 MyD88 MyD88 NNS cord-010027-r0tl01kq 1528 26 . . . cord-010027-r0tl01kq 1529 1 Staining stain VBG cord-010027-r0tl01kq 1529 2 was be VBD cord-010027-r0tl01kq 1529 3 scored score VBN cord-010027-r0tl01kq 1529 4 based base VBN cord-010027-r0tl01kq 1529 5 on on IN cord-010027-r0tl01kq 1529 6 previously previously RB cord-010027-r0tl01kq 1529 7 derived derive VBN cord-010027-r0tl01kq 1529 8 scoring scoring NN cord-010027-r0tl01kq 1529 9 schemes scheme NNS cord-010027-r0tl01kq 1529 10 for for IN cord-010027-r0tl01kq 1529 11 MyD88 MyD88 NNS cord-010027-r0tl01kq 1529 12 or or CC cord-010027-r0tl01kq 1529 13 MAD2 MAD2 NNP cord-010027-r0tl01kq 1529 14 staining staining NN cord-010027-r0tl01kq 1529 15 . . . cord-010027-r0tl01kq 1530 1 The the DT cord-010027-r0tl01kq 1530 2 mean mean JJ cord-010027-r0tl01kq 1530 3 overall overall JJ cord-010027-r0tl01kq 1530 4 score score NN cord-010027-r0tl01kq 1530 5 from from IN cord-010027-r0tl01kq 1530 6 triplicate triplicate NN cord-010027-r0tl01kq 1530 7 cores core NNS cord-010027-r0tl01kq 1530 8 was be VBD cord-010027-r0tl01kq 1530 9 then then RB cord-010027-r0tl01kq 1530 10 used use VBN cord-010027-r0tl01kq 1530 11 to to TO cord-010027-r0tl01kq 1530 12 classify classify VB cord-010027-r0tl01kq 1530 13 patients patient NNS cord-010027-r0tl01kq 1530 14 into into IN cord-010027-r0tl01kq 1530 15 high high JJ cord-010027-r0tl01kq 1530 16 and and CC cord-010027-r0tl01kq 1530 17 low low JJ cord-010027-r0tl01kq 1530 18 staining staining NN cord-010027-r0tl01kq 1530 19 categories category NNS cord-010027-r0tl01kq 1530 20 . . . cord-010027-r0tl01kq 1531 1 Results result NNS cord-010027-r0tl01kq 1531 2 : : : cord-010027-r0tl01kq 1532 1 A a DT cord-010027-r0tl01kq 1532 2 trend trend NN cord-010027-r0tl01kq 1532 3 towards towards IN cord-010027-r0tl01kq 1532 4 reduced reduce VBN cord-010027-r0tl01kq 1532 5 progression progression NN cord-010027-r0tl01kq 1532 6 free free JJ cord-010027-r0tl01kq 1532 7 and and CC cord-010027-r0tl01kq 1532 8 overall overall JJ cord-010027-r0tl01kq 1532 9 survival survival NN cord-010027-r0tl01kq 1532 10 was be VBD cord-010027-r0tl01kq 1532 11 observed observe VBN cord-010027-r0tl01kq 1532 12 in in IN cord-010027-r0tl01kq 1532 13 patients patient NNS cord-010027-r0tl01kq 1532 14 with with IN cord-010027-r0tl01kq 1532 15 high high JJ cord-010027-r0tl01kq 1532 16 myd88 myd88 NNS cord-010027-r0tl01kq 1532 17 and and CC cord-010027-r0tl01kq 1532 18 low low JJ cord-010027-r0tl01kq 1532 19 mad2 mad2 CD cord-010027-r0tl01kq 1532 20 expression expression NN cord-010027-r0tl01kq 1532 21 . . . cord-010027-r0tl01kq 1533 1 The the DT cord-010027-r0tl01kq 1533 2 results result NNS cord-010027-r0tl01kq 1533 3 demonstrate demonstrate VBP cord-010027-r0tl01kq 1533 4 the the DT cord-010027-r0tl01kq 1533 5 combined combined JJ cord-010027-r0tl01kq 1533 6 utility utility NN cord-010027-r0tl01kq 1533 7 of of IN cord-010027-r0tl01kq 1533 8 MAD2 MAD2 NNPS cord-010027-r0tl01kq 1533 9 and and CC cord-010027-r0tl01kq 1533 10 MyD88 MyD88 NNPS cord-010027-r0tl01kq 1533 11 as as IN cord-010027-r0tl01kq 1533 12 predictors predictor NNS cord-010027-r0tl01kq 1533 13 of of IN cord-010027-r0tl01kq 1533 14 prognosis prognosis NN cord-010027-r0tl01kq 1533 15 in in IN cord-010027-r0tl01kq 1533 16 ovarian ovarian JJ cord-010027-r0tl01kq 1533 17 cancer cancer NN cord-010027-r0tl01kq 1533 18 . . . cord-010027-r0tl01kq 1534 1 Purpose purpose NN cord-010027-r0tl01kq 1534 2 : : : cord-010027-r0tl01kq 1535 1 Ovarian ovarian JJ cord-010027-r0tl01kq 1535 2 cancer cancer NN cord-010027-r0tl01kq 1535 3 is be VBZ cord-010027-r0tl01kq 1535 4 characterised characterise VBN cord-010027-r0tl01kq 1535 5 by by IN cord-010027-r0tl01kq 1535 6 high high JJ cord-010027-r0tl01kq 1535 7 rates rate NNS cord-010027-r0tl01kq 1535 8 of of IN cord-010027-r0tl01kq 1535 9 terminal terminal JJ cord-010027-r0tl01kq 1535 10 , , , cord-010027-r0tl01kq 1535 11 chemoresistant chemoresistant JJ cord-010027-r0tl01kq 1535 12 recurrence recurrence NN cord-010027-r0tl01kq 1535 13 . . . cord-010027-r0tl01kq 1536 1 Although although IN cord-010027-r0tl01kq 1536 2 chemoresistance chemoresistance NNP cord-010027-r0tl01kq 1536 3 is be VBZ cord-010027-r0tl01kq 1536 4 known know VBN cord-010027-r0tl01kq 1536 5 to to TO cord-010027-r0tl01kq 1536 6 be be VB cord-010027-r0tl01kq 1536 7 a a DT cord-010027-r0tl01kq 1536 8 property property NN cord-010027-r0tl01kq 1536 9 of of IN cord-010027-r0tl01kq 1536 10 Cancer Cancer NNP cord-010027-r0tl01kq 1536 11 Stem Stem NNP cord-010027-r0tl01kq 1536 12 Cells cell NNS cord-010027-r0tl01kq 1536 13 ( ( -LRB- cord-010027-r0tl01kq 1536 14 CSCs CSCs NNP cord-010027-r0tl01kq 1536 15 ) ) -RRB- cord-010027-r0tl01kq 1536 16 , , , cord-010027-r0tl01kq 1536 17 the the DT cord-010027-r0tl01kq 1536 18 mechanism mechanism NN cord-010027-r0tl01kq 1536 19 is be VBZ cord-010027-r0tl01kq 1536 20 poorly poorly RB cord-010027-r0tl01kq 1536 21 understood understand VBN cord-010027-r0tl01kq 1536 22 . . . cord-010027-r0tl01kq 1537 1 We -PRON- PRP cord-010027-r0tl01kq 1537 2 have have VBP cord-010027-r0tl01kq 1537 3 previously previously RB cord-010027-r0tl01kq 1537 4 identified identify VBN cord-010027-r0tl01kq 1537 5 a a DT cord-010027-r0tl01kq 1537 6 novel novel JJ cord-010027-r0tl01kq 1537 7 four four CD cord-010027-r0tl01kq 1537 8 - - HYPH cord-010027-r0tl01kq 1537 9 member member NN cord-010027-r0tl01kq 1537 10 CSC CSC NNP cord-010027-r0tl01kq 1537 11 Stem Stem NNP cord-010027-r0tl01kq 1537 12 - - HYPH cord-010027-r0tl01kq 1537 13 Progenitor Progenitor NNP cord-010027-r0tl01kq 1537 14 cell cell NN cord-010027-r0tl01kq 1537 15 hierarchy hierarchy NN cord-010027-r0tl01kq 1537 16 for for IN cord-010027-r0tl01kq 1537 17 ovarian ovarian JJ cord-010027-r0tl01kq 1537 18 cancer cancer NN cord-010027-r0tl01kq 1537 19 . . . cord-010027-r0tl01kq 1538 1 The the DT cord-010027-r0tl01kq 1538 2 aim aim NN cord-010027-r0tl01kq 1538 3 of of IN cord-010027-r0tl01kq 1538 4 this this DT cord-010027-r0tl01kq 1538 5 study study NN cord-010027-r0tl01kq 1538 6 was be VBD cord-010027-r0tl01kq 1538 7 to to TO cord-010027-r0tl01kq 1538 8 characterise characterise VB cord-010027-r0tl01kq 1538 9 the the DT cord-010027-r0tl01kq 1538 10 contribution contribution NN cord-010027-r0tl01kq 1538 11 of of IN cord-010027-r0tl01kq 1538 12 each each DT cord-010027-r0tl01kq 1538 13 member member NN cord-010027-r0tl01kq 1538 14 of of IN cord-010027-r0tl01kq 1538 15 the the DT cord-010027-r0tl01kq 1538 16 ovarian ovarian JJ cord-010027-r0tl01kq 1538 17 CSC CSC NNP cord-010027-r0tl01kq 1538 18 hierarchy hierarchy NN cord-010027-r0tl01kq 1538 19 to to IN cord-010027-r0tl01kq 1538 20 chemoresistance chemoresistance NNP cord-010027-r0tl01kq 1538 21 . . . cord-010027-r0tl01kq 1539 1 Methods method NNS cord-010027-r0tl01kq 1539 2 : : : cord-010027-r0tl01kq 1539 3 The the DT cord-010027-r0tl01kq 1539 4 CSC CSC NNP cord-010027-r0tl01kq 1539 5 hierarchy hierarchy NN cord-010027-r0tl01kq 1539 6 was be VBD cord-010027-r0tl01kq 1539 7 assessed assess VBN cord-010027-r0tl01kq 1539 8 for for IN cord-010027-r0tl01kq 1539 9 tolerance tolerance NN cord-010027-r0tl01kq 1539 10 to to IN cord-010027-r0tl01kq 1539 11 chemotherapy chemotherapy NN cord-010027-r0tl01kq 1539 12 drug drug NN cord-010027-r0tl01kq 1539 13 cisplatin cisplatin NN cord-010027-r0tl01kq 1539 14 ( ( -LRB- cord-010027-r0tl01kq 1539 15 MTT MTT NNP cord-010027-r0tl01kq 1539 16 assay assay NN cord-010027-r0tl01kq 1539 17 ) ) -RRB- cord-010027-r0tl01kq 1539 18 both both CC cord-010027-r0tl01kq 1539 19 as as IN cord-010027-r0tl01kq 1539 20 components component NNS cord-010027-r0tl01kq 1539 21 of of IN cord-010027-r0tl01kq 1539 22 the the DT cord-010027-r0tl01kq 1539 23 parent parent NN cord-010027-r0tl01kq 1539 24 population population NN cord-010027-r0tl01kq 1539 25 ( ( -LRB- cord-010027-r0tl01kq 1539 26 A2780 A2780 NNP cord-010027-r0tl01kq 1539 27 cell cell NN cord-010027-r0tl01kq 1539 28 line line NN cord-010027-r0tl01kq 1539 29 ) ) -RRB- cord-010027-r0tl01kq 1539 30 and and CC cord-010027-r0tl01kq 1539 31 as as IN cord-010027-r0tl01kq 1539 32 isolated isolate VBN cord-010027-r0tl01kq 1539 33 cell cell NN cord-010027-r0tl01kq 1539 34 types type NNS cord-010027-r0tl01kq 1539 35 . . . cord-010027-r0tl01kq 1540 1 The the DT cord-010027-r0tl01kq 1540 2 hierarchy hierarchy NN cord-010027-r0tl01kq 1540 3 was be VBD cord-010027-r0tl01kq 1540 4 additionally additionally RB cord-010027-r0tl01kq 1540 5 assessed assess VBN cord-010027-r0tl01kq 1540 6 in in IN cord-010027-r0tl01kq 1540 7 the the DT cord-010027-r0tl01kq 1540 8 long long JJ cord-010027-r0tl01kq 1540 9 - - HYPH cord-010027-r0tl01kq 1540 10 term term NN cord-010027-r0tl01kq 1540 11 cisplatin cisplatin NN cord-010027-r0tl01kq 1540 12 - - HYPH cord-010027-r0tl01kq 1540 13 adapted adapt VBN cord-010027-r0tl01kq 1540 14 ' ' `` cord-010027-r0tl01kq 1540 15 A2780cis a2780cis NN cord-010027-r0tl01kq 1540 16 ' ' POS cord-010027-r0tl01kq 1540 17 cell cell NN cord-010027-r0tl01kq 1540 18 line line NN cord-010027-r0tl01kq 1540 19 . . . cord-010027-r0tl01kq 1541 1 Cell cell NN cord-010027-r0tl01kq 1541 2 types type NNS cord-010027-r0tl01kq 1541 3 were be VBD cord-010027-r0tl01kq 1541 4 analysed analyse VBN cord-010027-r0tl01kq 1541 5 and and CC cord-010027-r0tl01kq 1541 6 isolated isolate VBN cord-010027-r0tl01kq 1541 7 via via IN cord-010027-r0tl01kq 1541 8 flow flow NN cord-010027-r0tl01kq 1541 9 cytometry cytometry NN cord-010027-r0tl01kq 1541 10 and and CC cord-010027-r0tl01kq 1541 11 assessed assess VBN cord-010027-r0tl01kq 1541 12 for for IN cord-010027-r0tl01kq 1541 13 stem stem NN cord-010027-r0tl01kq 1541 14 cell cell NN cord-010027-r0tl01kq 1541 15 characteristic characteristic NN cord-010027-r0tl01kq 1541 16 via via IN cord-010027-r0tl01kq 1541 17 single single JJ cord-010027-r0tl01kq 1541 18 - - HYPH cord-010027-r0tl01kq 1541 19 cell cell NN cord-010027-r0tl01kq 1541 20 asymmetric asymmetric JJ cord-010027-r0tl01kq 1541 21 division division NN cord-010027-r0tl01kq 1541 22 and and CC cord-010027-r0tl01kq 1541 23 murine murine JJ cord-010027-r0tl01kq 1541 24 xenograft xenograft NN cord-010027-r0tl01kq 1541 25 tumourigenicity tumourigenicity NN cord-010027-r0tl01kq 1541 26 assays assay NNS cord-010027-r0tl01kq 1541 27 , , , cord-010027-r0tl01kq 1541 28 and and CC cord-010027-r0tl01kq 1541 29 molecularly molecularly RB cord-010027-r0tl01kq 1541 30 characterised characterise VBN cord-010027-r0tl01kq 1541 31 ( ( -LRB- cord-010027-r0tl01kq 1541 32 whole whole JJ cord-010027-r0tl01kq 1541 33 transcriptome transcriptome NN cord-010027-r0tl01kq 1541 34 arrays array NNS cord-010027-r0tl01kq 1541 35 ) ) -RRB- cord-010027-r0tl01kq 1541 36 . . . cord-010027-r0tl01kq 1542 1 Results result NNS cord-010027-r0tl01kq 1542 2 : : : cord-010027-r0tl01kq 1543 1 Cisplain Cisplain NNP cord-010027-r0tl01kq 1543 2 dose dose NN cord-010027-r0tl01kq 1543 3 - - HYPH cord-010027-r0tl01kq 1543 4 response response NN cord-010027-r0tl01kq 1543 5 assays assay NNS cord-010027-r0tl01kq 1543 6 from from IN cord-010027-r0tl01kq 1543 7 A2780-derived A2780-derived NNP cord-010027-r0tl01kq 1543 8 CSC CSC NNP cord-010027-r0tl01kq 1543 9 sub sub NN cord-010027-r0tl01kq 1543 10 - - HYPH cord-010027-r0tl01kq 1543 11 populations population NNS cord-010027-r0tl01kq 1543 12 indicated indicate VBD cord-010027-r0tl01kq 1543 13 that that IN cord-010027-r0tl01kq 1543 14 only only RB cord-010027-r0tl01kq 1543 15 one one CD cord-010027-r0tl01kq 1543 16 of of IN cord-010027-r0tl01kq 1543 17 the the DT cord-010027-r0tl01kq 1543 18 four four CD cord-010027-r0tl01kq 1543 19 populations population NNS cord-010027-r0tl01kq 1543 20 within within IN cord-010027-r0tl01kq 1543 21 the the DT cord-010027-r0tl01kq 1543 22 hierarchy hierarchy NN cord-010027-r0tl01kq 1543 23 had have VBD cord-010027-r0tl01kq 1543 24 a a DT cord-010027-r0tl01kq 1543 25 high high JJ cord-010027-r0tl01kq 1543 26 cisplatin cisplatin NN cord-010027-r0tl01kq 1543 27 - - HYPH cord-010027-r0tl01kq 1543 28 tolerance tolerance NN cord-010027-r0tl01kq 1543 29 ( ( -LRB- cord-010027-r0tl01kq 1543 30 IC50=10uM IC50=10uM NNP cord-010027-r0tl01kq 1543 31 ) ) -RRB- cord-010027-r0tl01kq 1543 32 compared compare VBN cord-010027-r0tl01kq 1543 33 to to IN cord-010027-r0tl01kq 1543 34 the the DT cord-010027-r0tl01kq 1543 35 other other JJ cord-010027-r0tl01kq 1543 36 populations population NNS cord-010027-r0tl01kq 1543 37 ( ( -LRB- cord-010027-r0tl01kq 1543 38 IC50=4uM IC50=4uM NNP cord-010027-r0tl01kq 1543 39 ) ) -RRB- cord-010027-r0tl01kq 1543 40 . . . cord-010027-r0tl01kq 1544 1 This this DT cord-010027-r0tl01kq 1544 2 was be VBD cord-010027-r0tl01kq 1544 3 notable notable JJ cord-010027-r0tl01kq 1544 4 as as IN cord-010027-r0tl01kq 1544 5 the the DT cord-010027-r0tl01kq 1544 6 relative relative JJ cord-010027-r0tl01kq 1544 7 cisplatin cisplatin NN cord-010027-r0tl01kq 1544 8 IC50s IC50s NNP cord-010027-r0tl01kq 1544 9 for for IN cord-010027-r0tl01kq 1544 10 the the DT cord-010027-r0tl01kq 1544 11 A2780 A2780 NNP cord-010027-r0tl01kq 1544 12 and and CC cord-010027-r0tl01kq 1544 13 A2780cis A2780cis NNP cord-010027-r0tl01kq 1544 14 parent parent NN cord-010027-r0tl01kq 1544 15 cell cell NN cord-010027-r0tl01kq 1544 16 lines line NNS cord-010027-r0tl01kq 1544 17 are be VBP cord-010027-r0tl01kq 1544 18 4uM 4um CD cord-010027-r0tl01kq 1544 19 and and CC cord-010027-r0tl01kq 1544 20 11uM 11um CD cord-010027-r0tl01kq 1544 21 respectively respectively RB cord-010027-r0tl01kq 1544 22 . . . cord-010027-r0tl01kq 1545 1 Treatment treatment NN cord-010027-r0tl01kq 1545 2 of of IN cord-010027-r0tl01kq 1545 3 the the DT cord-010027-r0tl01kq 1545 4 parent parent NN cord-010027-r0tl01kq 1545 5 A2780 A2780 NNP cord-010027-r0tl01kq 1545 6 cell cell NN cord-010027-r0tl01kq 1545 7 line line NN cord-010027-r0tl01kq 1545 8 with with IN cord-010027-r0tl01kq 1545 9 the the DT cord-010027-r0tl01kq 1545 10 IC50 IC50 NNP cord-010027-r0tl01kq 1545 11 ( ( -LRB- cord-010027-r0tl01kq 1545 12 48 48 CD cord-010027-r0tl01kq 1545 13 hours hour NNS cord-010027-r0tl01kq 1545 14 ) ) -RRB- cord-010027-r0tl01kq 1545 15 resulted result VBD cord-010027-r0tl01kq 1545 16 in in IN cord-010027-r0tl01kq 1545 17 a a DT cord-010027-r0tl01kq 1545 18 proportional proportional JJ cord-010027-r0tl01kq 1545 19 50 50 CD cord-010027-r0tl01kq 1545 20 % % NN cord-010027-r0tl01kq 1545 21 loss loss NN cord-010027-r0tl01kq 1545 22 in in IN cord-010027-r0tl01kq 1545 23 each each DT cord-010027-r0tl01kq 1545 24 of of IN cord-010027-r0tl01kq 1545 25 the the DT cord-010027-r0tl01kq 1545 26 four four CD cord-010027-r0tl01kq 1545 27 cell cell NN cord-010027-r0tl01kq 1545 28 types type NNS cord-010027-r0tl01kq 1545 29 , , , cord-010027-r0tl01kq 1545 30 suggesting suggest VBG cord-010027-r0tl01kq 1545 31 that that IN cord-010027-r0tl01kq 1545 32 this this DT cord-010027-r0tl01kq 1545 33 specific specific JJ cord-010027-r0tl01kq 1545 34 CSC CSC NNP cord-010027-r0tl01kq 1545 35 subpopulation subpopulation NN cord-010027-r0tl01kq 1545 36 adapts adapt VBZ cord-010027-r0tl01kq 1545 37 to to IN cord-010027-r0tl01kq 1545 38 cisplatin cisplatin NN cord-010027-r0tl01kq 1545 39 over over IN cord-010027-r0tl01kq 1545 40 a a DT cord-010027-r0tl01kq 1545 41 longer long JJR cord-010027-r0tl01kq 1545 42 period period NN cord-010027-r0tl01kq 1545 43 of of IN cord-010027-r0tl01kq 1545 44 time time NN cord-010027-r0tl01kq 1545 45 . . . cord-010027-r0tl01kq 1546 1 Conclusion conclusion NN cord-010027-r0tl01kq 1546 2 : : : cord-010027-r0tl01kq 1547 1 Although although IN cord-010027-r0tl01kq 1547 2 CSCs csc NNS cord-010027-r0tl01kq 1547 3 are be VBP cord-010027-r0tl01kq 1547 4 known know VBN cord-010027-r0tl01kq 1547 5 to to TO cord-010027-r0tl01kq 1547 6 be be VB cord-010027-r0tl01kq 1547 7 chemoresistant chemoresistant JJ cord-010027-r0tl01kq 1547 8 , , , cord-010027-r0tl01kq 1547 9 the the DT cord-010027-r0tl01kq 1547 10 mechanism mechanism NN cord-010027-r0tl01kq 1547 11 though though IN cord-010027-r0tl01kq 1547 12 which which WDT cord-010027-r0tl01kq 1547 13 this this DT cord-010027-r0tl01kq 1547 14 is be VBZ cord-010027-r0tl01kq 1547 15 achieved achieve VBN cord-010027-r0tl01kq 1547 16 is be VBZ cord-010027-r0tl01kq 1547 17 poorly poorly RB cord-010027-r0tl01kq 1547 18 understood understand VBN cord-010027-r0tl01kq 1547 19 . . . cord-010027-r0tl01kq 1548 1 Our -PRON- PRP$ cord-010027-r0tl01kq 1548 2 data data NN cord-010027-r0tl01kq 1548 3 indicates indicate VBZ cord-010027-r0tl01kq 1548 4 that that IN cord-010027-r0tl01kq 1548 5 only only RB cord-010027-r0tl01kq 1548 6 some some DT cord-010027-r0tl01kq 1548 7 members member NNS cord-010027-r0tl01kq 1548 8 of of IN cord-010027-r0tl01kq 1548 9 a a DT cord-010027-r0tl01kq 1548 10 CSC CSC NNP cord-010027-r0tl01kq 1548 11 hierarchy hierarchy NN cord-010027-r0tl01kq 1548 12 are be VBP cord-010027-r0tl01kq 1548 13 responsible responsible JJ cord-010027-r0tl01kq 1548 14 for for IN cord-010027-r0tl01kq 1548 15 chemoresistance chemoresistance NN cord-010027-r0tl01kq 1548 16 . . . cord-010027-r0tl01kq 1549 1 Notably notably RB cord-010027-r0tl01kq 1549 2 , , , cord-010027-r0tl01kq 1549 3 this this DT cord-010027-r0tl01kq 1549 4 sub sub NN cord-010027-r0tl01kq 1549 5 - - JJ cord-010027-r0tl01kq 1549 6 population population NN cord-010027-r0tl01kq 1549 7 appears appear VBZ cord-010027-r0tl01kq 1549 8 to to TO cord-010027-r0tl01kq 1549 9 possess possess VB cord-010027-r0tl01kq 1549 10 inherent inherent JJ cord-010027-r0tl01kq 1549 11 chemoresistance chemoresistance NN cord-010027-r0tl01kq 1549 12 in in IN cord-010027-r0tl01kq 1549 13 pre pre NNP cord-010027-r0tl01kq 1549 14 - - JJ cord-010027-r0tl01kq 1549 15 treatmentcells treatmentcells NNP cord-010027-r0tl01kq 1549 16 . . . cord-010027-r0tl01kq 1550 1 As as IN cord-010027-r0tl01kq 1550 2 such such JJ cord-010027-r0tl01kq 1550 3 , , , cord-010027-r0tl01kq 1550 4 it -PRON- PRP cord-010027-r0tl01kq 1550 5 should should MD cord-010027-r0tl01kq 1550 6 be be VB cord-010027-r0tl01kq 1550 7 possible possible JJ cord-010027-r0tl01kq 1550 8 to to TO cord-010027-r0tl01kq 1550 9 target target VB cord-010027-r0tl01kq 1550 10 these these DT cord-010027-r0tl01kq 1550 11 CSCs csc NNS cord-010027-r0tl01kq 1550 12 in in IN cord-010027-r0tl01kq 1550 13 the the DT cord-010027-r0tl01kq 1550 14 primary primary JJ cord-010027-r0tl01kq 1550 15 malignancy malignancy NN cord-010027-r0tl01kq 1550 16 to to TO cord-010027-r0tl01kq 1550 17 prevent prevent VB cord-010027-r0tl01kq 1550 18 chemoresistant chemoresistant JJ cord-010027-r0tl01kq 1550 19 recurrence recurrence NN cord-010027-r0tl01kq 1550 20 . . . cord-010027-r0tl01kq 1551 1 Mixed mixed JJ cord-010027-r0tl01kq 1551 2 sex sex NN cord-010027-r0tl01kq 1551 3 cord cord NN cord-010027-r0tl01kq 1551 4 - - HYPH cord-010027-r0tl01kq 1551 5 stromal stromal NN cord-010027-r0tl01kq 1551 6 tumours tumour NNS cord-010027-r0tl01kq 1551 7 of of IN cord-010027-r0tl01kq 1551 8 the the DT cord-010027-r0tl01kq 1551 9 ovary ovary NN cord-010027-r0tl01kq 1551 10 are be VBP cord-010027-r0tl01kq 1551 11 very very RB cord-010027-r0tl01kq 1551 12 rare rare JJ cord-010027-r0tl01kq 1551 13 . . . cord-010027-r0tl01kq 1552 1 We -PRON- PRP cord-010027-r0tl01kq 1552 2 report report VBP cord-010027-r0tl01kq 1552 3 a a DT cord-010027-r0tl01kq 1552 4 case case NN cord-010027-r0tl01kq 1552 5 of of IN cord-010027-r0tl01kq 1552 6 mixed mixed JJ cord-010027-r0tl01kq 1552 7 sex sex NN cord-010027-r0tl01kq 1552 8 cord cord NN cord-010027-r0tl01kq 1552 9 -stromal -stromal JJ cord-010027-r0tl01kq 1552 10 tumour tumour NN cord-010027-r0tl01kq 1552 11 ( ( -LRB- cord-010027-r0tl01kq 1552 12 also also RB cord-010027-r0tl01kq 1552 13 referred refer VBN cord-010027-r0tl01kq 1552 14 to to IN cord-010027-r0tl01kq 1552 15 as as IN cord-010027-r0tl01kq 1552 16 gynandroblastoma gynandroblastoma NNP cord-010027-r0tl01kq 1552 17 ) ) -RRB- cord-010027-r0tl01kq 1552 18 containing contain VBG cord-010027-r0tl01kq 1552 19 both both DT cord-010027-r0tl01kq 1552 20 Sertoli Sertoli NNP cord-010027-r0tl01kq 1552 21 - - HYPH cord-010027-r0tl01kq 1552 22 Leydig leydig NN cord-010027-r0tl01kq 1552 23 cell cell NN cord-010027-r0tl01kq 1552 24 tumour tumour NN cord-010027-r0tl01kq 1552 25 and and CC cord-010027-r0tl01kq 1552 26 adult adult NN cord-010027-r0tl01kq 1552 27 granulosa granulosa JJ cord-010027-r0tl01kq 1552 28 cell cell NN cord-010027-r0tl01kq 1552 29 tumour tumour NN cord-010027-r0tl01kq 1552 30 in in IN cord-010027-r0tl01kq 1552 31 a a DT cord-010027-r0tl01kq 1552 32 female female JJ cord-010027-r0tl01kq 1552 33 61 61 CD cord-010027-r0tl01kq 1552 34 years year NNS cord-010027-r0tl01kq 1552 35 old old JJ cord-010027-r0tl01kq 1552 36 who who WP cord-010027-r0tl01kq 1552 37 presented present VBD cord-010027-r0tl01kq 1552 38 with with IN cord-010027-r0tl01kq 1552 39 postmenopausal postmenopausal JJ cord-010027-r0tl01kq 1552 40 bleeding bleed VBG cord-010027-r0tl01kq 1552 41 . . . cord-010027-r0tl01kq 1553 1 On on IN cord-010027-r0tl01kq 1553 2 histology histology NN cord-010027-r0tl01kq 1553 3 , , , cord-010027-r0tl01kq 1553 4 the the DT cord-010027-r0tl01kq 1553 5 majority majority NN cord-010027-r0tl01kq 1553 6 of of IN cord-010027-r0tl01kq 1553 7 the the DT cord-010027-r0tl01kq 1553 8 tumour tumour NN cord-010027-r0tl01kq 1553 9 represented represent VBD cord-010027-r0tl01kq 1553 10 an an DT cord-010027-r0tl01kq 1553 11 unsual unsual JJ cord-010027-r0tl01kq 1553 12 form form NN cord-010027-r0tl01kq 1553 13 of of IN cord-010027-r0tl01kq 1553 14 well well RB cord-010027-r0tl01kq 1553 15 differentiated differentiate VBN cord-010027-r0tl01kq 1553 16 Sertoli Sertoli NNP cord-010027-r0tl01kq 1553 17 - - HYPH cord-010027-r0tl01kq 1553 18 Leydig leydig NN cord-010027-r0tl01kq 1553 19 cell cell NN cord-010027-r0tl01kq 1553 20 tumour tumour NN cord-010027-r0tl01kq 1553 21 with with IN cord-010027-r0tl01kq 1553 22 a a DT cord-010027-r0tl01kq 1553 23 pseudoendometrioid pseudoendometrioid JJ cord-010027-r0tl01kq 1553 24 appearance appearance NN cord-010027-r0tl01kq 1553 25 . . . cord-010027-r0tl01kq 1554 1 Minor minor JJ cord-010027-r0tl01kq 1554 2 foci focus NNS cord-010027-r0tl01kq 1554 3 of of IN cord-010027-r0tl01kq 1554 4 classic classic JJ cord-010027-r0tl01kq 1554 5 adult adult NN cord-010027-r0tl01kq 1554 6 granulosa granulosa JJ cord-010027-r0tl01kq 1554 7 cell cell NN cord-010027-r0tl01kq 1554 8 tumour tumour NN cord-010027-r0tl01kq 1554 9 were be VBD cord-010027-r0tl01kq 1554 10 present present JJ cord-010027-r0tl01kq 1554 11 . . . cord-010027-r0tl01kq 1555 1 On on IN cord-010027-r0tl01kq 1555 2 immunohistochemistry immunohistochemistry NN cord-010027-r0tl01kq 1555 3 , , , cord-010027-r0tl01kq 1555 4 the the DT cord-010027-r0tl01kq 1555 5 tumour tumour NN cord-010027-r0tl01kq 1555 6 was be VBD cord-010027-r0tl01kq 1555 7 diffusely diffusely RB cord-010027-r0tl01kq 1555 8 positive positive JJ cord-010027-r0tl01kq 1555 9 for for IN cord-010027-r0tl01kq 1555 10 inhibin inhibin NNP cord-010027-r0tl01kq 1555 11 and and CC cord-010027-r0tl01kq 1555 12 SF1 SF1 NNP cord-010027-r0tl01kq 1555 13 and and CC cord-010027-r0tl01kq 1555 14 focally focally RB cord-010027-r0tl01kq 1555 15 for for IN cord-010027-r0tl01kq 1555 16 calretinin calretinin NNS cord-010027-r0tl01kq 1555 17 , , , cord-010027-r0tl01kq 1555 18 ER ER NNP cord-010027-r0tl01kq 1555 19 and and CC cord-010027-r0tl01kq 1555 20 CD56 CD56 NNP cord-010027-r0tl01kq 1555 21 . . . cord-010027-r0tl01kq 1556 1 EMA EMA NNP cord-010027-r0tl01kq 1556 2 , , , cord-010027-r0tl01kq 1556 3 PAX8 PAX8 NNP cord-010027-r0tl01kq 1556 4 and and CC cord-010027-r0tl01kq 1556 5 CK7 CK7 NNP cord-010027-r0tl01kq 1556 6 were be VBD cord-010027-r0tl01kq 1556 7 negative negative JJ cord-010027-r0tl01kq 1556 8 . . . cord-010027-r0tl01kq 1557 1 As as RB cord-010027-r0tl01kq 1557 2 far far RB cord-010027-r0tl01kq 1557 3 as as IN cord-010027-r0tl01kq 1557 4 we -PRON- PRP cord-010027-r0tl01kq 1557 5 are be VBP cord-010027-r0tl01kq 1557 6 aware aware JJ cord-010027-r0tl01kq 1557 7 , , , cord-010027-r0tl01kq 1557 8 this this DT cord-010027-r0tl01kq 1557 9 is be VBZ cord-010027-r0tl01kq 1557 10 the the DT cord-010027-r0tl01kq 1557 11 first first JJ cord-010027-r0tl01kq 1557 12 report report NN cord-010027-r0tl01kq 1557 13 of of IN cord-010027-r0tl01kq 1557 14 an an DT cord-010027-r0tl01kq 1557 15 ovarian ovarian JJ cord-010027-r0tl01kq 1557 16 mixed mixed JJ cord-010027-r0tl01kq 1557 17 sex sex NN cord-010027-r0tl01kq 1557 18 cord cord NN cord-010027-r0tl01kq 1557 19 - - HYPH cord-010027-r0tl01kq 1557 20 stromal stromal NN cord-010027-r0tl01kq 1557 21 tumour tumour NN cord-010027-r0tl01kq 1557 22 containing contain VBG cord-010027-r0tl01kq 1557 23 a a DT cord-010027-r0tl01kq 1557 24 component component NN cord-010027-r0tl01kq 1557 25 of of IN cord-010027-r0tl01kq 1557 26 pseudoendometrioid pseudoendometrioid NNP cord-010027-r0tl01kq 1557 27 Sertoli Sertoli NNP cord-010027-r0tl01kq 1557 28 - - HYPH cord-010027-r0tl01kq 1557 29 Leydig leydig NN cord-010027-r0tl01kq 1557 30 cell cell NN cord-010027-r0tl01kq 1557 31 tumour tumour NN cord-010027-r0tl01kq 1557 32 . . . cord-010027-r0tl01kq 1558 1 A a DT cord-010027-r0tl01kq 1558 2 37 37 CD cord-010027-r0tl01kq 1558 3 year year NN cord-010027-r0tl01kq 1558 4 old old JJ cord-010027-r0tl01kq 1558 5 female female JJ cord-010027-r0tl01kq 1558 6 patient patient NN cord-010027-r0tl01kq 1558 7 presented present VBN cord-010027-r0tl01kq 1558 8 with with IN cord-010027-r0tl01kq 1558 9 bilateral bilateral JJ cord-010027-r0tl01kq 1558 10 painful painful JJ cord-010027-r0tl01kq 1558 11 warty warty JJ cord-010027-r0tl01kq 1558 12 lesions lesion NNS cord-010027-r0tl01kq 1558 13 on on IN cord-010027-r0tl01kq 1558 14 the the DT cord-010027-r0tl01kq 1558 15 labia labium NNS cord-010027-r0tl01kq 1558 16 majora majora NNP cord-010027-r0tl01kq 1558 17 . . . cord-010027-r0tl01kq 1559 1 The the DT cord-010027-r0tl01kq 1559 2 patient patient NN cord-010027-r0tl01kq 1559 3 had have VBD cord-010027-r0tl01kq 1559 4 had have VBN cord-010027-r0tl01kq 1559 5 HIV HIV NNP cord-010027-r0tl01kq 1559 6 for for IN cord-010027-r0tl01kq 1559 7 a a DT cord-010027-r0tl01kq 1559 8 long long JJ cord-010027-r0tl01kq 1559 9 time time NN cord-010027-r0tl01kq 1559 10 and and CC cord-010027-r0tl01kq 1559 11 was be VBD cord-010027-r0tl01kq 1559 12 on on IN cord-010027-r0tl01kq 1559 13 highly highly RB cord-010027-r0tl01kq 1559 14 active active JJ cord-010027-r0tl01kq 1559 15 antiretroviral antiretroviral JJ cord-010027-r0tl01kq 1559 16 therapy therapy NN cord-010027-r0tl01kq 1559 17 . . . cord-010027-r0tl01kq 1560 1 She -PRON- PRP cord-010027-r0tl01kq 1560 2 also also RB cord-010027-r0tl01kq 1560 3 suffered suffer VBD cord-010027-r0tl01kq 1560 4 chronic chronic JJ cord-010027-r0tl01kq 1560 5 renal renal JJ cord-010027-r0tl01kq 1560 6 failure failure NN cord-010027-r0tl01kq 1560 7 requiring require VBG cord-010027-r0tl01kq 1560 8 haemodialysis haemodialysis NNP cord-010027-r0tl01kq 1560 9 three three CD cord-010027-r0tl01kq 1560 10 times time NNS cord-010027-r0tl01kq 1560 11 weekly weekly JJ cord-010027-r0tl01kq 1560 12 . . . cord-010027-r0tl01kq 1561 1 Clinically clinically RB cord-010027-r0tl01kq 1561 2 , , , cord-010027-r0tl01kq 1561 3 the the DT cord-010027-r0tl01kq 1561 4 lesions lesion NNS cord-010027-r0tl01kq 1561 5 were be VBD cord-010027-r0tl01kq 1561 6 highly highly RB cord-010027-r0tl01kq 1561 7 suspicious suspicious JJ cord-010027-r0tl01kq 1561 8 of of IN cord-010027-r0tl01kq 1561 9 vulval vulval JJ cord-010027-r0tl01kq 1561 10 cancer cancer NN cord-010027-r0tl01kq 1561 11 . . . cord-010027-r0tl01kq 1562 1 The the DT cord-010027-r0tl01kq 1562 2 lesions lesion NNS cord-010027-r0tl01kq 1562 3 increased increase VBD cord-010027-r0tl01kq 1562 4 significantly significantly RB cord-010027-r0tl01kq 1562 5 in in IN cord-010027-r0tl01kq 1562 6 size size NN cord-010027-r0tl01kq 1562 7 over over IN cord-010027-r0tl01kq 1562 8 a a DT cord-010027-r0tl01kq 1562 9 short short JJ cord-010027-r0tl01kq 1562 10 period period NN cord-010027-r0tl01kq 1562 11 of of IN cord-010027-r0tl01kq 1562 12 time time NN cord-010027-r0tl01kq 1562 13 ( ( -LRB- cord-010027-r0tl01kq 1562 14 2 2 CD cord-010027-r0tl01kq 1562 15 months month NNS cord-010027-r0tl01kq 1562 16 ) ) -RRB- cord-010027-r0tl01kq 1562 17 requiring require VBG cord-010027-r0tl01kq 1562 18 surgical surgical JJ cord-010027-r0tl01kq 1562 19 resection resection NN cord-010027-r0tl01kq 1562 20 under under IN cord-010027-r0tl01kq 1562 21 general general JJ cord-010027-r0tl01kq 1562 22 anaesthesia anaesthesia NN cord-010027-r0tl01kq 1562 23 . . . cord-010027-r0tl01kq 1563 1 Histological histological JJ cord-010027-r0tl01kq 1563 2 examinations examination NNS cord-010027-r0tl01kq 1563 3 revealed reveal VBD cord-010027-r0tl01kq 1563 4 polypoid polypoid JJ cord-010027-r0tl01kq 1563 5 lesions lesion NNS cord-010027-r0tl01kq 1563 6 with with IN cord-010027-r0tl01kq 1563 7 prominent prominent JJ cord-010027-r0tl01kq 1563 8 pseudoepitheliomatous pseudoepitheliomatous JJ cord-010027-r0tl01kq 1563 9 hyperplasia hyperplasia NN cord-010027-r0tl01kq 1563 10 and and CC cord-010027-r0tl01kq 1563 11 dense dense JJ cord-010027-r0tl01kq 1563 12 inflammatory inflammatory JJ cord-010027-r0tl01kq 1563 13 infiltrate infiltrate NN cord-010027-r0tl01kq 1563 14 , , , cord-010027-r0tl01kq 1563 15 composed compose VBN cord-010027-r0tl01kq 1563 16 mainly mainly RB cord-010027-r0tl01kq 1563 17 of of IN cord-010027-r0tl01kq 1563 18 lymphocytes lymphocyte NNS cord-010027-r0tl01kq 1563 19 and and CC cord-010027-r0tl01kq 1563 20 plasma plasma NN cord-010027-r0tl01kq 1563 21 cells cell NNS cord-010027-r0tl01kq 1563 22 , , , cord-010027-r0tl01kq 1563 23 extending extend VBG cord-010027-r0tl01kq 1563 24 to to IN cord-010027-r0tl01kq 1563 25 the the DT cord-010027-r0tl01kq 1563 26 hypodermis hypodermis NNP cord-010027-r0tl01kq 1563 27 . . . cord-010027-r0tl01kq 1564 1 Numerous numerous JJ cord-010027-r0tl01kq 1564 2 abscesses abscess NNS cord-010027-r0tl01kq 1564 3 with with IN cord-010027-r0tl01kq 1564 4 large large JJ cord-010027-r0tl01kq 1564 5 numbers number NNS cord-010027-r0tl01kq 1564 6 of of IN cord-010027-r0tl01kq 1564 7 eosinophils eosinophil NNS cord-010027-r0tl01kq 1564 8 were be VBD cord-010027-r0tl01kq 1564 9 present present JJ cord-010027-r0tl01kq 1564 10 withinin withinin NNP cord-010027-r0tl01kq 1564 11 the the DT cord-010027-r0tl01kq 1564 12 hyperplastic hyperplastic JJ cord-010027-r0tl01kq 1564 13 epithelium epithelium NN cord-010027-r0tl01kq 1564 14 . . . cord-010027-r0tl01kq 1565 1 The the DT cord-010027-r0tl01kq 1565 2 typical typical JJ cord-010027-r0tl01kq 1565 3 intranuclear intranuclear NN cord-010027-r0tl01kq 1565 4 inclusions inclusion NNS cord-010027-r0tl01kq 1565 5 of of IN cord-010027-r0tl01kq 1565 6 herpes herpes NN cord-010027-r0tl01kq 1565 7 simplex simplex NNP cord-010027-r0tl01kq 1565 8 virus virus NN cord-010027-r0tl01kq 1565 9 ( ( -LRB- cord-010027-r0tl01kq 1565 10 HSV HSV NNP cord-010027-r0tl01kq 1565 11 ) ) -RRB- cord-010027-r0tl01kq 1565 12 were be VBD cord-010027-r0tl01kq 1565 13 identified identify VBN cord-010027-r0tl01kq 1565 14 . . . cord-010027-r0tl01kq 1566 1 HSV HSV NNP cord-010027-r0tl01kq 1566 2 immunohistochemistry immunohistochemistry NN cord-010027-r0tl01kq 1566 3 was be VBD cord-010027-r0tl01kq 1566 4 positive positive JJ cord-010027-r0tl01kq 1566 5 . . . cord-010027-r0tl01kq 1567 1 This this DT cord-010027-r0tl01kq 1567 2 is be VBZ cord-010027-r0tl01kq 1567 3 a a DT cord-010027-r0tl01kq 1567 4 rare rare JJ cord-010027-r0tl01kq 1567 5 case case NN cord-010027-r0tl01kq 1567 6 of of IN cord-010027-r0tl01kq 1567 7 vulval vulval JJ cord-010027-r0tl01kq 1567 8 HSV HSV NNP cord-010027-r0tl01kq 1567 9 warts wart NNS cord-010027-r0tl01kq 1567 10 mimicking mimic VBG cord-010027-r0tl01kq 1567 11 cancer cancer NN cord-010027-r0tl01kq 1567 12 . . . cord-010027-r0tl01kq 1568 1 Oral oral JJ cord-010027-r0tl01kq 1568 2 acyclovir acyclovir NNP cord-010027-r0tl01kq 1568 3 was be VBD cord-010027-r0tl01kq 1568 4 administered administer VBN cord-010027-r0tl01kq 1568 5 following follow VBG cord-010027-r0tl01kq 1568 6 surgery surgery NN cord-010027-r0tl01kq 1568 7 and and CC cord-010027-r0tl01kq 1568 8 resulted result VBD cord-010027-r0tl01kq 1568 9 in in IN cord-010027-r0tl01kq 1568 10 good good JJ cord-010027-r0tl01kq 1568 11 control control NN cord-010027-r0tl01kq 1568 12 . . . cord-010027-r0tl01kq 1569 1 Literature literature NN cord-010027-r0tl01kq 1569 2 review review NN cord-010027-r0tl01kq 1569 3 shows show VBZ cord-010027-r0tl01kq 1569 4 only only RB cord-010027-r0tl01kq 1569 5 6 6 CD cord-010027-r0tl01kq 1569 6 previously previously RB cord-010027-r0tl01kq 1569 7 described describe VBN cord-010027-r0tl01kq 1569 8 cases case NNS cord-010027-r0tl01kq 1569 9 of of IN cord-010027-r0tl01kq 1569 10 verrucous verrucous JJ cord-010027-r0tl01kq 1569 11 HSV HSV NNP cord-010027-r0tl01kq 1569 12 , , , cord-010027-r0tl01kq 1569 13 Types Types NNP cord-010027-r0tl01kq 1569 14 1 1 CD cord-010027-r0tl01kq 1569 15 and and CC cord-010027-r0tl01kq 1569 16 2 2 CD cord-010027-r0tl01kq 1569 17 , , , cord-010027-r0tl01kq 1569 18 simulating simulate VBG cord-010027-r0tl01kq 1569 19 neoplasia neoplasia NN cord-010027-r0tl01kq 1569 20 in in IN cord-010027-r0tl01kq 1569 21 patients patient NNS cord-010027-r0tl01kq 1569 22 with with IN cord-010027-r0tl01kq 1569 23 AIDS AIDS NNP cord-010027-r0tl01kq 1569 24 on on IN cord-010027-r0tl01kq 1569 25 antiretroviral antiretroviral JJ cord-010027-r0tl01kq 1569 26 therapy therapy NN cord-010027-r0tl01kq 1569 27 . . . cord-010027-r0tl01kq 1570 1 Primary primary JJ cord-010027-r0tl01kq 1570 2 mucinous mucinous JJ cord-010027-r0tl01kq 1570 3 eccrine eccrine JJ cord-010027-r0tl01kq 1570 4 adenocarcinoma adenocarcinoma NN cord-010027-r0tl01kq 1570 5 of of IN cord-010027-r0tl01kq 1570 6 the the DT cord-010027-r0tl01kq 1570 7 skin skin NN cord-010027-r0tl01kq 1570 8 is be VBZ cord-010027-r0tl01kq 1570 9 a a DT cord-010027-r0tl01kq 1570 10 rare rare JJ cord-010027-r0tl01kq 1570 11 adnexal adnexal NN cord-010027-r0tl01kq 1570 12 neoplasm neoplasm NN cord-010027-r0tl01kq 1570 13 , , , cord-010027-r0tl01kq 1570 14 typically typically RB cord-010027-r0tl01kq 1570 15 involving involve VBG cord-010027-r0tl01kq 1570 16 the the DT cord-010027-r0tl01kq 1570 17 head head NN cord-010027-r0tl01kq 1570 18 and and CC cord-010027-r0tl01kq 1570 19 neck neck NN cord-010027-r0tl01kq 1570 20 region region NN cord-010027-r0tl01kq 1570 21 in in IN cord-010027-r0tl01kq 1570 22 the the DT cord-010027-r0tl01kq 1570 23 elderly elderly JJ cord-010027-r0tl01kq 1570 24 population population NN cord-010027-r0tl01kq 1570 25 . . . cord-010027-r0tl01kq 1571 1 Here here RB cord-010027-r0tl01kq 1571 2 we -PRON- PRP cord-010027-r0tl01kq 1571 3 present present VBP cord-010027-r0tl01kq 1571 4 a a DT cord-010027-r0tl01kq 1571 5 case case NN cord-010027-r0tl01kq 1571 6 of of IN cord-010027-r0tl01kq 1571 7 primary primary JJ cord-010027-r0tl01kq 1571 8 mucinous mucinous JJ cord-010027-r0tl01kq 1571 9 eccrine eccrine JJ cord-010027-r0tl01kq 1571 10 adenocarcinoma adenocarcinoma NN cord-010027-r0tl01kq 1571 11 of of IN cord-010027-r0tl01kq 1571 12 the the DT cord-010027-r0tl01kq 1571 13 vulva vulva NN cord-010027-r0tl01kq 1571 14 ; ; : cord-010027-r0tl01kq 1571 15 occurrence occurrence NN cord-010027-r0tl01kq 1571 16 at at IN cord-010027-r0tl01kq 1571 17 this this DT cord-010027-r0tl01kq 1571 18 site site NN cord-010027-r0tl01kq 1571 19 is be VBZ cord-010027-r0tl01kq 1571 20 extremely extremely RB cord-010027-r0tl01kq 1571 21 rare rare JJ cord-010027-r0tl01kq 1571 22 , , , cord-010027-r0tl01kq 1571 23 with with IN cord-010027-r0tl01kq 1571 24 only only RB cord-010027-r0tl01kq 1571 25 five five CD cord-010027-r0tl01kq 1571 26 cases case NNS cord-010027-r0tl01kq 1571 27 published publish VBN cord-010027-r0tl01kq 1571 28 in in IN cord-010027-r0tl01kq 1571 29 English english JJ cord-010027-r0tl01kq 1571 30 literature literature NN cord-010027-r0tl01kq 1571 31 . . . cord-010027-r0tl01kq 1572 1 A a DT cord-010027-r0tl01kq 1572 2 62 62 CD cord-010027-r0tl01kq 1572 3 year year NN cord-010027-r0tl01kq 1572 4 old old JJ cord-010027-r0tl01kq 1572 5 female female NN cord-010027-r0tl01kq 1572 6 presented present VBN cord-010027-r0tl01kq 1572 7 with with IN cord-010027-r0tl01kq 1572 8 a a DT cord-010027-r0tl01kq 1572 9 10 10 CD cord-010027-r0tl01kq 1572 10 mm mm NN cord-010027-r0tl01kq 1572 11 vulval vulval JJ cord-010027-r0tl01kq 1572 12 lesion lesion NN cord-010027-r0tl01kq 1572 13 , , , cord-010027-r0tl01kq 1572 14 clinically clinically RB cord-010027-r0tl01kq 1572 15 suspected suspect VBN cord-010027-r0tl01kq 1572 16 to to TO cord-010027-r0tl01kq 1572 17 be be VB cord-010027-r0tl01kq 1572 18 an an DT cord-010027-r0tl01kq 1572 19 inclusion inclusion NN cord-010027-r0tl01kq 1572 20 cyst cyst NN cord-010027-r0tl01kq 1572 21 . . . cord-010027-r0tl01kq 1573 1 The the DT cord-010027-r0tl01kq 1573 2 lesion lesion NN cord-010027-r0tl01kq 1573 3 was be VBD cord-010027-r0tl01kq 1573 4 removed remove VBN cord-010027-r0tl01kq 1573 5 and and CC cord-010027-r0tl01kq 1573 6 sent send VBN cord-010027-r0tl01kq 1573 7 for for IN cord-010027-r0tl01kq 1573 8 histopathological histopathological NNP cord-010027-r0tl01kq 1573 9 assessment assessment NN cord-010027-r0tl01kq 1573 10 . . . cord-010027-r0tl01kq 1574 1 Histological histological JJ cord-010027-r0tl01kq 1574 2 examination examination NN cord-010027-r0tl01kq 1574 3 revealed reveal VBD cord-010027-r0tl01kq 1574 4 a a DT cord-010027-r0tl01kq 1574 5 well well RB cord-010027-r0tl01kq 1574 6 circumscribed circumscribed JJ cord-010027-r0tl01kq 1574 7 , , , cord-010027-r0tl01kq 1574 8 partly partly RB cord-010027-r0tl01kq 1574 9 encapsulated encapsulate VBN cord-010027-r0tl01kq 1574 10 tumour tumour NN cord-010027-r0tl01kq 1574 11 composed compose VBN cord-010027-r0tl01kq 1574 12 of of IN cord-010027-r0tl01kq 1574 13 rounded rounded JJ cord-010027-r0tl01kq 1574 14 and and CC cord-010027-r0tl01kq 1574 15 irregular irregular JJ cord-010027-r0tl01kq 1574 16 nests nest NNS cord-010027-r0tl01kq 1574 17 of of IN cord-010027-r0tl01kq 1574 18 polygonal polygonal JJ cord-010027-r0tl01kq 1574 19 epithelial epithelial JJ cord-010027-r0tl01kq 1574 20 cells cell NNS cord-010027-r0tl01kq 1574 21 with with IN cord-010027-r0tl01kq 1574 22 scattered scatter VBN cord-010027-r0tl01kq 1574 23 lumina lumina NNP cord-010027-r0tl01kq 1574 24 , , , cord-010027-r0tl01kq 1574 25 suspended suspend VBN cord-010027-r0tl01kq 1574 26 in in IN cord-010027-r0tl01kq 1574 27 pools pool NNS cord-010027-r0tl01kq 1574 28 of of IN cord-010027-r0tl01kq 1574 29 extracellular extracellular JJ cord-010027-r0tl01kq 1574 30 mucin mucin NN cord-010027-r0tl01kq 1574 31 . . . cord-010027-r0tl01kq 1575 1 The the DT cord-010027-r0tl01kq 1575 2 epithelial epithelial JJ cord-010027-r0tl01kq 1575 3 cell cell NN cord-010027-r0tl01kq 1575 4 nuclei nucleus NNS cord-010027-r0tl01kq 1575 5 displayed display VBD cord-010027-r0tl01kq 1575 6 a a DT cord-010027-r0tl01kq 1575 7 uniform uniform JJ cord-010027-r0tl01kq 1575 8 chromatin chromatin NN cord-010027-r0tl01kq 1575 9 pattern pattern NN cord-010027-r0tl01kq 1575 10 with with IN cord-010027-r0tl01kq 1575 11 small small JJ cord-010027-r0tl01kq 1575 12 distinct distinct JJ cord-010027-r0tl01kq 1575 13 nucleoli nucleolus NNS cord-010027-r0tl01kq 1575 14 . . . cord-010027-r0tl01kq 1576 1 The the DT cord-010027-r0tl01kq 1576 2 mucin mucin NN cord-010027-r0tl01kq 1576 3 pools pool NNS cord-010027-r0tl01kq 1576 4 stained stain VBN cord-010027-r0tl01kq 1576 5 positive positive JJ cord-010027-r0tl01kq 1576 6 for for IN cord-010027-r0tl01kq 1576 7 Alcian alcian JJ cord-010027-r0tl01kq 1576 8 blue blue NN cord-010027-r0tl01kq 1576 9 and and CC cord-010027-r0tl01kq 1576 10 dPAS dpas NN cord-010027-r0tl01kq 1576 11 . . . cord-010027-r0tl01kq 1577 1 Immunohistochemical immunohistochemical JJ cord-010027-r0tl01kq 1577 2 staining stain VBG cord-010027-r0tl01kq 1577 3 demonstrated demonstrate VBD cord-010027-r0tl01kq 1577 4 positivity positivity NN cord-010027-r0tl01kq 1577 5 for for IN cord-010027-r0tl01kq 1577 6 CEA CEA NNP cord-010027-r0tl01kq 1577 7 , , , cord-010027-r0tl01kq 1577 8 CK7 CK7 NNP cord-010027-r0tl01kq 1577 9 , , , cord-010027-r0tl01kq 1577 10 GCDFP GCDFP NNP cord-010027-r0tl01kq 1577 11 , , , cord-010027-r0tl01kq 1577 12 oestrogen oestrogen NN cord-010027-r0tl01kq 1577 13 receptor receptor NN cord-010027-r0tl01kq 1577 14 , , , cord-010027-r0tl01kq 1577 15 progesterone progesterone NN cord-010027-r0tl01kq 1577 16 receptor receptor NN cord-010027-r0tl01kq 1577 17 , , , cord-010027-r0tl01kq 1577 18 synaptophysin synaptophysin NNP cord-010027-r0tl01kq 1577 19 and and CC cord-010027-r0tl01kq 1577 20 chromogranin chromogranin NNP cord-010027-r0tl01kq 1577 21 . . . cord-010027-r0tl01kq 1578 1 Immunostaining immunostaine VBG cord-010027-r0tl01kq 1578 2 was be VBD cord-010027-r0tl01kq 1578 3 negative negative JJ cord-010027-r0tl01kq 1578 4 for for IN cord-010027-r0tl01kq 1578 5 CK20 CK20 NNP cord-010027-r0tl01kq 1578 6 , , , cord-010027-r0tl01kq 1578 7 CDX2 CDX2 NNP cord-010027-r0tl01kq 1578 8 , , , cord-010027-r0tl01kq 1578 9 CA-125 ca-125 NN cord-010027-r0tl01kq 1578 10 , , , cord-010027-r0tl01kq 1578 11 TTF-1 TTF-1 NNP cord-010027-r0tl01kq 1578 12 , , , cord-010027-r0tl01kq 1578 13 CH5/6 CH5/6 NNP cord-010027-r0tl01kq 1578 14 , , , cord-010027-r0tl01kq 1578 15 CK14 CK14 NNP cord-010027-r0tl01kq 1578 16 , , , cord-010027-r0tl01kq 1578 17 HER-2 HER-2 NNP cord-010027-r0tl01kq 1578 18 , , , cord-010027-r0tl01kq 1578 19 WT-1 WT-1 NNP cord-010027-r0tl01kq 1578 20 , , , cord-010027-r0tl01kq 1578 21 CD56 CD56 NNP cord-010027-r0tl01kq 1578 22 and and CC cord-010027-r0tl01kq 1578 23 S100 S100 NNP cord-010027-r0tl01kq 1578 24 . . . cord-010027-r0tl01kq 1579 1 Ki-67 Ki-67 . cord-010027-r0tl01kq 1580 1 proliferation proliferation NN cord-010027-r0tl01kq 1580 2 fraction fraction NN cord-010027-r0tl01kq 1580 3 was be VBD cord-010027-r0tl01kq 1580 4 approximately approximately RB cord-010027-r0tl01kq 1580 5 5 5 CD cord-010027-r0tl01kq 1580 6 % % NN cord-010027-r0tl01kq 1580 7 . . . cord-010027-r0tl01kq 1581 1 Overall overall RB cord-010027-r0tl01kq 1581 2 , , , cord-010027-r0tl01kq 1581 3 the the DT cord-010027-r0tl01kq 1581 4 findings finding NNS cord-010027-r0tl01kq 1581 5 were be VBD cord-010027-r0tl01kq 1581 6 those those DT cord-010027-r0tl01kq 1581 7 of of IN cord-010027-r0tl01kq 1581 8 a a DT cord-010027-r0tl01kq 1581 9 mucinous mucinous JJ cord-010027-r0tl01kq 1581 10 eccrine eccrine JJ cord-010027-r0tl01kq 1581 11 adenocarcinoma adenocarcinoma NN cord-010027-r0tl01kq 1581 12 with with IN cord-010027-r0tl01kq 1581 13 neuroendocrine neuroendocrine JJ cord-010027-r0tl01kq 1581 14 differentiation differentiation NN cord-010027-r0tl01kq 1581 15 . . . cord-010027-r0tl01kq 1582 1 Following follow VBG cord-010027-r0tl01kq 1582 2 multidisciplinary multidisciplinary JJ cord-010027-r0tl01kq 1582 3 discussion discussion NN cord-010027-r0tl01kq 1582 4 , , , cord-010027-r0tl01kq 1582 5 and and CC cord-010027-r0tl01kq 1582 6 negative negative JJ cord-010027-r0tl01kq 1582 7 imaging imaging NN cord-010027-r0tl01kq 1582 8 of of IN cord-010027-r0tl01kq 1582 9 the the DT cord-010027-r0tl01kq 1582 10 breasts breast NNS cord-010027-r0tl01kq 1582 11 and and CC cord-010027-r0tl01kq 1582 12 gastrointestinal gastrointestinal JJ cord-010027-r0tl01kq 1582 13 tract tract NN cord-010027-r0tl01kq 1582 14 , , , cord-010027-r0tl01kq 1582 15 a a DT cord-010027-r0tl01kq 1582 16 diagnosis diagnosis NN cord-010027-r0tl01kq 1582 17 of of IN cord-010027-r0tl01kq 1582 18 primary primary JJ cord-010027-r0tl01kq 1582 19 mucinous mucinous JJ cord-010027-r0tl01kq 1582 20 eccrine eccrine JJ cord-010027-r0tl01kq 1582 21 adenocarcinoma adenocarcinoma NN cord-010027-r0tl01kq 1582 22 of of IN cord-010027-r0tl01kq 1582 23 the the DT cord-010027-r0tl01kq 1582 24 vulva vulva NN cord-010027-r0tl01kq 1582 25 was be VBD cord-010027-r0tl01kq 1582 26 reached reach VBN cord-010027-r0tl01kq 1582 27 . . . cord-010027-r0tl01kq 1583 1 Only only RB cord-010027-r0tl01kq 1583 2 a a DT cord-010027-r0tl01kq 1583 3 handful handful NN cord-010027-r0tl01kq 1583 4 of of IN cord-010027-r0tl01kq 1583 5 cases case NNS cord-010027-r0tl01kq 1583 6 of of IN cord-010027-r0tl01kq 1583 7 primary primary JJ cord-010027-r0tl01kq 1583 8 mucinous mucinous JJ cord-010027-r0tl01kq 1583 9 eccrine eccrine JJ cord-010027-r0tl01kq 1583 10 adenocarcinoma adenocarcinoma NN cord-010027-r0tl01kq 1583 11 of of IN cord-010027-r0tl01kq 1583 12 the the DT cord-010027-r0tl01kq 1583 13 vulva vulva NN cord-010027-r0tl01kq 1583 14 have have VBP cord-010027-r0tl01kq 1583 15 been be VBN cord-010027-r0tl01kq 1583 16 reported report VBN cord-010027-r0tl01kq 1583 17 . . . cord-010027-r0tl01kq 1584 1 Metastatic metastatic JJ cord-010027-r0tl01kq 1584 2 disease disease NN cord-010027-r0tl01kq 1584 3 , , , cord-010027-r0tl01kq 1584 4 particularly particularly RB cord-010027-r0tl01kq 1584 5 from from IN cord-010027-r0tl01kq 1584 6 breast breast NN cord-010027-r0tl01kq 1584 7 and and CC cord-010027-r0tl01kq 1584 8 colon colon NN cord-010027-r0tl01kq 1584 9 , , , cord-010027-r0tl01kq 1584 10 must must MD cord-010027-r0tl01kq 1584 11 be be VB cord-010027-r0tl01kq 1584 12 excluded exclude VBN cord-010027-r0tl01kq 1584 13 . . . cord-010027-r0tl01kq 1585 1 Follow follow VB cord-010027-r0tl01kq 1585 2 up up RP cord-010027-r0tl01kq 1585 3 data datum NNS cord-010027-r0tl01kq 1585 4 from from IN cord-010027-r0tl01kq 1585 5 patients patient NNS cord-010027-r0tl01kq 1585 6 with with IN cord-010027-r0tl01kq 1585 7 primary primary JJ cord-010027-r0tl01kq 1585 8 mucinous mucinous JJ cord-010027-r0tl01kq 1585 9 eccrine eccrine JJ cord-010027-r0tl01kq 1585 10 adenocarcinoma adenocarcinoma NN cord-010027-r0tl01kq 1585 11 of of IN cord-010027-r0tl01kq 1585 12 the the DT cord-010027-r0tl01kq 1585 13 skin skin NN cord-010027-r0tl01kq 1585 14 suggests suggest VBZ cord-010027-r0tl01kq 1585 15 a a DT cord-010027-r0tl01kq 1585 16 high high JJ cord-010027-r0tl01kq 1585 17 local local JJ cord-010027-r0tl01kq 1585 18 recurrence recurrence NN cord-010027-r0tl01kq 1585 19 rate rate NN cord-010027-r0tl01kq 1585 20 ( ( -LRB- cord-010027-r0tl01kq 1585 21 29.4 29.4 CD cord-010027-r0tl01kq 1585 22 % % NN cord-010027-r0tl01kq 1585 23 ) ) -RRB- cord-010027-r0tl01kq 1585 24 , , , cord-010027-r0tl01kq 1585 25 necessitating necessitate VBG cord-010027-r0tl01kq 1585 26 close close JJ cord-010027-r0tl01kq 1585 27 follow follow NN cord-010027-r0tl01kq 1585 28 - - HYPH cord-010027-r0tl01kq 1585 29 up up NN cord-010027-r0tl01kq 1585 30 . . . cord-010027-r0tl01kq 1586 1 However however RB cord-010027-r0tl01kq 1586 2 , , , cord-010027-r0tl01kq 1586 3 risk risk NN cord-010027-r0tl01kq 1586 4 of of IN cord-010027-r0tl01kq 1586 5 metastasis metastasis NN cord-010027-r0tl01kq 1586 6 is be VBZ cord-010027-r0tl01kq 1586 7 low low JJ cord-010027-r0tl01kq 1586 8 ( ( -LRB- cord-010027-r0tl01kq 1586 9 9.6 9.6 CD cord-010027-r0tl01kq 1586 10 % % NN cord-010027-r0tl01kq 1586 11 ) ) -RRB- cord-010027-r0tl01kq 1586 12 . . . cord-010027-r0tl01kq 1587 1 Royal Royal NNP cord-010027-r0tl01kq 1587 2 Shrewsbury Shrewsbury NNP cord-010027-r0tl01kq 1587 3 Hospital Hospital NNP cord-010027-r0tl01kq 1587 4 , , , cord-010027-r0tl01kq 1587 5 Shrewsbury Shrewsbury NNP cord-010027-r0tl01kq 1587 6 , , , cord-010027-r0tl01kq 1587 7 UK UK NNP cord-010027-r0tl01kq 1587 8 Introduction introduction NN cord-010027-r0tl01kq 1587 9 : : : cord-010027-r0tl01kq 1587 10 Primary Primary NNP cord-010027-r0tl01kq 1587 11 Extraskeletal Extraskeletal NNP cord-010027-r0tl01kq 1587 12 Myxoid Myxoid NNP cord-010027-r0tl01kq 1587 13 Chondrosaroma Chondrosaroma NNP cord-010027-r0tl01kq 1587 14 ( ( -LRB- cord-010027-r0tl01kq 1587 15 EMC EMC NNP cord-010027-r0tl01kq 1587 16 ) ) -RRB- cord-010027-r0tl01kq 1587 17 of of IN cord-010027-r0tl01kq 1587 18 the the DT cord-010027-r0tl01kq 1587 19 vulva vulva NN cord-010027-r0tl01kq 1587 20 is be VBZ cord-010027-r0tl01kq 1587 21 a a DT cord-010027-r0tl01kq 1587 22 rare rare JJ cord-010027-r0tl01kq 1587 23 mesenchymal mesenchymal JJ cord-010027-r0tl01kq 1587 24 neoplasm neoplasm NN cord-010027-r0tl01kq 1587 25 . . . cord-010027-r0tl01kq 1588 1 The the DT cord-010027-r0tl01kq 1588 2 myxoid myxoid NN cord-010027-r0tl01kq 1588 3 tumour tumour NN cord-010027-r0tl01kq 1588 4 differential differential JJ cord-010027-r0tl01kq 1588 5 diagnosis diagnosis NN cord-010027-r0tl01kq 1588 6 on on IN cord-010027-r0tl01kq 1588 7 a a DT cord-010027-r0tl01kq 1588 8 core core NN cord-010027-r0tl01kq 1588 9 biopsy biopsy NN cord-010027-r0tl01kq 1588 10 can can MD cord-010027-r0tl01kq 1588 11 be be VB cord-010027-r0tl01kq 1588 12 quite quite RB cord-010027-r0tl01kq 1588 13 challinging challinge VBG cord-010027-r0tl01kq 1588 14 . . . cord-010027-r0tl01kq 1589 1 To to IN cord-010027-r0tl01kq 1589 2 date date NN cord-010027-r0tl01kq 1589 3 , , , cord-010027-r0tl01kq 1589 4 few few JJ cord-010027-r0tl01kq 1589 5 cases case NNS cord-010027-r0tl01kq 1589 6 have have VBP cord-010027-r0tl01kq 1589 7 been be VBN cord-010027-r0tl01kq 1589 8 reported report VBN cord-010027-r0tl01kq 1589 9 in in IN cord-010027-r0tl01kq 1589 10 the the DT cord-010027-r0tl01kq 1589 11 literature literature NN cord-010027-r0tl01kq 1589 12 . . . cord-010027-r0tl01kq 1590 1 Case Case NNP cord-010027-r0tl01kq 1590 2 Report Report NNP cord-010027-r0tl01kq 1590 3 : : : cord-010027-r0tl01kq 1590 4 A a DT cord-010027-r0tl01kq 1590 5 42-year 42-year JJ cord-010027-r0tl01kq 1590 6 old old JJ cord-010027-r0tl01kq 1590 7 woman woman NN cord-010027-r0tl01kq 1590 8 noticed notice VBD cord-010027-r0tl01kq 1590 9 a a DT cord-010027-r0tl01kq 1590 10 swelling swelling NN cord-010027-r0tl01kq 1590 11 on on IN cord-010027-r0tl01kq 1590 12 the the DT cord-010027-r0tl01kq 1590 13 right right JJ cord-010027-r0tl01kq 1590 14 side side NN cord-010027-r0tl01kq 1590 15 of of IN cord-010027-r0tl01kq 1590 16 the the DT cord-010027-r0tl01kq 1590 17 labia labium NNS cord-010027-r0tl01kq 1590 18 , , , cord-010027-r0tl01kq 1590 19 thought think VBD cord-010027-r0tl01kq 1590 20 to to TO cord-010027-r0tl01kq 1590 21 be be VB cord-010027-r0tl01kq 1590 22 a a DT cord-010027-r0tl01kq 1590 23 Bartholin Bartholin NNP cord-010027-r0tl01kq 1590 24 's 's POS cord-010027-r0tl01kq 1590 25 cyst cyst NN cord-010027-r0tl01kq 1590 26 in in IN cord-010027-r0tl01kq 1590 27 2011 2011 CD cord-010027-r0tl01kq 1590 28 . . . cord-010027-r0tl01kq 1591 1 She -PRON- PRP cord-010027-r0tl01kq 1591 2 was be VBD cord-010027-r0tl01kq 1591 3 managed manage VBN cord-010027-r0tl01kq 1591 4 conservatively conservatively RB cord-010027-r0tl01kq 1591 5 . . . cord-010027-r0tl01kq 1592 1 She -PRON- PRP cord-010027-r0tl01kq 1592 2 had have VBD cord-010027-r0tl01kq 1592 3 drainage drainage NN cord-010027-r0tl01kq 1592 4 and and CC cord-010027-r0tl01kq 1592 5 marsupialization marsupialization NN cord-010027-r0tl01kq 1592 6 under under IN cord-010027-r0tl01kq 1592 7 general general JJ cord-010027-r0tl01kq 1592 8 anaesthesia anaesthesia NN cord-010027-r0tl01kq 1592 9 . . . cord-010027-r0tl01kq 1593 1 This this DT cord-010027-r0tl01kq 1593 2 resulted result VBD cord-010027-r0tl01kq 1593 3 in in IN cord-010027-r0tl01kq 1593 4 extreme extreme JJ cord-010027-r0tl01kq 1593 5 bruising bruising NN cord-010027-r0tl01kq 1593 6 of of IN cord-010027-r0tl01kq 1593 7 the the DT cord-010027-r0tl01kq 1593 8 vulva vulva NN cord-010027-r0tl01kq 1593 9 . . . cord-010027-r0tl01kq 1594 1 This this DT cord-010027-r0tl01kq 1594 2 was be VBD cord-010027-r0tl01kq 1594 3 managed manage VBN cord-010027-r0tl01kq 1594 4 with with IN cord-010027-r0tl01kq 1594 5 antibiotics antibiotic NNS cord-010027-r0tl01kq 1594 6 and and CC cord-010027-r0tl01kq 1594 7 non non JJ cord-010027-r0tl01kq 1594 8 - - JJ cord-010027-r0tl01kq 1594 9 steroidal steroidal JJ cord-010027-r0tl01kq 1594 10 anti anti JJ cord-010027-r0tl01kq 1594 11 - - JJ cord-010027-r0tl01kq 1594 12 inflammatory inflammatory JJ cord-010027-r0tl01kq 1594 13 medication medication NN cord-010027-r0tl01kq 1594 14 , , , cord-010027-r0tl01kq 1594 15 and and CC cord-010027-r0tl01kq 1594 16 it -PRON- PRP cord-010027-r0tl01kq 1594 17 resolved resolve VBD cord-010027-r0tl01kq 1594 18 after after IN cord-010027-r0tl01kq 1594 19 3 3 CD cord-010027-r0tl01kq 1594 20 weeks week NNS cord-010027-r0tl01kq 1594 21 . . . cord-010027-r0tl01kq 1595 1 Six six CD cord-010027-r0tl01kq 1595 2 months month NNS cord-010027-r0tl01kq 1595 3 later later RB cord-010027-r0tl01kq 1595 4 , , , cord-010027-r0tl01kq 1595 5 the the DT cord-010027-r0tl01kq 1595 6 patient patient NN cord-010027-r0tl01kq 1595 7 presented present VBN cord-010027-r0tl01kq 1595 8 again again RB cord-010027-r0tl01kq 1595 9 with with IN cord-010027-r0tl01kq 1595 10 a a DT cord-010027-r0tl01kq 1595 11 persistent persistent JJ cord-010027-r0tl01kq 1595 12 vulval vulval JJ cord-010027-r0tl01kq 1595 13 mass mass NN cord-010027-r0tl01kq 1595 14 . . . cord-010027-r0tl01kq 1596 1 A a DT cord-010027-r0tl01kq 1596 2 biopsy biopsy NN cord-010027-r0tl01kq 1596 3 was be VBD cord-010027-r0tl01kq 1596 4 obtained obtain VBN cord-010027-r0tl01kq 1596 5 under under IN cord-010027-r0tl01kq 1596 6 general general JJ cord-010027-r0tl01kq 1596 7 anaesthesia anaesthesia NN cord-010027-r0tl01kq 1596 8 , , , cord-010027-r0tl01kq 1596 9 and and CC cord-010027-r0tl01kq 1596 10 it -PRON- PRP cord-010027-r0tl01kq 1596 11 showed show VBD cord-010027-r0tl01kq 1596 12 a a DT cord-010027-r0tl01kq 1596 13 myxoid myxoid NN cord-010027-r0tl01kq 1596 14 tumour tumour NN cord-010027-r0tl01kq 1596 15 with with IN cord-010027-r0tl01kq 1596 16 differential differential JJ cord-010027-r0tl01kq 1596 17 diagnosis diagnosis NN cord-010027-r0tl01kq 1596 18 of of IN cord-010027-r0tl01kq 1596 19 low low JJ cord-010027-r0tl01kq 1596 20 grade grade NN cord-010027-r0tl01kq 1596 21 chondroid chondroid NN cord-010027-r0tl01kq 1596 22 tumour tumour NN cord-010027-r0tl01kq 1596 23 . . . cord-010027-r0tl01kq 1597 1 An an DT cord-010027-r0tl01kq 1597 2 MRI MRI NNP cord-010027-r0tl01kq 1597 3 was be VBD cord-010027-r0tl01kq 1597 4 performed perform VBN cord-010027-r0tl01kq 1597 5 to to TO cord-010027-r0tl01kq 1597 6 assess assess VB cord-010027-r0tl01kq 1597 7 the the DT cord-010027-r0tl01kq 1597 8 extent extent NN cord-010027-r0tl01kq 1597 9 of of IN cord-010027-r0tl01kq 1597 10 the the DT cord-010027-r0tl01kq 1597 11 disease disease NN cord-010027-r0tl01kq 1597 12 . . . cord-010027-r0tl01kq 1598 1 The the DT cord-010027-r0tl01kq 1598 2 tumour tumour NN cord-010027-r0tl01kq 1598 3 was be VBD cord-010027-r0tl01kq 1598 4 excised excise VBN cord-010027-r0tl01kq 1598 5 . . . cord-010027-r0tl01kq 1599 1 At at IN cord-010027-r0tl01kq 1599 2 surgery surgery NN cord-010027-r0tl01kq 1599 3 , , , cord-010027-r0tl01kq 1599 4 a a DT cord-010027-r0tl01kq 1599 5 7 7 CD cord-010027-r0tl01kq 1599 6 x x SYM cord-010027-r0tl01kq 1599 7 5 5 CD cord-010027-r0tl01kq 1599 8 cm cm NNS cord-010027-r0tl01kq 1599 9 lobulated lobulate VBN cord-010027-r0tl01kq 1599 10 , , , cord-010027-r0tl01kq 1599 11 extremely extremely RB cord-010027-r0tl01kq 1599 12 vascular vascular JJ cord-010027-r0tl01kq 1599 13 vulval vulval JJ cord-010027-r0tl01kq 1599 14 tumour tumour NN cord-010027-r0tl01kq 1599 15 was be VBD cord-010027-r0tl01kq 1599 16 found find VBN cord-010027-r0tl01kq 1599 17 . . . cord-010027-r0tl01kq 1600 1 The the DT cord-010027-r0tl01kq 1600 2 tumour tumour NN cord-010027-r0tl01kq 1600 3 was be VBD cord-010027-r0tl01kq 1600 4 inseparable inseparable JJ cord-010027-r0tl01kq 1600 5 from from IN cord-010027-r0tl01kq 1600 6 the the DT cord-010027-r0tl01kq 1600 7 inferior inferior JJ cord-010027-r0tl01kq 1600 8 pubic pubic NN cord-010027-r0tl01kq 1600 9 ramus ramus NN cord-010027-r0tl01kq 1600 10 of of IN cord-010027-r0tl01kq 1600 11 the the DT cord-010027-r0tl01kq 1600 12 pelvic pelvic JJ cord-010027-r0tl01kq 1600 13 bone bone NN cord-010027-r0tl01kq 1600 14 . . . cord-010027-r0tl01kq 1601 1 A a DT cord-010027-r0tl01kq 1601 2 complete complete JJ cord-010027-r0tl01kq 1601 3 macroscopic macroscopic JJ cord-010027-r0tl01kq 1601 4 resection resection NN cord-010027-r0tl01kq 1601 5 was be VBD cord-010027-r0tl01kq 1601 6 obtained obtain VBN cord-010027-r0tl01kq 1601 7 . . . cord-010027-r0tl01kq 1602 1 Histology histology NN cord-010027-r0tl01kq 1602 2 confirmed confirm VBD cord-010027-r0tl01kq 1602 3 low low JJ cord-010027-r0tl01kq 1602 4 grade grade NN cord-010027-r0tl01kq 1602 5 myxoid myxoid NN cord-010027-r0tl01kq 1602 6 chondrosarcoma chondrosarcoma NNP cord-010027-r0tl01kq 1602 7 . . . cord-010027-r0tl01kq 1603 1 Conculsion Conculsion NNP cord-010027-r0tl01kq 1603 2 : : : cord-010027-r0tl01kq 1604 1 Vulval Vulval NNP cord-010027-r0tl01kq 1604 2 lesions lesion NNS cord-010027-r0tl01kq 1604 3 with with IN cord-010027-r0tl01kq 1604 4 unusual unusual JJ cord-010027-r0tl01kq 1604 5 characteristics characteristic NNS cord-010027-r0tl01kq 1604 6 or or CC cord-010027-r0tl01kq 1604 7 insidious insidious JJ cord-010027-r0tl01kq 1604 8 evolution evolution NN cord-010027-r0tl01kq 1604 9 in in IN cord-010027-r0tl01kq 1604 10 the the DT cord-010027-r0tl01kq 1604 11 labia labium NNS cord-010027-r0tl01kq 1604 12 majora majora NNP cord-010027-r0tl01kq 1604 13 or or CC cord-010027-r0tl01kq 1604 14 Bartholin Bartholin NNP cord-010027-r0tl01kq 1604 15 's 's POS cord-010027-r0tl01kq 1604 16 glands gland NNS cord-010027-r0tl01kq 1604 17 area area NN cord-010027-r0tl01kq 1604 18 should should MD cord-010027-r0tl01kq 1604 19 be be VB cord-010027-r0tl01kq 1604 20 carefully carefully RB cord-010027-r0tl01kq 1604 21 and and CC cord-010027-r0tl01kq 1604 22 promptly promptly RB cord-010027-r0tl01kq 1604 23 investigated investigate VBD cord-010027-r0tl01kq 1604 24 . . . cord-010027-r0tl01kq 1605 1 Differential differential JJ cord-010027-r0tl01kq 1605 2 diagnosis diagnosis NN cord-010027-r0tl01kq 1605 3 of of IN cord-010027-r0tl01kq 1605 4 myxoid myxoid NN cord-010027-r0tl01kq 1605 5 tumours tumour NNS cord-010027-r0tl01kq 1605 6 in in IN cord-010027-r0tl01kq 1605 7 the the DT cord-010027-r0tl01kq 1605 8 vulva vulva NN cord-010027-r0tl01kq 1605 9 should should MD cord-010027-r0tl01kq 1605 10 include include VB cord-010027-r0tl01kq 1605 11 myxoid myxoid NNP cord-010027-r0tl01kq 1605 12 chondrosarcoma chondrosarcoma NNP cord-010027-r0tl01kq 1605 13 amongst amongst IN cord-010027-r0tl01kq 1605 14 other other JJ cord-010027-r0tl01kq 1605 15 diagnoses diagnosis NNS cord-010027-r0tl01kq 1605 16 . . . cord-010027-r0tl01kq 1606 1 ( ( -LRB- cord-010027-r0tl01kq 1606 2 FISH FISH NNP cord-010027-r0tl01kq 1606 3 ) ) -RRB- cord-010027-r0tl01kq 1606 4 showed show VBD cord-010027-r0tl01kq 1606 5 the the DT cord-010027-r0tl01kq 1606 6 presence presence NN cord-010027-r0tl01kq 1606 7 of of IN cord-010027-r0tl01kq 1606 8 a a DT cord-010027-r0tl01kq 1606 9 BCL2 BCL2 NNP cord-010027-r0tl01kq 1606 10 rearrangement rearrangement NN cord-010027-r0tl01kq 1606 11 in in IN cord-010027-r0tl01kq 1606 12 a a DT cord-010027-r0tl01kq 1606 13 proportion proportion NN cord-010027-r0tl01kq 1606 14 of of IN cord-010027-r0tl01kq 1606 15 cells cell NNS cord-010027-r0tl01kq 1606 16 . . . cord-010027-r0tl01kq 1607 1 Therefore therefore RB cord-010027-r0tl01kq 1607 2 this this DT cord-010027-r0tl01kq 1607 3 case case NN cord-010027-r0tl01kq 1607 4 is be VBZ cord-010027-r0tl01kq 1607 5 best well RBS cord-010027-r0tl01kq 1607 6 regarded regard VBN cord-010027-r0tl01kq 1607 7 as as IN cord-010027-r0tl01kq 1607 8 a a DT cord-010027-r0tl01kq 1607 9 composite composite JJ cord-010027-r0tl01kq 1607 10 lymphoma lymphoma NN cord-010027-r0tl01kq 1607 11 of of IN cord-010027-r0tl01kq 1607 12 diffuse diffuse JJ cord-010027-r0tl01kq 1607 13 large large JJ cord-010027-r0tl01kq 1607 14 B b NN cord-010027-r0tl01kq 1607 15 cell cell NN cord-010027-r0tl01kq 1607 16 lymphoma lymphoma NN cord-010027-r0tl01kq 1607 17 with with IN cord-010027-r0tl01kq 1607 18 hairy hairy JJ cord-010027-r0tl01kq 1607 19 cell cell NN cord-010027-r0tl01kq 1607 20 leukemia leukemia NN cord-010027-r0tl01kq 1607 21 rather rather RB cord-010027-r0tl01kq 1607 22 than than IN cord-010027-r0tl01kq 1607 23 blastic blastic JJ cord-010027-r0tl01kq 1607 24 transformation transformation NN cord-010027-r0tl01kq 1607 25 of of IN cord-010027-r0tl01kq 1607 26 hairy hairy JJ cord-010027-r0tl01kq 1607 27 cell cell NN cord-010027-r0tl01kq 1607 28 leukemia leukemia NN cord-010027-r0tl01kq 1607 29 . . . cord-010027-r0tl01kq 1608 1 To to IN cord-010027-r0tl01kq 1608 2 the the DT cord-010027-r0tl01kq 1608 3 best good JJS cord-010027-r0tl01kq 1608 4 of of IN cord-010027-r0tl01kq 1608 5 our -PRON- PRP$ cord-010027-r0tl01kq 1608 6 knowledge knowledge NN cord-010027-r0tl01kq 1608 7 , , , cord-010027-r0tl01kq 1608 8 simultaneous simultaneous JJ cord-010027-r0tl01kq 1608 9 occurrence occurrence NN cord-010027-r0tl01kq 1608 10 of of IN cord-010027-r0tl01kq 1608 11 diffuse diffuse JJ cord-010027-r0tl01kq 1608 12 large large JJ cord-010027-r0tl01kq 1608 13 B b NN cord-010027-r0tl01kq 1608 14 cell cell NN cord-010027-r0tl01kq 1608 15 lymphoma lymphoma NN cord-010027-r0tl01kq 1608 16 and and CC cord-010027-r0tl01kq 1608 17 hairy hairy JJ cord-010027-r0tl01kq 1608 18 cell cell NN cord-010027-r0tl01kq 1608 19 leukemia leukemia NN cord-010027-r0tl01kq 1608 20 in in IN cord-010027-r0tl01kq 1608 21 a a DT cord-010027-r0tl01kq 1608 22 lymph lymph NN cord-010027-r0tl01kq 1608 23 node node NN cord-010027-r0tl01kq 1608 24 has have VBZ cord-010027-r0tl01kq 1608 25 not not RB cord-010027-r0tl01kq 1608 26 yet yet RB cord-010027-r0tl01kq 1608 27 been be VBN cord-010027-r0tl01kq 1608 28 reported report VBN cord-010027-r0tl01kq 1608 29 in in IN cord-010027-r0tl01kq 1608 30 the the DT cord-010027-r0tl01kq 1608 31 literature literature NN cord-010027-r0tl01kq 1608 32 . . . cord-010027-r0tl01kq 1609 1 Bone bone NN cord-010027-r0tl01kq 1609 2 marrow marrow NN cord-010027-r0tl01kq 1609 3 examination examination NN cord-010027-r0tl01kq 1609 4 by by IN cord-010027-r0tl01kq 1609 5 aspirate aspirate NN cord-010027-r0tl01kq 1609 6 and and CC cord-010027-r0tl01kq 1609 7 trephine trephine NNP cord-010027-r0tl01kq 1609 8 biopsy biopsy NN cord-010027-r0tl01kq 1609 9 is be VBZ cord-010027-r0tl01kq 1609 10 an an DT cord-010027-r0tl01kq 1609 11 important important JJ cord-010027-r0tl01kq 1609 12 haematological haematological JJ cord-010027-r0tl01kq 1609 13 investigation investigation NN cord-010027-r0tl01kq 1609 14 . . . cord-010027-r0tl01kq 1610 1 Ideally ideally RB cord-010027-r0tl01kq 1610 2 , , , cord-010027-r0tl01kq 1610 3 aspirate aspirate VB cord-010027-r0tl01kq 1610 4 findings finding NNS cord-010027-r0tl01kq 1610 5 should should MD cord-010027-r0tl01kq 1610 6 inform inform VB cord-010027-r0tl01kq 1610 7 examination examination NN cord-010027-r0tl01kq 1610 8 of of IN cord-010027-r0tl01kq 1610 9 the the DT cord-010027-r0tl01kq 1610 10 trephine trephine NNP cord-010027-r0tl01kq 1610 11 biopsy biopsy NNP cord-010027-r0tl01kq 1610 12 , , , cord-010027-r0tl01kq 1610 13 but but CC cord-010027-r0tl01kq 1610 14 if if IN cord-010027-r0tl01kq 1610 15 the the DT cord-010027-r0tl01kq 1610 16 two two CD cord-010027-r0tl01kq 1610 17 modalities modality NNS cord-010027-r0tl01kq 1610 18 are be VBP cord-010027-r0tl01kq 1610 19 separate separate JJ cord-010027-r0tl01kq 1610 20 the the DT cord-010027-r0tl01kq 1610 21 aspirate aspirate NN cord-010027-r0tl01kq 1610 22 report report NN cord-010027-r0tl01kq 1610 23 can can MD cord-010027-r0tl01kq 1610 24 be be VB cord-010027-r0tl01kq 1610 25 delayed delay VBN cord-010027-r0tl01kq 1610 26 and and CC cord-010027-r0tl01kq 1610 27 histopathologists histopathologist NNS cord-010027-r0tl01kq 1610 28 may may MD cord-010027-r0tl01kq 1610 29 assess assess VB cord-010027-r0tl01kq 1610 30 the the DT cord-010027-r0tl01kq 1610 31 trephine trephine NNP cord-010027-r0tl01kq 1610 32 biopsy biopsy NN cord-010027-r0tl01kq 1610 33 without without IN cord-010027-r0tl01kq 1610 34 being be VBG cord-010027-r0tl01kq 1610 35 aware aware JJ cord-010027-r0tl01kq 1610 36 of of IN cord-010027-r0tl01kq 1610 37 the the DT cord-010027-r0tl01kq 1610 38 aspirate aspirate NN cord-010027-r0tl01kq 1610 39 findings finding NNS cord-010027-r0tl01kq 1610 40 . . . cord-010027-r0tl01kq 1611 1 We -PRON- PRP cord-010027-r0tl01kq 1611 2 audited audit VBD cord-010027-r0tl01kq 1611 3 the the DT cord-010027-r0tl01kq 1611 4 availability availability NN cord-010027-r0tl01kq 1611 5 of of IN cord-010027-r0tl01kq 1611 6 aspirate aspirate NN cord-010027-r0tl01kq 1611 7 results result NNS cord-010027-r0tl01kq 1611 8 to to IN cord-010027-r0tl01kq 1611 9 the the DT cord-010027-r0tl01kq 1611 10 histopathologist histopathologist NN cord-010027-r0tl01kq 1611 11 examining examine VBG cord-010027-r0tl01kq 1611 12 trephine trephine JJ cord-010027-r0tl01kq 1611 13 biopsies biopsy NNS cord-010027-r0tl01kq 1611 14 , , , cord-010027-r0tl01kq 1611 15 over over IN cord-010027-r0tl01kq 1611 16 the the DT cord-010027-r0tl01kq 1611 17 period period NN cord-010027-r0tl01kq 1611 18 in in IN cord-010027-r0tl01kq 1611 19 which which WDT cord-010027-r0tl01kq 1611 20 our -PRON- PRP$ cord-010027-r0tl01kq 1611 21 department department NN cord-010027-r0tl01kq 1611 22 implemented implement VBD cord-010027-r0tl01kq 1611 23 an an DT cord-010027-r0tl01kq 1611 24 integrated integrated JJ cord-010027-r0tl01kq 1611 25 haematopathology haematopathology NN cord-010027-r0tl01kq 1611 26 reporting report VBG cord-010027-r0tl01kq 1611 27 system system NN cord-010027-r0tl01kq 1611 28 . . . cord-010027-r0tl01kq 1612 1 The the DT cord-010027-r0tl01kq 1612 2 effects effect NNS cord-010027-r0tl01kq 1612 3 on on IN cord-010027-r0tl01kq 1612 4 diagnostic diagnostic JJ cord-010027-r0tl01kq 1612 5 concordance concordance NN cord-010027-r0tl01kq 1612 6 , , , cord-010027-r0tl01kq 1612 7 turnaround turnaround NN cord-010027-r0tl01kq 1612 8 times time NNS cord-010027-r0tl01kq 1612 9 and and CC cord-010027-r0tl01kq 1612 10 immunohistochemistry immunohistochemistry NN cord-010027-r0tl01kq 1612 11 requesting request VBG cord-010027-r0tl01kq 1612 12 were be VBD cord-010027-r0tl01kq 1612 13 also also RB cord-010027-r0tl01kq 1612 14 assessed assess VBN cord-010027-r0tl01kq 1612 15 . . . cord-010027-r0tl01kq 1613 1 The the DT cord-010027-r0tl01kq 1613 2 setting setting NN cord-010027-r0tl01kq 1613 3 was be VBD cord-010027-r0tl01kq 1613 4 a a DT cord-010027-r0tl01kq 1613 5 regional regional JJ cord-010027-r0tl01kq 1613 6 specialist specialist NN cord-010027-r0tl01kq 1613 7 haematopathology haematopathology NN cord-010027-r0tl01kq 1613 8 centre centre NN cord-010027-r0tl01kq 1613 9 . . . cord-010027-r0tl01kq 1614 1 Prior prior RB cord-010027-r0tl01kq 1614 2 to to IN cord-010027-r0tl01kq 1614 3 integration integration NN cord-010027-r0tl01kq 1614 4 , , , cord-010027-r0tl01kq 1614 5 a a DT cord-010027-r0tl01kq 1614 6 prospective prospective JJ cord-010027-r0tl01kq 1614 7 audit audit NN cord-010027-r0tl01kq 1614 8 of of IN cord-010027-r0tl01kq 1614 9 101 101 CD cord-010027-r0tl01kq 1614 10 consecutive consecutive JJ cord-010027-r0tl01kq 1614 11 trephine trephine NN cord-010027-r0tl01kq 1614 12 biopsies biopsy NNS cord-010027-r0tl01kq 1614 13 received receive VBN cord-010027-r0tl01kq 1614 14 by by IN cord-010027-r0tl01kq 1614 15 a a DT cord-010027-r0tl01kq 1614 16 senior senior JJ cord-010027-r0tl01kq 1614 17 haematopathologist haematopathologist NN cord-010027-r0tl01kq 1614 18 was be VBD cord-010027-r0tl01kq 1614 19 carried carry VBN cord-010027-r0tl01kq 1614 20 out out RP cord-010027-r0tl01kq 1614 21 , , , cord-010027-r0tl01kq 1614 22 against against IN cord-010027-r0tl01kq 1614 23 standards standard NNS cord-010027-r0tl01kq 1614 24 set set VBN cord-010027-r0tl01kq 1614 25 by by IN cord-010027-r0tl01kq 1614 26 the the DT cord-010027-r0tl01kq 1614 27 International International NNP cord-010027-r0tl01kq 1614 28 Committee Committee NNP cord-010027-r0tl01kq 1614 29 for for IN cord-010027-r0tl01kq 1614 30 Standardisation Standardisation NNP cord-010027-r0tl01kq 1614 31 in in IN cord-010027-r0tl01kq 1614 32 Haematology Haematology NNP cord-010027-r0tl01kq 1614 33 . . . cord-010027-r0tl01kq 1615 1 Data datum NNS cord-010027-r0tl01kq 1615 2 were be VBD cord-010027-r0tl01kq 1615 3 collected collect VBN cord-010027-r0tl01kq 1615 4 from from IN cord-010027-r0tl01kq 1615 5 hospital hospital NN cord-010027-r0tl01kq 1615 6 computer computer NN cord-010027-r0tl01kq 1615 7 systems system NNS cord-010027-r0tl01kq 1615 8 . . . cord-010027-r0tl01kq 1616 1 The the DT cord-010027-r0tl01kq 1616 2 move move NN cord-010027-r0tl01kq 1616 3 to to IN cord-010027-r0tl01kq 1616 4 integrated integrate VBN cord-010027-r0tl01kq 1616 5 reporting reporting NN cord-010027-r0tl01kq 1616 6 involved involve VBD cord-010027-r0tl01kq 1616 7 the the DT cord-010027-r0tl01kq 1616 8 installation installation NN cord-010027-r0tl01kq 1616 9 of of IN cord-010027-r0tl01kq 1616 10 new new JJ cord-010027-r0tl01kq 1616 11 software software NN cord-010027-r0tl01kq 1616 12 ( ( -LRB- cord-010027-r0tl01kq 1616 13 HiLIS HiLIS NNPS cord-010027-r0tl01kq 1616 14 ) ) -RRB- cord-010027-r0tl01kq 1616 15 to to TO cord-010027-r0tl01kq 1616 16 specifically specifically RB cord-010027-r0tl01kq 1616 17 handle handle VB cord-010027-r0tl01kq 1616 18 integrated integrated JJ cord-010027-r0tl01kq 1616 19 haematopathology haematopathology NN cord-010027-r0tl01kq 1616 20 data datum NNS cord-010027-r0tl01kq 1616 21 . . . cord-010027-r0tl01kq 1617 1 Ten ten CD cord-010027-r0tl01kq 1617 2 months month NNS cord-010027-r0tl01kq 1617 3 later later RB cord-010027-r0tl01kq 1617 4 , , , cord-010027-r0tl01kq 1617 5 a a DT cord-010027-r0tl01kq 1617 6 retrospective retrospective JJ cord-010027-r0tl01kq 1617 7 analysis analysis NN cord-010027-r0tl01kq 1617 8 of of IN cord-010027-r0tl01kq 1617 9 a a DT cord-010027-r0tl01kq 1617 10 further further JJ cord-010027-r0tl01kq 1617 11 100 100 CD cord-010027-r0tl01kq 1617 12 cases case NNS cord-010027-r0tl01kq 1617 13 was be VBD cord-010027-r0tl01kq 1617 14 performed perform VBN cord-010027-r0tl01kq 1617 15 using use VBG cord-010027-r0tl01kq 1617 16 HiLIS HiLIS NNPS cord-010027-r0tl01kq 1617 17 data datum NNS cord-010027-r0tl01kq 1617 18 . . . cord-010027-r0tl01kq 1618 1 Prior prior RB cord-010027-r0tl01kq 1618 2 to to IN cord-010027-r0tl01kq 1618 3 integration integration NN cord-010027-r0tl01kq 1618 4 , , , cord-010027-r0tl01kq 1618 5 35 35 CD cord-010027-r0tl01kq 1618 6 % % NN cord-010027-r0tl01kq 1618 7 of of IN cord-010027-r0tl01kq 1618 8 aspirates aspirate NNS cord-010027-r0tl01kq 1618 9 were be VBD cord-010027-r0tl01kq 1618 10 reported report VBN cord-010027-r0tl01kq 1618 11 within within IN cord-010027-r0tl01kq 1618 12 3 3 CD cord-010027-r0tl01kq 1618 13 days day NNS cord-010027-r0tl01kq 1618 14 , , , cord-010027-r0tl01kq 1618 15 and and CC cord-010027-r0tl01kq 1618 16 access access VB cord-010027-r0tl01kq 1618 17 to to IN cord-010027-r0tl01kq 1618 18 the the DT cord-010027-r0tl01kq 1618 19 aspirate aspirate NN cord-010027-r0tl01kq 1618 20 report report NN cord-010027-r0tl01kq 1618 21 was be VBD cord-010027-r0tl01kq 1618 22 available available JJ cord-010027-r0tl01kq 1618 23 at at IN cord-010027-r0tl01kq 1618 24 time time NN cord-010027-r0tl01kq 1618 25 of of IN cord-010027-r0tl01kq 1618 26 examination examination NN cord-010027-r0tl01kq 1618 27 for for IN cord-010027-r0tl01kq 1618 28 61 61 CD cord-010027-r0tl01kq 1618 29 % % NN cord-010027-r0tl01kq 1618 30 of of IN cord-010027-r0tl01kq 1618 31 trephine trephine NN cord-010027-r0tl01kq 1618 32 biopsies biopsy NNS cord-010027-r0tl01kq 1618 33 . . . cord-010027-r0tl01kq 1619 1 After after IN cord-010027-r0tl01kq 1619 2 integration integration NN cord-010027-r0tl01kq 1619 3 , , , cord-010027-r0tl01kq 1619 4 96 96 CD cord-010027-r0tl01kq 1619 5 % % NN cord-010027-r0tl01kq 1619 6 of of IN cord-010027-r0tl01kq 1619 7 aspirates aspirate NNS cord-010027-r0tl01kq 1619 8 were be VBD cord-010027-r0tl01kq 1619 9 reported report VBN cord-010027-r0tl01kq 1619 10 within within IN cord-010027-r0tl01kq 1619 11 3 3 CD cord-010027-r0tl01kq 1619 12 days day NNS cord-010027-r0tl01kq 1619 13 , , , cord-010027-r0tl01kq 1619 14 and and CC cord-010027-r0tl01kq 1619 15 reports report NNS cord-010027-r0tl01kq 1619 16 were be VBD cord-010027-r0tl01kq 1619 17 available available JJ cord-010027-r0tl01kq 1619 18 at at IN cord-010027-r0tl01kq 1619 19 time time NN cord-010027-r0tl01kq 1619 20 of of IN cord-010027-r0tl01kq 1619 21 examination examination NN cord-010027-r0tl01kq 1619 22 for for IN cord-010027-r0tl01kq 1619 23 100 100 CD cord-010027-r0tl01kq 1619 24 % % NN cord-010027-r0tl01kq 1619 25 of of IN cord-010027-r0tl01kq 1619 26 trephine trephine NN cord-010027-r0tl01kq 1619 27 biopsies biopsy NNS cord-010027-r0tl01kq 1619 28 . . . cord-010027-r0tl01kq 1620 1 Diagnostic diagnostic JJ cord-010027-r0tl01kq 1620 2 concordance concordance NN cord-010027-r0tl01kq 1620 3 was be VBD cord-010027-r0tl01kq 1620 4 72 72 CD cord-010027-r0tl01kq 1620 5 % % NN cord-010027-r0tl01kq 1620 6 initially initially RB cord-010027-r0tl01kq 1620 7 , , , cord-010027-r0tl01kq 1620 8 and and CC cord-010027-r0tl01kq 1620 9 100 100 CD cord-010027-r0tl01kq 1620 10 % % NN cord-010027-r0tl01kq 1620 11 after after IN cord-010027-r0tl01kq 1620 12 integration integration NN cord-010027-r0tl01kq 1620 13 . . . cord-010027-r0tl01kq 1621 1 The the DT cord-010027-r0tl01kq 1621 2 mean mean JJ cord-010027-r0tl01kq 1621 3 number number NN cord-010027-r0tl01kq 1621 4 of of IN cord-010027-r0tl01kq 1621 5 immunostains immunostain NNS cord-010027-r0tl01kq 1621 6 requested request VBN cord-010027-r0tl01kq 1621 7 per per IN cord-010027-r0tl01kq 1621 8 case case NN cord-010027-r0tl01kq 1621 9 was be VBD cord-010027-r0tl01kq 1621 10 unchanged unchanged JJ cord-010027-r0tl01kq 1621 11 ( ( -LRB- cord-010027-r0tl01kq 1621 12 5.9 5.9 CD cord-010027-r0tl01kq 1621 13 vs vs IN cord-010027-r0tl01kq 1621 14 5.7 5.7 CD cord-010027-r0tl01kq 1621 15 ) ) -RRB- cord-010027-r0tl01kq 1621 16 . . . cord-010027-r0tl01kq 1622 1 Our -PRON- PRP$ cord-010027-r0tl01kq 1622 2 findings finding NNS cord-010027-r0tl01kq 1622 3 show show VBP cord-010027-r0tl01kq 1622 4 integrated integrated JJ cord-010027-r0tl01kq 1622 5 reporting reporting NN cord-010027-r0tl01kq 1622 6 has have VBZ cord-010027-r0tl01kq 1622 7 markedly markedly RB cord-010027-r0tl01kq 1622 8 increased increase VBN cord-010027-r0tl01kq 1622 9 the the DT cord-010027-r0tl01kq 1622 10 availability availability NN cord-010027-r0tl01kq 1622 11 of of IN cord-010027-r0tl01kq 1622 12 aspirate aspirate NN cord-010027-r0tl01kq 1622 13 reports report NNS cord-010027-r0tl01kq 1622 14 to to IN cord-010027-r0tl01kq 1622 15 the the DT cord-010027-r0tl01kq 1622 16 histopathologist histopathologist NN cord-010027-r0tl01kq 1622 17 , , , cord-010027-r0tl01kq 1622 18 and and CC cord-010027-r0tl01kq 1622 19 improved improve VBN cord-010027-r0tl01kq 1622 20 diagnostic diagnostic JJ cord-010027-r0tl01kq 1622 21 concordance concordance NN cord-010027-r0tl01kq 1622 22 . . . cord-010027-r0tl01kq 1623 1 This this DT cord-010027-r0tl01kq 1623 2 new new JJ cord-010027-r0tl01kq 1623 3 model model NN cord-010027-r0tl01kq 1623 4 benefits benefit VBZ cord-010027-r0tl01kq 1623 5 the the DT cord-010027-r0tl01kq 1623 6 haematologist haematologist NN cord-010027-r0tl01kq 1623 7 , , , cord-010027-r0tl01kq 1623 8 histopathologist histopathologist NN cord-010027-r0tl01kq 1623 9 and and CC cord-010027-r0tl01kq 1623 10 patient patient JJ cord-010027-r0tl01kq 1623 11 . . . cord-010027-r0tl01kq 1624 1 Introduction introduction NN cord-010027-r0tl01kq 1624 2 : : : cord-010027-r0tl01kq 1625 1 Clonality clonality NN cord-010027-r0tl01kq 1625 2 studies study NNS cord-010027-r0tl01kq 1625 3 are be VBP cord-010027-r0tl01kq 1625 4 carried carry VBN cord-010027-r0tl01kq 1625 5 out out RP cord-010027-r0tl01kq 1625 6 when when WRB cord-010027-r0tl01kq 1625 7 the the DT cord-010027-r0tl01kq 1625 8 diagnosis diagnosis NN cord-010027-r0tl01kq 1625 9 of of IN cord-010027-r0tl01kq 1625 10 lymphoma lymphoma NN cord-010027-r0tl01kq 1625 11 is be VBZ cord-010027-r0tl01kq 1625 12 particularly particularly RB cord-010027-r0tl01kq 1625 13 challenging challenging JJ cord-010027-r0tl01kq 1625 14 . . . cord-010027-r0tl01kq 1626 1 The the DT cord-010027-r0tl01kq 1626 2 detection detection NN cord-010027-r0tl01kq 1626 3 of of IN cord-010027-r0tl01kq 1626 4 clonality clonality NN cord-010027-r0tl01kq 1626 5 in in IN cord-010027-r0tl01kq 1626 6 lymphoproliferative lymphoproliferative JJ cord-010027-r0tl01kq 1626 7 lesions lesion NNS cord-010027-r0tl01kq 1626 8 suspicious suspicious JJ cord-010027-r0tl01kq 1626 9 for for IN cord-010027-r0tl01kq 1626 10 lymphoma lymphoma NN cord-010027-r0tl01kq 1626 11 can can MD cord-010027-r0tl01kq 1626 12 be be VB cord-010027-r0tl01kq 1626 13 a a DT cord-010027-r0tl01kq 1626 14 valuable valuable JJ cord-010027-r0tl01kq 1626 15 supplementary supplementary JJ cord-010027-r0tl01kq 1626 16 tool tool NN cord-010027-r0tl01kq 1626 17 as as IN cord-010027-r0tl01kq 1626 18 it -PRON- PRP cord-010027-r0tl01kq 1626 19 has have VBZ cord-010027-r0tl01kq 1626 20 a a DT cord-010027-r0tl01kq 1626 21 high high JJ cord-010027-r0tl01kq 1626 22 positive positive JJ cord-010027-r0tl01kq 1626 23 predictive predictive JJ cord-010027-r0tl01kq 1626 24 value value NN cord-010027-r0tl01kq 1626 25 . . . cord-010027-r0tl01kq 1627 1 Clonal Clonal NNP cord-010027-r0tl01kq 1627 2 studies study NNS cord-010027-r0tl01kq 1627 3 can can MD cord-010027-r0tl01kq 1627 4 also also RB cord-010027-r0tl01kq 1627 5 help help VB cord-010027-r0tl01kq 1627 6 to to TO cord-010027-r0tl01kq 1627 7 distinguish distinguish VB cord-010027-r0tl01kq 1627 8 recurrent recurrent JJ cord-010027-r0tl01kq 1627 9 or or CC cord-010027-r0tl01kq 1627 10 residual residual JJ cord-010027-r0tl01kq 1627 11 disease disease NN cord-010027-r0tl01kq 1627 12 from from IN cord-010027-r0tl01kq 1627 13 reactive reactive JJ cord-010027-r0tl01kq 1627 14 inflammation inflammation NN cord-010027-r0tl01kq 1627 15 . . . cord-010027-r0tl01kq 1628 1 However however RB cord-010027-r0tl01kq 1628 2 false false JJ cord-010027-r0tl01kq 1628 3 positive positive JJ cord-010027-r0tl01kq 1628 4 and and CC cord-010027-r0tl01kq 1628 5 negatives negative NNS cord-010027-r0tl01kq 1628 6 are be VBP cord-010027-r0tl01kq 1628 7 common common JJ cord-010027-r0tl01kq 1628 8 and and CC cord-010027-r0tl01kq 1628 9 can can MD cord-010027-r0tl01kq 1628 10 be be VB cord-010027-r0tl01kq 1628 11 attributable attributable JJ cord-010027-r0tl01kq 1628 12 to to IN cord-010027-r0tl01kq 1628 13 several several JJ cord-010027-r0tl01kq 1628 14 factors factor NNS cord-010027-r0tl01kq 1628 15 , , , cord-010027-r0tl01kq 1628 16 including include VBG cord-010027-r0tl01kq 1628 17 poor poor JJ cord-010027-r0tl01kq 1628 18 DNA dna NN cord-010027-r0tl01kq 1628 19 quality quality NN cord-010027-r0tl01kq 1628 20 . . . cord-010027-r0tl01kq 1629 1 Methods method NNS cord-010027-r0tl01kq 1629 2 : : : cord-010027-r0tl01kq 1630 1 206 206 CD cord-010027-r0tl01kq 1630 2 cases case NNS cord-010027-r0tl01kq 1630 3 reported report VBN cord-010027-r0tl01kq 1630 4 over over IN cord-010027-r0tl01kq 1630 5 a a DT cord-010027-r0tl01kq 1630 6 six six CD cord-010027-r0tl01kq 1630 7 month month NN cord-010027-r0tl01kq 1630 8 period period NN cord-010027-r0tl01kq 1630 9 ( ( -LRB- cord-010027-r0tl01kq 1630 10 Jun Jun NNP cord-010027-r0tl01kq 1630 11 - - HYPH cord-010027-r0tl01kq 1630 12 Nov Nov NNP cord-010027-r0tl01kq 1630 13 2014 2014 CD cord-010027-r0tl01kq 1630 14 ) ) -RRB- cord-010027-r0tl01kq 1630 15 were be VBD cord-010027-r0tl01kq 1630 16 retrospectively retrospectively RB cord-010027-r0tl01kq 1630 17 reviewed review VBN cord-010027-r0tl01kq 1630 18 , , , cord-010027-r0tl01kq 1630 19 62 62 CD cord-010027-r0tl01kq 1630 20 % % NN cord-010027-r0tl01kq 1630 21 of of IN cord-010027-r0tl01kq 1630 22 which which WDT cord-010027-r0tl01kq 1630 23 were be VBD cord-010027-r0tl01kq 1630 24 referral referral JJ cord-010027-r0tl01kq 1630 25 cases case NNS cord-010027-r0tl01kq 1630 26 . . . cord-010027-r0tl01kq 1631 1 We -PRON- PRP cord-010027-r0tl01kq 1631 2 investigated investigate VBD cord-010027-r0tl01kq 1631 3 various various JJ cord-010027-r0tl01kq 1631 4 aspects aspect NNS cord-010027-r0tl01kq 1631 5 of of IN cord-010027-r0tl01kq 1631 6 clonality clonality NN cord-010027-r0tl01kq 1631 7 studies study NNS cord-010027-r0tl01kq 1631 8 ; ; : cord-010027-r0tl01kq 1631 9 including include VBG cord-010027-r0tl01kq 1631 10 DNA dna NN cord-010027-r0tl01kq 1631 11 quality quality NN cord-010027-r0tl01kq 1631 12 , , , cord-010027-r0tl01kq 1631 13 fixation fixation NN cord-010027-r0tl01kq 1631 14 method method NN cord-010027-r0tl01kq 1631 15 , , , cord-010027-r0tl01kq 1631 16 clinical clinical JJ cord-010027-r0tl01kq 1631 17 information information NN cord-010027-r0tl01kq 1631 18 provided provide VBN cord-010027-r0tl01kq 1631 19 and and CC cord-010027-r0tl01kq 1631 20 correlation correlation NN cord-010027-r0tl01kq 1631 21 between between IN cord-010027-r0tl01kq 1631 22 the the DT cord-010027-r0tl01kq 1631 23 morphological morphological JJ cord-010027-r0tl01kq 1631 24 / / SYM cord-010027-r0tl01kq 1631 25 immunophenotypical immunophenotypical JJ cord-010027-r0tl01kq 1631 26 findings finding NNS cord-010027-r0tl01kq 1631 27 and and CC cord-010027-r0tl01kq 1631 28 clonality clonality NN cord-010027-r0tl01kq 1631 29 results result NNS cord-010027-r0tl01kq 1631 30 using use VBG cord-010027-r0tl01kq 1631 31 Euroclonality Euroclonality NNP cord-010027-r0tl01kq 1631 32 / / SYM cord-010027-r0tl01kq 1631 33 BIOMED-2 biomed-2 CC cord-010027-r0tl01kq 1631 34 primers primer NNS cord-010027-r0tl01kq 1631 35 ( ( -LRB- cord-010027-r0tl01kq 1631 36 IgH igh NN cord-010027-r0tl01kq 1631 37 , , , cord-010027-r0tl01kq 1631 38 IgK igk NN cord-010027-r0tl01kq 1631 39 , , , cord-010027-r0tl01kq 1631 40 TCR TCR NNP cord-010027-r0tl01kq 1631 41 - - HYPH cord-010027-r0tl01kq 1631 42 Β Β NNP cord-010027-r0tl01kq 1631 43 and and CC cord-010027-r0tl01kq 1631 44 gamma gamma NN cord-010027-r0tl01kq 1631 45 - - HYPH cord-010027-r0tl01kq 1631 46 delta delta NN cord-010027-r0tl01kq 1631 47 ) ) -RRB- cord-010027-r0tl01kq 1631 48 . . . cord-010027-r0tl01kq 1632 1 Results result NNS cord-010027-r0tl01kq 1632 2 : : : cord-010027-r0tl01kq 1632 3 166 166 CD cord-010027-r0tl01kq 1632 4 ( ( -LRB- cord-010027-r0tl01kq 1632 5 81 81 CD cord-010027-r0tl01kq 1632 6 % % NN cord-010027-r0tl01kq 1632 7 ) ) -RRB- cord-010027-r0tl01kq 1632 8 had have VBD cord-010027-r0tl01kq 1632 9 adequate adequate JJ cord-010027-r0tl01kq 1632 10 DNA dna NN cord-010027-r0tl01kq 1632 11 quality quality NN cord-010027-r0tl01kq 1632 12 , , , cord-010027-r0tl01kq 1632 13 29 29 CD cord-010027-r0tl01kq 1632 14 ( ( -LRB- cord-010027-r0tl01kq 1632 15 14 14 CD cord-010027-r0tl01kq 1632 16 % % NN cord-010027-r0tl01kq 1632 17 ) ) -RRB- cord-010027-r0tl01kq 1633 1 poor poor JJ cord-010027-r0tl01kq 1633 2 DNA DNA NNP cord-010027-r0tl01kq 1633 3 and and CC cord-010027-r0tl01kq 1633 4 11 11 CD cord-010027-r0tl01kq 1633 5 ( ( -LRB- cord-010027-r0tl01kq 1633 6 5 5 CD cord-010027-r0tl01kq 1633 7 % % NN cord-010027-r0tl01kq 1633 8 ) ) -RRB- cord-010027-r0tl01kq 1633 9 had have VBD cord-010027-r0tl01kq 1633 10 inadequate inadequate JJ cord-010027-r0tl01kq 1633 11 DNA dna NN cord-010027-r0tl01kq 1633 12 quality quality NN cord-010027-r0tl01kq 1633 13 . . . cord-010027-r0tl01kq 1634 1 External external JJ cord-010027-r0tl01kq 1634 2 cases case NNS cord-010027-r0tl01kq 1634 3 had have VBD cord-010027-r0tl01kq 1634 4 better well JJR cord-010027-r0tl01kq 1634 5 DNA dna NN cord-010027-r0tl01kq 1634 6 quality quality NN cord-010027-r0tl01kq 1634 7 in in IN cord-010027-r0tl01kq 1634 8 the the DT cord-010027-r0tl01kq 1634 9 majority majority NN cord-010027-r0tl01kq 1634 10 of of IN cord-010027-r0tl01kq 1634 11 cases case NNS cord-010027-r0tl01kq 1634 12 . . . cord-010027-r0tl01kq 1635 1 Clinical clinical JJ cord-010027-r0tl01kq 1635 2 information information NN cord-010027-r0tl01kq 1635 3 was be VBD cord-010027-r0tl01kq 1635 4 provided provide VBN cord-010027-r0tl01kq 1635 5 in in IN cord-010027-r0tl01kq 1635 6 75 75 CD cord-010027-r0tl01kq 1635 7 % % NN cord-010027-r0tl01kq 1635 8 of of IN cord-010027-r0tl01kq 1635 9 local local JJ cord-010027-r0tl01kq 1635 10 cases case NNS cord-010027-r0tl01kq 1635 11 and and CC cord-010027-r0tl01kq 1635 12 53 53 CD cord-010027-r0tl01kq 1635 13 % % NN cord-010027-r0tl01kq 1635 14 of of IN cord-010027-r0tl01kq 1635 15 external external JJ cord-010027-r0tl01kq 1635 16 cases case NNS cord-010027-r0tl01kq 1635 17 . . . cord-010027-r0tl01kq 1636 1 In in IN cord-010027-r0tl01kq 1636 2 56 56 CD cord-010027-r0tl01kq 1636 3 % % NN cord-010027-r0tl01kq 1636 4 of of IN cord-010027-r0tl01kq 1636 5 cases case NNS cord-010027-r0tl01kq 1636 6 clonality clonality NN cord-010027-r0tl01kq 1636 7 results result NNS cord-010027-r0tl01kq 1636 8 supported support VBD cord-010027-r0tl01kq 1636 9 the the DT cord-010027-r0tl01kq 1636 10 initial initial JJ cord-010027-r0tl01kq 1636 11 histological histological JJ cord-010027-r0tl01kq 1636 12 report report NN cord-010027-r0tl01kq 1636 13 . . . cord-010027-r0tl01kq 1637 1 9 9 CD cord-010027-r0tl01kq 1637 2 cases case NNS cord-010027-r0tl01kq 1637 3 showed show VBD cord-010027-r0tl01kq 1637 4 clonal clonal JJ cord-010027-r0tl01kq 1637 5 expansion expansion NN cord-010027-r0tl01kq 1637 6 despite despite IN cord-010027-r0tl01kq 1637 7 a a DT cord-010027-r0tl01kq 1637 8 benign benign JJ cord-010027-r0tl01kq 1637 9 process process NN cord-010027-r0tl01kq 1637 10 on on IN cord-010027-r0tl01kq 1637 11 histology histology NN cord-010027-r0tl01kq 1637 12 . . . cord-010027-r0tl01kq 1638 1 21 21 CD cord-010027-r0tl01kq 1638 2 suspected suspect VBN cord-010027-r0tl01kq 1638 3 cases case NNS cord-010027-r0tl01kq 1638 4 lymphoma lymphoma NN cord-010027-r0tl01kq 1638 5 ( ( -LRB- cord-010027-r0tl01kq 1638 6 13 13 CD cord-010027-r0tl01kq 1638 7 B B NNP cord-010027-r0tl01kq 1638 8 - - HYPH cord-010027-r0tl01kq 1638 9 NHL NHL NNP cord-010027-r0tl01kq 1638 10 and and CC cord-010027-r0tl01kq 1638 11 8 8 CD cord-010027-r0tl01kq 1638 12 T T NNP cord-010027-r0tl01kq 1638 13 - - HYPH cord-010027-r0tl01kq 1638 14 NHL NHL NNP cord-010027-r0tl01kq 1638 15 ) ) -RRB- cord-010027-r0tl01kq 1638 16 showed show VBD cord-010027-r0tl01kq 1638 17 no no DT cord-010027-r0tl01kq 1638 18 clonality clonality NN cord-010027-r0tl01kq 1638 19 , , , cord-010027-r0tl01kq 1638 20 8 8 CD cord-010027-r0tl01kq 1638 21 of of IN cord-010027-r0tl01kq 1638 22 which which WDT cord-010027-r0tl01kq 1638 23 yielded yield VBD cord-010027-r0tl01kq 1638 24 poor poor JJ cord-010027-r0tl01kq 1638 25 DNA dna NN cord-010027-r0tl01kq 1638 26 quality quality NN cord-010027-r0tl01kq 1638 27 . . . cord-010027-r0tl01kq 1639 1 Skin skin NN cord-010027-r0tl01kq 1639 2 cases case NNS cord-010027-r0tl01kq 1639 3 although although IN cord-010027-r0tl01kq 1639 4 had have VBD cord-010027-r0tl01kq 1639 5 good good JJ cord-010027-r0tl01kq 1639 6 DNA dna NN cord-010027-r0tl01kq 1639 7 quality quality NN cord-010027-r0tl01kq 1639 8 , , , cord-010027-r0tl01kq 1639 9 usually usually RB cord-010027-r0tl01kq 1639 10 had have VBD cord-010027-r0tl01kq 1639 11 low low JJ cord-010027-r0tl01kq 1639 12 number number NN cord-010027-r0tl01kq 1639 13 of of IN cord-010027-r0tl01kq 1639 14 neoplastic neoplastic JJ cord-010027-r0tl01kq 1639 15 cells cell NNS cord-010027-r0tl01kq 1639 16 resulting result VBG cord-010027-r0tl01kq 1639 17 in in IN cord-010027-r0tl01kq 1639 18 poor poor JJ cord-010027-r0tl01kq 1639 19 PCR PCR NNP cord-010027-r0tl01kq 1639 20 products product NNS cord-010027-r0tl01kq 1639 21 . . . cord-010027-r0tl01kq 1640 1 Conclusions conclusion NNS cord-010027-r0tl01kq 1640 2 : : : cord-010027-r0tl01kq 1641 1 DNA dna NN cord-010027-r0tl01kq 1641 2 quality quality NN cord-010027-r0tl01kq 1641 3 is be VBZ cord-010027-r0tl01kq 1641 4 very very RB cord-010027-r0tl01kq 1641 5 variable variable JJ cord-010027-r0tl01kq 1641 6 and and CC cord-010027-r0tl01kq 1641 7 clinical clinical JJ cord-010027-r0tl01kq 1641 8 information information NN cord-010027-r0tl01kq 1641 9 is be VBZ cord-010027-r0tl01kq 1641 10 often often RB cord-010027-r0tl01kq 1641 11 not not RB cord-010027-r0tl01kq 1641 12 provided provide VBN cord-010027-r0tl01kq 1641 13 precluding preclude VBG cord-010027-r0tl01kq 1641 14 adequate adequate JJ cord-010027-r0tl01kq 1641 15 assessment assessment NN cord-010027-r0tl01kq 1641 16 of of IN cord-010027-r0tl01kq 1641 17 clonality clonality NN cord-010027-r0tl01kq 1641 18 findings finding NNS cord-010027-r0tl01kq 1641 19 . . . cord-010027-r0tl01kq 1642 1 DNA DNA NNP cord-010027-r0tl01kq 1642 2 was be VBD cord-010027-r0tl01kq 1642 3 worse bad JJR cord-010027-r0tl01kq 1642 4 locally locally RB cord-010027-r0tl01kq 1642 5 ( ( -LRB- cord-010027-r0tl01kq 1642 6 decalcified decalcify VBN cord-010027-r0tl01kq 1642 7 marrow marrow NN cord-010027-r0tl01kq 1642 8 trephines trephine NNS cord-010027-r0tl01kq 1642 9 using use VBG cord-010027-r0tl01kq 1642 10 formic formic JJ cord-010027-r0tl01kq 1642 11 acid acid NN cord-010027-r0tl01kq 1642 12 and and CC cord-010027-r0tl01kq 1642 13 Peloris Peloris NNP cord-010027-r0tl01kq 1642 14 system system NN cord-010027-r0tl01kq 1642 15 with with IN cord-010027-r0tl01kq 1642 16 high high JJ cord-010027-r0tl01kq 1642 17 temperatures temperature NNS cord-010027-r0tl01kq 1642 18 that that WDT cord-010027-r0tl01kq 1642 19 can can MD cord-010027-r0tl01kq 1642 20 cause cause VB cord-010027-r0tl01kq 1642 21 DNA dna NN cord-010027-r0tl01kq 1642 22 degradation degradation NN cord-010027-r0tl01kq 1642 23 ) ) -RRB- cord-010027-r0tl01kq 1642 24 . . . cord-010027-r0tl01kq 1643 1 Standardisation standardisation NN cord-010027-r0tl01kq 1643 2 of of IN cord-010027-r0tl01kq 1643 3 fixation fixation NN cord-010027-r0tl01kq 1643 4 methods method NNS cord-010027-r0tl01kq 1643 5 and and CC cord-010027-r0tl01kq 1643 6 interpretation interpretation NN cord-010027-r0tl01kq 1643 7 of of IN cord-010027-r0tl01kq 1643 8 peaks/ peaks/ CD cord-010027-r0tl01kq 1643 9 bands band NNS cord-010027-r0tl01kq 1643 10 in in IN cord-010027-r0tl01kq 1643 11 the the DT cord-010027-r0tl01kq 1643 12 clinical clinical JJ cord-010027-r0tl01kq 1643 13 context context NN cord-010027-r0tl01kq 1643 14 of of IN cord-010027-r0tl01kq 1643 15 the the DT cord-010027-r0tl01kq 1643 16 patient patient NN cord-010027-r0tl01kq 1643 17 is be VBZ cord-010027-r0tl01kq 1643 18 essential essential JJ cord-010027-r0tl01kq 1643 19 for for IN cord-010027-r0tl01kq 1643 20 clonality clonality NN cord-010027-r0tl01kq 1643 21 to to TO cord-010027-r0tl01kq 1643 22 be be VB cord-010027-r0tl01kq 1643 23 informative informative JJ cord-010027-r0tl01kq 1643 24 . . . cord-010027-r0tl01kq 1644 1 Kikuchi Kikuchi NNP cord-010027-r0tl01kq 1644 2 - - HYPH cord-010027-r0tl01kq 1644 3 Fujimoto Fujimoto NNP cord-010027-r0tl01kq 1644 4 Disease Disease NNP cord-010027-r0tl01kq 1644 5 : : : cord-010027-r0tl01kq 1645 1 A a DT cord-010027-r0tl01kq 1645 2 Novel Novel NNP cord-010027-r0tl01kq 1645 3 Diagnosis diagnosis NN cord-010027-r0tl01kq 1645 4 by by IN cord-010027-r0tl01kq 1645 5 Transbronchial Transbronchial NNP cord-010027-r0tl01kq 1645 6 Biopsy Biopsy NNP cord-010027-r0tl01kq 1645 7 of of IN cord-010027-r0tl01kq 1645 8 Mediastinal Mediastinal NNP cord-010027-r0tl01kq 1645 9 Lymphadenopathy Lymphadenopathy NNP cord-010027-r0tl01kq 1645 10 P P NNP cord-010027-r0tl01kq 1645 11 PM pm NN cord-010027-r0tl01kq 1645 12 Ellery Ellery NNP cord-010027-r0tl01kq 1645 13 ; ; : cord-010027-r0tl01kq 1645 14 N N NNP cord-010027-r0tl01kq 1645 15 Archard Archard NNP cord-010027-r0tl01kq 1645 16 ; ; : cord-010027-r0tl01kq 1645 17 A a DT cord-010027-r0tl01kq 1645 18 Ramsay Ramsay NNP cord-010027-r0tl01kq 1645 19 UCL UCL NNP cord-010027-r0tl01kq 1645 20 Hospitals Hospitals NNPS cord-010027-r0tl01kq 1645 21 NHS NHS NNP cord-010027-r0tl01kq 1645 22 Foundation Foundation NNP cord-010027-r0tl01kq 1645 23 Trust Trust NNP cord-010027-r0tl01kq 1645 24 , , , cord-010027-r0tl01kq 1645 25 London London NNP cord-010027-r0tl01kq 1645 26 , , , cord-010027-r0tl01kq 1646 1 UK UK NNP cord-010027-r0tl01kq 1646 2 Objectives Objectives NNP cord-010027-r0tl01kq 1646 3 : : : cord-010027-r0tl01kq 1646 4 Kikuchi Kikuchi NNP cord-010027-r0tl01kq 1646 5 - - HYPH cord-010027-r0tl01kq 1646 6 Fujimoto Fujimoto NNP cord-010027-r0tl01kq 1646 7 disease disease NN cord-010027-r0tl01kq 1646 8 ( ( -LRB- cord-010027-r0tl01kq 1646 9 KFD KFD NNP cord-010027-r0tl01kq 1646 10 ) ) -RRB- cord-010027-r0tl01kq 1646 11 is be VBZ cord-010027-r0tl01kq 1646 12 a a DT cord-010027-r0tl01kq 1646 13 rare rare JJ cord-010027-r0tl01kq 1646 14 , , , cord-010027-r0tl01kq 1646 15 self self NN cord-010027-r0tl01kq 1646 16 - - HYPH cord-010027-r0tl01kq 1646 17 limiting limit VBG cord-010027-r0tl01kq 1646 18 form form NN cord-010027-r0tl01kq 1646 19 of of IN cord-010027-r0tl01kq 1646 20 necrotising necrotise VBG cord-010027-r0tl01kq 1646 21 lymphadenitis lymphadenitis NNP cord-010027-r0tl01kq 1646 22 that that WDT cord-010027-r0tl01kq 1646 23 most most RBS cord-010027-r0tl01kq 1646 24 commonly commonly RB cord-010027-r0tl01kq 1646 25 affects affect VBZ cord-010027-r0tl01kq 1646 26 young young JJ cord-010027-r0tl01kq 1646 27 Asian asian JJ cord-010027-r0tl01kq 1646 28 women woman NNS cord-010027-r0tl01kq 1646 29 , , , cord-010027-r0tl01kq 1646 30 and and CC cord-010027-r0tl01kq 1646 31 classically classically RB cord-010027-r0tl01kq 1646 32 presents present VBZ cord-010027-r0tl01kq 1646 33 with with IN cord-010027-r0tl01kq 1646 34 fever fever NN cord-010027-r0tl01kq 1646 35 , , , cord-010027-r0tl01kq 1646 36 malaise malaise NN cord-010027-r0tl01kq 1646 37 and and CC cord-010027-r0tl01kq 1646 38 lymphadenopathy lymphadenopathy JJ cord-010027-r0tl01kq 1646 39 . . . cord-010027-r0tl01kq 1647 1 The the DT cord-010027-r0tl01kq 1647 2 cervical cervical JJ cord-010027-r0tl01kq 1647 3 lymph lymph NN cord-010027-r0tl01kq 1647 4 nodes node NNS cord-010027-r0tl01kq 1647 5 are be VBP cord-010027-r0tl01kq 1647 6 involved involve VBN cord-010027-r0tl01kq 1647 7 in in IN cord-010027-r0tl01kq 1647 8 around around IN cord-010027-r0tl01kq 1647 9 85 85 CD cord-010027-r0tl01kq 1647 10 % % NN cord-010027-r0tl01kq 1647 11 of of IN cord-010027-r0tl01kq 1647 12 cases case NNS cord-010027-r0tl01kq 1647 13 , , , cord-010027-r0tl01kq 1647 14 with with IN cord-010027-r0tl01kq 1647 15 other other JJ cord-010027-r0tl01kq 1647 16 sites site NNS cord-010027-r0tl01kq 1647 17 rarely rarely RB cord-010027-r0tl01kq 1647 18 involved involve VBN cord-010027-r0tl01kq 1647 19 . . . cord-010027-r0tl01kq 1648 1 We -PRON- PRP cord-010027-r0tl01kq 1648 2 report report VBP cord-010027-r0tl01kq 1648 3 an an DT cord-010027-r0tl01kq 1648 4 unusual unusual JJ cord-010027-r0tl01kq 1648 5 case case NN cord-010027-r0tl01kq 1648 6 in in IN cord-010027-r0tl01kq 1648 7 which which WDT cord-010027-r0tl01kq 1648 8 an an DT cord-010027-r0tl01kq 1648 9 unexpected unexpected JJ cord-010027-r0tl01kq 1648 10 diagnosis diagnosis NN cord-010027-r0tl01kq 1648 11 of of IN cord-010027-r0tl01kq 1648 12 KFD KFD NNP cord-010027-r0tl01kq 1648 13 was be VBD cord-010027-r0tl01kq 1648 14 made make VBN cord-010027-r0tl01kq 1648 15 via via IN cord-010027-r0tl01kq 1648 16 transbronchial transbronchial JJ cord-010027-r0tl01kq 1648 17 biopsy biopsy NN cord-010027-r0tl01kq 1648 18 of of IN cord-010027-r0tl01kq 1648 19 mediastinal mediastinal JJ cord-010027-r0tl01kq 1648 20 lymph lymph NN cord-010027-r0tl01kq 1648 21 nodes node NNS cord-010027-r0tl01kq 1648 22 . . . cord-010027-r0tl01kq 1649 1 A a DT cord-010027-r0tl01kq 1649 2 15 15 CD cord-010027-r0tl01kq 1649 3 year year NN cord-010027-r0tl01kq 1649 4 old old JJ cord-010027-r0tl01kq 1649 5 boy boy NN cord-010027-r0tl01kq 1649 6 of of IN cord-010027-r0tl01kq 1649 7 Pakistani pakistani JJ cord-010027-r0tl01kq 1649 8 origin origin NN cord-010027-r0tl01kq 1649 9 presented present VBN cord-010027-r0tl01kq 1649 10 with with IN cord-010027-r0tl01kq 1649 11 a a DT cord-010027-r0tl01kq 1649 12 4 4 CD cord-010027-r0tl01kq 1649 13 month month NN cord-010027-r0tl01kq 1649 14 history history NN cord-010027-r0tl01kq 1649 15 of of IN cord-010027-r0tl01kq 1649 16 lethargy lethargy NN cord-010027-r0tl01kq 1649 17 , , , cord-010027-r0tl01kq 1649 18 neck neck NN cord-010027-r0tl01kq 1649 19 stiffness stiffness NN cord-010027-r0tl01kq 1649 20 and and CC cord-010027-r0tl01kq 1649 21 weight weight NN cord-010027-r0tl01kq 1649 22 loss loss NN cord-010027-r0tl01kq 1649 23 , , , cord-010027-r0tl01kq 1649 24 with with IN cord-010027-r0tl01kq 1649 25 fever fever NN cord-010027-r0tl01kq 1649 26 ( ( -LRB- cord-010027-r0tl01kq 1649 27 up up IN cord-010027-r0tl01kq 1649 28 to to TO cord-010027-r0tl01kq 1649 29 40 40 CD cord-010027-r0tl01kq 1649 30 ° ° NN cord-010027-r0tl01kq 1649 31 C c NN cord-010027-r0tl01kq 1649 32 ) ) -RRB- cord-010027-r0tl01kq 1649 33 and and CC cord-010027-r0tl01kq 1649 34 night night NN cord-010027-r0tl01kq 1649 35 sweats sweat NNS cord-010027-r0tl01kq 1649 36 . . . cord-010027-r0tl01kq 1650 1 Chest chest NN cord-010027-r0tl01kq 1650 2 X x NN cord-010027-r0tl01kq 1650 3 - - NN cord-010027-r0tl01kq 1650 4 ray ray NN cord-010027-r0tl01kq 1650 5 , , , cord-010027-r0tl01kq 1650 6 Mantoux Mantoux NNP cord-010027-r0tl01kq 1650 7 test test NN cord-010027-r0tl01kq 1650 8 , , , cord-010027-r0tl01kq 1650 9 blood blood NN cord-010027-r0tl01kq 1650 10 cultures culture NNS cord-010027-r0tl01kq 1650 11 and and CC cord-010027-r0tl01kq 1650 12 viral viral JJ cord-010027-r0tl01kq 1650 13 PCR PCR NNP cord-010027-r0tl01kq 1650 14 were be VBD cord-010027-r0tl01kq 1650 15 negative negative JJ cord-010027-r0tl01kq 1650 16 . . . cord-010027-r0tl01kq 1651 1 Lumbar lumbar JJ cord-010027-r0tl01kq 1651 2 puncture puncture NN cord-010027-r0tl01kq 1651 3 was be VBD cord-010027-r0tl01kq 1651 4 normal normal JJ cord-010027-r0tl01kq 1651 5 , , , cord-010027-r0tl01kq 1651 6 with with IN cord-010027-r0tl01kq 1651 7 no no DT cord-010027-r0tl01kq 1651 8 acid acid NN cord-010027-r0tl01kq 1651 9 fast fast RB cord-010027-r0tl01kq 1651 10 - - HYPH cord-010027-r0tl01kq 1651 11 bacilli bacilli JJ cord-010027-r0tl01kq 1651 12 . . . cord-010027-r0tl01kq 1652 1 CT CT NNP cord-010027-r0tl01kq 1652 2 showed show VBD cord-010027-r0tl01kq 1652 3 enlargement enlargement NN cord-010027-r0tl01kq 1652 4 of of IN cord-010027-r0tl01kq 1652 5 the the DT cord-010027-r0tl01kq 1652 6 deep deep JJ cord-010027-r0tl01kq 1652 7 cervical cervical JJ cord-010027-r0tl01kq 1652 8 lymph lymph NN cord-010027-r0tl01kq 1652 9 nodes node NNS cord-010027-r0tl01kq 1652 10 ( ( -LRB- cord-010027-r0tl01kq 1652 11 PETpositive PETpositive NNP cord-010027-r0tl01kq 1652 12 on on IN cord-010027-r0tl01kq 1652 13 further further JJ cord-010027-r0tl01kq 1652 14 imaging imaging NN cord-010027-r0tl01kq 1652 15 ) ) -RRB- cord-010027-r0tl01kq 1652 16 , , , cord-010027-r0tl01kq 1652 17 and and CC cord-010027-r0tl01kq 1652 18 mediastinal mediastinal JJ cord-010027-r0tl01kq 1652 19 lymphadenopathy lymphadenopathy NN cord-010027-r0tl01kq 1652 20 . . . cord-010027-r0tl01kq 1653 1 He -PRON- PRP cord-010027-r0tl01kq 1653 2 was be VBD cord-010027-r0tl01kq 1653 3 transferred transfer VBN cord-010027-r0tl01kq 1653 4 to to IN cord-010027-r0tl01kq 1653 5 our -PRON- PRP$ cord-010027-r0tl01kq 1653 6 hospital hospital NN cord-010027-r0tl01kq 1653 7 for for IN cord-010027-r0tl01kq 1653 8 further further JJ cord-010027-r0tl01kq 1653 9 management management NN cord-010027-r0tl01kq 1653 10 , , , cord-010027-r0tl01kq 1653 11 with with IN cord-010027-r0tl01kq 1653 12 a a DT cord-010027-r0tl01kq 1653 13 differential differential JJ cord-010027-r0tl01kq 1653 14 diagnosis diagnosis NN cord-010027-r0tl01kq 1653 15 of of IN cord-010027-r0tl01kq 1653 16 TB TB NNP cord-010027-r0tl01kq 1653 17 , , , cord-010027-r0tl01kq 1653 18 lymphoma lymphoma NN cord-010027-r0tl01kq 1653 19 , , , cord-010027-r0tl01kq 1653 20 rare rare JJ cord-010027-r0tl01kq 1653 21 infection infection NN cord-010027-r0tl01kq 1653 22 or or CC cord-010027-r0tl01kq 1653 23 autoimmune autoimmune JJ cord-010027-r0tl01kq 1653 24 disease disease NN cord-010027-r0tl01kq 1653 25 . . . cord-010027-r0tl01kq 1654 1 He -PRON- PRP cord-010027-r0tl01kq 1654 2 underwent undergo VBD cord-010027-r0tl01kq 1654 3 transbronchial transbronchial JJ cord-010027-r0tl01kq 1654 4 biopsy biopsy NN cord-010027-r0tl01kq 1654 5 of of IN cord-010027-r0tl01kq 1654 6 the the DT cord-010027-r0tl01kq 1654 7 mediastinal mediastinal JJ cord-010027-r0tl01kq 1654 8 lymph lymph NN cord-010027-r0tl01kq 1654 9 nodes node NNS cord-010027-r0tl01kq 1654 10 . . . cord-010027-r0tl01kq 1655 1 Results result NNS cord-010027-r0tl01kq 1655 2 : : : cord-010027-r0tl01kq 1656 1 His -PRON- PRP$ cord-010027-r0tl01kq 1656 2 biopsy biopsy NN cord-010027-r0tl01kq 1656 3 showed show VBD cord-010027-r0tl01kq 1656 4 blood blood NN cord-010027-r0tl01kq 1656 5 clot clot NN cord-010027-r0tl01kq 1656 6 and and CC cord-010027-r0tl01kq 1656 7 cores core NNS cord-010027-r0tl01kq 1656 8 of of IN cord-010027-r0tl01kq 1656 9 lymph lymph NN cord-010027-r0tl01kq 1656 10 node node NN cord-010027-r0tl01kq 1656 11 , , , cord-010027-r0tl01kq 1656 12 with with IN cord-010027-r0tl01kq 1656 13 focal focal JJ cord-010027-r0tl01kq 1656 14 collections collection NNS cord-010027-r0tl01kq 1656 15 of of IN cord-010027-r0tl01kq 1656 16 crescentic crescentic JJ cord-010027-r0tl01kq 1656 17 macrophages macrophage NNS cord-010027-r0tl01kq 1656 18 , , , cord-010027-r0tl01kq 1656 19 admixed admix VBN cord-010027-r0tl01kq 1656 20 lymphocytes lymphocyte NNS cord-010027-r0tl01kq 1656 21 and and CC cord-010027-r0tl01kq 1656 22 prominent prominent JJ cord-010027-r0tl01kq 1656 23 apoptotic apoptotic JJ cord-010027-r0tl01kq 1656 24 debris debris NN cord-010027-r0tl01kq 1656 25 . . . cord-010027-r0tl01kq 1657 1 Immunohistochemistry Immunohistochemistry NNP cord-010027-r0tl01kq 1657 2 demonstrated demonstrate VBD cord-010027-r0tl01kq 1657 3 a a DT cord-010027-r0tl01kq 1657 4 population population NN cord-010027-r0tl01kq 1657 5 of of IN cord-010027-r0tl01kq 1657 6 CD123-positive cd123-positive JJ cord-010027-r0tl01kq 1657 7 plasmacytoid plasmacytoid NNP cord-010027-r0tl01kq 1657 8 dendritic dendritic JJ cord-010027-r0tl01kq 1657 9 cells cell NNS cord-010027-r0tl01kq 1657 10 and and CC cord-010027-r0tl01kq 1657 11 granular granular JJ cord-010027-r0tl01kq 1657 12 MPO MPO NNP cord-010027-r0tl01kq 1657 13 positivity positivity NN cord-010027-r0tl01kq 1657 14 in in IN cord-010027-r0tl01kq 1657 15 macrophage macrophage NN cord-010027-r0tl01kq 1657 16 cytoplasm cytoplasm NN cord-010027-r0tl01kq 1657 17 . . . cord-010027-r0tl01kq 1658 1 The the DT cord-010027-r0tl01kq 1658 2 background background NN cord-010027-r0tl01kq 1658 3 lymphocytes lymphocyte NNS cord-010027-r0tl01kq 1658 4 were be VBD cord-010027-r0tl01kq 1658 5 mainly mainly RB cord-010027-r0tl01kq 1658 6 CD8-positive CD8-positive NNP cord-010027-r0tl01kq 1658 7 T t NN cord-010027-r0tl01kq 1658 8 - - HYPH cord-010027-r0tl01kq 1658 9 cells cell NNS cord-010027-r0tl01kq 1658 10 . . . cord-010027-r0tl01kq 1659 1 The the DT cord-010027-r0tl01kq 1659 2 features feature NNS cord-010027-r0tl01kq 1659 3 were be VBD cord-010027-r0tl01kq 1659 4 those those DT cord-010027-r0tl01kq 1659 5 of of IN cord-010027-r0tl01kq 1659 6 KFD KFD NNP cord-010027-r0tl01kq 1659 7 . . . cord-010027-r0tl01kq 1660 1 Conclusion conclusion NN cord-010027-r0tl01kq 1660 2 : : : cord-010027-r0tl01kq 1661 1 Involvement involvement NN cord-010027-r0tl01kq 1661 2 of of IN cord-010027-r0tl01kq 1661 3 deep deep JJ cord-010027-r0tl01kq 1661 4 lymph lymph NN cord-010027-r0tl01kq 1661 5 nodes node NNS cord-010027-r0tl01kq 1661 6 is be VBZ cord-010027-r0tl01kq 1661 7 unusual unusual JJ cord-010027-r0tl01kq 1661 8 in in IN cord-010027-r0tl01kq 1661 9 KFD KFD NNP cord-010027-r0tl01kq 1661 10 , , , cord-010027-r0tl01kq 1661 11 and and CC cord-010027-r0tl01kq 1661 12 to to IN cord-010027-r0tl01kq 1661 13 our -PRON- PRP$ cord-010027-r0tl01kq 1661 14 knowledge knowledge NN cord-010027-r0tl01kq 1661 15 , , , cord-010027-r0tl01kq 1661 16 this this DT cord-010027-r0tl01kq 1661 17 is be VBZ cord-010027-r0tl01kq 1661 18 the the DT cord-010027-r0tl01kq 1661 19 first first JJ cord-010027-r0tl01kq 1661 20 case case NN cord-010027-r0tl01kq 1661 21 diagnosed diagnose VBN cord-010027-r0tl01kq 1661 22 via via IN cord-010027-r0tl01kq 1661 23 transbronchial transbronchial JJ cord-010027-r0tl01kq 1661 24 biopsy biopsy NN cord-010027-r0tl01kq 1661 25 . . . cord-010027-r0tl01kq 1662 1 Such such JJ cord-010027-r0tl01kq 1662 2 biopsies biopsy NNS cord-010027-r0tl01kq 1662 3 often often RB cord-010027-r0tl01kq 1662 4 produce produce VBP cord-010027-r0tl01kq 1662 5 scanty scanty JJ cord-010027-r0tl01kq 1662 6 diagnostic diagnostic JJ cord-010027-r0tl01kq 1662 7 material material NN cord-010027-r0tl01kq 1662 8 , , , cord-010027-r0tl01kq 1662 9 and and CC cord-010027-r0tl01kq 1662 10 here here RB cord-010027-r0tl01kq 1662 11 the the DT cord-010027-r0tl01kq 1662 12 detection detection NN cord-010027-r0tl01kq 1662 13 of of IN cord-010027-r0tl01kq 1662 14 the the DT cord-010027-r0tl01kq 1662 15 characteristic characteristic JJ cord-010027-r0tl01kq 1662 16 immunoprofile immunoprofile NN cord-010027-r0tl01kq 1662 17 of of IN cord-010027-r0tl01kq 1662 18 KFD KFD NNP cord-010027-r0tl01kq 1662 19 helped help VBD cord-010027-r0tl01kq 1662 20 confirm confirm VB cord-010027-r0tl01kq 1662 21 the the DT cord-010027-r0tl01kq 1662 22 diagnosis diagnosis NN cord-010027-r0tl01kq 1662 23 . . . cord-010027-r0tl01kq 1663 1 This this DT cord-010027-r0tl01kq 1663 2 case case NN cord-010027-r0tl01kq 1663 3 highlights highlight VBZ cord-010027-r0tl01kq 1663 4 that that IN cord-010027-r0tl01kq 1663 5 KFD KFD NNP cord-010027-r0tl01kq 1663 6 should should MD cord-010027-r0tl01kq 1663 7 be be VB cord-010027-r0tl01kq 1663 8 considered consider VBN cord-010027-r0tl01kq 1663 9 at at IN cord-010027-r0tl01kq 1663 10 sites site NNS cord-010027-r0tl01kq 1663 11 other other JJ cord-010027-r0tl01kq 1663 12 than than IN cord-010027-r0tl01kq 1663 13 the the DT cord-010027-r0tl01kq 1663 14 cervical cervical JJ cord-010027-r0tl01kq 1663 15 lymph lymph NN cord-010027-r0tl01kq 1663 16 nodes node NNS cord-010027-r0tl01kq 1663 17 , , , cord-010027-r0tl01kq 1663 18 and and CC cord-010027-r0tl01kq 1663 19 demonstrates demonstrate VBZ cord-010027-r0tl01kq 1663 20 the the DT cord-010027-r0tl01kq 1663 21 value value NN cord-010027-r0tl01kq 1663 22 of of IN cord-010027-r0tl01kq 1663 23 immunohistochemistry immunohistochemistry NN cord-010027-r0tl01kq 1663 24 in in IN cord-010027-r0tl01kq 1663 25 reaching reach VBG cord-010027-r0tl01kq 1663 26 a a DT cord-010027-r0tl01kq 1663 27 definitive definitive JJ cord-010027-r0tl01kq 1663 28 diagnosis diagnosis NN cord-010027-r0tl01kq 1663 29 . . . cord-010027-r0tl01kq 1664 1 We -PRON- PRP cord-010027-r0tl01kq 1664 2 describe describe VBP cord-010027-r0tl01kq 1664 3 a a DT cord-010027-r0tl01kq 1664 4 benign benign JJ cord-010027-r0tl01kq 1664 5 intravascular intravascular JJ cord-010027-r0tl01kq 1664 6 proliferation proliferation NN cord-010027-r0tl01kq 1664 7 of of IN cord-010027-r0tl01kq 1664 8 atypical atypical JJ cord-010027-r0tl01kq 1664 9 polytypic polytypic JJ cord-010027-r0tl01kq 1664 10 CD30 CD30 NNP cord-010027-r0tl01kq 1664 11 positive positive JJ cord-010027-r0tl01kq 1664 12 T t NN cord-010027-r0tl01kq 1664 13 cells cell NNS cord-010027-r0tl01kq 1664 14 , , , cord-010027-r0tl01kq 1664 15 co co VBD cord-010027-r0tl01kq 1664 16 - - JJ cord-010027-r0tl01kq 1664 17 expressing express VBG cord-010027-r0tl01kq 1664 18 follicular follicular JJ cord-010027-r0tl01kq 1664 19 T T NNP cord-010027-r0tl01kq 1664 20 helper helper NN cord-010027-r0tl01kq 1664 21 cell cell NN cord-010027-r0tl01kq 1664 22 lineage lineage NN cord-010027-r0tl01kq 1664 23 markers marker NNS cord-010027-r0tl01kq 1664 24 coincidental coincidental JJ cord-010027-r0tl01kq 1664 25 to to IN cord-010027-r0tl01kq 1664 26 local local JJ cord-010027-r0tl01kq 1664 27 sepsis sepsis NN cord-010027-r0tl01kq 1664 28 of of IN cord-010027-r0tl01kq 1664 29 the the DT cord-010027-r0tl01kq 1664 30 buttock buttock NN cord-010027-r0tl01kq 1664 31 . . . cord-010027-r0tl01kq 1665 1 A a DT cord-010027-r0tl01kq 1665 2 43 43 CD cord-010027-r0tl01kq 1665 3 year year NN cord-010027-r0tl01kq 1665 4 old old JJ cord-010027-r0tl01kq 1665 5 female female NN cord-010027-r0tl01kq 1665 6 presented present VBN cord-010027-r0tl01kq 1665 7 with with IN cord-010027-r0tl01kq 1665 8 a a DT cord-010027-r0tl01kq 1665 9 5x5 5x5 CD cord-010027-r0tl01kq 1665 10 cm cm NN cord-010027-r0tl01kq 1665 11 buttock buttock NN cord-010027-r0tl01kq 1665 12 abscess abscess NN cord-010027-r0tl01kq 1665 13 at at IN cord-010027-r0tl01kq 1665 14 the the DT cord-010027-r0tl01kq 1665 15 site site NN cord-010027-r0tl01kq 1665 16 of of IN cord-010027-r0tl01kq 1665 17 a a DT cord-010027-r0tl01kq 1665 18 longstanding longstanding JJ cord-010027-r0tl01kq 1665 19 palpable palpable JJ cord-010027-r0tl01kq 1665 20 lump lump NN cord-010027-r0tl01kq 1665 21 . . . cord-010027-r0tl01kq 1666 1 Peripheral peripheral JJ cord-010027-r0tl01kq 1666 2 blood blood NN cord-010027-r0tl01kq 1666 3 showed show VBD cord-010027-r0tl01kq 1666 4 only only RB cord-010027-r0tl01kq 1666 5 a a DT cord-010027-r0tl01kq 1666 6 neutrophilic neutrophilic JJ cord-010027-r0tl01kq 1666 7 leucocytosis leucocytosis NN cord-010027-r0tl01kq 1666 8 . . . cord-010027-r0tl01kq 1667 1 Immunohistological Immunohistological NNP cord-010027-r0tl01kq 1667 2 examination examination NN cord-010027-r0tl01kq 1667 3 showed show VBD cord-010027-r0tl01kq 1667 4 large large JJ cord-010027-r0tl01kq 1667 5 aggregates aggregate NNS cord-010027-r0tl01kq 1667 6 of of IN cord-010027-r0tl01kq 1667 7 atypical atypical JJ cord-010027-r0tl01kq 1667 8 CD30 CD30 NNP cord-010027-r0tl01kq 1667 9 positive positive JJ cord-010027-r0tl01kq 1667 10 , , , cord-010027-r0tl01kq 1667 11 ALK ALK NNP cord-010027-r0tl01kq 1667 12 negative negative JJ cord-010027-r0tl01kq 1667 13 lymphoid lymphoid JJ cord-010027-r0tl01kq 1667 14 cells cell NNS cord-010027-r0tl01kq 1667 15 expressing express VBG cord-010027-r0tl01kq 1667 16 a a DT cord-010027-r0tl01kq 1667 17 pan pan NN cord-010027-r0tl01kq 1667 18 T T NNP cord-010027-r0tl01kq 1667 19 helper helper NN cord-010027-r0tl01kq 1667 20 phenotype phenotype NN cord-010027-r0tl01kq 1667 21 with with IN cord-010027-r0tl01kq 1667 22 CD7 CD7 NNP cord-010027-r0tl01kq 1667 23 partially partially RB cord-010027-r0tl01kq 1667 24 downregulated downregulate VBD cord-010027-r0tl01kq 1667 25 . . . cord-010027-r0tl01kq 1668 1 Podoplanin Podoplanin NNP cord-010027-r0tl01kq 1668 2 proved prove VBD cord-010027-r0tl01kq 1668 3 that that IN cord-010027-r0tl01kq 1668 4 the the DT cord-010027-r0tl01kq 1668 5 atypical atypical JJ cord-010027-r0tl01kq 1668 6 T t NN cord-010027-r0tl01kq 1668 7 cells cell NNS cord-010027-r0tl01kq 1668 8 were be VBD cord-010027-r0tl01kq 1668 9 primarily primarily RB cord-010027-r0tl01kq 1668 10 , , , cord-010027-r0tl01kq 1668 11 but but CC cord-010027-r0tl01kq 1668 12 not not RB cord-010027-r0tl01kq 1668 13 exclusively exclusively RB cord-010027-r0tl01kq 1668 14 , , , cord-010027-r0tl01kq 1668 15 localised localise VBN cord-010027-r0tl01kq 1668 16 within within IN cord-010027-r0tl01kq 1668 17 lymphatic lymphatic JJ cord-010027-r0tl01kq 1668 18 channels channel NNS cord-010027-r0tl01kq 1668 19 . . . cord-010027-r0tl01kq 1669 1 A a DT cord-010027-r0tl01kq 1669 2 T t NN cord-010027-r0tl01kq 1669 3 cell cell NN cord-010027-r0tl01kq 1669 4 receptor receptor NN cord-010027-r0tl01kq 1669 5 clone clone NN cord-010027-r0tl01kq 1669 6 was be VBD cord-010027-r0tl01kq 1669 7 not not RB cord-010027-r0tl01kq 1669 8 detected detect VBN cord-010027-r0tl01kq 1669 9 using use VBG cord-010027-r0tl01kq 1669 10 PCR PCR NNP cord-010027-r0tl01kq 1669 11 . . . cord-010027-r0tl01kq 1670 1 To to TO cord-010027-r0tl01kq 1670 2 find find VB cord-010027-r0tl01kq 1670 3 intravascular intravascular JJ cord-010027-r0tl01kq 1670 4 concentrations concentration NNS cord-010027-r0tl01kq 1670 5 of of IN cord-010027-r0tl01kq 1670 6 atypical atypical JJ cord-010027-r0tl01kq 1670 7 lymphoid lymphoid JJ cord-010027-r0tl01kq 1670 8 cells cell NNS cord-010027-r0tl01kq 1670 9 is be VBZ cord-010027-r0tl01kq 1670 10 uncommon uncommon JJ cord-010027-r0tl01kq 1670 11 in in IN cord-010027-r0tl01kq 1670 12 skin skin NN cord-010027-r0tl01kq 1670 13 biopsies biopsy NNS cord-010027-r0tl01kq 1670 14 and and CC cord-010027-r0tl01kq 1670 15 raises raise VBZ cord-010027-r0tl01kq 1670 16 the the DT cord-010027-r0tl01kq 1670 17 possibility possibility NN cord-010027-r0tl01kq 1670 18 of of IN cord-010027-r0tl01kq 1670 19 leukaemia leukaemia NN cord-010027-r0tl01kq 1670 20 or or CC cord-010027-r0tl01kq 1670 21 intravascular intravascular JJ cord-010027-r0tl01kq 1670 22 lymphoma lymphoma NN cord-010027-r0tl01kq 1670 23 . . . cord-010027-r0tl01kq 1671 1 Intravascular Intravascular NNP cord-010027-r0tl01kq 1671 2 lymphoma lymphoma NN cord-010027-r0tl01kq 1671 3 is be VBZ cord-010027-r0tl01kq 1671 4 a a DT cord-010027-r0tl01kq 1671 5 rare rare JJ cord-010027-r0tl01kq 1671 6 variant variant NN cord-010027-r0tl01kq 1671 7 of of IN cord-010027-r0tl01kq 1671 8 non non JJ cord-010027-r0tl01kq 1671 9 Hodgkin Hodgkin NNP cord-010027-r0tl01kq 1671 10 Lymphoma Lymphoma NNP cord-010027-r0tl01kq 1671 11 with with IN cord-010027-r0tl01kq 1671 12 a a DT cord-010027-r0tl01kq 1671 13 minority minority NN cord-010027-r0tl01kq 1671 14 possessing possess VBG cord-010027-r0tl01kq 1671 15 T T NNP cord-010027-r0tl01kq 1671 16 or or CC cord-010027-r0tl01kq 1671 17 NK NK NNP cord-010027-r0tl01kq 1671 18 cell cell NN cord-010027-r0tl01kq 1671 19 lineage lineage NN cord-010027-r0tl01kq 1671 20 but but CC cord-010027-r0tl01kq 1671 21 frequently frequently RB cord-010027-r0tl01kq 1671 22 involving involve VBG cord-010027-r0tl01kq 1671 23 skin skin NN cord-010027-r0tl01kq 1671 24 . . . cord-010027-r0tl01kq 1672 1 CD30 CD30 NNP cord-010027-r0tl01kq 1672 2 is be VBZ cord-010027-r0tl01kq 1672 3 a a DT cord-010027-r0tl01kq 1672 4 transmembrane transmembrane NN cord-010027-r0tl01kq 1672 5 glycoprotein glycoprotein NN cord-010027-r0tl01kq 1672 6 and and CC cord-010027-r0tl01kq 1672 7 a a DT cord-010027-r0tl01kq 1672 8 member member NN cord-010027-r0tl01kq 1672 9 of of IN cord-010027-r0tl01kq 1672 10 the the DT cord-010027-r0tl01kq 1672 11 TNF TNF NNP cord-010027-r0tl01kq 1672 12 superfamily superfamily NN cord-010027-r0tl01kq 1672 13 involved involve VBN cord-010027-r0tl01kq 1672 14 in in IN cord-010027-r0tl01kq 1672 15 regulating regulate VBG cord-010027-r0tl01kq 1672 16 proliferation proliferation NN cord-010027-r0tl01kq 1672 17 . . . cord-010027-r0tl01kq 1673 1 It -PRON- PRP cord-010027-r0tl01kq 1673 2 is be VBZ cord-010027-r0tl01kq 1673 3 considered consider VBN cord-010027-r0tl01kq 1673 4 a a DT cord-010027-r0tl01kq 1673 5 reliable reliable JJ cord-010027-r0tl01kq 1673 6 marker marker NN cord-010027-r0tl01kq 1673 7 of of IN cord-010027-r0tl01kq 1673 8 lymphoma lymphoma NN cord-010027-r0tl01kq 1673 9 . . . cord-010027-r0tl01kq 1674 1 Primary primary JJ cord-010027-r0tl01kq 1674 2 cutaneous cutaneous JJ cord-010027-r0tl01kq 1674 3 CD30 CD30 NNP cord-010027-r0tl01kq 1674 4 positive positive JJ cord-010027-r0tl01kq 1674 5 TLPDs tlpd NNS cord-010027-r0tl01kq 1674 6 encompass encompass VBP cord-010027-r0tl01kq 1674 7 a a DT cord-010027-r0tl01kq 1674 8 spectrum spectrum NN cord-010027-r0tl01kq 1674 9 of of IN cord-010027-r0tl01kq 1674 10 biological biological JJ cord-010027-r0tl01kq 1674 11 aggressiveness aggressiveness NN cord-010027-r0tl01kq 1674 12 and and CC cord-010027-r0tl01kq 1674 13 include include VBP cord-010027-r0tl01kq 1674 14 primary primary JJ cord-010027-r0tl01kq 1674 15 cutaneous cutaneous JJ cord-010027-r0tl01kq 1674 16 anaplastic anaplastic JJ cord-010027-r0tl01kq 1674 17 large large JJ cord-010027-r0tl01kq 1674 18 - - HYPH cord-010027-r0tl01kq 1674 19 cell cell NN cord-010027-r0tl01kq 1674 20 lymphoma lymphoma NN cord-010027-r0tl01kq 1674 21 and and CC cord-010027-r0tl01kq 1674 22 lymphomatoid lymphomatoid NNP cord-010027-r0tl01kq 1674 23 papulosis papulosis NNP cord-010027-r0tl01kq 1674 24 ( ( -LRB- cord-010027-r0tl01kq 1674 25 LyP lyp NN cord-010027-r0tl01kq 1674 26 ) ) -RRB- cord-010027-r0tl01kq 1674 27 . . . cord-010027-r0tl01kq 1675 1 CD30 CD30 NNP cord-010027-r0tl01kq 1675 2 can can MD cord-010027-r0tl01kq 1675 3 also also RB cord-010027-r0tl01kq 1675 4 be be VB cord-010027-r0tl01kq 1675 5 up up RB cord-010027-r0tl01kq 1675 6 regulated regulate VBN cord-010027-r0tl01kq 1675 7 in in IN cord-010027-r0tl01kq 1675 8 activated activate VBN cord-010027-r0tl01kq 1675 9 B B NNP cord-010027-r0tl01kq 1675 10 and and CC cord-010027-r0tl01kq 1675 11 T T NNP cord-010027-r0tl01kq 1675 12 cells cell NNS cord-010027-r0tl01kq 1675 13 and and CC cord-010027-r0tl01kq 1675 14 it -PRON- PRP cord-010027-r0tl01kq 1675 15 has have VBZ cord-010027-r0tl01kq 1675 16 been be VBN cord-010027-r0tl01kq 1675 17 proposed propose VBN cord-010027-r0tl01kq 1675 18 that that IN cord-010027-r0tl01kq 1675 19 CD30 CD30 NNP cord-010027-r0tl01kq 1675 20 positive positive JJ cord-010027-r0tl01kq 1675 21 ivTLPDs ivtlpd NNS cord-010027-r0tl01kq 1675 22 are be VBP cord-010027-r0tl01kq 1675 23 equivalent equivalent JJ cord-010027-r0tl01kq 1675 24 to to IN cord-010027-r0tl01kq 1675 25 an an DT cord-010027-r0tl01kq 1675 26 intravascular intravascular JJ cord-010027-r0tl01kq 1675 27 form form NN cord-010027-r0tl01kq 1675 28 of of IN cord-010027-r0tl01kq 1675 29 LyP. LyP. NNP cord-010027-r0tl01kq 1675 30 Intravascular Intravascular NNP cord-010027-r0tl01kq 1675 31 proliferations proliferation NNS cord-010027-r0tl01kq 1675 32 of of IN cord-010027-r0tl01kq 1675 33 atypical atypical JJ cord-010027-r0tl01kq 1675 34 CD30 CD30 NNP cord-010027-r0tl01kq 1675 35 positive positive JJ cord-010027-r0tl01kq 1675 36 T t NN cord-010027-r0tl01kq 1675 37 cells cell NNS cord-010027-r0tl01kq 1675 38 have have VBP cord-010027-r0tl01kq 1675 39 been be VBN cord-010027-r0tl01kq 1675 40 linked link VBN cord-010027-r0tl01kq 1675 41 with with IN cord-010027-r0tl01kq 1675 42 chronic chronic JJ cord-010027-r0tl01kq 1675 43 inflammation inflammation NN cord-010027-r0tl01kq 1675 44 and and CC cord-010027-r0tl01kq 1675 45 abscess abscess NN cord-010027-r0tl01kq 1675 46 formation formation NN cord-010027-r0tl01kq 1675 47 . . . cord-010027-r0tl01kq 1676 1 Furthermore furthermore RB cord-010027-r0tl01kq 1676 2 atypical atypical JJ cord-010027-r0tl01kq 1676 3 CD30 CD30 NNP cord-010027-r0tl01kq 1676 4 positive positive JJ cord-010027-r0tl01kq 1676 5 TLPD TLPD NNP cord-010027-r0tl01kq 1676 6 expressing express VBG cord-010027-r0tl01kq 1676 7 a a DT cord-010027-r0tl01kq 1676 8 CD4 CD4 NNP cord-010027-r0tl01kq 1676 9 positive positive JJ cord-010027-r0tl01kq 1676 10 T T NNP cord-010027-r0tl01kq 1676 11 helper helper NN cord-010027-r0tl01kq 1676 12 phenotype phenotype NN cord-010027-r0tl01kq 1676 13 and and CC cord-010027-r0tl01kq 1676 14 exhibiting exhibit VBG cord-010027-r0tl01kq 1676 15 an an DT cord-010027-r0tl01kq 1676 16 indolent indolent JJ cord-010027-r0tl01kq 1676 17 clinical clinical JJ cord-010027-r0tl01kq 1676 18 course course NN cord-010027-r0tl01kq 1676 19 have have VBP cord-010027-r0tl01kq 1676 20 been be VBN cord-010027-r0tl01kq 1676 21 reported report VBN cord-010027-r0tl01kq 1676 22 in in IN cord-010027-r0tl01kq 1676 23 the the DT cord-010027-r0tl01kq 1676 24 arm arm NN cord-010027-r0tl01kq 1676 25 , , , cord-010027-r0tl01kq 1676 26 trunk trunk NN cord-010027-r0tl01kq 1676 27 , , , cord-010027-r0tl01kq 1676 28 neck neck NN cord-010027-r0tl01kq 1676 29 and and CC cord-010027-r0tl01kq 1676 30 prepuce prepuce NN cord-010027-r0tl01kq 1676 31 . . . cord-010027-r0tl01kq 1677 1 Ultimately ultimately RB cord-010027-r0tl01kq 1677 2 ivTLPD ivtlpd PRP cord-010027-r0tl01kq 1677 3 may may MD cord-010027-r0tl01kq 1677 4 require require VB cord-010027-r0tl01kq 1677 5 follow follow VB cord-010027-r0tl01kq 1677 6 up up RP cord-010027-r0tl01kq 1677 7 based base VBN cord-010027-r0tl01kq 1677 8 upon upon IN cord-010027-r0tl01kq 1677 9 clinical clinical JJ cord-010027-r0tl01kq 1677 10 features feature NNS cord-010027-r0tl01kq 1677 11 and and CC cord-010027-r0tl01kq 1677 12 natural natural JJ cord-010027-r0tl01kq 1677 13 progression progression NN cord-010027-r0tl01kq 1677 14 due due IN cord-010027-r0tl01kq 1677 15 to to IN cord-010027-r0tl01kq 1677 16 overlapping overlap VBG cord-010027-r0tl01kq 1677 17 diagnostic diagnostic JJ cord-010027-r0tl01kq 1677 18 features feature NNS cord-010027-r0tl01kq 1677 19 . . . cord-010027-r0tl01kq 1678 1 P p NN cord-010027-r0tl01kq 1678 2 G G NNP cord-010027-r0tl01kq 1678 3 Laing Laing NNP cord-010027-r0tl01kq 1678 4 ; ; : cord-010027-r0tl01kq 1678 5 S S NNP cord-010027-r0tl01kq 1678 6 Craig Craig NNP cord-010027-r0tl01kq 1678 7 ; ; : cord-010027-r0tl01kq 1678 8 L L NNP cord-010027-r0tl01kq 1678 9 Moss Moss NNP cord-010027-r0tl01kq 1678 10 ; ; : cord-010027-r0tl01kq 1678 11 C C NNP cord-010027-r0tl01kq 1678 12 Crichton Crichton NNP cord-010027-r0tl01kq 1678 13 ; ; : cord-010027-r0tl01kq 1678 14 P P NNP cord-010027-r0tl01kq 1678 15 Johnston Johnston NNP cord-010027-r0tl01kq 1679 1 The the DT cord-010027-r0tl01kq 1679 2 investigation investigation NN cord-010027-r0tl01kq 1679 3 of of IN cord-010027-r0tl01kq 1679 4 lymphoid lymphoid JJ cord-010027-r0tl01kq 1679 5 neoplasia neoplasia NN cord-010027-r0tl01kq 1679 6 requires require VBZ cord-010027-r0tl01kq 1679 7 multiple multiple JJ cord-010027-r0tl01kq 1679 8 sections section NNS cord-010027-r0tl01kq 1679 9 , , , cord-010027-r0tl01kq 1679 10 in in IN cord-010027-r0tl01kq 1679 11 our -PRON- PRP$ cord-010027-r0tl01kq 1679 12 practice practice NN cord-010027-r0tl01kq 1679 13 consisting consist VBG cord-010027-r0tl01kq 1679 14 of of IN cord-010027-r0tl01kq 1679 15 twelve twelve CD cord-010027-r0tl01kq 1679 16 antibodies antibody NNS cord-010027-r0tl01kq 1679 17 and and CC cord-010027-r0tl01kq 1679 18 thirteen thirteen CD cord-010027-r0tl01kq 1679 19 single single JJ cord-010027-r0tl01kq 1679 20 stained stained JJ cord-010027-r0tl01kq 1679 21 slides slide NNS cord-010027-r0tl01kq 1679 22 . . . cord-010027-r0tl01kq 1680 1 By by IN cord-010027-r0tl01kq 1680 2 selecting select VBG cord-010027-r0tl01kq 1680 3 particular particular JJ cord-010027-r0tl01kq 1680 4 antibodies antibody NNS cord-010027-r0tl01kq 1680 5 for for IN cord-010027-r0tl01kq 1680 6 double double JJ cord-010027-r0tl01kq 1680 7 staining staining NN cord-010027-r0tl01kq 1680 8 , , , cord-010027-r0tl01kq 1680 9 spatial spatial JJ cord-010027-r0tl01kq 1680 10 relationships relationship NNS cord-010027-r0tl01kq 1680 11 between between IN cord-010027-r0tl01kq 1680 12 cell cell NN cord-010027-r0tl01kq 1680 13 types type NNS cord-010027-r0tl01kq 1680 14 and and CC cord-010027-r0tl01kq 1680 15 overall overall JJ cord-010027-r0tl01kq 1680 16 tissue tissue NN cord-010027-r0tl01kq 1680 17 organisation organisation NN cord-010027-r0tl01kq 1680 18 can can MD cord-010027-r0tl01kq 1680 19 be be VB cord-010027-r0tl01kq 1680 20 more more RBR cord-010027-r0tl01kq 1680 21 easily easily RB cord-010027-r0tl01kq 1680 22 visualised visualise VBN cord-010027-r0tl01kq 1680 23 . . . cord-010027-r0tl01kq 1681 1 This this DT cord-010027-r0tl01kq 1681 2 pilot pilot NN cord-010027-r0tl01kq 1681 3 study study NN cord-010027-r0tl01kq 1681 4 aimed aim VBN cord-010027-r0tl01kq 1681 5 to to TO cord-010027-r0tl01kq 1681 6 optimise optimise VB cord-010027-r0tl01kq 1681 7 the the DT cord-010027-r0tl01kq 1681 8 staining stain VBG cord-010027-r0tl01kq 1681 9 intensity intensity NN cord-010027-r0tl01kq 1681 10 and and CC cord-010027-r0tl01kq 1681 11 specificity specificity NN cord-010027-r0tl01kq 1681 12 to to TO cord-010027-r0tl01kq 1681 13 provide provide VB cord-010027-r0tl01kq 1681 14 accurate accurate JJ cord-010027-r0tl01kq 1681 15 diagnostic diagnostic JJ cord-010027-r0tl01kq 1681 16 information information NN cord-010027-r0tl01kq 1681 17 , , , cord-010027-r0tl01kq 1681 18 reduce reduce VB cord-010027-r0tl01kq 1681 19 slide slide NN cord-010027-r0tl01kq 1681 20 number number NN cord-010027-r0tl01kq 1681 21 , , , cord-010027-r0tl01kq 1681 22 material material NN cord-010027-r0tl01kq 1681 23 and and CC cord-010027-r0tl01kq 1681 24 consumables consumable NNS cord-010027-r0tl01kq 1681 25 costs cost NNS cord-010027-r0tl01kq 1681 26 , , , cord-010027-r0tl01kq 1681 27 preparation preparation NN cord-010027-r0tl01kq 1681 28 time time NN cord-010027-r0tl01kq 1681 29 in in IN cord-010027-r0tl01kq 1681 30 the the DT cord-010027-r0tl01kq 1681 31 laboratory laboratory NN cord-010027-r0tl01kq 1681 32 and and CC cord-010027-r0tl01kq 1681 33 storage storage NN cord-010027-r0tl01kq 1681 34 space space NN cord-010027-r0tl01kq 1681 35 to to TO cord-010027-r0tl01kq 1681 36 enhance enhance VB cord-010027-r0tl01kq 1681 37 costbenefit costbenefit NNP cord-010027-r0tl01kq 1681 38 . . . cord-010027-r0tl01kq 1682 1 Twelve twelve CD cord-010027-r0tl01kq 1682 2 antibodies antibody NNS cord-010027-r0tl01kq 1682 3 were be VBD cord-010027-r0tl01kq 1682 4 chosen choose VBN cord-010027-r0tl01kq 1682 5 and and CC cord-010027-r0tl01kq 1682 6 paired pair VBN cord-010027-r0tl01kq 1682 7 : : : cord-010027-r0tl01kq 1682 8 kappa kappa NNP cord-010027-r0tl01kq 1682 9 / / SYM cord-010027-r0tl01kq 1682 10 lambda lambda NNP cord-010027-r0tl01kq 1682 11 , , , cord-010027-r0tl01kq 1682 12 CD3 CD3 NNP cord-010027-r0tl01kq 1682 13 / / SYM cord-010027-r0tl01kq 1682 14 CD20 CD20 NNP cord-010027-r0tl01kq 1682 15 , , , cord-010027-r0tl01kq 1682 16 MUM-1 MUM-1 NNP cord-010027-r0tl01kq 1682 17 / / SYM cord-010027-r0tl01kq 1682 18 CD10 CD10 NNP cord-010027-r0tl01kq 1682 19 , , , cord-010027-r0tl01kq 1682 20 Cyclin Cyclin NNP cord-010027-r0tl01kq 1682 21 D1 D1 NNP cord-010027-r0tl01kq 1682 22 / / SYM cord-010027-r0tl01kq 1682 23 CD30 CD30 NNP cord-010027-r0tl01kq 1682 24 , , , cord-010027-r0tl01kq 1682 25 BCL-6 BCL-6 NNP cord-010027-r0tl01kq 1682 26 / / SYM cord-010027-r0tl01kq 1682 27 CD5 CD5 NNP cord-010027-r0tl01kq 1682 28 and and CC cord-010027-r0tl01kq 1682 29 CD5 CD5 NNP cord-010027-r0tl01kq 1682 30 / / SYM cord-010027-r0tl01kq 1682 31 PAX-5 PAX-5 NNP cord-010027-r0tl01kq 1682 32 . . . cord-010027-r0tl01kq 1683 1 Firstly firstly RB cord-010027-r0tl01kq 1683 2 , , , cord-010027-r0tl01kq 1683 3 these these DT cord-010027-r0tl01kq 1683 4 combinations combination NNS cord-010027-r0tl01kq 1683 5 were be VBD cord-010027-r0tl01kq 1683 6 applied apply VBN cord-010027-r0tl01kq 1683 7 to to IN cord-010027-r0tl01kq 1683 8 normal normal JJ cord-010027-r0tl01kq 1683 9 tissue tissue NN cord-010027-r0tl01kq 1683 10 and and CC cord-010027-r0tl01kq 1683 11 then then RB cord-010027-r0tl01kq 1683 12 known know VBN cord-010027-r0tl01kq 1683 13 tumours tumour NNS cord-010027-r0tl01kq 1683 14 to to TO cord-010027-r0tl01kq 1683 15 optimise optimise VB cord-010027-r0tl01kq 1683 16 technique technique NN cord-010027-r0tl01kq 1683 17 . . . cord-010027-r0tl01kq 1684 1 Once once IN cord-010027-r0tl01kq 1684 2 the the DT cord-010027-r0tl01kq 1684 3 staining staining NN cord-010027-r0tl01kq 1684 4 protocols protocol NNS cord-010027-r0tl01kq 1684 5 were be VBD cord-010027-r0tl01kq 1684 6 finalised finalise VBN cord-010027-r0tl01kq 1684 7 they -PRON- PRP cord-010027-r0tl01kq 1684 8 were be VBD cord-010027-r0tl01kq 1684 9 run run VBN cord-010027-r0tl01kq 1684 10 on on IN cord-010027-r0tl01kq 1684 11 eleven eleven CD cord-010027-r0tl01kq 1684 12 consecutive consecutive JJ cord-010027-r0tl01kq 1684 13 cases case NNS cord-010027-r0tl01kq 1684 14 with with IN cord-010027-r0tl01kq 1684 15 conventionally conventionally RB cord-010027-r0tl01kq 1684 16 stained stain VBN cord-010027-r0tl01kq 1684 17 Non Non NNP cord-010027-r0tl01kq 1684 18 - - JJ cord-010027-r0tl01kq 1684 19 Hodgkin Hodgkin NNP cord-010027-r0tl01kq 1684 20 Lymphoma Lymphoma NNP cord-010027-r0tl01kq 1684 21 ( ( -LRB- cord-010027-r0tl01kq 1684 22 NHL NHL NNP cord-010027-r0tl01kq 1684 23 ) ) -RRB- cord-010027-r0tl01kq 1684 24 panel panel NN cord-010027-r0tl01kq 1684 25 requests request NNS cord-010027-r0tl01kq 1684 26 . . . cord-010027-r0tl01kq 1685 1 The the DT cord-010027-r0tl01kq 1685 2 slides slide NNS cord-010027-r0tl01kq 1685 3 were be VBD cord-010027-r0tl01kq 1685 4 then then RB cord-010027-r0tl01kq 1685 5 reviewed review VBN cord-010027-r0tl01kq 1685 6 by by IN cord-010027-r0tl01kq 1685 7 the the DT cord-010027-r0tl01kq 1685 8 Lymphoma Lymphoma NNP cord-010027-r0tl01kq 1685 9 team team NN cord-010027-r0tl01kq 1685 10 for for IN cord-010027-r0tl01kq 1685 11 quality quality NN cord-010027-r0tl01kq 1685 12 and and CC cord-010027-r0tl01kq 1685 13 diagnostic diagnostic JJ cord-010027-r0tl01kq 1685 14 accuracy accuracy NN cord-010027-r0tl01kq 1685 15 compared compare VBN cord-010027-r0tl01kq 1685 16 to to IN cord-010027-r0tl01kq 1685 17 the the DT cord-010027-r0tl01kq 1685 18 standard standard JJ cord-010027-r0tl01kq 1685 19 single single JJ cord-010027-r0tl01kq 1685 20 stained stained JJ cord-010027-r0tl01kq 1685 21 slides slide NNS cord-010027-r0tl01kq 1685 22 . . . cord-010027-r0tl01kq 1686 1 The the DT cord-010027-r0tl01kq 1686 2 results result NNS cord-010027-r0tl01kq 1686 3 demonstrate demonstrate VBP cord-010027-r0tl01kq 1686 4 that that IN cord-010027-r0tl01kq 1686 5 double double JJ cord-010027-r0tl01kq 1686 6 staining staining NN cord-010027-r0tl01kq 1686 7 is be VBZ cord-010027-r0tl01kq 1686 8 possible possible JJ cord-010027-r0tl01kq 1686 9 in in IN cord-010027-r0tl01kq 1686 10 the the DT cord-010027-r0tl01kq 1686 11 diagnosis diagnosis NN cord-010027-r0tl01kq 1686 12 of of IN cord-010027-r0tl01kq 1686 13 NHL NHL NNP cord-010027-r0tl01kq 1686 14 . . . cord-010027-r0tl01kq 1687 1 The the DT cord-010027-r0tl01kq 1687 2 combinations combination NNS cord-010027-r0tl01kq 1687 3 chosen choose VBN cord-010027-r0tl01kq 1687 4 have have VBP cord-010027-r0tl01kq 1687 5 proved prove VBN cord-010027-r0tl01kq 1687 6 successful successful JJ cord-010027-r0tl01kq 1687 7 and and CC cord-010027-r0tl01kq 1687 8 have have VBP cord-010027-r0tl01kq 1687 9 provided provide VBN cord-010027-r0tl01kq 1687 10 interpretable interpretable JJ cord-010027-r0tl01kq 1687 11 results result NNS cord-010027-r0tl01kq 1687 12 ; ; : cord-010027-r0tl01kq 1687 13 for for IN cord-010027-r0tl01kq 1687 14 example example NN cord-010027-r0tl01kq 1687 15 , , , cord-010027-r0tl01kq 1687 16 the the DT cord-010027-r0tl01kq 1687 17 relationship relationship NN cord-010027-r0tl01kq 1687 18 of of IN cord-010027-r0tl01kq 1687 19 light light JJ cord-010027-r0tl01kq 1687 20 chain chain NN cord-010027-r0tl01kq 1687 21 staining stain VBG cord-010027-r0tl01kq 1687 22 in in IN cord-010027-r0tl01kq 1687 23 plasma plasma NN cord-010027-r0tl01kq 1687 24 cells cell NNS cord-010027-r0tl01kq 1687 25 , , , cord-010027-r0tl01kq 1687 26 MUM-1 MUM-1 NNP cord-010027-r0tl01kq 1687 27 and and CC cord-010027-r0tl01kq 1687 28 CD10 CD10 NNP cord-010027-r0tl01kq 1687 29 positive positive JJ cord-010027-r0tl01kq 1687 30 cells cell NNS cord-010027-r0tl01kq 1687 31 in in IN cord-010027-r0tl01kq 1687 32 Diffuse diffuse JJ cord-010027-r0tl01kq 1687 33 Large large JJ cord-010027-r0tl01kq 1687 34 B b NN cord-010027-r0tl01kq 1687 35 - - HYPH cord-010027-r0tl01kq 1687 36 cell cell NN cord-010027-r0tl01kq 1687 37 Lymphoma Lymphoma NNP cord-010027-r0tl01kq 1687 38 proves prove VBZ cord-010027-r0tl01kq 1687 39 positive positive JJ cord-010027-r0tl01kq 1687 40 . . . cord-010027-r0tl01kq 1688 1 We -PRON- PRP cord-010027-r0tl01kq 1688 2 feel feel VBP cord-010027-r0tl01kq 1688 3 time time NN cord-010027-r0tl01kq 1688 4 will will MD cord-010027-r0tl01kq 1688 5 be be VB cord-010027-r0tl01kq 1688 6 saved save VBN cord-010027-r0tl01kq 1688 7 cutting cut VBG cord-010027-r0tl01kq 1688 8 sections section NNS cord-010027-r0tl01kq 1688 9 to to TO cord-010027-r0tl01kq 1688 10 improve improve VB cord-010027-r0tl01kq 1688 11 efficiency efficiency NN cord-010027-r0tl01kq 1688 12 in in IN cord-010027-r0tl01kq 1688 13 Lymphoma Lymphoma NNP cord-010027-r0tl01kq 1688 14 investigation investigation NN cord-010027-r0tl01kq 1688 15 and and CC cord-010027-r0tl01kq 1688 16 reduce reduce VB cord-010027-r0tl01kq 1688 17 panel panel NN cord-010027-r0tl01kq 1688 18 storage storage NN cord-010027-r0tl01kq 1688 19 space space NN cord-010027-r0tl01kq 1688 20 by by IN cord-010027-r0tl01kq 1688 21 around around IN cord-010027-r0tl01kq 1688 22 30 30 CD cord-010027-r0tl01kq 1688 23 % % NN cord-010027-r0tl01kq 1688 24 . . . cord-010027-r0tl01kq 1689 1 In in IN cord-010027-r0tl01kq 1689 2 conclusion conclusion NN cord-010027-r0tl01kq 1689 3 the the DT cord-010027-r0tl01kq 1689 4 outcomes outcome NNS cord-010027-r0tl01kq 1689 5 from from IN cord-010027-r0tl01kq 1689 6 this this DT cord-010027-r0tl01kq 1689 7 pilot pilot NN cord-010027-r0tl01kq 1689 8 study study NN cord-010027-r0tl01kq 1689 9 have have VBP cord-010027-r0tl01kq 1689 10 been be VBN cord-010027-r0tl01kq 1689 11 positive positive JJ cord-010027-r0tl01kq 1689 12 for for IN cord-010027-r0tl01kq 1689 13 medical medical JJ cord-010027-r0tl01kq 1689 14 and and CC cord-010027-r0tl01kq 1689 15 scientific scientific JJ cord-010027-r0tl01kq 1689 16 staff staff NN cord-010027-r0tl01kq 1689 17 , , , cord-010027-r0tl01kq 1689 18 has have VBZ cord-010027-r0tl01kq 1689 19 shown show VBN cord-010027-r0tl01kq 1689 20 that that IN cord-010027-r0tl01kq 1689 21 double double JJ cord-010027-r0tl01kq 1689 22 staining staining NN cord-010027-r0tl01kq 1689 23 in in IN cord-010027-r0tl01kq 1689 24 the the DT cord-010027-r0tl01kq 1689 25 diagnosis diagnosis NN cord-010027-r0tl01kq 1689 26 of of IN cord-010027-r0tl01kq 1689 27 NHL NHL NNP cord-010027-r0tl01kq 1689 28 is be VBZ cord-010027-r0tl01kq 1689 29 possible possible JJ cord-010027-r0tl01kq 1689 30 and and CC cord-010027-r0tl01kq 1689 31 that that IN cord-010027-r0tl01kq 1689 32 optimising optimise VBG cord-010027-r0tl01kq 1689 33 this this DT cord-010027-r0tl01kq 1689 34 protocol protocol NN cord-010027-r0tl01kq 1689 35 with with IN cord-010027-r0tl01kq 1689 36 a a DT cord-010027-r0tl01kq 1689 37 view view NN cord-010027-r0tl01kq 1689 38 to to TO cord-010027-r0tl01kq 1689 39 live live VB cord-010027-r0tl01kq 1689 40 diagnosis diagnosis NN cord-010027-r0tl01kq 1689 41 is be VBZ cord-010027-r0tl01kq 1689 42 worthwhile worthwhile JJ cord-010027-r0tl01kq 1689 43 . . . cord-010027-r0tl01kq 1690 1 In in IN cord-010027-r0tl01kq 1690 2 an an DT cord-010027-r0tl01kq 1690 3 Age Age NNP cord-010027-r0tl01kq 1690 4 in in IN cord-010027-r0tl01kq 1690 5 which which WDT cord-010027-r0tl01kq 1690 6 Novel novel JJ cord-010027-r0tl01kq 1690 7 therapies therapy NNS cord-010027-r0tl01kq 1690 8 are be VBP cord-010027-r0tl01kq 1690 9 not not RB cord-010027-r0tl01kq 1690 10 necessarily necessarily RB cord-010027-r0tl01kq 1690 11 defined define VBN cord-010027-r0tl01kq 1690 12 by by IN cord-010027-r0tl01kq 1690 13 their -PRON- PRP$ cord-010027-r0tl01kq 1690 14 ability ability NN cord-010027-r0tl01kq 1690 15 to to TO cord-010027-r0tl01kq 1690 16 kill kill VB cord-010027-r0tl01kq 1690 17 malignant malignant JJ cord-010027-r0tl01kq 1690 18 cells cell NNS cord-010027-r0tl01kq 1690 19 , , , cord-010027-r0tl01kq 1690 20 understanding understand VBG cord-010027-r0tl01kq 1690 21 the the DT cord-010027-r0tl01kq 1690 22 biology biology NN cord-010027-r0tl01kq 1690 23 of of IN cord-010027-r0tl01kq 1690 24 malignant malignant JJ cord-010027-r0tl01kq 1690 25 cells cell NNS cord-010027-r0tl01kq 1690 26 after after IN cord-010027-r0tl01kq 1690 27 treatment treatment NN cord-010027-r0tl01kq 1690 28 is be VBZ cord-010027-r0tl01kq 1690 29 extremely extremely RB cord-010027-r0tl01kq 1690 30 important important JJ cord-010027-r0tl01kq 1690 31 . . . cord-010027-r0tl01kq 1691 1 This this DT cord-010027-r0tl01kq 1691 2 is be VBZ cord-010027-r0tl01kq 1691 3 particularly particularly RB cord-010027-r0tl01kq 1691 4 true true JJ cord-010027-r0tl01kq 1691 5 of of IN cord-010027-r0tl01kq 1691 6 Ibrutinib Ibrutinib NNP cord-010027-r0tl01kq 1691 7 ( ( -LRB- cord-010027-r0tl01kq 1691 8 Pcl-32765 Pcl-32765 NNP cord-010027-r0tl01kq 1691 9 ) ) -RRB- cord-010027-r0tl01kq 1691 10 therapy therapy NN cord-010027-r0tl01kq 1691 11 in in IN cord-010027-r0tl01kq 1691 12 chronic chronic JJ cord-010027-r0tl01kq 1691 13 lymphocytic lymphocytic JJ cord-010027-r0tl01kq 1691 14 leukaemia leukaemia NN cord-010027-r0tl01kq 1691 15 which which WDT cord-010027-r0tl01kq 1691 16 is be VBZ cord-010027-r0tl01kq 1691 17 characterised characterise VBN cord-010027-r0tl01kq 1691 18 by by IN cord-010027-r0tl01kq 1691 19 lymphocytosis lymphocytosis NNP cord-010027-r0tl01kq 1691 20 . . . cord-010027-r0tl01kq 1692 1 Imagej Imagej NNP cord-010027-r0tl01kq 1692 2 / / SYM cord-010027-r0tl01kq 1692 3 Fiji Fiji NNP cord-010027-r0tl01kq 1692 4 image image NN cord-010027-r0tl01kq 1692 5 analysis analysis NN cord-010027-r0tl01kq 1692 6 software software NN cord-010027-r0tl01kq 1692 7 could could MD cord-010027-r0tl01kq 1692 8 therefore therefore RB cord-010027-r0tl01kq 1692 9 be be VB cord-010027-r0tl01kq 1692 10 used use VBN cord-010027-r0tl01kq 1692 11 to to TO cord-010027-r0tl01kq 1692 12 analyse analyse VB cord-010027-r0tl01kq 1692 13 cell cell NN cord-010027-r0tl01kq 1692 14 shape shape NN cord-010027-r0tl01kq 1692 15 and and CC cord-010027-r0tl01kq 1692 16 grouping grouping NN cord-010027-r0tl01kq 1692 17 characteristics characteristic NNS cord-010027-r0tl01kq 1692 18 . . . cord-010027-r0tl01kq 1693 1 We -PRON- PRP cord-010027-r0tl01kq 1693 2 used use VBD cord-010027-r0tl01kq 1693 3 a a DT cord-010027-r0tl01kq 1693 4 novel novel JJ cord-010027-r0tl01kq 1693 5 assay assay NN cord-010027-r0tl01kq 1693 6 in in IN cord-010027-r0tl01kq 1693 7 which which WDT cord-010027-r0tl01kq 1693 8 Chronic Chronic NNP cord-010027-r0tl01kq 1693 9 Lymphocytic lymphocytic JJ cord-010027-r0tl01kq 1693 10 Leukaemia Leukaemia NNP cord-010027-r0tl01kq 1693 11 cells cell NNS cord-010027-r0tl01kq 1693 12 , , , cord-010027-r0tl01kq 1693 13 cultured culture VBN cord-010027-r0tl01kq 1693 14 for for IN cord-010027-r0tl01kq 1693 15 5 5 CD cord-010027-r0tl01kq 1693 16 days day NNS cord-010027-r0tl01kq 1693 17 , , , cord-010027-r0tl01kq 1693 18 were be VBD cord-010027-r0tl01kq 1693 19 seeded seed VBN cord-010027-r0tl01kq 1693 20 onto onto IN cord-010027-r0tl01kq 1693 21 fibronectin fibronectin NN cord-010027-r0tl01kq 1693 22 coated coat VBN cord-010027-r0tl01kq 1693 23 glass glass NN cord-010027-r0tl01kq 1693 24 coverslips coverslip NNS cord-010027-r0tl01kq 1693 25 and and CC cord-010027-r0tl01kq 1693 26 then then RB cord-010027-r0tl01kq 1693 27 had have VBD cord-010027-r0tl01kq 1693 28 their -PRON- PRP$ cord-010027-r0tl01kq 1693 29 B b NN cord-010027-r0tl01kq 1693 30 cell cell NN cord-010027-r0tl01kq 1693 31 receptors receptor NNS cord-010027-r0tl01kq 1693 32 ligated ligate VBN cord-010027-r0tl01kq 1693 33 with with IN cord-010027-r0tl01kq 1693 34 goat goat NN cord-010027-r0tl01kq 1693 35 anti anti NNP cord-010027-r0tl01kq 1693 36 human human JJ cord-010027-r0tl01kq 1693 37 Igm Igm NNP cord-010027-r0tl01kq 1693 38 . . . cord-010027-r0tl01kq 1694 1 They -PRON- PRP cord-010027-r0tl01kq 1694 2 were be VBD cord-010027-r0tl01kq 1694 3 compared compare VBN cord-010027-r0tl01kq 1694 4 with with IN cord-010027-r0tl01kq 1694 5 cells cell NNS cord-010027-r0tl01kq 1694 6 simultaneously simultaneously RB cord-010027-r0tl01kq 1694 7 inhibited inhibit VBN cord-010027-r0tl01kq 1694 8 with with IN cord-010027-r0tl01kq 1694 9 Ibrutinib Ibrutinib NNP cord-010027-r0tl01kq 1694 10 . . . cord-010027-r0tl01kq 1695 1 We -PRON- PRP cord-010027-r0tl01kq 1695 2 tested test VBD cord-010027-r0tl01kq 1695 3 multiple multiple JJ cord-010027-r0tl01kq 1695 4 staining staining NN cord-010027-r0tl01kq 1695 5 techniques technique NNS cord-010027-r0tl01kq 1695 6 and and CC cord-010027-r0tl01kq 1695 7 found find VBD cord-010027-r0tl01kq 1695 8 that that IN cord-010027-r0tl01kq 1695 9 using use VBG cord-010027-r0tl01kq 1695 10 either either CC cord-010027-r0tl01kq 1695 11 Rose Rose NNP cord-010027-r0tl01kq 1695 12 Bengal Bengal NNP cord-010027-r0tl01kq 1695 13 or or CC cord-010027-r0tl01kq 1695 14 Texas Texas NNP cord-010027-r0tl01kq 1695 15 Red Red NNP cord-010027-r0tl01kq 1695 16 Phalloidin Phalloidin NNP cord-010027-r0tl01kq 1695 17 staining staining NN cord-010027-r0tl01kq 1695 18 produced produce VBD cord-010027-r0tl01kq 1695 19 the the DT cord-010027-r0tl01kq 1695 20 most most RBS cord-010027-r0tl01kq 1695 21 reproducibly reproducibly RB cord-010027-r0tl01kq 1695 22 analysable analysable JJ cord-010027-r0tl01kq 1695 23 data datum NNS cord-010027-r0tl01kq 1695 24 when when WRB cord-010027-r0tl01kq 1695 25 using use VBG cord-010027-r0tl01kq 1695 26 Imagej/ Imagej/ NNP cord-010027-r0tl01kq 1695 27 Fiji Fiji NNP cord-010027-r0tl01kq 1695 28 . . . cord-010027-r0tl01kq 1696 1 We -PRON- PRP cord-010027-r0tl01kq 1696 2 demonstrated demonstrate VBD cord-010027-r0tl01kq 1696 3 , , , cord-010027-r0tl01kq 1696 4 using use VBG cord-010027-r0tl01kq 1696 5 the the DT cord-010027-r0tl01kq 1696 6 assumption assumption NN cord-010027-r0tl01kq 1696 7 that that IN cord-010027-r0tl01kq 1696 8 the the DT cord-010027-r0tl01kq 1696 9 outline outline NN cord-010027-r0tl01kq 1696 10 of of IN cord-010027-r0tl01kq 1696 11 interacting interact VBG cord-010027-r0tl01kq 1696 12 cells cell NNS cord-010027-r0tl01kq 1696 13 would would MD cord-010027-r0tl01kq 1696 14 be be VB cord-010027-r0tl01kq 1696 15 larger large JJR cord-010027-r0tl01kq 1696 16 than than IN cord-010027-r0tl01kq 1696 17 cells cell NNS cord-010027-r0tl01kq 1696 18 which which WDT cord-010027-r0tl01kq 1696 19 were be VBD cord-010027-r0tl01kq 1696 20 alone alone JJ cord-010027-r0tl01kq 1696 21 that that IN cord-010027-r0tl01kq 1696 22 Homotypic Homotypic NNP cord-010027-r0tl01kq 1696 23 interactions interaction NNS cord-010027-r0tl01kq 1696 24 were be VBD cord-010027-r0tl01kq 1696 25 increased increase VBN cord-010027-r0tl01kq 1696 26 after after IN cord-010027-r0tl01kq 1696 27 B B NNP cord-010027-r0tl01kq 1696 28 Cell Cell NNP cord-010027-r0tl01kq 1696 29 receptor receptor NN cord-010027-r0tl01kq 1696 30 cross cross NN cord-010027-r0tl01kq 1696 31 linking link VBG cord-010027-r0tl01kq 1696 32 ( ( -LRB- cord-010027-r0tl01kq 1696 33 54 54 CD cord-010027-r0tl01kq 1696 34 groups group NNS cord-010027-r0tl01kq 1696 35 larger large JJR cord-010027-r0tl01kq 1696 36 than than IN cord-010027-r0tl01kq 1696 37 2 2 CD cord-010027-r0tl01kq 1696 38 cells cell NNS cord-010027-r0tl01kq 1696 39 against against IN cord-010027-r0tl01kq 1696 40 35 35 CD cord-010027-r0tl01kq 1696 41 group group NN cord-010027-r0tl01kq 1696 42 larger large JJR cord-010027-r0tl01kq 1696 43 than than IN cord-010027-r0tl01kq 1696 44 2 2 CD cord-010027-r0tl01kq 1696 45 cells cell NNS cord-010027-r0tl01kq 1696 46 per per IN cord-010027-r0tl01kq 1696 47 500 500 CD cord-010027-r0tl01kq 1696 48 nm nm NN cord-010027-r0tl01kq 1696 49 X x NN cord-010027-r0tl01kq 1696 50 250 250 CD cord-010027-r0tl01kq 1696 51 nm nm NNP cord-010027-r0tl01kq 1696 52 Field Field NNP cord-010027-r0tl01kq 1696 53 ( ( -LRB- cord-010027-r0tl01kq 1696 54 P=0.019 P=0.019 NNP cord-010027-r0tl01kq 1696 55 ) ) -RRB- cord-010027-r0tl01kq 1696 56 ) ) -RRB- cord-010027-r0tl01kq 1696 57 . . . cord-010027-r0tl01kq 1697 1 Nuclei nucleus NNS cord-010027-r0tl01kq 1697 2 were be VBD cord-010027-r0tl01kq 1697 3 also also RB cord-010027-r0tl01kq 1697 4 significantly significantly RB cord-010027-r0tl01kq 1697 5 larger large JJR cord-010027-r0tl01kq 1697 6 when when WRB cord-010027-r0tl01kq 1697 7 cross cross NN cord-010027-r0tl01kq 1697 8 linked link VBN cord-010027-r0tl01kq 1697 9 . . . cord-010027-r0tl01kq 1698 1 ( ( -LRB- cord-010027-r0tl01kq 1698 2 Mean mean JJ cord-010027-r0tl01kq 1698 3 33.23 33.23 CD cord-010027-r0tl01kq 1698 4 ( ( -LRB- cord-010027-r0tl01kq 1698 5 + + CC cord-010027-r0tl01kq 1698 6 -0.43 -0.43 CD cord-010027-r0tl01kq 1698 7 ) ) -RRB- cord-010027-r0tl01kq 1698 8 pixels pixel NNS cord-010027-r0tl01kq 1698 9 without without IN cord-010027-r0tl01kq 1698 10 cross cross NN cord-010027-r0tl01kq 1698 11 linking linking NN cord-010027-r0tl01kq 1698 12 and and CC cord-010027-r0tl01kq 1698 13 44.15(+-0.57 44.15(+-0.57 NNP cord-010027-r0tl01kq 1698 14 ) ) -RRB- cord-010027-r0tl01kq 1699 1 ( ( -LRB- cord-010027-r0tl01kq 1699 2 P=≤0.0001 p=≤0.0001 NN cord-010027-r0tl01kq 1699 3 ) ) -RRB- cord-010027-r0tl01kq 1699 4 ) ) -RRB- cord-010027-r0tl01kq 1699 5 suggesting suggest VBG cord-010027-r0tl01kq 1699 6 increased increase VBN cord-010027-r0tl01kq 1699 7 nuclear nuclear JJ cord-010027-r0tl01kq 1699 8 spreading spreading NN cord-010027-r0tl01kq 1699 9 . . . cord-010027-r0tl01kq 1700 1 These these DT cord-010027-r0tl01kq 1700 2 effects effect NNS cord-010027-r0tl01kq 1700 3 were be VBD cord-010027-r0tl01kq 1700 4 reversed reverse VBN cord-010027-r0tl01kq 1700 5 by by IN cord-010027-r0tl01kq 1700 6 the the DT cord-010027-r0tl01kq 1700 7 addition addition NN cord-010027-r0tl01kq 1700 8 Of of IN cord-010027-r0tl01kq 1700 9 Ibrutinib Ibrutinib NNP cord-010027-r0tl01kq 1700 10 with with IN cord-010027-r0tl01kq 1700 11 18 18 CD cord-010027-r0tl01kq 1700 12 groups group NNS cord-010027-r0tl01kq 1700 13 larger large JJR cord-010027-r0tl01kq 1700 14 than than IN cord-010027-r0tl01kq 1700 15 2 2 CD cord-010027-r0tl01kq 1700 16 cells cell NNS cord-010027-r0tl01kq 1700 17 per per IN cord-010027-r0tl01kq 1700 18 the the DT cord-010027-r0tl01kq 1700 19 same same JJ cord-010027-r0tl01kq 1700 20 field(P=0.0252 field(p=0.0252 NN cord-010027-r0tl01kq 1700 21 compared compare VBN cord-010027-r0tl01kq 1700 22 with with IN cord-010027-r0tl01kq 1700 23 cross cross NN cord-010027-r0tl01kq 1700 24 linked link VBN cord-010027-r0tl01kq 1700 25 sells sell NNS cord-010027-r0tl01kq 1700 26 ) ) -RRB- cord-010027-r0tl01kq 1700 27 and and CC cord-010027-r0tl01kq 1700 28 Nuclear nuclear JJ cord-010027-r0tl01kq 1700 29 size size NN cord-010027-r0tl01kq 1700 30 mean mean VBP cord-010027-r0tl01kq 1700 31 being be VBG cord-010027-r0tl01kq 1700 32 33.83 33.83 CD cord-010027-r0tl01kq 1701 1 ( ( -LRB- cord-010027-r0tl01kq 1701 2 P≤0.0001 P≤0.0001 NNP cord-010027-r0tl01kq 1701 3 compared compare VBN cord-010027-r0tl01kq 1701 4 with with IN cord-010027-r0tl01kq 1701 5 cross cross NN cord-010027-r0tl01kq 1701 6 linked link VBN cord-010027-r0tl01kq 1701 7 cells cell NNS cord-010027-r0tl01kq 1701 8 ) ) -RRB- cord-010027-r0tl01kq 1701 9 . . . cord-010027-r0tl01kq 1702 1 This this DT cord-010027-r0tl01kq 1702 2 study study NN cord-010027-r0tl01kq 1702 3 demonstrates demonstrate VBZ cord-010027-r0tl01kq 1702 4 a a DT cord-010027-r0tl01kq 1702 5 novel novel NN cord-010027-r0tl01kq 1702 6 , , , cord-010027-r0tl01kq 1702 7 easily easily RB cord-010027-r0tl01kq 1702 8 reproducible reproducible JJ cord-010027-r0tl01kq 1702 9 assay assay NN cord-010027-r0tl01kq 1702 10 to to TO cord-010027-r0tl01kq 1702 11 assess assess VB cord-010027-r0tl01kq 1702 12 a a DT cord-010027-r0tl01kq 1702 13 variety variety NN cord-010027-r0tl01kq 1702 14 of of IN cord-010027-r0tl01kq 1702 15 cellular cellular JJ cord-010027-r0tl01kq 1702 16 responses response NNS cord-010027-r0tl01kq 1702 17 to to IN cord-010027-r0tl01kq 1702 18 Ibrutinib Ibrutinib NNP cord-010027-r0tl01kq 1702 19 therapy therapy NN cord-010027-r0tl01kq 1702 20 and and CC cord-010027-r0tl01kq 1702 21 suggests suggest VBZ cord-010027-r0tl01kq 1702 22 a a DT cord-010027-r0tl01kq 1702 23 method method NN cord-010027-r0tl01kq 1702 24 of of IN cord-010027-r0tl01kq 1702 25 quantifying quantify VBG cord-010027-r0tl01kq 1702 26 activity activity NN cord-010027-r0tl01kq 1702 27 both both CC cord-010027-r0tl01kq 1702 28 when when WRB cord-010027-r0tl01kq 1702 29 stimulated stimulate VBN cord-010027-r0tl01kq 1702 30 and and CC cord-010027-r0tl01kq 1702 31 inhibited inhibit VBN cord-010027-r0tl01kq 1702 32 . . . cord-010027-r0tl01kq 1703 1 This this DT cord-010027-r0tl01kq 1703 2 technique technique NN cord-010027-r0tl01kq 1703 3 could could MD cord-010027-r0tl01kq 1703 4 easily easily RB cord-010027-r0tl01kq 1703 5 be be VB cord-010027-r0tl01kq 1703 6 scaled scale VBN cord-010027-r0tl01kq 1703 7 up up RP cord-010027-r0tl01kq 1703 8 to to TO cord-010027-r0tl01kq 1703 9 further further RB cord-010027-r0tl01kq 1703 10 investigate investigate VB cord-010027-r0tl01kq 1703 11 cellular cellular JJ cord-010027-r0tl01kq 1703 12 behaviour behaviour NN cord-010027-r0tl01kq 1703 13 following follow VBG cord-010027-r0tl01kq 1703 14 Ibrutinib Ibrutinib NNP cord-010027-r0tl01kq 1703 15 therapy therapy NN cord-010027-r0tl01kq 1703 16 . . . cord-010027-r0tl01kq 1704 1 Purpose purpose NN cord-010027-r0tl01kq 1704 2 : : : cord-010027-r0tl01kq 1704 3 Gliomas Gliomas NNP cord-010027-r0tl01kq 1704 4 represent represent VBP cord-010027-r0tl01kq 1704 5 43 43 CD cord-010027-r0tl01kq 1704 6 % % NN cord-010027-r0tl01kq 1704 7 of of IN cord-010027-r0tl01kq 1704 8 all all DT cord-010027-r0tl01kq 1704 9 solid solid JJ cord-010027-r0tl01kq 1704 10 intracranial intracranial JJ cord-010027-r0tl01kq 1704 11 tumours tumour NNS cord-010027-r0tl01kq 1704 12 and and CC cord-010027-r0tl01kq 1704 13 are be VBP cord-010027-r0tl01kq 1704 14 associated associate VBN cord-010027-r0tl01kq 1704 15 with with IN cord-010027-r0tl01kq 1704 16 a a DT cord-010027-r0tl01kq 1704 17 poor poor JJ cord-010027-r0tl01kq 1704 18 prognosis prognosis NN cord-010027-r0tl01kq 1704 19 . . . cord-010027-r0tl01kq 1705 1 Recent recent JJ cord-010027-r0tl01kq 1705 2 studies study NNS cord-010027-r0tl01kq 1705 3 indicated indicate VBD cord-010027-r0tl01kq 1705 4 that that IN cord-010027-r0tl01kq 1705 5 the the DT cord-010027-r0tl01kq 1705 6 human human JJ cord-010027-r0tl01kq 1705 7 cytosolic cytosolic JJ cord-010027-r0tl01kq 1705 8 branched branched JJ cord-010027-r0tl01kq 1705 9 chain chain NN cord-010027-r0tl01kq 1705 10 aminotransferase aminotransferase NN cord-010027-r0tl01kq 1705 11 protein protein NN cord-010027-r0tl01kq 1705 12 ( ( -LRB- cord-010027-r0tl01kq 1705 13 hBCATc hBCATc NNP cord-010027-r0tl01kq 1705 14 ) ) -RRB- cord-010027-r0tl01kq 1705 15 , , , cord-010027-r0tl01kq 1705 16 which which WDT cord-010027-r0tl01kq 1705 17 metabolises metabolise VBZ cord-010027-r0tl01kq 1705 18 the the DT cord-010027-r0tl01kq 1705 19 branched branched JJ cord-010027-r0tl01kq 1705 20 chain chain NN cord-010027-r0tl01kq 1705 21 amino amino NN cord-010027-r0tl01kq 1705 22 acids acid NNS cord-010027-r0tl01kq 1705 23 ( ( -LRB- cord-010027-r0tl01kq 1705 24 BCAA BCAA NNP cord-010027-r0tl01kq 1705 25 ) ) -RRB- cord-010027-r0tl01kq 1705 26 , , , cord-010027-r0tl01kq 1705 27 was be VBD cord-010027-r0tl01kq 1705 28 significantly significantly RB cord-010027-r0tl01kq 1705 29 upregulated upregulate VBN cord-010027-r0tl01kq 1705 30 in in IN cord-010027-r0tl01kq 1705 31 IDH1/2 IDH1/2 `` cord-010027-r0tl01kq 1705 32 wild wild JJ cord-010027-r0tl01kq 1705 33 type type NN cord-010027-r0tl01kq 1705 34 ( ( -LRB- cord-010027-r0tl01kq 1705 35 WT WT NNP cord-010027-r0tl01kq 1705 36 ) ) -RRB- cord-010027-r0tl01kq 1705 37 glioblastomas glioblastomas NNP cord-010027-r0tl01kq 1705 38 , , , cord-010027-r0tl01kq 1705 39 correlated correlate VBN cord-010027-r0tl01kq 1705 40 with with IN cord-010027-r0tl01kq 1705 41 methylation methylation NN cord-010027-r0tl01kq 1705 42 patterns pattern NNS cord-010027-r0tl01kq 1705 43 in in IN cord-010027-r0tl01kq 1705 44 the the DT cord-010027-r0tl01kq 1705 45 BCAT1 BCAT1 NNP cord-010027-r0tl01kq 1705 46 promoter promoter NN cord-010027-r0tl01kq 1705 47 and and CC cord-010027-r0tl01kq 1705 48 is be VBZ cord-010027-r0tl01kq 1705 49 associated associate VBN cord-010027-r0tl01kq 1705 50 with with IN cord-010027-r0tl01kq 1705 51 a a DT cord-010027-r0tl01kq 1705 52 worse bad JJR cord-010027-r0tl01kq 1705 53 prognosis prognosis NN cord-010027-r0tl01kq 1705 54 compared compare VBN cord-010027-r0tl01kq 1705 55 with with IN cord-010027-r0tl01kq 1705 56 IDH IDH NNP cord-010027-r0tl01kq 1705 57 mutant mutant JJ cord-010027-r0tl01kq 1705 58 gliomas glioma NNS cord-010027-r0tl01kq 1705 59 . . . cord-010027-r0tl01kq 1706 1 The the DT cord-010027-r0tl01kq 1706 2 diagnostic diagnostic JJ cord-010027-r0tl01kq 1706 3 and and CC cord-010027-r0tl01kq 1706 4 prognostic prognostic JJ cord-010027-r0tl01kq 1706 5 significance significance NN cord-010027-r0tl01kq 1706 6 of of IN cord-010027-r0tl01kq 1706 7 markers marker NNS cord-010027-r0tl01kq 1706 8 of of IN cord-010027-r0tl01kq 1706 9 BCAA BCAA NNP cord-010027-r0tl01kq 1706 10 metabolism metabolism NN cord-010027-r0tl01kq 1706 11 is be VBZ cord-010027-r0tl01kq 1706 12 currently currently RB cord-010027-r0tl01kq 1706 13 under under IN cord-010027-r0tl01kq 1706 14 investigation investigation NN cord-010027-r0tl01kq 1706 15 . . . cord-010027-r0tl01kq 1707 1 Methods method NNS cord-010027-r0tl01kq 1707 2 : : : cord-010027-r0tl01kq 1707 3 64 64 CD cord-010027-r0tl01kq 1707 4 glioma glioma NN cord-010027-r0tl01kq 1707 5 tumour tumour NN cord-010027-r0tl01kq 1707 6 samples sample NNS cord-010027-r0tl01kq 1707 7 were be VBD cord-010027-r0tl01kq 1707 8 compared compare VBN cord-010027-r0tl01kq 1707 9 for for IN cord-010027-r0tl01kq 1707 10 hBCATc hbcatc CD cord-010027-r0tl01kq 1707 11 , , , cord-010027-r0tl01kq 1707 12 hBCATm hbcatm NN cord-010027-r0tl01kq 1707 13 and and CC cord-010027-r0tl01kq 1707 14 BCKDC BCKDC NNP cord-010027-r0tl01kq 1707 15 expression expression NN cord-010027-r0tl01kq 1707 16 using use VBG cord-010027-r0tl01kq 1707 17 western western JJ cord-010027-r0tl01kq 1707 18 blotting blotting NN cord-010027-r0tl01kq 1707 19 and and CC cord-010027-r0tl01kq 1707 20 immunohistochemistry immunohistochemistry NN cord-010027-r0tl01kq 1707 21 . . . cord-010027-r0tl01kq 1708 1 DNA DNA NNP cord-010027-r0tl01kq 1708 2 was be VBD cord-010027-r0tl01kq 1708 3 extracted extract VBN cord-010027-r0tl01kq 1708 4 from from IN cord-010027-r0tl01kq 1708 5 fresh fresh JJ cord-010027-r0tl01kq 1708 6 frozen frozen JJ cord-010027-r0tl01kq 1708 7 tissue tissue NN cord-010027-r0tl01kq 1708 8 . . . cord-010027-r0tl01kq 1709 1 Sanger Sanger NNP cord-010027-r0tl01kq 1709 2 sequencing sequencing NN cord-010027-r0tl01kq 1709 3 of of IN cord-010027-r0tl01kq 1709 4 the the DT cord-010027-r0tl01kq 1709 5 p. p. NN cord-010027-r0tl01kq 1710 1 Arg132 Arg132 NFP cord-010027-r0tl01kq 1710 2 region region NN cord-010027-r0tl01kq 1710 3 of of IN cord-010027-r0tl01kq 1710 4 IDH1 IDH1 NNP cord-010027-r0tl01kq 1710 5 and and CC cord-010027-r0tl01kq 1710 6 p. p. NN cord-010027-r0tl01kq 1711 1 Arg172 arg172 DT cord-010027-r0tl01kq 1711 2 region region NN cord-010027-r0tl01kq 1711 3 of of IN cord-010027-r0tl01kq 1711 4 IDH2 IDH2 NNP cord-010027-r0tl01kq 1711 5 was be VBD cord-010027-r0tl01kq 1711 6 undertaken undertake VBN cord-010027-r0tl01kq 1711 7 using use VBG cord-010027-r0tl01kq 1711 8 a a DT cord-010027-r0tl01kq 1711 9 3730 3730 CD cord-010027-r0tl01kq 1711 10 DNA dna NN cord-010027-r0tl01kq 1711 11 analyser analyser NN cord-010027-r0tl01kq 1711 12 ( ( -LRB- cord-010027-r0tl01kq 1711 13 Applied Applied NNP cord-010027-r0tl01kq 1711 14 Bio Bio NNP cord-010027-r0tl01kq 1711 15 - - HYPH cord-010027-r0tl01kq 1711 16 Systems Systems NNP cord-010027-r0tl01kq 1711 17 ) ) -RRB- cord-010027-r0tl01kq 1711 18 . . . cord-010027-r0tl01kq 1712 1 SUMMARY summary NN cord-010027-r0tl01kq 1712 2 : : : cord-010027-r0tl01kq 1713 1 In in IN cord-010027-r0tl01kq 1713 2 IDH IDH NNP cord-010027-r0tl01kq 1713 3 WT WT NNP cord-010027-r0tl01kq 1713 4 tumours tumour NNS cord-010027-r0tl01kq 1713 5 , , , cord-010027-r0tl01kq 1713 6 like like IN cord-010027-r0tl01kq 1713 7 hBCATc hbcatc CD cord-010027-r0tl01kq 1713 8 ( ( -LRB- cord-010027-r0tl01kq 1713 9 p=0.007 p=0.007 NNP cord-010027-r0tl01kq 1713 10 ) ) -RRB- cord-010027-r0tl01kq 1713 11 , , , cord-010027-r0tl01kq 1713 12 the the DT cord-010027-r0tl01kq 1713 13 expression expression NN cord-010027-r0tl01kq 1713 14 of of IN cord-010027-r0tl01kq 1713 15 the the DT cord-010027-r0tl01kq 1713 16 mitochondrial mitochondrial JJ cord-010027-r0tl01kq 1713 17 isoform isoform NN cord-010027-r0tl01kq 1713 18 ( ( -LRB- cord-010027-r0tl01kq 1713 19 hBCATm hbcatm NN cord-010027-r0tl01kq 1713 20 ) ) -RRB- cord-010027-r0tl01kq 1713 21 is be VBZ cord-010027-r0tl01kq 1713 22 significantly significantly RB cord-010027-r0tl01kq 1713 23 ( ( -LRB- cord-010027-r0tl01kq 1713 24 p=0.036 p=0.036 JJ cord-010027-r0tl01kq 1713 25 ) ) -RRB- cord-010027-r0tl01kq 1713 26 expressed express VBD cord-010027-r0tl01kq 1713 27 relative relative NN cord-010027-r0tl01kq 1713 28 to to IN cord-010027-r0tl01kq 1713 29 IDH IDH NNP cord-010027-r0tl01kq 1713 30 mutant mutant JJ cord-010027-r0tl01kq 1713 31 gliomas glioma NNS cord-010027-r0tl01kq 1713 32 . . . cord-010027-r0tl01kq 1714 1 hBCATm hbcatm RB cord-010027-r0tl01kq 1714 2 additionally additionally RB cord-010027-r0tl01kq 1714 3 shows show VBZ cord-010027-r0tl01kq 1714 4 a a DT cord-010027-r0tl01kq 1714 5 more more RBR cord-010027-r0tl01kq 1714 6 significant significant JJ cord-010027-r0tl01kq 1714 7 correlation correlation NN cord-010027-r0tl01kq 1714 8 with with IN cord-010027-r0tl01kq 1714 9 patient patient JJ cord-010027-r0tl01kq 1714 10 survival survival NN cord-010027-r0tl01kq 1714 11 than than IN cord-010027-r0tl01kq 1714 12 hBCATc hbcatc CD cord-010027-r0tl01kq 1714 13 on on IN cord-010027-r0tl01kq 1714 14 Kaplan Kaplan NNP cord-010027-r0tl01kq 1714 15 - - HYPH cord-010027-r0tl01kq 1714 16 Meier Meier NNP cord-010027-r0tl01kq 1714 17 analysis analysis NN cord-010027-r0tl01kq 1714 18 . . . cord-010027-r0tl01kq 1715 1 In in IN cord-010027-r0tl01kq 1715 2 IDH IDH NNP cord-010027-r0tl01kq 1715 3 WT WT NNP cord-010027-r0tl01kq 1715 4 tumours tumour NNS cord-010027-r0tl01kq 1715 5 , , , cord-010027-r0tl01kq 1715 6 low low JJ cord-010027-r0tl01kq 1715 7 hBCATm hbcatm DT cord-010027-r0tl01kq 1715 8 expression expression NN cord-010027-r0tl01kq 1715 9 is be VBZ cord-010027-r0tl01kq 1715 10 a a DT cord-010027-r0tl01kq 1715 11 positive positive JJ cord-010027-r0tl01kq 1715 12 prognostic prognostic JJ cord-010027-r0tl01kq 1715 13 factor factor NN cord-010027-r0tl01kq 1715 14 ( ( -LRB- cord-010027-r0tl01kq 1715 15 p p NN cord-010027-r0tl01kq 1715 16 = = SYM cord-010027-r0tl01kq 1715 17 0.003 0.003 CD cord-010027-r0tl01kq 1715 18 ) ) -RRB- cord-010027-r0tl01kq 1715 19 . . . cord-010027-r0tl01kq 1716 1 hBCATm hbcatm DT cord-010027-r0tl01kq 1716 2 expression expression NN cord-010027-r0tl01kq 1716 3 additionally additionally RB cord-010027-r0tl01kq 1716 4 correlated correlate VBD cord-010027-r0tl01kq 1716 5 with with IN cord-010027-r0tl01kq 1716 6 WHO WHO NNP cord-010027-r0tl01kq 1716 7 grade grade NN cord-010027-r0tl01kq 1716 8 . . . cord-010027-r0tl01kq 1717 1 Although although IN cord-010027-r0tl01kq 1717 2 previous previous JJ cord-010027-r0tl01kq 1717 3 reports report NNS cord-010027-r0tl01kq 1717 4 indicate indicate VBP cord-010027-r0tl01kq 1717 5 that that IN cord-010027-r0tl01kq 1717 6 increased increase VBN cord-010027-r0tl01kq 1717 7 hBCATc hbcatc NN cord-010027-r0tl01kq 1717 8 occurs occur VBZ cord-010027-r0tl01kq 1717 9 exclusively exclusively RB cord-010027-r0tl01kq 1717 10 in in IN cord-010027-r0tl01kq 1717 11 IDH IDH NNP cord-010027-r0tl01kq 1717 12 - - HYPH cord-010027-r0tl01kq 1717 13 WT WT NNP cord-010027-r0tl01kq 1717 14 tumours tumour NNS cord-010027-r0tl01kq 1717 15 , , , cord-010027-r0tl01kq 1717 16 our -PRON- PRP$ cord-010027-r0tl01kq 1717 17 studies study NNS cord-010027-r0tl01kq 1717 18 demonstrate demonstrate VBP cord-010027-r0tl01kq 1717 19 that that IN cord-010027-r0tl01kq 1717 20 30 30 CD cord-010027-r0tl01kq 1717 21 % % NN cord-010027-r0tl01kq 1717 22 of of IN cord-010027-r0tl01kq 1717 23 IDH IDH NNP cord-010027-r0tl01kq 1717 24 mutant mutant JJ cord-010027-r0tl01kq 1717 25 tumours tumour NNS cord-010027-r0tl01kq 1717 26 express express VBP cord-010027-r0tl01kq 1717 27 comparable comparable JJ cord-010027-r0tl01kq 1717 28 levels level NNS cord-010027-r0tl01kq 1717 29 of of IN cord-010027-r0tl01kq 1717 30 hBCATc hbcatc CD cord-010027-r0tl01kq 1717 31 . . . cord-010027-r0tl01kq 1718 1 Although although IN cord-010027-r0tl01kq 1718 2 hBCATc hbcatc CD cord-010027-r0tl01kq 1718 3 alone alone RB cord-010027-r0tl01kq 1718 4 has have VBZ cord-010027-r0tl01kq 1718 5 been be VBN cord-010027-r0tl01kq 1718 6 suggested suggest VBN cord-010027-r0tl01kq 1718 7 as as IN cord-010027-r0tl01kq 1718 8 a a DT cord-010027-r0tl01kq 1718 9 putative putative JJ cord-010027-r0tl01kq 1718 10 therapeutic therapeutic JJ cord-010027-r0tl01kq 1718 11 target target NN cord-010027-r0tl01kq 1718 12 , , , cord-010027-r0tl01kq 1718 13 it -PRON- PRP cord-010027-r0tl01kq 1718 14 is be VBZ cord-010027-r0tl01kq 1718 15 important important JJ cord-010027-r0tl01kq 1718 16 to to TO cord-010027-r0tl01kq 1718 17 evaluate evaluate VB cord-010027-r0tl01kq 1718 18 the the DT cord-010027-r0tl01kq 1718 19 expression expression NN cord-010027-r0tl01kq 1718 20 of of IN cord-010027-r0tl01kq 1718 21 hBCATm hbcatm DT cord-010027-r0tl01kq 1718 22 in in IN cord-010027-r0tl01kq 1718 23 glioblastomas glioblastomas NNP cord-010027-r0tl01kq 1718 24 as as IN cord-010027-r0tl01kq 1718 25 its -PRON- PRP$ cord-010027-r0tl01kq 1718 26 expression expression NN cord-010027-r0tl01kq 1718 27 may may MD cord-010027-r0tl01kq 1718 28 impact impact VB cord-010027-r0tl01kq 1718 29 the the DT cord-010027-r0tl01kq 1718 30 efficacy efficacy NN cord-010027-r0tl01kq 1718 31 of of IN cord-010027-r0tl01kq 1718 32 new new JJ cord-010027-r0tl01kq 1718 33 treatments treatment NNS cord-010027-r0tl01kq 1718 34 targeting target VBG cord-010027-r0tl01kq 1718 35 hBCATc hbcatc CD cord-010027-r0tl01kq 1718 36 . . . cord-010027-r0tl01kq 1719 1 Conclusions conclusion NNS cord-010027-r0tl01kq 1719 2 : : : cord-010027-r0tl01kq 1720 1 IDH IDH NNP cord-010027-r0tl01kq 1720 2 WT WT NNP cord-010027-r0tl01kq 1720 3 high high JJ cord-010027-r0tl01kq 1720 4 grade grade NN cord-010027-r0tl01kq 1720 5 gliomas glioma NNS cord-010027-r0tl01kq 1720 6 traditionally traditionally RB cord-010027-r0tl01kq 1720 7 have have VBP cord-010027-r0tl01kq 1720 8 a a DT cord-010027-r0tl01kq 1720 9 poor poor JJ cord-010027-r0tl01kq 1720 10 prognosis prognosis NN cord-010027-r0tl01kq 1720 11 . . . cord-010027-r0tl01kq 1721 1 However however RB cord-010027-r0tl01kq 1721 2 we -PRON- PRP cord-010027-r0tl01kq 1721 3 demonstrate demonstrate VBP cord-010027-r0tl01kq 1721 4 for for IN cord-010027-r0tl01kq 1721 5 the the DT cord-010027-r0tl01kq 1721 6 first first JJ cord-010027-r0tl01kq 1721 7 time time NN cord-010027-r0tl01kq 1721 8 that that WDT cord-010027-r0tl01kq 1721 9 relatively relatively RB cord-010027-r0tl01kq 1721 10 low low JJ cord-010027-r0tl01kq 1721 11 hBCATm hbcatm PRP cord-010027-r0tl01kq 1721 12 may may MD cord-010027-r0tl01kq 1721 13 select select VB cord-010027-r0tl01kq 1721 14 for for IN cord-010027-r0tl01kq 1721 15 a a DT cord-010027-r0tl01kq 1721 16 better well RBR cord-010027-r0tl01kq 1721 17 performing perform VBG cord-010027-r0tl01kq 1721 18 clinical clinical JJ cord-010027-r0tl01kq 1721 19 cohort cohort NN cord-010027-r0tl01kq 1721 20 and and CC cord-010027-r0tl01kq 1721 21 may may MD cord-010027-r0tl01kq 1721 22 be be VB cord-010027-r0tl01kq 1721 23 a a DT cord-010027-r0tl01kq 1721 24 possible possible JJ cord-010027-r0tl01kq 1721 25 candidate candidate NN cord-010027-r0tl01kq 1721 26 target target NN cord-010027-r0tl01kq 1721 27 for for IN cord-010027-r0tl01kq 1721 28 drug drug NN cord-010027-r0tl01kq 1721 29 therapy therapy NN cord-010027-r0tl01kq 1721 30 . . . cord-010027-r0tl01kq 1722 1 A a DT cord-010027-r0tl01kq 1722 2 38 38 CD cord-010027-r0tl01kq 1722 3 year year NN cord-010027-r0tl01kq 1722 4 old old JJ cord-010027-r0tl01kq 1722 5 female female NN cord-010027-r0tl01kq 1722 6 presented present VBN cord-010027-r0tl01kq 1722 7 with with IN cord-010027-r0tl01kq 1722 8 an an DT cord-010027-r0tl01kq 1722 9 occipital occipital JJ cord-010027-r0tl01kq 1722 10 mass mass NN cord-010027-r0tl01kq 1722 11 , , , cord-010027-r0tl01kq 1722 12 presumed presume VBN cord-010027-r0tl01kq 1722 13 to to TO cord-010027-r0tl01kq 1722 14 be be VB cord-010027-r0tl01kq 1722 15 a a DT cord-010027-r0tl01kq 1722 16 lymph lymph NN cord-010027-r0tl01kq 1722 17 node node NN cord-010027-r0tl01kq 1722 18 and and CC cord-010027-r0tl01kq 1722 19 underwent undergo VBD cord-010027-r0tl01kq 1722 20 fine fine JJ cord-010027-r0tl01kq 1722 21 needle needle NN cord-010027-r0tl01kq 1722 22 aspiration aspiration NN cord-010027-r0tl01kq 1722 23 of of IN cord-010027-r0tl01kq 1722 24 the the DT cord-010027-r0tl01kq 1722 25 lesion lesion NN cord-010027-r0tl01kq 1722 26 . . . cord-010027-r0tl01kq 1723 1 FNA FNA NNP cord-010027-r0tl01kq 1723 2 yielded yield VBD cord-010027-r0tl01kq 1723 3 two two CD cord-010027-r0tl01kq 1723 4 air air NN cord-010027-r0tl01kq 1723 5 dried dry VBN cord-010027-r0tl01kq 1723 6 slides slide NNS cord-010027-r0tl01kq 1723 7 , , , cord-010027-r0tl01kq 1723 8 upon upon IN cord-010027-r0tl01kq 1723 9 which which WDT cord-010027-r0tl01kq 1723 10 a a DT cord-010027-r0tl01kq 1723 11 diagnosis diagnosis NN cord-010027-r0tl01kq 1723 12 of of IN cord-010027-r0tl01kq 1723 13 mesenchymal mesenchymal JJ cord-010027-r0tl01kq 1723 14 neoplasm neoplasm NN cord-010027-r0tl01kq 1723 15 was be VBD cord-010027-r0tl01kq 1723 16 made make VBN cord-010027-r0tl01kq 1723 17 . . . cord-010027-r0tl01kq 1724 1 The the DT cord-010027-r0tl01kq 1724 2 patient patient NN cord-010027-r0tl01kq 1724 3 underwent undergo VBD cord-010027-r0tl01kq 1724 4 a a DT cord-010027-r0tl01kq 1724 5 subsequent subsequent JJ cord-010027-r0tl01kq 1724 6 incisional incisional NNP cord-010027-r0tl01kq 1724 7 biopsy biopsy NN cord-010027-r0tl01kq 1724 8 allowing allow VBG cord-010027-r0tl01kq 1724 9 a a DT cord-010027-r0tl01kq 1724 10 formal formal JJ cord-010027-r0tl01kq 1724 11 histological histological JJ cord-010027-r0tl01kq 1724 12 diagnosis diagnosis NN cord-010027-r0tl01kq 1724 13 of of IN cord-010027-r0tl01kq 1724 14 myxoinflammatory myxoinflammatory NNP cord-010027-r0tl01kq 1724 15 fibroblastic fibroblastic JJ cord-010027-r0tl01kq 1724 16 sarcoma sarcoma NN cord-010027-r0tl01kq 1724 17 to to TO cord-010027-r0tl01kq 1724 18 be be VB cord-010027-r0tl01kq 1724 19 made make VBN cord-010027-r0tl01kq 1724 20 . . . cord-010027-r0tl01kq 1725 1 Myxoinflammatory myxoinflammatory JJ cord-010027-r0tl01kq 1725 2 fibroblastic fibroblastic JJ cord-010027-r0tl01kq 1725 3 sarcoma sarcoma NN cord-010027-r0tl01kq 1725 4 is be VBZ cord-010027-r0tl01kq 1725 5 a a DT cord-010027-r0tl01kq 1725 6 low low JJ cord-010027-r0tl01kq 1725 7 - - HYPH cord-010027-r0tl01kq 1725 8 grade grade NN cord-010027-r0tl01kq 1725 9 neoplasm neoplasm NN cord-010027-r0tl01kq 1725 10 usually usually RB cord-010027-r0tl01kq 1725 11 occuring occur VBG cord-010027-r0tl01kq 1725 12 on on IN cord-010027-r0tl01kq 1725 13 the the DT cord-010027-r0tl01kq 1725 14 distal distal JJ cord-010027-r0tl01kq 1725 15 extremities extremity NNS cord-010027-r0tl01kq 1725 16 and and CC cord-010027-r0tl01kq 1725 17 only only RB cord-010027-r0tl01kq 1725 18 rarely rarely RB cord-010027-r0tl01kq 1725 19 presents present VBZ cord-010027-r0tl01kq 1725 20 as as IN cord-010027-r0tl01kq 1725 21 a a DT cord-010027-r0tl01kq 1725 22 head head NN cord-010027-r0tl01kq 1725 23 and and CC cord-010027-r0tl01kq 1725 24 neck neck NN cord-010027-r0tl01kq 1725 25 neoplasm neoplasm NN cord-010027-r0tl01kq 1725 26 . . . cord-010027-r0tl01kq 1726 1 FNA FNA NNP cord-010027-r0tl01kq 1726 2 is be VBZ cord-010027-r0tl01kq 1726 3 a a DT cord-010027-r0tl01kq 1726 4 useful useful JJ cord-010027-r0tl01kq 1726 5 tool tool NN cord-010027-r0tl01kq 1726 6 in in IN cord-010027-r0tl01kq 1726 7 the the DT cord-010027-r0tl01kq 1726 8 diagnosis diagnosis NN cord-010027-r0tl01kq 1726 9 and and CC cord-010027-r0tl01kq 1726 10 subsequent subsequent JJ cord-010027-r0tl01kq 1726 11 management management NN cord-010027-r0tl01kq 1726 12 of of IN cord-010027-r0tl01kq 1726 13 head head NN cord-010027-r0tl01kq 1726 14 and and CC cord-010027-r0tl01kq 1726 15 neck neck NN cord-010027-r0tl01kq 1726 16 neoplasia neoplasia NN cord-010027-r0tl01kq 1726 17 and and CC cord-010027-r0tl01kq 1726 18 we -PRON- PRP cord-010027-r0tl01kq 1726 19 describe describe VBP cord-010027-r0tl01kq 1726 20 here here RB cord-010027-r0tl01kq 1726 21 the the DT cord-010027-r0tl01kq 1726 22 cytological cytological JJ cord-010027-r0tl01kq 1726 23 features feature NNS cord-010027-r0tl01kq 1726 24 and and CC cord-010027-r0tl01kq 1726 25 subsequent subsequent JJ cord-010027-r0tl01kq 1726 26 histological histological JJ cord-010027-r0tl01kq 1726 27 diagnosis diagnosis NN cord-010027-r0tl01kq 1726 28 of of IN cord-010027-r0tl01kq 1726 29 myxoinflammatory myxoinflammatory NNP cord-010027-r0tl01kq 1726 30 fibroblastic fibroblastic JJ cord-010027-r0tl01kq 1726 31 sarcoma sarcoma NN cord-010027-r0tl01kq 1726 32 occuring occur VBG cord-010027-r0tl01kq 1726 33 in in IN cord-010027-r0tl01kq 1726 34 the the DT cord-010027-r0tl01kq 1726 35 occipital occipital JJ cord-010027-r0tl01kq 1726 36 scalp scalp NN cord-010027-r0tl01kq 1726 37 . . . cord-010027-r0tl01kq 1727 1 Objective objective NN cord-010027-r0tl01kq 1727 2 : : : cord-010027-r0tl01kq 1727 3 Presentation presentation NN cord-010027-r0tl01kq 1727 4 of of IN cord-010027-r0tl01kq 1727 5 giant giant JJ cord-010027-r0tl01kq 1727 6 cell cell NN cord-010027-r0tl01kq 1727 7 fibroblastoma fibroblastoma NN cord-010027-r0tl01kq 1727 8 ( ( -LRB- cord-010027-r0tl01kq 1727 9 GCF GCF NNP cord-010027-r0tl01kq 1727 10 ) ) -RRB- cord-010027-r0tl01kq 1727 11 . . . cord-010027-r0tl01kq 1728 1 Because because IN cord-010027-r0tl01kq 1728 2 of of IN cord-010027-r0tl01kq 1728 3 it -PRON- PRP cord-010027-r0tl01kq 1728 4 has have VBZ cord-010027-r0tl01kq 1728 5 a a DT cord-010027-r0tl01kq 1728 6 dilemma dilemma NN cord-010027-r0tl01kq 1728 7 of of IN cord-010027-r0tl01kq 1728 8 microscopic microscopic JJ cord-010027-r0tl01kq 1728 9 appearances appearance NNS cord-010027-r0tl01kq 1728 10 ; ; : cord-010027-r0tl01kq 1728 11 it -PRON- PRP cord-010027-r0tl01kq 1728 12 is be VBZ cord-010027-r0tl01kq 1728 13 mandatory mandatory JJ cord-010027-r0tl01kq 1728 14 to to IN cord-010027-r0tl01kq 1728 15 differentiating differentiate VBG cord-010027-r0tl01kq 1728 16 it -PRON- PRP cord-010027-r0tl01kq 1728 17 from from IN cord-010027-r0tl01kq 1728 18 atypical atypical JJ cord-010027-r0tl01kq 1728 19 dermatofibroma dermatofibroma NNP cord-010027-r0tl01kq 1728 20 ( ( -LRB- cord-010027-r0tl01kq 1728 21 ADF ADF NNP cord-010027-r0tl01kq 1728 22 ) ) -RRB- cord-010027-r0tl01kq 1728 23 , , , cord-010027-r0tl01kq 1728 24 fibrous fibrous JJ cord-010027-r0tl01kq 1728 25 hamartoma hamartoma NN cord-010027-r0tl01kq 1728 26 of of IN cord-010027-r0tl01kq 1728 27 infancy infancy NN cord-010027-r0tl01kq 1728 28 ( ( -LRB- cord-010027-r0tl01kq 1728 29 FHI FHI NNP cord-010027-r0tl01kq 1728 30 ) ) -RRB- cord-010027-r0tl01kq 1728 31 and and CC cord-010027-r0tl01kq 1728 32 vascular vascular JJ cord-010027-r0tl01kq 1728 33 lesions lesion NNS cord-010027-r0tl01kq 1728 34 . . . cord-010027-r0tl01kq 1729 1 Methods method NNS cord-010027-r0tl01kq 1729 2 : : : cord-010027-r0tl01kq 1729 3 Eighteen eighteen CD cord-010027-r0tl01kq 1729 4 month month NN cord-010027-r0tl01kq 1729 5 - - HYPH cord-010027-r0tl01kq 1729 6 male male JJ cord-010027-r0tl01kq 1729 7 Egyptian egyptian JJ cord-010027-r0tl01kq 1729 8 child child NN cord-010027-r0tl01kq 1729 9 presented present VBN cord-010027-r0tl01kq 1729 10 with with IN cord-010027-r0tl01kq 1729 11 painless painless JJ cord-010027-r0tl01kq 1729 12 slowly slowly RB cord-010027-r0tl01kq 1729 13 expanding expand VBG cord-010027-r0tl01kq 1729 14 subcutaneous subcutaneous JJ cord-010027-r0tl01kq 1729 15 back back JJ cord-010027-r0tl01kq 1729 16 swelling swell VBG cord-010027-r0tl01kq 1729 17 at at IN cord-010027-r0tl01kq 1729 18 the the DT cord-010027-r0tl01kq 1729 19 left left JJ cord-010027-r0tl01kq 1729 20 scapular scapular JJ cord-010027-r0tl01kq 1729 21 area area NN cord-010027-r0tl01kq 1729 22 . . . cord-010027-r0tl01kq 1730 1 Results result NNS cord-010027-r0tl01kq 1730 2 : : : cord-010027-r0tl01kq 1731 1 Histologically histologically RB cord-010027-r0tl01kq 1731 2 , , , cord-010027-r0tl01kq 1731 3 the the DT cord-010027-r0tl01kq 1731 4 lesion lesion NN cord-010027-r0tl01kq 1731 5 is be VBZ cord-010027-r0tl01kq 1731 6 poorly poorly RB cord-010027-r0tl01kq 1731 7 circumscribed circumscribed JJ cord-010027-r0tl01kq 1731 8 and and CC cord-010027-r0tl01kq 1731 9 range range VB cord-010027-r0tl01kq 1731 10 from from IN cord-010027-r0tl01kq 1731 11 cellular cellular JJ cord-010027-r0tl01kq 1731 12 to to IN cord-010027-r0tl01kq 1731 13 myxoid myxoid VB cord-010027-r0tl01kq 1731 14 in in IN cord-010027-r0tl01kq 1731 15 a a DT cord-010027-r0tl01kq 1731 16 dense dense JJ cord-010027-r0tl01kq 1731 17 to to IN cord-010027-r0tl01kq 1731 18 loose loose JJ cord-010027-r0tl01kq 1731 19 collagenous collagenous JJ cord-010027-r0tl01kq 1731 20 stroma stroma NN cord-010027-r0tl01kq 1731 21 . . . cord-010027-r0tl01kq 1732 1 The the DT cord-010027-r0tl01kq 1732 2 tumours tumour NNS cord-010027-r0tl01kq 1732 3 composed compose VBN cord-010027-r0tl01kq 1732 4 of of IN cord-010027-r0tl01kq 1732 5 mixture mixture NN cord-010027-r0tl01kq 1732 6 of of IN cord-010027-r0tl01kq 1732 7 spindle spindle NN cord-010027-r0tl01kq 1732 8 shaped shape VBN cord-010027-r0tl01kq 1732 9 or or CC cord-010027-r0tl01kq 1732 10 stellate stellate JJ cord-010027-r0tl01kq 1732 11 cells cell NNS cord-010027-r0tl01kq 1732 12 admixed admix VBN cord-010027-r0tl01kq 1732 13 with with IN cord-010027-r0tl01kq 1732 14 multinucleated multinucleated JJ cord-010027-r0tl01kq 1732 15 giant giant JJ cord-010027-r0tl01kq 1732 16 cells cell NNS cord-010027-r0tl01kq 1732 17 with with IN cord-010027-r0tl01kq 1732 18 occasional occasional JJ cord-010027-r0tl01kq 1732 19 pleomorphism pleomorphism NN cord-010027-r0tl01kq 1732 20 and and CC cord-010027-r0tl01kq 1732 21 very very RB cord-010027-r0tl01kq 1732 22 low low JJ cord-010027-r0tl01kq 1732 23 mitotic mitotic JJ cord-010027-r0tl01kq 1732 24 index index NN cord-010027-r0tl01kq 1732 25 ( ( -LRB- cord-010027-r0tl01kq 1732 26 < < NNP cord-010027-r0tl01kq 1732 27 1 1 CD cord-010027-r0tl01kq 1732 28 per per IN cord-010027-r0tl01kq 1732 29 50 50 CD cord-010027-r0tl01kq 1732 30 high high JJ cord-010027-r0tl01kq 1732 31 - - HYPH cord-010027-r0tl01kq 1732 32 power power NN cord-010027-r0tl01kq 1732 33 fields field NNS cord-010027-r0tl01kq 1732 34 ) ) -RRB- cord-010027-r0tl01kq 1732 35 . . . cord-010027-r0tl01kq 1733 1 These these DT cord-010027-r0tl01kq 1733 2 cells cell NNS cord-010027-r0tl01kq 1733 3 infiltrate infiltrate VBP cord-010027-r0tl01kq 1733 4 around around IN cord-010027-r0tl01kq 1733 5 adnexal adnexal NN cord-010027-r0tl01kq 1733 6 structures structure NNS cord-010027-r0tl01kq 1733 7 and and CC cord-010027-r0tl01kq 1733 8 through through IN cord-010027-r0tl01kq 1733 9 subcutaneous subcutaneous JJ cord-010027-r0tl01kq 1733 10 fat fat NN cord-010027-r0tl01kq 1733 11 . . . cord-010027-r0tl01kq 1734 1 A a DT cord-010027-r0tl01kq 1734 2 distinctive distinctive JJ cord-010027-r0tl01kq 1734 3 finding finding NN cord-010027-r0tl01kq 1734 4 is be VBZ cord-010027-r0tl01kq 1734 5 cracking crack VBG cord-010027-r0tl01kq 1734 6 artifact artifact NN cord-010027-r0tl01kq 1734 7 of of IN cord-010027-r0tl01kq 1734 8 the the DT cord-010027-r0tl01kq 1734 9 stroma stroma NN cord-010027-r0tl01kq 1734 10 simulating simulate VBG cord-010027-r0tl01kq 1734 11 angiectoid angiectoid NNP cord-010027-r0tl01kq 1734 12 spaces space NNS cord-010027-r0tl01kq 1734 13 . . . cord-010027-r0tl01kq 1735 1 These these DT cord-010027-r0tl01kq 1735 2 pseudovascular pseudovascular JJ cord-010027-r0tl01kq 1735 3 spaces space NNS cord-010027-r0tl01kq 1735 4 are be VBP cord-010027-r0tl01kq 1735 5 lacking lack VBG cord-010027-r0tl01kq 1735 6 a a DT cord-010027-r0tl01kq 1735 7 true true JJ cord-010027-r0tl01kq 1735 8 endothelial endothelial JJ cord-010027-r0tl01kq 1735 9 lining lining NN cord-010027-r0tl01kq 1735 10 and and CC cord-010027-r0tl01kq 1735 11 lined line VBN cord-010027-r0tl01kq 1735 12 by by IN cord-010027-r0tl01kq 1735 13 discontinuous discontinuous JJ cord-010027-r0tl01kq 1735 14 layer layer NN cord-010027-r0tl01kq 1735 15 of of IN cord-010027-r0tl01kq 1735 16 enlarged enlarged JJ cord-010027-r0tl01kq 1735 17 multinucleated multinucleated JJ cord-010027-r0tl01kq 1735 18 giant giant JJ cord-010027-r0tl01kq 1735 19 cells cell NNS cord-010027-r0tl01kq 1735 20 . . . cord-010027-r0tl01kq 1736 1 Immunostains Immunostains NNP cord-010027-r0tl01kq 1736 2 , , , cord-010027-r0tl01kq 1736 3 including include VBG cord-010027-r0tl01kq 1736 4 factor factor NN cord-010027-r0tl01kq 1736 5 VIII VIII NNP cord-010027-r0tl01kq 1736 6 , , , cord-010027-r0tl01kq 1736 7 CD31 CD31 NNP cord-010027-r0tl01kq 1736 8 , , , cord-010027-r0tl01kq 1736 9 CD1a CD1a NNP cord-010027-r0tl01kq 1736 10 , , , cord-010027-r0tl01kq 1736 11 SMA SMA NNP cord-010027-r0tl01kq 1736 12 , , , cord-010027-r0tl01kq 1736 13 S100 S100 NNP cord-010027-r0tl01kq 1736 14 and and CC cord-010027-r0tl01kq 1736 15 CD68 CD68 NNP cord-010027-r0tl01kq 1736 16 were be VBD cord-010027-r0tl01kq 1736 17 negative negative JJ cord-010027-r0tl01kq 1736 18 . . . cord-010027-r0tl01kq 1737 1 Ki Ki NNP cord-010027-r0tl01kq 1737 2 67 67 CD cord-010027-r0tl01kq 1737 3 labeling labeling NN cord-010027-r0tl01kq 1737 4 index index NN cord-010027-r0tl01kq 1737 5 is be VBZ cord-010027-r0tl01kq 1737 6 very very RB cord-010027-r0tl01kq 1737 7 low low JJ cord-010027-r0tl01kq 1737 8 . . . cord-010027-r0tl01kq 1738 1 All all PDT cord-010027-r0tl01kq 1738 2 the the DT cord-010027-r0tl01kq 1738 3 cellular cellular JJ cord-010027-r0tl01kq 1738 4 components component NNS cord-010027-r0tl01kq 1738 5 show show VBP cord-010027-r0tl01kq 1738 6 positive positive JJ cord-010027-r0tl01kq 1738 7 immunoreactivity immunoreactivity NN cord-010027-r0tl01kq 1738 8 for for IN cord-010027-r0tl01kq 1738 9 CD34 CD34 NNP cord-010027-r0tl01kq 1738 10 . . . cord-010027-r0tl01kq 1739 1 Conclusions conclusion NNS cord-010027-r0tl01kq 1739 2 : : : cord-010027-r0tl01kq 1740 1 First first JJ cord-010027-r0tl01kq 1740 2 case case NN cord-010027-r0tl01kq 1740 3 of of IN cord-010027-r0tl01kq 1740 4 GCF GCF NNP cord-010027-r0tl01kq 1740 5 reported report VBN cord-010027-r0tl01kq 1740 6 in in IN cord-010027-r0tl01kq 1740 7 Egypt Egypt NNP cord-010027-r0tl01kq 1740 8 . . . cord-010027-r0tl01kq 1741 1 We -PRON- PRP cord-010027-r0tl01kq 1741 2 recommend recommend VBP cord-010027-r0tl01kq 1741 3 a a DT cord-010027-r0tl01kq 1741 4 wide wide JJ cord-010027-r0tl01kq 1741 5 scaled scale VBN cord-010027-r0tl01kq 1741 6 study study NN cord-010027-r0tl01kq 1741 7 to to TO cord-010027-r0tl01kq 1741 8 categorize categorize VB cord-010027-r0tl01kq 1741 9 this this DT cord-010027-r0tl01kq 1741 10 tumour tumour NN cord-010027-r0tl01kq 1741 11 with with IN cord-010027-r0tl01kq 1741 12 molecularly molecularly RB cord-010027-r0tl01kq 1741 13 similar similar JJ cord-010027-r0tl01kq 1741 14 lesions lesion NNS cord-010027-r0tl01kq 1741 15 . . . cord-010027-r0tl01kq 1742 1 The the DT cord-010027-r0tl01kq 1742 2 Royal Royal NNP cord-010027-r0tl01kq 1742 3 County County NNP cord-010027-r0tl01kq 1742 4 Sussex Sussex NNP cord-010027-r0tl01kq 1742 5 Hospital Hospital NNP cord-010027-r0tl01kq 1742 6 , , , cord-010027-r0tl01kq 1742 7 Brighton Brighton NNP cord-010027-r0tl01kq 1742 8 , , , cord-010027-r0tl01kq 1742 9 UK UK NNP cord-010027-r0tl01kq 1742 10 A A NNP cord-010027-r0tl01kq 1742 11 60 60 CD cord-010027-r0tl01kq 1742 12 year year NN cord-010027-r0tl01kq 1742 13 old old JJ cord-010027-r0tl01kq 1742 14 man man NN cord-010027-r0tl01kq 1742 15 being be VBG cord-010027-r0tl01kq 1742 16 investigated investigate VBN cord-010027-r0tl01kq 1742 17 for for IN cord-010027-r0tl01kq 1742 18 obstructive obstructive JJ cord-010027-r0tl01kq 1742 19 hydronephrosis hydronephrosis NN cord-010027-r0tl01kq 1742 20 was be VBD cord-010027-r0tl01kq 1742 21 incidentally incidentally RB cord-010027-r0tl01kq 1742 22 found find VBN cord-010027-r0tl01kq 1742 23 to to TO cord-010027-r0tl01kq 1742 24 have have VB cord-010027-r0tl01kq 1742 25 a a DT cord-010027-r0tl01kq 1742 26 3.2 3.2 CD cord-010027-r0tl01kq 1742 27 cm cm NN cord-010027-r0tl01kq 1742 28 splenic splenic JJ cord-010027-r0tl01kq 1742 29 mass mass NN cord-010027-r0tl01kq 1742 30 on on IN cord-010027-r0tl01kq 1742 31 computed compute VBN cord-010027-r0tl01kq 1742 32 tomography tomography NN cord-010027-r0tl01kq 1742 33 ( ( -LRB- cord-010027-r0tl01kq 1742 34 CT CT NNP cord-010027-r0tl01kq 1742 35 ) ) -RRB- cord-010027-r0tl01kq 1742 36 . . . cord-010027-r0tl01kq 1743 1 No no DT cord-010027-r0tl01kq 1743 2 lymphadenopathy lymphadenopathy NN cord-010027-r0tl01kq 1743 3 was be VBD cord-010027-r0tl01kq 1743 4 present present JJ cord-010027-r0tl01kq 1743 5 and and CC cord-010027-r0tl01kq 1743 6 the the DT cord-010027-r0tl01kq 1743 7 mass mass NN cord-010027-r0tl01kq 1743 8 remained remain VBD cord-010027-r0tl01kq 1743 9 stable stable JJ cord-010027-r0tl01kq 1743 10 on on IN cord-010027-r0tl01kq 1743 11 sequential sequential JJ cord-010027-r0tl01kq 1743 12 CT ct NN cord-010027-r0tl01kq 1743 13 and and CC cord-010027-r0tl01kq 1743 14 ultrasound ultrasound NN cord-010027-r0tl01kq 1743 15 scans scan NNS cord-010027-r0tl01kq 1743 16 . . . cord-010027-r0tl01kq 1744 1 On on IN cord-010027-r0tl01kq 1744 2 positron positron NN cord-010027-r0tl01kq 1744 3 emission emission NN cord-010027-r0tl01kq 1744 4 tomography tomography NN cord-010027-r0tl01kq 1744 5 ( ( -LRB- cord-010027-r0tl01kq 1744 6 PET pet NN cord-010027-r0tl01kq 1744 7 ) ) -RRB- cord-010027-r0tl01kq 1744 8 the the DT cord-010027-r0tl01kq 1744 9 lesion lesion NN cord-010027-r0tl01kq 1744 10 had have VBD cord-010027-r0tl01kq 1744 11 a a DT cord-010027-r0tl01kq 1744 12 low low JJ cord-010027-r0tl01kq 1744 13 signal signal NN cord-010027-r0tl01kq 1744 14 with with IN cord-010027-r0tl01kq 1744 15 moderate moderate JJ cord-010027-r0tl01kq 1744 16 uptake uptake NN cord-010027-r0tl01kq 1744 17 . . . cord-010027-r0tl01kq 1745 1 All all DT cord-010027-r0tl01kq 1745 2 haematological haematological JJ cord-010027-r0tl01kq 1745 3 investigations investigation NNS cord-010027-r0tl01kq 1745 4 were be VBD cord-010027-r0tl01kq 1745 5 within within IN cord-010027-r0tl01kq 1745 6 normal normal JJ cord-010027-r0tl01kq 1745 7 limits limit NNS cord-010027-r0tl01kq 1745 8 including include VBG cord-010027-r0tl01kq 1745 9 a a DT cord-010027-r0tl01kq 1745 10 negative negative JJ cord-010027-r0tl01kq 1745 11 Epstein Epstein NNP cord-010027-r0tl01kq 1745 12 Barr Barr NNP cord-010027-r0tl01kq 1745 13 Virus Virus NNP cord-010027-r0tl01kq 1745 14 ( ( -LRB- cord-010027-r0tl01kq 1745 15 EBV EBV NNP cord-010027-r0tl01kq 1745 16 ) ) -RRB- cord-010027-r0tl01kq 1745 17 test test NN cord-010027-r0tl01kq 1745 18 . . . cord-010027-r0tl01kq 1746 1 His -PRON- PRP$ cord-010027-r0tl01kq 1746 2 past past JJ cord-010027-r0tl01kq 1746 3 medical medical JJ cord-010027-r0tl01kq 1746 4 history history NN cord-010027-r0tl01kq 1746 5 included include VBD cord-010027-r0tl01kq 1746 6 previous previous JJ cord-010027-r0tl01kq 1746 7 immunosuppressive immunosuppressive JJ cord-010027-r0tl01kq 1746 8 therapy therapy NN cord-010027-r0tl01kq 1746 9 for for IN cord-010027-r0tl01kq 1746 10 inflammatory inflammatory JJ cord-010027-r0tl01kq 1746 11 bowel bowel NN cord-010027-r0tl01kq 1746 12 disease disease NN cord-010027-r0tl01kq 1746 13 . . . cord-010027-r0tl01kq 1747 1 A a DT cord-010027-r0tl01kq 1747 2 core core NN cord-010027-r0tl01kq 1747 3 biopsy biopsy NN cord-010027-r0tl01kq 1747 4 under under IN cord-010027-r0tl01kq 1747 5 CT CT NNP cord-010027-r0tl01kq 1747 6 guidance guidance NN cord-010027-r0tl01kq 1747 7 was be VBD cord-010027-r0tl01kq 1747 8 performed perform VBN cord-010027-r0tl01kq 1747 9 . . . cord-010027-r0tl01kq 1748 1 The the DT cord-010027-r0tl01kq 1748 2 cores core NNS cord-010027-r0tl01kq 1748 3 showed show VBD cord-010027-r0tl01kq 1748 4 a a DT cord-010027-r0tl01kq 1748 5 paucicellular paucicellular JJ cord-010027-r0tl01kq 1748 6 spindle spindle NN cord-010027-r0tl01kq 1748 7 cell cell NN cord-010027-r0tl01kq 1748 8 lesion lesion NN cord-010027-r0tl01kq 1748 9 with with IN cord-010027-r0tl01kq 1748 10 bland bland JJ cord-010027-r0tl01kq 1748 11 , , , cord-010027-r0tl01kq 1748 12 blunt blunt JJ cord-010027-r0tl01kq 1748 13 ended ended JJ cord-010027-r0tl01kq 1748 14 nuclei nucleus NNS cord-010027-r0tl01kq 1748 15 , , , cord-010027-r0tl01kq 1748 16 no no DT cord-010027-r0tl01kq 1748 17 cytological cytological JJ cord-010027-r0tl01kq 1748 18 atypia atypia NN cord-010027-r0tl01kq 1748 19 and and CC cord-010027-r0tl01kq 1748 20 a a DT cord-010027-r0tl01kq 1748 21 sparse sparse JJ cord-010027-r0tl01kq 1748 22 chronic chronic JJ cord-010027-r0tl01kq 1748 23 inflammatory inflammatory JJ cord-010027-r0tl01kq 1748 24 infiltrate infiltrate NN cord-010027-r0tl01kq 1748 25 . . . cord-010027-r0tl01kq 1749 1 There there EX cord-010027-r0tl01kq 1749 2 was be VBD cord-010027-r0tl01kq 1749 3 no no DT cord-010027-r0tl01kq 1749 4 necrosis necrosis NN cord-010027-r0tl01kq 1749 5 . . . cord-010027-r0tl01kq 1750 1 The the DT cord-010027-r0tl01kq 1750 2 spindle spindle NN cord-010027-r0tl01kq 1750 3 cells cell NNS cord-010027-r0tl01kq 1750 4 stained stain VBD cord-010027-r0tl01kq 1750 5 positive positive JJ cord-010027-r0tl01kq 1750 6 for for IN cord-010027-r0tl01kq 1750 7 smooth smooth JJ cord-010027-r0tl01kq 1750 8 muscle muscle NN cord-010027-r0tl01kq 1750 9 actin actin NN cord-010027-r0tl01kq 1750 10 ( ( -LRB- cord-010027-r0tl01kq 1750 11 SMA SMA NNP cord-010027-r0tl01kq 1750 12 ) ) -RRB- cord-010027-r0tl01kq 1750 13 and and CC cord-010027-r0tl01kq 1750 14 H H NNP cord-010027-r0tl01kq 1750 15 - - HYPH cord-010027-r0tl01kq 1750 16 Caldesmon Caldesmon NNP cord-010027-r0tl01kq 1750 17 indicating indicate VBG cord-010027-r0tl01kq 1750 18 this this DT cord-010027-r0tl01kq 1750 19 to to TO cord-010027-r0tl01kq 1750 20 be be VB cord-010027-r0tl01kq 1750 21 a a DT cord-010027-r0tl01kq 1750 22 splenic splenic JJ cord-010027-r0tl01kq 1750 23 leiomyoma leiomyoma NN cord-010027-r0tl01kq 1750 24 . . . cord-010027-r0tl01kq 1751 1 Splenic splenic JJ cord-010027-r0tl01kq 1751 2 lesions lesion NNS cord-010027-r0tl01kq 1751 3 are be VBP cord-010027-r0tl01kq 1751 4 uncommon uncommon JJ cord-010027-r0tl01kq 1751 5 and and CC cord-010027-r0tl01kq 1751 6 within within IN cord-010027-r0tl01kq 1751 7 their -PRON- PRP$ cord-010027-r0tl01kq 1751 8 differential differential NN cord-010027-r0tl01kq 1751 9 include include VBP cord-010027-r0tl01kq 1751 10 , , , cord-010027-r0tl01kq 1751 11 lymphoma lymphoma NN cord-010027-r0tl01kq 1751 12 , , , cord-010027-r0tl01kq 1751 13 inflammatory inflammatory JJ cord-010027-r0tl01kq 1751 14 pseudotumour pseudotumour NN cord-010027-r0tl01kq 1751 15 , , , cord-010027-r0tl01kq 1751 16 harmatomas harmatomas NNP cord-010027-r0tl01kq 1751 17 and and CC cord-010027-r0tl01kq 1751 18 leiomyomas leiomyomas NNP cord-010027-r0tl01kq 1751 19 . . . cord-010027-r0tl01kq 1752 1 ( ( -LRB- cord-010027-r0tl01kq 1752 2 1 1 CD cord-010027-r0tl01kq 1752 3 ) ) -RRB- cord-010027-r0tl01kq 1753 1 A a DT cord-010027-r0tl01kq 1753 2 splenic splenic JJ cord-010027-r0tl01kq 1753 3 leiomyoma leiomyoma NN cord-010027-r0tl01kq 1753 4 is be VBZ cord-010027-r0tl01kq 1753 5 an an DT cord-010027-r0tl01kq 1753 6 unusual unusual JJ cord-010027-r0tl01kq 1753 7 and and CC cord-010027-r0tl01kq 1753 8 rare rare JJ cord-010027-r0tl01kq 1753 9 benign benign JJ cord-010027-r0tl01kq 1753 10 smooth smooth JJ cord-010027-r0tl01kq 1753 11 muscle muscle NN cord-010027-r0tl01kq 1753 12 tumour tumour NN cord-010027-r0tl01kq 1753 13 with with IN cord-010027-r0tl01kq 1753 14 an an DT cord-010027-r0tl01kq 1753 15 unknown unknown JJ cord-010027-r0tl01kq 1753 16 pathogenesis pathogenesis NN cord-010027-r0tl01kq 1753 17 . . . cord-010027-r0tl01kq 1754 1 They -PRON- PRP cord-010027-r0tl01kq 1754 2 are be VBP cord-010027-r0tl01kq 1754 3 thought think VBN cord-010027-r0tl01kq 1754 4 to to TO cord-010027-r0tl01kq 1754 5 arise arise VB cord-010027-r0tl01kq 1754 6 from from IN cord-010027-r0tl01kq 1754 7 the the DT cord-010027-r0tl01kq 1754 8 capsule capsule NN cord-010027-r0tl01kq 1754 9 and and CC cord-010027-r0tl01kq 1754 10 blood blood NN cord-010027-r0tl01kq 1754 11 vessel vessel NN cord-010027-r0tl01kq 1754 12 walls wall NNS cord-010027-r0tl01kq 1754 13 of of IN cord-010027-r0tl01kq 1754 14 organs organ NNS cord-010027-r0tl01kq 1754 15 . . . cord-010027-r0tl01kq 1755 1 ( ( -LRB- cord-010027-r0tl01kq 1755 2 2 2 LS cord-010027-r0tl01kq 1755 3 ) ) -RRB- cord-010027-r0tl01kq 1755 4 They -PRON- PRP cord-010027-r0tl01kq 1755 5 have have VBP cord-010027-r0tl01kq 1755 6 been be VBN cord-010027-r0tl01kq 1755 7 documented document VBN cord-010027-r0tl01kq 1755 8 in in IN cord-010027-r0tl01kq 1755 9 immunosuppressed immunosuppressed JJ cord-010027-r0tl01kq 1755 10 states state NNS cord-010027-r0tl01kq 1755 11 ( ( -LRB- cord-010027-r0tl01kq 1755 12 constitutional constitutional JJ cord-010027-r0tl01kq 1755 13 or or CC cord-010027-r0tl01kq 1755 14 acquired acquire VBN cord-010027-r0tl01kq 1755 15 ) ) -RRB- cord-010027-r0tl01kq 1755 16 , , , cord-010027-r0tl01kq 1755 17 in in IN cord-010027-r0tl01kq 1755 18 those those DT cord-010027-r0tl01kq 1755 19 with with IN cord-010027-r0tl01kq 1755 20 EBV EBV NNP cord-010027-r0tl01kq 1755 21 infection infection NN cord-010027-r0tl01kq 1755 22 and and CC cord-010027-r0tl01kq 1755 23 in in IN cord-010027-r0tl01kq 1755 24 children child NNS cord-010027-r0tl01kq 1755 25 with with IN cord-010027-r0tl01kq 1755 26 ataxia ataxia NN cord-010027-r0tl01kq 1755 27 - - HYPH cord-010027-r0tl01kq 1755 28 telangiectasia telangiectasia NN cord-010027-r0tl01kq 1755 29 . . . cord-010027-r0tl01kq 1756 1 ( ( -LRB- cord-010027-r0tl01kq 1756 2 2 2 LS cord-010027-r0tl01kq 1756 3 ) ) -RRB- cord-010027-r0tl01kq 1756 4 Leiomyomas Leiomyomas NNP cord-010027-r0tl01kq 1756 5 within within IN cord-010027-r0tl01kq 1756 6 the the DT cord-010027-r0tl01kq 1756 7 spleen spleen NNS cord-010027-r0tl01kq 1756 8 are be VBP cord-010027-r0tl01kq 1756 9 rarely rarely RB cord-010027-r0tl01kq 1756 10 reported report VBN cord-010027-r0tl01kq 1756 11 in in IN cord-010027-r0tl01kq 1756 12 the the DT cord-010027-r0tl01kq 1756 13 literature literature NN cord-010027-r0tl01kq 1756 14 , , , cord-010027-r0tl01kq 1756 15 especially especially RB cord-010027-r0tl01kq 1756 16 in in IN cord-010027-r0tl01kq 1756 17 those those DT cord-010027-r0tl01kq 1756 18 patients patient NNS cord-010027-r0tl01kq 1756 19 over over IN cord-010027-r0tl01kq 1756 20 the the DT cord-010027-r0tl01kq 1756 21 age age NN cord-010027-r0tl01kq 1756 22 of of IN cord-010027-r0tl01kq 1756 23 eighteen eighteen CD cord-010027-r0tl01kq 1756 24 . . . cord-010027-r0tl01kq 1757 1 In in IN cord-010027-r0tl01kq 1757 2 this this DT cord-010027-r0tl01kq 1757 3 case case NN cord-010027-r0tl01kq 1757 4 there there EX cord-010027-r0tl01kq 1757 5 was be VBD cord-010027-r0tl01kq 1757 6 historical historical JJ cord-010027-r0tl01kq 1757 7 immunosuppression immunosuppression NN cord-010027-r0tl01kq 1757 8 , , , cord-010027-r0tl01kq 1757 9 however however RB cord-010027-r0tl01kq 1757 10 leiomyomas leiomyomas NNP cord-010027-r0tl01kq 1757 11 should should MD cord-010027-r0tl01kq 1757 12 be be VB cord-010027-r0tl01kq 1757 13 considered consider VBN cord-010027-r0tl01kq 1757 14 in in IN cord-010027-r0tl01kq 1757 15 the the DT cord-010027-r0tl01kq 1757 16 differential differential JJ cord-010027-r0tl01kq 1757 17 diagnosis diagnosis NN cord-010027-r0tl01kq 1757 18 of of IN cord-010027-r0tl01kq 1757 19 well well RB cord-010027-r0tl01kq 1757 20 - - HYPH cord-010027-r0tl01kq 1757 21 defined define VBN cord-010027-r0tl01kq 1757 22 solitary solitary JJ cord-010027-r0tl01kq 1757 23 splenic splenic JJ cord-010027-r0tl01kq 1757 24 lesions lesion NNS cord-010027-r0tl01kq 1757 25 Purpose Purpose NNP cord-010027-r0tl01kq 1757 26 of of IN cord-010027-r0tl01kq 1757 27 the the DT cord-010027-r0tl01kq 1757 28 Study study NN cord-010027-r0tl01kq 1757 29 : : : cord-010027-r0tl01kq 1758 1 The the DT cord-010027-r0tl01kq 1758 2 Zucker Zucker NNP cord-010027-r0tl01kq 1758 3 Diabetic diabetic JJ cord-010027-r0tl01kq 1758 4 Fatty Fatty NNP cord-010027-r0tl01kq 1758 5 ( ( -LRB- cord-010027-r0tl01kq 1758 6 ZDF ZDF NNP cord-010027-r0tl01kq 1758 7 ) ) -RRB- cord-010027-r0tl01kq 1758 8 rat rat NN cord-010027-r0tl01kq 1758 9 is be VBZ cord-010027-r0tl01kq 1758 10 extensively extensively RB cord-010027-r0tl01kq 1758 11 used use VBN cord-010027-r0tl01kq 1758 12 as as IN cord-010027-r0tl01kq 1758 13 a a DT cord-010027-r0tl01kq 1758 14 model model NN cord-010027-r0tl01kq 1758 15 of of IN cord-010027-r0tl01kq 1758 16 Diabetic diabetic JJ cord-010027-r0tl01kq 1758 17 Kidney Kidney NNP cord-010027-r0tl01kq 1758 18 Disease Disease NNP cord-010027-r0tl01kq 1758 19 ( ( -LRB- cord-010027-r0tl01kq 1758 20 DKD DKD NNP cord-010027-r0tl01kq 1758 21 ) ) -RRB- cord-010027-r0tl01kq 1758 22 associated associate VBN cord-010027-r0tl01kq 1758 23 with with IN cord-010027-r0tl01kq 1758 24 obesity obesity NN cord-010027-r0tl01kq 1758 25 and and CC cord-010027-r0tl01kq 1758 26 progressive progressive JJ cord-010027-r0tl01kq 1758 27 insulin insulin NN cord-010027-r0tl01kq 1758 28 resistance resistance NN cord-010027-r0tl01kq 1758 29 ( ( -LRB- cord-010027-r0tl01kq 1758 30 ' ' `` cord-010027-r0tl01kq 1758 31 diabesity diabesity NN cord-010027-r0tl01kq 1758 32 ' ' '' cord-010027-r0tl01kq 1758 33 ) ) -RRB- cord-010027-r0tl01kq 1758 34 . . . cord-010027-r0tl01kq 1759 1 This this DT cord-010027-r0tl01kq 1759 2 study study NN cord-010027-r0tl01kq 1759 3 aimed aim VBD cord-010027-r0tl01kq 1759 4 to to TO cord-010027-r0tl01kq 1759 5 validate validate VB cord-010027-r0tl01kq 1759 6 qualitative qualitative JJ cord-010027-r0tl01kq 1759 7 ultrastructural ultrastructural JJ cord-010027-r0tl01kq 1759 8 parameters parameter NNS cord-010027-r0tl01kq 1759 9 of of IN cord-010027-r0tl01kq 1759 10 glomerular glomerular JJ cord-010027-r0tl01kq 1759 11 injury injury NN cord-010027-r0tl01kq 1759 12 in in IN cord-010027-r0tl01kq 1759 13 the the DT cord-010027-r0tl01kq 1759 14 ZDF ZDF NNP cord-010027-r0tl01kq 1759 15 animal animal NN cord-010027-r0tl01kq 1759 16 model model NN cord-010027-r0tl01kq 1759 17 and and CC cord-010027-r0tl01kq 1759 18 apply apply VB cord-010027-r0tl01kq 1759 19 these these DT cord-010027-r0tl01kq 1759 20 criteria criterion NNS cord-010027-r0tl01kq 1759 21 to to IN cord-010027-r0tl01kq 1759 22 an an DT cord-010027-r0tl01kq 1759 23 interventional interventional JJ cord-010027-r0tl01kq 1759 24 study study NN cord-010027-r0tl01kq 1759 25 investigating investigate VBG cord-010027-r0tl01kq 1759 26 the the DT cord-010027-r0tl01kq 1759 27 effects effect NNS cord-010027-r0tl01kq 1759 28 of of IN cord-010027-r0tl01kq 1759 29 Roux roux NN cord-010027-r0tl01kq 1759 30 - - HYPH cord-010027-r0tl01kq 1759 31 en en FW cord-010027-r0tl01kq 1759 32 - - HYPH cord-010027-r0tl01kq 1759 33 Y Y NNP cord-010027-r0tl01kq 1759 34 gastric gastric JJ cord-010027-r0tl01kq 1759 35 bypass bypass NN cord-010027-r0tl01kq 1759 36 ( ( -LRB- cord-010027-r0tl01kq 1759 37 RYGB RYGB NNP cord-010027-r0tl01kq 1759 38 ) ) -RRB- cord-010027-r0tl01kq 1759 39 on on IN cord-010027-r0tl01kq 1759 40 DKD DKD NNP cord-010027-r0tl01kq 1759 41 . . . cord-010027-r0tl01kq 1760 1 Methods method NNS cord-010027-r0tl01kq 1760 2 : : : cord-010027-r0tl01kq 1761 1 Superficial superficial JJ cord-010027-r0tl01kq 1761 2 renal renal JJ cord-010027-r0tl01kq 1761 3 cortices cortex NNS cord-010027-r0tl01kq 1761 4 were be VBD cord-010027-r0tl01kq 1761 5 immersion immersion NN cord-010027-r0tl01kq 1761 6 - - HYPH cord-010027-r0tl01kq 1761 7 fixed fix VBN cord-010027-r0tl01kq 1761 8 in in IN cord-010027-r0tl01kq 1761 9 2.5 2.5 CD cord-010027-r0tl01kq 1761 10 % % NN cord-010027-r0tl01kq 1761 11 glutaraldehyde glutaraldehyde NN cord-010027-r0tl01kq 1761 12 , , , cord-010027-r0tl01kq 1761 13 post post JJ cord-010027-r0tl01kq 1761 14 - - JJ cord-010027-r0tl01kq 1761 15 fixed fix VBN cord-010027-r0tl01kq 1761 16 in in IN cord-010027-r0tl01kq 1761 17 1 1 CD cord-010027-r0tl01kq 1761 18 % % NN cord-010027-r0tl01kq 1761 19 osmium osmium NN cord-010027-r0tl01kq 1761 20 tetroxide tetroxide NN cord-010027-r0tl01kq 1761 21 , , , cord-010027-r0tl01kq 1761 22 processed process VBN cord-010027-r0tl01kq 1761 23 and and CC cord-010027-r0tl01kq 1761 24 embedded embed VBN cord-010027-r0tl01kq 1761 25 in in IN cord-010027-r0tl01kq 1761 26 epoxy epoxy NN cord-010027-r0tl01kq 1761 27 resin resin NN cord-010027-r0tl01kq 1761 28 prior prior JJ cord-010027-r0tl01kq 1761 29 viewing view VBG cord-010027-r0tl01kq 1761 30 under under IN cord-010027-r0tl01kq 1761 31 a a DT cord-010027-r0tl01kq 1761 32 Technai Technai NNP cord-010027-r0tl01kq 1761 33 12 12 CD cord-010027-r0tl01kq 1761 34 transmission transmission NN cord-010027-r0tl01kq 1761 35 electron electron NN cord-010027-r0tl01kq 1761 36 microscope microscope NN cord-010027-r0tl01kq 1761 37 . . . cord-010027-r0tl01kq 1762 1 Glomerular glomerular JJ cord-010027-r0tl01kq 1762 2 basement basement NN cord-010027-r0tl01kq 1762 3 membrane membrane NN cord-010027-r0tl01kq 1762 4 ( ( -LRB- cord-010027-r0tl01kq 1762 5 GBM GBM NNP cord-010027-r0tl01kq 1762 6 ) ) -RRB- cord-010027-r0tl01kq 1762 7 thickness thickness NN cord-010027-r0tl01kq 1762 8 , , , cord-010027-r0tl01kq 1762 9 podocyte podocyte NNP cord-010027-r0tl01kq 1762 10 foot foot NN cord-010027-r0tl01kq 1762 11 process process NN cord-010027-r0tl01kq 1762 12 diameter diameter NN cord-010027-r0tl01kq 1762 13 ( ( -LRB- cord-010027-r0tl01kq 1762 14 PFPD PFPD NNP cord-010027-r0tl01kq 1762 15 ) ) -RRB- cord-010027-r0tl01kq 1762 16 and and CC cord-010027-r0tl01kq 1762 17 podocyte podocyte NNP cord-010027-r0tl01kq 1762 18 foot foot NN cord-010027-r0tl01kq 1762 19 process process NN cord-010027-r0tl01kq 1762 20 frequency frequency NN cord-010027-r0tl01kq 1762 21 ( ( -LRB- cord-010027-r0tl01kq 1762 22 PFPF PFPF NNP cord-010027-r0tl01kq 1762 23 ) ) -RRB- cord-010027-r0tl01kq 1763 1 per per IN cord-010027-r0tl01kq 1763 2 unit unit NN cord-010027-r0tl01kq 1763 3 length length NN cord-010027-r0tl01kq 1763 4 of of IN cord-010027-r0tl01kq 1763 5 GBM GBM NNP cord-010027-r0tl01kq 1763 6 were be VBD cord-010027-r0tl01kq 1763 7 determined determine VBN cord-010027-r0tl01kq 1763 8 for for IN cord-010027-r0tl01kq 1763 9 each each DT cord-010027-r0tl01kq 1763 10 group group NN cord-010027-r0tl01kq 1763 11 ( ( -LRB- cord-010027-r0tl01kq 1763 12 Sham Sham NNP cord-010027-r0tl01kq 1763 13 and and CC cord-010027-r0tl01kq 1763 14 RYGB RYGB NNP cord-010027-r0tl01kq 1763 15 operated operate VBD cord-010027-r0tl01kq 1763 16 ZDF ZDF NNP cord-010027-r0tl01kq 1763 17 fa fa NNP cord-010027-r0tl01kq 1763 18 / / SYM cord-010027-r0tl01kq 1763 19 fa fa NN cord-010027-r0tl01kq 1763 20 diabetic diabetic JJ cord-010027-r0tl01kq 1763 21 animals animal NNS cord-010027-r0tl01kq 1763 22 vs vs IN cord-010027-r0tl01kq 1763 23 non non JJ cord-010027-r0tl01kq 1763 24 - - JJ cord-010027-r0tl01kq 1763 25 operated operated JJ cord-010027-r0tl01kq 1763 26 non non JJ cord-010027-r0tl01kq 1763 27 - - JJ cord-010027-r0tl01kq 1763 28 diabetic diabetic JJ cord-010027-r0tl01kq 1763 29 ZDF ZDF NNP cord-010027-r0tl01kq 1763 30 fa/+ fa/+ IN cord-010027-r0tl01kq 1763 31 lean lean JJ cord-010027-r0tl01kq 1763 32 controls control NNS cord-010027-r0tl01kq 1763 33 ) ) -RRB- cord-010027-r0tl01kq 1763 34 . . . cord-010027-r0tl01kq 1764 1 Statistical statistical JJ cord-010027-r0tl01kq 1764 2 analysis analysis NN cord-010027-r0tl01kq 1764 3 was be VBD cord-010027-r0tl01kq 1764 4 performed perform VBN cord-010027-r0tl01kq 1764 5 using use VBG cord-010027-r0tl01kq 1764 6 a a DT cord-010027-r0tl01kq 1764 7 Mann Mann NNP cord-010027-r0tl01kq 1764 8 Whitney Whitney NNP cord-010027-r0tl01kq 1764 9 U U NNP cord-010027-r0tl01kq 1764 10 test test NN cord-010027-r0tl01kq 1764 11 and and CC cord-010027-r0tl01kq 1764 12 an an DT cord-010027-r0tl01kq 1764 13 unpaired unpaired JJ cord-010027-r0tl01kq 1764 14 t t NN cord-010027-r0tl01kq 1764 15 - - HYPH cord-010027-r0tl01kq 1764 16 test test NN cord-010027-r0tl01kq 1764 17 where where WRB cord-010027-r0tl01kq 1764 18 appropriate appropriate JJ cord-010027-r0tl01kq 1764 19 . . . cord-010027-r0tl01kq 1765 1 Summary summary NN cord-010027-r0tl01kq 1765 2 of of IN cord-010027-r0tl01kq 1765 3 Results result NNS cord-010027-r0tl01kq 1765 4 : : : cord-010027-r0tl01kq 1765 5 Selected select VBN cord-010027-r0tl01kq 1765 6 TEM tem NN cord-010027-r0tl01kq 1765 7 parameters parameter NNS cord-010027-r0tl01kq 1765 8 ( ( -LRB- cord-010027-r0tl01kq 1765 9 GBM GBM NNP cord-010027-r0tl01kq 1765 10 thickness thickness NN cord-010027-r0tl01kq 1765 11 , , , cord-010027-r0tl01kq 1765 12 PFPD PFPD NNP cord-010027-r0tl01kq 1765 13 and and CC cord-010027-r0tl01kq 1765 14 PFPF PFPF NNP cord-010027-r0tl01kq 1765 15 ) ) -RRB- cord-010027-r0tl01kq 1765 16 demonstrated demonstrate VBD cord-010027-r0tl01kq 1765 17 significant significant JJ cord-010027-r0tl01kq 1765 18 differences difference NNS cord-010027-r0tl01kq 1765 19 between between IN cord-010027-r0tl01kq 1765 20 specified specify VBN cord-010027-r0tl01kq 1765 21 Sham Sham NNP cord-010027-r0tl01kq 1765 22 - - HYPH cord-010027-r0tl01kq 1765 23 operated operate VBN cord-010027-r0tl01kq 1765 24 ZDF ZDF NNP cord-010027-r0tl01kq 1765 25 fa fa NNP cord-010027-r0tl01kq 1765 26 / / SYM cord-010027-r0tl01kq 1765 27 fa fa FW cord-010027-r0tl01kq 1765 28 vs vs FW cord-010027-r0tl01kq 1765 29 fa/+ fa/+ NN cord-010027-r0tl01kq 1765 30 samples sample NNS cord-010027-r0tl01kq 1765 31 , , , cord-010027-r0tl01kq 1765 32 p=0.017 p=0.017 NNS cord-010027-r0tl01kq 1765 33 . . . cord-010027-r0tl01kq 1766 1 Analysis analysis NN cord-010027-r0tl01kq 1766 2 of of IN cord-010027-r0tl01kq 1766 3 RYGB RYGB NNP cord-010027-r0tl01kq 1766 4 interventional interventional JJ cord-010027-r0tl01kq 1766 5 study study NN cord-010027-r0tl01kq 1766 6 samples sample NNS cord-010027-r0tl01kq 1766 7 still still RB cord-010027-r0tl01kq 1766 8 in in IN cord-010027-r0tl01kq 1766 9 progress progress NN cord-010027-r0tl01kq 1766 10 . . . cord-010027-r0tl01kq 1767 1 Early early JJ cord-010027-r0tl01kq 1767 2 post post JJ cord-010027-r0tl01kq 1767 3 - - JJ cord-010027-r0tl01kq 1767 4 operative operative JJ cord-010027-r0tl01kq 1767 5 glucose glucose NN cord-010027-r0tl01kq 1767 6 measurements measurement NNS cord-010027-r0tl01kq 1767 7 showed show VBD cord-010027-r0tl01kq 1767 8 a a DT cord-010027-r0tl01kq 1767 9 significant significant JJ cord-010027-r0tl01kq 1767 10 improvement improvement NN cord-010027-r0tl01kq 1767 11 in in IN cord-010027-r0tl01kq 1767 12 glucose glucose NN cord-010027-r0tl01kq 1767 13 homeostasis homeostasis NN cord-010027-r0tl01kq 1767 14 in in IN cord-010027-r0tl01kq 1767 15 the the DT cord-010027-r0tl01kq 1767 16 RYGB RYGB NNP cord-010027-r0tl01kq 1767 17 group group NN cord-010027-r0tl01kq 1767 18 ( ( -LRB- cord-010027-r0tl01kq 1767 19 RYGB RYGB NNP cord-010027-r0tl01kq 1767 20 vs vs IN cord-010027-r0tl01kq 1767 21 SHAM SHAM NNP cord-010027-r0tl01kq 1767 22 , , , cord-010027-r0tl01kq 1767 23 P=0.0001 P=0.0001 NNP cord-010027-r0tl01kq 1767 24 ) ) -RRB- cord-010027-r0tl01kq 1767 25 occurring occur VBG cord-010027-r0tl01kq 1767 26 independently independently RB cord-010027-r0tl01kq 1767 27 of of IN cord-010027-r0tl01kq 1767 28 weight weight NN cord-010027-r0tl01kq 1767 29 loss loss NN cord-010027-r0tl01kq 1767 30 . . . cord-010027-r0tl01kq 1768 1 Urinary urinary JJ cord-010027-r0tl01kq 1768 2 albumin albumin NN cord-010027-r0tl01kq 1768 3 : : : cord-010027-r0tl01kq 1769 1 creatinine creatinine NN cord-010027-r0tl01kq 1769 2 ratios ratio NNS cord-010027-r0tl01kq 1769 3 were be VBD cord-010027-r0tl01kq 1769 4 lower low JJR cord-010027-r0tl01kq 1769 5 in in IN cord-010027-r0tl01kq 1769 6 the the DT cord-010027-r0tl01kq 1769 7 RYGB RYGB NNP cord-010027-r0tl01kq 1769 8 group group NN cord-010027-r0tl01kq 1769 9 vs vs IN cord-010027-r0tl01kq 1770 1 Sham Sham NNP cord-010027-r0tl01kq 1770 2 operated operate VBD cord-010027-r0tl01kq 1770 3 positive positive JJ cord-010027-r0tl01kq 1770 4 controls control NNS cord-010027-r0tl01kq 1770 5 ( ( -LRB- cord-010027-r0tl01kq 1770 6 P=0.0079 P=0.0079 NNP cord-010027-r0tl01kq 1770 7 ) ) -RRB- cord-010027-r0tl01kq 1770 8 and and CC cord-010027-r0tl01kq 1770 9 were be VBD cord-010027-r0tl01kq 1770 10 comparable comparable JJ cord-010027-r0tl01kq 1770 11 with with IN cord-010027-r0tl01kq 1770 12 age age NN cord-010027-r0tl01kq 1770 13 - - HYPH cord-010027-r0tl01kq 1770 14 matched match VBN cord-010027-r0tl01kq 1770 15 lean lean JJ cord-010027-r0tl01kq 1770 16 control control NN cord-010027-r0tl01kq 1770 17 fa/+ fa/+ NN cord-010027-r0tl01kq 1770 18 samples sample NNS cord-010027-r0tl01kq 1770 19 . . . cord-010027-r0tl01kq 1771 1 Conclusions conclusion NNS cord-010027-r0tl01kq 1771 2 : : : cord-010027-r0tl01kq 1772 1 Preliminary preliminary JJ cord-010027-r0tl01kq 1772 2 findings finding NNS cord-010027-r0tl01kq 1772 3 support support VBP cord-010027-r0tl01kq 1772 4 a a DT cord-010027-r0tl01kq 1772 5 beneficial beneficial JJ cord-010027-r0tl01kq 1772 6 role role NN cord-010027-r0tl01kq 1772 7 for for IN cord-010027-r0tl01kq 1772 8 RYGB RYGB NNP cord-010027-r0tl01kq 1772 9 in in IN cord-010027-r0tl01kq 1772 10 an an DT cord-010027-r0tl01kq 1772 11 animal animal NN cord-010027-r0tl01kq 1772 12 model model NN cord-010027-r0tl01kq 1772 13 of of IN cord-010027-r0tl01kq 1772 14 ' ' `` cord-010027-r0tl01kq 1772 15 Diabesity Diabesity NNP cord-010027-r0tl01kq 1772 16 ' ' '' cord-010027-r0tl01kq 1772 17 . . . cord-010027-r0tl01kq 1773 1 Validated validate VBN cord-010027-r0tl01kq 1773 2 ultrastructural ultrastructural JJ cord-010027-r0tl01kq 1773 3 parameters parameter NNS cord-010027-r0tl01kq 1773 4 should should MD cord-010027-r0tl01kq 1773 5 assist assist VB cord-010027-r0tl01kq 1773 6 in in IN cord-010027-r0tl01kq 1773 7 elucidating elucidate VBG cord-010027-r0tl01kq 1773 8 changes change NNS cord-010027-r0tl01kq 1773 9 in in IN cord-010027-r0tl01kq 1773 10 podocyte podocyte NNP cord-010027-r0tl01kq 1773 11 activation activation NN cord-010027-r0tl01kq 1773 12 and and CC cord-010027-r0tl01kq 1773 13 differentiation differentiation NN cord-010027-r0tl01kq 1773 14 as as IN cord-010027-r0tl01kq 1773 15 mediators mediator NNS cord-010027-r0tl01kq 1773 16 of of IN cord-010027-r0tl01kq 1773 17 the the DT cord-010027-r0tl01kq 1773 18 observed observed JJ cord-010027-r0tl01kq 1773 19 remission remission NN cord-010027-r0tl01kq 1773 20 of of IN cord-010027-r0tl01kq 1773 21 albuminuria albuminuria NNS cord-010027-r0tl01kq 1773 22 following follow VBG cord-010027-r0tl01kq 1773 23 RYGB RYGB NNP cord-010027-r0tl01kq 1773 24 surgery surgery NN cord-010027-r0tl01kq 1773 25 . . . cord-010027-r0tl01kq 1774 1 Nottingham Nottingham NNP cord-010027-r0tl01kq 1774 2 University University NNP cord-010027-r0tl01kq 1774 3 Hospital Hospital NNP cord-010027-r0tl01kq 1774 4 , , , cord-010027-r0tl01kq 1774 5 Nottingham Nottingham NNP cord-010027-r0tl01kq 1774 6 , , , cord-010027-r0tl01kq 1774 7 UK UK NNP cord-010027-r0tl01kq 1774 8 Spitz Spitz NNP cord-010027-r0tl01kq 1774 9 naevus naevus NN cord-010027-r0tl01kq 1774 10 is be VBZ cord-010027-r0tl01kq 1774 11 a a DT cord-010027-r0tl01kq 1774 12 benign benign JJ cord-010027-r0tl01kq 1774 13 melanocytic melanocytic JJ cord-010027-r0tl01kq 1774 14 lesion lesion NN cord-010027-r0tl01kq 1774 15 that that WDT cord-010027-r0tl01kq 1774 16 shares share VBZ cord-010027-r0tl01kq 1774 17 many many JJ cord-010027-r0tl01kq 1774 18 histological histological JJ cord-010027-r0tl01kq 1774 19 features feature NNS cord-010027-r0tl01kq 1774 20 with with IN cord-010027-r0tl01kq 1774 21 malignant malignant JJ cord-010027-r0tl01kq 1774 22 melanoma melanoma NN cord-010027-r0tl01kq 1774 23 . . . cord-010027-r0tl01kq 1775 1 Although although IN cord-010027-r0tl01kq 1775 2 the the DT cord-010027-r0tl01kq 1775 3 morphological morphological JJ cord-010027-r0tl01kq 1775 4 criteria criterion NNS cord-010027-r0tl01kq 1775 5 differentiating differentiate VBG cord-010027-r0tl01kq 1775 6 the the DT cord-010027-r0tl01kq 1775 7 two two CD cord-010027-r0tl01kq 1775 8 entities entity NNS cord-010027-r0tl01kq 1775 9 are be VBP cord-010027-r0tl01kq 1775 10 well well RB cord-010027-r0tl01kq 1775 11 established establish VBN cord-010027-r0tl01kq 1775 12 however however RB cord-010027-r0tl01kq 1775 13 , , , cord-010027-r0tl01kq 1775 14 some some DT cord-010027-r0tl01kq 1775 15 cases case NNS cord-010027-r0tl01kq 1775 16 can can MD cord-010027-r0tl01kq 1775 17 be be VB cord-010027-r0tl01kq 1775 18 challenging challenging JJ cord-010027-r0tl01kq 1775 19 . . . cord-010027-r0tl01kq 1776 1 Many many JJ cord-010027-r0tl01kq 1776 2 isolated isolate VBN cord-010027-r0tl01kq 1776 3 markers marker NNS cord-010027-r0tl01kq 1776 4 have have VBP cord-010027-r0tl01kq 1776 5 been be VBN cord-010027-r0tl01kq 1776 6 proposed propose VBN cord-010027-r0tl01kq 1776 7 to to TO cord-010027-r0tl01kq 1776 8 help help VB cord-010027-r0tl01kq 1776 9 in in IN cord-010027-r0tl01kq 1776 10 differentiating differentiate VBG cord-010027-r0tl01kq 1776 11 Spitz Spitz NNP cord-010027-r0tl01kq 1776 12 naevus naevus NN cord-010027-r0tl01kq 1776 13 from from IN cord-010027-r0tl01kq 1776 14 melanoma melanoma NN cord-010027-r0tl01kq 1776 15 , , , cord-010027-r0tl01kq 1776 16 albeit albeit IN cord-010027-r0tl01kq 1776 17 none none NN cord-010027-r0tl01kq 1776 18 has have VBZ cord-010027-r0tl01kq 1776 19 been be VBN cord-010027-r0tl01kq 1776 20 shown show VBN cord-010027-r0tl01kq 1776 21 to to TO cord-010027-r0tl01kq 1776 22 be be VB cord-010027-r0tl01kq 1776 23 definitive definitive JJ cord-010027-r0tl01kq 1776 24 . . . cord-010027-r0tl01kq 1777 1 Aim aim VB cord-010027-r0tl01kq 1777 2 : : : cord-010027-r0tl01kq 1778 1 This this DT cord-010027-r0tl01kq 1778 2 is be VBZ cord-010027-r0tl01kq 1778 3 a a DT cord-010027-r0tl01kq 1778 4 preliminary preliminary JJ cord-010027-r0tl01kq 1778 5 study study NN cord-010027-r0tl01kq 1778 6 looking look VBG cord-010027-r0tl01kq 1778 7 at at IN cord-010027-r0tl01kq 1778 8 the the DT cord-010027-r0tl01kq 1778 9 immunohistochemical immunohistochemical JJ cord-010027-r0tl01kq 1778 10 expression expression NN cord-010027-r0tl01kq 1778 11 of of IN cord-010027-r0tl01kq 1778 12 3 3 CD cord-010027-r0tl01kq 1778 13 markers marker NNS cord-010027-r0tl01kq 1778 14 that that WDT cord-010027-r0tl01kq 1778 15 are be VBP cord-010027-r0tl01kq 1778 16 known know VBN cord-010027-r0tl01kq 1778 17 to to TO cord-010027-r0tl01kq 1778 18 have have VB cord-010027-r0tl01kq 1778 19 important important JJ cord-010027-r0tl01kq 1778 20 role role NN cord-010027-r0tl01kq 1778 21 in in IN cord-010027-r0tl01kq 1778 22 cell cell NN cord-010027-r0tl01kq 1778 23 cycle cycle NN cord-010027-r0tl01kq 1778 24 regulation regulation NN cord-010027-r0tl01kq 1778 25 , , , cord-010027-r0tl01kq 1778 26 proliferation proliferation NN cord-010027-r0tl01kq 1778 27 and and CC cord-010027-r0tl01kq 1778 28 melanocytic melanocytic JJ cord-010027-r0tl01kq 1778 29 differentiation differentiation NN cord-010027-r0tl01kq 1778 30 ( ( -LRB- cord-010027-r0tl01kq 1778 31 P16 P16 NNP cord-010027-r0tl01kq 1778 32 , , , cord-010027-r0tl01kq 1778 33 Ki67 Ki67 NNP cord-010027-r0tl01kq 1778 34 , , , cord-010027-r0tl01kq 1778 35 and and CC cord-010027-r0tl01kq 1778 36 HMB45 HMB45 NNP cord-010027-r0tl01kq 1778 37 ) ) -RRB- cord-010027-r0tl01kq 1778 38 . . . cord-010027-r0tl01kq 1779 1 The the DT cord-010027-r0tl01kq 1779 2 aim aim NN cord-010027-r0tl01kq 1779 3 is be VBZ cord-010027-r0tl01kq 1779 4 provide provide JJ cord-010027-r0tl01kq 1779 5 to to IN cord-010027-r0tl01kq 1779 6 a a DT cord-010027-r0tl01kq 1779 7 combination combination NN cord-010027-r0tl01kq 1779 8 of of IN cord-010027-r0tl01kq 1779 9 proteins protein NNS cord-010027-r0tl01kq 1779 10 that that WDT cord-010027-r0tl01kq 1779 11 can can MD cord-010027-r0tl01kq 1779 12 help help VB cord-010027-r0tl01kq 1779 13 in in IN cord-010027-r0tl01kq 1779 14 differentiating differentiate VBG cord-010027-r0tl01kq 1779 15 Spitz Spitz NNP cord-010027-r0tl01kq 1779 16 naevus naevus NN cord-010027-r0tl01kq 1779 17 from from IN cord-010027-r0tl01kq 1779 18 malignant malignant JJ cord-010027-r0tl01kq 1779 19 melanoma melanoma NN cord-010027-r0tl01kq 1779 20 . . . cord-010027-r0tl01kq 1780 1 The the DT cord-010027-r0tl01kq 1780 2 study study NN cord-010027-r0tl01kq 1780 3 included include VBD cord-010027-r0tl01kq 1780 4 12 12 CD cord-010027-r0tl01kq 1780 5 cases case NNS cord-010027-r0tl01kq 1780 6 of of IN cord-010027-r0tl01kq 1780 7 Spitz Spitz NNP cord-010027-r0tl01kq 1780 8 naevi naevi NN cord-010027-r0tl01kq 1780 9 , , , cord-010027-r0tl01kq 1780 10 6 6 CD cord-010027-r0tl01kq 1780 11 benign benign JJ cord-010027-r0tl01kq 1780 12 compound compound NN cord-010027-r0tl01kq 1780 13 naevi naevus NNS cord-010027-r0tl01kq 1780 14 and and CC cord-010027-r0tl01kq 1780 15 6 6 CD cord-010027-r0tl01kq 1780 16 cases case NNS cord-010027-r0tl01kq 1780 17 of of IN cord-010027-r0tl01kq 1780 18 malignant malignant JJ cord-010027-r0tl01kq 1780 19 melanoma melanoma NN cord-010027-r0tl01kq 1780 20 . . . cord-010027-r0tl01kq 1781 1 Immunohistochemical immunohistochemical JJ cord-010027-r0tl01kq 1781 2 expression expression NN cord-010027-r0tl01kq 1781 3 of of IN cord-010027-r0tl01kq 1781 4 p16 p16 NN cord-010027-r0tl01kq 1781 5 , , , cord-010027-r0tl01kq 1781 6 Ki67 Ki67 NNP cord-010027-r0tl01kq 1781 7 , , , cord-010027-r0tl01kq 1781 8 and and CC cord-010027-r0tl01kq 1781 9 HMB45 HMB45 NNP cord-010027-r0tl01kq 1781 10 has have VBZ cord-010027-r0tl01kq 1781 11 been be VBN cord-010027-r0tl01kq 1781 12 accessed access VBN cord-010027-r0tl01kq 1781 13 and and CC cord-010027-r0tl01kq 1781 14 compared compare VBN cord-010027-r0tl01kq 1781 15 with with IN cord-010027-r0tl01kq 1781 16 the the DT cord-010027-r0tl01kq 1781 17 morphological morphological JJ cord-010027-r0tl01kq 1781 18 features feature NNS cord-010027-r0tl01kq 1781 19 of of IN cord-010027-r0tl01kq 1781 20 these these DT cord-010027-r0tl01kq 1781 21 lesions lesion NNS cord-010027-r0tl01kq 1781 22 . . . cord-010027-r0tl01kq 1782 1 Results result NNS cord-010027-r0tl01kq 1782 2 : : : cord-010027-r0tl01kq 1783 1 It -PRON- PRP cord-010027-r0tl01kq 1783 2 is be VBZ cord-010027-r0tl01kq 1783 3 noted note VBN cord-010027-r0tl01kq 1783 4 the the DT cord-010027-r0tl01kq 1783 5 mean mean NN cord-010027-r0tl01kq 1783 6 P16 P16 NNP cord-010027-r0tl01kq 1783 7 expression expression NN cord-010027-r0tl01kq 1783 8 is be VBZ cord-010027-r0tl01kq 1783 9 higher high JJR cord-010027-r0tl01kq 1783 10 in in IN cord-010027-r0tl01kq 1783 11 compound compound NN cord-010027-r0tl01kq 1783 12 and and CC cord-010027-r0tl01kq 1783 13 spitz spitz NNP cord-010027-r0tl01kq 1783 14 naevi naevi NNP cord-010027-r0tl01kq 1783 15 than than IN cord-010027-r0tl01kq 1783 16 melanoma melanoma NN cord-010027-r0tl01kq 1783 17 ( ( -LRB- cord-010027-r0tl01kq 1783 18 83 83 CD cord-010027-r0tl01kq 1783 19 , , , cord-010027-r0tl01kq 1783 20 91 91 CD cord-010027-r0tl01kq 1783 21 , , , cord-010027-r0tl01kq 1783 22 and and CC cord-010027-r0tl01kq 1783 23 36 36 CD cord-010027-r0tl01kq 1783 24 respectively respectively RB cord-010027-r0tl01kq 1783 25 ) ) -RRB- cord-010027-r0tl01kq 1783 26 . . . cord-010027-r0tl01kq 1784 1 Proliferation proliferation NN cord-010027-r0tl01kq 1784 2 activity activity NN cord-010027-r0tl01kq 1784 3 as as IN cord-010027-r0tl01kq 1784 4 measured measure VBN cord-010027-r0tl01kq 1784 5 by by IN cord-010027-r0tl01kq 1784 6 KI67 KI67 NNP cord-010027-r0tl01kq 1784 7 index index NN cord-010027-r0tl01kq 1784 8 is be VBZ cord-010027-r0tl01kq 1784 9 higher high JJR cord-010027-r0tl01kq 1784 10 in in IN cord-010027-r0tl01kq 1784 11 melanoma melanoma NN cord-010027-r0tl01kq 1784 12 in in IN cord-010027-r0tl01kq 1784 13 comparison comparison NN cord-010027-r0tl01kq 1784 14 with with IN cord-010027-r0tl01kq 1784 15 compound compound NNP cord-010027-r0tl01kq 1784 16 and and CC cord-010027-r0tl01kq 1784 17 spitz spitz NNP cord-010027-r0tl01kq 1784 18 naevi naevi NNP cord-010027-r0tl01kq 1784 19 ( ( -LRB- cord-010027-r0tl01kq 1784 20 30.8 30.8 CD cord-010027-r0tl01kq 1784 21 , , , cord-010027-r0tl01kq 1784 22 2.8 2.8 CD cord-010027-r0tl01kq 1784 23 , , , cord-010027-r0tl01kq 1784 24 and and CC cord-010027-r0tl01kq 1784 25 1.6 1.6 CD cord-010027-r0tl01kq 1784 26 respectively respectively RB cord-010027-r0tl01kq 1784 27 ) ) -RRB- cord-010027-r0tl01kq 1784 28 . . . cord-010027-r0tl01kq 1785 1 HMB45 HMB45 NNP cord-010027-r0tl01kq 1785 2 shows show VBZ cord-010027-r0tl01kq 1785 3 only only RB cord-010027-r0tl01kq 1785 4 junctional junctional JJ cord-010027-r0tl01kq 1785 5 positivity positivity NN cord-010027-r0tl01kq 1785 6 in in IN cord-010027-r0tl01kq 1785 7 9 9 CD cord-010027-r0tl01kq 1785 8 out out IN cord-010027-r0tl01kq 1785 9 of of IN cord-010027-r0tl01kq 1785 10 11 11 CD cord-010027-r0tl01kq 1785 11 cases case NNS cord-010027-r0tl01kq 1785 12 of of IN cord-010027-r0tl01kq 1785 13 Spitz Spitz NNP cord-010027-r0tl01kq 1785 14 naevi naevus NNS cord-010027-r0tl01kq 1785 15 while while IN cord-010027-r0tl01kq 1785 16 in in IN cord-010027-r0tl01kq 1785 17 the the DT cord-010027-r0tl01kq 1785 18 other other JJ cord-010027-r0tl01kq 1785 19 two two CD cord-010027-r0tl01kq 1785 20 it -PRON- PRP cord-010027-r0tl01kq 1785 21 shows show VBZ cord-010027-r0tl01kq 1785 22 week week NN cord-010027-r0tl01kq 1785 23 dermal dermal JJ cord-010027-r0tl01kq 1785 24 component component NN cord-010027-r0tl01kq 1785 25 . . . cord-010027-r0tl01kq 1786 1 HMB45 HMB45 NNP cord-010027-r0tl01kq 1786 2 is be VBZ cord-010027-r0tl01kq 1786 3 constantly constantly RB cord-010027-r0tl01kq 1786 4 positive positive JJ cord-010027-r0tl01kq 1786 5 at at IN cord-010027-r0tl01kq 1786 6 the the DT cord-010027-r0tl01kq 1786 7 deep deep JJ cord-010027-r0tl01kq 1786 8 dermal dermal JJ cord-010027-r0tl01kq 1786 9 component component NN cord-010027-r0tl01kq 1786 10 of of IN cord-010027-r0tl01kq 1786 11 melanoma melanoma NN cord-010027-r0tl01kq 1786 12 , , , cord-010027-r0tl01kq 1786 13 albeit albeit IN cord-010027-r0tl01kq 1786 14 the the DT cord-010027-r0tl01kq 1786 15 staining staining NN cord-010027-r0tl01kq 1786 16 intensity intensity NN cord-010027-r0tl01kq 1786 17 is be VBZ cord-010027-r0tl01kq 1786 18 variable variable JJ cord-010027-r0tl01kq 1786 19 . . . cord-010027-r0tl01kq 1787 1 The the DT cord-010027-r0tl01kq 1787 2 immunoprofile immunoprofile NN cord-010027-r0tl01kq 1787 3 of of IN cord-010027-r0tl01kq 1787 4 Spitz Spitz NNP cord-010027-r0tl01kq 1787 5 naevus naevus NN cord-010027-r0tl01kq 1787 6 is be VBZ cord-010027-r0tl01kq 1787 7 different different JJ cord-010027-r0tl01kq 1787 8 from from IN cord-010027-r0tl01kq 1787 9 that that DT cord-010027-r0tl01kq 1787 10 of of IN cord-010027-r0tl01kq 1787 11 a a DT cord-010027-r0tl01kq 1787 12 malignant malignant JJ cord-010027-r0tl01kq 1787 13 melanoma melanoma NN cord-010027-r0tl01kq 1787 14 . . . cord-010027-r0tl01kq 1788 1 A a DT cord-010027-r0tl01kq 1788 2 combination combination NN cord-010027-r0tl01kq 1788 3 of of IN cord-010027-r0tl01kq 1788 4 biological biological JJ cord-010027-r0tl01kq 1788 5 markers marker NNS cord-010027-r0tl01kq 1788 6 as as IN cord-010027-r0tl01kq 1788 7 ( ( -LRB- cord-010027-r0tl01kq 1788 8 p16 p16 NN cord-010027-r0tl01kq 1788 9 , , , cord-010027-r0tl01kq 1788 10 Ki67 Ki67 NNP cord-010027-r0tl01kq 1788 11 , , , cord-010027-r0tl01kq 1788 12 and and CC cord-010027-r0tl01kq 1788 13 HMB45 HMB45 NNP cord-010027-r0tl01kq 1788 14 ) ) -RRB- cord-010027-r0tl01kq 1788 15 , , , cord-010027-r0tl01kq 1788 16 can can MD cord-010027-r0tl01kq 1788 17 provide provide VB cord-010027-r0tl01kq 1788 18 a a DT cord-010027-r0tl01kq 1788 19 potential potential JJ cord-010027-r0tl01kq 1788 20 tool tool NN cord-010027-r0tl01kq 1788 21 to to TO cord-010027-r0tl01kq 1788 22 differentiate differentiate VB cord-010027-r0tl01kq 1788 23 between between IN cord-010027-r0tl01kq 1788 24 the the DT cord-010027-r0tl01kq 1788 25 two two CD cord-010027-r0tl01kq 1788 26 entities entity NNS cord-010027-r0tl01kq 1788 27 . . . cord-010027-r0tl01kq 1789 1 Nevertheless nevertheless RB cord-010027-r0tl01kq 1789 2 , , , cord-010027-r0tl01kq 1789 3 expanding expand VBG cord-010027-r0tl01kq 1789 4 the the DT cord-010027-r0tl01kq 1789 5 biomarker biomarker NN cord-010027-r0tl01kq 1789 6 repertoire repertoire NN cord-010027-r0tl01kq 1789 7 on on IN cord-010027-r0tl01kq 1789 8 a a DT cord-010027-r0tl01kq 1789 9 large large JJ cord-010027-r0tl01kq 1789 10 number number NN cord-010027-r0tl01kq 1789 11 of of IN cord-010027-r0tl01kq 1789 12 cases case NNS cord-010027-r0tl01kq 1789 13 is be VBZ cord-010027-r0tl01kq 1789 14 necessary necessary JJ cord-010027-r0tl01kq 1789 15 to to TO cord-010027-r0tl01kq 1789 16 further further RB cord-010027-r0tl01kq 1789 17 establish establish VB cord-010027-r0tl01kq 1789 18 a a DT cord-010027-r0tl01kq 1789 19 reliable reliable JJ cord-010027-r0tl01kq 1789 20 panel panel NN cord-010027-r0tl01kq 1789 21 to to TO cord-010027-r0tl01kq 1789 22 differentiate differentiate VB cord-010027-r0tl01kq 1789 23 among among IN cord-010027-r0tl01kq 1789 24 difficult difficult JJ cord-010027-r0tl01kq 1789 25 cases case NNS cord-010027-r0tl01kq 1789 26 . . . cord-010027-r0tl01kq 1790 1 Direct direct JJ cord-010027-r0tl01kq 1790 2 Immunofluorescence Immunofluorescence NNP cord-010027-r0tl01kq 1790 3 in in IN cord-010027-r0tl01kq 1790 4 a a DT cord-010027-r0tl01kq 1790 5 Tertiary Tertiary NNP cord-010027-r0tl01kq 1790 6 Referral Referral NNP cord-010027-r0tl01kq 1790 7 Centre Centre NNP cord-010027-r0tl01kq 1790 8 : : : cord-010027-r0tl01kq 1791 1 An an DT cord-010027-r0tl01kq 1791 2 Audit Audit NNP cord-010027-r0tl01kq 1791 3 of of IN cord-010027-r0tl01kq 1791 4 Local Local NNP cord-010027-r0tl01kq 1791 5 Guidelines Guidelines NNPS cord-010027-r0tl01kq 1791 6 and and CC cord-010027-r0tl01kq 1791 7 Usage Usage NNP cord-010027-r0tl01kq 1791 8 P P NNP cord-010027-r0tl01kq 1791 9 LJ LJ NNP cord-010027-r0tl01kq 1791 10 Lumsden Lumsden NNP cord-010027-r0tl01kq 1791 11 ; ; : cord-010027-r0tl01kq 1791 12 L L NNP cord-010027-r0tl01kq 1791 13 Motta Motta NNP cord-010027-r0tl01kq 1791 14 ; ; : cord-010027-r0tl01kq 1791 15 R R NNP cord-010027-r0tl01kq 1791 16 Green Green NNP cord-010027-r0tl01kq 1791 17 Salford Salford NNP cord-010027-r0tl01kq 1791 18 Royal Royal NNP cord-010027-r0tl01kq 1791 19 Hospital Hospital NNP cord-010027-r0tl01kq 1791 20 , , , cord-010027-r0tl01kq 1791 21 Salford Salford NNP cord-010027-r0tl01kq 1791 22 , , , cord-010027-r0tl01kq 1791 23 UK UK NNP cord-010027-r0tl01kq 1791 24 Direct direct JJ cord-010027-r0tl01kq 1791 25 immunofluorescence immunofluorescence NN cord-010027-r0tl01kq 1791 26 ( ( -LRB- cord-010027-r0tl01kq 1791 27 DIF DIF NNP cord-010027-r0tl01kq 1791 28 ) ) -RRB- cord-010027-r0tl01kq 1791 29 forms form VBZ cord-010027-r0tl01kq 1791 30 an an DT cord-010027-r0tl01kq 1791 31 important important JJ cord-010027-r0tl01kq 1791 32 and and CC cord-010027-r0tl01kq 1791 33 costly costly JJ cord-010027-r0tl01kq 1791 34 adjunct adjunct NN cord-010027-r0tl01kq 1791 35 to to IN cord-010027-r0tl01kq 1791 36 conventional conventional JJ cord-010027-r0tl01kq 1791 37 haematoxylin haematoxylin NN cord-010027-r0tl01kq 1791 38 and and CC cord-010027-r0tl01kq 1791 39 eosin eosin NNP cord-010027-r0tl01kq 1791 40 ( ( -LRB- cord-010027-r0tl01kq 1791 41 H&E H&E NNP cord-010027-r0tl01kq 1791 42 ) ) -RRB- cord-010027-r0tl01kq 1791 43 histology histology NN cord-010027-r0tl01kq 1791 44 in in IN cord-010027-r0tl01kq 1791 45 dermatopathology dermatopathology NN cord-010027-r0tl01kq 1791 46 , , , cord-010027-r0tl01kq 1791 47 particularly particularly RB cord-010027-r0tl01kq 1791 48 in in IN cord-010027-r0tl01kq 1791 49 bullous bullous JJ cord-010027-r0tl01kq 1791 50 diseases disease NNS cord-010027-r0tl01kq 1791 51 and and CC cord-010027-r0tl01kq 1791 52 other other JJ cord-010027-r0tl01kq 1791 53 immune immune NN cord-010027-r0tl01kq 1791 54 - - HYPH cord-010027-r0tl01kq 1791 55 mediated mediate VBN cord-010027-r0tl01kq 1791 56 diseases disease NNS cord-010027-r0tl01kq 1791 57 . . . cord-010027-r0tl01kq 1792 1 We -PRON- PRP cord-010027-r0tl01kq 1792 2 aim aim VBP cord-010027-r0tl01kq 1792 3 to to TO cord-010027-r0tl01kq 1792 4 assess assess VB cord-010027-r0tl01kq 1792 5 the the DT cord-010027-r0tl01kq 1792 6 usage usage NN cord-010027-r0tl01kq 1792 7 and and CC cord-010027-r0tl01kq 1792 8 diagnostic diagnostic JJ cord-010027-r0tl01kq 1792 9 yield yield NN cord-010027-r0tl01kq 1792 10 of of IN cord-010027-r0tl01kq 1792 11 DIF DIF NNP cord-010027-r0tl01kq 1792 12 in in IN cord-010027-r0tl01kq 1792 13 our -PRON- PRP$ cord-010027-r0tl01kq 1792 14 dermatopathology dermatopathology NN cord-010027-r0tl01kq 1792 15 department department NN cord-010027-r0tl01kq 1792 16 . . . cord-010027-r0tl01kq 1793 1 134 134 CD cord-010027-r0tl01kq 1793 2 requests request NNS cord-010027-r0tl01kq 1793 3 for for IN cord-010027-r0tl01kq 1793 4 DIF DIF NNP cord-010027-r0tl01kq 1793 5 on on IN cord-010027-r0tl01kq 1793 6 skin skin NN cord-010027-r0tl01kq 1793 7 biopsies biopsy NNS cord-010027-r0tl01kq 1793 8 received receive VBN cord-010027-r0tl01kq 1793 9 over over IN cord-010027-r0tl01kq 1793 10 a a DT cord-010027-r0tl01kq 1793 11 5 5 CD cord-010027-r0tl01kq 1793 12 month month NN cord-010027-r0tl01kq 1793 13 period period NN cord-010027-r0tl01kq 1793 14 met meet VBD cord-010027-r0tl01kq 1793 15 the the DT cord-010027-r0tl01kq 1793 16 inclusion inclusion NN cord-010027-r0tl01kq 1793 17 criteria criterion NNS cord-010027-r0tl01kq 1793 18 . . . cord-010027-r0tl01kq 1794 1 Each each DT cord-010027-r0tl01kq 1794 2 individual individual JJ cord-010027-r0tl01kq 1794 3 report report NN cord-010027-r0tl01kq 1794 4 was be VBD cord-010027-r0tl01kq 1794 5 assessed assess VBN cord-010027-r0tl01kq 1794 6 with with IN cord-010027-r0tl01kq 1794 7 regard regard NN cord-010027-r0tl01kq 1794 8 to to IN cord-010027-r0tl01kq 1794 9 the the DT cord-010027-r0tl01kq 1794 10 indication indication NN cord-010027-r0tl01kq 1794 11 for for IN cord-010027-r0tl01kq 1794 12 DIF DIF NNP cord-010027-r0tl01kq 1794 13 , , , cord-010027-r0tl01kq 1794 14 whether whether IN cord-010027-r0tl01kq 1794 15 DIF DIF NNP cord-010027-r0tl01kq 1794 16 was be VBD cord-010027-r0tl01kq 1794 17 deemed deem VBN cord-010027-r0tl01kq 1794 18 to to TO cord-010027-r0tl01kq 1794 19 be be VB cord-010027-r0tl01kq 1794 20 indicated indicate VBN cord-010027-r0tl01kq 1794 21 or or CC cord-010027-r0tl01kq 1794 22 not not RB cord-010027-r0tl01kq 1794 23 indicated indicate VBN cord-010027-r0tl01kq 1794 24 on on IN cord-010027-r0tl01kq 1794 25 assessment assessment NN cord-010027-r0tl01kq 1794 26 of of IN cord-010027-r0tl01kq 1794 27 the the DT cord-010027-r0tl01kq 1794 28 clinical clinical JJ cord-010027-r0tl01kq 1794 29 history history NN cord-010027-r0tl01kq 1794 30 supplied supply VBN cord-010027-r0tl01kq 1794 31 on on IN cord-010027-r0tl01kq 1794 32 the the DT cord-010027-r0tl01kq 1794 33 request request NN cord-010027-r0tl01kq 1794 34 card card NN cord-010027-r0tl01kq 1794 35 , , , cord-010027-r0tl01kq 1794 36 the the DT cord-010027-r0tl01kq 1794 37 results result NNS cord-010027-r0tl01kq 1794 38 of of IN cord-010027-r0tl01kq 1794 39 DIF DIF NNP cord-010027-r0tl01kq 1794 40 and and CC cord-010027-r0tl01kq 1794 41 whether whether IN cord-010027-r0tl01kq 1794 42 DIF DIF NNP cord-010027-r0tl01kq 1794 43 was be VBD cord-010027-r0tl01kq 1794 44 contributory contributory JJ cord-010027-r0tl01kq 1794 45 to to IN cord-010027-r0tl01kq 1794 46 the the DT cord-010027-r0tl01kq 1794 47 final final JJ cord-010027-r0tl01kq 1794 48 diagnosis diagnosis NN cord-010027-r0tl01kq 1794 49 . . . cord-010027-r0tl01kq 1795 1 We -PRON- PRP cord-010027-r0tl01kq 1795 2 also also RB cord-010027-r0tl01kq 1795 3 collected collect VBD cord-010027-r0tl01kq 1795 4 data datum NNS cord-010027-r0tl01kq 1795 5 on on IN cord-010027-r0tl01kq 1795 6 the the DT cord-010027-r0tl01kq 1795 7 usage usage NN cord-010027-r0tl01kq 1795 8 of of IN cord-010027-r0tl01kq 1795 9 DIF DIF NNP cord-010027-r0tl01kq 1795 10 over over IN cord-010027-r0tl01kq 1795 11 the the DT cord-010027-r0tl01kq 1795 12 last last JJ cord-010027-r0tl01kq 1795 13 2 2 CD cord-010027-r0tl01kq 1795 14 years year NNS cord-010027-r0tl01kq 1795 15 to to TO cord-010027-r0tl01kq 1795 16 assess assess VB cord-010027-r0tl01kq 1795 17 changes change NNS cord-010027-r0tl01kq 1795 18 in in IN cord-010027-r0tl01kq 1795 19 practice practice NN cord-010027-r0tl01kq 1795 20 . . . cord-010027-r0tl01kq 1796 1 All all DT cord-010027-r0tl01kq 1796 2 134 134 CD cord-010027-r0tl01kq 1796 3 requests request NNS cord-010027-r0tl01kq 1796 4 for for IN cord-010027-r0tl01kq 1796 5 DIF DIF NNP cord-010027-r0tl01kq 1796 6 were be VBD cord-010027-r0tl01kq 1796 7 granted grant VBN cord-010027-r0tl01kq 1796 8 in in IN cord-010027-r0tl01kq 1796 9 line line NN cord-010027-r0tl01kq 1796 10 with with IN cord-010027-r0tl01kq 1796 11 current current JJ cord-010027-r0tl01kq 1796 12 departmental departmental JJ cord-010027-r0tl01kq 1796 13 policy policy NN cord-010027-r0tl01kq 1796 14 . . . cord-010027-r0tl01kq 1797 1 The the DT cord-010027-r0tl01kq 1797 2 indication indication NN cord-010027-r0tl01kq 1797 3 categories category NNS cord-010027-r0tl01kq 1797 4 were be VBD cord-010027-r0tl01kq 1797 5 divided divide VBN cord-010027-r0tl01kq 1797 6 as as IN cord-010027-r0tl01kq 1797 7 follows follow VBZ cord-010027-r0tl01kq 1797 8 : : : cord-010027-r0tl01kq 1797 9 bullous bullous JJ cord-010027-r0tl01kq 1797 10 41 41 CD cord-010027-r0tl01kq 1797 11 , , , cord-010027-r0tl01kq 1797 12 alopecia alopecia NNP cord-010027-r0tl01kq 1797 13 4 4 CD cord-010027-r0tl01kq 1797 14 , , , cord-010027-r0tl01kq 1797 15 lupus lupus NN cord-010027-r0tl01kq 1797 16 32 32 CD cord-010027-r0tl01kq 1797 17 , , , cord-010027-r0tl01kq 1797 18 vasculitis vasculitis JJ cord-010027-r0tl01kq 1797 19 23 23 CD cord-010027-r0tl01kq 1797 20 , , , cord-010027-r0tl01kq 1797 21 dermatitis dermatitis NN cord-010027-r0tl01kq 1797 22 herpetiformis herpetiformis NNP cord-010027-r0tl01kq 1797 23 ( ( -LRB- cord-010027-r0tl01kq 1797 24 DH DH NNP cord-010027-r0tl01kq 1797 25 ) ) -RRB- cord-010027-r0tl01kq 1798 1 15 15 CD cord-010027-r0tl01kq 1798 2 and and CC cord-010027-r0tl01kq 1798 3 ' ' `` cord-010027-r0tl01kq 1798 4 other other JJ cord-010027-r0tl01kq 1798 5 ' ' POS cord-010027-r0tl01kq 1798 6 19 19 CD cord-010027-r0tl01kq 1798 7 . . . cord-010027-r0tl01kq 1799 1 All all DT cord-010027-r0tl01kq 1799 2 requests request NNS cord-010027-r0tl01kq 1799 3 for for IN cord-010027-r0tl01kq 1799 4 DIF DIF NNP cord-010027-r0tl01kq 1799 5 were be VBD cord-010027-r0tl01kq 1799 6 deemed deem VBN cord-010027-r0tl01kq 1799 7 to to TO cord-010027-r0tl01kq 1799 8 be be VB cord-010027-r0tl01kq 1799 9 indicated indicate VBN cord-010027-r0tl01kq 1799 10 in in IN cord-010027-r0tl01kq 1799 11 both both CC cord-010027-r0tl01kq 1799 12 the the DT cord-010027-r0tl01kq 1799 13 bullous bullous JJ cord-010027-r0tl01kq 1799 14 and and CC cord-010027-r0tl01kq 1799 15 DH DH NNP cord-010027-r0tl01kq 1799 16 categories category NNS cord-010027-r0tl01kq 1799 17 by by IN cord-010027-r0tl01kq 1799 18 our -PRON- PRP$ cord-010027-r0tl01kq 1799 19 panel panel NN cord-010027-r0tl01kq 1799 20 , , , cord-010027-r0tl01kq 1799 21 but but CC cord-010027-r0tl01kq 1799 22 indicated indicate VBD cord-010027-r0tl01kq 1799 23 requests request NNS cord-010027-r0tl01kq 1799 24 varied varied JJ cord-010027-r0tl01kq 1799 25 from from IN cord-010027-r0tl01kq 1799 26 8.7 8.7 CD cord-010027-r0tl01kq 1799 27 % % NN cord-010027-r0tl01kq 1799 28 to to IN cord-010027-r0tl01kq 1799 29 50 50 CD cord-010027-r0tl01kq 1799 30 % % NN cord-010027-r0tl01kq 1799 31 in in IN cord-010027-r0tl01kq 1799 32 the the DT cord-010027-r0tl01kq 1799 33 remaining remain VBG cord-010027-r0tl01kq 1799 34 categories category NNS cord-010027-r0tl01kq 1799 35 . . . cord-010027-r0tl01kq 1800 1 In in IN cord-010027-r0tl01kq 1800 2 45.5 45.5 CD cord-010027-r0tl01kq 1800 3 % % NN cord-010027-r0tl01kq 1800 4 ( ( -LRB- cord-010027-r0tl01kq 1800 5 61 61 CD cord-010027-r0tl01kq 1800 6 out out IN cord-010027-r0tl01kq 1800 7 of of IN cord-010027-r0tl01kq 1800 8 134 134 CD cord-010027-r0tl01kq 1800 9 ) ) -RRB- cord-010027-r0tl01kq 1800 10 of of IN cord-010027-r0tl01kq 1800 11 cases case NNS cord-010027-r0tl01kq 1800 12 DIF DIF NNP cord-010027-r0tl01kq 1800 13 was be VBD cord-010027-r0tl01kq 1800 14 deemed deem VBN cord-010027-r0tl01kq 1800 15 to to TO cord-010027-r0tl01kq 1800 16 be be VB cord-010027-r0tl01kq 1800 17 contributory contributory JJ cord-010027-r0tl01kq 1800 18 to to IN cord-010027-r0tl01kq 1800 19 the the DT cord-010027-r0tl01kq 1800 20 final final JJ cord-010027-r0tl01kq 1800 21 diagnosis diagnosis NN cord-010027-r0tl01kq 1800 22 . . . cord-010027-r0tl01kq 1801 1 Our -PRON- PRP$ cord-010027-r0tl01kq 1801 2 analysis analysis NN cord-010027-r0tl01kq 1801 3 also also RB cord-010027-r0tl01kq 1801 4 showed show VBD cord-010027-r0tl01kq 1801 5 that that IN cord-010027-r0tl01kq 1801 6 usage usage NN cord-010027-r0tl01kq 1801 7 of of IN cord-010027-r0tl01kq 1801 8 DIF DIF NNP cord-010027-r0tl01kq 1801 9 in in IN cord-010027-r0tl01kq 1801 10 our -PRON- PRP$ cord-010027-r0tl01kq 1801 11 department department NN cord-010027-r0tl01kq 1801 12 is be VBZ cord-010027-r0tl01kq 1801 13 escalating escalate VBG cord-010027-r0tl01kq 1801 14 , , , cord-010027-r0tl01kq 1801 15 with with IN cord-010027-r0tl01kq 1801 16 a a DT cord-010027-r0tl01kq 1801 17 23.2 23.2 CD cord-010027-r0tl01kq 1801 18 % % NN cord-010027-r0tl01kq 1801 19 increase increase NN cord-010027-r0tl01kq 1801 20 in in IN cord-010027-r0tl01kq 1801 21 requests request NNS cord-010027-r0tl01kq 1801 22 from from IN cord-010027-r0tl01kq 1801 23 2013 2013 CD cord-010027-r0tl01kq 1801 24 to to IN cord-010027-r0tl01kq 1801 25 2014 2014 CD cord-010027-r0tl01kq 1801 26 . . . cord-010027-r0tl01kq 1802 1 Our -PRON- PRP$ cord-010027-r0tl01kq 1802 2 departmental departmental JJ cord-010027-r0tl01kq 1802 3 policy policy NN cord-010027-r0tl01kq 1802 4 with with IN cord-010027-r0tl01kq 1802 5 regard regard NN cord-010027-r0tl01kq 1802 6 to to IN cord-010027-r0tl01kq 1802 7 DIF DIF NNP cord-010027-r0tl01kq 1802 8 is be VBZ cord-010027-r0tl01kq 1802 9 inclusive inclusive JJ cord-010027-r0tl01kq 1802 10 and and CC cord-010027-r0tl01kq 1802 11 operates operate VBZ cord-010027-r0tl01kq 1802 12 solely solely RB cord-010027-r0tl01kq 1802 13 on on IN cord-010027-r0tl01kq 1802 14 the the DT cord-010027-r0tl01kq 1802 15 basis basis NN cord-010027-r0tl01kq 1802 16 of of IN cord-010027-r0tl01kq 1802 17 clinician clinician NN cord-010027-r0tl01kq 1802 18 request request NN cord-010027-r0tl01kq 1802 19 . . . cord-010027-r0tl01kq 1803 1 With with IN cord-010027-r0tl01kq 1803 2 the the DT cord-010027-r0tl01kq 1803 3 increasing increase VBG cord-010027-r0tl01kq 1803 4 usage usage NN cord-010027-r0tl01kq 1803 5 of of IN cord-010027-r0tl01kq 1803 6 DIF DIF NNP cord-010027-r0tl01kq 1803 7 , , , cord-010027-r0tl01kq 1803 8 established establish VBD cord-010027-r0tl01kq 1803 9 departmental departmental JJ cord-010027-r0tl01kq 1803 10 guidelines guideline NNS cord-010027-r0tl01kq 1803 11 and/or and/or CC cord-010027-r0tl01kq 1803 12 a a DT cord-010027-r0tl01kq 1803 13 protocol protocol NN cord-010027-r0tl01kq 1803 14 for for IN cord-010027-r0tl01kq 1803 15 DIF DIF NNP cord-010027-r0tl01kq 1803 16 usage usage NN cord-010027-r0tl01kq 1803 17 should should MD cord-010027-r0tl01kq 1803 18 be be VB cord-010027-r0tl01kq 1803 19 mutually mutually RB cord-010027-r0tl01kq 1803 20 agreed agree VBN cord-010027-r0tl01kq 1803 21 with with IN cord-010027-r0tl01kq 1803 22 dermatology dermatology NN cord-010027-r0tl01kq 1803 23 colleagues colleague NNS cord-010027-r0tl01kq 1803 24 in in IN cord-010027-r0tl01kq 1803 25 order order NN cord-010027-r0tl01kq 1803 26 to to TO cord-010027-r0tl01kq 1803 27 ensure ensure VB cord-010027-r0tl01kq 1803 28 effective effective JJ cord-010027-r0tl01kq 1803 29 use use NN cord-010027-r0tl01kq 1803 30 of of IN cord-010027-r0tl01kq 1803 31 this this DT cord-010027-r0tl01kq 1803 32 expensive expensive JJ cord-010027-r0tl01kq 1803 33 test test NN cord-010027-r0tl01kq 1803 34 . . . cord-010027-r0tl01kq 1804 1 Overview Overview NNP cord-010027-r0tl01kq 1804 2 of of IN cord-010027-r0tl01kq 1804 3 Merkel Merkel NNP cord-010027-r0tl01kq 1804 4 Cell Cell NNP cord-010027-r0tl01kq 1804 5 Carcinoma Carcinoma NNP cord-010027-r0tl01kq 1804 6 in in IN cord-010027-r0tl01kq 1804 7 an an DT cord-010027-r0tl01kq 1804 8 Irish irish JJ cord-010027-r0tl01kq 1804 9 Population Population NNP cord-010027-r0tl01kq 1804 10 P P NNP cord-010027-r0tl01kq 1804 11 A A NNP cord-010027-r0tl01kq 1804 12 Cooper Cooper NNP cord-010027-r0tl01kq 1804 13 1 1 CD cord-010027-r0tl01kq 1804 14 ; ; : cord-010027-r0tl01kq 1804 15 J J NNP cord-010027-r0tl01kq 1804 16 Thorne Thorne NNP cord-010027-r0tl01kq 1804 17 2 2 CD cord-010027-r0tl01kq 1804 18 1 1 CD cord-010027-r0tl01kq 1804 19 Royal Royal NNP cord-010027-r0tl01kq 1804 20 College College NNP cord-010027-r0tl01kq 1804 21 of of IN cord-010027-r0tl01kq 1804 22 Surgeons Surgeons NNPS cord-010027-r0tl01kq 1804 23 in in IN cord-010027-r0tl01kq 1804 24 Ireland Ireland NNP cord-010027-r0tl01kq 1804 25 , , , cord-010027-r0tl01kq 1804 26 Dublin Dublin NNP cord-010027-r0tl01kq 1804 27 , , , cord-010027-r0tl01kq 1804 28 Ireland Ireland NNP cord-010027-r0tl01kq 1804 29 ; ; : cord-010027-r0tl01kq 1804 30 2 2 CD cord-010027-r0tl01kq 1804 31 Beaumont Beaumont NNP cord-010027-r0tl01kq 1804 32 Hospital Hospital NNP cord-010027-r0tl01kq 1804 33 , , , cord-010027-r0tl01kq 1804 34 Dublin Dublin NNP cord-010027-r0tl01kq 1804 35 , , , cord-010027-r0tl01kq 1804 36 Ireland Ireland NNP cord-010027-r0tl01kq 1804 37 Purpose Purpose NNP cord-010027-r0tl01kq 1804 38 of of IN cord-010027-r0tl01kq 1804 39 Study Study NNP cord-010027-r0tl01kq 1804 40 : : : cord-010027-r0tl01kq 1804 41 Merkel Merkel NNP cord-010027-r0tl01kq 1804 42 cell cell NN cord-010027-r0tl01kq 1804 43 carcinoma carcinoma NN cord-010027-r0tl01kq 1804 44 ( ( -LRB- cord-010027-r0tl01kq 1804 45 MCC MCC NNP cord-010027-r0tl01kq 1804 46 ) ) -RRB- cord-010027-r0tl01kq 1804 47 is be VBZ cord-010027-r0tl01kq 1804 48 an an DT cord-010027-r0tl01kq 1804 49 uncommon uncommon JJ cord-010027-r0tl01kq 1804 50 but but CC cord-010027-r0tl01kq 1804 51 highly highly RB cord-010027-r0tl01kq 1804 52 aggressive aggressive JJ cord-010027-r0tl01kq 1804 53 primary primary JJ cord-010027-r0tl01kq 1804 54 cutaneous cutaneous JJ cord-010027-r0tl01kq 1804 55 malignancy malignancy NN cord-010027-r0tl01kq 1804 56 of of IN cord-010027-r0tl01kq 1804 57 neuroendocrine neuroendocrine JJ cord-010027-r0tl01kq 1804 58 cells cell NNS cord-010027-r0tl01kq 1804 59 with with IN cord-010027-r0tl01kq 1804 60 a a DT cord-010027-r0tl01kq 1804 61 propensity propensity NN cord-010027-r0tl01kq 1804 62 for for IN cord-010027-r0tl01kq 1804 63 regional regional JJ cord-010027-r0tl01kq 1804 64 and and CC cord-010027-r0tl01kq 1804 65 distal distal JJ cord-010027-r0tl01kq 1804 66 metastases metastasis NNS cord-010027-r0tl01kq 1804 67 . . . cord-010027-r0tl01kq 1805 1 Due due IN cord-010027-r0tl01kq 1805 2 to to IN cord-010027-r0tl01kq 1805 3 it -PRON- PRP cord-010027-r0tl01kq 1805 4 's be VBZ cord-010027-r0tl01kq 1805 5 rarity rarity NN cord-010027-r0tl01kq 1805 6 , , , cord-010027-r0tl01kq 1805 7 information information NN cord-010027-r0tl01kq 1805 8 relating relate VBG cord-010027-r0tl01kq 1805 9 to to IN cord-010027-r0tl01kq 1805 10 it -PRON- PRP cord-010027-r0tl01kq 1805 11 's be VBZ cord-010027-r0tl01kq 1805 12 epidemiology epidemiology NN cord-010027-r0tl01kq 1805 13 in in IN cord-010027-r0tl01kq 1805 14 an an DT cord-010027-r0tl01kq 1805 15 Irish irish JJ cord-010027-r0tl01kq 1805 16 population population NN cord-010027-r0tl01kq 1805 17 is be VBZ cord-010027-r0tl01kq 1805 18 limited limit VBN cord-010027-r0tl01kq 1805 19 , , , cord-010027-r0tl01kq 1805 20 mainly mainly RB cord-010027-r0tl01kq 1805 21 owing owe VBG cord-010027-r0tl01kq 1805 22 to to IN cord-010027-r0tl01kq 1805 23 difficulty difficulty NN cord-010027-r0tl01kq 1805 24 in in IN cord-010027-r0tl01kq 1805 25 gathering gather VBG cord-010027-r0tl01kq 1805 26 large large JJ cord-010027-r0tl01kq 1805 27 patient patient JJ cord-010027-r0tl01kq 1805 28 series series NN cord-010027-r0tl01kq 1805 29 . . . cord-010027-r0tl01kq 1806 1 Our -PRON- PRP$ cord-010027-r0tl01kq 1806 2 aim aim NN cord-010027-r0tl01kq 1806 3 was be VBD cord-010027-r0tl01kq 1806 4 to to TO cord-010027-r0tl01kq 1806 5 identify identify VB cord-010027-r0tl01kq 1806 6 all all DT cord-010027-r0tl01kq 1806 7 cases case NNS cord-010027-r0tl01kq 1806 8 of of IN cord-010027-r0tl01kq 1806 9 MCC MCC NNP cord-010027-r0tl01kq 1806 10 in in IN cord-010027-r0tl01kq 1806 11 our -PRON- PRP$ cord-010027-r0tl01kq 1806 12 institution institution NN cord-010027-r0tl01kq 1806 13 in in IN cord-010027-r0tl01kq 1806 14 a a DT cord-010027-r0tl01kq 1806 15 defined define VBN cord-010027-r0tl01kq 1806 16 10 10 CD cord-010027-r0tl01kq 1806 17 year year NN cord-010027-r0tl01kq 1806 18 period period NN cord-010027-r0tl01kq 1806 19 and and CC cord-010027-r0tl01kq 1806 20 review review VB cord-010027-r0tl01kq 1806 21 the the DT cord-010027-r0tl01kq 1806 22 patient patient JJ cord-010027-r0tl01kq 1806 23 demographics demographic NNS cord-010027-r0tl01kq 1806 24 compared compare VBN cord-010027-r0tl01kq 1806 25 to to IN cord-010027-r0tl01kq 1806 26 internationally internationally RB cord-010027-r0tl01kq 1806 27 available available JJ cord-010027-r0tl01kq 1806 28 data datum NNS cord-010027-r0tl01kq 1806 29 . . . cord-010027-r0tl01kq 1807 1 A a DT cord-010027-r0tl01kq 1807 2 search search NN cord-010027-r0tl01kq 1807 3 was be VBD cord-010027-r0tl01kq 1807 4 carried carry VBN cord-010027-r0tl01kq 1807 5 out out RP cord-010027-r0tl01kq 1807 6 on on IN cord-010027-r0tl01kq 1807 7 the the DT cord-010027-r0tl01kq 1807 8 hospital hospital NN cord-010027-r0tl01kq 1807 9 laboratory laboratory NN cord-010027-r0tl01kq 1807 10 system system NN cord-010027-r0tl01kq 1807 11 to to TO cord-010027-r0tl01kq 1807 12 identify identify VB cord-010027-r0tl01kq 1807 13 all all DT cord-010027-r0tl01kq 1807 14 cases case NNS cord-010027-r0tl01kq 1807 15 of of IN cord-010027-r0tl01kq 1807 16 MCC MCC NNP cord-010027-r0tl01kq 1807 17 from from IN cord-010027-r0tl01kq 1807 18 01/01/2005 01/01/2005 CD cord-010027-r0tl01kq 1807 19 to to IN cord-010027-r0tl01kq 1807 20 21/12/2014 21/12/2014 CD cord-010027-r0tl01kq 1807 21 . . . cord-010027-r0tl01kq 1808 1 All all DT cord-010027-r0tl01kq 1808 2 histology histology NN cord-010027-r0tl01kq 1808 3 reports report NNS cord-010027-r0tl01kq 1808 4 were be VBD cord-010027-r0tl01kq 1808 5 reviewed review VBN cord-010027-r0tl01kq 1808 6 and and CC cord-010027-r0tl01kq 1808 7 any any DT cord-010027-r0tl01kq 1808 8 information information NN cord-010027-r0tl01kq 1808 9 pertaining pertain VBG cord-010027-r0tl01kq 1808 10 to to IN cord-010027-r0tl01kq 1808 11 patient patient JJ cord-010027-r0tl01kq 1808 12 demographics demographic NNS cord-010027-r0tl01kq 1808 13 was be VBD cord-010027-r0tl01kq 1808 14 recorded record VBN cord-010027-r0tl01kq 1808 15 in in IN cord-010027-r0tl01kq 1808 16 an an DT cord-010027-r0tl01kq 1808 17 excel excel JJ cord-010027-r0tl01kq 1808 18 spreadsheet spreadsheet NN cord-010027-r0tl01kq 1808 19 . . . cord-010027-r0tl01kq 1809 1 A a DT cord-010027-r0tl01kq 1809 2 literature literature NN cord-010027-r0tl01kq 1809 3 review review NN cord-010027-r0tl01kq 1809 4 was be VBD cord-010027-r0tl01kq 1809 5 performed perform VBN cord-010027-r0tl01kq 1809 6 relating relate VBG cord-010027-r0tl01kq 1809 7 to to IN cord-010027-r0tl01kq 1809 8 the the DT cord-010027-r0tl01kq 1809 9 patient patient JJ cord-010027-r0tl01kq 1809 10 profile profile NN cord-010027-r0tl01kq 1809 11 of of IN cord-010027-r0tl01kq 1809 12 MCC MCC NNP cord-010027-r0tl01kq 1809 13 internationally internationally RB cord-010027-r0tl01kq 1809 14 and and CC cord-010027-r0tl01kq 1809 15 the the DT cord-010027-r0tl01kq 1809 16 results result NNS cord-010027-r0tl01kq 1809 17 were be VBD cord-010027-r0tl01kq 1809 18 compared compare VBN cord-010027-r0tl01kq 1809 19 . . . cord-010027-r0tl01kq 1810 1 Results result NNS cord-010027-r0tl01kq 1810 2 : : : cord-010027-r0tl01kq 1811 1 A a DT cord-010027-r0tl01kq 1811 2 total total NN cord-010027-r0tl01kq 1811 3 of of IN cord-010027-r0tl01kq 1811 4 33 33 CD cord-010027-r0tl01kq 1811 5 reports report NNS cord-010027-r0tl01kq 1811 6 pertaining pertain VBG cord-010027-r0tl01kq 1811 7 to to IN cord-010027-r0tl01kq 1811 8 25 25 CD cord-010027-r0tl01kq 1811 9 individual individual JJ cord-010027-r0tl01kq 1811 10 patients patient NNS cord-010027-r0tl01kq 1811 11 were be VBD cord-010027-r0tl01kq 1811 12 recovered recover VBN cord-010027-r0tl01kq 1811 13 . . . cord-010027-r0tl01kq 1812 1 All all DT cord-010027-r0tl01kq 1812 2 patients patient NNS cord-010027-r0tl01kq 1812 3 were be VBD cord-010027-r0tl01kq 1812 4 of of IN cord-010027-r0tl01kq 1812 5 Caucasian caucasian JJ cord-010027-r0tl01kq 1812 6 Irish irish JJ cord-010027-r0tl01kq 1812 7 ethnicity ethnicity NN cord-010027-r0tl01kq 1812 8 . . . cord-010027-r0tl01kq 1813 1 The the DT cord-010027-r0tl01kq 1813 2 incidence incidence NN cord-010027-r0tl01kq 1813 3 of of IN cord-010027-r0tl01kq 1813 4 MCC MCC NNP cord-010027-r0tl01kq 1813 5 was be VBD cord-010027-r0tl01kq 1813 6 higher high JJR cord-010027-r0tl01kq 1813 7 in in IN cord-010027-r0tl01kq 1813 8 men man NNS cord-010027-r0tl01kq 1813 9 ( ( -LRB- cord-010027-r0tl01kq 1813 10 56 56 CD cord-010027-r0tl01kq 1813 11 % % NN cord-010027-r0tl01kq 1813 12 of of IN cord-010027-r0tl01kq 1813 13 cases case NNS cord-010027-r0tl01kq 1813 14 , , , cord-010027-r0tl01kq 1813 15 n=14 n=14 JJ cord-010027-r0tl01kq 1813 16 ) ) -RRB- cord-010027-r0tl01kq 1813 17 than than IN cord-010027-r0tl01kq 1813 18 women woman NNS cord-010027-r0tl01kq 1813 19 . . . cord-010027-r0tl01kq 1814 1 The the DT cord-010027-r0tl01kq 1814 2 median median JJ cord-010027-r0tl01kq 1814 3 age age NN cord-010027-r0tl01kq 1814 4 at at IN cord-010027-r0tl01kq 1814 5 diagnosis diagnosis NN cord-010027-r0tl01kq 1814 6 was be VBD cord-010027-r0tl01kq 1814 7 80 80 CD cord-010027-r0tl01kq 1814 8 years year NNS cord-010027-r0tl01kq 1815 1 ( ( -LRB- cord-010027-r0tl01kq 1815 2 range range NN cord-010027-r0tl01kq 1815 3 57 57 CD cord-010027-r0tl01kq 1815 4 - - SYM cord-010027-r0tl01kq 1815 5 90 90 CD cord-010027-r0tl01kq 1815 6 ) ) -RRB- cord-010027-r0tl01kq 1815 7 . . . cord-010027-r0tl01kq 1816 1 Men man NNS cord-010027-r0tl01kq 1816 2 presented present VBN cord-010027-r0tl01kq 1816 3 at at IN cord-010027-r0tl01kq 1816 4 an an DT cord-010027-r0tl01kq 1816 5 earlier early JJR cord-010027-r0tl01kq 1816 6 age age NN cord-010027-r0tl01kq 1816 7 ( ( -LRB- cord-010027-r0tl01kq 1816 8 median median NN cord-010027-r0tl01kq 1816 9 78 78 CD cord-010027-r0tl01kq 1816 10 years year NNS cord-010027-r0tl01kq 1816 11 ) ) -RRB- cord-010027-r0tl01kq 1816 12 than than IN cord-010027-r0tl01kq 1816 13 women woman NNS cord-010027-r0tl01kq 1816 14 ( ( -LRB- cord-010027-r0tl01kq 1816 15 median median JJ cord-010027-r0tl01kq 1816 16 83 83 CD cord-010027-r0tl01kq 1816 17 years year NNS cord-010027-r0tl01kq 1816 18 ) ) -RRB- cord-010027-r0tl01kq 1816 19 . . . cord-010027-r0tl01kq 1817 1 Regarding regard VBG cord-010027-r0tl01kq 1817 2 the the DT cord-010027-r0tl01kq 1817 3 anatomic anatomic JJ cord-010027-r0tl01kq 1817 4 site site NN cord-010027-r0tl01kq 1817 5 of of IN cord-010027-r0tl01kq 1817 6 the the DT cord-010027-r0tl01kq 1817 7 tumours tumour NNS cord-010027-r0tl01kq 1817 8 , , , cord-010027-r0tl01kq 1817 9 64 64 CD cord-010027-r0tl01kq 1817 10 % % NN cord-010027-r0tl01kq 1817 11 ( ( -LRB- cord-010027-r0tl01kq 1817 12 n=16 n=16 NNP cord-010027-r0tl01kq 1817 13 ) ) -RRB- cord-010027-r0tl01kq 1817 14 were be VBD cord-010027-r0tl01kq 1817 15 on on IN cord-010027-r0tl01kq 1817 16 the the DT cord-010027-r0tl01kq 1817 17 head head NN cord-010027-r0tl01kq 1817 18 or or CC cord-010027-r0tl01kq 1817 19 face face NN cord-010027-r0tl01kq 1817 20 , , , cord-010027-r0tl01kq 1817 21 20 20 CD cord-010027-r0tl01kq 1817 22 % % NN cord-010027-r0tl01kq 1817 23 ( ( -LRB- cord-010027-r0tl01kq 1817 24 n=5 n=5 NNP cord-010027-r0tl01kq 1817 25 ) ) -RRB- cord-010027-r0tl01kq 1817 26 were be VBD cord-010027-r0tl01kq 1817 27 on on IN cord-010027-r0tl01kq 1817 28 the the DT cord-010027-r0tl01kq 1817 29 lower low JJR cord-010027-r0tl01kq 1817 30 limb limb NN cord-010027-r0tl01kq 1817 31 and and CC cord-010027-r0tl01kq 1817 32 12 12 CD cord-010027-r0tl01kq 1817 33 % % NN cord-010027-r0tl01kq 1817 34 ( ( -LRB- cord-010027-r0tl01kq 1817 35 n=3 n=3 NN cord-010027-r0tl01kq 1817 36 ) ) -RRB- cord-010027-r0tl01kq 1817 37 were be VBD cord-010027-r0tl01kq 1817 38 on on IN cord-010027-r0tl01kq 1817 39 the the DT cord-010027-r0tl01kq 1817 40 upper upper JJ cord-010027-r0tl01kq 1817 41 limb limb NN cord-010027-r0tl01kq 1817 42 . . . cord-010027-r0tl01kq 1818 1 All all DT cord-010027-r0tl01kq 1818 2 were be VBD cord-010027-r0tl01kq 1818 3 on on IN cord-010027-r0tl01kq 1818 4 sun sun NN cord-010027-r0tl01kq 1818 5 - - HYPH cord-010027-r0tl01kq 1818 6 exposed expose VBN cord-010027-r0tl01kq 1818 7 sites site NNS cord-010027-r0tl01kq 1818 8 . . . cord-010027-r0tl01kq 1819 1 Of of IN cord-010027-r0tl01kq 1819 2 note note NN cord-010027-r0tl01kq 1819 3 , , , cord-010027-r0tl01kq 1819 4 the the DT cord-010027-r0tl01kq 1819 5 majority majority NN cord-010027-r0tl01kq 1819 6 of of IN cord-010027-r0tl01kq 1819 7 tumours tumour NNS cord-010027-r0tl01kq 1819 8 in in IN cord-010027-r0tl01kq 1819 9 the the DT cord-010027-r0tl01kq 1819 10 male male JJ cord-010027-r0tl01kq 1819 11 population population NN cord-010027-r0tl01kq 1819 12 were be VBD cord-010027-r0tl01kq 1819 13 on on IN cord-010027-r0tl01kq 1819 14 the the DT cord-010027-r0tl01kq 1819 15 head head NN cord-010027-r0tl01kq 1819 16 ( ( -LRB- cord-010027-r0tl01kq 1819 17 78.6 78.6 CD cord-010027-r0tl01kq 1819 18 % % NN cord-010027-r0tl01kq 1819 19 , , , cord-010027-r0tl01kq 1819 20 n=11 n=11 NNP cord-010027-r0tl01kq 1819 21 ) ) -RRB- cord-010027-r0tl01kq 1819 22 , , , cord-010027-r0tl01kq 1819 23 while while IN cord-010027-r0tl01kq 1819 24 the the DT cord-010027-r0tl01kq 1819 25 female female JJ cord-010027-r0tl01kq 1819 26 population population NN cord-010027-r0tl01kq 1819 27 showed show VBD cord-010027-r0tl01kq 1819 28 an an DT cord-010027-r0tl01kq 1819 29 equal equal JJ cord-010027-r0tl01kq 1819 30 distribution distribution NN cord-010027-r0tl01kq 1819 31 between between IN cord-010027-r0tl01kq 1819 32 the the DT cord-010027-r0tl01kq 1819 33 head head NN cord-010027-r0tl01kq 1819 34 and and CC cord-010027-r0tl01kq 1819 35 the the DT cord-010027-r0tl01kq 1819 36 lower low JJR cord-010027-r0tl01kq 1819 37 limbs limb NNS cord-010027-r0tl01kq 1819 38 ( ( -LRB- cord-010027-r0tl01kq 1819 39 45 45 CD cord-010027-r0tl01kq 1819 40 % % NN cord-010027-r0tl01kq 1819 41 , , , cord-010027-r0tl01kq 1819 42 n=5 n=5 JJ cord-010027-r0tl01kq 1819 43 for for IN cord-010027-r0tl01kq 1819 44 each each DT cord-010027-r0tl01kq 1819 45 sub sub NN cord-010027-r0tl01kq 1819 46 - - JJ cord-010027-r0tl01kq 1819 47 site site NN cord-010027-r0tl01kq 1819 48 ) ) -RRB- cord-010027-r0tl01kq 1819 49 . . . cord-010027-r0tl01kq 1820 1 The the DT cord-010027-r0tl01kq 1820 2 subset subset NN cord-010027-r0tl01kq 1820 3 of of IN cord-010027-r0tl01kq 1820 4 patients patient NNS cord-010027-r0tl01kq 1820 5 we -PRON- PRP cord-010027-r0tl01kq 1820 6 identified identify VBD cord-010027-r0tl01kq 1820 7 show show VBP cord-010027-r0tl01kq 1820 8 demographics demographic NNS cord-010027-r0tl01kq 1820 9 consistent consistent JJ cord-010027-r0tl01kq 1820 10 with with IN cord-010027-r0tl01kq 1820 11 published publish VBN cord-010027-r0tl01kq 1820 12 literature literature NN cord-010027-r0tl01kq 1820 13 for for IN cord-010027-r0tl01kq 1820 14 US US NNP cord-010027-r0tl01kq 1820 15 , , , cord-010027-r0tl01kq 1820 16 Australian australian JJ cord-010027-r0tl01kq 1820 17 and and CC cord-010027-r0tl01kq 1820 18 other other JJ cord-010027-r0tl01kq 1820 19 European european JJ cord-010027-r0tl01kq 1820 20 cohorts cohort NNS cord-010027-r0tl01kq 1820 21 . . . cord-010027-r0tl01kq 1821 1 Merkel Merkel NNP cord-010027-r0tl01kq 1821 2 Cell Cell NNP cord-010027-r0tl01kq 1821 3 Carcinoma Carcinoma NNP cord-010027-r0tl01kq 1821 4 is be VBZ cord-010027-r0tl01kq 1821 5 a a DT cord-010027-r0tl01kq 1821 6 disease disease NN cord-010027-r0tl01kq 1821 7 of of IN cord-010027-r0tl01kq 1821 8 the the DT cord-010027-r0tl01kq 1821 9 elderly elderly JJ cord-010027-r0tl01kq 1821 10 affecting affect VBG cord-010027-r0tl01kq 1821 11 sun sun NN cord-010027-r0tl01kq 1821 12 - - HYPH cord-010027-r0tl01kq 1821 13 exposed expose VBN cord-010027-r0tl01kq 1821 14 sites site NNS cord-010027-r0tl01kq 1821 15 . . . cord-010027-r0tl01kq 1822 1 We -PRON- PRP cord-010027-r0tl01kq 1822 2 note note VBP cord-010027-r0tl01kq 1822 3 some some DT cord-010027-r0tl01kq 1822 4 variation variation NN cord-010027-r0tl01kq 1822 5 in in IN cord-010027-r0tl01kq 1822 6 the the DT cord-010027-r0tl01kq 1822 7 dominant dominant JJ cord-010027-r0tl01kq 1822 8 anatomic anatomic JJ cord-010027-r0tl01kq 1822 9 sites site NNS cord-010027-r0tl01kq 1822 10 between between IN cord-010027-r0tl01kq 1822 11 genders gender NNS cord-010027-r0tl01kq 1822 12 and and CC cord-010027-r0tl01kq 1822 13 conclude conclude VB cord-010027-r0tl01kq 1822 14 this this DT cord-010027-r0tl01kq 1822 15 is be VBZ cord-010027-r0tl01kq 1822 16 due due JJ cord-010027-r0tl01kq 1822 17 to to IN cord-010027-r0tl01kq 1822 18 differing differ VBG cord-010027-r0tl01kq 1822 19 environmental environmental JJ cord-010027-r0tl01kq 1822 20 exposure exposure NN cord-010027-r0tl01kq 1822 21 . . . cord-010027-r0tl01kq 1823 1 Background background NN cord-010027-r0tl01kq 1823 2 : : : cord-010027-r0tl01kq 1824 1 A a DT cord-010027-r0tl01kq 1824 2 novel novel JJ cord-010027-r0tl01kq 1824 3 cell cell NN cord-010027-r0tl01kq 1824 4 - - HYPH cord-010027-r0tl01kq 1824 5 dispensing dispense VBG cord-010027-r0tl01kq 1824 6 instrument instrument NN cord-010027-r0tl01kq 1824 7 referred refer VBN cord-010027-r0tl01kq 1824 8 to to IN cord-010027-r0tl01kq 1824 9 as as IN cord-010027-r0tl01kq 1824 10 a a DT cord-010027-r0tl01kq 1824 11 Single Single NNP cord-010027-r0tl01kq 1824 12 Cell Cell NNP cord-010027-r0tl01kq 1824 13 Manipulator manipulator NN cord-010027-r0tl01kq 1824 14 ( ( -LRB- cord-010027-r0tl01kq 1824 15 SCM SCM NNP cord-010027-r0tl01kq 1824 16 ) ) -RRB- cord-010027-r0tl01kq 1824 17 device device NN cord-010027-r0tl01kq 1824 18 was be VBD cord-010027-r0tl01kq 1824 19 developed develop VBN cord-010027-r0tl01kq 1824 20 with with IN cord-010027-r0tl01kq 1824 21 the the DT cord-010027-r0tl01kq 1824 22 following follow VBG cord-010027-r0tl01kq 1824 23 features feature NNS cord-010027-r0tl01kq 1824 24 : : : cord-010027-r0tl01kq 1824 25 i i LS cord-010027-r0tl01kq 1824 26 ) ) -RRB- cord-010027-r0tl01kq 1824 27 rapid rapid JJ cord-010027-r0tl01kq 1824 28 optical optical JJ cord-010027-r0tl01kq 1824 29 and and CC cord-010027-r0tl01kq 1824 30 fluorescent fluorescent JJ cord-010027-r0tl01kq 1824 31 detection detection NN cord-010027-r0tl01kq 1824 32 of of IN cord-010027-r0tl01kq 1824 33 single single JJ cord-010027-r0tl01kq 1824 34 cells cell NNS cord-010027-r0tl01kq 1824 35 ii ii CD cord-010027-r0tl01kq 1824 36 ) ) -RRB- cord-010027-r0tl01kq 1824 37 generation generation NN cord-010027-r0tl01kq 1824 38 of of IN cord-010027-r0tl01kq 1824 39 picoliter picoliter NN cord-010027-r0tl01kq 1824 40 sized sized JJ cord-010027-r0tl01kq 1824 41 droplets droplet NNS cord-010027-r0tl01kq 1824 42 encapsulating encapsulate VBG cord-010027-r0tl01kq 1824 43 the the DT cord-010027-r0tl01kq 1824 44 isolated isolated JJ cord-010027-r0tl01kq 1824 45 single single JJ cord-010027-r0tl01kq 1824 46 cell cell NN cord-010027-r0tl01kq 1824 47 and and CC cord-010027-r0tl01kq 1824 48 iii iii NN cord-010027-r0tl01kq 1824 49 ) ) -RRB- cord-010027-r0tl01kq 1824 50 printing printing NN cord-010027-r0tl01kq 1824 51 of of IN cord-010027-r0tl01kq 1824 52 the the DT cord-010027-r0tl01kq 1824 53 single single JJ cord-010027-r0tl01kq 1824 54 cell cell NN cord-010027-r0tl01kq 1824 55 in in IN cord-010027-r0tl01kq 1824 56 an an DT cord-010027-r0tl01kq 1824 57 " " `` cord-010027-r0tl01kq 1824 58 ink ink NN cord-010027-r0tl01kq 1824 59 - - HYPH cord-010027-r0tl01kq 1824 60 jet jet NN cord-010027-r0tl01kq 1824 61 " " '' cord-010027-r0tl01kq 1824 62 like like IN cord-010027-r0tl01kq 1824 63 manner manner NN cord-010027-r0tl01kq 1824 64 onto onto IN cord-010027-r0tl01kq 1824 65 a a DT cord-010027-r0tl01kq 1824 66 chosen choose VBN cord-010027-r0tl01kq 1824 67 substrate substrate NN cord-010027-r0tl01kq 1824 68 . . . cord-010027-r0tl01kq 1825 1 This this DT cord-010027-r0tl01kq 1825 2 technology technology NN cord-010027-r0tl01kq 1825 3 was be VBD cord-010027-r0tl01kq 1825 4 used use VBN cord-010027-r0tl01kq 1825 5 to to TO cord-010027-r0tl01kq 1825 6 isolate isolate VB cord-010027-r0tl01kq 1825 7 cells cell NNS cord-010027-r0tl01kq 1825 8 of of IN cord-010027-r0tl01kq 1825 9 interest interest NN cord-010027-r0tl01kq 1825 10 from from IN cord-010027-r0tl01kq 1825 11 i i NNP cord-010027-r0tl01kq 1825 12 ) ) -RRB- cord-010027-r0tl01kq 1825 13 heterogeneous heterogeneous JJ cord-010027-r0tl01kq 1825 14 mixed mixed JJ cord-010027-r0tl01kq 1825 15 populations population NNS cord-010027-r0tl01kq 1825 16 of of IN cord-010027-r0tl01kq 1825 17 cells cell NNS cord-010027-r0tl01kq 1825 18 , , , cord-010027-r0tl01kq 1825 19 ii ii LS cord-010027-r0tl01kq 1825 20 ) ) -RRB- cord-010027-r0tl01kq 1825 21 co co NNS cord-010027-r0tl01kq 1825 22 - - NNS cord-010027-r0tl01kq 1825 23 cultures culture NNS cord-010027-r0tl01kq 1825 24 of of IN cord-010027-r0tl01kq 1825 25 cells cell NNS cord-010027-r0tl01kq 1825 26 and and CC cord-010027-r0tl01kq 1825 27 iii iii LS cord-010027-r0tl01kq 1825 28 ) ) -RRB- cord-010027-r0tl01kq 1825 29 clinical clinical JJ cord-010027-r0tl01kq 1825 30 patient patient NN cord-010027-r0tl01kq 1825 31 samples sample NNS cord-010027-r0tl01kq 1825 32 for for IN cord-010027-r0tl01kq 1825 33 subsequent subsequent JJ cord-010027-r0tl01kq 1825 34 downstream downstream JJ cord-010027-r0tl01kq 1825 35 biological biological JJ cord-010027-r0tl01kq 1825 36 analysis analysis NN cord-010027-r0tl01kq 1825 37 . . . cord-010027-r0tl01kq 1826 1 Methods method NNS cord-010027-r0tl01kq 1826 2 : : : cord-010027-r0tl01kq 1826 3 Cells cell NNS cord-010027-r0tl01kq 1826 4 were be VBD cord-010027-r0tl01kq 1826 5 injected inject VBN cord-010027-r0tl01kq 1826 6 into into IN cord-010027-r0tl01kq 1826 7 a a DT cord-010027-r0tl01kq 1826 8 reusable reusable JJ cord-010027-r0tl01kq 1826 9 silicon silicon NN cord-010027-r0tl01kq 1826 10 dispenser dispenser NN cord-010027-r0tl01kq 1826 11 chip chip NN cord-010027-r0tl01kq 1826 12 that that WDT cord-010027-r0tl01kq 1826 13 was be VBD cord-010027-r0tl01kq 1826 14 coupled couple VBN cord-010027-r0tl01kq 1826 15 to to IN cord-010027-r0tl01kq 1826 16 a a DT cord-010027-r0tl01kq 1826 17 live live JJ cord-010027-r0tl01kq 1826 18 cell cell NN cord-010027-r0tl01kq 1826 19 camera camera NN cord-010027-r0tl01kq 1826 20 for for IN cord-010027-r0tl01kq 1826 21 image image NN cord-010027-r0tl01kq 1826 22 capture capture NN cord-010027-r0tl01kq 1826 23 and and CC cord-010027-r0tl01kq 1826 24 display display NN cord-010027-r0tl01kq 1826 25 of of IN cord-010027-r0tl01kq 1826 26 cells cell NNS cord-010027-r0tl01kq 1826 27 approaching approach VBG cord-010027-r0tl01kq 1826 28 the the DT cord-010027-r0tl01kq 1826 29 chip chip NN cord-010027-r0tl01kq 1826 30 's 's POS cord-010027-r0tl01kq 1826 31 exit exit NN cord-010027-r0tl01kq 1826 32 nozzle nozzle NN cord-010027-r0tl01kq 1826 33 . . . cord-010027-r0tl01kq 1827 1 An an DT cord-010027-r0tl01kq 1827 2 optical optical JJ cord-010027-r0tl01kq 1827 3 detection detection NN cord-010027-r0tl01kq 1827 4 mechanism mechanism NN cord-010027-r0tl01kq 1827 5 determined determine VBD cord-010027-r0tl01kq 1827 6 the the DT cord-010027-r0tl01kq 1827 7 presence presence NN cord-010027-r0tl01kq 1827 8 of of IN cord-010027-r0tl01kq 1827 9 single single JJ cord-010027-r0tl01kq 1827 10 , , , cord-010027-r0tl01kq 1827 11 fluorescent fluorescent NN cord-010027-r0tl01kq 1827 12 cells cell NNS cord-010027-r0tl01kq 1827 13 within within IN cord-010027-r0tl01kq 1827 14 the the DT cord-010027-r0tl01kq 1827 15 selected select VBN cord-010027-r0tl01kq 1827 16 region region NN cord-010027-r0tl01kq 1827 17 of of IN cord-010027-r0tl01kq 1827 18 interest interest NN cord-010027-r0tl01kq 1827 19 close close RB cord-010027-r0tl01kq 1827 20 to to IN cord-010027-r0tl01kq 1827 21 the the DT cord-010027-r0tl01kq 1827 22 chip chip NN cord-010027-r0tl01kq 1827 23 exit exit NN cord-010027-r0tl01kq 1827 24 nozzle nozzle NN cord-010027-r0tl01kq 1827 25 . . . cord-010027-r0tl01kq 1828 1 A a DT cord-010027-r0tl01kq 1828 2 sorting sorting NN cord-010027-r0tl01kq 1828 3 algorithm algorithm NN cord-010027-r0tl01kq 1828 4 ensured ensure VBD cord-010027-r0tl01kq 1828 5 that that IN cord-010027-r0tl01kq 1828 6 only only RB cord-010027-r0tl01kq 1828 7 droplets droplet NNS cord-010027-r0tl01kq 1828 8 containing contain VBG cord-010027-r0tl01kq 1828 9 the the DT cord-010027-r0tl01kq 1828 10 single single JJ cord-010027-r0tl01kq 1828 11 cells cell NNS cord-010027-r0tl01kq 1828 12 of of IN cord-010027-r0tl01kq 1828 13 interest interest NN cord-010027-r0tl01kq 1828 14 were be VBD cord-010027-r0tl01kq 1828 15 selected select VBN cord-010027-r0tl01kq 1828 16 for for IN cord-010027-r0tl01kq 1828 17 printing print VBG cord-010027-r0tl01kq 1828 18 to to IN cord-010027-r0tl01kq 1828 19 the the DT cord-010027-r0tl01kq 1828 20 prescribed prescribed JJ cord-010027-r0tl01kq 1828 21 location location NN cord-010027-r0tl01kq 1828 22 and and CC cord-010027-r0tl01kq 1828 23 user user NN cord-010027-r0tl01kq 1828 24 - - HYPH cord-010027-r0tl01kq 1828 25 chosen choose VBN cord-010027-r0tl01kq 1828 26 substrate substrate NN cord-010027-r0tl01kq 1828 27 . . . cord-010027-r0tl01kq 1829 1 Results result NNS cord-010027-r0tl01kq 1829 2 : : : cord-010027-r0tl01kq 1830 1 Fluorescently Fluorescently NNP cord-010027-r0tl01kq 1830 2 labelled label VBD cord-010027-r0tl01kq 1830 3 HPV16 hpv16 NN cord-010027-r0tl01kq 1831 1 CaSki caski JJ cord-010027-r0tl01kq 1831 2 cervical cervical JJ cord-010027-r0tl01kq 1831 3 cells cell NNS cord-010027-r0tl01kq 1831 4 were be VBD cord-010027-r0tl01kq 1831 5 spiked spike VBN cord-010027-r0tl01kq 1831 6 into into IN cord-010027-r0tl01kq 1831 7 a a DT cord-010027-r0tl01kq 1831 8 cervical cervical JJ cord-010027-r0tl01kq 1831 9 liquid liquid NN cord-010027-r0tl01kq 1831 10 based base VBN cord-010027-r0tl01kq 1831 11 cytology cytology NN cord-010027-r0tl01kq 1831 12 sample sample NN cord-010027-r0tl01kq 1831 13 and and CC cord-010027-r0tl01kq 1831 14 printed print VBN cord-010027-r0tl01kq 1831 15 onto onto IN cord-010027-r0tl01kq 1831 16 a a DT cord-010027-r0tl01kq 1831 17 glass glass NN cord-010027-r0tl01kq 1831 18 slide slide NN cord-010027-r0tl01kq 1831 19 using use VBG cord-010027-r0tl01kq 1831 20 the the DT cord-010027-r0tl01kq 1831 21 SCM SCM NNP cord-010027-r0tl01kq 1831 22 . . . cord-010027-r0tl01kq 1832 1 Undifferentiated Undifferentiated NNP cord-010027-r0tl01kq 1832 2 NTera2 NTera2 NNP cord-010027-r0tl01kq 1832 3 human human JJ cord-010027-r0tl01kq 1832 4 embryonal embryonal JJ cord-010027-r0tl01kq 1832 5 cancer cancer NN cord-010027-r0tl01kq 1832 6 stem stem NN cord-010027-r0tl01kq 1832 7 cells cell NNS cord-010027-r0tl01kq 1832 8 were be VBD cord-010027-r0tl01kq 1832 9 isolated isolate VBN cord-010027-r0tl01kq 1832 10 from from IN cord-010027-r0tl01kq 1832 11 a a DT cord-010027-r0tl01kq 1832 12 mixture mixture NN cord-010027-r0tl01kq 1832 13 of of IN cord-010027-r0tl01kq 1832 14 differentiated differentiated JJ cord-010027-r0tl01kq 1832 15 and and CC cord-010027-r0tl01kq 1832 16 undifferentiated undifferentiated JJ cord-010027-r0tl01kq 1832 17 cells cell NNS cord-010027-r0tl01kq 1832 18 based base VBN cord-010027-r0tl01kq 1832 19 on on IN cord-010027-r0tl01kq 1832 20 fluorescent fluorescent NN cord-010027-r0tl01kq 1832 21 tagging tagging NN cord-010027-r0tl01kq 1832 22 of of IN cord-010027-r0tl01kq 1832 23 the the DT cord-010027-r0tl01kq 1832 24 cell cell NN cord-010027-r0tl01kq 1832 25 surface surface NN cord-010027-r0tl01kq 1832 26 receptor receptor NN cord-010027-r0tl01kq 1832 27 , , , cord-010027-r0tl01kq 1832 28 stagespecific stagespecific NNP cord-010027-r0tl01kq 1832 29 embryonal embryonal NNP cord-010027-r0tl01kq 1832 30 antigen antigen NNP cord-010027-r0tl01kq 1832 31 4 4 CD cord-010027-r0tl01kq 1832 32 ( ( -LRB- cord-010027-r0tl01kq 1832 33 SSEA4 SSEA4 NNP cord-010027-r0tl01kq 1832 34 ) ) -RRB- cord-010027-r0tl01kq 1832 35 . . . cord-010027-r0tl01kq 1833 1 The the DT cord-010027-r0tl01kq 1833 2 thyroid thyroid JJ cord-010027-r0tl01kq 1833 3 stimulating stimulate VBG cord-010027-r0tl01kq 1833 4 hormone hormone NN cord-010027-r0tl01kq 1833 5 receptor receptor NN cord-010027-r0tl01kq 1833 6 ( ( -LRB- cord-010027-r0tl01kq 1833 7 TSHR TSHR NNP cord-010027-r0tl01kq 1833 8 ) ) -RRB- cord-010027-r0tl01kq 1833 9 was be VBD cord-010027-r0tl01kq 1833 10 expressed express VBN cord-010027-r0tl01kq 1833 11 in in IN cord-010027-r0tl01kq 1833 12 anaplastic anaplastic JJ cord-010027-r0tl01kq 1833 13 V600E V600E NNS cord-010027-r0tl01kq 1833 14 mutated mutate VBN cord-010027-r0tl01kq 1833 15 thyroid thyroid JJ cord-010027-r0tl01kq 1833 16 cancer cancer NN cord-010027-r0tl01kq 1833 17 cell cell NN cord-010027-r0tl01kq 1833 18 lines line NNS cord-010027-r0tl01kq 1833 19 that that WDT cord-010027-r0tl01kq 1833 20 were be VBD cord-010027-r0tl01kq 1833 21 treated treat VBN cord-010027-r0tl01kq 1833 22 with with IN cord-010027-r0tl01kq 1833 23 the the DT cord-010027-r0tl01kq 1833 24 MEK MEK NNP cord-010027-r0tl01kq 1833 25 inhibitor inhibitor NN cord-010027-r0tl01kq 1833 26 PD0325901 PD0325901 NNP cord-010027-r0tl01kq 1833 27 . . . cord-010027-r0tl01kq 1834 1 Treated treat VBN cord-010027-r0tl01kq 1834 2 cells cell NNS cord-010027-r0tl01kq 1834 3 were be VBD cord-010027-r0tl01kq 1834 4 isolated isolate VBN cord-010027-r0tl01kq 1834 5 using use VBG cord-010027-r0tl01kq 1834 6 the the DT cord-010027-r0tl01kq 1834 7 SCM SCM NNP cord-010027-r0tl01kq 1834 8 . . . cord-010027-r0tl01kq 1835 1 The the DT cord-010027-r0tl01kq 1835 2 SCM SCM NNP cord-010027-r0tl01kq 1835 3 PASCA PASCA NNP cord-010027-r0tl01kq 1835 4 technology technology NN cord-010027-r0tl01kq 1835 5 allows allow VBZ cord-010027-r0tl01kq 1835 6 isolation isolation NN cord-010027-r0tl01kq 1835 7 of of IN cord-010027-r0tl01kq 1835 8 single single JJ cord-010027-r0tl01kq 1835 9 cells cell NNS cord-010027-r0tl01kq 1835 10 from from IN cord-010027-r0tl01kq 1835 11 heterogeneous heterogeneous JJ cord-010027-r0tl01kq 1835 12 populations population NNS cord-010027-r0tl01kq 1835 13 of of IN cord-010027-r0tl01kq 1835 14 cells cell NNS cord-010027-r0tl01kq 1835 15 and and CC cord-010027-r0tl01kq 1835 16 clinical clinical JJ cord-010027-r0tl01kq 1835 17 samples sample NNS cord-010027-r0tl01kq 1835 18 for for IN cord-010027-r0tl01kq 1835 19 downstream downstream JJ cord-010027-r0tl01kq 1835 20 analysis analysis NN cord-010027-r0tl01kq 1835 21 at at IN cord-010027-r0tl01kq 1835 22 a a DT cord-010027-r0tl01kq 1835 23 single single JJ cord-010027-r0tl01kq 1835 24 cell cell NN cord-010027-r0tl01kq 1835 25 level level NN cord-010027-r0tl01kq 1835 26 . . . cord-010027-r0tl01kq 1836 1 This this DT cord-010027-r0tl01kq 1836 2 study study NN cord-010027-r0tl01kq 1836 3 aims aim VBZ cord-010027-r0tl01kq 1836 4 at at IN cord-010027-r0tl01kq 1836 5 quantifying quantify VBG cord-010027-r0tl01kq 1836 6 immunohistochemistry immunohistochemistry NN cord-010027-r0tl01kq 1836 7 ( ( -LRB- cord-010027-r0tl01kq 1836 8 IHC IHC NNP cord-010027-r0tl01kq 1836 9 ) ) -RRB- cord-010027-r0tl01kq 1836 10 stained stain VBN cord-010027-r0tl01kq 1836 11 human human JJ cord-010027-r0tl01kq 1836 12 cell cell NN cord-010027-r0tl01kq 1836 13 lines line NNS cord-010027-r0tl01kq 1836 14 for for IN cord-010027-r0tl01kq 1836 15 protein protein NN cord-010027-r0tl01kq 1836 16 biomarkers biomarker NNS cord-010027-r0tl01kq 1836 17 by by IN cord-010027-r0tl01kq 1836 18 manual manual JJ cord-010027-r0tl01kq 1836 19 pathologist pathologist NN cord-010027-r0tl01kq 1836 20 review review NN cord-010027-r0tl01kq 1836 21 . . . cord-010027-r0tl01kq 1837 1 Staining staining NN cord-010027-r0tl01kq 1837 2 analyses analysis NNS cord-010027-r0tl01kq 1837 3 are be VBP cord-010027-r0tl01kq 1837 4 used use VBN cord-010027-r0tl01kq 1837 5 to to TO cord-010027-r0tl01kq 1837 6 calibrate calibrate VB cord-010027-r0tl01kq 1837 7 tissue tissue NN cord-010027-r0tl01kq 1837 8 microarrays microarray NNS cord-010027-r0tl01kq 1837 9 of of IN cord-010027-r0tl01kq 1837 10 tumour tumour NN cord-010027-r0tl01kq 1837 11 cores core NNS cord-010027-r0tl01kq 1837 12 , , , cord-010027-r0tl01kq 1837 13 against against IN cord-010027-r0tl01kq 1837 14 quantitative quantitative JJ cord-010027-r0tl01kq 1837 15 protein protein NN cord-010027-r0tl01kq 1837 16 concentration concentration NN cord-010027-r0tl01kq 1837 17 allowing allow VBG cord-010027-r0tl01kq 1837 18 a a DT cord-010027-r0tl01kq 1837 19 systems system NNS cord-010027-r0tl01kq 1837 20 - - HYPH cord-010027-r0tl01kq 1837 21 based base VBN cord-010027-r0tl01kq 1837 22 data datum NNS cord-010027-r0tl01kq 1837 23 analysis analysis NN cord-010027-r0tl01kq 1837 24 . . . cord-010027-r0tl01kq 1838 1 As as IN cord-010027-r0tl01kq 1838 2 a a DT cord-010027-r0tl01kq 1838 3 proof proof NN cord-010027-r0tl01kq 1838 4 of of IN cord-010027-r0tl01kq 1838 5 concept concept NN cord-010027-r0tl01kq 1838 6 , , , cord-010027-r0tl01kq 1838 7 FFPE FFPE NNP cord-010027-r0tl01kq 1838 8 human human JJ cord-010027-r0tl01kq 1838 9 cell cell NN cord-010027-r0tl01kq 1838 10 line line NN cord-010027-r0tl01kq 1838 11 pellets pellet NNS cord-010027-r0tl01kq 1838 12 ( ( -LRB- cord-010027-r0tl01kq 1838 13 n=13 n=13 NNP cord-010027-r0tl01kq 1838 14 ) ) -RRB- cord-010027-r0tl01kq 1838 15 were be VBD cord-010027-r0tl01kq 1838 16 IHC IHC NNP cord-010027-r0tl01kq 1838 17 stained stain VBN cord-010027-r0tl01kq 1838 18 for for IN cord-010027-r0tl01kq 1838 19 Smac Smac NNP cord-010027-r0tl01kq 1838 20 protein protein NN cord-010027-r0tl01kq 1838 21 and and CC cord-010027-r0tl01kq 1838 22 analysed analyse VBD cord-010027-r0tl01kq 1838 23 using use VBG cord-010027-r0tl01kq 1838 24 Aperio Aperio NNP cord-010027-r0tl01kq 1838 25 image image NN cord-010027-r0tl01kq 1838 26 analysis analysis NN cord-010027-r0tl01kq 1838 27 software software NN cord-010027-r0tl01kq 1838 28 . . . cord-010027-r0tl01kq 1839 1 Staining stain VBG cord-010027-r0tl01kq 1839 2 quantification quantification NN cord-010027-r0tl01kq 1839 3 manually manually RB cord-010027-r0tl01kq 1839 4 performed perform VBN cord-010027-r0tl01kq 1839 5 by by IN cord-010027-r0tl01kq 1839 6 pathologists pathologist NNS cord-010027-r0tl01kq 1839 7 provided provide VBD cord-010027-r0tl01kq 1839 8 parameters parameter NNS cord-010027-r0tl01kq 1839 9 including include VBG cord-010027-r0tl01kq 1839 10 average average JJ cord-010027-r0tl01kq 1839 11 staining stain VBG cord-010027-r0tl01kq 1839 12 intensity intensity NN cord-010027-r0tl01kq 1839 13 , , , cord-010027-r0tl01kq 1839 14 percent percent NN cord-010027-r0tl01kq 1839 15 total total JJ cord-010027-r0tl01kq 1839 16 cell cell NN cord-010027-r0tl01kq 1839 17 positivity positivity NN cord-010027-r0tl01kq 1839 18 and and CC cord-010027-r0tl01kq 1839 19 H h NN cord-010027-r0tl01kq 1839 20 - - HYPH cord-010027-r0tl01kq 1839 21 score score NN cord-010027-r0tl01kq 1839 22 . . . cord-010027-r0tl01kq 1840 1 These these DT cord-010027-r0tl01kq 1840 2 data datum NNS cord-010027-r0tl01kq 1840 3 were be VBD cord-010027-r0tl01kq 1840 4 enriched enrich VBN cord-010027-r0tl01kq 1840 5 by by IN cord-010027-r0tl01kq 1840 6 qualitative qualitative JJ cord-010027-r0tl01kq 1840 7 parameters parameter NNS cord-010027-r0tl01kq 1840 8 pointing point VBG cord-010027-r0tl01kq 1840 9 out out RP cord-010027-r0tl01kq 1840 10 possible possible JJ cord-010027-r0tl01kq 1840 11 histological histological JJ cord-010027-r0tl01kq 1840 12 artefacts artefact NNS cord-010027-r0tl01kq 1840 13 . . . cord-010027-r0tl01kq 1841 1 A a DT cord-010027-r0tl01kq 1841 2 calibration calibration NN cord-010027-r0tl01kq 1841 3 curve curve NN cord-010027-r0tl01kq 1841 4 was be VBD cord-010027-r0tl01kq 1841 5 plotted plot VBN cord-010027-r0tl01kq 1841 6 using use VBG cord-010027-r0tl01kq 1841 7 H h NN cord-010027-r0tl01kq 1841 8 - - HYPH cord-010027-r0tl01kq 1841 9 score score NN cord-010027-r0tl01kq 1841 10 data datum NNS cord-010027-r0tl01kq 1841 11 and and CC cord-010027-r0tl01kq 1841 12 protein protein NN cord-010027-r0tl01kq 1841 13 concentrations concentration NNS cord-010027-r0tl01kq 1841 14 , , , cord-010027-r0tl01kq 1841 15 previously previously RB cord-010027-r0tl01kq 1841 16 determined determine VBN cord-010027-r0tl01kq 1841 17 by by IN cord-010027-r0tl01kq 1841 18 Western western JJ cord-010027-r0tl01kq 1841 19 blotting blotting NN cord-010027-r0tl01kq 1841 20 . . . cord-010027-r0tl01kq 1842 1 The the DT cord-010027-r0tl01kq 1842 2 panel panel NN cord-010027-r0tl01kq 1842 3 of of IN cord-010027-r0tl01kq 1842 4 cell cell NN cord-010027-r0tl01kq 1842 5 lines line NNS cord-010027-r0tl01kq 1842 6 provided provide VBD cord-010027-r0tl01kq 1842 7 a a DT cord-010027-r0tl01kq 1842 8 range range NN cord-010027-r0tl01kq 1842 9 of of IN cord-010027-r0tl01kq 1842 10 strong strong JJ cord-010027-r0tl01kq 1842 11 and and CC cord-010027-r0tl01kq 1842 12 weak weak JJ cord-010027-r0tl01kq 1842 13 / / SYM cord-010027-r0tl01kq 1842 14 absent absent JJ cord-010027-r0tl01kq 1842 15 IHC IHC NNP cord-010027-r0tl01kq 1842 16 staining staining NN cord-010027-r0tl01kq 1842 17 using use VBG cord-010027-r0tl01kq 1842 18 a a DT cord-010027-r0tl01kq 1842 19 highly highly RB cord-010027-r0tl01kq 1842 20 specific specific JJ cord-010027-r0tl01kq 1842 21 Smac Smac NNP cord-010027-r0tl01kq 1842 22 antibody antibody NN cord-010027-r0tl01kq 1842 23 . . . cord-010027-r0tl01kq 1843 1 The the DT cord-010027-r0tl01kq 1843 2 calibration calibration NN cord-010027-r0tl01kq 1843 3 curve curve NN cord-010027-r0tl01kq 1843 4 showed show VBD cord-010027-r0tl01kq 1843 5 a a DT cord-010027-r0tl01kq 1843 6 strong strong JJ cord-010027-r0tl01kq 1843 7 correlation correlation NN cord-010027-r0tl01kq 1843 8 between between IN cord-010027-r0tl01kq 1843 9 absolute absolute JJ cord-010027-r0tl01kq 1843 10 protein protein NN cord-010027-r0tl01kq 1843 11 concentrations concentration NNS cord-010027-r0tl01kq 1843 12 and and CC cord-010027-r0tl01kq 1843 13 manual manual JJ cord-010027-r0tl01kq 1843 14 H h NN cord-010027-r0tl01kq 1843 15 - - HYPH cord-010027-r0tl01kq 1843 16 scores score NNS cord-010027-r0tl01kq 1843 17 . . . cord-010027-r0tl01kq 1844 1 Expression expression NN cord-010027-r0tl01kq 1844 2 amounts amount VBZ cord-010027-r0tl01kq 1844 3 in in IN cord-010027-r0tl01kq 1844 4 cell cell NN cord-010027-r0tl01kq 1844 5 lines line NNS cord-010027-r0tl01kq 1844 6 correlate correlate VBP cord-010027-r0tl01kq 1844 7 with with IN cord-010027-r0tl01kq 1844 8 IHC IHC NNP cord-010027-r0tl01kq 1844 9 staining stain VBG cord-010027-r0tl01kq 1844 10 intensities intensity NNS cord-010027-r0tl01kq 1844 11 determined determine VBN cord-010027-r0tl01kq 1844 12 by by IN cord-010027-r0tl01kq 1844 13 pathologist pathologist NN cord-010027-r0tl01kq 1844 14 review review NN cord-010027-r0tl01kq 1844 15 . . . cord-010027-r0tl01kq 1845 1 The the DT cord-010027-r0tl01kq 1845 2 linear linear JJ cord-010027-r0tl01kq 1845 3 correlation correlation NN cord-010027-r0tl01kq 1845 4 between between IN cord-010027-r0tl01kq 1845 5 manual manual JJ cord-010027-r0tl01kq 1845 6 H h NN cord-010027-r0tl01kq 1845 7 - - HYPH cord-010027-r0tl01kq 1845 8 score score NN cord-010027-r0tl01kq 1845 9 and and CC cord-010027-r0tl01kq 1845 10 absolute absolute JJ cord-010027-r0tl01kq 1845 11 protein protein NN cord-010027-r0tl01kq 1845 12 values value NNS cord-010027-r0tl01kq 1845 13 provides provide VBZ cord-010027-r0tl01kq 1845 14 an an DT cord-010027-r0tl01kq 1845 15 avenue avenue NN cord-010027-r0tl01kq 1845 16 to to TO cord-010027-r0tl01kq 1845 17 indirectly indirectly RB cord-010027-r0tl01kq 1845 18 determine determine VB cord-010027-r0tl01kq 1845 19 protein protein NN cord-010027-r0tl01kq 1845 20 expression expression NN cord-010027-r0tl01kq 1845 21 . . . cord-010027-r0tl01kq 1846 1 Further further JJ cord-010027-r0tl01kq 1846 2 analysis analysis NN cord-010027-r0tl01kq 1846 3 will will MD cord-010027-r0tl01kq 1846 4 be be VB cord-010027-r0tl01kq 1846 5 performed perform VBN cord-010027-r0tl01kq 1846 6 on on IN cord-010027-r0tl01kq 1846 7 additional additional JJ cord-010027-r0tl01kq 1846 8 antigens antigen NNS cord-010027-r0tl01kq 1846 9 and and CC cord-010027-r0tl01kq 1846 10 analysis analysis NN cord-010027-r0tl01kq 1846 11 outcomes outcome NNS cord-010027-r0tl01kq 1846 12 will will MD cord-010027-r0tl01kq 1846 13 be be VB cord-010027-r0tl01kq 1846 14 then then RB cord-010027-r0tl01kq 1846 15 compared compare VBN cord-010027-r0tl01kq 1846 16 to to IN cord-010027-r0tl01kq 1846 17 digital digital JJ cord-010027-r0tl01kq 1846 18 results result NNS cord-010027-r0tl01kq 1846 19 . . . cord-010027-r0tl01kq 1847 1 This this DT cord-010027-r0tl01kq 1847 2 data datum NNS cord-010027-r0tl01kq 1847 3 will will MD cord-010027-r0tl01kq 1847 4 provide provide VB cord-010027-r0tl01kq 1847 5 the the DT cord-010027-r0tl01kq 1847 6 basis basis NN cord-010027-r0tl01kq 1847 7 for for IN cord-010027-r0tl01kq 1847 8 deterministic deterministic JJ cord-010027-r0tl01kq 1847 9 systems system NNS cord-010027-r0tl01kq 1847 10 - - HYPH cord-010027-r0tl01kq 1847 11 biological biological JJ cord-010027-r0tl01kq 1847 12 data data NN cord-010027-r0tl01kq 1847 13 analysis analysis NN cord-010027-r0tl01kq 1847 14 approaches approach NNS cord-010027-r0tl01kq 1847 15 . . . cord-010027-r0tl01kq 1848 1 Purpose purpose NN cord-010027-r0tl01kq 1848 2 of of IN cord-010027-r0tl01kq 1848 3 the the DT cord-010027-r0tl01kq 1848 4 Study study NN cord-010027-r0tl01kq 1848 5 : : : cord-010027-r0tl01kq 1848 6 ' ' `` cord-010027-r0tl01kq 1848 7 Lean Lean NNP cord-010027-r0tl01kq 1848 8 ' ' '' cord-010027-r0tl01kq 1848 9 is be VBZ cord-010027-r0tl01kq 1848 10 a a DT cord-010027-r0tl01kq 1848 11 management management NN cord-010027-r0tl01kq 1848 12 framework framework NN cord-010027-r0tl01kq 1848 13 for for IN cord-010027-r0tl01kq 1848 14 maximising maximise VBG cord-010027-r0tl01kq 1848 15 value value NN cord-010027-r0tl01kq 1848 16 and and CC cord-010027-r0tl01kq 1848 17 minimising minimise VBG cord-010027-r0tl01kq 1848 18 waste waste NN cord-010027-r0tl01kq 1848 19 . . . cord-010027-r0tl01kq 1849 1 It -PRON- PRP cord-010027-r0tl01kq 1849 2 originated originate VBD cord-010027-r0tl01kq 1849 3 in in IN cord-010027-r0tl01kq 1849 4 the the DT cord-010027-r0tl01kq 1849 5 automotive automotive JJ cord-010027-r0tl01kq 1849 6 manufacturing manufacturing NN cord-010027-r0tl01kq 1849 7 industry industry NN cord-010027-r0tl01kq 1849 8 and and CC cord-010027-r0tl01kq 1849 9 has have VBZ cord-010027-r0tl01kq 1849 10 been be VBN cord-010027-r0tl01kq 1849 11 utilised utilise VBN cord-010027-r0tl01kq 1849 12 successfully successfully RB cord-010027-r0tl01kq 1849 13 in in IN cord-010027-r0tl01kq 1849 14 non non JJ cord-010027-r0tl01kq 1849 15 - - JJ cord-010027-r0tl01kq 1849 16 manufacturing manufacturing JJ cord-010027-r0tl01kq 1849 17 processes process NNS cord-010027-r0tl01kq 1849 18 . . . cord-010027-r0tl01kq 1850 1 One one CD cord-010027-r0tl01kq 1850 2 such such JJ cord-010027-r0tl01kq 1850 3 application application NN cord-010027-r0tl01kq 1850 4 in in IN cord-010027-r0tl01kq 1850 5 our -PRON- PRP$ cord-010027-r0tl01kq 1850 6 department department NN cord-010027-r0tl01kq 1850 7 was be VBD cord-010027-r0tl01kq 1850 8 the the DT cord-010027-r0tl01kq 1850 9 ' ' `` cord-010027-r0tl01kq 1850 10 leaning leaning NN cord-010027-r0tl01kq 1850 11 ' ' '' cord-010027-r0tl01kq 1850 12 of of IN cord-010027-r0tl01kq 1850 13 the the DT cord-010027-r0tl01kq 1850 14 molecular molecular JJ cord-010027-r0tl01kq 1850 15 test test NN cord-010027-r0tl01kq 1850 16 requesting request VBG cord-010027-r0tl01kq 1850 17 process process NN cord-010027-r0tl01kq 1850 18 using use VBG cord-010027-r0tl01kq 1850 19 a a DT cord-010027-r0tl01kq 1850 20 smart smart JJ cord-010027-r0tl01kq 1850 21 - - HYPH cord-010027-r0tl01kq 1850 22 phone phone NN cord-010027-r0tl01kq 1850 23 app app NN cord-010027-r0tl01kq 1850 24 . . . cord-010027-r0tl01kq 1851 1 This this DT cord-010027-r0tl01kq 1851 2 study study NN cord-010027-r0tl01kq 1851 3 will will MD cord-010027-r0tl01kq 1851 4 look look VB cord-010027-r0tl01kq 1851 5 at at IN cord-010027-r0tl01kq 1851 6 the the DT cord-010027-r0tl01kq 1851 7 potential potential JJ cord-010027-r0tl01kq 1851 8 utility utility NN cord-010027-r0tl01kq 1851 9 of of IN cord-010027-r0tl01kq 1851 10 this this DT cord-010027-r0tl01kq 1851 11 application application NN cord-010027-r0tl01kq 1851 12 within within IN cord-010027-r0tl01kq 1851 13 the the DT cord-010027-r0tl01kq 1851 14 National National NNP cord-010027-r0tl01kq 1851 15 Health Health NNP cord-010027-r0tl01kq 1851 16 Service Service NNP cord-010027-r0tl01kq 1851 17 ( ( -LRB- cord-010027-r0tl01kq 1851 18 NHS NHS NNP cord-010027-r0tl01kq 1851 19 ) ) -RRB- cord-010027-r0tl01kq 1851 20 , , , cord-010027-r0tl01kq 1851 21 wherein wherein WRB cord-010027-r0tl01kq 1851 22 approximately approximately RB cord-010027-r0tl01kq 1851 23 twenty twenty CD cord-010027-r0tl01kq 1851 24 different different JJ cord-010027-r0tl01kq 1851 25 molecular molecular JJ cord-010027-r0tl01kq 1851 26 test test NN cord-010027-r0tl01kq 1851 27 request request NN cord-010027-r0tl01kq 1851 28 forms form NNS cord-010027-r0tl01kq 1851 29 are be VBP cord-010027-r0tl01kq 1851 30 currently currently RB cord-010027-r0tl01kq 1851 31 in in IN cord-010027-r0tl01kq 1851 32 use use NN cord-010027-r0tl01kq 1851 33 . . . cord-010027-r0tl01kq 1852 1 A a DT cord-010027-r0tl01kq 1852 2 mobile mobile JJ cord-010027-r0tl01kq 1852 3 application application NN cord-010027-r0tl01kq 1852 4 to to TO cord-010027-r0tl01kq 1852 5 facilitate facilitate VB cord-010027-r0tl01kq 1852 6 molecular molecular JJ cord-010027-r0tl01kq 1852 7 test test NN cord-010027-r0tl01kq 1852 8 requesting request VBG cord-010027-r0tl01kq 1852 9 was be VBD cord-010027-r0tl01kq 1852 10 developed develop VBN cord-010027-r0tl01kq 1852 11 using use VBG cord-010027-r0tl01kq 1852 12 Xcode Xcode NNP cord-010027-r0tl01kq 1852 13 and and CC cord-010027-r0tl01kq 1852 14 the the DT cord-010027-r0tl01kq 1852 15 objective objective JJ cord-010027-r0tl01kq 1852 16 C C NNP cord-010027-r0tl01kq 1852 17 programming programming NN cord-010027-r0tl01kq 1852 18 language language NN cord-010027-r0tl01kq 1852 19 . . . cord-010027-r0tl01kq 1853 1 The the DT cord-010027-r0tl01kq 1853 2 application application NN cord-010027-r0tl01kq 1853 3 was be VBD cord-010027-r0tl01kq 1853 4 built build VBN cord-010027-r0tl01kq 1853 5 around around IN cord-010027-r0tl01kq 1853 6 an an DT cord-010027-r0tl01kq 1853 7 email email NN cord-010027-r0tl01kq 1853 8 based base VBN cord-010027-r0tl01kq 1853 9 system system NN cord-010027-r0tl01kq 1853 10 . . . cord-010027-r0tl01kq 1854 1 Patient patient JJ cord-010027-r0tl01kq 1854 2 anonymity anonymity NN cord-010027-r0tl01kq 1854 3 was be VBD cord-010027-r0tl01kq 1854 4 paramount paramount JJ cord-010027-r0tl01kq 1854 5 in in IN cord-010027-r0tl01kq 1854 6 the the DT cord-010027-r0tl01kq 1854 7 design design NN cord-010027-r0tl01kq 1854 8 ; ; : cord-010027-r0tl01kq 1854 9 NHS NHS NNP cord-010027-r0tl01kq 1854 10 numbers number NNS cord-010027-r0tl01kq 1854 11 are be VBP cord-010027-r0tl01kq 1854 12 used use VBN cord-010027-r0tl01kq 1854 13 as as IN cord-010027-r0tl01kq 1854 14 identifiers identifier NNS cord-010027-r0tl01kq 1854 15 . . . cord-010027-r0tl01kq 1855 1 The the DT cord-010027-r0tl01kq 1855 2 application application NN cord-010027-r0tl01kq 1855 3 generates generate VBZ cord-010027-r0tl01kq 1855 4 a a DT cord-010027-r0tl01kq 1855 5 molecular molecular JJ cord-010027-r0tl01kq 1855 6 test test NN cord-010027-r0tl01kq 1855 7 request request NN cord-010027-r0tl01kq 1855 8 form form NN cord-010027-r0tl01kq 1855 9 and and CC cord-010027-r0tl01kq 1855 10 can can MD cord-010027-r0tl01kq 1855 11 also also RB cord-010027-r0tl01kq 1855 12 generate generate VB cord-010027-r0tl01kq 1855 13 a a DT cord-010027-r0tl01kq 1855 14 national national JJ cord-010027-r0tl01kq 1855 15 cancer cancer NN cord-010027-r0tl01kq 1855 16 drugs drug NNS cord-010027-r0tl01kq 1855 17 fund fund NN cord-010027-r0tl01kq 1855 18 application application NN cord-010027-r0tl01kq 1855 19 form form NN cord-010027-r0tl01kq 1855 20 for for IN cord-010027-r0tl01kq 1855 21 each each DT cord-010027-r0tl01kq 1855 22 request request NN cord-010027-r0tl01kq 1855 23 . . . cord-010027-r0tl01kq 1856 1 Administrative administrative JJ cord-010027-r0tl01kq 1856 2 staff staff NN cord-010027-r0tl01kq 1856 3 use use NN cord-010027-r0tl01kq 1856 4 colour colour NN cord-010027-r0tl01kq 1856 5 coded code VBN cord-010027-r0tl01kq 1856 6 flags flag NNS cord-010027-r0tl01kq 1856 7 to to TO cord-010027-r0tl01kq 1856 8 represent represent VB cord-010027-r0tl01kq 1856 9 the the DT cord-010027-r0tl01kq 1856 10 progress progress NN cord-010027-r0tl01kq 1856 11 of of IN cord-010027-r0tl01kq 1856 12 each each DT cord-010027-r0tl01kq 1856 13 email email NN cord-010027-r0tl01kq 1856 14 request request NN cord-010027-r0tl01kq 1856 15 through through IN cord-010027-r0tl01kq 1856 16 the the DT cord-010027-r0tl01kq 1856 17 workflow workflow NN cord-010027-r0tl01kq 1856 18 process process NN cord-010027-r0tl01kq 1856 19 to to TO cord-010027-r0tl01kq 1856 20 facilitate facilitate VB cord-010027-r0tl01kq 1856 21 tracking tracking NN cord-010027-r0tl01kq 1856 22 . . . cord-010027-r0tl01kq 1857 1 The the DT cord-010027-r0tl01kq 1857 2 app app NN cord-010027-r0tl01kq 1857 3 reduced reduce VBD cord-010027-r0tl01kq 1857 4 the the DT cord-010027-r0tl01kq 1857 5 administrative administrative JJ cord-010027-r0tl01kq 1857 6 staff staff NN cord-010027-r0tl01kq 1857 7 workload workload NN cord-010027-r0tl01kq 1857 8 by by IN cord-010027-r0tl01kq 1857 9 reducing reduce VBG cord-010027-r0tl01kq 1857 10 the the DT cord-010027-r0tl01kq 1857 11 number number NN cord-010027-r0tl01kq 1857 12 of of IN cord-010027-r0tl01kq 1857 13 steps step NNS cord-010027-r0tl01kq 1857 14 and and CC cord-010027-r0tl01kq 1857 15 paperwork paperwork NN cord-010027-r0tl01kq 1857 16 involved involve VBN cord-010027-r0tl01kq 1857 17 in in IN cord-010027-r0tl01kq 1857 18 the the DT cord-010027-r0tl01kq 1857 19 molecular molecular JJ cord-010027-r0tl01kq 1857 20 test test NN cord-010027-r0tl01kq 1857 21 requesting request VBG cord-010027-r0tl01kq 1857 22 process process NN cord-010027-r0tl01kq 1857 23 . . . cord-010027-r0tl01kq 1858 1 A a DT cord-010027-r0tl01kq 1858 2 threefold threefold JJ cord-010027-r0tl01kq 1858 3 reduction reduction NN cord-010027-r0tl01kq 1858 4 in in IN cord-010027-r0tl01kq 1858 5 time time NN cord-010027-r0tl01kq 1858 6 taken take VBN cord-010027-r0tl01kq 1858 7 by by IN cord-010027-r0tl01kq 1858 8 clinicians clinician NNS cord-010027-r0tl01kq 1858 9 to to TO cord-010027-r0tl01kq 1858 10 request request VB cord-010027-r0tl01kq 1858 11 molecular molecular JJ cord-010027-r0tl01kq 1858 12 tests test NNS cord-010027-r0tl01kq 1858 13 was be VBD cord-010027-r0tl01kq 1858 14 noted note VBN cord-010027-r0tl01kq 1858 15 . . . cord-010027-r0tl01kq 1859 1 A a DT cord-010027-r0tl01kq 1859 2 survey survey NN cord-010027-r0tl01kq 1859 3 of of IN cord-010027-r0tl01kq 1859 4 staff staff NN cord-010027-r0tl01kq 1859 5 involved involve VBN cord-010027-r0tl01kq 1859 6 with with IN cord-010027-r0tl01kq 1859 7 molecular molecular JJ cord-010027-r0tl01kq 1859 8 test test NN cord-010027-r0tl01kq 1859 9 requesting request VBG cord-010027-r0tl01kq 1859 10 revealed reveal VBD cord-010027-r0tl01kq 1859 11 a a DT cord-010027-r0tl01kq 1859 12 90 90 CD cord-010027-r0tl01kq 1859 13 % % NN cord-010027-r0tl01kq 1859 14 reduction reduction NN cord-010027-r0tl01kq 1859 15 in in IN cord-010027-r0tl01kq 1859 16 ' ' `` cord-010027-r0tl01kq 1859 17 lost lose VBN cord-010027-r0tl01kq 1859 18 requests request NNS cord-010027-r0tl01kq 1859 19 ' ' '' cord-010027-r0tl01kq 1859 20 after after IN cord-010027-r0tl01kq 1859 21 the the DT cord-010027-r0tl01kq 1859 22 introduction introduction NN cord-010027-r0tl01kq 1859 23 of of IN cord-010027-r0tl01kq 1859 24 the the DT cord-010027-r0tl01kq 1859 25 application application NN cord-010027-r0tl01kq 1859 26 . . . cord-010027-r0tl01kq 1860 1 We -PRON- PRP cord-010027-r0tl01kq 1860 2 present present VBP cord-010027-r0tl01kq 1860 3 a a DT cord-010027-r0tl01kq 1860 4 ' ' `` cord-010027-r0tl01kq 1860 5 lean lean JJ cord-010027-r0tl01kq 1860 6 ' ' '' cord-010027-r0tl01kq 1860 7 method method NN cord-010027-r0tl01kq 1860 8 for for IN cord-010027-r0tl01kq 1860 9 requesting request VBG cord-010027-r0tl01kq 1860 10 molecular molecular JJ cord-010027-r0tl01kq 1860 11 tests test NNS cord-010027-r0tl01kq 1860 12 using use VBG cord-010027-r0tl01kq 1860 13 a a DT cord-010027-r0tl01kq 1860 14 smart smart JJ cord-010027-r0tl01kq 1860 15 - - HYPH cord-010027-r0tl01kq 1860 16 phone phone NN cord-010027-r0tl01kq 1860 17 app app NN cord-010027-r0tl01kq 1860 18 . . . cord-010027-r0tl01kq 1861 1 This this DT cord-010027-r0tl01kq 1861 2 application application NN cord-010027-r0tl01kq 1861 3 can can MD cord-010027-r0tl01kq 1861 4 be be VB cord-010027-r0tl01kq 1861 5 used use VBN cord-010027-r0tl01kq 1861 6 to to TO cord-010027-r0tl01kq 1861 7 standardise standardise VB cord-010027-r0tl01kq 1861 8 molecular molecular JJ cord-010027-r0tl01kq 1861 9 test test NN cord-010027-r0tl01kq 1861 10 request request NN cord-010027-r0tl01kq 1861 11 forms form NNS cord-010027-r0tl01kq 1861 12 within within IN cord-010027-r0tl01kq 1861 13 the the DT cord-010027-r0tl01kq 1861 14 NHS NHS NNP cord-010027-r0tl01kq 1861 15 along along IN cord-010027-r0tl01kq 1861 16 with with IN cord-010027-r0tl01kq 1861 17 automatic automatic JJ cord-010027-r0tl01kq 1861 18 generation generation NN cord-010027-r0tl01kq 1861 19 of of IN cord-010027-r0tl01kq 1861 20 a a DT cord-010027-r0tl01kq 1861 21 national national JJ cord-010027-r0tl01kq 1861 22 cancer cancer NN cord-010027-r0tl01kq 1861 23 drugs drug NNS cord-010027-r0tl01kq 1861 24 fund fund NN cord-010027-r0tl01kq 1861 25 application application NN cord-010027-r0tl01kq 1861 26 form form NN cord-010027-r0tl01kq 1861 27 for for IN cord-010027-r0tl01kq 1861 28 each each DT cord-010027-r0tl01kq 1861 29 request request NN cord-010027-r0tl01kq 1861 30 . . . cord-010027-r0tl01kq 1862 1 Purpose purpose NN cord-010027-r0tl01kq 1862 2 of of IN cord-010027-r0tl01kq 1862 3 Study Study NNP cord-010027-r0tl01kq 1862 4 : : : cord-010027-r0tl01kq 1862 5 Automated automate VBN cord-010027-r0tl01kq 1862 6 approaches approach NNS cord-010027-r0tl01kq 1862 7 for for IN cord-010027-r0tl01kq 1862 8 quantitative quantitative JJ cord-010027-r0tl01kq 1862 9 digital digital JJ cord-010027-r0tl01kq 1862 10 image image NN cord-010027-r0tl01kq 1862 11 analysis analysis NN cord-010027-r0tl01kq 1862 12 ( ( -LRB- cord-010027-r0tl01kq 1862 13 DIA DIA NNP cord-010027-r0tl01kq 1862 14 ) ) -RRB- cord-010027-r0tl01kq 1862 15 of of IN cord-010027-r0tl01kq 1862 16 tissues tissue NNS cord-010027-r0tl01kq 1862 17 are be VBP cord-010027-r0tl01kq 1862 18 becoming become VBG cord-010027-r0tl01kq 1862 19 increasingly increasingly RB cord-010027-r0tl01kq 1862 20 popular popular JJ cord-010027-r0tl01kq 1862 21 in in IN cord-010027-r0tl01kq 1862 22 pathology pathology NN cord-010027-r0tl01kq 1862 23 due due IN cord-010027-r0tl01kq 1862 24 to to IN cord-010027-r0tl01kq 1862 25 advances advance NNS cord-010027-r0tl01kq 1862 26 in in IN cord-010027-r0tl01kq 1862 27 whole whole JJ cord-010027-r0tl01kq 1862 28 slide slide NN cord-010027-r0tl01kq 1862 29 scanning scanning NN cord-010027-r0tl01kq 1862 30 hardware hardware NN cord-010027-r0tl01kq 1862 31 and and CC cord-010027-r0tl01kq 1862 32 digital digital JJ cord-010027-r0tl01kq 1862 33 imaging imaging NN cord-010027-r0tl01kq 1862 34 technology technology NN cord-010027-r0tl01kq 1862 35 . . . cord-010027-r0tl01kq 1863 1 It -PRON- PRP cord-010027-r0tl01kq 1863 2 is be VBZ cord-010027-r0tl01kq 1863 3 essential essential JJ cord-010027-r0tl01kq 1863 4 that that IN cord-010027-r0tl01kq 1863 5 DIA DIA NNP cord-010027-r0tl01kq 1863 6 is be VBZ cord-010027-r0tl01kq 1863 7 standardised standardise VBN cord-010027-r0tl01kq 1863 8 to to TO cord-010027-r0tl01kq 1863 9 ensure ensure VB cord-010027-r0tl01kq 1863 10 accuracy accuracy NN cord-010027-r0tl01kq 1863 11 and and CC cord-010027-r0tl01kq 1863 12 reproducibility reproducibility NN cord-010027-r0tl01kq 1863 13 of of IN cord-010027-r0tl01kq 1863 14 results result NNS cord-010027-r0tl01kq 1863 15 . . . cord-010027-r0tl01kq 1864 1 Very very RB cord-010027-r0tl01kq 1864 2 limited limited JJ cord-010027-r0tl01kq 1864 3 published publish VBN cord-010027-r0tl01kq 1864 4 data data NN cord-010027-r0tl01kq 1864 5 exists exist VBZ cord-010027-r0tl01kq 1864 6 on on IN cord-010027-r0tl01kq 1864 7 the the DT cord-010027-r0tl01kq 1864 8 effect effect NN cord-010027-r0tl01kq 1864 9 of of IN cord-010027-r0tl01kq 1864 10 scanner scanner NN cord-010027-r0tl01kq 1864 11 hardware hardware NN cord-010027-r0tl01kq 1864 12 variations variation NNS cord-010027-r0tl01kq 1864 13 on on IN cord-010027-r0tl01kq 1864 14 the the DT cord-010027-r0tl01kq 1864 15 accuracy accuracy NN cord-010027-r0tl01kq 1864 16 and and CC cord-010027-r0tl01kq 1864 17 reproducibility reproducibility NN cord-010027-r0tl01kq 1864 18 of of IN cord-010027-r0tl01kq 1864 19 DIA DIA NNP cord-010027-r0tl01kq 1864 20 results result NNS cord-010027-r0tl01kq 1864 21 . . . cord-010027-r0tl01kq 1865 1 The the DT cord-010027-r0tl01kq 1865 2 aim aim NN cord-010027-r0tl01kq 1865 3 of of IN cord-010027-r0tl01kq 1865 4 this this DT cord-010027-r0tl01kq 1865 5 study study NN cord-010027-r0tl01kq 1865 6 was be VBD cord-010027-r0tl01kq 1865 7 to to TO cord-010027-r0tl01kq 1865 8 test test VB cord-010027-r0tl01kq 1865 9 the the DT cord-010027-r0tl01kq 1865 10 following follow VBG cord-010027-r0tl01kq 1865 11 variables variable NNS cord-010027-r0tl01kq 1865 12 : : : cord-010027-r0tl01kq 1865 13 variation variation NN cord-010027-r0tl01kq 1865 14 in in IN cord-010027-r0tl01kq 1865 15 light light JJ cord-010027-r0tl01kq 1865 16 source source NN cord-010027-r0tl01kq 1865 17 intensity intensity NN cord-010027-r0tl01kq 1865 18 during during IN cord-010027-r0tl01kq 1865 19 the the DT cord-010027-r0tl01kq 1865 20 day day NN cord-010027-r0tl01kq 1865 21 ; ; : cord-010027-r0tl01kq 1865 22 presnap presnap NNP cord-010027-r0tl01kq 1865 23 calibration calibration NNP cord-010027-r0tl01kq 1865 24 & & CC cord-010027-r0tl01kq 1865 25 white white JJ cord-010027-r0tl01kq 1865 26 balance balance NN cord-010027-r0tl01kq 1865 27 of of IN cord-010027-r0tl01kq 1865 28 scanned scan VBN cord-010027-r0tl01kq 1865 29 images image NNS cord-010027-r0tl01kq 1865 30 ; ; : cord-010027-r0tl01kq 1865 31 variation variation NN cord-010027-r0tl01kq 1865 32 in in IN cord-010027-r0tl01kq 1865 33 DIA DIA NNP cord-010027-r0tl01kq 1865 34 due due IN cord-010027-r0tl01kq 1865 35 to to IN cord-010027-r0tl01kq 1865 36 debris debris NN cord-010027-r0tl01kq 1865 37 on on IN cord-010027-r0tl01kq 1865 38 peripheral peripheral JJ cord-010027-r0tl01kq 1865 39 parts part NNS cord-010027-r0tl01kq 1865 40 of of IN cord-010027-r0tl01kq 1865 41 the the DT cord-010027-r0tl01kq 1865 42 section section NN cord-010027-r0tl01kq 1865 43 or or CC cord-010027-r0tl01kq 1865 44 coverslip coverslip NN cord-010027-r0tl01kq 1865 45 edges edge NNS cord-010027-r0tl01kq 1865 46 . . . cord-010027-r0tl01kq 1866 1 Methods method NNS cord-010027-r0tl01kq 1866 2 : : : cord-010027-r0tl01kq 1867 1 Immunohistochemistry immunohistochemistry NN cord-010027-r0tl01kq 1867 2 stained stained JJ cord-010027-r0tl01kq 1867 3 sections section NNS cord-010027-r0tl01kq 1867 4 from from IN cord-010027-r0tl01kq 1867 5 3 3 CD cord-010027-r0tl01kq 1867 6 patient patient NN cord-010027-r0tl01kq 1867 7 samples sample NNS cord-010027-r0tl01kq 1867 8 were be VBD cord-010027-r0tl01kq 1867 9 scanned scan VBN cord-010027-r0tl01kq 1867 10 on on IN cord-010027-r0tl01kq 1867 11 the the DT cord-010027-r0tl01kq 1867 12 same same JJ cord-010027-r0tl01kq 1867 13 Aperio Aperio NNP cord-010027-r0tl01kq 1867 14 CS CS NNP cord-010027-r0tl01kq 1867 15 scanner scanner NN cord-010027-r0tl01kq 1867 16 , , , cord-010027-r0tl01kq 1867 17 hourly hourly JJ cord-010027-r0tl01kq 1867 18 , , , cord-010027-r0tl01kq 1867 19 for for IN cord-010027-r0tl01kq 1867 20 2 2 CD cord-010027-r0tl01kq 1867 21 consecutive consecutive JJ cord-010027-r0tl01kq 1867 22 days day NNS cord-010027-r0tl01kq 1867 23 to to TO cord-010027-r0tl01kq 1867 24 generate generate VB cord-010027-r0tl01kq 1867 25 15 15 CD cord-010027-r0tl01kq 1867 26 scanned scan VBN cord-010027-r0tl01kq 1867 27 images image NNS cord-010027-r0tl01kq 1867 28 of of IN cord-010027-r0tl01kq 1867 29 each each DT cord-010027-r0tl01kq 1867 30 sample sample NN cord-010027-r0tl01kq 1867 31 , , , cord-010027-r0tl01kq 1867 32 representing represent VBG cord-010027-r0tl01kq 1867 33 45 45 CD cord-010027-r0tl01kq 1867 34 images image NNS cord-010027-r0tl01kq 1867 35 in in IN cord-010027-r0tl01kq 1867 36 total total NN cord-010027-r0tl01kq 1867 37 . . . cord-010027-r0tl01kq 1868 1 All all DT cord-010027-r0tl01kq 1868 2 scanned scan VBN cord-010027-r0tl01kq 1868 3 images image NNS cord-010027-r0tl01kq 1868 4 were be VBD cord-010027-r0tl01kq 1868 5 run run VBN cord-010027-r0tl01kq 1868 6 through through IN cord-010027-r0tl01kq 1868 7 Aperio Aperio NNP cord-010027-r0tl01kq 1868 8 software software NN cord-010027-r0tl01kq 1868 9 using use VBG cord-010027-r0tl01kq 1868 10 a a DT cord-010027-r0tl01kq 1868 11 macro macro NN cord-010027-r0tl01kq 1868 12 to to TO cord-010027-r0tl01kq 1868 13 quantify quantify VB cord-010027-r0tl01kq 1868 14 positive positive JJ cord-010027-r0tl01kq 1868 15 cell cell NN cord-010027-r0tl01kq 1868 16 counts count NNS cord-010027-r0tl01kq 1868 17 . . . cord-010027-r0tl01kq 1869 1 For for IN cord-010027-r0tl01kq 1869 2 a a DT cord-010027-r0tl01kq 1869 3 subset subset NN cord-010027-r0tl01kq 1869 4 of of IN cord-010027-r0tl01kq 1869 5 images image NNS cord-010027-r0tl01kq 1869 6 , , , cord-010027-r0tl01kq 1869 7 a a DT cord-010027-r0tl01kq 1869 8 region region NN cord-010027-r0tl01kq 1869 9 of of IN cord-010027-r0tl01kq 1869 10 interest interest NN cord-010027-r0tl01kq 1869 11 was be VBD cord-010027-r0tl01kq 1869 12 drawn draw VBN cord-010027-r0tl01kq 1869 13 around around IN cord-010027-r0tl01kq 1869 14 the the DT cord-010027-r0tl01kq 1869 15 tissue tissue NN cord-010027-r0tl01kq 1869 16 to to TO cord-010027-r0tl01kq 1869 17 exclude exclude VB cord-010027-r0tl01kq 1869 18 any any DT cord-010027-r0tl01kq 1869 19 debris debris NN cord-010027-r0tl01kq 1869 20 / / SYM cord-010027-r0tl01kq 1869 21 coverslip coverslip NN cord-010027-r0tl01kq 1869 22 edges edge NNS cord-010027-r0tl01kq 1869 23 from from IN cord-010027-r0tl01kq 1869 24 peripheral peripheral JJ cord-010027-r0tl01kq 1869 25 parts part NNS cord-010027-r0tl01kq 1869 26 of of IN cord-010027-r0tl01kq 1869 27 the the DT cord-010027-r0tl01kq 1869 28 slide slide NN cord-010027-r0tl01kq 1869 29 in in IN cord-010027-r0tl01kq 1869 30 the the DT cord-010027-r0tl01kq 1869 31 subsequent subsequent JJ cord-010027-r0tl01kq 1869 32 DIA dia NN cord-010027-r0tl01kq 1869 33 . . . cord-010027-r0tl01kq 1870 1 Statistical statistical JJ cord-010027-r0tl01kq 1870 2 analysis analysis NN cord-010027-r0tl01kq 1870 3 was be VBD cord-010027-r0tl01kq 1870 4 performed perform VBN cord-010027-r0tl01kq 1870 5 to to TO cord-010027-r0tl01kq 1870 6 calculate calculate VB cord-010027-r0tl01kq 1870 7 the the DT cord-010027-r0tl01kq 1870 8 coefficient coefficient NN cord-010027-r0tl01kq 1870 9 of of IN cord-010027-r0tl01kq 1870 10 variation variation NN cord-010027-r0tl01kq 1870 11 between between IN cord-010027-r0tl01kq 1870 12 DIA DIA NNP cord-010027-r0tl01kq 1870 13 results result NNS cord-010027-r0tl01kq 1870 14 from from IN cord-010027-r0tl01kq 1870 15 scans scan NNS cord-010027-r0tl01kq 1870 16 on on IN cord-010027-r0tl01kq 1870 17 different different JJ cord-010027-r0tl01kq 1870 18 days day NNS cord-010027-r0tl01kq 1870 19 . . . cord-010027-r0tl01kq 1871 1 Results result NNS cord-010027-r0tl01kq 1871 2 : : : cord-010027-r0tl01kq 1872 1 Variation variation NN cord-010027-r0tl01kq 1872 2 in in IN cord-010027-r0tl01kq 1872 3 light light JJ cord-010027-r0tl01kq 1872 4 source source NN cord-010027-r0tl01kq 1872 5 intensity intensity NN cord-010027-r0tl01kq 1872 6 accounted account VBD cord-010027-r0tl01kq 1872 7 for for IN cord-010027-r0tl01kq 1872 8 1.2 1.2 CD cord-010027-r0tl01kq 1872 9 % % NN cord-010027-r0tl01kq 1872 10 to to IN cord-010027-r0tl01kq 1872 11 2.1 2.1 CD cord-010027-r0tl01kq 1872 12 % % NN cord-010027-r0tl01kq 1872 13 variation variation NN cord-010027-r0tl01kq 1872 14 in in IN cord-010027-r0tl01kq 1872 15 cell cell NN cord-010027-r0tl01kq 1872 16 counts count NNS cord-010027-r0tl01kq 1872 17 between between IN cord-010027-r0tl01kq 1872 18 repeat repeat NN cord-010027-r0tl01kq 1872 19 scans scan NNS cord-010027-r0tl01kq 1872 20 of of IN cord-010027-r0tl01kq 1872 21 the the DT cord-010027-r0tl01kq 1872 22 same same JJ cord-010027-r0tl01kq 1872 23 slide slide NN cord-010027-r0tl01kq 1872 24 . . . cord-010027-r0tl01kq 1873 1 Exclusion exclusion NN cord-010027-r0tl01kq 1873 2 of of IN cord-010027-r0tl01kq 1873 3 debris debris NN cord-010027-r0tl01kq 1873 4 / / SYM cord-010027-r0tl01kq 1873 5 coverslip coverslip NN cord-010027-r0tl01kq 1873 6 edges edge NNS cord-010027-r0tl01kq 1873 7 accounted account VBD cord-010027-r0tl01kq 1873 8 for for IN cord-010027-r0tl01kq 1873 9 1 1 CD cord-010027-r0tl01kq 1873 10 - - SYM cord-010027-r0tl01kq 1873 11 2 2 CD cord-010027-r0tl01kq 1873 12 % % NN cord-010027-r0tl01kq 1873 13 variation variation NN cord-010027-r0tl01kq 1873 14 in in IN cord-010027-r0tl01kq 1873 15 cell cell NN cord-010027-r0tl01kq 1873 16 counts count NNS cord-010027-r0tl01kq 1873 17 between between IN cord-010027-r0tl01kq 1873 18 repeat repeat NN cord-010027-r0tl01kq 1873 19 scans scan NNS cord-010027-r0tl01kq 1873 20 of of IN cord-010027-r0tl01kq 1873 21 the the DT cord-010027-r0tl01kq 1873 22 same same JJ cord-010027-r0tl01kq 1873 23 slide slide NN cord-010027-r0tl01kq 1873 24 . . . cord-010027-r0tl01kq 1874 1 Subjective subjective JJ cord-010027-r0tl01kq 1874 2 analysis analysis NN cord-010027-r0tl01kq 1874 3 revealed reveal VBD cord-010027-r0tl01kq 1874 4 no no DT cord-010027-r0tl01kq 1874 5 significant significant JJ cord-010027-r0tl01kq 1874 6 difference difference NN cord-010027-r0tl01kq 1874 7 in in IN cord-010027-r0tl01kq 1874 8 appearance appearance NN cord-010027-r0tl01kq 1874 9 of of IN cord-010027-r0tl01kq 1874 10 different different JJ cord-010027-r0tl01kq 1874 11 scans scan NNS cord-010027-r0tl01kq 1874 12 of of IN cord-010027-r0tl01kq 1874 13 the the DT cord-010027-r0tl01kq 1874 14 same same JJ cord-010027-r0tl01kq 1874 15 slide slide NN cord-010027-r0tl01kq 1874 16 . . . cord-010027-r0tl01kq 1875 1 Conclusion conclusion NN cord-010027-r0tl01kq 1875 2 : : : cord-010027-r0tl01kq 1876 1 Variation variation NN cord-010027-r0tl01kq 1876 2 in in IN cord-010027-r0tl01kq 1876 3 light light JJ cord-010027-r0tl01kq 1876 4 source source NN cord-010027-r0tl01kq 1876 5 intensity intensity NN cord-010027-r0tl01kq 1876 6 , , , cord-010027-r0tl01kq 1876 7 presnap presnap NN cord-010027-r0tl01kq 1876 8 calibration calibration NN cord-010027-r0tl01kq 1876 9 and and CC cord-010027-r0tl01kq 1876 10 overall overall JJ cord-010027-r0tl01kq 1876 11 white white JJ cord-010027-r0tl01kq 1876 12 balance balance NN cord-010027-r0tl01kq 1876 13 , , , cord-010027-r0tl01kq 1876 14 plus plus CC cord-010027-r0tl01kq 1876 15 debris debris NN cord-010027-r0tl01kq 1876 16 in in IN cord-010027-r0tl01kq 1876 17 peripheral peripheral JJ cord-010027-r0tl01kq 1876 18 areas area NNS cord-010027-r0tl01kq 1876 19 of of IN cord-010027-r0tl01kq 1876 20 the the DT cord-010027-r0tl01kq 1876 21 section section NN cord-010027-r0tl01kq 1876 22 account account NN cord-010027-r0tl01kq 1876 23 for for IN cord-010027-r0tl01kq 1876 24 minimal minimal JJ cord-010027-r0tl01kq 1876 25 variation variation NN cord-010027-r0tl01kq 1876 26 in in IN cord-010027-r0tl01kq 1876 27 resultant resultant JJ cord-010027-r0tl01kq 1876 28 DIA DIA NNP cord-010027-r0tl01kq 1876 29 results result NNS cord-010027-r0tl01kq 1876 30 . . . cord-010027-r0tl01kq 1877 1 Technical technical JJ cord-010027-r0tl01kq 1877 2 advances advance NNS cord-010027-r0tl01kq 1877 3 in in IN cord-010027-r0tl01kq 1877 4 scanner scanner NN cord-010027-r0tl01kq 1877 5 hardware hardware NN cord-010027-r0tl01kq 1877 6 have have VBP cord-010027-r0tl01kq 1877 7 reduced reduce VBN cord-010027-r0tl01kq 1877 8 variability variability NN cord-010027-r0tl01kq 1877 9 in in IN cord-010027-r0tl01kq 1877 10 scanning scanning NN cord-010027-r0tl01kq 1877 11 operations operation NNS cord-010027-r0tl01kq 1877 12 . . . cord-010027-r0tl01kq 1878 1 Further further JJ cord-010027-r0tl01kq 1878 2 investigations investigation NNS cord-010027-r0tl01kq 1878 3 are be VBP cord-010027-r0tl01kq 1878 4 ongoing ongoing JJ cord-010027-r0tl01kq 1878 5 . . . cord-010027-r0tl01kq 1879 1 The the DT cord-010027-r0tl01kq 1879 2 Complexity complexity NN cord-010027-r0tl01kq 1879 3 of of IN cord-010027-r0tl01kq 1879 4 Ovarian Ovarian NNP cord-010027-r0tl01kq 1879 5 Cancer Cancer NNP cord-010027-r0tl01kq 1879 6 Resistance Resistance NNP cord-010027-r0tl01kq 1879 7 Mechanisms Mechanisms NNPS cord-010027-r0tl01kq 1879 8 : : : cord-010027-r0tl01kq 1879 9 A a DT cord-010027-r0tl01kq 1879 10 Novel Novel NNP cord-010027-r0tl01kq 1879 11 , , , cord-010027-r0tl01kq 1879 12 Clinically clinically RB cord-010027-r0tl01kq 1879 13 Relevant relevant JJ cord-010027-r0tl01kq 1879 14 , , , cord-010027-r0tl01kq 1879 15 in in IN cord-010027-r0tl01kq 1879 16 - - HYPH cord-010027-r0tl01kq 1879 17 vitro vitro FW cord-010027-r0tl01kq 1879 18 Investigation investigation NN cord-010027-r0tl01kq 1879 19 P P NNP cord-010027-r0tl01kq 1879 20 S S NNP cord-010027-r0tl01kq 1879 21 Busschots Busschots NNP cord-010027-r0tl01kq 1879 22 1 1 CD cord-010027-r0tl01kq 1879 23 G G NNP cord-010027-r0tl01kq 1879 24 Blackshields Blackshields NNP cord-010027-r0tl01kq 1879 25 1 1 CD cord-010027-r0tl01kq 1879 26 ; ; : cord-010027-r0tl01kq 1879 27 BT BT NNP cord-010027-r0tl01kq 1879 28 Hennessy Hennessy NNP cord-010027-r0tl01kq 1879 29 3 3 CD cord-010027-r0tl01kq 1879 30 Novel Novel NNP cord-010027-r0tl01kq 1879 31 carboplatin carboplatin NNS cord-010027-r0tl01kq 1879 32 and and CC cord-010027-r0tl01kq 1879 33 taxol taxol NN cord-010027-r0tl01kq 1879 34 resistant resistant JJ cord-010027-r0tl01kq 1879 35 cell cell NN cord-010027-r0tl01kq 1879 36 lines line NNS cord-010027-r0tl01kq 1879 37 were be VBD cord-010027-r0tl01kq 1879 38 developed develop VBN cord-010027-r0tl01kq 1879 39 from from IN cord-010027-r0tl01kq 1879 40 UPN251 UPN251 NNP cord-010027-r0tl01kq 1879 41 OC OC NNP cord-010027-r0tl01kq 1879 42 cells cell NNS cord-010027-r0tl01kq 1879 43 in in IN cord-010027-r0tl01kq 1879 44 a a DT cord-010027-r0tl01kq 1879 45 clinically clinically RB cord-010027-r0tl01kq 1879 46 relevant relevant JJ cord-010027-r0tl01kq 1879 47 selection selection NN cord-010027-r0tl01kq 1879 48 strategy strategy NN cord-010027-r0tl01kq 1879 49 to to TO cord-010027-r0tl01kq 1879 50 better better RB cord-010027-r0tl01kq 1879 51 understand understand VB cord-010027-r0tl01kq 1879 52 resistant resistant JJ cord-010027-r0tl01kq 1879 53 mechanisms mechanism NNS cord-010027-r0tl01kq 1879 54 in in IN cord-010027-r0tl01kq 1879 55 OC OC NNP cord-010027-r0tl01kq 1879 56 . . . cord-010027-r0tl01kq 1880 1 UPN251 UPN251 NNP cord-010027-r0tl01kq 1880 2 - - HYPH cord-010027-r0tl01kq 1880 3 7C 7C NNP cord-010027-r0tl01kq 1880 4 models model NNS cord-010027-r0tl01kq 1880 5 carboplatin carboplatin VBP cord-010027-r0tl01kq 1880 6 resistance resistance NN cord-010027-r0tl01kq 1880 7 and and CC cord-010027-r0tl01kq 1880 8 UPN251 UPN251 NNP cord-010027-r0tl01kq 1880 9 - - HYPH cord-010027-r0tl01kq 1880 10 7 7 CD cord-010027-r0tl01kq 1880 11 T T NNP cord-010027-r0tl01kq 1880 12 models model NNS cord-010027-r0tl01kq 1880 13 taxol taxol NNP cord-010027-r0tl01kq 1880 14 resistance resistance NN cord-010027-r0tl01kq 1880 15 . . . cord-010027-r0tl01kq 1881 1 UPN251 UPN251 NNP cord-010027-r0tl01kq 1881 2 - - HYPH cord-010027-r0tl01kq 1881 3 6CALT 6calt CD cord-010027-r0tl01kq 1881 4 and and CC cord-010027-r0tl01kq 1881 5 UPN251 UPN251 NNP cord-010027-r0tl01kq 1881 6 - - HYPH cord-010027-r0tl01kq 1881 7 6TALT 6talt CD cord-010027-r0tl01kq 1881 8 were be VBD cord-010027-r0tl01kq 1881 9 exposed expose VBN cord-010027-r0tl01kq 1881 10 to to IN cord-010027-r0tl01kq 1881 11 alternating alternate VBG cord-010027-r0tl01kq 1881 12 treatments treatment NNS cord-010027-r0tl01kq 1881 13 of of IN cord-010027-r0tl01kq 1881 14 both both DT cord-010027-r0tl01kq 1881 15 agents agent NNS cord-010027-r0tl01kq 1881 16 during during IN cord-010027-r0tl01kq 1881 17 development development NN cord-010027-r0tl01kq 1881 18 . . . cord-010027-r0tl01kq 1882 1 Affymetrix Affymetrix NNP cord-010027-r0tl01kq 1882 2 arrays array NNS cord-010027-r0tl01kq 1882 3 were be VBD cord-010027-r0tl01kq 1882 4 used use VBN cord-010027-r0tl01kq 1882 5 to to TO cord-010027-r0tl01kq 1882 6 characterise characterise VB cord-010027-r0tl01kq 1882 7 gene gene NN cord-010027-r0tl01kq 1882 8 / / SYM cord-010027-r0tl01kq 1882 9 miRNA miRNA NNP cord-010027-r0tl01kq 1882 10 signatures signature NNS cord-010027-r0tl01kq 1882 11 linked link VBN cord-010027-r0tl01kq 1882 12 with with IN cord-010027-r0tl01kq 1882 13 the the DT cord-010027-r0tl01kq 1882 14 development development NN cord-010027-r0tl01kq 1882 15 of of IN cord-010027-r0tl01kq 1882 16 chemoresistance chemoresistance NN cord-010027-r0tl01kq 1882 17 in in IN cord-010027-r0tl01kq 1882 18 OC OC NNP cord-010027-r0tl01kq 1882 19 cell cell NN cord-010027-r0tl01kq 1882 20 lines line NNS cord-010027-r0tl01kq 1882 21 UPN251 UPN251 NNP cord-010027-r0tl01kq 1882 22 - - HYPH cord-010027-r0tl01kq 1882 23 7C 7C NNP cord-010027-r0tl01kq 1882 24 and and CC cord-010027-r0tl01kq 1882 25 UPN251 UPN251 NNP cord-010027-r0tl01kq 1882 26 - - HYPH cord-010027-r0tl01kq 1882 27 7T. 7t. CD cord-010027-r0tl01kq 1882 28 Bioconductor Bioconductor NNP cord-010027-r0tl01kq 1882 29 software software NN cord-010027-r0tl01kq 1882 30 , , , cord-010027-r0tl01kq 1882 31 DAVID DAVID NNP cord-010027-r0tl01kq 1882 32 v6.7 v6.7 NNP cord-010027-r0tl01kq 1882 33 and and CC cord-010027-r0tl01kq 1882 34 miRNA miRNA NNP cord-010027-r0tl01kq 1882 35 - - HYPH cord-010027-r0tl01kq 1882 36 target target NN cord-010027-r0tl01kq 1882 37 interactions interaction NNS cord-010027-r0tl01kq 1882 38 ( ( -LRB- cord-010027-r0tl01kq 1882 39 MTIs mtis NN cord-010027-r0tl01kq 1882 40 ) ) -RRB- cord-010027-r0tl01kq 1882 41 analysis analysis NN cord-010027-r0tl01kq 1882 42 was be VBD cord-010027-r0tl01kq 1882 43 carried carry VBN cord-010027-r0tl01kq 1882 44 out out RP cord-010027-r0tl01kq 1882 45 to to TO cord-010027-r0tl01kq 1882 46 identify identify VB cord-010027-r0tl01kq 1882 47 de de NNP cord-010027-r0tl01kq 1882 48 - - JJ cord-010027-r0tl01kq 1882 49 regulated regulate VBN cord-010027-r0tl01kq 1882 50 genes/ genes/ NN cord-010027-r0tl01kq 1883 1 miRNAs miRNAs NNP cord-010027-r0tl01kq 1883 2 , , , cord-010027-r0tl01kq 1883 3 gene gene NN cord-010027-r0tl01kq 1883 4 pathways pathway NNS cord-010027-r0tl01kq 1883 5 and and CC cord-010027-r0tl01kq 1883 6 gene gene NN cord-010027-r0tl01kq 1883 7 / / SYM cord-010027-r0tl01kq 1883 8 miRNA miRNA NNP cord-010027-r0tl01kq 1883 9 interactions interaction NNS cord-010027-r0tl01kq 1883 10 involved involve VBN cord-010027-r0tl01kq 1883 11 in in IN cord-010027-r0tl01kq 1883 12 resistance resistance NN cord-010027-r0tl01kq 1883 13 . . . cord-010027-r0tl01kq 1884 1 UPN251 UPN251 NNP cord-010027-r0tl01kq 1884 2 sublines sublines NNP cord-010027-r0tl01kq 1884 3 developed develop VBD cord-010027-r0tl01kq 1884 4 using use VBG cord-010027-r0tl01kq 1884 5 taxol taxol NN cord-010027-r0tl01kq 1884 6 were be VBD cord-010027-r0tl01kq 1884 7 significantly significantly RB cord-010027-r0tl01kq 1884 8 resistant resistant JJ cord-010027-r0tl01kq 1884 9 to to IN cord-010027-r0tl01kq 1884 10 taxol taxol NN cord-010027-r0tl01kq 1884 11 , , , cord-010027-r0tl01kq 1884 12 vinblastine vinblastine NN cord-010027-r0tl01kq 1884 13 and and CC cord-010027-r0tl01kq 1884 14 olaparib olaparib NN cord-010027-r0tl01kq 1884 15 ( ( -LRB- cord-010027-r0tl01kq 1884 16 P p NN cord-010027-r0tl01kq 1884 17 - - HYPH cord-010027-r0tl01kq 1884 18 gp gp NN cord-010027-r0tl01kq 1884 19 substrates substrate NNS cord-010027-r0tl01kq 1884 20 ) ) -RRB- cord-010027-r0tl01kq 1884 21 , , , cord-010027-r0tl01kq 1884 22 and and CC cord-010027-r0tl01kq 1884 23 reversible reversible JJ cord-010027-r0tl01kq 1884 24 with with IN cord-010027-r0tl01kq 1884 25 elacridar elacridar NNP cord-010027-r0tl01kq 1884 26 ( ( -LRB- cord-010027-r0tl01kq 1884 27 P p NN cord-010027-r0tl01kq 1884 28 - - HYPH cord-010027-r0tl01kq 1884 29 gp gp NN cord-010027-r0tl01kq 1884 30 inhibitor inhibitor NN cord-010027-r0tl01kq 1884 31 ) ) -RRB- cord-010027-r0tl01kq 1884 32 treatment treatment NN cord-010027-r0tl01kq 1884 33 . . . cord-010027-r0tl01kq 1885 1 Significant significant JJ cord-010027-r0tl01kq 1885 2 up up JJ cord-010027-r0tl01kq 1885 3 - - HYPH cord-010027-r0tl01kq 1885 4 regulation regulation NN cord-010027-r0tl01kq 1885 5 ABCB1 ABCB1 NNP cord-010027-r0tl01kq 1885 6 was be VBD cord-010027-r0tl01kq 1885 7 seen see VBN cord-010027-r0tl01kq 1885 8 in in IN cord-010027-r0tl01kq 1885 9 UPN251 UPN251 NNP cord-010027-r0tl01kq 1885 10 - - HYPH cord-010027-r0tl01kq 1885 11 7 7 CD cord-010027-r0tl01kq 1885 12 T t NN cord-010027-r0tl01kq 1885 13 which which WDT cord-010027-r0tl01kq 1885 14 was be VBD cord-010027-r0tl01kq 1885 15 reflected reflect VBN cord-010027-r0tl01kq 1885 16 at at IN cord-010027-r0tl01kq 1885 17 the the DT cord-010027-r0tl01kq 1885 18 protein protein NN cord-010027-r0tl01kq 1885 19 level level NN cord-010027-r0tl01kq 1885 20 . . . cord-010027-r0tl01kq 1886 1 SRPX2 SRPX2 NNP cord-010027-r0tl01kq 1886 2 was be VBD cord-010027-r0tl01kq 1886 3 highly highly RB cord-010027-r0tl01kq 1886 4 up up RB cord-010027-r0tl01kq 1886 5 - - HYPH cord-010027-r0tl01kq 1886 6 regulated regulate VBN cord-010027-r0tl01kq 1886 7 in in IN cord-010027-r0tl01kq 1886 8 UPN251 UPN251 NNP cord-010027-r0tl01kq 1886 9 - - HYPH cord-010027-r0tl01kq 1886 10 7T. 7t. CD cord-010027-r0tl01kq 1886 11 GLI3 GLI3 NNP cord-010027-r0tl01kq 1887 1 and and CC cord-010027-r0tl01kq 1887 2 CCL20 CCL20 NNP cord-010027-r0tl01kq 1887 3 were be VBD cord-010027-r0tl01kq 1887 4 up up RB cord-010027-r0tl01kq 1887 5 / / SYM cord-010027-r0tl01kq 1887 6 down down RB cord-010027-r0tl01kq 1887 7 - - HYPH cord-010027-r0tl01kq 1887 8 regulated regulate VBN cord-010027-r0tl01kq 1887 9 respectively respectively RB cord-010027-r0tl01kq 1887 10 in in IN cord-010027-r0tl01kq 1887 11 UPN251 UPN251 NNP cord-010027-r0tl01kq 1887 12 - - HYPH cord-010027-r0tl01kq 1887 13 7C. 7c. CD cord-010027-r0tl01kq 1887 14 GLI3 GLI3 NNP cord-010027-r0tl01kq 1888 1 had have VBD cord-010027-r0tl01kq 1888 2 a a DT cord-010027-r0tl01kq 1888 3 validated validate VBN cord-010027-r0tl01kq 1888 4 interaction interaction NN cord-010027-r0tl01kq 1888 5 with with IN cord-010027-r0tl01kq 1888 6 miR-205 mir-205 JJ cord-010027-r0tl01kq 1888 7 down down RB cord-010027-r0tl01kq 1888 8 - - HYPH cord-010027-r0tl01kq 1888 9 regulated regulate VBN cord-010027-r0tl01kq 1888 10 in in IN cord-010027-r0tl01kq 1889 1 UPN251 UPN251 NNP cord-010027-r0tl01kq 1889 2 - - HYPH cord-010027-r0tl01kq 1889 3 7C. 7c. CD cord-010027-r0tl01kq 1889 4 LIN28B lin28b NN cord-010027-r0tl01kq 1889 5 was be VBD cord-010027-r0tl01kq 1889 6 highly highly RB cord-010027-r0tl01kq 1889 7 deregulated deregulate VBN cord-010027-r0tl01kq 1889 8 in in IN cord-010027-r0tl01kq 1889 9 UPN251 UPN251 NNP cord-010027-r0tl01kq 1889 10 - - HYPH cord-010027-r0tl01kq 1889 11 7C 7C NNP cord-010027-r0tl01kq 1889 12 and and CC cord-010027-r0tl01kq 1889 13 UPN251 UPN251 NNP cord-010027-r0tl01kq 1889 14 - - HYPH cord-010027-r0tl01kq 1889 15 7 7 CD cord-010027-r0tl01kq 1889 16 T t NN cord-010027-r0tl01kq 1889 17 and and CC cord-010027-r0tl01kq 1889 18 had have VBD cord-010027-r0tl01kq 1889 19 a a DT cord-010027-r0tl01kq 1889 20 validated validate VBN cord-010027-r0tl01kq 1889 21 interaction interaction NN cord-010027-r0tl01kq 1889 22 with with IN cord-010027-r0tl01kq 1889 23 let-7i let-7i NNP cord-010027-r0tl01kq 1889 24 , , , cord-010027-r0tl01kq 1889 25 down down RB cord-010027-r0tl01kq 1889 26 - - HYPH cord-010027-r0tl01kq 1889 27 regulated regulate VBN cord-010027-r0tl01kq 1889 28 in in IN cord-010027-r0tl01kq 1889 29 UPN251 UPN251 NNP cord-010027-r0tl01kq 1889 30 - - HYPH cord-010027-r0tl01kq 1889 31 7C. 7c. CD cord-010027-r0tl01kq 1889 32 P p NN cord-010027-r0tl01kq 1889 33 - - HYPH cord-010027-r0tl01kq 1889 34 gp gp NN cord-010027-r0tl01kq 1889 35 over over IN cord-010027-r0tl01kq 1889 36 - - HYPH cord-010027-r0tl01kq 1889 37 expression expression NN cord-010027-r0tl01kq 1889 38 is be VBZ cord-010027-r0tl01kq 1889 39 a a DT cord-010027-r0tl01kq 1889 40 dominant dominant JJ cord-010027-r0tl01kq 1889 41 mechanism mechanism NN cord-010027-r0tl01kq 1889 42 for for IN cord-010027-r0tl01kq 1889 43 taxol taxol NN cord-010027-r0tl01kq 1889 44 resistance resistance NN cord-010027-r0tl01kq 1889 45 in in IN cord-010027-r0tl01kq 1889 46 our -PRON- PRP$ cord-010027-r0tl01kq 1889 47 cell cell NN cord-010027-r0tl01kq 1889 48 lines line NNS cord-010027-r0tl01kq 1889 49 . . . cord-010027-r0tl01kq 1890 1 Mechanisms mechanism NNS cord-010027-r0tl01kq 1890 2 for for IN cord-010027-r0tl01kq 1890 3 carboplatin carboplatin NN cord-010027-r0tl01kq 1890 4 resistance resistance NN cord-010027-r0tl01kq 1890 5 are be VBP cord-010027-r0tl01kq 1890 6 more more RBR cord-010027-r0tl01kq 1890 7 complicated complicated JJ cord-010027-r0tl01kq 1890 8 . . . cord-010027-r0tl01kq 1891 1 The the DT cord-010027-r0tl01kq 1891 2 top top JJ cord-010027-r0tl01kq 1891 3 deregulated deregulate VBN cord-010027-r0tl01kq 1891 4 genes gene NNS cord-010027-r0tl01kq 1891 5 are be VBP cord-010027-r0tl01kq 1891 6 involved involve VBN cord-010027-r0tl01kq 1891 7 in in IN cord-010027-r0tl01kq 1891 8 numerous numerous JJ cord-010027-r0tl01kq 1891 9 pathways pathway NNS cord-010027-r0tl01kq 1891 10 including include VBG cord-010027-r0tl01kq 1891 11 apoptosis apoptosis NN cord-010027-r0tl01kq 1891 12 , , , cord-010027-r0tl01kq 1891 13 cellular cellular JJ cord-010027-r0tl01kq 1891 14 transformation transformation NN cord-010027-r0tl01kq 1891 15 , , , cord-010027-r0tl01kq 1891 16 signal signal NN cord-010027-r0tl01kq 1891 17 transduction transduction NN cord-010027-r0tl01kq 1891 18 , , , cord-010027-r0tl01kq 1891 19 and and CC cord-010027-r0tl01kq 1891 20 cell cell NN cord-010027-r0tl01kq 1891 21 migration migration NN cord-010027-r0tl01kq 1891 22 Cervical Cervical NNP cord-010027-r0tl01kq 1891 23 Glandular glandular JJ cord-010027-r0tl01kq 1891 24 Neoplasia Neoplasia NNP cord-010027-r0tl01kq 1891 25 : : : cord-010027-r0tl01kq 1892 1 The the DT cord-010027-r0tl01kq 1892 2 Influence influence NN cord-010027-r0tl01kq 1892 3 of of IN cord-010027-r0tl01kq 1892 4 Excision Excision NNP cord-010027-r0tl01kq 1892 5 Procedure Procedure NNP cord-010027-r0tl01kq 1892 6 on on IN cord-010027-r0tl01kq 1892 7 Margin Margin NNP cord-010027-r0tl01kq 1892 8 Status status NN cord-010027-r0tl01kq 1893 1 Although although IN cord-010027-r0tl01kq 1893 2 cold cold JJ cord-010027-r0tl01kq 1893 3 knife knife NN cord-010027-r0tl01kq 1893 4 cones cone NNS cord-010027-r0tl01kq 1893 5 ( ( -LRB- cord-010027-r0tl01kq 1893 6 CKC CKC NNP cord-010027-r0tl01kq 1893 7 ) ) -RRB- cord-010027-r0tl01kq 1893 8 have have VBP cord-010027-r0tl01kq 1893 9 been be VBN cord-010027-r0tl01kq 1893 10 traditionally traditionally RB cord-010027-r0tl01kq 1893 11 advocated advocate VBN cord-010027-r0tl01kq 1893 12 for for IN cord-010027-r0tl01kq 1893 13 treatment treatment NN cord-010027-r0tl01kq 1893 14 of of IN cord-010027-r0tl01kq 1893 15 adenocarcinoma adenocarcinoma NN cord-010027-r0tl01kq 1893 16 in in IN cord-010027-r0tl01kq 1893 17 situ situ FW cord-010027-r0tl01kq 1893 18 ( ( -LRB- cord-010027-r0tl01kq 1893 19 AIS AIS NNP cord-010027-r0tl01kq 1893 20 ) ) -RRB- cord-010027-r0tl01kq 1893 21 , , , cord-010027-r0tl01kq 1893 22 large large JJ cord-010027-r0tl01kq 1893 23 loop loop NN cord-010027-r0tl01kq 1893 24 excisions excision NNS cord-010027-r0tl01kq 1893 25 of of IN cord-010027-r0tl01kq 1893 26 the the DT cord-010027-r0tl01kq 1893 27 transformation transformation NN cord-010027-r0tl01kq 1893 28 zone zone NN cord-010027-r0tl01kq 1893 29 ( ( -LRB- cord-010027-r0tl01kq 1893 30 LLETZ LLETZ NNP cord-010027-r0tl01kq 1893 31 ) ) -RRB- cord-010027-r0tl01kq 1893 32 are be VBP cord-010027-r0tl01kq 1893 33 increasingly increasingly RB cord-010027-r0tl01kq 1893 34 used use VBN cord-010027-r0tl01kq 1893 35 . . . cord-010027-r0tl01kq 1894 1 We -PRON- PRP cord-010027-r0tl01kq 1894 2 analysed analyse VBD cord-010027-r0tl01kq 1894 3 excisions excision NNS cord-010027-r0tl01kq 1894 4 from from IN cord-010027-r0tl01kq 1894 5 111 111 CD cord-010027-r0tl01kq 1894 6 patients patient NNS cord-010027-r0tl01kq 1894 7 where where WRB cord-010027-r0tl01kq 1894 8 AIS AIS NNP cord-010027-r0tl01kq 1894 9 was be VBD cord-010027-r0tl01kq 1894 10 confirmed confirm VBN cord-010027-r0tl01kq 1894 11 prior prior RB cord-010027-r0tl01kq 1894 12 to to IN cord-010027-r0tl01kq 1894 13 procedure procedure NN cord-010027-r0tl01kq 1894 14 over over IN cord-010027-r0tl01kq 1894 15 5 5 CD cord-010027-r0tl01kq 1894 16 years year NNS cord-010027-r0tl01kq 1894 17 to to TO cord-010027-r0tl01kq 1894 18 assess assess VB cord-010027-r0tl01kq 1894 19 the the DT cord-010027-r0tl01kq 1894 20 influence influence NN cord-010027-r0tl01kq 1894 21 of of IN cord-010027-r0tl01kq 1894 22 excision excision NN cord-010027-r0tl01kq 1894 23 procedure procedure NN cord-010027-r0tl01kq 1894 24 on on IN cord-010027-r0tl01kq 1894 25 final final JJ cord-010027-r0tl01kq 1894 26 margin margin NN cord-010027-r0tl01kq 1894 27 status status NN cord-010027-r0tl01kq 1894 28 . . . cord-010027-r0tl01kq 1895 1 We -PRON- PRP cord-010027-r0tl01kq 1895 2 tabulated tabulate VBD cord-010027-r0tl01kq 1895 3 whether whether IN cord-010027-r0tl01kq 1895 4 margins margin NNS cord-010027-r0tl01kq 1895 5 were be VBD cord-010027-r0tl01kq 1895 6 involved involve VBN cord-010027-r0tl01kq 1895 7 , , , cord-010027-r0tl01kq 1895 8 close close JJ cord-010027-r0tl01kq 1895 9 ( ( -LRB- cord-010027-r0tl01kq 1895 10 lesional lesional JJ cord-010027-r0tl01kq 1895 11 tissue tissue NN cord-010027-r0tl01kq 1895 12 less less JJR cord-010027-r0tl01kq 1895 13 than than IN cord-010027-r0tl01kq 1895 14 5 5 CD cord-010027-r0tl01kq 1895 15 mm mm NN cord-010027-r0tl01kq 1895 16 from from IN cord-010027-r0tl01kq 1895 17 margin margin NN cord-010027-r0tl01kq 1895 18 ) ) -RRB- cord-010027-r0tl01kq 1895 19 or or CC cord-010027-r0tl01kq 1895 20 excised excise VBN cord-010027-r0tl01kq 1895 21 . . . cord-010027-r0tl01kq 1896 1 Results result NNS cord-010027-r0tl01kq 1896 2 : : : cord-010027-r0tl01kq 1897 1 LLETZs LLETZs NNP cord-010027-r0tl01kq 1897 2 were be VBD cord-010027-r0tl01kq 1897 3 performed perform VBN cord-010027-r0tl01kq 1897 4 in in IN cord-010027-r0tl01kq 1897 5 70 70 CD cord-010027-r0tl01kq 1897 6 % % NN cord-010027-r0tl01kq 1897 7 ( ( -LRB- cord-010027-r0tl01kq 1897 8 78 78 CD cord-010027-r0tl01kq 1897 9 of of IN cord-010027-r0tl01kq 1897 10 111 111 CD cord-010027-r0tl01kq 1897 11 patients patient NNS cord-010027-r0tl01kq 1897 12 ) ) -RRB- cord-010027-r0tl01kq 1897 13 , , , cord-010027-r0tl01kq 1897 14 CKC CKC NNP cord-010027-r0tl01kq 1897 15 excision excision NN cord-010027-r0tl01kq 1897 16 in in IN cord-010027-r0tl01kq 1897 17 30 30 CD cord-010027-r0tl01kq 1897 18 % % NN cord-010027-r0tl01kq 1897 19 ( ( -LRB- cord-010027-r0tl01kq 1897 20 33 33 CD cord-010027-r0tl01kq 1897 21 of of IN cord-010027-r0tl01kq 1897 22 111 111 CD cord-010027-r0tl01kq 1897 23 ) ) -RRB- cord-010027-r0tl01kq 1897 24 . . . cord-010027-r0tl01kq 1898 1 Women woman NNS cord-010027-r0tl01kq 1898 2 who who WP cord-010027-r0tl01kq 1898 3 had have VBD cord-010027-r0tl01kq 1898 4 LLETZs lletz NNS cord-010027-r0tl01kq 1898 5 were be VBD cord-010027-r0tl01kq 1898 6 younger young JJR cord-010027-r0tl01kq 1898 7 than than IN cord-010027-r0tl01kq 1898 8 those those DT cord-010027-r0tl01kq 1898 9 having have VBG cord-010027-r0tl01kq 1898 10 CKC CKC NNP cord-010027-r0tl01kq 1898 11 excision excision NN cord-010027-r0tl01kq 1898 12 ( ( -LRB- cord-010027-r0tl01kq 1898 13 32.8 32.8 CD cord-010027-r0tl01kq 1898 14 years year NNS cord-010027-r0tl01kq 1898 15 versus versus IN cord-010027-r0tl01kq 1898 16 35.4 35.4 CD cord-010027-r0tl01kq 1898 17 years year NNS cord-010027-r0tl01kq 1898 18 ) ) -RRB- cord-010027-r0tl01kq 1898 19 . . . cord-010027-r0tl01kq 1899 1 Positive positive JJ cord-010027-r0tl01kq 1899 2 margins margin NNS cord-010027-r0tl01kq 1899 3 were be VBD cord-010027-r0tl01kq 1899 4 present present JJ cord-010027-r0tl01kq 1899 5 in in IN cord-010027-r0tl01kq 1899 6 21 21 CD cord-010027-r0tl01kq 1899 7 % % NN cord-010027-r0tl01kq 1899 8 ( ( -LRB- cord-010027-r0tl01kq 1899 9 16 16 CD cord-010027-r0tl01kq 1899 10 of of IN cord-010027-r0tl01kq 1899 11 78 78 CD cord-010027-r0tl01kq 1899 12 ) ) -RRB- cord-010027-r0tl01kq 1899 13 and and CC cord-010027-r0tl01kq 1899 14 close close JJ cord-010027-r0tl01kq 1899 15 margins margin NNS cord-010027-r0tl01kq 1899 16 in in IN cord-010027-r0tl01kq 1899 17 27 27 CD cord-010027-r0tl01kq 1899 18 % % NN cord-010027-r0tl01kq 1899 19 ( ( -LRB- cord-010027-r0tl01kq 1899 20 21 21 CD cord-010027-r0tl01kq 1899 21 of of IN cord-010027-r0tl01kq 1899 22 78 78 CD cord-010027-r0tl01kq 1899 23 ) ) -RRB- cord-010027-r0tl01kq 1899 24 LLETZ LLETZ NNP cord-010027-r0tl01kq 1899 25 cases case NNS cord-010027-r0tl01kq 1899 26 . . . cord-010027-r0tl01kq 1900 1 For for IN cord-010027-r0tl01kq 1900 2 CKC CKC NNP cord-010027-r0tl01kq 1900 3 , , , cord-010027-r0tl01kq 1900 4 margins margin NNS cord-010027-r0tl01kq 1900 5 were be VBD cord-010027-r0tl01kq 1900 6 positive positive JJ cord-010027-r0tl01kq 1900 7 in in IN cord-010027-r0tl01kq 1900 8 9 9 CD cord-010027-r0tl01kq 1900 9 % % NN cord-010027-r0tl01kq 1900 10 of of IN cord-010027-r0tl01kq 1900 11 cases case NNS cord-010027-r0tl01kq 1900 12 ( ( -LRB- cord-010027-r0tl01kq 1900 13 3 3 CD cord-010027-r0tl01kq 1900 14 of of IN cord-010027-r0tl01kq 1900 15 33 33 CD cord-010027-r0tl01kq 1900 16 ) ) -RRB- cord-010027-r0tl01kq 1900 17 and and CC cord-010027-r0tl01kq 1900 18 close close VB cord-010027-r0tl01kq 1900 19 in in IN cord-010027-r0tl01kq 1900 20 6 6 CD cord-010027-r0tl01kq 1900 21 % % NN cord-010027-r0tl01kq 1900 22 ( ( -LRB- cord-010027-r0tl01kq 1900 23 2 2 CD cord-010027-r0tl01kq 1900 24 of of IN cord-010027-r0tl01kq 1900 25 33 33 CD cord-010027-r0tl01kq 1900 26 ) ) -RRB- cord-010027-r0tl01kq 1901 1 Conclusion conclusion NN cord-010027-r0tl01kq 1901 2 : : : cord-010027-r0tl01kq 1902 1 Although although IN cord-010027-r0tl01kq 1902 2 complete complete JJ cord-010027-r0tl01kq 1902 3 excision excision NN cord-010027-r0tl01kq 1902 4 is be VBZ cord-010027-r0tl01kq 1902 5 more more RBR cord-010027-r0tl01kq 1902 6 frequently frequently RB cord-010027-r0tl01kq 1902 7 observed observe VBN cord-010027-r0tl01kq 1902 8 when when WRB cord-010027-r0tl01kq 1902 9 CKC CKC NNP cord-010027-r0tl01kq 1902 10 is be VBZ cord-010027-r0tl01kq 1902 11 performed perform VBN cord-010027-r0tl01kq 1902 12 , , , cord-010027-r0tl01kq 1902 13 compared compare VBN cord-010027-r0tl01kq 1902 14 to to IN cord-010027-r0tl01kq 1902 15 LLETZ LLETZ NNP cord-010027-r0tl01kq 1902 16 , , , cord-010027-r0tl01kq 1902 17 for for IN cord-010027-r0tl01kq 1902 18 the the DT cord-010027-r0tl01kq 1902 19 treatment treatment NN cord-010027-r0tl01kq 1902 20 of of IN cord-010027-r0tl01kq 1902 21 AIS AIS NNP cord-010027-r0tl01kq 1902 22 0 0 CD cord-010027-r0tl01kq 1902 23 % % NN cord-010027-r0tl01kq 1902 24 ) ) -RRB- cord-010027-r0tl01kq 1902 25 patients patient NNS cord-010027-r0tl01kq 1902 26 , , , cord-010027-r0tl01kq 1902 27 discordant discordant JJ cord-010027-r0tl01kq 1902 28 low low JJ cord-010027-r0tl01kq 1902 29 - - HYPH cord-010027-r0tl01kq 1902 30 grade grade NN cord-010027-r0tl01kq 1902 31 lymphoma lymphoma NN cord-010027-r0tl01kq 1902 32 was be VBD cord-010027-r0tl01kq 1902 33 identified identify VBN cord-010027-r0tl01kq 1902 34 in in IN cord-010027-r0tl01kq 1902 35 the the DT cord-010027-r0tl01kq 1902 36 bone bone NN cord-010027-r0tl01kq 1902 37 marrow marrow NN cord-010027-r0tl01kq 1902 38 during during IN cord-010027-r0tl01kq 1902 39 staging stage VBG cord-010027-r0tl01kq 1902 40 investigations investigation NNS cord-010027-r0tl01kq 1902 41 . . . cord-010027-r0tl01kq 1903 1 4 4 LS cord-010027-r0tl01kq 1903 2 were be VBD cord-010027-r0tl01kq 1903 3 classified classify VBN cord-010027-r0tl01kq 1903 4 as as IN cord-010027-r0tl01kq 1903 5 Follicular Follicular NNP cord-010027-r0tl01kq 1903 6 Lymphoma Lymphoma NNP cord-010027-r0tl01kq 1903 7 , , , cord-010027-r0tl01kq 1903 8 2 2 CD cord-010027-r0tl01kq 1903 9 Marginal Marginal NNP cord-010027-r0tl01kq 1903 10 Zone Zone NNP cord-010027-r0tl01kq 1903 11 Lymphoma Lymphoma NNP cord-010027-r0tl01kq 1903 12 , , , cord-010027-r0tl01kq 1903 13 2 2 CD cord-010027-r0tl01kq 1903 14 Chronic chronic NN cord-010027-r0tl01kq 1903 15 Lymphocytic lymphocytic JJ cord-010027-r0tl01kq 1903 16 Lymphoma Lymphoma NNP cord-010027-r0tl01kq 1903 17 , , , cord-010027-r0tl01kq 1903 18 1 1 CD cord-010027-r0tl01kq 1903 19 Lymphoplasmacytic Lymphoplasmacytic NNP cord-010027-r0tl01kq 1903 20 Lymphoma Lymphoma NNP cord-010027-r0tl01kq 1903 21 , , , cord-010027-r0tl01kq 1903 22 1 1 CD cord-010027-r0tl01kq 1903 23 Non Non NNP cord-010027-r0tl01kq 1903 24 CLL CLL NNP cord-010027-r0tl01kq 1903 25 -like -like NNP cord-010027-r0tl01kq 1903 26 Monoclonal Monoclonal NNP cord-010027-r0tl01kq 1903 27 B b NN cord-010027-r0tl01kq 1903 28 - - HYPH cord-010027-r0tl01kq 1903 29 cell cell NN cord-010027-r0tl01kq 1903 30 Lymphocytosis Lymphocytosis NNP cord-010027-r0tl01kq 1903 31 . . . cord-010027-r0tl01kq 1904 1 Five five CD cord-010027-r0tl01kq 1904 2 had have VBD cord-010027-r0tl01kq 1904 3 an an DT cord-010027-r0tl01kq 1904 4 accompanying accompany VBG cord-010027-r0tl01kq 1904 5 a a DT cord-010027-r0tl01kq 1904 6 low low JJ cord-010027-r0tl01kq 1904 7 - - HYPH cord-010027-r0tl01kq 1904 8 grade grade NN cord-010027-r0tl01kq 1904 9 component component NN cord-010027-r0tl01kq 1904 10 that that WDT cord-010027-r0tl01kq 1904 11 could could MD cord-010027-r0tl01kq 1904 12 not not RB cord-010027-r0tl01kq 1904 13 be be VB cord-010027-r0tl01kq 1904 14 classified classify VBN cord-010027-r0tl01kq 1904 15 . . . cord-010027-r0tl01kq 1905 1 None none NN cord-010027-r0tl01kq 1905 2 of of IN cord-010027-r0tl01kq 1905 3 the the DT cord-010027-r0tl01kq 1905 4 transformed transform VBN cord-010027-r0tl01kq 1905 5 high high JJ cord-010027-r0tl01kq 1905 6 - - HYPH cord-010027-r0tl01kq 1905 7 grade grade NN cord-010027-r0tl01kq 1905 8 lymphoma lymphoma NN cord-010027-r0tl01kq 1905 9 cases case NNS cord-010027-r0tl01kq 1905 10 were be VBD cord-010027-r0tl01kq 1905 11 EBV EBV NNP cord-010027-r0tl01kq 1905 12 positive positive JJ cord-010027-r0tl01kq 1905 13 . . . cord-010027-r0tl01kq 1906 1 In in IN cord-010027-r0tl01kq 1906 2 our -PRON- PRP$ cord-010027-r0tl01kq 1906 3 cohort cohort NN cord-010027-r0tl01kq 1906 4 , , , cord-010027-r0tl01kq 1906 5 we -PRON- PRP cord-010027-r0tl01kq 1906 6 did do VBD cord-010027-r0tl01kq 1906 7 not not RB cord-010027-r0tl01kq 1906 8 observe observe VB cord-010027-r0tl01kq 1906 9 statistically statistically RB cord-010027-r0tl01kq 1906 10 significant significant JJ cord-010027-r0tl01kq 1906 11 difference difference NN cord-010027-r0tl01kq 1906 12 in in IN cord-010027-r0tl01kq 1906 13 survival survival NN cord-010027-r0tl01kq 1906 14 between between IN cord-010027-r0tl01kq 1906 15 the the DT cord-010027-r0tl01kq 1906 16 Transformed transformed JJ cord-010027-r0tl01kq 1906 17 and and CC cord-010027-r0tl01kq 1906 18 Non Non NNP cord-010027-r0tl01kq 1906 19 - - JJ cord-010027-r0tl01kq 1906 20 Transformed transformed JJ cord-010027-r0tl01kq 1906 21 cases case NNS cord-010027-r0tl01kq 1906 22 . . . cord-010027-r0tl01kq 1907 1 An an DT cord-010027-r0tl01kq 1907 2 equal equal JJ cord-010027-r0tl01kq 1907 3 proportion proportion NN cord-010027-r0tl01kq 1907 4 of of IN cord-010027-r0tl01kq 1907 5 cases case NNS cord-010027-r0tl01kq 1907 6 transformed transform VBN cord-010027-r0tl01kq 1907 7 from from IN cord-010027-r0tl01kq 1907 8 Follicular Follicular NNP cord-010027-r0tl01kq 1907 9 Lymphoma Lymphoma NNP cord-010027-r0tl01kq 1907 10 and and CC cord-010027-r0tl01kq 1907 11 Marginal Marginal NNP cord-010027-r0tl01kq 1907 12 Zone Zone NNP cord-010027-r0tl01kq 1907 13 Lymphoma Lymphoma NNP cord-010027-r0tl01kq 1907 14 . . . cord-010027-r0tl01kq 1908 1 19.1 19.1 CD cord-010027-r0tl01kq 1908 2 % % NN cord-010027-r0tl01kq 1908 3 of of IN cord-010027-r0tl01kq 1908 4 Transformed transform VBN cord-010027-r0tl01kq 1908 5 patients patient NNS cord-010027-r0tl01kq 1908 6 had have VBD cord-010027-r0tl01kq 1908 7 a a DT cord-010027-r0tl01kq 1908 8 previous previous JJ cord-010027-r0tl01kq 1908 9 history history NN cord-010027-r0tl01kq 1908 10 of of IN cord-010027-r0tl01kq 1908 11 another another DT cord-010027-r0tl01kq 1908 12 cancer cancer NN cord-010027-r0tl01kq 1908 13 , , , cord-010027-r0tl01kq 1908 14 compared compare VBN cord-010027-r0tl01kq 1908 15 to to IN cord-010027-r0tl01kq 1908 16 12.1 12.1 CD cord-010027-r0tl01kq 1908 17 % % NN cord-010027-r0tl01kq 1908 18 of of IN cord-010027-r0tl01kq 1908 19 Non Non NNP cord-010027-r0tl01kq 1908 20 - - JJ cord-010027-r0tl01kq 1908 21 Transformed transform VBN cord-010027-r0tl01kq 1908 22 cases case NNS cord-010027-r0tl01kq 1908 23 . . . cord-010027-r0tl01kq 1909 1 Age age NN cord-010027-r0tl01kq 1909 2 , , , cord-010027-r0tl01kq 1909 3 gender gender NN cord-010027-r0tl01kq 1909 4 and and CC cord-010027-r0tl01kq 1909 5 a a DT cord-010027-r0tl01kq 1909 6 history history NN cord-010027-r0tl01kq 1909 7 of of IN cord-010027-r0tl01kq 1909 8 autoimmune autoimmune JJ cord-010027-r0tl01kq 1909 9 disease disease NN cord-010027-r0tl01kq 1909 10 were be VBD cord-010027-r0tl01kq 1909 11 not not RB cord-010027-r0tl01kq 1909 12 associated associate VBN cord-010027-r0tl01kq 1909 13 with with IN cord-010027-r0tl01kq 1909 14 transformation transformation NN cord-010027-r0tl01kq 1909 15 . . . cord-010027-r0tl01kq 1910 1 Transformed transform VBN cord-010027-r0tl01kq 1910 2 Chronic Chronic NNP cord-010027-r0tl01kq 1910 3 Lymphocytic lymphocytic JJ cord-010027-r0tl01kq 1910 4 Lymphoma Lymphoma NNP cord-010027-r0tl01kq 1910 5 An An NNP cord-010027-r0tl01kq 1910 6 Investigation Investigation NNP cord-010027-r0tl01kq 1910 7 Into into IN cord-010027-r0tl01kq 1910 8 the the DT cord-010027-r0tl01kq 1910 9 Presentation Presentation NNP cord-010027-r0tl01kq 1910 10 and and CC cord-010027-r0tl01kq 1910 11 Nature Nature NNP cord-010027-r0tl01kq 1910 12 of of IN cord-010027-r0tl01kq 1910 13 Diffuse diffuse JJ cord-010027-r0tl01kq 1910 14 Large large JJ cord-010027-r0tl01kq 1910 15 B b NN cord-010027-r0tl01kq 1910 16 Cell cell NN cord-010027-r0tl01kq 1910 17 Lymphoma lymphoma NN cord-010027-r0tl01kq 1910 18 Within within IN cord-010027-r0tl01kq 1910 19 a a DT cord-010027-r0tl01kq 1910 20 Large large JJ cord-010027-r0tl01kq 1910 21 Patient Patient NNP cord-010027-r0tl01kq 1910 22 Cohort Cohort NNP cord-010027-r0tl01kq 1910 23 P p NN cord-010027-r0tl01kq 1910 24 HR HR NNP cord-010027-r0tl01kq 1910 25 Freer free JJR cord-010027-r0tl01kq 1910 26 1 1 CD cord-010027-r0tl01kq 1910 27 T T NNP cord-010027-r0tl01kq 1910 28 Cell Cell NNP cord-010027-r0tl01kq 1910 29 / / SYM cord-010027-r0tl01kq 1910 30 Histoiocyte Histoiocyte NNP cord-010027-r0tl01kq 1910 31 - - HYPH cord-010027-r0tl01kq 1910 32 Rich Rich NNP cord-010027-r0tl01kq 1910 33 Large large JJ cord-010027-r0tl01kq 1910 34 B b NN cord-010027-r0tl01kq 1910 35 Cell cell NN cord-010027-r0tl01kq 1910 36 Lymphoma lymphoma NN cord-010027-r0tl01kq 1910 37 ( ( -LRB- cord-010027-r0tl01kq 1910 38 4.2 4.2 CD cord-010027-r0tl01kq 1910 39 % % NN cord-010027-r0tl01kq 1910 40 ) ) -RRB- cord-010027-r0tl01kq 1910 41 was be VBD cord-010027-r0tl01kq 1910 42 the the DT cord-010027-r0tl01kq 1910 43 next next JJ cord-010027-r0tl01kq 1910 44 most most RBS cord-010027-r0tl01kq 1910 45 common common JJ cord-010027-r0tl01kq 1910 46 subtype subtype NN cord-010027-r0tl01kq 1910 47 , , , cord-010027-r0tl01kq 1910 48 followed follow VBN cord-010027-r0tl01kq 1910 49 by by IN cord-010027-r0tl01kq 1910 50 Primary primary JJ cord-010027-r0tl01kq 1910 51 DLBCL DLBCL NNP cord-010027-r0tl01kq 1910 52 of of IN cord-010027-r0tl01kq 1910 53 the the DT cord-010027-r0tl01kq 1910 54 CNS CNS NNP cord-010027-r0tl01kq 1910 55 ( ( -LRB- cord-010027-r0tl01kq 1910 56 3.0 3.0 CD cord-010027-r0tl01kq 1910 57 % % NN cord-010027-r0tl01kq 1910 58 ) ) -RRB- cord-010027-r0tl01kq 1910 59 . . . cord-010027-r0tl01kq 1911 1 A a DT cord-010027-r0tl01kq 1911 2 modified modified JJ cord-010027-r0tl01kq 1911 3 R r NN cord-010027-r0tl01kq 1911 4 - - HYPH cord-010027-r0tl01kq 1911 5 IPI IPI NNP cord-010027-r0tl01kq 1911 6 ( ( -LRB- cord-010027-r0tl01kq 1911 7 the the DT cord-010027-r0tl01kq 1911 8 patient patient JJ cord-010027-r0tl01kq 1911 9 performance performance NN cord-010027-r0tl01kq 1911 10 score score NN cord-010027-r0tl01kq 1911 11 was be VBD cord-010027-r0tl01kq 1911 12 unknown unknown JJ cord-010027-r0tl01kq 1911 13 ) ) -RRB- cord-010027-r0tl01kq 1911 14 was be VBD cord-010027-r0tl01kq 1911 15 used use VBN cord-010027-r0tl01kq 1911 16 to to TO cord-010027-r0tl01kq 1911 17 stratify stratify VB cord-010027-r0tl01kq 1911 18 the the DT cord-010027-r0tl01kq 1911 19 patients patient NNS cord-010027-r0tl01kq 1911 20 into into IN cord-010027-r0tl01kq 1911 21 four four CD cord-010027-r0tl01kq 1911 22 risk risk NN cord-010027-r0tl01kq 1911 23 groups group NNS cord-010027-r0tl01kq 1911 24 and and CC cord-010027-r0tl01kq 1911 25 was be VBD cord-010027-r0tl01kq 1911 26 found find VBN cord-010027-r0tl01kq 1911 27 to to TO cord-010027-r0tl01kq 1911 28 be be VB cord-010027-r0tl01kq 1911 29 predictive predictive JJ cord-010027-r0tl01kq 1911 30 of of IN cord-010027-r0tl01kq 1911 31 patient patient JJ cord-010027-r0tl01kq 1911 32 outcome outcome NN cord-010027-r0tl01kq 1911 33 . . . cord-010027-r0tl01kq 1912 1 The the DT cord-010027-r0tl01kq 1912 2 average average JJ cord-010027-r0tl01kq 1912 3 LDH LDH NNP cord-010027-r0tl01kq 1912 4 level level NN cord-010027-r0tl01kq 1912 5 was be VBD cord-010027-r0tl01kq 1912 6 733.5 733.5 CD cord-010027-r0tl01kq 1912 7 IU IU NNP cord-010027-r0tl01kq 1912 8 / / SYM cord-010027-r0tl01kq 1912 9 L L NNP cord-010027-r0tl01kq 1912 10 , , , cord-010027-r0tl01kq 1912 11 well well RB cord-010027-r0tl01kq 1912 12 above above IN cord-010027-r0tl01kq 1912 13 480 480 CD cord-010027-r0tl01kq 1912 14 , , , cord-010027-r0tl01kq 1912 15 the the DT cord-010027-r0tl01kq 1912 16 upper upper JJ cord-010027-r0tl01kq 1912 17 limit limit NN cord-010027-r0tl01kq 1912 18 of of IN cord-010027-r0tl01kq 1912 19 the the DT cord-010027-r0tl01kq 1912 20 normal normal JJ cord-010027-r0tl01kq 1912 21 range range NN cord-010027-r0tl01kq 1912 22 . . . cord-010027-r0tl01kq 1913 1 Of of IN cord-010027-r0tl01kq 1913 2 the the DT cord-010027-r0tl01kq 1913 3 cohort cohort NN cord-010027-r0tl01kq 1913 4 of of IN cord-010027-r0tl01kq 1913 5 patients patient NNS cord-010027-r0tl01kq 1913 6 , , , cord-010027-r0tl01kq 1913 7 52.8 52.8 CD cord-010027-r0tl01kq 1913 8 % % NN cord-010027-r0tl01kq 1913 9 achieved achieve VBD cord-010027-r0tl01kq 1913 10 remission remission NN cord-010027-r0tl01kq 1913 11 , , , cord-010027-r0tl01kq 1913 12 15.5 15.5 CD cord-010027-r0tl01kq 1913 13 % % NN cord-010027-r0tl01kq 1913 14 were be VBD cord-010027-r0tl01kq 1913 15 alive alive JJ cord-010027-r0tl01kq 1913 16 with with IN cord-010027-r0tl01kq 1913 17 disease disease NN cord-010027-r0tl01kq 1913 18 at at IN cord-010027-r0tl01kq 1913 19 the the DT cord-010027-r0tl01kq 1913 20 end end NN cord-010027-r0tl01kq 1913 21 of of IN cord-010027-r0tl01kq 1913 22 the the DT cord-010027-r0tl01kq 1913 23 study study NN cord-010027-r0tl01kq 1913 24 and and CC cord-010027-r0tl01kq 1913 25 31.7 31.7 CD cord-010027-r0tl01kq 1913 26 % % NN cord-010027-r0tl01kq 1913 27 are be VBP cord-010027-r0tl01kq 1913 28 now now RB cord-010027-r0tl01kq 1913 29 deceased deceased JJ cord-010027-r0tl01kq 1913 30 . . . cord-010027-r0tl01kq 1914 1 The the DT cord-010027-r0tl01kq 1914 2 majority majority NN cord-010027-r0tl01kq 1914 3 of of IN cord-010027-r0tl01kq 1914 4 patients patient NNS cord-010027-r0tl01kq 1914 5 that that WDT cord-010027-r0tl01kq 1914 6 did do VBD cord-010027-r0tl01kq 1914 7 die die VB cord-010027-r0tl01kq 1914 8 did do VBD cord-010027-r0tl01kq 1914 9 so so RB cord-010027-r0tl01kq 1914 10 within within IN cord-010027-r0tl01kq 1914 11 a a DT cord-010027-r0tl01kq 1914 12 year year NN cord-010027-r0tl01kq 1914 13 of of IN cord-010027-r0tl01kq 1914 14 diagnosis diagnosis NN cord-010027-r0tl01kq 1914 15 . . . cord-010027-r0tl01kq 1915 1 In in IN cord-010027-r0tl01kq 1915 2 addition addition NN cord-010027-r0tl01kq 1915 3 , , , cord-010027-r0tl01kq 1915 4 27 27 CD cord-010027-r0tl01kq 1915 5 Bcl-2 Bcl-2 NNP cord-010027-r0tl01kq 1915 6 negative negative JJ cord-010027-r0tl01kq 1915 7 patients patient NNS cord-010027-r0tl01kq 1915 8 were be VBD cord-010027-r0tl01kq 1915 9 identified identify VBN cord-010027-r0tl01kq 1915 10 , , , cord-010027-r0tl01kq 1915 11 with with IN cord-010027-r0tl01kq 1915 12 a a DT cord-010027-r0tl01kq 1915 13 mean mean JJ cord-010027-r0tl01kq 1915 14 age age NN cord-010027-r0tl01kq 1915 15 at at IN cord-010027-r0tl01kq 1915 16 diagnosis diagnosis NN cord-010027-r0tl01kq 1915 17 of of IN cord-010027-r0tl01kq 1915 18 66.8 66.8 CD cord-010027-r0tl01kq 1915 19 years year NNS cord-010027-r0tl01kq 1915 20 . . . cord-010027-r0tl01kq 1916 1 11 11 CD cord-010027-r0tl01kq 1916 2 of of IN cord-010027-r0tl01kq 1916 3 these these DT cord-010027-r0tl01kq 1916 4 patients patient NNS cord-010027-r0tl01kq 1916 5 were be VBD cord-010027-r0tl01kq 1916 6 female female JJ cord-010027-r0tl01kq 1916 7 and and CC cord-010027-r0tl01kq 1916 8 16 16 CD cord-010027-r0tl01kq 1916 9 male male NN cord-010027-r0tl01kq 1916 10 . . . cord-010027-r0tl01kq 1917 1 The the DT cord-010027-r0tl01kq 1917 2 mean mean JJ cord-010027-r0tl01kq 1917 3 LDH LDH NNP cord-010027-r0tl01kq 1917 4 level level NN cord-010027-r0tl01kq 1917 5 was be VBD cord-010027-r0tl01kq 1917 6 747 747 CD cord-010027-r0tl01kq 1918 1 Some some DT cord-010027-r0tl01kq 1918 2 researchers researcher NNS cord-010027-r0tl01kq 1918 3 included include VBD cord-010027-r0tl01kq 1918 4 additional additional JJ cord-010027-r0tl01kq 1918 5 clinical clinical JJ cord-010027-r0tl01kq 1918 6 features feature NNS cord-010027-r0tl01kq 1918 7 that that WDT cord-010027-r0tl01kq 1918 8 were be VBD cord-010027-r0tl01kq 1918 9 common common JJ cord-010027-r0tl01kq 1918 10 when when WRB cord-010027-r0tl01kq 1918 11 there there EX cord-010027-r0tl01kq 1918 12 was be VBD cord-010027-r0tl01kq 1918 13 malignancy malignancy NN cord-010027-r0tl01kq 1918 14 in in IN cord-010027-r0tl01kq 1918 15 the the DT cord-010027-r0tl01kq 1918 16 asymmetrical asymmetrical JJ cord-010027-r0tl01kq 1918 17 tonsils tonsil NNS cord-010027-r0tl01kq 1918 18 . . . cord-010027-r0tl01kq 1919 1 In in IN cord-010027-r0tl01kq 1919 2 this this DT cord-010027-r0tl01kq 1919 3 study study NN cord-010027-r0tl01kq 1919 4 we -PRON- PRP cord-010027-r0tl01kq 1919 5 aim aim VBP cord-010027-r0tl01kq 1919 6 to to TO cord-010027-r0tl01kq 1919 7 evaluate evaluate VB cord-010027-r0tl01kq 1919 8 the the DT cord-010027-r0tl01kq 1919 9 cancer cancer NN cord-010027-r0tl01kq 1919 10 detection detection NN cord-010027-r0tl01kq 1919 11 rate rate NN cord-010027-r0tl01kq 1919 12 in in IN cord-010027-r0tl01kq 1919 13 this this DT cord-010027-r0tl01kq 1919 14 setting setting NN cord-010027-r0tl01kq 1919 15 including include VBG cord-010027-r0tl01kq 1919 16 those those DT cord-010027-r0tl01kq 1919 17 who who WP cord-010027-r0tl01kq 1919 18 possess possess VBP cord-010027-r0tl01kq 1919 19 high high JJ cord-010027-r0tl01kq 1919 20 risk risk NN cord-010027-r0tl01kq 1919 21 clinical clinical JJ cord-010027-r0tl01kq 1919 22 features feature NNS cord-010027-r0tl01kq 1919 23 such such JJ cord-010027-r0tl01kq 1919 24 as as IN cord-010027-r0tl01kq 1919 25 age age NN cord-010027-r0tl01kq 1919 26 ( ( -LRB- cord-010027-r0tl01kq 1919 27 > > NFP cord-010027-r0tl01kq 1919 28 45 45 CD cord-010027-r0tl01kq 1919 29 ) ) -RRB- cord-010027-r0tl01kq 1919 30 , , , cord-010027-r0tl01kq 1919 31 pain pain NN cord-010027-r0tl01kq 1919 32 and and CC cord-010027-r0tl01kq 1919 33 history history NN cord-010027-r0tl01kq 1919 34 of of IN cord-010027-r0tl01kq 1919 35 smoking smoking NN cord-010027-r0tl01kq 1919 36 . . . cord-010027-r0tl01kq 1920 1 Methodology methodology NN cord-010027-r0tl01kq 1920 2 : : : cord-010027-r0tl01kq 1921 1 In in IN cord-010027-r0tl01kq 1921 2 total total JJ cord-010027-r0tl01kq 1921 3 , , , cord-010027-r0tl01kq 1921 4 119 119 CD cord-010027-r0tl01kq 1921 5 consecutive consecutive JJ cord-010027-r0tl01kq 1921 6 tonsillectomy tonsillectomy NN cord-010027-r0tl01kq 1921 7 cases case NNS cord-010027-r0tl01kq 1921 8 , , , cord-010027-r0tl01kq 1921 9 clinically clinically RB cord-010027-r0tl01kq 1921 10 labelled label VBN cord-010027-r0tl01kq 1921 11 as as IN cord-010027-r0tl01kq 1921 12 asymmetrical asymmetrical JJ cord-010027-r0tl01kq 1921 13 tonsils tonsil NNS cord-010027-r0tl01kq 1921 14 were be VBD cord-010027-r0tl01kq 1921 15 analysed analyse VBN cord-010027-r0tl01kq 1921 16 . . . cord-010027-r0tl01kq 1922 1 Out out IN cord-010027-r0tl01kq 1922 2 of of IN cord-010027-r0tl01kq 1922 3 these these DT cord-010027-r0tl01kq 1922 4 , , , cord-010027-r0tl01kq 1922 5 28 28 CD cord-010027-r0tl01kq 1922 6 cases case NNS cord-010027-r0tl01kq 1922 7 ( ( -LRB- cord-010027-r0tl01kq 1922 8 Group group NN cord-010027-r0tl01kq 1922 9 1 1 CD cord-010027-r0tl01kq 1922 10 ) ) -RRB- cord-010027-r0tl01kq 1922 11 were be VBD cord-010027-r0tl01kq 1922 12 additionally additionally RB cord-010027-r0tl01kq 1922 13 labelled label VBN cord-010027-r0tl01kq 1922 14 with with IN cord-010027-r0tl01kq 1922 15 investigation investigation NN cord-010027-r0tl01kq 1922 16 for for IN cord-010027-r0tl01kq 1922 17 unknown unknown JJ cord-010027-r0tl01kq 1922 18 primary primary JJ cord-010027-r0tl01kq 1922 19 , , , cord-010027-r0tl01kq 1922 20 obvious obvious JJ cord-010027-r0tl01kq 1922 21 lesion lesion NN cord-010027-r0tl01kq 1922 22 or or CC cord-010027-r0tl01kq 1922 23 suspicious suspicious JJ cord-010027-r0tl01kq 1922 24 ulcer ulcer NN cord-010027-r0tl01kq 1922 25 seen see VBN cord-010027-r0tl01kq 1922 26 . . . cord-010027-r0tl01kq 1923 1 The the DT cord-010027-r0tl01kq 1923 2 remaining remain VBG cord-010027-r0tl01kq 1923 3 91 91 CD cord-010027-r0tl01kq 1923 4 cases case NNS cord-010027-r0tl01kq 1923 5 with with IN cord-010027-r0tl01kq 1923 6 a a DT cord-010027-r0tl01kq 1923 7 sole sole JJ cord-010027-r0tl01kq 1923 8 clinical clinical JJ cord-010027-r0tl01kq 1923 9 indication indication NN cord-010027-r0tl01kq 1923 10 of of IN cord-010027-r0tl01kq 1923 11 asymmetry asymmetry NN cord-010027-r0tl01kq 1923 12 were be VBD cord-010027-r0tl01kq 1923 13 stratified stratify VBN cord-010027-r0tl01kq 1923 14 as as IN cord-010027-r0tl01kq 1923 15 group group NN cord-010027-r0tl01kq 1923 16 2 2 CD cord-010027-r0tl01kq 1923 17 . . . cord-010027-r0tl01kq 1924 1 Results result NNS cord-010027-r0tl01kq 1924 2 : : : cord-010027-r0tl01kq 1925 1 In in IN cord-010027-r0tl01kq 1925 2 the the DT cord-010027-r0tl01kq 1925 3 first first JJ cord-010027-r0tl01kq 1925 4 group group NN cord-010027-r0tl01kq 1925 5 , , , cord-010027-r0tl01kq 1925 6 7 7 CD cord-010027-r0tl01kq 1925 7 cases case NNS cord-010027-r0tl01kq 1925 8 had have VBD cord-010027-r0tl01kq 1925 9 a a DT cord-010027-r0tl01kq 1925 10 histological histological JJ cord-010027-r0tl01kq 1925 11 confirmation confirmation NN cord-010027-r0tl01kq 1925 12 of of IN cord-010027-r0tl01kq 1925 13 tonsillar tonsillar JJ cord-010027-r0tl01kq 1925 14 primary primary NN cord-010027-r0tl01kq 1925 15 ( ( -LRB- cord-010027-r0tl01kq 1925 16 25 25 CD cord-010027-r0tl01kq 1925 17 % % NN cord-010027-r0tl01kq 1925 18 ) ) -RRB- cord-010027-r0tl01kq 1925 19 . . . cord-010027-r0tl01kq 1926 1 While while IN cord-010027-r0tl01kq 1926 2 , , , cord-010027-r0tl01kq 1926 3 in in IN cord-010027-r0tl01kq 1926 4 the the DT cord-010027-r0tl01kq 1926 5 second second JJ cord-010027-r0tl01kq 1926 6 group group NN cord-010027-r0tl01kq 1926 7 , , , cord-010027-r0tl01kq 1926 8 the the DT cord-010027-r0tl01kq 1926 9 histological histological JJ cord-010027-r0tl01kq 1926 10 analysis analysis NN cord-010027-r0tl01kq 1926 11 showed show VBD cord-010027-r0tl01kq 1926 12 78 78 CD cord-010027-r0tl01kq 1926 13 cases case NNS cord-010027-r0tl01kq 1926 14 with with IN cord-010027-r0tl01kq 1926 15 benign benign JJ cord-010027-r0tl01kq 1926 16 reactive reactive JJ cord-010027-r0tl01kq 1926 17 pathology pathology NN cord-010027-r0tl01kq 1926 18 ( ( -LRB- cord-010027-r0tl01kq 1926 19 89 89 CD cord-010027-r0tl01kq 1926 20 % % NN cord-010027-r0tl01kq 1926 21 ) ) -RRB- cord-010027-r0tl01kq 1926 22 while while IN cord-010027-r0tl01kq 1926 23 , , , cord-010027-r0tl01kq 1926 24 one one CD cord-010027-r0tl01kq 1926 25 case case NN cord-010027-r0tl01kq 1926 26 was be VBD cord-010027-r0tl01kq 1926 27 diagnosed diagnose VBN cord-010027-r0tl01kq 1926 28 as as IN cord-010027-r0tl01kq 1926 29 malignant malignant JJ cord-010027-r0tl01kq 1926 30 lymphoma lymphoma NN cord-010027-r0tl01kq 1926 31 ( ( -LRB- cord-010027-r0tl01kq 1926 32 1 1 CD cord-010027-r0tl01kq 1926 33 % % NN cord-010027-r0tl01kq 1926 34 ) ) -RRB- cord-010027-r0tl01kq 1926 35 , , , cord-010027-r0tl01kq 1926 36 6 6 CD cord-010027-r0tl01kq 1926 37 cases case NNS cord-010027-r0tl01kq 1926 38 with with IN cord-010027-r0tl01kq 1926 39 mild mild JJ cord-010027-r0tl01kq 1926 40 dysplasia dysplasia NN cord-010027-r0tl01kq 1926 41 ( ( -LRB- cord-010027-r0tl01kq 1926 42 7 7 CD cord-010027-r0tl01kq 1926 43 % % NN cord-010027-r0tl01kq 1926 44 ) ) -RRB- cord-010027-r0tl01kq 1927 1 Conclusion conclusion NN cord-010027-r0tl01kq 1927 2 : : : cord-010027-r0tl01kq 1928 1 Our -PRON- PRP$ cord-010027-r0tl01kq 1928 2 results result NNS cord-010027-r0tl01kq 1928 3 do do VBP cord-010027-r0tl01kq 1928 4 correlate correlate VB cord-010027-r0tl01kq 1928 5 with with IN cord-010027-r0tl01kq 1928 6 the the DT cord-010027-r0tl01kq 1928 7 considerable considerable JJ cord-010027-r0tl01kq 1928 8 agreement agreement NN cord-010027-r0tl01kq 1928 9 amongst amongst IN cord-010027-r0tl01kq 1928 10 otolaryngologists otolaryngologist NNS cord-010027-r0tl01kq 1928 11 that that IN cord-010027-r0tl01kq 1928 12 the the DT cord-010027-r0tl01kq 1928 13 appearance appearance NN cord-010027-r0tl01kq 1928 14 of of IN cord-010027-r0tl01kq 1928 15 an an DT cord-010027-r0tl01kq 1928 16 asymmetrically asymmetrically RB cord-010027-r0tl01kq 1928 17 enlarged enlarged JJ cord-010027-r0tl01kq 1928 18 tonsil tonsil NN cord-010027-r0tl01kq 1928 19 in in IN cord-010027-r0tl01kq 1928 20 the the DT cord-010027-r0tl01kq 1928 21 presence presence NN cord-010027-r0tl01kq 1928 22 of of IN cord-010027-r0tl01kq 1928 23 associated associated JJ cord-010027-r0tl01kq 1928 24 risk risk NN cord-010027-r0tl01kq 1928 25 factors factor NNS cord-010027-r0tl01kq 1928 26 is be VBZ cord-010027-r0tl01kq 1928 27 considered consider VBN cord-010027-r0tl01kq 1928 28 an an DT cord-010027-r0tl01kq 1928 29 indication indication NN cord-010027-r0tl01kq 1928 30 for for IN cord-010027-r0tl01kq 1928 31 tonsillectomy tonsillectomy NN cord-010027-r0tl01kq 1928 32 and and CC cord-010027-r0tl01kq 1928 33 histological histological JJ cord-010027-r0tl01kq 1928 34 examination examination NN cord-010027-r0tl01kq 1928 35 given give VBN cord-010027-r0tl01kq 1928 36 the the DT cord-010027-r0tl01kq 1928 37 significant significant JJ cord-010027-r0tl01kq 1928 38 rate rate NN cord-010027-r0tl01kq 1928 39 of of IN cord-010027-r0tl01kq 1928 40 tonsillar tonsillar JJ cord-010027-r0tl01kq 1928 41 malignancies malignancy NNS cord-010027-r0tl01kq 1928 42 in in IN cord-010027-r0tl01kq 1928 43 this this DT cord-010027-r0tl01kq 1928 44 group group NN cord-010027-r0tl01kq 1928 45 . . . cord-010027-r0tl01kq 1929 1 Anatomical anatomical JJ cord-010027-r0tl01kq 1929 2 difference difference NN cord-010027-r0tl01kq 1929 3 in in IN cord-010027-r0tl01kq 1929 4 the the DT cord-010027-r0tl01kq 1929 5 depth depth NN cord-010027-r0tl01kq 1929 6 of of IN cord-010027-r0tl01kq 1929 7 tonsillar tonsillar JJ cord-010027-r0tl01kq 1929 8 fossa fossa NN cord-010027-r0tl01kq 1929 9 and and CC cord-010027-r0tl01kq 1929 10 asymmetry asymmetry NN cord-010027-r0tl01kq 1929 11 of of IN cord-010027-r0tl01kq 1929 12 the the DT cord-010027-r0tl01kq 1929 13 anterior anterior JJ cord-010027-r0tl01kq 1929 14 tonsillar tonsillar JJ cord-010027-r0tl01kq 1929 15 pillar pillar NN cord-010027-r0tl01kq 1929 16 may may MD cord-010027-r0tl01kq 1929 17 give give VB cord-010027-r0tl01kq 1929 18 a a DT cord-010027-r0tl01kq 1929 19 false false JJ cord-010027-r0tl01kq 1929 20 impression impression NN cord-010027-r0tl01kq 1929 21 of of IN cord-010027-r0tl01kq 1929 22 a a DT cord-010027-r0tl01kq 1929 23 clinically clinically RB cord-010027-r0tl01kq 1929 24 asymmetrical asymmetrical JJ cord-010027-r0tl01kq 1929 25 or or CC cord-010027-r0tl01kq 1929 26 unilateral unilateral JJ cord-010027-r0tl01kq 1929 27 enlarged enlarged JJ cord-010027-r0tl01kq 1929 28 tonsil tonsil NN cord-010027-r0tl01kq 1929 29 Metastatic Metastatic NNP cord-010027-r0tl01kq 1929 30 Adenoid Adenoid NNP cord-010027-r0tl01kq 1929 31 Cystic Cystic NNP cord-010027-r0tl01kq 1929 32 Carcinoma Carcinoma NNP cord-010027-r0tl01kq 1929 33 to to IN cord-010027-r0tl01kq 1929 34 the the DT cord-010027-r0tl01kq 1929 35 Lung Lung NNP cord-010027-r0tl01kq 1929 36 and and CC cord-010027-r0tl01kq 1929 37 Kidney kidney NN cord-010027-r0tl01kq 1929 38 : : : cord-010027-r0tl01kq 1930 1 A a DT cord-010027-r0tl01kq 1930 2 Single Single NNP cord-010027-r0tl01kq 1930 3 Case Case NNP cord-010027-r0tl01kq 1930 4 Report Report NNP cord-010027-r0tl01kq 1930 5 P p NN cord-010027-r0tl01kq 1930 6 RM rm NN cord-010027-r0tl01kq 1930 7 Doyle Doyle NNP cord-010027-r0tl01kq 1931 1 The the DT cord-010027-r0tl01kq 1931 2 tumour tumour NN cord-010027-r0tl01kq 1931 3 has have VBZ cord-010027-r0tl01kq 1931 4 three three CD cord-010027-r0tl01kq 1931 5 prognostically prognostically RB cord-010027-r0tl01kq 1931 6 significant significant JJ cord-010027-r0tl01kq 1931 7 subtypes subtype NNS cord-010027-r0tl01kq 1931 8 which which WDT cord-010027-r0tl01kq 1931 9 form form VBP cord-010027-r0tl01kq 1931 10 the the DT cord-010027-r0tl01kq 1931 11 basis basis NN cord-010027-r0tl01kq 1931 12 for for IN cord-010027-r0tl01kq 1931 13 tumour tumour NN cord-010027-r0tl01kq 1931 14 grading grading NN cord-010027-r0tl01kq 1931 15 ; ; : cord-010027-r0tl01kq 1931 16 cribriform cribriform NNP cord-010027-r0tl01kq 1931 17 , , , cord-010027-r0tl01kq 1931 18 most most RBS cord-010027-r0tl01kq 1931 19 frequent frequent JJ cord-010027-r0tl01kq 1931 20 , , , cord-010027-r0tl01kq 1931 21 tubular tubular JJ cord-010027-r0tl01kq 1931 22 and and CC cord-010027-r0tl01kq 1931 23 solid solid JJ cord-010027-r0tl01kq 1931 24 , , , cord-010027-r0tl01kq 1931 25 associated associate VBN cord-010027-r0tl01kq 1931 26 with with IN cord-010027-r0tl01kq 1931 27 a a DT cord-010027-r0tl01kq 1931 28 more more RBR cord-010027-r0tl01kq 1931 29 aggressive aggressive JJ cord-010027-r0tl01kq 1931 30 clinical clinical JJ cord-010027-r0tl01kq 1931 31 course course NN cord-010027-r0tl01kq 1931 32 and and CC cord-010027-r0tl01kq 1931 33 metastasis metastasis NN cord-010027-r0tl01kq 1931 34 . . . cord-010027-r0tl01kq 1932 1 In in IN cord-010027-r0tl01kq 1932 2 the the DT cord-010027-r0tl01kq 1932 3 majority majority NN cord-010027-r0tl01kq 1932 4 of of IN cord-010027-r0tl01kq 1932 5 cases case NNS cord-010027-r0tl01kq 1932 6 ( ( -LRB- cord-010027-r0tl01kq 1932 7 74 74 CD cord-010027-r0tl01kq 1932 8 % % NN cord-010027-r0tl01kq 1932 9 ) ) -RRB- cord-010027-r0tl01kq 1932 10 the the DT cord-010027-r0tl01kq 1932 11 tumour tumour NN cord-010027-r0tl01kq 1932 12 has have VBZ cord-010027-r0tl01kq 1932 13 an an DT cord-010027-r0tl01kq 1932 14 insidious insidious JJ cord-010027-r0tl01kq 1932 15 onset onset NN cord-010027-r0tl01kq 1932 16 and and CC cord-010027-r0tl01kq 1932 17 patients patient NNS cord-010027-r0tl01kq 1932 18 have have VBP cord-010027-r0tl01kq 1932 19 locally locally RB cord-010027-r0tl01kq 1932 20 invasive invasive JJ cord-010027-r0tl01kq 1932 21 disease disease NN cord-010027-r0tl01kq 1932 22 at at IN cord-010027-r0tl01kq 1932 23 first first JJ cord-010027-r0tl01kq 1932 24 presentation presentation NN cord-010027-r0tl01kq 1932 25 , , , cord-010027-r0tl01kq 1932 26 which which WDT cord-010027-r0tl01kq 1932 27 coupled couple VBD cord-010027-r0tl01kq 1932 28 with with IN cord-010027-r0tl01kq 1932 29 adjacent adjacent JJ cord-010027-r0tl01kq 1932 30 , , , cord-010027-r0tl01kq 1932 31 important important JJ cord-010027-r0tl01kq 1932 32 anatomical anatomical JJ cord-010027-r0tl01kq 1932 33 structures structure NNS cord-010027-r0tl01kq 1932 34 means mean VBZ cord-010027-r0tl01kq 1932 35 a a DT cord-010027-r0tl01kq 1932 36 complete complete JJ cord-010027-r0tl01kq 1932 37 primary primary JJ cord-010027-r0tl01kq 1932 38 surgical surgical JJ cord-010027-r0tl01kq 1932 39 resection resection NN cord-010027-r0tl01kq 1932 40 is be VBZ cord-010027-r0tl01kq 1932 41 often often RB cord-010027-r0tl01kq 1932 42 not not RB cord-010027-r0tl01kq 1932 43 feasible feasible JJ cord-010027-r0tl01kq 1932 44 . . . cord-010027-r0tl01kq 1933 1 Distant distant JJ cord-010027-r0tl01kq 1933 2 metastases metastasis NNS cord-010027-r0tl01kq 1933 3 are be VBP cord-010027-r0tl01kq 1933 4 frequent frequent JJ cord-010027-r0tl01kq 1933 5 and and CC cord-010027-r0tl01kq 1933 6 predominately predominately RB cord-010027-r0tl01kq 1933 7 involve involve VB cord-010027-r0tl01kq 1933 8 the the DT cord-010027-r0tl01kq 1933 9 lung lung NN cord-010027-r0tl01kq 1933 10 and and CC cord-010027-r0tl01kq 1933 11 bone bone NN cord-010027-r0tl01kq 1933 12 with with IN cord-010027-r0tl01kq 1933 13 renal renal JJ cord-010027-r0tl01kq 1933 14 metastasis metastasis NN cord-010027-r0tl01kq 1933 15 a a DT cord-010027-r0tl01kq 1933 16 rare rare JJ cord-010027-r0tl01kq 1933 17 occurrence occurrence NN cord-010027-r0tl01kq 1933 18 . . . cord-010027-r0tl01kq 1934 1 An an DT cord-010027-r0tl01kq 1934 2 optimal optimal JJ cord-010027-r0tl01kq 1934 3 treatment treatment NN cord-010027-r0tl01kq 1934 4 regime regime NN cord-010027-r0tl01kq 1934 5 for for IN cord-010027-r0tl01kq 1934 6 ACC ACC NNP cord-010027-r0tl01kq 1934 7 has have VBZ cord-010027-r0tl01kq 1934 8 yet yet RB cord-010027-r0tl01kq 1934 9 to to TO cord-010027-r0tl01kq 1934 10 be be VB cord-010027-r0tl01kq 1934 11 established establish VBN cord-010027-r0tl01kq 1934 12 and and CC cord-010027-r0tl01kq 1934 13 while while IN cord-010027-r0tl01kq 1934 14 local local JJ cord-010027-r0tl01kq 1934 15 management management NN cord-010027-r0tl01kq 1934 16 with with IN cord-010027-r0tl01kq 1934 17 combination combination NN cord-010027-r0tl01kq 1934 18 surgery surgery NN cord-010027-r0tl01kq 1934 19 and and CC cord-010027-r0tl01kq 1934 20 adjuvant adjuvant NN cord-010027-r0tl01kq 1934 21 radiotherapy radiotherapy NN cord-010027-r0tl01kq 1934 22 is be VBZ cord-010027-r0tl01kq 1934 23 currently currently RB cord-010027-r0tl01kq 1934 24 favoured favour VBN cord-010027-r0tl01kq 1934 25 there there EX cord-010027-r0tl01kq 1934 26 is be VBZ cord-010027-r0tl01kq 1934 27 conflicting conflict VBG cord-010027-r0tl01kq 1934 28 evidence evidence NN cord-010027-r0tl01kq 1934 29 regarding regard VBG cord-010027-r0tl01kq 1934 30 the the DT cord-010027-r0tl01kq 1934 31 use use NN cord-010027-r0tl01kq 1934 32 of of IN cord-010027-r0tl01kq 1934 33 radiotherapy radiotherapy NN cord-010027-r0tl01kq 1934 34 and and CC cord-010027-r0tl01kq 1934 35 no no DT cord-010027-r0tl01kq 1934 36 formal formal JJ cord-010027-r0tl01kq 1934 37 surveillance surveillance NN cord-010027-r0tl01kq 1934 38 guidance guidance NN cord-010027-r0tl01kq 1934 39 for for IN cord-010027-r0tl01kq 1934 40 local local JJ cord-010027-r0tl01kq 1934 41 and and CC cord-010027-r0tl01kq 1934 42 regional regional JJ cord-010027-r0tl01kq 1934 43 recurrence recurrence NN cord-010027-r0tl01kq 1934 44 or or CC cord-010027-r0tl01kq 1934 45 distant distant JJ cord-010027-r0tl01kq 1934 46 metastasis metastasis NN cord-010027-r0tl01kq 1934 47 exists exist VBZ cord-010027-r0tl01kq 1934 48 . . . cord-010027-r0tl01kq 1935 1 We -PRON- PRP cord-010027-r0tl01kq 1935 2 report report VBP cord-010027-r0tl01kq 1935 3 a a DT cord-010027-r0tl01kq 1935 4 single single JJ cord-010027-r0tl01kq 1935 5 case case NN cord-010027-r0tl01kq 1935 6 of of IN cord-010027-r0tl01kq 1935 7 a a DT cord-010027-r0tl01kq 1935 8 52 52 CD cord-010027-r0tl01kq 1935 9 year year NN cord-010027-r0tl01kq 1935 10 old old JJ cord-010027-r0tl01kq 1935 11 male male NN cord-010027-r0tl01kq 1935 12 who who WP cord-010027-r0tl01kq 1935 13 presented present VBD cord-010027-r0tl01kq 1935 14 in in IN cord-010027-r0tl01kq 1935 15 2004 2004 CD cord-010027-r0tl01kq 1935 16 with with IN cord-010027-r0tl01kq 1935 17 an an DT cord-010027-r0tl01kq 1935 18 asymptomatic asymptomatic JJ cord-010027-r0tl01kq 1935 19 right right JJ cord-010027-r0tl01kq 1935 20 neck neck NN cord-010027-r0tl01kq 1935 21 mass mass NN cord-010027-r0tl01kq 1935 22 and and CC cord-010027-r0tl01kq 1935 23 underwent undergo VBD cord-010027-r0tl01kq 1935 24 right right JJ cord-010027-r0tl01kq 1935 25 radical radical JJ cord-010027-r0tl01kq 1935 26 neck neck NN cord-010027-r0tl01kq 1935 27 dissection dissection NN cord-010027-r0tl01kq 1935 28 and and CC cord-010027-r0tl01kq 1935 29 adjuvant adjuvant NN cord-010027-r0tl01kq 1935 30 radiotherapy radiotherapy NN cord-010027-r0tl01kq 1935 31 for for IN cord-010027-r0tl01kq 1935 32 ACC ACC NNP cord-010027-r0tl01kq 1935 33 . . . cord-010027-r0tl01kq 1936 1 The the DT cord-010027-r0tl01kq 1936 2 patient patient NN cord-010027-r0tl01kq 1936 3 represented represent VBD cord-010027-r0tl01kq 1936 4 in in IN cord-010027-r0tl01kq 1936 5 2014 2014 CD cord-010027-r0tl01kq 1936 6 with with IN cord-010027-r0tl01kq 1936 7 aspiration aspiration NN cord-010027-r0tl01kq 1936 8 pneumonia pneumonia NN cord-010027-r0tl01kq 1936 9 on on IN cord-010027-r0tl01kq 1936 10 a a DT cord-010027-r0tl01kq 1936 11 seven seven CD cord-010027-r0tl01kq 1936 12 month month NN cord-010027-r0tl01kq 1936 13 history history NN cord-010027-r0tl01kq 1936 14 of of IN cord-010027-r0tl01kq 1936 15 dysphagia dysphagia NN cord-010027-r0tl01kq 1936 16 and and CC cord-010027-r0tl01kq 1936 17 dyspnea dyspnea NN cord-010027-r0tl01kq 1936 18 . . . cord-010027-r0tl01kq 1937 1 Xray Xray NNP cord-010027-r0tl01kq 1937 2 and and CC cord-010027-r0tl01kq 1937 3 subsequent subsequent JJ cord-010027-r0tl01kq 1937 4 computed compute VBN cord-010027-r0tl01kq 1937 5 tomography tomography NN cord-010027-r0tl01kq 1937 6 ( ( -LRB- cord-010027-r0tl01kq 1937 7 CT CT NNP cord-010027-r0tl01kq 1937 8 ) ) -RRB- cord-010027-r0tl01kq 1937 9 imaging imaging NN cord-010027-r0tl01kq 1937 10 identified identify VBD cord-010027-r0tl01kq 1937 11 large large JJ cord-010027-r0tl01kq 1937 12 , , , cord-010027-r0tl01kq 1937 13 multiple multiple JJ cord-010027-r0tl01kq 1937 14 right right JJ cord-010027-r0tl01kq 1937 15 sided sided JJ cord-010027-r0tl01kq 1937 16 lung lung NN cord-010027-r0tl01kq 1937 17 lesions lesion NNS cord-010027-r0tl01kq 1937 18 , , , cord-010027-r0tl01kq 1937 19 maximum maximum JJ cord-010027-r0tl01kq 1937 20 3 3 CD cord-010027-r0tl01kq 1937 21 cm cm NN cord-010027-r0tl01kq 1937 22 , , , cord-010027-r0tl01kq 1937 23 and and CC cord-010027-r0tl01kq 1937 24 a a DT cord-010027-r0tl01kq 1937 25 5.6 5.6 CD cord-010027-r0tl01kq 1937 26 cm cm NNS cord-010027-r0tl01kq 1937 27 left leave VBN cord-010027-r0tl01kq 1937 28 renal renal JJ cord-010027-r0tl01kq 1937 29 upper upper JJ cord-010027-r0tl01kq 1937 30 pole pole NN cord-010027-r0tl01kq 1937 31 mass mass NN cord-010027-r0tl01kq 1937 32 . . . cord-010027-r0tl01kq 1938 1 CT CT NNP cord-010027-r0tl01kq 1938 2 guided guide VBD cord-010027-r0tl01kq 1938 3 biopsy biopsy NN cord-010027-r0tl01kq 1938 4 of of IN cord-010027-r0tl01kq 1938 5 the the DT cord-010027-r0tl01kq 1938 6 right right JJ cord-010027-r0tl01kq 1938 7 lung lung NN cord-010027-r0tl01kq 1938 8 lesion lesion NN cord-010027-r0tl01kq 1938 9 and and CC cord-010027-r0tl01kq 1938 10 ultrasound ultrasound NN cord-010027-r0tl01kq 1938 11 guided guide VBN cord-010027-r0tl01kq 1938 12 biopsy biopsy NN cord-010027-r0tl01kq 1938 13 of of IN cord-010027-r0tl01kq 1938 14 the the DT cord-010027-r0tl01kq 1938 15 renal renal JJ cord-010027-r0tl01kq 1938 16 mass mass NN cord-010027-r0tl01kq 1938 17 were be VBD cord-010027-r0tl01kq 1938 18 reported report VBN cord-010027-r0tl01kq 1938 19 as as IN cord-010027-r0tl01kq 1938 20 metastatic metastatic JJ cord-010027-r0tl01kq 1938 21 adenoid adenoid NN cord-010027-r0tl01kq 1938 22 cystic cystic JJ cord-010027-r0tl01kq 1938 23 carcinoma carcinoma NN cord-010027-r0tl01kq 1938 24 Regan Regan NNP cord-010027-r0tl01kq 1938 25 3 3 CD cord-010027-r0tl01kq 1938 26 ; ; : cord-010027-r0tl01kq 1938 27 CM CM NNP cord-010027-r0tl01kq 1938 28 Martin Martin NNP cord-010027-r0tl01kq 1938 29 2 2 CD cord-010027-r0tl01kq 1938 30 ; ; : cord-010027-r0tl01kq 1938 31 CV CV NNP cord-010027-r0tl01kq 1938 32 Timon Timon NNP cord-010027-r0tl01kq 1938 33 3 3 CD cord-010027-r0tl01kq 1938 34 Cytokeratin Cytokeratin NNP cord-010027-r0tl01kq 1938 35 7 7 CD cord-010027-r0tl01kq 1938 36 ( ( -LRB- cord-010027-r0tl01kq 1938 37 CK7 CK7 NNP cord-010027-r0tl01kq 1938 38 ) ) -RRB- cord-010027-r0tl01kq 1938 39 is be VBZ cord-010027-r0tl01kq 1938 40 a a DT cord-010027-r0tl01kq 1938 41 junctional junctional JJ cord-010027-r0tl01kq 1938 42 biomarker biomarker NN cord-010027-r0tl01kq 1938 43 with with IN cord-010027-r0tl01kq 1938 44 a a DT cord-010027-r0tl01kq 1938 45 SEQIKA SEQIKA NNP cord-010027-r0tl01kq 1938 46 fragment fragment NN cord-010027-r0tl01kq 1938 47 which which WDT cord-010027-r0tl01kq 1938 48 stabilises stabilise VBZ cord-010027-r0tl01kq 1938 49 HPV-16 HPV-16 NNP cord-010027-r0tl01kq 1938 50 E7 E7 NNP cord-010027-r0tl01kq 1938 51 transcripts transcript NNS cord-010027-r0tl01kq 1938 52 . . . cord-010027-r0tl01kq 1939 1 We -PRON- PRP cord-010027-r0tl01kq 1939 2 assessed assess VBD cord-010027-r0tl01kq 1939 3 the the DT cord-010027-r0tl01kq 1939 4 expression expression NN cord-010027-r0tl01kq 1939 5 pattern pattern NN cord-010027-r0tl01kq 1939 6 of of IN cord-010027-r0tl01kq 1939 7 CK7 CK7 NNP cord-010027-r0tl01kq 1939 8 protein protein NN cord-010027-r0tl01kq 1939 9 in in IN cord-010027-r0tl01kq 1939 10 tumour tumour NN cord-010027-r0tl01kq 1939 11 specimens specimen NNS cord-010027-r0tl01kq 1939 12 from from IN cord-010027-r0tl01kq 1939 13 patients patient NNS cord-010027-r0tl01kq 1939 14 diagnosed diagnose VBN cord-010027-r0tl01kq 1939 15 with with IN cord-010027-r0tl01kq 1939 16 oropharyngeal oropharyngeal JJ cord-010027-r0tl01kq 1939 17 squamous squamous JJ cord-010027-r0tl01kq 1939 18 cell cell NN cord-010027-r0tl01kq 1939 19 carcinoma carcinoma NN cord-010027-r0tl01kq 1939 20 ( ( -LRB- cord-010027-r0tl01kq 1939 21 SCC SCC NNP cord-010027-r0tl01kq 1939 22 ) ) -RRB- cord-010027-r0tl01kq 1939 23 presenting present VBG cord-010027-r0tl01kq 1939 24 at at IN cord-010027-r0tl01kq 1939 25 two two CD cord-010027-r0tl01kq 1939 26 major major JJ cord-010027-r0tl01kq 1939 27 Irish irish JJ cord-010027-r0tl01kq 1939 28 head head NN cord-010027-r0tl01kq 1939 29 and and CC cord-010027-r0tl01kq 1939 30 neck neck NN cord-010027-r0tl01kq 1939 31 centres centre NNS cord-010027-r0tl01kq 1939 32 , , , cord-010027-r0tl01kq 1939 33 within within IN cord-010027-r0tl01kq 1939 34 the the DT cord-010027-r0tl01kq 1939 35 last last JJ cord-010027-r0tl01kq 1939 36 10 10 CD cord-010027-r0tl01kq 1939 37 years year NNS cord-010027-r0tl01kq 1939 38 . . . cord-010027-r0tl01kq 1940 1 Methods method NNS cord-010027-r0tl01kq 1940 2 : : : cord-010027-r0tl01kq 1941 1 Archived archived JJ cord-010027-r0tl01kq 1941 2 tumour tumour NN cord-010027-r0tl01kq 1941 3 specimens specimen NNS cord-010027-r0tl01kq 1941 4 together together RB cord-010027-r0tl01kq 1941 5 with with IN cord-010027-r0tl01kq 1941 6 epidemiological epidemiological JJ cord-010027-r0tl01kq 1941 7 data datum NNS cord-010027-r0tl01kq 1941 8 were be VBD cord-010027-r0tl01kq 1941 9 collected collect VBN cord-010027-r0tl01kq 1941 10 from from IN cord-010027-r0tl01kq 1941 11 patients patient NNS cord-010027-r0tl01kq 1941 12 presenting present VBG cord-010027-r0tl01kq 1941 13 with with IN cord-010027-r0tl01kq 1941 14 new new JJ cord-010027-r0tl01kq 1941 15 primary primary JJ cord-010027-r0tl01kq 1941 16 oropharyngeal oropharyngeal JJ cord-010027-r0tl01kq 1941 17 SCC SCC NNP cord-010027-r0tl01kq 1941 18 at at IN cord-010027-r0tl01kq 1941 19 two two CD cord-010027-r0tl01kq 1941 20 main main JJ cord-010027-r0tl01kq 1941 21 head head NN cord-010027-r0tl01kq 1941 22 and and CC cord-010027-r0tl01kq 1941 23 neck neck NN cord-010027-r0tl01kq 1941 24 centres centre NNS cord-010027-r0tl01kq 1941 25 in in IN cord-010027-r0tl01kq 1941 26 Ireland Ireland NNP cord-010027-r0tl01kq 1941 27 , , , cord-010027-r0tl01kq 1941 28 within within IN cord-010027-r0tl01kq 1941 29 the the DT cord-010027-r0tl01kq 1941 30 last last JJ cord-010027-r0tl01kq 1941 31 10 10 CD cord-010027-r0tl01kq 1941 32 years year NNS cord-010027-r0tl01kq 1941 33 . . . cord-010027-r0tl01kq 1942 1 Briefly briefly RB cord-010027-r0tl01kq 1942 2 , , , cord-010027-r0tl01kq 1942 3 DNA DNA NNP cord-010027-r0tl01kq 1942 4 was be VBD cord-010027-r0tl01kq 1942 5 extracted extract VBN cord-010027-r0tl01kq 1942 6 from from IN cord-010027-r0tl01kq 1942 7 tissue tissue NN cord-010027-r0tl01kq 1942 8 blocks block NNS cord-010027-r0tl01kq 1942 9 and and CC cord-010027-r0tl01kq 1942 10 HPV HPV NNP cord-010027-r0tl01kq 1942 11 testing testing NN cord-010027-r0tl01kq 1942 12 carried carry VBD cord-010027-r0tl01kq 1942 13 out out RP cord-010027-r0tl01kq 1942 14 using use VBG cord-010027-r0tl01kq 1942 15 SPF10 SPF10 `` cord-010027-r0tl01kq 1942 16 HPV HPV NNP cord-010027-r0tl01kq 1942 17 PCR PCR NNP cord-010027-r0tl01kq 1942 18 Immunohistochemical Immunohistochemical NNP cord-010027-r0tl01kq 1942 19 staining stain VBG cord-010027-r0tl01kq 1942 20 for for IN cord-010027-r0tl01kq 1942 21 CK7 CK7 NNP cord-010027-r0tl01kq 1942 22 [ [ -LRB- cord-010027-r0tl01kq 1942 23 Clone Clone NNP cord-010027-r0tl01kq 1942 24 SP52 SP52 NNP cord-010027-r0tl01kq 1942 25 , , , cord-010027-r0tl01kq 1942 26 Ventana Ventana NNP cord-010027-r0tl01kq 1942 27 ] ] -RRB- cord-010027-r0tl01kq 1942 28 was be VBD cord-010027-r0tl01kq 1942 29 performed perform VBN cord-010027-r0tl01kq 1942 30 on on IN cord-010027-r0tl01kq 1942 31 tissue tissue NN cord-010027-r0tl01kq 1942 32 blocks block NNS cord-010027-r0tl01kq 1942 33 following follow VBG cord-010027-r0tl01kq 1942 34 optimisation optimisation NN cord-010027-r0tl01kq 1942 35 on on IN cord-010027-r0tl01kq 1942 36 the the DT cord-010027-r0tl01kq 1942 37 Ventana Ventana NNP cord-010027-r0tl01kq 1942 38 BenchMark BenchMark NNP cord-010027-r0tl01kq 1942 39 Ultra Ultra NNP cord-010027-r0tl01kq 1942 40 Immunostainer Immunostainer NNP cord-010027-r0tl01kq 1942 41 . . . cord-010027-r0tl01kq 1943 1 Slides slide NNS cord-010027-r0tl01kq 1943 2 were be VBD cord-010027-r0tl01kq 1943 3 analysed analyse VBN cord-010027-r0tl01kq 1943 4 by by IN cord-010027-r0tl01kq 1943 5 light light JJ cord-010027-r0tl01kq 1943 6 microscopy microscopy NNS cord-010027-r0tl01kq 1943 7 and and CC cord-010027-r0tl01kq 1943 8 scored score VBD cord-010027-r0tl01kq 1943 9 using use VBG cord-010027-r0tl01kq 1943 10 the the DT cord-010027-r0tl01kq 1943 11 H h NN cord-010027-r0tl01kq 1943 12 scoring scoring NN cord-010027-r0tl01kq 1943 13 system system NN cord-010027-r0tl01kq 1943 14 with with IN cord-010027-r0tl01kq 1943 15 95 95 CD cord-010027-r0tl01kq 1943 16 % % NN cord-010027-r0tl01kq 1943 17 of of IN cord-010027-r0tl01kq 1943 18 these these DT cord-010027-r0tl01kq 1943 19 identified identify VBN cord-010027-r0tl01kq 1943 20 as as IN cord-010027-r0tl01kq 1943 21 HPV-16 HPV-16 NNP cord-010027-r0tl01kq 1943 22 subtype subtype NN cord-010027-r0tl01kq 1943 23 . . . cord-010027-r0tl01kq 1944 1 CK7 CK7 NNP cord-010027-r0tl01kq 1944 2 expression expression NN cord-010027-r0tl01kq 1944 3 was be VBD cord-010027-r0tl01kq 1944 4 observed observe VBN cord-010027-r0tl01kq 1944 5 in in IN cord-010027-r0tl01kq 1944 6 the the DT cord-010027-r0tl01kq 1944 7 tonsillar tonsillar JJ cord-010027-r0tl01kq 1944 8 crypt crypt NN cord-010027-r0tl01kq 1944 9 epithelium epithelium NN cord-010027-r0tl01kq 1944 10 of of IN cord-010027-r0tl01kq 1944 11 both both DT cord-010027-r0tl01kq 1944 12 normal normal JJ cord-010027-r0tl01kq 1944 13 tonsils tonsil NNS cord-010027-r0tl01kq 1944 14 and and CC cord-010027-r0tl01kq 1944 15 tumour tumour NN cord-010027-r0tl01kq 1944 16 specimens specimen NNS cord-010027-r0tl01kq 1944 17 . . . cord-010027-r0tl01kq 1945 1 56 56 CD cord-010027-r0tl01kq 1945 2 % % NN cord-010027-r0tl01kq 1945 3 of of IN cord-010027-r0tl01kq 1945 4 cases case NNS cord-010027-r0tl01kq 1945 5 were be VBD cord-010027-r0tl01kq 1945 6 positive positive JJ cord-010027-r0tl01kq 1945 7 for for IN cord-010027-r0tl01kq 1945 8 CK7 CK7 NNP cord-010027-r0tl01kq 1945 9 , , , cord-010027-r0tl01kq 1945 10 with with IN cord-010027-r0tl01kq 1945 11 38 38 CD cord-010027-r0tl01kq 1945 12 % % NN cord-010027-r0tl01kq 1945 13 of of IN cord-010027-r0tl01kq 1945 14 cases case NNS cord-010027-r0tl01kq 1945 15 demonstrating demonstrate VBG cord-010027-r0tl01kq 1945 16 H h NN cord-010027-r0tl01kq 1945 17 score score NN cord-010027-r0tl01kq 1945 18 of of IN cord-010027-r0tl01kq 1945 19 > > XX cord-010027-r0tl01kq 1945 20 60 60 CD cord-010027-r0tl01kq 1945 21 . . . cord-010027-r0tl01kq 1946 1 CK7 CK7 NNP cord-010027-r0tl01kq 1946 2 expression expression NN cord-010027-r0tl01kq 1946 3 in in IN cord-010027-r0tl01kq 1946 4 the the DT cord-010027-r0tl01kq 1946 5 tumour tumour NN cord-010027-r0tl01kq 1946 6 cells cell NNS cord-010027-r0tl01kq 1946 7 was be VBD cord-010027-r0tl01kq 1946 8 significantly significantly RB cord-010027-r0tl01kq 1946 9 linked link VBN cord-010027-r0tl01kq 1946 10 to to IN cord-010027-r0tl01kq 1946 11 HPV hpv NN cord-010027-r0tl01kq 1946 12 status status NN cord-010027-r0tl01kq 1946 13 and and CC cord-010027-r0tl01kq 1946 14 Our -PRON- PRP$ cord-010027-r0tl01kq 1946 15 results result NNS cord-010027-r0tl01kq 1946 16 suggest suggest VBP cord-010027-r0tl01kq 1946 17 that that IN cord-010027-r0tl01kq 1946 18 the the DT cord-010027-r0tl01kq 1946 19 expression expression NN cord-010027-r0tl01kq 1946 20 of of IN cord-010027-r0tl01kq 1946 21 CK7 CK7 NNP cord-010027-r0tl01kq 1946 22 in in IN cord-010027-r0tl01kq 1946 23 normal normal JJ cord-010027-r0tl01kq 1946 24 tonsillar tonsillar JJ cord-010027-r0tl01kq 1946 25 crypt crypt NN cord-010027-r0tl01kq 1946 26 epithelial epithelial JJ cord-010027-r0tl01kq 1946 27 cells cell NNS cord-010027-r0tl01kq 1946 28 provides provide VBZ cord-010027-r0tl01kq 1946 29 a a DT cord-010027-r0tl01kq 1946 30 selective selective JJ cord-010027-r0tl01kq 1946 31 advantage advantage NN cord-010027-r0tl01kq 1946 32 to to IN cord-010027-r0tl01kq 1946 33 HPV hpv NN cord-010027-r0tl01kq 1946 34 - - HYPH cord-010027-r0tl01kq 1946 35 related relate VBN cord-010027-r0tl01kq 1946 36 carcinogenesis carcinogenesis NN cord-010027-r0tl01kq 1946 37 at at IN cord-010027-r0tl01kq 1946 38 this this DT cord-010027-r0tl01kq 1946 39 site site NN cord-010027-r0tl01kq 1946 40 , , , cord-010027-r0tl01kq 1946 41 possible possible JJ cord-010027-r0tl01kq 1946 42 due due IN cord-010027-r0tl01kq 1946 43 to to IN cord-010027-r0tl01kq 1946 44 the the DT cord-010027-r0tl01kq 1946 45 unique unique JJ cord-010027-r0tl01kq 1946 46 propensity propensity NN cord-010027-r0tl01kq 1946 47 of of IN cord-010027-r0tl01kq 1946 48 CK7 CK7 NNP cord-010027-r0tl01kq 1946 49 to to TO cord-010027-r0tl01kq 1946 50 bind bind VB cord-010027-r0tl01kq 1946 51 and and CC cord-010027-r0tl01kq 1946 52 stabilise stabilise VB cord-010027-r0tl01kq 1946 53 HPV-16 HPV-16 NNP cord-010027-r0tl01kq 1946 54 E7 E7 NNP cord-010027-r0tl01kq 1946 55 transcripts transcript NNS cord-010027-r0tl01kq 1946 56 Regan Regan NNP cord-010027-r0tl01kq 1946 57 3 3 CD cord-010027-r0tl01kq 1946 58 ; ; : cord-010027-r0tl01kq 1946 59 CM CM NNP cord-010027-r0tl01kq 1946 60 Martin Martin NNP cord-010027-r0tl01kq 1946 61 2 2 CD cord-010027-r0tl01kq 1946 62 ; ; : cord-010027-r0tl01kq 1946 63 CV CV NNP cord-010027-r0tl01kq 1946 64 Timon Timon NNP cord-010027-r0tl01kq 1946 65 3 3 CD cord-010027-r0tl01kq 1946 66 Methods Methods NNPS cord-010027-r0tl01kq 1946 67 : : : cord-010027-r0tl01kq 1946 68 Archived Archived NNP cord-010027-r0tl01kq 1946 69 HPV hpv NN cord-010027-r0tl01kq 1946 70 - - HYPH cord-010027-r0tl01kq 1946 71 positive positive JJ cord-010027-r0tl01kq 1946 72 tumour tumour NN cord-010027-r0tl01kq 1946 73 specimens specimen NNS cord-010027-r0tl01kq 1946 74 and and CC cord-010027-r0tl01kq 1946 75 epidemiological epidemiological JJ cord-010027-r0tl01kq 1946 76 data datum NNS cord-010027-r0tl01kq 1946 77 were be VBD cord-010027-r0tl01kq 1946 78 collected collect VBN cord-010027-r0tl01kq 1946 79 from from IN cord-010027-r0tl01kq 1946 80 patients patient NNS cord-010027-r0tl01kq 1946 81 presenting present VBG cord-010027-r0tl01kq 1946 82 with with IN cord-010027-r0tl01kq 1946 83 new new JJ cord-010027-r0tl01kq 1946 84 primary primary JJ cord-010027-r0tl01kq 1946 85 oropharyngeal oropharyngeal JJ cord-010027-r0tl01kq 1946 86 SCC SCC NNP cord-010027-r0tl01kq 1946 87 at at IN cord-010027-r0tl01kq 1946 88 two two CD cord-010027-r0tl01kq 1946 89 head head NN cord-010027-r0tl01kq 1946 90 and and CC cord-010027-r0tl01kq 1946 91 neck neck NN cord-010027-r0tl01kq 1946 92 centres centre NNS cord-010027-r0tl01kq 1946 93 in in IN cord-010027-r0tl01kq 1946 94 Ireland Ireland NNP cord-010027-r0tl01kq 1946 95 over over IN cord-010027-r0tl01kq 1946 96 a a DT cord-010027-r0tl01kq 1946 97 one one CD cord-010027-r0tl01kq 1946 98 year year NN cord-010027-r0tl01kq 1946 99 period period NN cord-010027-r0tl01kq 1946 100 . . . cord-010027-r0tl01kq 1947 1 Briefly briefly RB cord-010027-r0tl01kq 1947 2 , , , cord-010027-r0tl01kq 1947 3 DNA DNA NNP cord-010027-r0tl01kq 1947 4 was be VBD cord-010027-r0tl01kq 1947 5 extracted extract VBN cord-010027-r0tl01kq 1947 6 from from IN cord-010027-r0tl01kq 1947 7 tissue tissue NN cord-010027-r0tl01kq 1947 8 blocks block NNS cord-010027-r0tl01kq 1947 9 and and CC cord-010027-r0tl01kq 1947 10 HPV HPV NNP cord-010027-r0tl01kq 1947 11 testing testing NN cord-010027-r0tl01kq 1947 12 carried carry VBD cord-010027-r0tl01kq 1947 13 out out RP cord-010027-r0tl01kq 1947 14 using use VBG cord-010027-r0tl01kq 1947 15 SPF10 SPF10 `` cord-010027-r0tl01kq 1947 16 HPV HPV NNP cord-010027-r0tl01kq 1947 17 PCR PCR NNP cord-010027-r0tl01kq 1947 18 . . . cord-010027-r0tl01kq 1948 1 The the DT cord-010027-r0tl01kq 1948 2 INNO INNO NNP cord-010027-r0tl01kq 1948 3 - - JJ cord-010027-r0tl01kq 1948 4 LiPA LiPA NNP cord-010027-r0tl01kq 1948 5 HPV HPV NNP cord-010027-r0tl01kq 1948 6 Genotyping Genotyping NNP cord-010027-r0tl01kq 1948 7 Extra Extra NNP cord-010027-r0tl01kq 1948 8 test test NN cord-010027-r0tl01kq 1948 9 [ [ -LRB- cord-010027-r0tl01kq 1948 10 Fujirebio Fujirebio NNP cord-010027-r0tl01kq 1948 11 ] ] -RRB- cord-010027-r0tl01kq 1948 12 was be VBD cord-010027-r0tl01kq 1948 13 used use VBN cord-010027-r0tl01kq 1948 14 to to TO cord-010027-r0tl01kq 1948 15 determine determine VB cord-010027-r0tl01kq 1948 16 genotype genotype NN cord-010027-r0tl01kq 1948 17 . . . cord-010027-r0tl01kq 1949 1 Immunohistochemical immunohistochemical JJ cord-010027-r0tl01kq 1949 2 staining stain VBG cord-010027-r0tl01kq 1949 3 for for IN cord-010027-r0tl01kq 1949 4 CK7 CK7 NNP cord-010027-r0tl01kq 1949 5 , , , cord-010027-r0tl01kq 1949 6 GDA GDA NNP cord-010027-r0tl01kq 1949 7 , , , cord-010027-r0tl01kq 1949 8 MMP-7 MMP-7 NNP cord-010027-r0tl01kq 1949 9 , , , cord-010027-r0tl01kq 1949 10 AGR-2 AGR-2 NNP cord-010027-r0tl01kq 1949 11 , , , cord-010027-r0tl01kq 1949 12 PD-1 PD-1 NNP cord-010027-r0tl01kq 1949 13 and and CC cord-010027-r0tl01kq 1949 14 PD PD NNP cord-010027-r0tl01kq 1949 15 - - HYPH cord-010027-r0tl01kq 1949 16 L1 L1 NNP cord-010027-r0tl01kq 1949 17 was be VBD cord-010027-r0tl01kq 1949 18 performed perform VBN cord-010027-r0tl01kq 1949 19 following follow VBG cord-010027-r0tl01kq 1949 20 optimisation optimisation NN cord-010027-r0tl01kq 1949 21 . . . cord-010027-r0tl01kq 1950 1 Slides slide NNS cord-010027-r0tl01kq 1950 2 were be VBD cord-010027-r0tl01kq 1950 3 analysed analyse VBN cord-010027-r0tl01kq 1950 4 by by IN cord-010027-r0tl01kq 1950 5 light light JJ cord-010027-r0tl01kq 1950 6 microscopy microscopy NNS cord-010027-r0tl01kq 1950 7 and and CC cord-010027-r0tl01kq 1950 8 scored score VBD cord-010027-r0tl01kq 1950 9 using use VBG cord-010027-r0tl01kq 1950 10 the the DT cord-010027-r0tl01kq 1950 11 H h NN cord-010027-r0tl01kq 1950 12 scoring scoring NN cord-010027-r0tl01kq 1950 13 system system NN cord-010027-r0tl01kq 1950 14 ( ( -LRB- cord-010027-r0tl01kq 1950 15 junctional junctional JJ cord-010027-r0tl01kq 1950 16 biomarkers biomarker NNS cord-010027-r0tl01kq 1950 17 ) ) -RRB- cord-010027-r0tl01kq 1951 1 Frozen Frozen NNP cord-010027-r0tl01kq 1951 2 Section Section NNP cord-010027-r0tl01kq 1951 3 Reporting Reporting NNP cord-010027-r0tl01kq 1951 4 of of IN cord-010027-r0tl01kq 1951 5 Necrotising Necrotising NNP cord-010027-r0tl01kq 1951 6 Granuloma Granuloma NNP cord-010027-r0tl01kq 1951 7 of of IN cord-010027-r0tl01kq 1951 8 the the DT cord-010027-r0tl01kq 1951 9 Liver liver NN cord-010027-r0tl01kq 1952 1 Following follow VBG cord-010027-r0tl01kq 1952 2 Percutaneous Percutaneous NNP cord-010027-r0tl01kq 1952 3 Instrumentation Instrumentation NNP cord-010027-r0tl01kq 1952 4 of of IN cord-010027-r0tl01kq 1952 5 The the DT cord-010027-r0tl01kq 1952 6 Biliary Biliary NNP cord-010027-r0tl01kq 1952 7 Tree Tree NNP cord-010027-r0tl01kq 1952 8 : : : cord-010027-r0tl01kq 1953 1 A a DT cord-010027-r0tl01kq 1953 2 Case Case NNP cord-010027-r0tl01kq 1953 3 Series Series NNP cord-010027-r0tl01kq 1953 4 EH EH NNP cord-010027-r0tl01kq 1953 5 Hadjimichael Hadjimichael NNP cord-010027-r0tl01kq 1953 6 ; ; : cord-010027-r0tl01kq 1953 7 P p NN cord-010027-r0tl01kq 1953 8 DF DF NNP cord-010027-r0tl01kq 1953 9 Fielding Fielding NNP cord-010027-r0tl01kq 1953 10 ; ; : cord-010027-r0tl01kq 1953 11 MI MI NNP cord-010027-r0tl01kq 1953 12 Ilyas Ilyas NNP cord-010027-r0tl01kq 1953 13 ; ; : cord-010027-r0tl01kq 1953 14 AZ AZ NNP cord-010027-r0tl01kq 1953 15 Zaitoun Zaitoun NNP cord-010027-r0tl01kq 1953 16 ; ; : cord-010027-r0tl01kq 1953 17 DL DL NNP cord-010027-r0tl01kq 1953 18 Lobo Lobo NNP cord-010027-r0tl01kq 1953 19 ; ; : cord-010027-r0tl01kq 1953 20 PK PK NNP cord-010027-r0tl01kq 1953 21 Kaye Kaye NNP cord-010027-r0tl01kq 1953 22 Nottingham Nottingham NNP cord-010027-r0tl01kq 1953 23 University University NNP cord-010027-r0tl01kq 1953 24 Hospital Hospital NNP cord-010027-r0tl01kq 1953 25 , , , cord-010027-r0tl01kq 1953 26 Nottingham Nottingham NNP cord-010027-r0tl01kq 1953 27 , , , cord-010027-r0tl01kq 1953 28 UK UK NNP cord-010027-r0tl01kq 1953 29 Percutaneous Percutaneous NNP cord-010027-r0tl01kq 1953 30 transhepatic transhepatic JJ cord-010027-r0tl01kq 1953 31 cholangiography cholangiography NN cord-010027-r0tl01kq 1953 32 ( ( -LRB- cord-010027-r0tl01kq 1953 33 PTC PTC NNP cord-010027-r0tl01kq 1953 34 ) ) -RRB- cord-010027-r0tl01kq 1953 35 is be VBZ cord-010027-r0tl01kq 1953 36 an an DT cord-010027-r0tl01kq 1953 37 interventional interventional JJ cord-010027-r0tl01kq 1953 38 radiological radiological JJ cord-010027-r0tl01kq 1953 39 technique technique NN cord-010027-r0tl01kq 1953 40 for for IN cord-010027-r0tl01kq 1953 41 both both CC cord-010027-r0tl01kq 1953 42 diagnostic diagnostic JJ cord-010027-r0tl01kq 1953 43 imaging imaging NN cord-010027-r0tl01kq 1953 44 and and CC cord-010027-r0tl01kq 1953 45 therapeutic therapeutic JJ cord-010027-r0tl01kq 1953 46 decompression decompression NN cord-010027-r0tl01kq 1953 47 of of IN cord-010027-r0tl01kq 1953 48 the the DT cord-010027-r0tl01kq 1953 49 proximal proximal JJ cord-010027-r0tl01kq 1953 50 biliary biliary JJ cord-010027-r0tl01kq 1953 51 tract tract NN cord-010027-r0tl01kq 1953 52 in in IN cord-010027-r0tl01kq 1953 53 malignant malignant JJ cord-010027-r0tl01kq 1953 54 distal distal JJ cord-010027-r0tl01kq 1953 55 obstruction obstruction NN cord-010027-r0tl01kq 1953 56 when when WRB cord-010027-r0tl01kq 1953 57 retrograde retrograde JJ cord-010027-r0tl01kq 1953 58 techniques technique NNS cord-010027-r0tl01kq 1953 59 fail fail VBP cord-010027-r0tl01kq 1953 60 . . . cord-010027-r0tl01kq 1954 1 Recognised recognise VBN cord-010027-r0tl01kq 1954 2 complications complication NNS cord-010027-r0tl01kq 1954 3 of of IN cord-010027-r0tl01kq 1954 4 PTC PTC NNP cord-010027-r0tl01kq 1954 5 include include VBP cord-010027-r0tl01kq 1954 6 sepsis sepsis NN cord-010027-r0tl01kq 1954 7 , , , cord-010027-r0tl01kq 1954 8 haemorrhage haemorrhage NN cord-010027-r0tl01kq 1954 9 and and CC cord-010027-r0tl01kq 1954 10 pneumothorax pneumothorax NN cord-010027-r0tl01kq 1954 11 . . . cord-010027-r0tl01kq 1955 1 We -PRON- PRP cord-010027-r0tl01kq 1955 2 describe describe VBP cord-010027-r0tl01kq 1955 3 four four CD cord-010027-r0tl01kq 1955 4 cases case NNS cord-010027-r0tl01kq 1955 5 where where WRB cord-010027-r0tl01kq 1955 6 necrotising necrotise VBG cord-010027-r0tl01kq 1955 7 granuloma granuloma NN cord-010027-r0tl01kq 1955 8 , , , cord-010027-r0tl01kq 1955 9 apparently apparently RB cord-010027-r0tl01kq 1955 10 secondary secondary JJ cord-010027-r0tl01kq 1955 11 to to IN cord-010027-r0tl01kq 1955 12 previous previous JJ cord-010027-r0tl01kq 1955 13 PTC PTC NNP cord-010027-r0tl01kq 1955 14 , , , cord-010027-r0tl01kq 1955 15 has have VBZ cord-010027-r0tl01kq 1955 16 resulted result VBN cord-010027-r0tl01kq 1955 17 in in IN cord-010027-r0tl01kq 1955 18 frozen frozen JJ cord-010027-r0tl01kq 1955 19 section section NN cord-010027-r0tl01kq 1955 20 examination examination NN cord-010027-r0tl01kq 1955 21 at at IN cord-010027-r0tl01kq 1955 22 the the DT cord-010027-r0tl01kq 1955 23 time time NN cord-010027-r0tl01kq 1955 24 of of IN cord-010027-r0tl01kq 1955 25 subsequent subsequent JJ cord-010027-r0tl01kq 1955 26 planned plan VBN cord-010027-r0tl01kq 1955 27 cancer cancer NN cord-010027-r0tl01kq 1955 28 resection resection NN cord-010027-r0tl01kq 1955 29 , , , cord-010027-r0tl01kq 1955 30 to to TO cord-010027-r0tl01kq 1955 31 exclude exclude VB cord-010027-r0tl01kq 1955 32 tumour tumour NN cord-010027-r0tl01kq 1955 33 metastasis metastasis NN cord-010027-r0tl01kq 1955 34 . . . cord-010027-r0tl01kq 1956 1 Four four CD cord-010027-r0tl01kq 1956 2 cases case NNS cord-010027-r0tl01kq 1956 3 of of IN cord-010027-r0tl01kq 1956 4 necrotising necrotise VBG cord-010027-r0tl01kq 1956 5 granuloma granuloma NN cord-010027-r0tl01kq 1956 6 in in IN cord-010027-r0tl01kq 1956 7 the the DT cord-010027-r0tl01kq 1956 8 liver liver NN cord-010027-r0tl01kq 1956 9 have have VBP cord-010027-r0tl01kq 1956 10 been be VBN cord-010027-r0tl01kq 1956 11 identified identify VBN cord-010027-r0tl01kq 1956 12 between between IN cord-010027-r0tl01kq 1956 13 January January NNP cord-010027-r0tl01kq 1956 14 2013 2013 CD cord-010027-r0tl01kq 1956 15 and and CC cord-010027-r0tl01kq 1956 16 February February NNP cord-010027-r0tl01kq 1956 17 2015 2015 CD cord-010027-r0tl01kq 1956 18 . . . cord-010027-r0tl01kq 1957 1 All all DT cord-010027-r0tl01kq 1957 2 cases case NNS cord-010027-r0tl01kq 1957 3 were be VBD cord-010027-r0tl01kq 1957 4 planned plan VBN cord-010027-r0tl01kq 1957 5 Whipple Whipple NNP cord-010027-r0tl01kq 1957 6 's 's POS cord-010027-r0tl01kq 1957 7 procedures procedure NNS cord-010027-r0tl01kq 1957 8 for for IN cord-010027-r0tl01kq 1957 9 pancreatic pancreatic JJ cord-010027-r0tl01kq 1957 10 cancer cancer NN cord-010027-r0tl01kq 1957 11 where where WRB cord-010027-r0tl01kq 1957 12 initial initial JJ cord-010027-r0tl01kq 1957 13 intraoperative intraoperative JJ cord-010027-r0tl01kq 1957 14 evaluation evaluation NN cord-010027-r0tl01kq 1957 15 revealed reveal VBD cord-010027-r0tl01kq 1957 16 solitary solitary JJ cord-010027-r0tl01kq 1957 17 subcapsular subcapsular NNP cord-010027-r0tl01kq 1957 18 liver liver NN cord-010027-r0tl01kq 1957 19 lesions lesion NNS cord-010027-r0tl01kq 1957 20 . . . cord-010027-r0tl01kq 1958 1 Biopsy biopsy JJ cord-010027-r0tl01kq 1958 2 and and CC cord-010027-r0tl01kq 1958 3 intraoperative intraoperative JJ cord-010027-r0tl01kq 1958 4 frozen frozen JJ cord-010027-r0tl01kq 1958 5 section section NN cord-010027-r0tl01kq 1958 6 examination examination NN cord-010027-r0tl01kq 1958 7 were be VBD cord-010027-r0tl01kq 1958 8 performed perform VBN cord-010027-r0tl01kq 1958 9 to to TO cord-010027-r0tl01kq 1958 10 exclude exclude VB cord-010027-r0tl01kq 1958 11 metastatic metastatic JJ cord-010027-r0tl01kq 1958 12 disease disease NN cord-010027-r0tl01kq 1958 13 . . . cord-010027-r0tl01kq 1959 1 All all DT cord-010027-r0tl01kq 1959 2 frozen frozen JJ cord-010027-r0tl01kq 1959 3 sections section NNS cord-010027-r0tl01kq 1959 4 except except IN cord-010027-r0tl01kq 1959 5 one one CD cord-010027-r0tl01kq 1959 6 were be VBD cord-010027-r0tl01kq 1959 7 reported report VBN cord-010027-r0tl01kq 1959 8 as as IN cord-010027-r0tl01kq 1959 9 showing show VBG cord-010027-r0tl01kq 1959 10 benign benign JJ cord-010027-r0tl01kq 1959 11 necrotizing necrotize VBG cord-010027-r0tl01kq 1959 12 granuloma granuloma NN cord-010027-r0tl01kq 1959 13 formation formation NN cord-010027-r0tl01kq 1959 14 . . . cord-010027-r0tl01kq 1960 1 The the DT cord-010027-r0tl01kq 1960 2 first first JJ cord-010027-r0tl01kq 1960 3 case case NN cord-010027-r0tl01kq 1960 4 was be VBD cord-010027-r0tl01kq 1960 5 initially initially RB cord-010027-r0tl01kq 1960 6 reported report VBN cord-010027-r0tl01kq 1960 7 as as IN cord-010027-r0tl01kq 1960 8 malignant malignant JJ cord-010027-r0tl01kq 1960 9 and and CC cord-010027-r0tl01kq 1960 10 the the DT cord-010027-r0tl01kq 1960 11 operation operation NN cord-010027-r0tl01kq 1960 12 was be VBD cord-010027-r0tl01kq 1960 13 abandoned abandon VBN cord-010027-r0tl01kq 1960 14 . . . cord-010027-r0tl01kq 1961 1 A a DT cord-010027-r0tl01kq 1961 2 benign benign JJ cord-010027-r0tl01kq 1961 3 diagnosis diagnosis NN cord-010027-r0tl01kq 1961 4 was be VBD cord-010027-r0tl01kq 1961 5 confirmed confirm VBN cord-010027-r0tl01kq 1961 6 on on IN cord-010027-r0tl01kq 1961 7 paraffin paraffin NN cord-010027-r0tl01kq 1961 8 sections section NNS cord-010027-r0tl01kq 1961 9 in in IN cord-010027-r0tl01kq 1961 10 all all DT cord-010027-r0tl01kq 1961 11 four four CD cord-010027-r0tl01kq 1961 12 cases case NNS cord-010027-r0tl01kq 1961 13 with with IN cord-010027-r0tl01kq 1961 14 the the DT cord-010027-r0tl01kq 1961 15 first first JJ cord-010027-r0tl01kq 1961 16 patient patient NN cord-010027-r0tl01kq 1961 17 undergoing undergo VBG cord-010027-r0tl01kq 1961 18 successful successful JJ cord-010027-r0tl01kq 1961 19 surgical surgical JJ cord-010027-r0tl01kq 1961 20 resection resection NN cord-010027-r0tl01kq 1961 21 at at IN cord-010027-r0tl01kq 1961 22 a a DT cord-010027-r0tl01kq 1961 23 later later JJ cord-010027-r0tl01kq 1961 24 date date NN cord-010027-r0tl01kq 1961 25 . . . cord-010027-r0tl01kq 1962 1 To to IN cord-010027-r0tl01kq 1962 2 the the DT cord-010027-r0tl01kq 1962 3 best good JJS cord-010027-r0tl01kq 1962 4 of of IN cord-010027-r0tl01kq 1962 5 our -PRON- PRP$ cord-010027-r0tl01kq 1962 6 knowledge knowledge NN cord-010027-r0tl01kq 1962 7 these these DT cord-010027-r0tl01kq 1962 8 are be VBP cord-010027-r0tl01kq 1962 9 the the DT cord-010027-r0tl01kq 1962 10 first first JJ cord-010027-r0tl01kq 1962 11 reported report VBN cord-010027-r0tl01kq 1962 12 cases case NNS cord-010027-r0tl01kq 1962 13 of of IN cord-010027-r0tl01kq 1962 14 necrotising necrotise VBG cord-010027-r0tl01kq 1962 15 granuloma granuloma NN cord-010027-r0tl01kq 1962 16 in in IN cord-010027-r0tl01kq 1962 17 the the DT cord-010027-r0tl01kq 1962 18 liver liver NN cord-010027-r0tl01kq 1962 19 secondary secondary JJ cord-010027-r0tl01kq 1962 20 to to IN cord-010027-r0tl01kq 1962 21 prior prior JJ cord-010027-r0tl01kq 1962 22 instrumentation instrumentation NN cord-010027-r0tl01kq 1962 23 of of IN cord-010027-r0tl01kq 1962 24 the the DT cord-010027-r0tl01kq 1962 25 liver liver NN cord-010027-r0tl01kq 1962 26 and and CC cord-010027-r0tl01kq 1962 27 leading lead VBG cord-010027-r0tl01kq 1962 28 to to IN cord-010027-r0tl01kq 1962 29 intraoperative intraoperative JJ cord-010027-r0tl01kq 1962 30 histological histological JJ cord-010027-r0tl01kq 1962 31 assessment assessment NN cord-010027-r0tl01kq 1962 32 . . . cord-010027-r0tl01kq 1963 1 We -PRON- PRP cord-010027-r0tl01kq 1963 2 highlight highlight VBP cord-010027-r0tl01kq 1963 3 this this DT cord-010027-r0tl01kq 1963 4 as as IN cord-010027-r0tl01kq 1963 5 a a DT cord-010027-r0tl01kq 1963 6 potential potential JJ cord-010027-r0tl01kq 1963 7 pitfall pitfall NN cord-010027-r0tl01kq 1963 8 in in IN cord-010027-r0tl01kq 1963 9 frozen frozen JJ cord-010027-r0tl01kq 1963 10 section section NN cord-010027-r0tl01kq 1963 11 interpretation interpretation NN cord-010027-r0tl01kq 1963 12 undertaken undertake VBN cord-010027-r0tl01kq 1963 13 ahead ahead RB cord-010027-r0tl01kq 1963 14 of of IN cord-010027-r0tl01kq 1963 15 planned plan VBN cord-010027-r0tl01kq 1963 16 potentially potentially RB cord-010027-r0tl01kq 1963 17 curative curative JJ cord-010027-r0tl01kq 1963 18 surgery surgery NN cord-010027-r0tl01kq 1963 19 which which WDT cord-010027-r0tl01kq 1963 20 can can MD cord-010027-r0tl01kq 1963 21 lead lead VB cord-010027-r0tl01kq 1963 22 to to IN cord-010027-r0tl01kq 1963 23 overstaging overstaging NN cord-010027-r0tl01kq 1963 24 of of IN cord-010027-r0tl01kq 1963 25 otherwise otherwise RB cord-010027-r0tl01kq 1963 26 resectable resectable JJ cord-010027-r0tl01kq 1963 27 disease disease NN cord-010027-r0tl01kq 1963 28 or or CC cord-010027-r0tl01kq 1963 29 to to IN cord-010027-r0tl01kq 1963 30 the the DT cord-010027-r0tl01kq 1963 31 interpretation interpretation NN cord-010027-r0tl01kq 1963 32 of of IN cord-010027-r0tl01kq 1963 33 a a DT cord-010027-r0tl01kq 1963 34 potential potential JJ cord-010027-r0tl01kq 1963 35 diagnosis diagnosis NN cord-010027-r0tl01kq 1963 36 of of IN cord-010027-r0tl01kq 1963 37 tuberculosis tuberculosis NN cord-010027-r0tl01kq 1963 38 . . . cord-010027-r0tl01kq 1964 1 These these DT cord-010027-r0tl01kq 1964 2 risks risk NNS cord-010027-r0tl01kq 1964 3 can can MD cord-010027-r0tl01kq 1964 4 be be VB cord-010027-r0tl01kq 1964 5 reduced reduce VBN cord-010027-r0tl01kq 1964 6 with with IN cord-010027-r0tl01kq 1964 7 greater great JJR cord-010027-r0tl01kq 1964 8 surgical surgical JJ cord-010027-r0tl01kq 1964 9 and and CC cord-010027-r0tl01kq 1964 10 pathological pathological JJ cord-010027-r0tl01kq 1964 11 awareness awareness NN cord-010027-r0tl01kq 1964 12 of of IN cord-010027-r0tl01kq 1964 13 this this DT cord-010027-r0tl01kq 1964 14 entity entity NN cord-010027-r0tl01kq 1964 15 . . . cord-010027-r0tl01kq 1965 1 Inclusion inclusion NN cord-010027-r0tl01kq 1965 2 body body NN cord-010027-r0tl01kq 1965 3 fibromatosis fibromatosis NN cord-010027-r0tl01kq 1965 4 , , , cord-010027-r0tl01kq 1965 5 also also RB cord-010027-r0tl01kq 1965 6 known know VBN cord-010027-r0tl01kq 1965 7 as as IN cord-010027-r0tl01kq 1965 8 infantile infantile JJ cord-010027-r0tl01kq 1965 9 digital digital JJ cord-010027-r0tl01kq 1965 10 fibroma fibroma NN cord-010027-r0tl01kq 1965 11 , , , cord-010027-r0tl01kq 1965 12 is be VBZ cord-010027-r0tl01kq 1965 13 a a DT cord-010027-r0tl01kq 1965 14 benign benign JJ cord-010027-r0tl01kq 1965 15 , , , cord-010027-r0tl01kq 1965 16 predominantly predominantly RB cord-010027-r0tl01kq 1965 17 myofibroblastic myofibroblastic JJ cord-010027-r0tl01kq 1965 18 tumour tumour NN cord-010027-r0tl01kq 1965 19 primarily primarily RB cord-010027-r0tl01kq 1965 20 found find VBD cord-010027-r0tl01kq 1965 21 on on IN cord-010027-r0tl01kq 1965 22 the the DT cord-010027-r0tl01kq 1965 23 digits digit NNS cord-010027-r0tl01kq 1965 24 of of IN cord-010027-r0tl01kq 1965 25 infants infant NNS cord-010027-r0tl01kq 1965 26 . . . cord-010027-r0tl01kq 1966 1 Clinically clinically RB cord-010027-r0tl01kq 1966 2 , , , cord-010027-r0tl01kq 1966 3 these these DT cord-010027-r0tl01kq 1966 4 lesions lesion NNS cord-010027-r0tl01kq 1966 5 present present JJ cord-010027-r0tl01kq 1966 6 as as IN cord-010027-r0tl01kq 1966 7 asymptomatic asymptomatic JJ cord-010027-r0tl01kq 1966 8 cutaneous cutaneous JJ cord-010027-r0tl01kq 1966 9 nodules nodule NNS cord-010027-r0tl01kq 1966 10 , , , cord-010027-r0tl01kq 1966 11 rarely rarely RB cord-010027-r0tl01kq 1966 12 larger large JJR cord-010027-r0tl01kq 1966 13 than than IN cord-010027-r0tl01kq 1966 14 2 2 CD cord-010027-r0tl01kq 1966 15 cm cm NNS cord-010027-r0tl01kq 1966 16 in in IN cord-010027-r0tl01kq 1966 17 size size NN cord-010027-r0tl01kq 1966 18 , , , cord-010027-r0tl01kq 1966 19 classically classically RB cord-010027-r0tl01kq 1966 20 on on IN cord-010027-r0tl01kq 1966 21 the the DT cord-010027-r0tl01kq 1966 22 dorsal dorsal JJ cord-010027-r0tl01kq 1966 23 or or CC cord-010027-r0tl01kq 1966 24 dorsolateral dorsolateral JJ cord-010027-r0tl01kq 1966 25 aspect aspect NN cord-010027-r0tl01kq 1966 26 of of IN cord-010027-r0tl01kq 1966 27 the the DT cord-010027-r0tl01kq 1966 28 second second JJ cord-010027-r0tl01kq 1966 29 , , , cord-010027-r0tl01kq 1966 30 third third JJ cord-010027-r0tl01kq 1966 31 and and CC cord-010027-r0tl01kq 1966 32 forth forth RB cord-010027-r0tl01kq 1966 33 digits digit NNS cord-010027-r0tl01kq 1966 34 . . . cord-010027-r0tl01kq 1967 1 They -PRON- PRP cord-010027-r0tl01kq 1967 2 have have VBP cord-010027-r0tl01kq 1967 3 a a DT cord-010027-r0tl01kq 1967 4 high high JJ cord-010027-r0tl01kq 1967 5 recurrence recurrence NN cord-010027-r0tl01kq 1967 6 rate rate NN cord-010027-r0tl01kq 1967 7 , , , cord-010027-r0tl01kq 1967 8 reported report VBD cord-010027-r0tl01kq 1967 9 as as IN cord-010027-r0tl01kq 1967 10 between between IN cord-010027-r0tl01kq 1967 11 61 61 CD cord-010027-r0tl01kq 1967 12 and and CC cord-010027-r0tl01kq 1967 13 75 75 CD cord-010027-r0tl01kq 1967 14 % % NN cord-010027-r0tl01kq 1967 15 , , , cord-010027-r0tl01kq 1967 16 although although IN cord-010027-r0tl01kq 1967 17 this this DT cord-010027-r0tl01kq 1967 18 can can MD cord-010027-r0tl01kq 1967 19 be be VB cord-010027-r0tl01kq 1967 20 reduced reduce VBN cord-010027-r0tl01kq 1967 21 by by IN cord-010027-r0tl01kq 1967 22 undertaking undertake VBG cord-010027-r0tl01kq 1967 23 complete complete JJ cord-010027-r0tl01kq 1967 24 wide wide JJ cord-010027-r0tl01kq 1967 25 local local JJ cord-010027-r0tl01kq 1967 26 excision excision NN cord-010027-r0tl01kq 1967 27 . . . cord-010027-r0tl01kq 1968 1 We -PRON- PRP cord-010027-r0tl01kq 1968 2 report report VBP cord-010027-r0tl01kq 1968 3 a a DT cord-010027-r0tl01kq 1968 4 case case NN cord-010027-r0tl01kq 1968 5 of of IN cord-010027-r0tl01kq 1968 6 inclusion inclusion NN cord-010027-r0tl01kq 1968 7 body body NN cord-010027-r0tl01kq 1968 8 fibromatosis fibromatosis NN cord-010027-r0tl01kq 1968 9 in in IN cord-010027-r0tl01kq 1968 10 an an DT cord-010027-r0tl01kq 1968 11 11 11 CD cord-010027-r0tl01kq 1968 12 month month NN cord-010027-r0tl01kq 1968 13 - - HYPH cord-010027-r0tl01kq 1968 14 old old JJ cord-010027-r0tl01kq 1968 15 boy boy NN cord-010027-r0tl01kq 1968 16 , , , cord-010027-r0tl01kq 1968 17 presenting present VBG cord-010027-r0tl01kq 1968 18 with with IN cord-010027-r0tl01kq 1968 19 an an DT cord-010027-r0tl01kq 1968 20 enlarging enlarge VBG cord-010027-r0tl01kq 1968 21 , , , cord-010027-r0tl01kq 1968 22 firm firm JJ cord-010027-r0tl01kq 1968 23 lesion lesion NN cord-010027-r0tl01kq 1968 24 on on IN cord-010027-r0tl01kq 1968 25 his -PRON- PRP$ cord-010027-r0tl01kq 1968 26 left left JJ cord-010027-r0tl01kq 1968 27 second second JJ cord-010027-r0tl01kq 1968 28 toe toe NN cord-010027-r0tl01kq 1968 29 . . . cord-010027-r0tl01kq 1969 1 Following follow VBG cord-010027-r0tl01kq 1969 2 surgical surgical JJ cord-010027-r0tl01kq 1969 3 excision excision NN cord-010027-r0tl01kq 1969 4 , , , cord-010027-r0tl01kq 1969 5 the the DT cord-010027-r0tl01kq 1969 6 lesion lesion NN cord-010027-r0tl01kq 1969 7 showed show VBD cord-010027-r0tl01kq 1969 8 classical classical JJ cord-010027-r0tl01kq 1969 9 histological histological JJ cord-010027-r0tl01kq 1969 10 features feature NNS cord-010027-r0tl01kq 1969 11 of of IN cord-010027-r0tl01kq 1969 12 inclusion inclusion NN cord-010027-r0tl01kq 1969 13 body body NN cord-010027-r0tl01kq 1969 14 fibromatosis fibromatosis NN cord-010027-r0tl01kq 1969 15 -spindle -spindle HYPH cord-010027-r0tl01kq 1969 16 cells cell NNS cord-010027-r0tl01kq 1969 17 arranged arrange VBN cord-010027-r0tl01kq 1969 18 in in IN cord-010027-r0tl01kq 1969 19 interlacing interlace VBG cord-010027-r0tl01kq 1969 20 fascicles fascicle NNS cord-010027-r0tl01kq 1969 21 in in IN cord-010027-r0tl01kq 1969 22 collagenous collagenous JJ cord-010027-r0tl01kq 1969 23 stroma stroma NNS cord-010027-r0tl01kq 1969 24 and and CC cord-010027-r0tl01kq 1969 25 numerous numerous JJ cord-010027-r0tl01kq 1969 26 pink pink JJ cord-010027-r0tl01kq 1969 27 intracytoplasmic intracytoplasmic JJ cord-010027-r0tl01kq 1969 28 inclusions inclusion NNS cord-010027-r0tl01kq 1969 29 . . . cord-010027-r0tl01kq 1970 1 The the DT cord-010027-r0tl01kq 1970 2 lesion lesion NN cord-010027-r0tl01kq 1970 3 appeared appear VBD cord-010027-r0tl01kq 1970 4 incompletely incompletely RB cord-010027-r0tl01kq 1970 5 excised excise VBN cord-010027-r0tl01kq 1970 6 and and CC cord-010027-r0tl01kq 1970 7 the the DT cord-010027-r0tl01kq 1970 8 patient patient NN cord-010027-r0tl01kq 1970 9 will will MD cord-010027-r0tl01kq 1970 10 be be VB cord-010027-r0tl01kq 1970 11 kept keep VBN cord-010027-r0tl01kq 1970 12 under under IN cord-010027-r0tl01kq 1970 13 review review NN cord-010027-r0tl01kq 1970 14 on on IN cord-010027-r0tl01kq 1970 15 account account NN cord-010027-r0tl01kq 1970 16 of of IN cord-010027-r0tl01kq 1970 17 the the DT cord-010027-r0tl01kq 1970 18 high high JJ cord-010027-r0tl01kq 1970 19 risk risk NN cord-010027-r0tl01kq 1970 20 of of IN cord-010027-r0tl01kq 1970 21 recurrence recurrence NN cord-010027-r0tl01kq 1970 22 . . . cord-010027-r0tl01kq 1971 1 Decreased decrease VBN cord-010027-r0tl01kq 1971 2 Expression expression NN cord-010027-r0tl01kq 1971 3 of of IN cord-010027-r0tl01kq 1971 4 the the DT cord-010027-r0tl01kq 1971 5 Mitochondrial Mitochondrial NNP cord-010027-r0tl01kq 1971 6 BCAT BCAT NNP cord-010027-r0tl01kq 1971 7 Protein Protein NNP cord-010027-r0tl01kq 1971 8 Correlates correlate VBZ cord-010027-r0tl01kq 1971 9 with with IN cord-010027-r0tl01kq 1971 10 Improved Improved NNP cord-010027-r0tl01kq 1971 11 Patient Patient NNP cord-010027-r0tl01kq 1971 12 Survival Survival NNP cord-010027-r0tl01kq 1971 13 in in IN cord-010027-r0tl01kq 1971 14 IDH IDH NNP cord-010027-r0tl01kq 1971 15 Wild Wild NNP cord-010027-r0tl01kq 1971 16 - - HYPH cord-010027-r0tl01kq 1971 17 Type type NN cord-010027-r0tl01kq 1971 18 Gliomas Gliomas NNP cord-010027-r0tl01kq 1971 19 ME ME NNP cord-010027-r0tl01kq 1971 20 Conway Conway NNP cord-010027-r0tl01kq 1971 21 1 1 CD cord-010027-r0tl01kq 1971 22 ; ; : cord-010027-r0tl01kq 1971 23 J J NNP cord-010027-r0tl01kq 1971 24 Hull Hull NNP cord-010027-r0tl01kq 1971 25 1 1 CD cord-010027-r0tl01kq 1971 26 ; ; : cord-010027-r0tl01kq 1971 27 M M NNP cord-010027-r0tl01kq 1971 28 El El NNP cord-010027-r0tl01kq 1971 29 Hindy Hindy NNP cord-010027-r0tl01kq 1971 30 1 1 CD cord-010027-r0tl01kq 1971 31 ; ; : cord-010027-r0tl01kq 1971 32 SC SC NNP cord-010027-r0tl01kq 1971 33 Taylor Taylor NNP cord-010027-r0tl01kq 1971 34 1 1 CD cord-010027-r0tl01kq 1971 35 ; ; : cord-010027-r0tl01kq 1971 36 F F NNP cord-010027-r0tl01kq 1971 37 El El NNP cord-010027-r0tl01kq 1971 38 Amraoui Amraoui NNP cord-010027-r0tl01kq 1971 39 1 1 CD cord-010027-r0tl01kq 1971 40 ; ; : cord-010027-r0tl01kq 1971 41 C C NNP cord-010027-r0tl01kq 1971 42 Paton Paton NNP cord-010027-r0tl01kq 1971 43 - - HYPH cord-010027-r0tl01kq 1971 44 Thomas Thomas NNP cord-010027-r0tl01kq 1971 45 1 1 CD cord-010027-r0tl01kq 1971 46 ; ; : cord-010027-r0tl01kq 1971 47 P p NN cord-010027-r0tl01kq 1971 48 White white JJ cord-010027-r0tl01kq 1971 49 1 1 CD cord-010027-r0tl01kq 1971 50 ; ; : cord-010027-r0tl01kq 1971 51 M M NNP cord-010027-r0tl01kq 1971 52 Williams Williams NNP cord-010027-r0tl01kq 1971 53 2 2 CD cord-010027-r0tl01kq 1971 54 ; ; : cord-010027-r0tl01kq 1971 55 P p NN cord-010027-r0tl01kq 1971 56 HR HR NNP cord-010027-r0tl01kq 1971 57 Haynes Haynes NNP cord-010027-r0tl01kq 1971 58 3 3 CD cord-010027-r0tl01kq 1971 59 ; ; : cord-010027-r0tl01kq 1971 60 SM SM NNP cord-010027-r0tl01kq 1971 61 Hutson Hutson NNP cord-010027-r0tl01kq 1971 62 4 4 CD cord-010027-r0tl01kq 1971 63 ; ; : cord-010027-r0tl01kq 1972 1 KM KM NNP cord-010027-r0tl01kq 1972 2 Kurian Kurian NNP cord-010027-r0tl01kq 1972 3 3 3 CD